Citrus Sinensis ID: 005277

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700----
Protein Sequence
MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHccccEEEEcccHHHHHHHHHHHccccHHHHHHHHHEEEEEccccccccccHHHHHHHHcccHHHHHHHccccccccccHHHHHHHHHHccccccHHHHHccccHHHHccccccccccccccHHHHHHcccHHccHHHcccccccccccccccccccccccccccHHHHHHHccccccEEEcccccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccccccccEEEcccccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEccccccccEEcccccccEEEEEEcccccEEEEEEccccEEEEccccccEEEccccccccccEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEcccccccEEEEEEEEEccccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEccccccEEEEEcccccccccccccccccccccccccccccccEEEEEEcccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHccccHHHHHHHcEEEEEEccccccccccHHHHHcccccccHHHHHcccccccccccHHHcccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEccccccEEEEcccccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEcccccccEcccccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEccccccEEEEEEEccccccccEEEEEEcccccEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccccccEEEEEccccccEEEEEEcccccEEEEccccccc
Coil and Loop (DISEMBL)
MDELQVVEFVATYLKKKGFSEAENALQAEIQRnkssnntnpidilndpelsKFFRtfsesedgparyqdeySKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKlegvlspshleEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINerinfqvspgqpssisddAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRlektglisdsekaegenkeaeidenkkrpveggkqgaSIKKLKKdkainataktsrleantvstaprvkpdlalpvmpteVEQSILEDLRNRvhlssaalpsvsfytfinthnglncasisqdgslvaggfsdsslKVWDMAKLGQQAVssglqgendttprediigpngrkrsytlyqghsgpvysasfsplgdfilsssadTTIRLWSTKLNANlvcykghnypvwdvqfnpqghyfassshdrtariwsmdriqplrimaghlsdvdcvRWHINCnyiatgssdktvrlwdvssgecvRIFIGHRSMILSlamspdgrymasgdedgTIMMWDlasgrcvtplmghtsCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCascegsllasgsadctvKLWDVTTSTKVLKTEEksgtnrlrslktlptkstpvyslqFSRRNLLFAAGALSKTS
Flexible Loop (DISEMBL)
MDELQVVEFVATYLKKKGFSEAENALQAEiqrnkssnntnpidilNDPELSKFFRTfsesedgparyqDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKtglisdsekaegenkeaeidenkkrpveggkqgasikklkkdkainataktsrleantvstaprvkpdlalpvMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVssglqgendttprediigpngRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNyiatgssdktvrLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVttstkvlkteeksgtnrlrslktlptkstpvyslqfsrRNLLFAAGALSKTS
Low Complexity Region (SEG)
MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS
Disordered region (IsUnstruct)
*****VVEFVATYLKK*****************************************************EYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQV************EIVTLIGS******QINQKEVHWGLLE*****************************************************************************************SILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK*******************************YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL***********************VYSLQFSRRNLLFAA*******
Disordered Region (DISOPRED)
***LQVVEFVATYLKKKGFSEAE**************************************DGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVS*******************************VHWGLLEDSLENR**********************************************************************DLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQ*********NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK**
Disordered Region (DISEMBL)
MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDS*************ENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS
Disordered Region (DISPRO)
*DELQVVEFVATYLKKKGFSEAENALQAEIQ******************LSKFFRT**ESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQP*SISDDAEIVTLIGSNQDAAN*INQKEVHWGLLEDSLEN**************************************************************VSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	704	2.2.26 [Sep-21-2011]
Q15542	800	Transcription initiation	yes	no	0.836	0.736	0.364	1e-111
Q8C092	801	Transcription initiation	yes	no	0.835	0.734	0.364	1e-111
O13282	643	Transcription initiation	yes	no	0.836	0.916	0.324	1e-102
P38129	798	Transcription initiation	yes	no	0.907	0.800	0.310	8e-96
P49846	704	Transcription initiation	yes	no	0.832	0.832	0.320	4e-88
O74319	642	Transcription initiation	no	no	0.867	0.951	0.32	9e-87
Q8SQS4	556	Transcription initiation	yes	no	0.752	0.953	0.302	7e-74
Q91WQ5	589	TAF5-like RNA polymerase	no	no	0.529	0.633	0.374	1e-69
O75529	589	TAF5-like RNA polymerase	no	no	0.529	0.633	0.376	5e-69
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.450	0.207	0.328	5e-43

>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3

 Score =  404 bits (1037), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/680 (36%), Positives = 360/680 (52%), Gaps = 91/680 (13%)

Query: 42  IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCF 101
           + + + P++S     +++  D P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +
Sbjct: 190 VAVEDQPDVSAVLSAYNQQGD-PTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMY 248

Query: 102 MDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIK 161
           ++LV   H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++
Sbjct: 249 LELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLR 308

Query: 162 ICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAAN 220
           I + SY+LL ++L + Q+ ++  I+ E +   +  G P S    DA + +L G   +A  
Sbjct: 309 ISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAG---EAKR 365

Query: 221 QINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKK 280
           + N+ +V +GLL                        KE EI+       E G+      K
Sbjct: 366 EANKSKVFFGLL------------------------KEPEIEVPLDDEDEEGENEEGKPK 401

Query: 281 LKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRN------RVHL 334
            KK K  +  +K+ + +       P   P   +P +P   +   L+ + N      RV L
Sbjct: 402 KKKPKKDSIGSKSKKQD-------PNAPPQNRIP-LPELKDSDKLDKIMNMKETTKRVRL 453

Query: 335 SSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMA----KLGQQAVSS 390
               LPS+ FYTF+N + GL    ++ D SL+AGGF+DS+++VW +     +  +QA   
Sbjct: 454 GPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDL 513

Query: 391 GLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
            L  +      E I+          LY GHSGPVY ASFSP  +++LSSS D T+RLWS 
Sbjct: 514 SLIDKESDDVLERIMDEKTASELKILY-GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSL 572

Query: 451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510
           +    LV YKGHNYPVWD QF+P G+YF S  HDR AR+W+ D  QPLRI AGHL+DV+C
Sbjct: 573 QTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNC 632

Query: 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
            R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH+  I SL  SP+GR++A+G  DG 
Sbjct: 633 TRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGR 692

Query: 571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC 630
           +++WD+  G  V  L GHT  V +L  RF                               
Sbjct: 693 VLLWDIGHGLMVGELKGHTDTVCSL--RF------------------------------- 719

Query: 631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTEE-KSGTNRLR--------SLKTLPTKST 681
            S +G +LASGS D TV+LWD   + + L+T++  + T  +          L T  TKST
Sbjct: 720 -SRDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKST 778

Query: 682 PVYSLQFSRRNLLFAAGALS 701
           PV  L F+RRNL+ AAGA S
Sbjct: 779 PVVHLHFTRRNLVLAAGAYS 798

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.
Homo sapiens (taxid: 9606)

>sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1

 Score =  403 bits (1036), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/681 (36%), Positives = 361/681 (53%), Gaps = 93/681 (13%)

Query: 42  IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCF 101
           + + + P++S     +++  D P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +
Sbjct: 191 VAVEDQPDVSAVLSAYNQQGD-PTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMY 249

Query: 102 MDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIK 161
           ++LV   H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++
Sbjct: 250 LELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLR 309

Query: 162 ICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAAN 220
           I + SY+LL ++L + Q+ ++  I+ E +   +  G P S    DA + +L G   +A  
Sbjct: 310 IYRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAG---EAKR 366

Query: 221 QINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKK 280
           + N+ +V +GLL                        KE EI+       E G+      K
Sbjct: 367 EANKSKVFFGLL------------------------KEPEIEVPLDDEDEEGENEEGKPK 402

Query: 281 LKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRN------RVHL 334
            KK K  +  +K+ + +       P   P   +P +P   +   L+ + N      RV L
Sbjct: 403 KKKPKKDSIGSKSKKQD-------PNAPPQNRIP-LPELKDSDKLDKIMNMKETTKRVRL 454

Query: 335 SSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG--- 391
               LPS+ FYTF+N + GL    ++ D SL+AGGF+DS+++VW +     ++V      
Sbjct: 455 GPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDL 514

Query: 392 --LQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWS 449
             +  E+D    E I+          LY GHSGPVY ASFSP  +++LSSS D T+RLWS
Sbjct: 515 SLIDKESDDV-LERIMDEKTASELKILY-GHSGPVYGASFSPDRNYLLSSSEDGTVRLWS 572

Query: 450 TKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD 509
            +    LV YKGHNYPVWD QF+P G+YF S  HDR AR+W+ D  QPLRI AGHL+DV+
Sbjct: 573 LQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVN 632

Query: 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569
           C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH+  I SL  SP+GR++A+G  DG
Sbjct: 633 CTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDG 692

Query: 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFG 629
            +++WD+  G  V  L GHT  V +L  RF                              
Sbjct: 693 RVLLWDIGHGLMVGELKGHTDTVCSL--RF------------------------------ 720

Query: 630 CASCEGSLLASGSADCTVKLWDVTTSTKVLKTEE-KSGTNRLR--------SLKTLPTKS 680
             S +G +LASGS D TV+LWD   + + L+T++  + T  +          L T  TKS
Sbjct: 721 --SRDGEILASGSMDNTVRLWDAVKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKS 778

Query: 681 TPVYSLQFSRRNLLFAAGALS 701
           TPV  L F+RRNL+ AAGA S
Sbjct: 779 TPVVHLHFTRRNLVLAAGAYS 799

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.

Mus musculus (taxid: 10090)

>sp|O13282|TAF5_SCHPO Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf5 PE=1 SV=1

 Score =  373 bits (958), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/724 (32%), Positives = 366/724 (50%), Gaps = 135/724 (18%)

Query: 9   FVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQ 68
            V  YL KKG+S  E  L+ E   +  S             + +  ++  E+ D    Y 
Sbjct: 15  IVLDYLAKKGYSRTEAMLRLEASGSGVS-------------VEEKLKSIEETPDA---YT 58

Query: 69  DEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMH 128
             Y+ LR W  SSL+LYK EL  +L+P+F+H +++L+++ H + A+ F+  F++DH  +H
Sbjct: 59  HTYTILRDWVDSSLELYKAELHRILFPIFVHSYLNLLSQDHYEAAKQFYELFKDDHTDLH 118

Query: 129 LRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---TKMLGI 185
             D++ L+ +  PSH+ E   A   R +K  +   + +++LLL +L +  S   + ++ +
Sbjct: 119 DFDVKNLKSLSLPSHVAEDRTAQQYRQNKYQLHFSRITFDLLLHFLFENVSNGGSIIIKL 178

Query: 186 INERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLEN------- 238
           IN+ I+  + PG+P+ + +              A  IN++E   G+   S E        
Sbjct: 179 INQHIDIHIVPGRPTVLEN--------------AKVINEQE---GITGQSFERGDAQLQP 221

Query: 239 -RLEKTGLISDSEKA-----EGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAK 292
            +L++  +  + EK      E E+   + D N + P         +K+ +K    NA   
Sbjct: 222 VKLQQMPMDKEMEKIVEMDLEEEDMMHQNDPNNQSP-------KLLKEFRKLHEPNAEDA 274

Query: 293 TSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSS-AALPSVSFYTFINTH 351
            SR   + +   P    D+      +EVE   ++D   R+HL   A+LPSV  YTF +T+
Sbjct: 275 PSR---DYIPLPPHKGVDIL-----SEVEA--VKDWSKRLHLGPRASLPSVCMYTFHHTN 324

Query: 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK 411
           N +NCA  S D +++A GF +S +++W + K  ++++      E+           +G  
Sbjct: 325 NNMNCAEFSPDSTMIACGFQESYIRLWSI-KADKKSLPKSTSVEDS----------DGSV 373

Query: 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF 471
           R  +    HSGPVY  +FSP   ++LS S D + RLWS      LV YKGH  PVWDV F
Sbjct: 374 RLLS----HSGPVYGTTFSPDNKYLLSCSEDASARLWSVDTKTALVAYKGHTGPVWDVAF 429

Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
            P GHYFA++SHD+TA++WS D I PLR+ AGHLSDVDCV +H N  Y+ TGSSDKT RL
Sbjct: 430 GPFGHYFATASHDQTAQLWSCDHIYPLRVFAGHLSDVDCVTFHPNSAYVLTGSSDKTCRL 489

Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC 591
           WDV  G  VR+F GH   + ++A++PDG  MAS D +G I +WD+ +GR +  + GH   
Sbjct: 490 WDVHRGHSVRVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGN 549

Query: 592 VWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD 651
           +++L++                                  S E ++L SG +DCTV+ WD
Sbjct: 550 IYSLSF----------------------------------SRESTVLVSGGSDCTVRAWD 575

Query: 652 V------------TTSTKVLKTEEKSGTNRLRSLKTLP-------TKSTPVYSLQFSRRN 692
           V             T + V     K+ T    +  T P       TK TP++++ F+RRN
Sbjct: 576 VFKTNYNNPVSSSLTGSVVTPFSAKTSTFNEVNWSTSPDQMVALYTKQTPIFNVSFTRRN 635

Query: 693 LLFA 696
           L  A
Sbjct: 636 LCLA 639

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Regulates the genes involved in ubiquitin-dependent proteolysis during the progression of M-phase of mitosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38129|TAF5_YEAST Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF5 PE=1 SV=1

 Score =  352 bits (902), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 244/787 (31%), Positives = 377/787 (47%), Gaps = 148/787 (18%)

Query: 9   FVATYLKKKGFSEAENALQAEIQRNKSSNN-----------------------------T 39
            V  YL KKG+   E  L+AE  R  +  N                             +
Sbjct: 63  IVLEYLNKKGYHRTEAMLRAESGRTLTPQNKQSPANTKTGKFPEQSSIPPNPGKTAKPIS 122

Query: 40  NPIDILN--DPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVF 97
           NP ++ +  D E         E  + P  Y   YS L++W  SSL++YK EL +++YP+F
Sbjct: 123 NPTNLSSKRDAEGGIVSSGRLEGLNAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIF 182

Query: 98  IHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSK 157
           I+ F++LVAK  +  AR FF+ F  D +  H  ++ +L  V S  H++E E A + +  K
Sbjct: 183 IYLFLNLVAKNPVY-ARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHK 241

Query: 158 VNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQD 217
             I + + +  LLL +L++ +S     II+  IN  + P    S++   ++   I    D
Sbjct: 242 YRITMSKTTLNLLLYFLNENESIGGSLIIS-VINQHLDPNIVESVTAREKLADGIKVLSD 300

Query: 218 AAN-------QINQKEVHWGLL--EDSLENRLEKTGLISDSEKAE-----------GENK 257
           + N       ++N   V  G    ++     +E    I D ++ +           G N 
Sbjct: 301 SENGNGKQNLEMNSVPVKLGPFPKDEEFVKEIETELKIKDDQEKQLNQQTAGDNYSGANN 360

Query: 258 EAEIDENKKRPVEGGKQGASI--------------KKLKKDKAINATAKTSRLEANTVST 303
              + E K    E  K                   +K + +  ++   K S L +     
Sbjct: 361 RTLLQEYKAMNNEKFKDNTGDDDKDKIKDKIAKDEEKKESELKVDGEKKDSNLSSPARDI 420

Query: 304 APRVKPDLALPVMPTEVEQSILEDLRNRVHLSSA--ALPSVSFYTFINTHNGLNCASISQ 361
            P + P  AL +   ++E   +++ R+ + L +   ALPSV  YTF NT+  ++C   S 
Sbjct: 421 LP-LPPKTALDL---KLEIQKVKESRDAIKLDNLQLALPSVCMYTFQNTNKDMSCLDFSD 476

Query: 362 DGSLVAGGFSDSSLKVW--DMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
           D  + A GF DS +K+W  D + L    ++     +++    + ++G             
Sbjct: 477 DCRIAAAGFQDSYIKIWSLDGSSLNNPNIALNNNDKDEDPTCKTLVG------------- 523

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
           HSG VYS SFSP   ++LS S D T+RLWS   +  LV YKGHN+PVWDV F+P GHYFA
Sbjct: 524 HSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFA 583

Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           ++SHD+TAR+WS D I PLRI AGHL+DVDCV +H N  Y+ TGSSDKT R+WDVS+G+ 
Sbjct: 584 TASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDS 643

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYR 598
           VR+F+GH + ++S+A+ PDGR++++G EDG I +WD+ +G+ +  + GH  + +++L+Y 
Sbjct: 644 VRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSY- 702

Query: 599 FLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV 658
                                            S EG++L SG AD TV++WD+  +T  
Sbjct: 703 ---------------------------------SKEGNVLISGGADHTVRVWDLKKATTE 729

Query: 659 LKTEEKSG------------------TNRLRS-------LKTLPTKSTPVYSLQFSRRNL 693
              E                        R R+       + +  TK TPV+ ++FSR NL
Sbjct: 730 PSAEPDEPFIGYLGDVTASINQDIKEYGRRRTVIPTSDLVASFYTKKTPVFKVKFSRSNL 789

Query: 694 LFAAGAL 700
             A GA 
Sbjct: 790 ALAGGAF 796

Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modification (histone acetylation by TAF1), facilitation of DNA opening and initiation of transcription. SAGA is involved in RNA polymerase II-dependent transcriptional regulation of approximately 10% of yeast genes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction (SPT3, SPT8 and SPT20) and promoter selectivity, interaction with transcription activators (GCN5, ADA2, ADA3 and TRA1), and chromatin modification through histone acetylation (GCN5) and deubiquitination (UBP8). SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA via upstream activating sequences (UASs). SALSA, an altered form of SAGA, may be involved in positive transcriptional regulation. SLIK is proposed to have partly overlapping functions with SAGA. It preferentially acetylates methylated histone H3, at least after activation at the GAL1-10 locus.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P49846|TAF5_DROME Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1

 Score =  326 bits (835), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 213/664 (32%), Positives = 336/664 (50%), Gaps = 78/664 (11%)

Query: 49  ELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKG 108
           EL+KF     +S D    Y+  Y +LR++   SLD+YKHEL  VLYP+ +  +  ++A G
Sbjct: 101 ELAKFID--DDSFDAQ-HYEQAYKELRTFVEDSLDIYKHELSMVLYPILVQIYFKILASG 157

Query: 109 HIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYE 168
             ++A+ F   ++ D +  ++  L  L  +  P  L E +   ++   K  I++ + S+ 
Sbjct: 158 LREKAKEFIEKYKCDLDGYYIEGLFNLLLLSKPEELLENDLVVAMEQDKFVIRMSRDSHS 217

Query: 169 LLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSN-QDAANQINQKEV 227
           L  +++   +   +  I+++ ++F    G      +  + V   GS+  +A  Q N+  V
Sbjct: 218 LFKRHIQDRRQEVVADIVSKYLHFDTYEGMAR---NKLQCVATAGSHLGEAKRQDNKMRV 274

Query: 228 HWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAI 287
           ++              GL+      E + +            +         K KK K  
Sbjct: 275 YY--------------GLLK-----EVDFQTLTTPAPAPEEEDDDPDAPDRPKKKKPKKD 315

Query: 288 NATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLR---NRVHLSSAALPSVSF 344
              +K S+ + N    AP +   + LP +    +   L+ LR    R+ LS   LPS  F
Sbjct: 316 PLLSKKSKSDPN----APSIDR-IPLPELKDSDKLLKLKALREASKRLALSKDQLPSAVF 370

Query: 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDM--AKLGQQAVSSGLQGENDTTPRE 402
           YT +N+H G+ CA IS D +++A GF DSS+++W +  AKL     +  L+  +  +   
Sbjct: 371 YTVLNSHQGVTCAEISDDSTMLACGFGDSSVRIWSLTPAKLRTLKDADSLRELDKESADI 430

Query: 403 DIIGPNGRKRSYTL-YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG 461
           ++   + R    T    GH+GPVY  +F+P  + +LS S D+TIRLWS    + +V Y+G
Sbjct: 431 NVRMLDDRSGEVTRSLMGHTGPVYRCAFAPEMNLLLSCSEDSTIRLWSLLTWSCVVTYRG 490

Query: 462 HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIA 521
           H YPVWDV+F P G+YF S S+D+TAR+W+ D  Q LR+  GHLSDVDCV++H N NY+A
Sbjct: 491 HVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNYVA 550

Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581
           TGSSD+TVRLWD  +G+ VR+  GH+  + SLA S  GRY+ASG  D  I++WDL++G  
Sbjct: 551 TGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNGSL 610

Query: 582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG 641
           VT L+ HTS V T+ +                                  S +G++LA+ 
Sbjct: 611 VTTLLRHTSTVTTITF----------------------------------SRDGTVLAAA 636

Query: 642 SADCTVKLWDVTTSTK-------VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL 694
             D  + LWD    T+        +   +      +  ++T P+K++P  SL F+RRNLL
Sbjct: 637 GLDNNLTLWDFHKVTEDYISNHITVSHHQDENDEDVYLMRTFPSKNSPFVSLHFTRRNLL 696

Query: 695 FAAG 698
              G
Sbjct: 697 MCVG 700

TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. May play a role in helping to anchor Taf4 within the TFIID complex. May be involved in transducing signals from various transcriptional regulators to the RNA polymerase II transcription machinery.

Drosophila melanogaster (taxid: 7227)

>sp|O74319|TAF73_SCHPO Transcription initiation factor TFIID subunit taf73 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf73 PE=1 SV=1

 Score =  322 bits (824), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 224/700 (32%), Positives = 345/700 (49%), Gaps = 89/700 (12%)

Query: 8   EFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARY 67
           + V  YL KKG+S  E  L+ EI    SS    P       E   +    SE+      Y
Sbjct: 17  KIVLDYLFKKGYSRTEAMLRLEI----SSVGAIP------EEQQDWHIGASET------Y 60

Query: 68  QDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMM 127
              Y  LR W   +LDLYK +L  VLYP+F+H ++DL+ K   + A  FF +FR +HE++
Sbjct: 61  VQVYILLRDWIDGTLDLYKPKLQKVLYPIFVHSYLDLLQKNDPEMAIYFFESFRIEHEVL 120

Query: 128 HLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQ---STKMLG 184
           H  D++ L  +   S +EE+E A   R +K  I   + +++LL+Q+L + +   S  ++ 
Sbjct: 121 HGYDIRALAQLKIASDVEEIEIAQLYRKNKYRINFTRSTFDLLVQFLFENEVNGSGIIIR 180

Query: 185 IINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKT 243
           ++N+ I+ +++  Q     D + + V  +   ++    I+++E   G  E  L+   +  
Sbjct: 181 LLNQYIDIKITMPQVEGKEDPNVQAVYEMDEAKNEQTIISEQEGIPGHSEQLLDYNKQSI 240

Query: 244 GLISDSEKAEGENKEAEIDENKKRPVEGGKQGAS-IKKLKKDKAINATAKTSRLEANTVS 302
            L       E       + E K + VEG  +  + I    K+     T K + +  +T+ 
Sbjct: 241 QLGLRPLSEEVVTTLKNLLEVKDKDVEGRNEALNKILHPAKNLVELLTEKENLINESTLE 300

Query: 303 TAPRVKPDLALPVMPTEVEQ-----SILEDLRNRVHLSSAAL-PSVSFYTFINTHNGLNC 356
           +      D  LP  PT+++      S+LE  +N + L   A  PSV  YT  NT + +NC
Sbjct: 301 SPS----DPPLP--PTKMKDIDYFVSLLESEQNSLILGKNATDPSVFMYTMHNTLSAVNC 354

Query: 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416
           A+ S D S+ A G +DSS+ ++     G Q +   +  +N+   +  +IG          
Sbjct: 355 AAFSDDASMFALGCADSSIHLYSSTNNGPQPL---VGSQNEPLQKSSLIG---------- 401

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
              H+ PV+  S SP  +FILS S D   RLWS    + +V Y GHN P+WDVQF+P G+
Sbjct: 402 ---HTRPVFGVSISPQKEFILSCSEDGFTRLWSKDTKSTIVKYAGHNAPIWDVQFSPFGY 458

Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           YFA++SHD+TAR+W ++   PLR+  GH +DVDCV +H N  Y+ATGSSD T R+WDV +
Sbjct: 459 YFATASHDQTARLWDVEHAAPLRVFVGHQNDVDCVSFHPNAAYLATGSSDHTTRMWDVRT 518

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLA 596
           G  VR+F  H S + +L MS DG  +AS DE G I +WDL S       + H+S V++L+
Sbjct: 519 GGTVRVFNAHHSPVSALCMSADGLSLASADESGIIKVWDLRSSNQHVSFVKHSSIVYSLS 578

Query: 597 YRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656
           + +                                  +  +L SG AD  V  WD+T   
Sbjct: 579 FSY----------------------------------DNKILVSGGADTDVNFWDLTYRN 604

Query: 657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA 696
            +   E+         L    TK+T + +L F+RRN   A
Sbjct: 605 NLSDGEQSP------LLFNFKTKNTIIQNLSFTRRNYCLA 638

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Regulates the genes involved in ubiquitin-dependent proteolysis during the progression of M-phase of mitosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8SQS4|TAF5_ENCCU Transcription initiation factor TFIID subunit 5 OS=Encephalitozoon cuniculi (strain GB-M1) GN=TAF5 PE=1 SV=1

 Score =  279 bits (713), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 191/632 (30%), Positives = 313/632 (49%), Gaps = 102/632 (16%)

Query: 71  YSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLR 130
           Y  L++W   SLDL+K++LL +LYP+FIH + DL+ +    EA+ FF  +R DH      
Sbjct: 23  YVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDH-YNKSE 81

Query: 131 DLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERI 190
           ++++ E + +  H+ E  FA++ ++SK ++ + +Y+++LL+ +L +   T +L I+N+ +
Sbjct: 82  EIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHL 141

Query: 191 NFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSE 250
           + +V  G  S         +++ +  D    +  +E    +L D               E
Sbjct: 142 DIKVYVGPKSEERPQGIETSVVDAEIDLTTFLVSRECEDAILGD---------------E 186

Query: 251 KAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPD 310
           +   ++ E  + + +K+           +++K   ++                    KP+
Sbjct: 187 QYRYDHLETYVLQLRKQ-----------REMKPKDSV-------------------YKPN 216

Query: 311 LALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
            +   +  E+E+  L+DL  RV ++   LPS+  YT  NT+ GL  A IS D  L+A GF
Sbjct: 217 ASQ--IHAEIEK--LKDLCKRVAVNKNNLPSICCYTIHNTYEGLTAAEISNDLKLMACGF 272

Query: 371 SDSSLKVWDMAK--LGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428
            DS ++V+ +    L +   SS L   +  T  E+     G   SY L  GHSGPVY   
Sbjct: 273 KDSYVEVYSLTNESLKKLKSSSELAKSDIKTLNEEKFEEVGS--SYKLV-GHSGPVYGLK 329

Query: 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488
           F     F++SSS D T+ LWS  L   L  YK H +PVW V   P  ++FAS + DR A 
Sbjct: 330 FFSSNKFLVSSSQDCTVCLWSLDLLCLLAVYKAHAFPVWCVDVAPNDYFFASGAGDRQAI 389

Query: 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS 548
           +WS+   +P R++   LSDV  V++H N +Y+ TGSSD  VR+ D+S+   VRIF GH  
Sbjct: 390 VWSVMTSKPERLIISSLSDVTAVKFHPNSSYLFTGSSDHRVRMHDISTASVVRIFCGHTD 449

Query: 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYL 608
            +  + +S  G+++ASG +D T+++WD+ S + +   +GH + V+               
Sbjct: 450 TVTCMDVSHCGKFLASGSKDRTVLLWDIQSSKLLGKYVGHENTVF--------------- 494

Query: 609 KISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTN 668
                 S  F FY             GS+LAS  AD +V+LWD        +T+ K G  
Sbjct: 495 ------SVSFCFY-------------GSVLASCGADNSVRLWD--------RTDHKGGC- 526

Query: 669 RLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 700
               L T  TK+TP+  ++F  RN++   G  
Sbjct: 527 ----LGTYYTKNTPLLCVKFGYRNIISCTGPF 554

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Regulates the genes involved in ubiquitin-dependent proteolysis during the progression of M-phase of mitosis.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

>sp|Q91WQ5|TAF5L_MOUSE TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1

 Score =  264 bits (675), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 158/422 (37%), Positives = 220/422 (52%), Gaps = 49/422 (11%)

Query: 282 KKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPS 341
           + D  + A+  +SR E +++       P++  P++  E    +L++   RV     +L +
Sbjct: 204 RTDYQLYASGGSSRTENSSLE-----PPEVPSPILQNEAALEVLQESIKRVKDGPPSLTT 258

Query: 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDM--AKLGQQ---AVSSGLQGEN 396
           + FY F NT   LN A IS D  L+A GF +S +K+W +   KL  +     +S ++   
Sbjct: 259 ICFYAFYNTEQLLNTAEISSDSKLLAAGFDNSCIKLWSLRSKKLKSEPHHVDTSRIRLAC 318

Query: 397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL 456
           DT   E+    N       L +GH GPVYS  F      +LS S D +IR W      N 
Sbjct: 319 DTLEEEENEEDNTGTEMKIL-RGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNT 377

Query: 457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN 516
           V Y+GH YPVWDV  +P   YFAS SHDRTAR+WS DR  PLRI AGHL+DVDCV++H N
Sbjct: 378 VLYQGHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPN 437

Query: 517 CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
            NY+ATGS+DKTVRLW    G  VR+F GHR  +LSL+ SP+G+Y+AS  ED  + +WDL
Sbjct: 438 SNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDL 497

Query: 577 ASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS 636
           ASG     L GHT  + +LA+                                  S +  
Sbjct: 498 ASGTLFKELRGHTDSITSLAF----------------------------------SPDSG 523

Query: 637 LLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA 696
           L+AS S D +V++WD+ ++     T     +  L  + T   + + V S+QF   NLL  
Sbjct: 524 LIASASMDNSVRVWDIRST--CCNTPADGSSGELVGVYT--GQMSNVLSVQFMACNLLLV 579

Query: 697 AG 698
            G
Sbjct: 580 TG 581

Functions as a component of the PCAF complex. The PCAF complex is capable of efficiently acetylating histones in a nucleosomal context. The PCAF complex could be considered as the human version of the yeast SAGA complex.

Mus musculus (taxid: 10090)

>sp|O75529|TAF5L_HUMAN TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1

 Score =  262 bits (670), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 159/422 (37%), Positives = 214/422 (50%), Gaps = 49/422 (11%)

Query: 282 KKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPS 341
           + D  + A+  +SR E N +       PD+  P++  E    +L++   RV     +L +
Sbjct: 204 RTDYQLYASGSSSRSENNGLE-----PPDMPSPILQNEAALEVLQESIKRVKDGPPSLTT 258

Query: 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDM--AKLG---QQAVSSGLQGEN 396
           + FY F NT   LN A IS D  L+A GF +S +K+W +   KL     Q   S +    
Sbjct: 259 ICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHQVDVSRIHLAC 318

Query: 397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL 456
           D    ED    N       L +GH GPVYS  F      +LS S D +IR W      N 
Sbjct: 319 DILEEEDDEDDNAGTEMKIL-RGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNT 377

Query: 457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN 516
           V Y+GH YPVWD+  +P   YFAS SHDRTAR+WS DR  PLRI AGHL+DVDCV++H N
Sbjct: 378 VLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPN 437

Query: 517 CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
            NY+ATGS+DKTVRLW    G  VR+F GHR  +LSLA SP+G+Y+AS  ED  + +WDL
Sbjct: 438 SNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDL 497

Query: 577 ASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS 636
           ASG     L GHT  + +L +                                  S +  
Sbjct: 498 ASGTLYKELRGHTDNITSLTF----------------------------------SPDSG 523

Query: 637 LLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA 696
           L+AS S D +V++WD+  +           ++ L  + T   + + V S+QF   NLL  
Sbjct: 524 LIASASMDNSVRVWDIRNT--YCSAPADGSSSELVGVYT--GQMSNVLSVQFMACNLLLV 579

Query: 697 AG 698
            G
Sbjct: 580 TG 581

Functions as a component of the PCAF complex. The PCAF complex is capable of efficiently acetylating histones in a nucleosomal context. The PCAF complex could be considered as the human version of the yeast SAGA complex.

Homo sapiens (taxid: 9606)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  176 bits (446), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 175/347 (50%), Gaps = 30/347 (8%)

Query: 344  FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG------------ 391
             YT     N +N  + S DG+ +A G  D ++++WD++      +  G            
Sbjct: 1151 LYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNP 1210

Query: 392  -----LQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIR 446
                   G +D T R   +      +    +QGH+  V S  F+P G  + S S+D T+R
Sbjct: 1211 DGSTLASGSSDQTVR---LWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVR 1267

Query: 447  LWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS 506
            LW    +  L  ++GH   V  V FNP G   AS S D+T R+W +   + L    GH S
Sbjct: 1268 LWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTS 1327

Query: 507  DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566
             V  V +  +   +A+GS D+TVRLW +SSGEC+  F+GH + + S+  SPDG  +ASG 
Sbjct: 1328 WVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGS 1387

Query: 567  EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYR--FLLLVTNAYLKISD--KVSTGFLFYS 622
             D T+ +W ++SG+C+  L GH + V ++ +     LL + +  +      +S+G   Y+
Sbjct: 1388 GDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYT 1447

Query: 623  L----TIIYFGCASCEGSLLASGSADCTVKLWDVTTS--TKVLKTEE 663
            L      +     S +G +LASGS D T+KLWDV T    K LK+E+
Sbjct: 1448 LHGHINSVRSVAFSSDGLILASGSDDETIKLWDVKTGECIKTLKSEK 1494

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	704
359475836	676	PREDICTED: transcription initiation fact	0.950	0.989	0.778	0.0
359475838	667	PREDICTED: transcription initiation fact	0.940	0.992	0.772	0.0
255548758	670	protein with unknown function [Ricinus c	0.946	0.994	0.774	0.0
449455529	674	PREDICTED: transcription initiation fact	0.948	0.991	0.762	0.0
224092584	675	predicted protein [Populus trichocarpa]	0.950	0.991	0.766	0.0
224143295	675	predicted protein [Populus trichocarpa]	0.950	0.991	0.765	0.0
356514986	663	PREDICTED: transcription initiation fact	0.937	0.995	0.743	0.0
356507277	669	PREDICTED: transcription initiation fact	0.943	0.992	0.743	0.0
357466033	715	Transcription initiation factor TFIID su	0.947	0.932	0.684	0.0
79520288	669	transcription initiation factor TFIID su	0.943	0.992	0.737	0.0

>gi|359475836|ref|XP_003631761.1| PREDICTED: transcription initiation factor TFIID subunit 5-like isoform 2 [Vitis vinifera] gi|296082065|emb|CBI21070.3| unnamed protein product [Vitis vinifera]

 Score = 1129 bits (2920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/709 (77%), Positives = 604/709 (85%), Gaps = 40/709 (5%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEI---QRNKSSNNTNPIDILNDPELSKFFRTF 57
           M+E ++ + V  YLKKKGF + E A Q E    Q  ++ N+++ I    DP+++K   +F
Sbjct: 1   MEEEEIEKAVIAYLKKKGFKQTELAFQEEHHQHQNQQTKNSSSSISSSTDPDIAKHILSF 60

Query: 58  SESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFF 117
           SESE+ PARY + YSKLRSWTYSSLDLYKHELL VLYPVFIHCFMDLVAKGHIQEAR FF
Sbjct: 61  SESENIPARYHEGYSKLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFF 120

Query: 118 NNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKT 177
           N+FREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLR SKV+IKICQYSYELLLQYLHKT
Sbjct: 121 NSFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVSIKICQYSYELLLQYLHKT 180

Query: 178 QSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLE 237
           QS  MLG+INE INFQVSPGQP+SISDDAE+VTLIGS+QD ANQINQKE+HWGLLE SLE
Sbjct: 181 QSITMLGVINEHINFQVSPGQPASISDDAEVVTLIGSSQDDANQINQKEIHWGLLEGSLE 240

Query: 238 NRLEKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRL 296
            RLEK G L+SDSEKAEGE KE + +ENKKR  EGGKQG+SIKKLKKDK + A  KT+R 
Sbjct: 241 ERLEKAGGLLSDSEKAEGEVKETDTEENKKRSAEGGKQGSSIKKLKKDKVVGAAGKTARP 300

Query: 297 EANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNC 356
           EAN VS APRVKP+LALPVMPTEVEQSILEDLRNRV LSS ALPSVSFYTFINTHN LNC
Sbjct: 301 EANAVSMAPRVKPELALPVMPTEVEQSILEDLRNRVQLSSMALPSVSFYTFINTHNSLNC 360

Query: 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416
           +SIS DGSLVAGGFSDSSLKVWDM+KLGQQA +S +QG+ND  P E I+G +G KRSYTL
Sbjct: 361 SSISHDGSLVAGGFSDSSLKVWDMSKLGQQAATSIMQGDNDLAPTEQILGTSGGKRSYTL 420

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           +QGHSGPVYSA+FSPLGDFILSSSAD+TIRLWSTKLNANLVCYKGHNYPVWDVQF+P GH
Sbjct: 421 FQGHSGPVYSATFSPLGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGH 480

Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WHINCNYIATGSSDKTVRLWDV S
Sbjct: 481 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHINCNYIATGSSDKTVRLWDVQS 540

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLA 596
           GECVRIFIGHRSM+LSLAMSPDG+YMASGDEDGTIMMWDL+SGRCV PLMGH SCVW+LA
Sbjct: 541 GECVRIFIGHRSMVLSLAMSPDGQYMASGDEDGTIMMWDLSSGRCVMPLMGHMSCVWSLA 600

Query: 597 YRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656
           +                                  SCEGSLLASGSAD TVKLWDVTTST
Sbjct: 601 F----------------------------------SCEGSLLASGSADSTVKLWDVTTST 626

Query: 657 KVLKTEE-KSG-TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
           KV ++EE KSG T+RLRSLKTLPTKSTPVYSL+FSRRNLLFAAGALSK+
Sbjct: 627 KVPRSEENKSGNTSRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKS 675

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475838|ref|XP_002285276.2| PREDICTED: transcription initiation factor TFIID subunit 5-like isoform 1 [Vitis vinifera]

 Score = 1119 bits (2894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/707 (77%), Positives = 597/707 (84%), Gaps = 45/707 (6%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEI---QRNKSSNNTNPIDILNDPELSKFFRTF 57
           M+E ++ + V  YLKKKGF + E A Q E    Q  ++ N+++ I    DP+++K     
Sbjct: 1   MEEEEIEKAVIAYLKKKGFKQTELAFQEEHHQHQNQQTKNSSSSISSSTDPDIAK----- 55

Query: 58  SESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFF 117
             SE+ PARY + YSKLRSWTYSSLDLYKHELL VLYPVFIHCFMDLVAKGHIQEAR FF
Sbjct: 56  --SENIPARYHEGYSKLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFF 113

Query: 118 NNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKT 177
           N+FREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLR SKV+IKICQYSYELLLQYLHKT
Sbjct: 114 NSFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVSIKICQYSYELLLQYLHKT 173

Query: 178 QSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLE 237
           QS  MLG+INE INFQVSPGQP+SISDDAE+VTLIGS+QD ANQINQKE+HWGLLE SLE
Sbjct: 174 QSITMLGVINEHINFQVSPGQPASISDDAEVVTLIGSSQDDANQINQKEIHWGLLEGSLE 233

Query: 238 NRLEKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRL 296
            RLEK G L+SDSEKAEGE KE + +ENKKR  EGGKQG+SIKKLKKDK + A  KT+R 
Sbjct: 234 ERLEKAGGLLSDSEKAEGEVKETDTEENKKRSAEGGKQGSSIKKLKKDKVVGAAGKTARP 293

Query: 297 EANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNC 356
           EAN VS APRVKP+LALPVMPTEVEQSILEDLRNRV LSS ALPSVSFYTFINTHN LNC
Sbjct: 294 EANAVSMAPRVKPELALPVMPTEVEQSILEDLRNRVQLSSMALPSVSFYTFINTHNSLNC 353

Query: 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416
           +SIS DGSLVAGGFSDSSLKVWDM+KLGQQA +S +QG+ND  P E I+G +G KRSYTL
Sbjct: 354 SSISHDGSLVAGGFSDSSLKVWDMSKLGQQAATSIMQGDNDLAPTEQILGTSGGKRSYTL 413

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           +QGHSGPVYSA+FSPLGDFILSSSAD+TIRLWSTKLNANLVCYKGHNYPVWDVQF+P GH
Sbjct: 414 FQGHSGPVYSATFSPLGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGH 473

Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WHINCNYIATGSSDKTVRLWDV S
Sbjct: 474 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHINCNYIATGSSDKTVRLWDVQS 533

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLA 596
           GECVRIFIGHRSM+LSLAMSPDG+YMASGDEDGTIMMWDL+SGRCV PLMGH SCVW+LA
Sbjct: 534 GECVRIFIGHRSMVLSLAMSPDGQYMASGDEDGTIMMWDLSSGRCVMPLMGHMSCVWSLA 593

Query: 597 YRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656
           +                                  SCEGSLLASGSAD TVKLWDVTTST
Sbjct: 594 F----------------------------------SCEGSLLASGSADSTVKLWDVTTST 619

Query: 657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
           KV ++EE   T+RLRSLKTLPTKSTPVYSL+FSRRNLLFAAGALSK+
Sbjct: 620 KVPRSEENGNTSRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKS 666

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548758|ref|XP_002515435.1| protein with unknown function [Ricinus communis] gi|223545379|gb|EEF46884.1| protein with unknown function [Ricinus communis]

 Score = 1116 bits (2887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/706 (77%), Positives = 598/706 (84%), Gaps = 40/706 (5%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           MDE QVV+FV TYLKKKGF +AE A   E+QRN  +N+   +D+ +DP+LS    + S+S
Sbjct: 1   MDEEQVVKFVETYLKKKGFKQAELAFHDEVQRNSRANS---VDVHSDPDLSTLLLSLSQS 57

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           ED PARY DEY KLRSWT+SSLDLYK ELL VLYPVF+HC+MDLVAK HIQEARTFFNNF
Sbjct: 58  EDTPARYHDEYGKLRSWTHSSLDLYKPELLRVLYPVFVHCYMDLVAKAHIQEARTFFNNF 117

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
           REDHE MH RDLQKLEGVLSPSHLEEMEFAH+LR SKVNIKICQYS ELL+QYL  T+ST
Sbjct: 118 REDHETMHSRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSNELLMQYLRNTKST 177

Query: 181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
            MLGI+NE INFQVSPGQPSSISDD E+VTLIGS+QDAANQIN+KE+HWGLLEDS+E  L
Sbjct: 178 MMLGIVNEHINFQVSPGQPSSISDDDEVVTLIGSSQDAANQINKKEIHWGLLEDSMEEHL 237

Query: 241 EKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEAN 299
           EK G L SDSEK EGE KE ++DE+KKR +EGGKQG S+KK+KKDKA +ATAK  R E N
Sbjct: 238 EKAGGLHSDSEKTEGEAKEGDMDESKKRSIEGGKQGTSVKKMKKDKATSATAKVVRPETN 297

Query: 300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359
           +  TAPRVKP+L LPV+PTEVEQSILEDLRNRV LSSAALPSVSFYTFINTHNGLNC+SI
Sbjct: 298 SAPTAPRVKPELPLPVIPTEVEQSILEDLRNRVQLSSAALPSVSFYTFINTHNGLNCSSI 357

Query: 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
           S DGSLVAGGFSDSSLKVWDMAKLGQQ  +S LQG NDT   E  +G NG KRSYTL+QG
Sbjct: 358 SHDGSLVAGGFSDSSLKVWDMAKLGQQGSNSVLQGANDTAASEHFLGANGAKRSYTLFQG 417

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
           HSGPVYSA+FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF+P GHYFA
Sbjct: 418 HSGPVYSATFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFA 477

Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           S+SHDRTARIWSMDR+QPLRI+AGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SGEC
Sbjct: 478 SASHDRTARIWSMDRLQPLRILAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGEC 537

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRF 599
           VRIFIGHRSMILSLAMSPDGR+MAS DEDGTIMMWDL+SGRCV+PLMGH SCVWTLA+  
Sbjct: 538 VRIFIGHRSMILSLAMSPDGRFMASADEDGTIMMWDLSSGRCVSPLMGHNSCVWTLAF-- 595

Query: 600 LLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL 659
                                           SCEGSLLASGSADCTVKLWDVT+STKV 
Sbjct: 596 --------------------------------SCEGSLLASGSADCTVKLWDVTSSTKVT 623

Query: 660 KTEE-KSGT-NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
           K EE KSG+ NRLRSLKTLPTKSTPVYSL+FSRRNLLFAAG LSK+
Sbjct: 624 KAEESKSGSANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGVLSKS 669

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455529|ref|XP_004145505.1| PREDICTED: transcription initiation factor TFIID subunit 5-like [Cucumis sativus] gi|449485181|ref|XP_004157092.1| PREDICTED: transcription initiation factor TFIID subunit 5-like [Cucumis sativus]

 Score = 1112 bits (2875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/707 (76%), Positives = 600/707 (84%), Gaps = 39/707 (5%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           MDE  +  FV+ YLKKKGF E E A Q E+++NK+ N+++P   + D +++K   +FSE+
Sbjct: 1   MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKT-NSSSPSSFI-DVDVAKHLLSFSEA 58

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           E+ PA+Y + YSKLRSW Y+SLDLYKHELL VLYPVFIHCFMDLVAKGHIQEARTFFN F
Sbjct: 59  ENIPAKYLEGYSKLRSWAYNSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNRF 118

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
           REDHEMMHLRD+QKLEGVLSPSHLEEMEFAHSLR  KVNIKICQYSYE+LLQYLHKTQ+T
Sbjct: 119 REDHEMMHLRDIQKLEGVLSPSHLEEMEFAHSLRQGKVNIKICQYSYEMLLQYLHKTQTT 178

Query: 181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
            +LGIINERINFQV PGQPSSISDDAE+VTL GS QD ANQIN+KEVHWGLLEDSLE RL
Sbjct: 179 VILGIINERINFQVFPGQPSSISDDAELVTLTGSTQDTANQINKKEVHWGLLEDSLEERL 238

Query: 241 EKT-GLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEAN 299
           EK  GL+SDSEKAEGE K+ ++DENKKR  EGGKQG SIKK+KKDK  +AT KT R EAN
Sbjct: 239 EKAAGLLSDSEKAEGETKDGDVDENKKRTAEGGKQGGSIKKVKKDKTASATGKTLRAEAN 298

Query: 300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359
           + S APRVKP+LALP++ TEVE+SILEDLRNRV LSS ALPSVSFYTFINTHNGLNC+SI
Sbjct: 299 SASMAPRVKPELALPIISTEVEESILEDLRNRVQLSSVALPSVSFYTFINTHNGLNCSSI 358

Query: 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
           S DG+LVAGGFSDSSLKVWDMAKLGQQA ++ LQ END +  + + G    KR YTL+QG
Sbjct: 359 SYDGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDMSTSDPVTGHTSGKRPYTLFQG 418

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
           HSGPV+SA+FSP+GDF+LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF+P GHYFA
Sbjct: 419 HSGPVHSATFSPIGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFA 478

Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           S SHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SGEC
Sbjct: 479 SCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGEC 538

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRF 599
           VRIFIGHRSMILSLAMSPDGR+MASGDEDGTIMMWDL++GRCVTPL+GHTSCVWTLA+  
Sbjct: 539 VRIFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWDLSTGRCVTPLIGHTSCVWTLAF-- 596

Query: 600 LLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL 659
                                           SCEGSLLASGSADCTVKLWDVT+STK  
Sbjct: 597 --------------------------------SCEGSLLASGSADCTVKLWDVTSSTKPP 624

Query: 660 KTEE-KSGT-NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS 704
           +T+E K+GT NRLRSLKTLPTKSTPVYSL+FSRRNLLFAAGALSK +
Sbjct: 625 RTDENKTGTPNRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKNA 671

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092584|ref|XP_002309672.1| predicted protein [Populus trichocarpa] gi|222855648|gb|EEE93195.1| predicted protein [Populus trichocarpa]

 Score = 1087 bits (2811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/708 (76%), Positives = 603/708 (85%), Gaps = 39/708 (5%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKS--SNNTNPIDILNDPELSKFFRTFS 58
           MDE  VV+FV TYLKKKGF +AE A Q EIQ+ +   +N+ N I+I +DP+LS    + S
Sbjct: 1   MDEEAVVKFVETYLKKKGFKQAELAFQEEIQQQQQKQNNSKNAINIHSDPDLSTLLHSLS 60

Query: 59  ESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFN 118
           + ED PARYQ+EYSKLR+W YSSLDLYKHELL VLYPVF+HC+MD+VAKGHIQ+AR FFN
Sbjct: 61  QPEDSPARYQEEYSKLRTWAYSSLDLYKHELLRVLYPVFVHCYMDIVAKGHIQDARNFFN 120

Query: 119 NFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQ 178
           +FREDHEMMH RDLQKLEGVLSPSHLEEMEFAH+LR SKVNIKICQYS EL++QYL K++
Sbjct: 121 SFREDHEMMHSRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSDELMMQYLRKSK 180

Query: 179 STKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLEN 238
           ST +LGI+NE INFQVSPGQP SISDD + VTLIGS+QDAANQIN+KE+HWGLLEDSLE 
Sbjct: 181 STIILGIVNEHINFQVSPGQPISISDDPDAVTLIGSSQDAANQINKKEIHWGLLEDSLEE 240

Query: 239 RLEKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLE 297
           RLEKTG  +SDSEK EGE KE ++DENKKR ++GGKQGASIKK KKDKA +ATAK  RLE
Sbjct: 241 RLEKTGGFLSDSEKTEGETKEGDMDENKKRSMDGGKQGASIKKSKKDKAASATAKAVRLE 300

Query: 298 ANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCA 357
           ANTV  APRVKP+L LPVMP EVEQSILEDLRNRV LSS  LPSVSFYTFINTHNGLNC+
Sbjct: 301 ANTVPAAPRVKPELPLPVMPAEVEQSILEDLRNRVQLSSTTLPSVSFYTFINTHNGLNCS 360

Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
           SIS DGSLVAGGFSDSSLKVWDMAKLGQQA +S LQGEND  P E ++GPN  KRSYTL+
Sbjct: 361 SISHDGSLVAGGFSDSSLKVWDMAKLGQQAGNSILQGENDAAPSEHVLGPNSGKRSYTLF 420

Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           QGHSGPV+SA+FSPLGDFILSSSADTT+RLWST+LNANLVCYKGHNYPVWDVQF+P GHY
Sbjct: 421 QGHSGPVHSATFSPLGDFILSSSADTTVRLWSTELNANLVCYKGHNYPVWDVQFSPVGHY 480

Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
           FAS+SHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SG
Sbjct: 481 FASASHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSG 540

Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
           ECVRIFIGHRSMILSLAMSPDGRYMASGDEDG+IMMWDL+SGRC++P+MGH SCVW+LA+
Sbjct: 541 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGSIMMWDLSSGRCISPMMGHHSCVWSLAF 600

Query: 598 RFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657
                                             SCE SLLASGSADCTVKLWDVTTSTK
Sbjct: 601 ----------------------------------SCESSLLASGSADCTVKLWDVTTSTK 626

Query: 658 VLKTEE-KSG-TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
             KTEE KSG T+RLR LKTLPTKSTPV +L+FSRRNLLFAAGALS++
Sbjct: 627 PAKTEESKSGNTHRLRFLKTLPTKSTPVSTLRFSRRNLLFAAGALSRS 674

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143295|ref|XP_002324907.1| predicted protein [Populus trichocarpa] gi|222866341|gb|EEF03472.1| predicted protein [Populus trichocarpa]

 Score = 1073 bits (2776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/708 (76%), Positives = 595/708 (84%), Gaps = 39/708 (5%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTN--PIDILNDPELSKFFRTFS 58
           MDE  VV+FV TYLKKKGF +AE A   EIQ+     N +   I I +DP+LS    + S
Sbjct: 1   MDEEAVVKFVETYLKKKGFKQAELAFHEEIQQQHQQQNNSNNAISIHSDPDLSSLLHSLS 60

Query: 59  ESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFN 118
           + ED PARYQDEYSKLRSW YSSLDLYKHELL VLYPVF+HC+MD+VAKGHIQEAR FFN
Sbjct: 61  QPEDSPARYQDEYSKLRSWAYSSLDLYKHELLRVLYPVFVHCYMDIVAKGHIQEARKFFN 120

Query: 119 NFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQ 178
           +FREDHEMMH RDLQKLEGVLSPSHLEEMEFAH+LR SKVNIKICQYS ELL+QYL K++
Sbjct: 121 SFREDHEMMHSRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSNELLMQYLRKSK 180

Query: 179 STKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLEN 238
            T +LGI+NE INFQVSPGQP SISDD + VTLIGS+QDAANQIN+KE+HWGLLEDSLE 
Sbjct: 181 WTIILGIVNEHINFQVSPGQPISISDDPDAVTLIGSSQDAANQINKKEIHWGLLEDSLEE 240

Query: 239 RLEKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLE 297
           RLEKTG  +SD+EK EGE KE ++DENKKR ++GGKQGASIKK KKDKA +AT K +R E
Sbjct: 241 RLEKTGGFLSDTEKTEGETKEGDMDENKKRSIDGGKQGASIKKSKKDKAASATTKIARPE 300

Query: 298 ANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCA 357
           ANTVS APRVKP+L LPVMPTEVEQSILEDLRNRV LSS  LPSVSFYTFINTHNGLNC+
Sbjct: 301 ANTVSAAPRVKPELPLPVMPTEVEQSILEDLRNRVQLSSVTLPSVSFYTFINTHNGLNCS 360

Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
           SIS DGSL+AGGFSDSSLKVWDMAKLG QA +S LQGENDT P E    PN  KRSYTL+
Sbjct: 361 SISHDGSLIAGGFSDSSLKVWDMAKLGHQAGNSILQGENDTAPSEQGQSPNSGKRSYTLF 420

Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           QGHSGPV+SA+FSPLGDFILSSSADTT+RLWSTKLNANLVCYKGHNYPVWDVQF+P G Y
Sbjct: 421 QGHSGPVHSATFSPLGDFILSSSADTTVRLWSTKLNANLVCYKGHNYPVWDVQFSPVGQY 480

Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
           FAS+SHDRTARIWSMDRIQPLRIMAGHLSDVDC++WH NCNYIATGSSDKTVRLWDV SG
Sbjct: 481 FASASHDRTARIWSMDRIQPLRIMAGHLSDVDCLQWHANCNYIATGSSDKTVRLWDVQSG 540

Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
           ECVRIFIGHRSMILSLAMSPDGRYMAS DEDGTIMMWDL+SGRC++PL+GH SCVW+LA+
Sbjct: 541 ECVRIFIGHRSMILSLAMSPDGRYMASADEDGTIMMWDLSSGRCISPLIGHNSCVWSLAF 600

Query: 598 RFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657
                                             SCEGSLLASGSADCTVKLWDVTTSTK
Sbjct: 601 ----------------------------------SCEGSLLASGSADCTVKLWDVTTSTK 626

Query: 658 VLKTEE-KSG-TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
             +TEE KSG TNRLR LKTLPTKSTPVY+L+FSRRNLLFAAGAL+K+
Sbjct: 627 APRTEESKSGNTNRLRLLKTLPTKSTPVYTLRFSRRNLLFAAGALAKS 674

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514986|ref|XP_003526182.1| PREDICTED: transcription initiation factor TFIID subunit 5-like [Glycine max]

 Score = 1068 bits (2762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/705 (74%), Positives = 587/705 (83%), Gaps = 45/705 (6%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           M++ ++V +V  +LKKKGF++ E   Q E Q NKS N +N +    +P+++     FS+ 
Sbjct: 1   MEDEKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKS-NTSNSV---LEPDIANHLLAFSQL 56

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           E GPAR+ D YS+LR+WTYSSLDLYKHELL VLYPVFIHCFMDLVAKGH+QEAR FFN F
Sbjct: 57  ETGPARFHDGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTF 116

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
           REDHEMMHLRDLQKLEGVLSP+HL+EMEFAHSLR SK NIKIC+YSYELLLQ+LH TQST
Sbjct: 117 REDHEMMHLRDLQKLEGVLSPNHLKEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQST 176

Query: 181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
            +LGIINE INFQV+PGQPS ISDD E VTL GS+Q+AANQINQKE+HWGLLEDSLE RL
Sbjct: 177 TILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANQINQKEIHWGLLEDSLEERL 236

Query: 241 EKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEAN 299
           EK G L+SDSEK EGE KE E DE KKR +EGGKQGAS+KK+KKDK  +AT K+++ EAN
Sbjct: 237 EKAGALLSDSEKGEGEAKEGENDETKKRSIEGGKQGASVKKVKKDKGGSATGKSAKPEAN 296

Query: 300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359
           T+ +APRVKP+L LPV+P E EQS+LEDLRNRV LSS ALPSVSFYTFINTHNGL+C+SI
Sbjct: 297 TIPSAPRVKPELPLPVIPAEAEQSVLEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSI 356

Query: 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
           S DGSL+AGGFSDSSLKVWDMAKLGQQ  SS  QGEN     E I G  G KR YTL+QG
Sbjct: 357 SHDGSLIAGGFSDSSLKVWDMAKLGQQQTSSLSQGEN-----EQIFGQGGGKRQYTLFQG 411

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
           HSGPVY+ASFSP+GDFILSSSAD+TIRLWSTKLNANLVCYKGHNYPVWDVQF+P GHYFA
Sbjct: 412 HSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFA 471

Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SGEC
Sbjct: 472 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGEC 531

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRF 599
           VR+F+GHR MILSLAMSPDGRYMASGDEDGTIMMWDL+SGRC+TPL+GHTSCVW+LA+  
Sbjct: 532 VRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAF-- 589

Query: 600 LLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL 659
                                           S EGS++ASGSADCTVKLWDV TSTKV 
Sbjct: 590 --------------------------------SSEGSVIASGSADCTVKLWDVNTSTKVS 617

Query: 660 KTEEKSGT-NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
           + EEK G+ NRLRSLKTLPTKSTPVYSL+FSRRNLLFAAGALSK+
Sbjct: 618 RAEEKGGSANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKS 662

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507277|ref|XP_003522395.1| PREDICTED: transcription initiation factor TFIID subunit 5-like [Glycine max]

 Score = 1062 bits (2746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/707 (74%), Positives = 588/707 (83%), Gaps = 43/707 (6%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           M++ ++V +V  +LKKKGF++ E   Q E Q NKS    N  + L +P+++     FS+ 
Sbjct: 1   MEDDKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKS----NTSNSLLEPDIANHLLAFSQL 56

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           E GPAR+ D YS+LR+WTYSSLDLYKHELL VLYPVFIHCFMDLVAKGH+QEAR FFN F
Sbjct: 57  ETGPARFHDGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTF 116

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
           REDHEMMHLRDLQKLEGVLSP+HLEEMEFAHSLR SK NIKIC+YSYELLLQ+LH TQST
Sbjct: 117 REDHEMMHLRDLQKLEGVLSPNHLEEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQST 176

Query: 181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
            +LGIINE INFQV+PGQPS ISDD E VTL GS+Q+AAN INQKE+HWGLLEDSLE RL
Sbjct: 177 TILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANLINQKEIHWGLLEDSLEERL 236

Query: 241 EKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQG-ASIKKLKKDKAINATAKTSRLEA 298
           EK G L+ DSEK EGE KE E DE KKR +EGGKQG AS+KK+KKDK  +AT K+++ EA
Sbjct: 237 EKAGALLLDSEKGEGEAKEGENDETKKRSIEGGKQGGASVKKVKKDKGGSATGKSAKPEA 296

Query: 299 NTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCAS 358
           +TV  APRVKP+L LPV+PTEVEQS+LEDLRNRV LSS ALPSVSFYTFINTHNGL+C+S
Sbjct: 297 STVPAAPRVKPELPLPVIPTEVEQSVLEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSS 356

Query: 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418
           IS DGSL+AGGFSDSSLKVWDMAKLGQQA SS  QGENDT+  E I G  G KR YTL+Q
Sbjct: 357 ISHDGSLIAGGFSDSSLKVWDMAKLGQQA-SSLSQGENDTSQNEQIFGQGGGKRQYTLFQ 415

Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
           GHSGPVY+ASFSP+GDFILSSSAD+TIRLWSTKLNANLVCYKGHNYPVWDVQF+P GHYF
Sbjct: 416 GHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYF 475

Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
           ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SGE
Sbjct: 476 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGE 535

Query: 539 CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYR 598
           CVR+F+GHR MILSLAMSPDGRYMASGDEDGTIMMWDL+SGRC+TPL+GHTSCVW+LA+ 
Sbjct: 536 CVRVFVGHRVMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAF- 594

Query: 599 FLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV 658
                                            S EGS++ASGSADCTVKLWDV  STKV
Sbjct: 595 ---------------------------------SSEGSIIASGSADCTVKLWDVNASTKV 621

Query: 659 LKTEEKSGT--NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
            + EEKSG+  +RLRSLKTL TKSTPVYSL+FSRRNLLFAAGALSK+
Sbjct: 622 SRAEEKSGSANSRLRSLKTLSTKSTPVYSLRFSRRNLLFAAGALSKS 668

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466033|ref|XP_003603301.1| Transcription initiation factor TFIID subunit [Medicago truncatula] gi|355492349|gb|AES73552.1| Transcription initiation factor TFIID subunit [Medicago truncatula]

 Score = 1046 bits (2706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/752 (68%), Positives = 586/752 (77%), Gaps = 85/752 (11%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           MDE +++ +V  YLKKKGF + E   Q E Q+NK+S+++N I    +P+++     FS+ 
Sbjct: 1   MDEDEILGYVTAYLKKKGFKQTEKVFQEEFQQNKTSSSSNSI---LEPDIANHLHAFSQL 57

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           E+GPARY + YS+LR+WTYSSLDLYKHELL VLYPVFIHCFMDLVAKGHIQEAR FF  F
Sbjct: 58  ENGPARYHNGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFTTF 117

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSY------------- 167
           REDHE+MHLRD+QKLEGVLSP+HL+EMEFAHSLR SK NIKIC+++              
Sbjct: 118 REDHELMHLRDIQKLEGVLSPTHLKEMEFAHSLRQSKFNIKICEHAVVVKSLFAKSYVLG 177

Query: 168 ----ELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQIN 223
               +LLLQ+LH TQST +LGIINE INFQV+ GQPS ISDD E VTL GS+Q+AANQ N
Sbjct: 178 STLAKLLLQHLHSTQSTTILGIINEHINFQVTSGQPSLISDDPEAVTLTGSSQEAANQTN 237

Query: 224 QKEVHWGLLEDSLENRLEKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLK 282
           QKE+HWGLLEDSLE RLEK G L+SDSEK +GE KE E DENKKR +E GKQGAS KK+K
Sbjct: 238 QKEIHWGLLEDSLEERLEKPGALLSDSEKGDGEAKEGENDENKKRSIEVGKQGASSKKMK 297

Query: 283 KDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSV 342
           KD+   AT K+++ E  TVS APRVK +L LP++PTEVE SILEDLRNRV LSS ALPSV
Sbjct: 298 KDRGGTATGKSAKPEVTTVSAAPRVKAELPLPIIPTEVEHSILEDLRNRVQLSSVALPSV 357

Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
           SFYTFINTHNGL+C+SIS DGSLVAGGFSDSSLKVWDMAKLGQQ  SS  QGENDT+  E
Sbjct: 358 SFYTFINTHNGLSCSSISHDGSLVAGGFSDSSLKVWDMAKLGQQPSSSLSQGENDTSQNE 417

Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
            ++G +G KR YTL+QGHSGPVY+ASF P+GDFILSSSAD+TIRLWSTKLNANLVCYKGH
Sbjct: 418 QMLGKSGGKRQYTLFQGHSGPVYAASFCPVGDFILSSSADSTIRLWSTKLNANLVCYKGH 477

Query: 463 NYPVWDVQ-----------------------------FNPQGHYFASSSHDRTARIWSMD 493
           NYPVWDVQ                             F+P GHYFASSSHDRTAR+WSMD
Sbjct: 478 NYPVWDVQPRESTSVNGKILYAHIFWKVVFISFSWMQFSPMGHYFASSSHDRTARVWSMD 537

Query: 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL 553
           RIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SGECVR+F+GHR MILSL
Sbjct: 538 RIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSL 597

Query: 554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDK 613
           +MSPDGRYMASGDEDGTIMMWDL+SGRCVTPL+GHTSCVW+LA+                
Sbjct: 598 SMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLVGHTSCVWSLAF---------------- 641

Query: 614 VSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG-TNRLRS 672
                             S EGS+LASGSADCTVKLWDV TSTKV +TEEK+G  NRLRS
Sbjct: 642 ------------------SSEGSILASGSADCTVKLWDVNTSTKVSRTEEKNGNANRLRS 683

Query: 673 LKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS 704
           LKTLPTKSTPV +L+FSRRNLLFAAGAL+K +
Sbjct: 684 LKTLPTKSTPVNTLRFSRRNLLFAAGALAKNA 715

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79520288|ref|NP_197897.3| transcription initiation factor TFIID subunit D4 [Arabidopsis thaliana] gi|39545918|gb|AAR28022.1| TAF5 [Arabidopsis thaliana] gi|332006023|gb|AED93406.1| transcription initiation factor TFIID subunit D4 [Arabidopsis thaliana]

 Score = 1045 bits (2701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/704 (73%), Positives = 583/704 (82%), Gaps = 40/704 (5%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           MD  Q+ EFV  YLKKKGFS A   L++   +N + ++   +D  NDPEL+K  R+FS+ 
Sbjct: 1   MDPEQINEFVVGYLKKKGFSSAAKDLESYHHQNNNGSSFTSVDYHNDPELTKLIRSFSQQ 60

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           ED P RY++ YSKLRSW Y+SLDLYKHELL V+YPVFIHC+MDLV KGH QEAR FFN+F
Sbjct: 61  EDDPTRYREGYSKLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARAFFNSF 120

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
           R+DHEM+HLRDLQKLEGVLSPSHLEEMEFA SLR SKVNIK CQYSYELLLQYLH T ST
Sbjct: 121 RKDHEMVHLRDLQKLEGVLSPSHLEEMEFARSLRKSKVNIKFCQYSYELLLQYLHSTVST 180

Query: 181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
            MLGIINE INFQV  GQP+S SDD E VT++GS QD AN INQKE+ WGLLEDSLE+RL
Sbjct: 181 LMLGIINEHINFQVYSGQPTSSSDDIEAVTIVGSFQDTANHINQKEIQWGLLEDSLEDRL 240

Query: 241 EKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEAN 299
           EKTG L+SDSEK +GE+K+ + D++KKR  E GKQG+S+KKLKKDKA NATAK +RLE  
Sbjct: 241 EKTGGLLSDSEKGQGESKDGDADDSKKRSTEIGKQGSSLKKLKKDKAGNATAKVARLETI 300

Query: 300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359
           TVS APRVKP+LALPVM T+VEQSILEDLRNRV LSS A+PSVSFYTF+NTHNGLNC+SI
Sbjct: 301 TVSPAPRVKPELALPVMSTDVEQSILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNCSSI 360

Query: 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
           S DGSLVAGGFSDSS+KVWDMAK+GQ A S  LQ END++ +   IGPNGR RSYTL  G
Sbjct: 361 SHDGSLVAGGFSDSSIKVWDMAKIGQ-AGSGALQAENDSSDQS--IGPNGR-RSYTLLLG 416

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
           HSGPVYSA+FSP GDF+LSSSADTTIRLWSTKLNANLVCYKGHNYPVWD QF+P GHYFA
Sbjct: 417 HSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFA 476

Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           S SHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV +GEC
Sbjct: 477 SCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGEC 536

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRF 599
           VRIFIGHRSM+LSLAMSPDGRYMASGDEDGTIMMWDL++ RC+TPLMGH SCVW+L+Y  
Sbjct: 537 VRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSY-- 594

Query: 600 LLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL 659
                                           S EGSLLASGSADCTVKLWDVT+STK+ 
Sbjct: 595 --------------------------------SGEGSLLASGSADCTVKLWDVTSSTKLT 622

Query: 660 KTEEKSG-TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702
           K EEK+G +NRLRSL+T PTKSTPV++L+FSRRNLLFAAGA+SK
Sbjct: 623 KAEEKNGNSNRLRSLRTFPTKSTPVHALRFSRRNLLFAAGAISK 666

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	704
TAIR|locus:2179300	669	TAF5 "AT5G25150" [Arabidopsis	0.842	0.886	0.770	8.7e-253
UNIPROTKB|E1BEN8	800	TAF5 "Uncharacterized protein"	0.471	0.415	0.450	1e-118
UNIPROTKB|E2RE41	801	TAF5 "Uncharacterized protein"	0.471	0.414	0.450	1.7e-118
MGI|MGI:2442144	801	Taf5 "TAF5 RNA polymerase II,	0.471	0.414	0.450	2.7e-118
RGD|1311332	798	Taf5 "TAF5 RNA polymerase II,	0.471	0.416	0.450	3.5e-118
UNIPROTKB|Q15542	800	TAF5 "Transcription initiation	0.471	0.415	0.450	5.6e-118
CGD|CAL0000165	798	orf19.536 [Candida albicans (t	0.451	0.398	0.440	4e-110
UNIPROTKB|E1C4U3	780	E1C4U3 "Uncharacterized protei	0.738	0.666	0.378	1.7e-109
DICTYBASE|DDB_G0287337	948	taf5 "TFIID subunit" [Dictyost	0.899	0.667	0.319	1.7e-105
ZFIN|ZDB-GENE-051120-180	756	taf5 "TAF5 RNA polymerase II,	0.738	0.687	0.387	1.7e-103

TAIR|locus:2179300 TAF5 "AT5G25150" [Arabidopsis thaliana (taxid:3702)]

 Score = 2434 (861.9 bits), Expect = 8.7e-253, P = 8.7e-253
 Identities = 461/598 (77%), Positives = 516/598 (86%)

Query:     1 MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
             MD  Q+ EFV  YLKKKGFS A   L++   +N + ++   +D  NDPEL+K  R+FS+ 
Sbjct:     1 MDPEQINEFVVGYLKKKGFSSAAKDLESYHHQNNNGSSFTSVDYHNDPELTKLIRSFSQQ 60

Query:    61 EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
             ED P RY++ YSKLRSW Y+SLDLYKHELL V+YPVFIHC+MDLV KGH QEAR FFN+F
Sbjct:    61 EDDPTRYREGYSKLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARAFFNSF 120

Query:   121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
             R+DHEM+HLRDLQKLEGVLSPSHLEEMEFA SLR SKVNIK CQYSYELLLQYLH T ST
Sbjct:   121 RKDHEMVHLRDLQKLEGVLSPSHLEEMEFARSLRKSKVNIKFCQYSYELLLQYLHSTVST 180

Query:   181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
              MLGIINE INFQV  GQP+S SDD E VT++GS QD AN INQKE+ WGLLEDSLE+RL
Sbjct:   181 LMLGIINEHINFQVYSGQPTSSSDDIEAVTIVGSFQDTANHINQKEIQWGLLEDSLEDRL 240

Query:   241 EKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEAN 299
             EKTG L+SDSEK +GE+K+ + D++KKR  E GKQG+S+KKLKKDKA NATAK +RLE  
Sbjct:   241 EKTGGLLSDSEKGQGESKDGDADDSKKRSTEIGKQGSSLKKLKKDKAGNATAKVARLETI 300

Query:   300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359
             TVS APRVKP+LALPVM T+VEQSILEDLRNRV LSS A+PSVSFYTF+NTHNGLNC+SI
Sbjct:   301 TVSPAPRVKPELALPVMSTDVEQSILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNCSSI 360

Query:   360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
             S DGSLVAGGFSDSS+KVWDMAK+GQ A S  LQ END++ +   IGPNGR RSYTL  G
Sbjct:   361 SHDGSLVAGGFSDSSIKVWDMAKIGQ-AGSGALQAENDSSDQS--IGPNGR-RSYTLLLG 416

Query:   420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
             HSGPVYSA+FSP GDF+LSSSADTTIRLWSTKLNANLVCYKGHNYPVWD QF+P GHYFA
Sbjct:   417 HSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFA 476

Query:   480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
             S SHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV +GEC
Sbjct:   477 SCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGEC 536

Query:   540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
             VRIFIGHRSM+LSLAMSPDGRYMASGDEDGTIMMWDL++ RC+TPLMGH SCVW+L+Y
Sbjct:   537 VRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSY 594

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

UNIPROTKB|E1BEN8 TAF5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 749 (268.7 bits), Expect = 1.0e-118, Sum P(4) = 1.0e-118
 Identities = 158/351 (45%), Positives = 211/351 (60%)

Query:   257 KEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVM 316
             KE EI+       E G+      K KK K  +  +K+ + + N    AP   P   +P +
Sbjct:   378 KEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN----AP---PQNRIP-L 429

Query:   317 PTEVEQSILEDLRN------RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
             P   +   L+ + N      RV L    LPS+ FYTF+N + GL    ++ D SL+AGGF
Sbjct:   430 PELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGF 489

Query:   371 SDSSLKVWDMA--KLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             +DS+++VW +   KL   +QA    L  +      E I+          LY GHSGPVY 
Sbjct:   490 ADSTVRVWSVTPKKLRSVKQAADLSLIDKESDDVLERIMDEKTASELKILY-GHSGPVYG 548

Query:   427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
             ASFSP  +++LSSS D T+RLWS +    LV YKGHNYPVWD QF+P G+YF S  HDR 
Sbjct:   549 ASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRV 608

Query:   487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
             AR+W+ D  QPLRI AGHL+DV+C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH
Sbjct:   609 ARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGH 668

Query:   547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
             +  I SL  SP+GR++A+G  DG +++WD+  G  V  L GHT  V +L +
Sbjct:   669 KGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRF 719

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|E2RE41 TAF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 749 (268.7 bits), Expect = 1.7e-118, Sum P(4) = 1.7e-118
 Identities = 158/351 (45%), Positives = 211/351 (60%)

Query:   257 KEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVM 316
             KE EI+       E G+      K KK K  +  +K+ + + N    AP   P   +P +
Sbjct:   379 KEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN----AP---PQNRIP-L 430

Query:   317 PTEVEQSILEDLRN------RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
             P   +   L+ + N      RV L    LPS+ FYTF+N + GL    ++ D SL+AGGF
Sbjct:   431 PELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGF 490

Query:   371 SDSSLKVWDMA--KLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             +DS+++VW +   KL   +QA    L  +      E I+          LY GHSGPVY 
Sbjct:   491 ADSTVRVWSVTPKKLRSVKQAADLSLIDKESDDVLERIMDEKTASELKILY-GHSGPVYG 549

Query:   427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
             ASFSP  +++LSSS D T+RLWS +    LV YKGHNYPVWD QF+P G+YF S  HDR 
Sbjct:   550 ASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRV 609

Query:   487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
             AR+W+ D  QPLRI AGHL+DV+C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH
Sbjct:   610 ARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGH 669

Query:   547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
             +  I SL  SP+GR++A+G  DG +++WD+  G  V  L GHT  V +L +
Sbjct:   670 KGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRF 720

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

MGI|MGI:2442144 Taf5 "TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Mus musculus (taxid:10090)]

 Score = 748 (268.4 bits), Expect = 2.7e-118, Sum P(4) = 2.7e-118
 Identities = 158/351 (45%), Positives = 211/351 (60%)

Query:   257 KEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVM 316
             KE EI+       E G+      K KK K  +  +K+ + + N    AP   P   +P +
Sbjct:   379 KEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN----AP---PQNRIP-L 430

Query:   317 PTEVEQSILEDLRN------RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
             P   +   L+ + N      RV L    LPS+ FYTF+N + GL    ++ D SL+AGGF
Sbjct:   431 PELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGF 490

Query:   371 SDSSLKVWDMA--KLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             +DS+++VW +   KL   +QA    L  +      E I+          LY GHSGPVY 
Sbjct:   491 ADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY-GHSGPVYG 549

Query:   427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
             ASFSP  +++LSSS D T+RLWS +    LV YKGHNYPVWD QF+P G+YF S  HDR 
Sbjct:   550 ASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRV 609

Query:   487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
             AR+W+ D  QPLRI AGHL+DV+C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH
Sbjct:   610 ARLWATDHYQPLRIFAGHLADVNCTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGH 669

Query:   547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
             +  I SL  SP+GR++A+G  DG +++WD+  G  V  L GHT  V +L +
Sbjct:   670 KGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRF 720

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005669 "transcription factor TFIID complex" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006352 "DNA-dependent transcription, initiation" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISO

GO:0016573 "histone acetylation" evidence=ISO

GO:0033276 "transcription factor TFTC complex" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0046983 "protein dimerization activity" evidence=ISO

RGD|1311332 Taf5 "TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Rattus norvegicus (taxid:10116)]

 Score = 747 (268.0 bits), Expect = 3.5e-118, Sum P(4) = 3.5e-118
 Identities = 158/351 (45%), Positives = 211/351 (60%)

Query:   257 KEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVM 316
             KE EI+       E G+      K KK K  +  +K+ + + N    AP   P   +P +
Sbjct:   376 KEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN----AP---PQNRIP-L 427

Query:   317 PTEVEQSILEDLRN------RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
             P   +   L+ + N      RV L    LPS+ FYTF+N + GL    ++ D SL+AGGF
Sbjct:   428 PELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGF 487

Query:   371 SDSSLKVWDMA--KLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             +DS+++VW +   KL   +QA    L  +      E I+          LY GHSGPVY 
Sbjct:   488 ADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY-GHSGPVYG 546

Query:   427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
             ASFSP  +++LSSS D T+RLWS +    LV YKGHNYPVWD QF+P G+YF S  HDR 
Sbjct:   547 ASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRV 606

Query:   487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
             AR+W+ D  QPLRI AGHL+DV+C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH
Sbjct:   607 ARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGH 666

Query:   547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
             +  I SL  SP+GR++A+G  DG +++WD+  G  V  L GHT  V +L +
Sbjct:   667 KGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRF 717

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0004402 "histone acetyltransferase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005669 "transcription factor TFIID complex" evidence=IEA;ISO

GO:0006352 "DNA-dependent transcription, initiation" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0015629 "actin cytoskeleton" evidence=IEA;ISO

GO:0016573 "histone acetylation" evidence=ISO

GO:0033276 "transcription factor TFTC complex" evidence=IEA;ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0046983 "protein dimerization activity" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q15542 TAF5 "Transcription initiation factor TFIID subunit 5" [Homo sapiens (taxid:9606)]

 Score = 747 (268.0 bits), Expect = 5.6e-118, Sum P(4) = 5.6e-118
 Identities = 158/351 (45%), Positives = 211/351 (60%)

Query:   257 KEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVM 316
             KE EI+       E G+      K KK K  +  +K+ + + N    AP   P   +P +
Sbjct:   378 KEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN----AP---PQNRIP-L 429

Query:   317 PTEVEQSILEDLRN------RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
             P   +   L+ + N      RV L    LPS+ FYTF+N + GL    ++ D SL+AGGF
Sbjct:   430 PELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGF 489

Query:   371 SDSSLKVWDMA--KLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             +DS+++VW +   KL   +QA    L  +      E I+          LY GHSGPVY 
Sbjct:   490 ADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY-GHSGPVYG 548

Query:   427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
             ASFSP  +++LSSS D T+RLWS +    LV YKGHNYPVWD QF+P G+YF S  HDR 
Sbjct:   549 ASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRV 608

Query:   487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
             AR+W+ D  QPLRI AGHL+DV+C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH
Sbjct:   609 ARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGH 668

Query:   547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
             +  I SL  SP+GR++A+G  DG +++WD+  G  V  L GHT  V +L +
Sbjct:   669 KGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRF 719

GO:0019048 "virus-host interaction" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IDA;TAS

GO:0005669 "transcription factor TFIID complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0046983 "protein dimerization activity" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0033276 "transcription factor TFTC complex" evidence=IDA

GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA

GO:0016568 "chromatin modification" evidence=IC

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

CGD|CAL0000165 orf19.536 [Candida albicans (taxid:5476)]

 Score = 719 (258.2 bits), Expect = 4.0e-110, Sum P(3) = 4.0e-110
 Identities = 151/343 (44%), Positives = 215/343 (62%)

Query:   266 KRPVEG--GKQGASIKKLKKDKAINATAKTSRLEANTVSTAPR---VKPDLALPVMPT-E 319
             K P++    K+  +  K+K +K      KT   E   ++   +   V+  L LP+    +
Sbjct:   366 KLPIDPDVAKEVEAELKIKDEKIEPVNNKTLTKEFQDMTKPDQDSPVRESLPLPLKDAND 425

Query:   320 VEQSIL--EDLRNRVHLSS--AALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSL 375
             +++ I+  ED R+++ L +  A+LPSV  YTF NT+N + C   + D +LVA GF DS +
Sbjct:   426 IKKMIIQVEDSRSKIKLGAIQASLPSVCMYTFHNTNNNMTCIEFNDDSTLVAAGFQDSYI 485

Query:   376 KVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF 435
             K+W    L  + + S L+ +    P+E     N RK       GHSGPVY  SFSP   +
Sbjct:   486 KLWS---LDGKPLKSVLKRDRHK-PQE-----NTRKLI-----GHSGPVYGVSFSPDNKY 531

Query:   436 ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI 495
             +LS S D T+RLWS      LV YKGH  PVWDV+F+P GHYF ++SHD+TAR+W+ D I
Sbjct:   532 LLSCSEDKTVRLWSLDTYTALVSYKGHTQPVWDVKFSPLGHYFVTASHDQTARLWATDHI 591

Query:   496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM 555
              PLRI AGH++DVDCV +H N NY+ TGSSDKT R+WDV +G CVR+F+GH + +  LA+
Sbjct:   592 YPLRIFAGHINDVDCVEFHPNSNYVFTGSSDKTCRMWDVHTGNCVRVFLGHTNSVNCLAV 651

Query:   556 SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT-SCVWTLAY 597
             SPDGR++ASG EDG I +WD+ SGR +  + GH  + +++LA+
Sbjct:   652 SPDGRWLASGGEDGIICVWDIGSGRRLKSMRGHARASLYSLAF 694

GO:0000124 "SAGA complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0046695 "SLIK (SAGA-like) complex" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0016573 "histone acetylation" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|E1C4U3 E1C4U3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 964 (344.4 bits), Expect = 1.7e-109, Sum P(2) = 1.7e-109
 Identities = 211/558 (37%), Positives = 317/558 (56%)

Query:    46 NDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLV 105
             + P++S     +++  D P  Y++ YS L+++   SLD ++ EL  + YP+F+H +++LV
Sbjct:   174 DQPDVSAVLSAYNQQGD-PTLYEEYYSGLKNFIECSLDCHRAELSQLFYPLFVHMYLELV 232

Query:   106 AKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQY 165
                H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++I + 
Sbjct:   233 YNQHESEAKSFFERFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRD 292

Query:   166 SYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAANQINQ 224
             SY+LL ++L + Q+ ++  I+ E +   +  G P S    DA + +L G   +A  + N+
Sbjct:   293 SYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAG---EAKREANK 349

Query:   225 KEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKD 284
              +V +GLL++       +  +  D E  EGEN+E +    KK+  +    G+  KK  +D
Sbjct:   350 AKVFFGLLKEP------EFDVPLDDEDEEGENEEGK---PKKKKAKRDSVGSKSKK--QD 398

Query:   285 KAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSF 344
                NA  +      N +   P +K    L  +        +++   RV L    LPS+ F
Sbjct:   399 P--NAPPQ------NRIPL-PELKDSDKLDKVMN------MKEAARRVRLGPECLPSICF 443

Query:   345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG-----LQGENDTT 399
             YTF+N + GL    I+ D S++ GGF+DS+++VW +     ++V +      +  E+D  
Sbjct:   444 YTFLNAYQGLTAVDITDDSSMIVGGFADSTVRVWSVTPKKLRSVKAAADLSLIDKESDDV 503

Query:   400 PREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY 459
               E I+          LY GHSGPVY  SFSP  +++LS S D T+RLWS +    LV Y
Sbjct:   504 -LERIMDEKTASELKILY-GHSGPVYGTSFSPDRNYLLSCSEDGTVRLWSLQTFTCLVGY 561

Query:   460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
             KGHNYPVWD QF+P G+YF S  HDR AR+W+ D  QPLRI AGHL+DV C R+H N NY
Sbjct:   562 KGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNY 621

Query:   520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
             IATGS+D+TVRLWDV +G CVRIF GH+  I SLA SP+GR++A+G  DG +++WD+  G
Sbjct:   622 IATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGRFLATGATDGRVLLWDIGHG 681

Query:   580 RCVTPLMGHTSCVWTLAY 597
               V  L GHT  ++ L +
Sbjct:   682 LMVGELKGHTDTIYALRF 699

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

DICTYBASE|DDB_G0287337 taf5 "TFIID subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 840 (300.8 bits), Expect = 1.7e-105, Sum P(3) = 1.7e-105
 Identities = 217/680 (31%), Positives = 348/680 (51%)

Query:    33 NKSSNNT--NPIDILNDPELSKFFRTFSESEDG----PARYQDEYSKLRSWTYSSLDLYK 86
             N+++ NT  + +   +D EL+++   ++ S  G    P  Y ++Y KL +W +SSLD+YK
Sbjct:   240 NQTNINTVTDNLGSSDDQELAQYLHMYNSSNKGDTSNPQNYLEQYKKLGNWIHSSLDIYK 299

Query:    87 HELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEE 146
             +ELL +LYPVF+H ++DL+ KG+ Q+AR        DHE     DL+ L G+ +  HL+E
Sbjct:   300 NELLSILYPVFVHSYIDLITKGYPQQARELMEKIGPDHEEYFGDDLKLLRGISNTDHLKE 359

Query:   147 MEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDA 206
              E     R+++ NIK+C YS+ELL+ +LH++    +LG+IN+ I+  VS  +P  I D+ 
Sbjct:   360 NELVDLFRNNRWNIKMCAYSFELLMSFLHQSNFILLLGLINQYIHINVSNLRPGFIDDEQ 419

Query:   207 EIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGE--------NKE 258
               ++   S +DA + +N   +++   +   E+ +    L+   EK + E        +  
Sbjct:   420 YSISF-QSEKDAGD-LNSTPINYHAFKPEFEDDV----LVQQKEKQQLEQGRILPLTDPN 473

Query:   259 AEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPT 318
             A +      P         I KLKK        K  R+         +++ ++ +P +  
Sbjct:   474 APLPPVVAPPPPPPPTSGYIPKLKKKDKKKKEVKDERMS--------KIESNVPIPNLTE 525

Query:   319 EVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVW 378
               E  ++ED    V LSS+ LPS+ FYT  NT+ GLN   IS+D  LVAGGFSDSS+K+W
Sbjct:   526 RFENELMEDFTKCVSLSSSHLPSICFYTIFNTYQGLNTTDISKDAQLVAGGFSDSSVKIW 585

Query:   379 DMAKLGQQAVSSGLQGENDTTPREDII--G--PNGR----KRSYTLYQGHSGPVYSASFS 430
             ++ ++ +Q +    Q +     +++    G   NG       S +     SG     + S
Sbjct:   586 NLKEMKEQRLQQQQQQQQQQQQQQNSNQNGYFENGNFASSASSASSAMNGSGNNNENNKS 645

Query:   431 PLGDFILSS-SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI 489
                +  L+S S+ ++ +L   +  +    + GH+ PV+   F+P   Y  S S D TAR+
Sbjct:   646 TTANNNLNSGSSSSSNKLQKQQKESEFKTFLGHSGPVYGCSFSPDSQYLLSCSEDTTARL 705

Query:   490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM 549
             WSM+ +  L    GH   V  V +     Y AT S D+T RLW  +    +RIF GH S 
Sbjct:   706 WSMETMSNLVCYKGHNFPVWDVSFSPFGFYFATASHDRTARLWTTNHISPLRIFTGHLSD 765

Query:   550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY----RFLLLVTN 605
               ++   P+  Y+A+G  D +  +W++ +G+CV   MGH + ++T+A+    R L     
Sbjct:   766 CNTVRFHPNINYLATGSNDKSARLWEIQTGKCVRIFMGHRAPIYTVAFSPDGRLLATAGE 825

Query:   606 AYLKISDKVSTGFLFYSLT----IIYFGCASCEGSLLASGSADCTVKLWDVTTS-TKVLK 660
                 I   +STG     +      +Y    SC+GS+LASGS+DCTV+LWDV  +    L 
Sbjct:   826 DTSVILWDLSTGKKVKKMDGHTKCVYSLDFSCDGSILASGSSDCTVRLWDVKKAFNSSLS 885

Query:   661 TEEKSGTN-RLRSLKTLPTK 679
             T+  S  N   R  KTL +K
Sbjct:   886 TQPSSLINDESRKRKTLKSK 905

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016568 "chromatin modification" evidence=ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0005669 "transcription factor TFIID complex" evidence=ISS

GO:0000124 "SAGA complex" evidence=ISS

GO:0006413 "translational initiation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

ZFIN|ZDB-GENE-051120-180 taf5 "TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)]

 Score = 972 (347.2 bits), Expect = 1.7e-103, Sum P(2) = 1.7e-103
 Identities = 216/558 (38%), Positives = 319/558 (57%)

Query:    46 NDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLV 105
             + P++S     +S+  D P+ Y+  YS L+ +  S LD ++ EL  + YP+F+H +++LV
Sbjct:   150 DQPDVSVVLSAYSQQGD-PSLYKVYYSDLKKFIESVLDCHRAELSQLFYPLFVHMYLELV 208

Query:   106 AKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQY 165
                H  EA+ FF+ F  D E  +  DL+ L G+    H++  E     R S+  ++I + 
Sbjct:   209 YNNHESEAKAFFDKFSGDQECYYEDDLRVLCGLTKKEHMKGNEALLDFRTSRFVLRISRD 268

Query:   166 SYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAANQINQ 224
             SY+LL ++L + Q+ ++  II E +   +  G P S S  D+   +L G   +A  ++N+
Sbjct:   269 SYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSMSGSLAG---EARREVNK 325

Query:   225 KEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKD 284
              +V +GLL+   E  +E   +  D E  E EN+E +    KK+  +    G+  KK  +D
Sbjct:   326 VKVFYGLLK---EPEIE---VPLDDEDEEAENEEGK---PKKKKTKKDSMGSKSKK--QD 374

Query:   285 KAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSF 344
                NA       + N +   P +K    L  +        +++   R+ L    LPS+ F
Sbjct:   375 P--NAP------QQNRIPL-PELKDSDKLDKI------MYMKESTKRIRLGPETLPSICF 419

Query:   345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG-----LQGENDTT 399
             YTF+N + GL     + D SL+AGGF+DS+++VW +     + V S      +  E+D  
Sbjct:   420 YTFLNAYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDV 479

Query:   400 PREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY 459
               E I+       S  L+ GHSGPVY  SFSP  +++LSSS D TIRLWS +    LV Y
Sbjct:   480 -LERIMDEKTSSESKILH-GHSGPVYGVSFSPDRNYLLSSSEDGTIRLWSLQTFTCLVGY 537

Query:   460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
             KGHNYPVWD QF+P G+YF S  HDR AR+W+ D  QPLRI AGHL+DV C R+H N NY
Sbjct:   538 KGHNYPVWDTQFSPFGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNY 597

Query:   520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
             +ATGSSD+TVRLWDV +G CVRIF GH+  I SLA SP+G+++ASG  DG +++WD+  G
Sbjct:   598 VATGSSDRTVRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGKFLASGSTDGRVLLWDIGHG 657

Query:   580 RCVTPLMGHTSCVWTLAY 597
               +  L GHT  ++ L +
Sbjct:   658 LMIAELKGHTGTIYALKF 675

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P38129	TAF5_YEAST	No assigned EC number	0.3100	0.9076	0.8007	yes	no
P49846	TAF5_DROME	No assigned EC number	0.3207	0.8323	0.8323	yes	no
O13282	TAF5_SCHPO	No assigned EC number	0.3245	0.8366	0.9160	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	704
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-65
pfam04494	141	pfam04494, TFIID_90kDa, WD40 associated region in	1e-55
cd08044	133	cd08044, TAF5_NTD2, TAF5_NTD2 is the second conser	1e-48
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-48
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-36
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-34
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-32
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-30
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-28
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-24
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-20
smart00320	40	smart00320, WD40, WD40 repeats	6e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-09
smart00320	40	smart00320, WD40, WD40 repeats	3e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-08
smart00320	40	smart00320, WD40, WD40 repeats	8e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-07
smart00320	40	smart00320, WD40, WD40 repeats	5e-07
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	6e-07
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	9e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	9e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	4e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  217 bits (555), Expect = 3e-65
 Identities = 100/296 (33%), Positives = 157/296 (53%), Gaps = 25/296 (8%)

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
            +GH+G V   +FSP G  + + S D TI++W  +    L   KGH  PV DV  +  G 
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64

Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           Y AS S D+T R+W ++  + +R + GH S V  V +  +   +++ S DKT+++WDV +
Sbjct: 65  YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLA 596
           G+C+    GH   + S+A SPDG ++AS  +DGTI +WDL +G+CV  L GHT  V ++A
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA 184

Query: 597 Y-----RFLLLVTNAYLKISDKVSTGFLFYSLT----IIYFGCASCEGSLLASGSADCTV 647
           +     + L   ++  +K+ D +STG    +L      +     S +G LLASGS D T+
Sbjct: 185 FSPDGEKLLSSSSDGTIKLWD-LSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243

Query: 648 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
           ++WD+ T                  ++TL   +  V SL +S      A+G+   T
Sbjct: 244 RVWDLRT---------------GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT 284

Length = 289

>gnl|CDD|203028 pfam04494, TFIID_90kDa, WD40 associated region in TFIID subunit

 Score =  186 bits (474), Expect = 1e-55
 Identities = 58/137 (42%), Positives = 89/137 (64%), Gaps = 3/137 (2%)

Query: 58  SESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFF 117
           S  E  P +Y+  YS LR+W   SLD+YK EL  +LYP+F+H ++DLVAKGH  EAR+FF
Sbjct: 5   SPEESDPEQYERAYSLLRNWIEDSLDIYKPELSRLLYPLFVHSYLDLVAKGHPSEARSFF 64

Query: 118 NNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKT 177
           + F  D E +H  D++KL  +  P HL+E E A + R +K  I++ + S+ LLL++L + 
Sbjct: 65  DKFHGDFEQLHGEDIEKLRSISLPEHLKENELARAFRDNKYRIRLSRDSFSLLLRFLQEN 124

Query: 178 QST---KMLGIINERIN 191
           ++T    +L I+N+ + 
Sbjct: 125 ENTGGSLLLRILNQHLQ 141

This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown. Length = 141

>gnl|CDD|176269 cd08044, TAF5_NTD2, TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

 Score =  166 bits (423), Expect = 1e-48
 Identities = 58/133 (43%), Positives = 86/133 (64%)

Query: 64  PARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFRED 123
           P  Y+  YSKLR W  SSLD+YK+EL  +LYP+F+H ++DLVA GH++EA++FF  F  D
Sbjct: 1   PNDYEQAYSKLRKWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGD 60

Query: 124 HEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKML 183
            E  H  D++KL  + +P HL+E E A   R +K  I++ + +Y LLL++L     + +L
Sbjct: 61  FEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLLRFLESWGGSLLL 120

Query: 184 GIINERINFQVSP 196
            I+NE I+  V  
Sbjct: 121 KILNEHIDIDVRD 133

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. TAF5 has a paralog gene (TAF5L) which has a redundant function. Several hypotheses are proposed for TAFs functions such as serving as activator-binding sites, core-promoter recognition or a role in essential catalytic activity. C-terminus of TAF5 contains six WD40 repeats that likely form a closed beta propeller structure and may be involved in protein-protein interaction. The first part of the TAF5 N-terminal (TAF5_NTD1) homodimerizes in the absence of other TAFs. The second conserved N-terminal part of TAF5 (TAF5_NTD2) has an alpha-helical domain. One study has shown that TAF5_NTD2 homodimerizes only at high concentration of calcium but not any other metals. No dimerization was observed in other structural studies of TAF_NTD2. Several TAFs interact via histone-fold (HFD) motifs; HFD is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamer. However, TAF5 does not have a HFD motif. Length = 133

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  170 bits (434), Expect = 4e-48
 Identities = 76/227 (33%), Positives = 113/227 (49%), Gaps = 34/227 (14%)

Query: 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK 411
           + ++  + S DG +++    D ++KVWD+                               
Sbjct: 94  SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT----------------------- 130

Query: 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST---KLNANLVCYKGHNYPVWD 468
                 +GH+  V S +FSP G F+ SSS D TI+LW     K  A L    GH   V  
Sbjct: 131 -----LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL---TGHTGEVNS 182

Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
           V F+P G    SSS D T ++W +   + L  + GH + V+ V +  +   +A+GS D T
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242

Query: 529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
           +R+WD+ +GECV+   GH + + SLA SPDG+ +ASG  DGTI +WD
Sbjct: 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  139 bits (351), Expect = 1e-36
 Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 29/187 (15%)

Query: 348 INTHNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406
           +  H   +N  + S DG+ VA    D ++K+WD+                          
Sbjct: 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG----------------------- 167

Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV 466
                +      GH+G V S +FSP G+ +LSSS+D TI+LW       L   +GH   V
Sbjct: 168 -----KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGV 222

Query: 467 WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD 526
             V F+P G+  AS S D T R+W +   + ++ ++GH + V  + W  +   +A+GS+D
Sbjct: 223 NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282

Query: 527 KTVRLWD 533
            T+R+WD
Sbjct: 283 GTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  136 bits (342), Expect = 3e-34
 Identities = 98/326 (30%), Positives = 155/326 (47%), Gaps = 68/326 (20%)

Query: 345 YTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403
            T     + ++  + S DG  L+A G SD ++++WD++                      
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST--------------------- 230

Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGH 462
                  K   +   GHS  V S SFSP G  + S S+D TIRLW  + +++L+    GH
Sbjct: 231 ------GKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283

Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHINCNYI 520
           +  V  V F+P G   AS S D T R+W ++  ++     + GH   V  + +  + + +
Sbjct: 284 SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL 343

Query: 521 ATG-SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
            +G S D T+RLWD+ +G+ ++   GH S +LS++ SPDGR ++SG  DGT+ +WDL++G
Sbjct: 344 VSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG 402

Query: 580 RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA 639
             +  L GHTS V +L +                                  S +G  LA
Sbjct: 403 SLLRNLDGHTSRVTSLDF----------------------------------SPDGKSLA 428

Query: 640 SGSADCTVKLWDVTTSTKVLKTEEKS 665
           SGS+D T++LWD+ TS K +      
Sbjct: 429 SGSSDNTIRLWDLKTSLKSVSFSPDG 454

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  131 bits (330), Expect = 1e-32
 Identities = 113/402 (28%), Positives = 179/402 (44%), Gaps = 54/402 (13%)

Query: 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND 397
           +LP +S        + +   + S DG L+  G SD ++K+WD      + +   L+G +D
Sbjct: 52  SLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWD--LDNGEKLIKSLEGLHD 109

Query: 398 TTPREDIIG----------------------PNGRKRSYTLYQGHSGPVYSASFSPLGDF 435
           ++  +  +                        +   +     +GHS  V S +FSP G  
Sbjct: 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKL 169

Query: 436 ILS-SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMD 493
           + S SS D TI+LW  +    L    GH  PV  + F+P G    AS S D T R+W + 
Sbjct: 170 LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS 229

Query: 494 RIQPLRI-MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV-SSGECVRIFIGHRSMIL 551
             + LR  ++GH   V    +  + + +A+GSSD T+RLWD+ SS   +R   GH S +L
Sbjct: 230 TGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288

Query: 552 SLAMSPDGRYMASGDEDGTIMMWDLASGRCV--TPLMGHTSCVWTLAYRFLLLVTNAYLK 609
           S+A SPDG+ +ASG  DGT+ +WDL +G+ +    L GH   V +L++     +  +   
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348

Query: 610 ISDKVSTGFLFYSLTIIYFGCASCEGSL--------LASGSADCTVKLWDVTTSTKVLKT 661
               +    L     +      S   S+        ++SGS D TV+LWD+         
Sbjct: 349 DDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDL--------- 399

Query: 662 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
                 +    L+ L   ++ V SL FS      A+G+   T
Sbjct: 400 ------STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  125 bits (314), Expect = 1e-30
 Identities = 81/242 (33%), Positives = 119/242 (49%), Gaps = 31/242 (12%)

Query: 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403
             + ++ H+    +S S DGSL+A G SD ++++WD+                       
Sbjct: 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS------------------ 275

Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKG 461
                          GHS  V S +FSP G  + S S+D T+RLW  +    L     KG
Sbjct: 276 ---------LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG 326

Query: 462 HNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
           H  PV  + F+P G    S  S D T R+W +   +PL+ + GH S+V  V +  +   +
Sbjct: 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVV 385

Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580
           ++GS+D TVRLWD+S+G  +R   GH S + SL  SPDG+ +ASG  D TI +WDL +  
Sbjct: 386 SSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSL 445

Query: 581 CV 582
             
Sbjct: 446 KS 447

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  118 bits (295), Expect = 4e-28
 Identities = 93/304 (30%), Positives = 147/304 (48%), Gaps = 17/304 (5%)

Query: 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGH 462
              +    S  L +GH   + S +FSP G+ +LS S+D TI+LW       L+      H
Sbjct: 49  SLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH 108

Query: 463 NYPVWDVQF-NPQGHYFAS--SSHDRTARIWS-MDRIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V  +   +P G+      SS D T ++W      + +R + GH   V  + +  +  
Sbjct: 109 DSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK 168

Query: 519 YIATGSS-DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWDL 576
            +A+GSS D T++LWD+ +G+ +    GH   + SLA SPDG  + ASG  DGTI +WDL
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Query: 577 ASGRCVTP-LMGHT-SCVWTLAYRFLLLVT---NAYLKISDKVSTGFLFYSLTI----IY 627
           ++G+ +   L GH+ S V + +    LL +   +  +++ D  S+  L  +L+     + 
Sbjct: 229 STGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288

Query: 628 FGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ 687
               S +G LLASGS+D TV+LWD+ T   +     K     + SL   P  S  V    
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348

Query: 688 FSRR 691
               
Sbjct: 349 DDGT 352

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  113 bits (285), Expect = 7e-28
 Identities = 63/207 (30%), Positives = 91/207 (43%), Gaps = 49/207 (23%)

Query: 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556
             R + GH   V CV +  +   +ATGS D T+++WD+ +GE +R   GH   +  +A S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVST 616
            DG Y+ASG  D TI +WDL +G CV  L GHTS V ++A+                   
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAF------------------- 101

Query: 617 GFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL 676
                          S +G +L+S S D T+K+WDV T   +                TL
Sbjct: 102 ---------------SPDGRILSSSSRDKTIKVWDVETGKCL---------------TTL 131

Query: 677 PTKSTPVYSLQFSRRNLLFAAGALSKT 703
              +  V S+ FS      A+ +   T
Sbjct: 132 RGHTDWVNSVAFSPDGTFVASSSQDGT 158

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  107 bits (267), Expect = 1e-24
 Identities = 92/309 (29%), Positives = 148/309 (47%), Gaps = 34/309 (11%)

Query: 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQ 470
           K+S      +S  + S   S  G  +L+  +D+ + L       + +  +GH   +  + 
Sbjct: 17  KKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDL----SSLLLRGHEDSITSIA 72

Query: 471 FNPQGHYFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWH---INCNYIATGSS 525
           F+P G    S S D T ++W +D        +   H S V  +       N   +A+ S 
Sbjct: 73  FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL 132

Query: 526 DKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMASGDE-DGTIMMWDLASGRCVT 583
           D TV+LWD+S+ G+ +R   GH   + SLA SPDG+ +ASG   DGTI +WDL +G+ ++
Sbjct: 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192

Query: 584 PLMGHTSCVWTLAY------RFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC---E 634
            L GHT  V +LA+            ++  +++ D  +   L  +L+       S    +
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD 252

Query: 635 GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL 694
           GSLLASGS+D T++LWD+ +S+                L+TL   S+ V S+ FS    L
Sbjct: 253 GSLLASGSSDGTIRLWDLRSSSS--------------LLRTLSGHSSSVLSVAFSPDGKL 298

Query: 695 FAAGALSKT 703
            A+G+   T
Sbjct: 299 LASGSSDGT 307

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 95.5 bits (236), Expect = 1e-20
 Identities = 72/243 (29%), Positives = 106/243 (43%), Gaps = 40/243 (16%)

Query: 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVS 389
             + L      S    T     + +   + S DG L+A G SD ++++WD+         
Sbjct: 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE-------- 314

Query: 390 SGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLW 448
                              G+  S    +GH GPV S SFSP G  ++S  S D TIRLW
Sbjct: 315 ------------------TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356

Query: 449 STKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV 508
             +    L   +GH+  V  V F+P G   +S S D T R+W +     LR + GH S V
Sbjct: 357 DLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRV 415

Query: 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568
             + +  +   +A+GSSD T+RLWD+ +      F            SPDG+ +AS   D
Sbjct: 416 TSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF------------SPDGKVLASKSSD 463

Query: 569 GTI 571
            ++
Sbjct: 464 LSV 466

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 21/40 (52%), Positives = 29/40 (72%)

Query: 536 SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
           SGE ++   GH   + S+A SPDG+Y+ASG +DGTI +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
           G+ +R   GH   + S+A SPDG  +ASG +DGT+ +WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
           + LR + GH   V  V +  + N +A+GS D TVR+WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
           + L+ + GH   V  V +  +  Y+A+GS D T++LWD
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 459 YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
            KGH  PV  V F+P G+  AS S D T R+W 
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 48.5 bits (116), Expect = 8e-08
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 459 YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
            KGH  PV  V F+P G Y AS S D T ++W 
Sbjct: 8   LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWS 449
            +GH+GPV S +FSP G+ + S S D T+R+W 
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWS 449
            +GH+GPV S +FSP G ++ S S D TI+LW 
Sbjct: 8   LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 52.3 bits (125), Expect = 6e-07
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 445 IRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW-------SMDRIQ 496
           IRL +      ++  KGH   + D+QFNP      AS S D T R+W       S+  I+
Sbjct: 56  IRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK 115

Query: 497 -PLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDV 534
            P  I+ GH   +  + W+    YI   S  D  V +WD+
Sbjct: 116 DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155

Length = 568

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 45.5 bits (107), Expect = 9e-05
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 29/187 (15%)

Query: 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWST---------KLNANLVC 458
            R +  T  + H   V+S  +S     +L+S S D +++LWS          K  AN+ C
Sbjct: 563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICC 622

Query: 459 YKGHNYPVWDVQF-NPQGHYFASSSHDRTARIWSMDRIQ-PLRIMAGHLSDVDCVRWHIN 516
                     VQF +  G   A  S D     + +   + PL  M GH   V  VR+ ++
Sbjct: 623 ----------VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF-VD 671

Query: 517 CNYIATGSSDKTVRLWDVS---SG---ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
            + + + S+D T++LWD+S   SG     +  F+GH ++   + +S    Y+A+G E   
Sbjct: 672 SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE 731

Query: 571 IMMWDLA 577
           + ++  A
Sbjct: 732 VFVYHKA 738

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 45.3 bits (107), Expect = 9e-05
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 16/158 (10%)

Query: 461 GHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM-------DRIQPLRIMAGHLSDVDCVR 512
           G   P+ DV FNP       ++S D T   W +       +   P+  + GH   V  V 
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 513 WHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571
           +H +  N +A+  +D  V +WDV  G+ V +   H   I SL  + DG  + +  +D  +
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192

Query: 572 MMWDLASGRCVTPLMGHTS-----CVWTLAYRFLLLVT 604
            + D   G  V+ +  H S     C+W  A R  L++T
Sbjct: 193 NIIDPRDGTIVSSVEAHASAKSQRCLW--AKRKDLIIT 228

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 44.7 bits (105), Expect = 2e-04
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 17/167 (10%)

Query: 436 ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDR 494
           + SS+ +  +++W    +  +   K H   VW + ++       AS S D + ++WS+++
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607

Query: 495 ---IQPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGEC-VRIFIGHRSM 549
              I  ++  A    ++ CV++       +A GS+D  V  +D+ + +  +   IGH S 
Sbjct: 608 GVSIGTIKTKA----NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH-SK 662

Query: 550 ILSLAMSPDGRYMASGDEDGTIMMWDL---ASGRCVTPL---MGHTS 590
            +S     D   + S   D T+ +WDL    SG   TPL   MGHT+
Sbjct: 663 TVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN 709

Length = 793

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 43.9 bits (103), Expect = 3e-04
 Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 42/228 (18%)

Query: 453 NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI--------QPLRIMAGH 504
           ++NLVC  G         F+  G +FA++  ++  +I+  + I         P+  +A  
Sbjct: 482 SSNLVCAIG---------FDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR 532

Query: 505 LSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYM 562
            S +  + W+    + +A+ + +  V++WDV+  + V     H   + S+  S  D   +
Sbjct: 533 -SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL 591

Query: 563 ASGDEDGTIMMWDLASGRCVTPL--MGHTSCVW-------TLAYR------FLLLVTNAY 607
           ASG +DG++ +W +  G  +  +    +  CV        +LA+       +   + N  
Sbjct: 592 ASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK 651

Query: 608 LKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655
           L +   +      +S T+ Y      + S L S S D T+KLWD++ S
Sbjct: 652 LPLCTMIG-----HSKTVSY--VRFVDSSTLVSSSTDNTLKLWDLSMS 692

Length = 793

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 15/141 (10%)

Query: 418 QGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLV-------C-YKGHNYPVWD 468
           +GH+  +    F+P    IL+S S D TIR+W    N   V       C  KGH   +  
Sbjct: 71  KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130

Query: 469 VQFNPQGHY-FASSSHDRTARIWSMDRIQPLR--IMAGHLSDVDCVRWHINCNYIATGSS 525
           + +NP  +Y   SS  D    IW ++  +      M   LS    ++W+I  N ++    
Sbjct: 131 IDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSS---LKWNIKGNLLSGTCV 187

Query: 526 DKTVRLWDVSSGECVRIFIGH 546
            K + + D    E    F  H
Sbjct: 188 GKHMHIIDPRKQEIASSFHIH 208

Length = 568

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 52/181 (28%), Positives = 68/181 (37%), Gaps = 47/181 (25%)

Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
            SD  V L D+SS     +  GH   I S+A SPDG  + SG  DGTI +WDL +G  + 
Sbjct: 46  LSDSLVSLPDLSS----LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI 101

Query: 584 PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643
             +                  N+ L                             LAS S 
Sbjct: 102 KSLEGLHDSSVSKLALSSPDGNSIL-----------------------------LASSSL 132

Query: 644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
           D TVKLWD++T  K               ++TL   S  V SL FS    L A+G+    
Sbjct: 133 DGTVKLWDLSTPGK--------------LIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178

Query: 704 S 704
           +
Sbjct: 179 T 179

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	704
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
cd08044	133	TAF5_NTD2 TAF5_NTD2 is the second conserved N-term	100.0
PF04494	142	TFIID_90kDa: WD40 associated region in TFIID subun	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
PTZ00421	493	coronin; Provisional	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.88
KOG1539	910	consensus WD repeat protein [General function pred	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.88
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.88
KOG1274	933	consensus WD40 repeat protein [General function pr	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.87
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.87
KOG2096	420	consensus WD40 repeat protein [General function pr	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG2055	514	consensus WD40 repeat protein [General function pr	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.86
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.85
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG2048	691	consensus WD40 repeat protein [General function pr	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.83
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.83
KOG4227	609	consensus WD40 repeat protein [General function pr	99.82
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG4328	498	consensus WD40 protein [Function unknown]	99.81
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.81
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG0649	325	consensus WD40 repeat protein [General function pr	99.81
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.8
KOG1188	376	consensus WD40 repeat protein [General function pr	99.8
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.79
KOG1963	792	consensus WD40 repeat protein [General function pr	99.78
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.78
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.76
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.75
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.74
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.74
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
PRK01742	429	tolB translocation protein TolB; Provisional	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.72
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.72
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.7
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.7
PRK11028	330	6-phosphogluconolactonase; Provisional	99.7
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.7
KOG0649	325	consensus WD40 repeat protein [General function pr	99.7
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.69
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.68
KOG1310	758	consensus WD40 repeat protein [General function pr	99.67
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.67
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.67
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.67
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
KOG1334	559	consensus WD40 repeat protein [General function pr	99.64
KOG1963	792	consensus WD40 repeat protein [General function pr	99.63
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.63
KOG1188	376	consensus WD40 repeat protein [General function pr	99.63
KOG1310	758	consensus WD40 repeat protein [General function pr	99.62
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.62
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.62
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.61
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.61
KOG2139	445	consensus WD40 repeat protein [General function pr	99.6
KOG2139	445	consensus WD40 repeat protein [General function pr	99.6
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.59
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.59
PRK03629	429	tolB translocation protein TolB; Provisional	99.59
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.58
PRK04922	433	tolB translocation protein TolB; Provisional	99.58
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.58
PRK05137	435	tolB translocation protein TolB; Provisional	99.57
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.56
PRK04922	433	tolB translocation protein TolB; Provisional	99.55
PRK02889	427	tolB translocation protein TolB; Provisional	99.55
PRK02889	427	tolB translocation protein TolB; Provisional	99.55
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.53
KOG2321	703	consensus WD40 repeat protein [General function pr	99.52
KOG4227	609	consensus WD40 repeat protein [General function pr	99.52
PRK05137	435	tolB translocation protein TolB; Provisional	99.52
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.52
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.47
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.47
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.47
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.46
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.42
KOG1334	559	consensus WD40 repeat protein [General function pr	99.41
KOG2321	703	consensus WD40 repeat protein [General function pr	99.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.4
PRK00178	430	tolB translocation protein TolB; Provisional	99.39
PRK00178	430	tolB translocation protein TolB; Provisional	99.38
PRK04792	448	tolB translocation protein TolB; Provisional	99.37
PRK01029	428	tolB translocation protein TolB; Provisional	99.35
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.34
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.34
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.34
PRK04792	448	tolB translocation protein TolB; Provisional	99.34
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.33
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.33
KOG4547	541	consensus WD40 repeat-containing protein [General	99.32
KOG4547	541	consensus WD40 repeat-containing protein [General	99.32
PRK01029	428	tolB translocation protein TolB; Provisional	99.32
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.3
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.29
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.29
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.26
KOG2315	566	consensus Predicted translation initiation factor	99.25
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.25
KOG2314	698	consensus Translation initiation factor 3, subunit	99.24
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.24
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.23
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.22
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.2
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.18
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.16
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.11
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.11
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.1
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.08
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.07
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.07
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.06
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.05
KOG2314	698	consensus Translation initiation factor 3, subunit	99.05
KOG2315	566	consensus Predicted translation initiation factor	99.04
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.03
PRK04043	419	tolB translocation protein TolB; Provisional	99.01
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.0
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.97
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.94
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.93
COG4946	668	Uncharacterized protein related to the periplasmic	98.9
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.9
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.89
COG4946	668	Uncharacterized protein related to the periplasmic	98.88
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.88
PRK04043	419	tolB translocation protein TolB; Provisional	98.88
KOG2695	425	consensus WD40 repeat protein [General function pr	98.88
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.87
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.87
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.85
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.85
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.85
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.82
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.82
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.82
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.8
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.75
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.73
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.72
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.71
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.69
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.66
KOG2695	425	consensus WD40 repeat protein [General function pr	98.64
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.64
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.63
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.6
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.59
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.51
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.51
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.43
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.42
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.42
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.39
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.38
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.38
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.38
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.35
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.35
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.32
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.32
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.26
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.25
KOG1333	241	consensus Uncharacterized conserved protein [Funct	98.24
PRK02888	635	nitrous-oxide reductase; Validated	98.24
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.18
PRK02888	635	nitrous-oxide reductase; Validated	98.16
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.15
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.15
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.14
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.03
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.0
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.0
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.97
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.96
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.92
KOG3621	726	consensus WD40 repeat-containing protein [General	97.9
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.87
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.86
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.82
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.82
KOG3621	726	consensus WD40 repeat-containing protein [General	97.81
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.81
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	97.8
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.78
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.74
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.67
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.65
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.65
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.64
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.61
COG3391	381	Uncharacterized conserved protein [Function unknow	97.58
COG3391	381	Uncharacterized conserved protein [Function unknow	97.57
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.55
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.49
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.43
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.38
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.33
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.3
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.29
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.25
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.24
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.23
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.23
PRK13616	591	lipoprotein LpqB; Provisional	97.21
PRK13616	591	lipoprotein LpqB; Provisional	97.12
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.12
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.11
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.06
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.04
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.04
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.01
PHA02713	557	hypothetical protein; Provisional	96.98
PHA02713	557	hypothetical protein; Provisional	96.96
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.93
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.88
KOG2444	238	consensus WD40 repeat protein [General function pr	96.82
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	96.79
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.78
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.75
PRK10115	686	protease 2; Provisional	96.69
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.63
KOG2395	644	consensus Protein involved in vacuole import and d	96.61
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.61
KOG2395	644	consensus Protein involved in vacuole import and d	96.57
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.57
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.5
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.49
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.46
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.45
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.42
PHA03098	534	kelch-like protein; Provisional	96.41
PRK10115	686	protease 2; Provisional	96.39
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.38
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.35
KOG2444	238	consensus WD40 repeat protein [General function pr	96.34
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.32
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.28
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.13
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.95
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.91
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.89
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.85
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.78
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.67
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.67
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.59
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.57
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.47
PHA03098	534	kelch-like protein; Provisional	95.47
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.29
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.25
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.19
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.11
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.01
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.99
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.96
PHA02790	480	Kelch-like protein; Provisional	94.94
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.8
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.64
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.61
PHA02790	480	Kelch-like protein; Provisional	94.57
KOG0396	389	consensus Uncharacterized conserved protein [Funct	94.56
PRK13684	334	Ycf48-like protein; Provisional	94.51
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.49
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.4
COG5167	776	VID27 Protein involved in vacuole import and degra	94.38
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.33
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.29
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.27
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.09
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.09
PRK13684	334	Ycf48-like protein; Provisional	93.79
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	93.75
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.69
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.48
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.35
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.25
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.07
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.93
PLN02153	341	epithiospecifier protein	92.74
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.53
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.31
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	91.87
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	91.54
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.31
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	91.24
PLN02193	470	nitrile-specifier protein	90.76
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.75
COG5276	370	Uncharacterized conserved protein [Function unknow	90.34
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	90.05
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	89.72
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.24
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.24
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.93
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.79
COG5167	776	VID27 Protein involved in vacuole import and degra	88.65
PLN00033	398	photosystem II stability/assembly factor; Provisio	87.96
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	87.62
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	87.62
KOG2247	615	consensus WD40 repeat-containing protein [General	87.62
COG1520	370	FOG: WD40-like repeat [Function unknown]	87.39
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.19
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.13
KOG2377	657	consensus Uncharacterized conserved protein [Funct	86.98
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	86.94
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	86.15
KOG2247	615	consensus WD40 repeat-containing protein [General	85.55
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	84.19
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.93
PF13449	326	Phytase-like: Esterase-like activity of phytase	83.57
PF12768	281	Rax2: Cortical protein marker for cell polarity	83.41
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	83.29
COG4590	733	ABC-type uncharacterized transport system, permeas	83.11
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	83.05
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	82.9
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	82.75
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	82.56
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	82.52
PF12768	281	Rax2: Cortical protein marker for cell polarity	82.17
COG4590	733	ABC-type uncharacterized transport system, permeas	81.12
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	80.7
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	80.54
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	80.4
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	80.16

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.1e-100  Score=810.26  Aligned_cols=634  Identities=40%  Similarity=0.680  Sum_probs=507.6

Q ss_pred             CchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCC--CCC-----------------CC-C-------Cchhhhcc
Q 005277            1 MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNT--NPI-----------------DI-L-------NDPELSKF   53 (704)
Q Consensus         1 ~~~~~~~~~v~~yl~~~~~~~~~~~~~~e~~~~~~~~~~--~~~-----------------~~-~-------~~~~~~~~   53 (704)
                      +.+++++++|++||+|+||++||++||+|+.+..++...  +..                 ++ .       ...++...
T Consensus        19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   98 (707)
T KOG0263|consen   19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVE   98 (707)
T ss_pred             cchHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhh
Confidence            356899999999999999999999999999876664321  110                 00 0       00111111


Q ss_pred             ccccccccC--ChhhHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHH
Q 005277           54 FRTFSESED--GPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRD  131 (704)
Q Consensus        54 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~  131 (704)
                      ..   ....  -|.+|+..|..||+||+.|||+||+||.+||||+|||+||+|+++++.+.||.||++|+.||..+|+++
T Consensus        99 ~~---~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~  175 (707)
T KOG0263|consen   99 KA---LWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELSPILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSES  175 (707)
T ss_pred             hc---cccccCCChhHhhhhhhcchhhhCcchhhhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHH
Confidence            11   1123  488899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhcCc---chHHHhhcceeEEEEccCC-CCCCCcccc
Q 005277          132 LQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---TKMLGIINERINFQVSPGQ-PSSISDDAE  207 (704)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~i~~~~~~~~~~~~~-~~~~~~~~~  207 (704)
                      |.+|..+..++||++|+.++.||+|||+|+|++.+|++|++||++.+.   .+|+.|||+||.|+++++. ++....+..
T Consensus       176 i~~l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr~s~~lL~~~l~~~~~~~g~~i~~ii~~hldi~v~~~~~~r~~~~~~~  255 (707)
T KOG0263|consen  176 IFQLLSLETIKHIKENETARAFRKNKYVIRLSRDSFDLLLRFLQEDNNIGGTIIIKIINQHLDIDVFDGVMARRTTKPTA  255 (707)
T ss_pred             HHHHHhhhhHHHHhhhhhHHHHhhCcEEEEecHHHHHHHHHHhhhhccccchHHHHHHHHHhCccccccccccccccchh
Confidence            999999999999999999999999999999999999999999999877   8999999999999999872 333332222


Q ss_pred             hh-----hcccCCchhhhccccCceeecCCcchhhhhhhhccccccchhhhcccchhhhccccCCCCCCCCCCchhhhhh
Q 005277          208 IV-----TLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLK  282 (704)
Q Consensus       208 ~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (704)
                      .+     .++|.   +..+.|+.++++|+++.+.+  ++++.....    +.+  +.        +.++....  .++.+
T Consensus       256 ~~g~~~~~i~g~---~~~e~~~~~~~l~~~~~e~~--~~~~~~~~~----e~~--D~--------~~~~~~~~--~~~~~  314 (707)
T KOG0263|consen  256 MVGSEQESIAGE---AKREINKQKVQLGLLLKEEE--IEKKLPILL----EVE--DD--------PNEPDNEK--LKKPK  314 (707)
T ss_pred             hccccccccccc---chhhcccceeeecccccchh--hhhcccccc----cCc--cc--------cccccccc--cccch
Confidence            22     35553   34556788999999998443  444321111    011  00        11111000  11111


Q ss_pred             hHHhhhhcccccccccCcCCCCCCCCCCCCCCCCCh---hHHHHHHHhccCeEeecCCCCCCeEEEEEeeCCCCEEEEEE
Q 005277          283 KDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPT---EVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI  359 (704)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lp~~~~---~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~f  359 (704)
                      +.+....   ....+++    +|. .+.+|+|+...   ..+.+.+++.++++.+....+|++|+||++++..+++|+.|
T Consensus       315 ~~~~~~~---~k~~d~~----~ps-~d~iPlPp~~~~d~~~~~~~l~d~~kr~~l~~~~lpSic~YT~~nt~~~v~ca~f  386 (707)
T KOG0263|consen  315 KKKLLSE---EKKRDPN----APS-RDRIPLPPLKQVDKLAELEALKDEQKRVKLGRNSLPSICMYTFHNTYQGVTCAEF  386 (707)
T ss_pred             hhhhhhh---hhccccC----CCc-cccCCCCcccchhHHHHHHHHHHHHHHhhcCCCCCCcEEEEEEEEcCCcceeEee
Confidence            1111110   1111122    232 67888887665   66778899999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCC---CCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE
Q 005277          360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDT---TPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI  436 (704)
Q Consensus       360 s~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l  436 (704)
                      |+|+++||.|+.|.+|++|.+...+..............   ..................+.||++||+++.|+|+.++|
T Consensus       387 SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfL  466 (707)
T KOG0263|consen  387 SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFL  466 (707)
T ss_pred             cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccce
Confidence            999999999999999999999864322221111100000   00001111223344556699999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCC
Q 005277          437 LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN  516 (704)
Q Consensus       437 ~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~  516 (704)
                      ++||.|++||+|++++..+++.|++|..|||++.|+|.|.||||||.|++.++|..+...+++++.+|.++|.|+.||||
T Consensus       467 lScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPN  546 (707)
T KOG0263|consen  467 LSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPN  546 (707)
T ss_pred             eeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeee
Q 005277          517 CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLA  596 (704)
Q Consensus       517 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~  596 (704)
                      ++|+++||.|.+||+||+.+|..++.|.||.++|++++|||+|++|++|+.||.|.+||+.+++++..+.+|++.|+++.
T Consensus       547 s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls  626 (707)
T KOG0263|consen  547 SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLS  626 (707)
T ss_pred             ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccc---------cccCc
Q 005277          597 YRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE---------EKSGT  667 (704)
Q Consensus       597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~---------~~~~~  667 (704)
                      |                                  |.+|.+||+||.|++|++||+..........         .....
T Consensus       627 F----------------------------------S~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~  672 (707)
T KOG0263|consen  627 F----------------------------------SRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENN  672 (707)
T ss_pred             E----------------------------------ecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCC
Confidence            9                                  9999999999999999999998765441110         01122


Q ss_pred             cccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277          668 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       668 ~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~  700 (704)
                      ....++.++.++.+||.+|.|++++.+|++|..
T Consensus       673 ~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g~~  705 (707)
T KOG0263|consen  673 ASSLLLGSFYTKNTPVVGLHFTRRNLLLAVGPF  705 (707)
T ss_pred             CCcceeeeeeecCceEEEEEEeccceeEEeccc
Confidence            334578899999999999999999999999875

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-46  Score=366.98  Aligned_cols=283  Identities=31%  Similarity=0.583  Sum_probs=256.8

Q ss_pred             eEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277          342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (704)
Q Consensus       342 ~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (704)
                      .|--.+.+|.+.|.|++|+|+|..||+|+.|.++|+||+.+                            ........+|.
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T----------------------------eTp~~t~KgH~  157 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT----------------------------ETPLFTCKGHK  157 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC----------------------------CCcceeecCCc
Confidence            34446789999999999999999999999999999999986                            34556778999


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEeecCCcCeeEEEEcC-----CCCEEEEEeCCCeEEEEECCCC
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNP-----QGHYFASSSHDRTARIWSMDRI  495 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~v~~sp-----~~~~l~sgs~dg~i~lwd~~~~  495 (704)
                      ..|.|++|+|||+.|++|+.||+|++||..+++++ ..+.+|...|++++|.|     ..++|++++.||+++|||+..+
T Consensus       158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~  237 (480)
T KOG0271|consen  158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG  237 (480)
T ss_pred             cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence            99999999999999999999999999999988775 67899999999999987     5679999999999999999999


Q ss_pred             ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE----------------------------------
Q 005277          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR----------------------------------  541 (704)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~----------------------------------  541 (704)
                      ..+..+.+|..+|+|++|--+ .+|++|+.|++|++|+...|.+.+                                  
T Consensus       238 ~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~  316 (480)
T KOG0271|consen  238 TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS  316 (480)
T ss_pred             eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence            999999999999999999654 499999999999999976654322                                  


Q ss_pred             ---------------------------------------------EeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          542 ---------------------------------------------IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       542 ---------------------------------------------~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                                                                   .+.+|..-|..+.||||++++|+++.|..|++||.
T Consensus       317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g  396 (480)
T KOG0271|consen  317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG  396 (480)
T ss_pred             hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence                                                         13567888999999999999999999999999999


Q ss_pred             CCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          577 ASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       577 ~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                      ++|+.+.++++|-..|+.++|                                  +.|.++|++||.|.++++|++.+.+
T Consensus       397 ~tGk~lasfRGHv~~VYqvaw----------------------------------saDsRLlVS~SkDsTLKvw~V~tkK  442 (480)
T KOG0271|consen  397 RTGKFLASFRGHVAAVYQVAW----------------------------------SADSRLLVSGSKDSTLKVWDVRTKK  442 (480)
T ss_pred             CCcchhhhhhhccceeEEEEe----------------------------------ccCccEEEEcCCCceEEEEEeeeee
Confidence            999999999999999999999                                  9999999999999999999999864


Q ss_pred             cccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       657 ~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                                     ....+++|...|+++.|+|||..+|+|+.|+
T Consensus       443 ---------------l~~DLpGh~DEVf~vDwspDG~rV~sggkdk  473 (480)
T KOG0271|consen  443 ---------------LKQDLPGHADEVFAVDWSPDGQRVASGGKDK  473 (480)
T ss_pred             ---------------ecccCCCCCceEEEEEecCCCceeecCCCce
Confidence                           3567899999999999999999999999886

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.7e-45  Score=365.94  Aligned_cols=280  Identities=30%  Similarity=0.504  Sum_probs=265.6

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      -.+-..+|..+.||+|++.||||+.+|.++||+...                            ......+.||++.|.+
T Consensus       171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~----------------------------~~~~~~l~gH~~~v~~  222 (459)
T KOG0272|consen  171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ----------------------------CNLLQTLRGHTSRVGA  222 (459)
T ss_pred             hccCCCcceeeEeecCCCeEEEeecCCceeEeecCC----------------------------cceeEEEeccccceee
Confidence            356677899999999999999999999999999875                            3466889999999999


Q ss_pred             EEEcCC--CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277          427 ASFSPL--GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       427 l~~sp~--~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      +.|+|.  +..++||+.||++++|++.+...+..+.+|...|..++|+|+|++++|++.|.+.++||++++..+....||
T Consensus       223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH  302 (459)
T KOG0272|consen  223 AVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH  302 (459)
T ss_pred             EEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc
Confidence            999997  558999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP  584 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~  584 (704)
                      ...|.+++|+|+|..+++|+.|..-+|||+++|+++..+.+|...|.+++|+|+|..||||+.|++++|||++..+.+.+
T Consensus       303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~  382 (459)
T KOG0272|consen  303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT  382 (459)
T ss_pred             ccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC-CCCEEEEEeCCCcEEEEeCCCCcccccccc
Q 005277          585 LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC-EGSLLASGSADCTVKLWDVTTSTKVLKTEE  663 (704)
Q Consensus       585 ~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~  663 (704)
                      +.+|..-|+.+.|                                  +| .|.+|+|+|.|++++||.-.+.        
T Consensus       383 ipAH~nlVS~Vk~----------------------------------~p~~g~fL~TasyD~t~kiWs~~~~--------  420 (459)
T KOG0272|consen  383 IPAHSNLVSQVKY----------------------------------SPQEGYFLVTASYDNTVKIWSTRTW--------  420 (459)
T ss_pred             cccccchhhheEe----------------------------------cccCCeEEEEcccCcceeeecCCCc--------
Confidence            9999999999999                                  87 7899999999999999998775        


Q ss_pred             ccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          664 KSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       664 ~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                             .++.++.+|.+.|.++..++++.+++++++|+|
T Consensus       421 -------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT  453 (459)
T KOG0272|consen  421 -------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRT  453 (459)
T ss_pred             -------ccchhhcCCccceEEEEeccCCceEEEeccCce
Confidence                   457889999999999999999999999999986

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.1e-41  Score=334.09  Aligned_cols=260  Identities=25%  Similarity=0.456  Sum_probs=243.7

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (704)
                      ...+++|+.+.- ....++.+|...|.++.|+|.  +..||+|+.||+|++|+++.                        
T Consensus       196 sG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~------------------------  250 (459)
T KOG0272|consen  196 SGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ------------------------  250 (459)
T ss_pred             CCceeEeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC------------------------
Confidence            345667765443 445678999999999999997  66999999999999999875                        


Q ss_pred             CCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe
Q 005277          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (704)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~  486 (704)
                          ...+..+.||...|..++|+|+|++|+|+|.|.+-++||+.++..+....||...|.+++|.|+|..++|||.|..
T Consensus       251 ----e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~  326 (459)
T KOG0272|consen  251 ----ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL  326 (459)
T ss_pred             ----CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccch
Confidence                2455678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec-CCCEEEEE
Q 005277          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASG  565 (704)
Q Consensus       487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp-dg~~l~sg  565 (704)
                      -+|||+++++++..+.+|..+|.+|+|+|+|..||||+.|++++|||++..+++.++.+|.+-|+.++|+| .|.+|+++
T Consensus       327 ~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta  406 (459)
T KOG0272|consen  327 GRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA  406 (459)
T ss_pred             hheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 78999999


Q ss_pred             eCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277          566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC  645 (704)
Q Consensus       566 ~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg  645 (704)
                      +.|++++||...++.+++++.||.+.|.+++.                                  ++++.+++|++.|.
T Consensus       407 syD~t~kiWs~~~~~~~ksLaGHe~kV~s~Di----------------------------------s~d~~~i~t~s~DR  452 (459)
T KOG0272|consen  407 SYDNTVKIWSTRTWSPLKSLAGHEGKVISLDI----------------------------------SPDSQAIATSSFDR  452 (459)
T ss_pred             ccCcceeeecCCCcccchhhcCCccceEEEEe----------------------------------ccCCceEEEeccCc
Confidence            99999999999999999999999999999999                                  99999999999999


Q ss_pred             cEEEEe
Q 005277          646 TVKLWD  651 (704)
Q Consensus       646 ~V~iWd  651 (704)
                      ++++|.
T Consensus       453 T~KLW~  458 (459)
T KOG0272|consen  453 TIKLWR  458 (459)
T ss_pred             eeeecc
Confidence            999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3e-39  Score=307.69  Aligned_cols=281  Identities=25%  Similarity=0.394  Sum_probs=254.5

Q ss_pred             EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      .++.+|.+.|.|+.|++|+++|++++.||.+.|||.-+.                            .....+.-.+..|
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt----------------------------nK~haipl~s~WV  100 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT----------------------------NKVHAIPLPSSWV  100 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc----------------------------cceeEEecCceeE
Confidence            568999999999999999999999999999999997651                            1222233356789


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWSTKLN------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~------~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~  498 (704)
                      ..++|+|.++++++|+.|+...||++.+.      .....+.+|++.+.++.|-+ ...++|++.|.++.+||+++++.+
T Consensus       101 MtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~  179 (343)
T KOG0286|consen  101 MTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQT  179 (343)
T ss_pred             EEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEE
Confidence            99999999999999999999999999865      33456889999999999997 456899999999999999999999


Q ss_pred             EEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277          499 RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       499 ~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~  577 (704)
                      ..|.+|.++|.++.++| +++.+++|+.|+..++||+|.+.+++.|.+|...|++++|.|+|.-+++|++|+++++||++
T Consensus       180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR  259 (343)
T KOG0286|consen  180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR  259 (343)
T ss_pred             EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence            99999999999999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeeeecCC--CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          578 SGRCVTPLMGH--TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       578 ~~~~~~~~~~h--~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                      ..+.+..+...  ..+|++++|                                  |..|++|++|..|.++.+||.-.+
T Consensus       260 aD~~~a~ys~~~~~~gitSv~F----------------------------------S~SGRlLfagy~d~~c~vWDtlk~  305 (343)
T KOG0286|consen  260 ADQELAVYSHDSIICGITSVAF----------------------------------SKSGRLLFAGYDDFTCNVWDTLKG  305 (343)
T ss_pred             CCcEEeeeccCcccCCceeEEE----------------------------------cccccEEEeeecCCceeEeecccc
Confidence            99988888643  368899999                                  999999999999999999999887


Q ss_pred             ccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          656 TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       656 ~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      +.               +..+.+|...|.+|..+|||..+++|++|.+
T Consensus       306 e~---------------vg~L~GHeNRvScl~~s~DG~av~TgSWDs~  338 (343)
T KOG0286|consen  306 ER---------------VGVLAGHENRVSCLGVSPDGMAVATGSWDST  338 (343)
T ss_pred             ce---------------EEEeeccCCeeEEEEECCCCcEEEecchhHh
Confidence            54               5677799999999999999999999999864

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.2e-40  Score=322.54  Aligned_cols=277  Identities=30%  Similarity=0.494  Sum_probs=236.9

Q ss_pred             ccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 005277          411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW  490 (704)
Q Consensus       411 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lw  490 (704)
                      .++...+.||.++|.|+.|+|++..|++|+.|.++|+||+.+..+..+.++|...|.|++|+|||+.+|+|+.||+|++|
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCcee-EEeccCCCCeeEEEEcC-----CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277          491 SMDRIQPL-RIMAGHLSDVDCVRWHI-----NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       491 d~~~~~~~-~~~~~~~~~V~~v~~~p-----~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s  564 (704)
                      |..+++++ +.+.+|...|++++|.|     .+.+||+++.||+|+|||+..+.++..+.+|..+|+|+.|--+| +|++
T Consensus       185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liyS  263 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYS  263 (480)
T ss_pred             cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEe
Confidence            99887765 67899999999999986     67899999999999999999999999999999999999997544 8999


Q ss_pred             EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehc-c---------------------------------------
Q 005277          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLV-T---------------------------------------  604 (704)
Q Consensus       565 g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~-~---------------------------------------  604 (704)
                      |+.|++|++|+...|.+...+++|...|..++.+.-... .                                       
T Consensus       264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs  343 (480)
T KOG0271|consen  264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS  343 (480)
T ss_pred             cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence            999999999999999999999999999998887411110 0                                       


Q ss_pred             -cccccccccccccee----eeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCC
Q 005277          605 -NAYLKISDKVSTGFL----FYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK  679 (704)
Q Consensus       605 -~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~  679 (704)
                       +..+.+|+.......    ......++...+|||++++|++|-|.+|++|+-.+++               .+.++++|
T Consensus       344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk---------------~lasfRGH  408 (480)
T KOG0271|consen  344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK---------------FLASFRGH  408 (480)
T ss_pred             CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc---------------hhhhhhhc
Confidence             011112221111100    1111134455679999999999999999999999985               47899999


Q ss_pred             CcCeEEEEEccCCcEEEEeecCCC
Q 005277          680 STPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       680 ~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      -.+|+.++|+.|.++|++|+.|.|
T Consensus       409 v~~VYqvawsaDsRLlVS~SkDsT  432 (480)
T KOG0271|consen  409 VAAVYQVAWSADSRLLVSGSKDST  432 (480)
T ss_pred             cceeEEEEeccCccEEEEcCCCce
Confidence            999999999999999999999976

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-37  Score=291.80  Aligned_cols=294  Identities=26%  Similarity=0.407  Sum_probs=250.8

Q ss_pred             EEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          345 YTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      -++.+|.+.|+.++..+. ...+.+++.|..+.+|++...                       ....+...+.+.||+..
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------------d~~~G~~~r~~~GHsH~   65 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------------DIKYGVPVRRLTGHSHF   65 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------------ccccCceeeeeeccceE
Confidence            367899999999999887 678999999999999999762                       11224567889999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~  503 (704)
                      |..+..++++++.++++.|+++++||+.+++..+.|.+|...|.+++|+|+++.+++|+.|+++.+|++-..........
T Consensus        66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~  145 (315)
T KOG0279|consen   66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED  145 (315)
T ss_pred             ecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999977544444333


Q ss_pred             -CCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          504 -HLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       504 -~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                       +...|.|++|+|+  ..+|++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+.||.+.+||++.++
T Consensus       146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k  225 (315)
T KOG0279|consen  146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK  225 (315)
T ss_pred             CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence             2788999999998  7899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277          581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK  660 (704)
Q Consensus       581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~  660 (704)
                      .+..+. |...|.++.|                                  +|+.-.|+.+.. ..|+|||+.++..+..
T Consensus       226 ~lysl~-a~~~v~sl~f----------------------------------spnrywL~~at~-~sIkIwdl~~~~~v~~  269 (315)
T KOG0279|consen  226 NLYSLE-AFDIVNSLCF----------------------------------SPNRYWLCAATA-TSIKIWDLESKAVVEE  269 (315)
T ss_pred             eeEecc-CCCeEeeEEe----------------------------------cCCceeEeeccC-CceEEEeccchhhhhh
Confidence            977664 7889999999                                  998877766654 4699999999887655


Q ss_pred             cccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          661 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       661 ~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ........      ......-...+++|++||..|.+|-.|+.
T Consensus       270 l~~d~~g~------s~~~~~~~clslaws~dG~tLf~g~td~~  306 (315)
T KOG0279|consen  270 LKLDGIGP------SSKAGDPICLSLAWSADGQTLFAGYTDNV  306 (315)
T ss_pred             cccccccc------ccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence            43321100      12222223467899999999999988863

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=7e-39  Score=317.38  Aligned_cols=278  Identities=26%  Similarity=0.498  Sum_probs=251.0

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      ...+|..+.|.|+|+.|++|+..|.+.+|+...                            ......++.|..+|.++.|
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~----------------------------fnFEtilQaHDs~Vr~m~w  146 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS----------------------------FNFETILQAHDSPVRTMKW  146 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCce----------------------------eeHHHHhhhhcccceeEEE
Confidence            345799999999999999999999999999653                            2334567899999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC-CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCe
Q 005277          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV  508 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V  508 (704)
                      ++++.+++||+.+|.|++|+.. ...+..+..| ...|++++|+|+...|++|+.||+|+|||....+..+.+.+|.-.|
T Consensus       147 s~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdV  225 (464)
T KOG0284|consen  147 SHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDV  225 (464)
T ss_pred             ccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCc
Confidence            9999999999999999999988 4445555554 5899999999999999999999999999999999999999999999


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC
Q 005277          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH  588 (704)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h  588 (704)
                      .|+.|||....|++|+.|..|++||.++|.|+.++.+|+..|..+.|+|++++|++++.|..++++|+++.+.+.++++|
T Consensus       226 ksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H  305 (464)
T KOG0284|consen  226 KSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH  305 (464)
T ss_pred             ceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCc
Q 005277          589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT  667 (704)
Q Consensus       589 ~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~  667 (704)
                      ...|+++.|                                  +| ...+|.+|+.||.|..|.+.....+         
T Consensus       306 kkdv~~~~W----------------------------------hP~~~~lftsgg~Dgsvvh~~v~~~~p~---------  342 (464)
T KOG0284|consen  306 KKDVTSLTW----------------------------------HPLNESLFTSGGSDGSVVHWVVGLEEPL---------  342 (464)
T ss_pred             hhhheeecc----------------------------------ccccccceeeccCCCceEEEeccccccc---------
Confidence            999999999                                  55 3568999999999999999844332         


Q ss_pred             cccccccccCCCCcCeEEEEEccCCcEEEEeecCCCC
Q 005277          668 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS  704 (704)
Q Consensus       668 ~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt~  704 (704)
                           ...-+.|.+.|.+++|+|=|.+||+|+.|.|+
T Consensus       343 -----~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~  374 (464)
T KOG0284|consen  343 -----GEIPPAHDGEIWSLAYHPLGHILATGSNDRTV  374 (464)
T ss_pred             -----cCCCcccccceeeeeccccceeEeecCCCcce
Confidence                 22345789999999999999999999999874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.5e-37  Score=310.38  Aligned_cols=274  Identities=27%  Similarity=0.502  Sum_probs=251.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      ....|+|++|+.+|++||+|+.||.++||+...                             .....+..|++||.++.|
T Consensus       234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-----------------------------~l~~tl~~HkgPI~slKW  284 (524)
T KOG0273|consen  234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-----------------------------NLISTLGQHKGPIFSLKW  284 (524)
T ss_pred             ccCCcceEEecCCCCeEEEeecCcEEEEEecCc-----------------------------hhhhhhhccCCceEEEEE
Confidence            346799999999999999999999999999764                             455667889999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCee
Q 005277          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD  509 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~  509 (704)
                      +..|.||++++.|+++.+||..++...+.+.-|..+-.+|.|- +..-|++++.|+.|+++.+....|+.++.+|.+.|.
T Consensus       285 nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~  363 (524)
T KOG0273|consen  285 NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN  363 (524)
T ss_pred             cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeeecccCceE
Confidence            9999999999999999999999999999999999987889997 445699999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC---------CEEEEEeCCCeEEEEeCCCCe
Q 005277          510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---------RYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg---------~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      ++.|+|.+.+|++++.|++++||......+...+.+|...|..+.|+|.|         ..+++++.|++|++||+..+.
T Consensus       364 alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv  443 (524)
T KOG0273|consen  364 ALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV  443 (524)
T ss_pred             EEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc
Confidence            99999999999999999999999999999999999999999999999965         478999999999999999999


Q ss_pred             eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277          581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK  660 (704)
Q Consensus       581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~  660 (704)
                      ++..+..|+.+|++++|                                  +|+|+++|+|+.||.|+||++.+++..  
T Consensus       444 ~i~~f~kH~~pVysvaf----------------------------------S~~g~ylAsGs~dg~V~iws~~~~~l~--  487 (524)
T KOG0273|consen  444 PIHTLMKHQEPVYSVAF----------------------------------SPNGRYLASGSLDGCVHIWSTKTGKLV--  487 (524)
T ss_pred             eeEeeccCCCceEEEEe----------------------------------cCCCcEEEecCCCCeeEeccccchhee--
Confidence            99999999999999999                                  999999999999999999999987543  


Q ss_pred             cccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          661 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       661 ~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                   ..+ ...+.|..|+|+.+|..|+++..|+.
T Consensus       488 -------------~s~-~~~~~Ifel~Wn~~G~kl~~~~sd~~  516 (524)
T KOG0273|consen  488 -------------KSY-QGTGGIFELCWNAAGDKLGACASDGS  516 (524)
T ss_pred             -------------Eee-cCCCeEEEEEEcCCCCEEEEEecCCC
Confidence                         233 34556999999999999998888774

>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

Probab=100.00  E-value=1.2e-38  Score=286.99  Aligned_cols=132  Identities=44%  Similarity=0.815  Sum_probs=129.3

Q ss_pred             hhhHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChhh
Q 005277           64 PARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSH  143 (704)
Q Consensus        64 ~~~~~~~~~~l~~~~~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~  143 (704)
                      |..|+++|.+||+||+++||+||+||.++||||||||||+||++|+.++|++||++|+++|+..|+++|++|++|++|+|
T Consensus         1 ~~~y~~~y~~l~~wv~~~ld~~k~EL~~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~   80 (133)
T cd08044           1 PNDYEQAYSKLRKWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEH   80 (133)
T ss_pred             ChHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHhhcCceEEEEchhhHHHHHHHHhhcCcchHHHhhcceeEEEEc
Q 005277          144 LEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVS  195 (704)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~  195 (704)
                      +++|++++.||+|||+|+||++++++|++||++.++.++++|||+|+.+++.
T Consensus        81 l~~n~~~~~~r~~Ky~i~ms~~s~~lL~~~L~~~~~~~~~~il~~~i~~~~~  132 (133)
T cd08044          81 LKENELAKLFRSNKYVIRMSRDAYSLLLRFLESWGGSLLLKILNEHIDIDVR  132 (133)
T ss_pred             HhhhHHHHHHHhCCEEEEECHHHHHHHHHHHHHCCcHHHHHHHHhccccccc
Confidence            9999999999999999999999999999999999999999999999888764

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various

>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID

Probab=100.00  E-value=2.8e-38  Score=287.66  Aligned_cols=133  Identities=44%  Similarity=0.821  Sum_probs=123.8

Q ss_pred             cccCChhhHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcC
Q 005277           59 ESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGV  138 (704)
Q Consensus        59 ~~~~~~~~~~~~~~~l~~~~~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~  138 (704)
                      ..+.||+.|+++|.+|++||++|||+||+||.++||||||||||+||++|+.++|++||+||+++|...|.++|++|+.|
T Consensus         7 ~~~~~p~~y~~~y~~l~~wv~~sld~yK~EL~~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i   86 (142)
T PF04494_consen    7 IEENDPDKYEQAYSRLRNWVDNSLDIYKPELSRLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSI   86 (142)
T ss_dssp             SS---GCCHHHHHHHHHHHHHTS-HHHHHHHGGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT-
T ss_pred             cccCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhcCcc---hHHHhhcceeE
Q 005277          139 LSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST---KMLGIINERIN  191 (704)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~i~~~~~~  191 (704)
                      ++|+|+++|++++.||++||+|+||+.++.+|+.||++++..   +|++|||+||+
T Consensus        87 ~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~~fL~~~~~~g~~~ll~iin~~i~  142 (142)
T PF04494_consen   87 TSPEHLEENELARLFRSNKYVIRLSRDSFSLLLQFLQENENSGGSVLLRIINQHIQ  142 (142)
T ss_dssp             -SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHHHHHHHTTCHTHHHHHHHHHHHEE
T ss_pred             CcHHHHhccHHHHHHHhCCeeEEECHHHHHHHHHHHHhCCcchHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999998   99999999985

The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.1e-35  Score=283.30  Aligned_cols=264  Identities=27%  Similarity=0.430  Sum_probs=233.8

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      .++-+|+...... ...+.-...-|..++|+|.|+++|+|+-|....||++.....                      ++
T Consensus        77 GklIvWDs~TtnK-~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~----------------------~g  133 (343)
T KOG0286|consen   77 GKLIVWDSFTTNK-VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA----------------------EG  133 (343)
T ss_pred             CeEEEEEcccccc-eeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc----------------------cc
Confidence            3566666533221 112222345689999999999999999999999999975211                      12


Q ss_pred             CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEE
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTAR  488 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~  488 (704)
                      ..+..+.+.+|++-+.|+.|.+|+ .|+++|.|.++.+||+++++.+..|.+|.+.|.+++++| +++.|++|+.|++.+
T Consensus       134 ~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak  212 (343)
T KOG0286|consen  134 NVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK  212 (343)
T ss_pred             cceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence            235667799999999999999854 589999999999999999999999999999999999999 999999999999999


Q ss_pred             EEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC--CCCEEEEEEecCCCEEEEEe
Q 005277          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~i~~l~~spdg~~l~sg~  566 (704)
                      +||++.+..++.|.+|.++|++|+|+|+|.-+++|+.|+++|+||+|..+.+..|...  ..+|++++||..|++|++|.
T Consensus       213 lWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy  292 (343)
T KOG0286|consen  213 LWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY  292 (343)
T ss_pred             eeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee
Confidence            9999999999999999999999999999999999999999999999999999888632  35899999999999999999


Q ss_pred             CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT  646 (704)
Q Consensus       567 ~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~  646 (704)
                      .|..+.+||.-.++.+..+.+|.+.|.++..                                  +|||..++|||.|.+
T Consensus       293 ~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~----------------------------------s~DG~av~TgSWDs~  338 (343)
T KOG0286|consen  293 DDFTCNVWDTLKGERVGVLAGHENRVSCLGV----------------------------------SPDGMAVATGSWDST  338 (343)
T ss_pred             cCCceeEeeccccceEEEeeccCCeeEEEEE----------------------------------CCCCcEEEecchhHh
Confidence            9999999999999999999999999999998                                  999999999999999


Q ss_pred             EEEEe
Q 005277          647 VKLWD  651 (704)
Q Consensus       647 V~iWd  651 (704)
                      ++||.
T Consensus       339 lriW~  343 (343)
T KOG0286|consen  339 LRIWA  343 (343)
T ss_pred             eeecC
Confidence            99994

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7.8e-36  Score=285.50  Aligned_cols=281  Identities=25%  Similarity=0.445  Sum_probs=250.1

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      .+.+|.+.|+++.|+|+|.+||+|+.|..|.+|++...                           ....-.+.+|++.|.
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd---------------------------ceN~~~lkgHsgAVM   94 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD---------------------------CENFWVLKGHSGAVM   94 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc---------------------------ccceeeeccccceeE
Confidence            45789999999999999999999999999999997641                           234456779999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      .+.|.+|+..|++++.|.+|+.||+++++++..+++|...|..+.-+.-| .++.+|+.||++++||+++..+++.+. .
T Consensus        95 ~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~  173 (338)
T KOG0265|consen   95 ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-N  173 (338)
T ss_pred             eeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-c
Confidence            99999999999999999999999999999999999999999999855544 457788999999999999988888775 4


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC----e
Q 005277          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG----R  580 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~----~  580 (704)
                      ...++++.|...+..+.+|+-|+.|++||++.+....++.||..+|+.+..+|+|.++.+-+.|.++++||++..    +
T Consensus       174 kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R  253 (338)
T KOG0265|consen  174 KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR  253 (338)
T ss_pred             ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999853    4


Q ss_pred             eeeeecCCC----ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          581 CVTPLMGHT----SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       581 ~~~~~~~h~----~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                      ++..+.+|.    ...-..+|                                  +|+++.+.+|+.|..|++||.... 
T Consensus       254 ~v~if~g~~hnfeknlL~csw----------------------------------sp~~~~i~ags~dr~vyvwd~~~r-  298 (338)
T KOG0265|consen  254 CVKIFQGHIHNFEKNLLKCSW----------------------------------SPNGTKITAGSADRFVYVWDTTSR-  298 (338)
T ss_pred             eEEEeecchhhhhhhcceeec----------------------------------cCCCCccccccccceEEEeecccc-
Confidence            577777654    23334455                                  999999999999999999998764 


Q ss_pred             cccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       657 ~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                    ..+..+++|.+.|.+++|+|...+|.+++.|++
T Consensus       299 --------------~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~  331 (338)
T KOG0265|consen  299 --------------RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKT  331 (338)
T ss_pred             --------------cEEEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence                          357889999999999999999999999999976

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.7e-36  Score=292.55  Aligned_cols=281  Identities=27%  Similarity=0.480  Sum_probs=263.2

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      .+.+|...|+.+-|+|+-.++++++.|++|++||..+                            +.....++||...|.
T Consensus       103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~t----------------------------g~~e~~LrGHt~sv~  154 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTET----------------------------GELERSLRGHTDSVF  154 (406)
T ss_pred             hhhccccceeeeeeccCceEEEEecCCceEEEEEccc----------------------------hhhhhhhhcccccee
Confidence            3568999999999999999999999999999999876                            334677899999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      +++|+..|++|++++.|-.+++||..+ .+++....+|...|.++.|-|.|.++++++.|.+|+.|+++++.++..+.+|
T Consensus       155 di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h  234 (406)
T KOG0295|consen  155 DISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH  234 (406)
T ss_pred             EEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc
Confidence            999999999999999999999999987 5778888999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC---------------CCEEEEEeCCC
Q 005277          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD---------------GRYMASGDEDG  569 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd---------------g~~l~sg~~dg  569 (704)
                      ...|..++.+.||.++++++.|.+|++|-+.++++...+..|..+|-|++|.|.               |.++.+++.|+
T Consensus       235 ~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk  314 (406)
T KOG0295|consen  235 SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK  314 (406)
T ss_pred             hHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence            999999999999999999999999999999999999999999999999999872               25899999999


Q ss_pred             eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                      +|++||+.+|.++.++.+|...|..++|                                  +|.|++|+++..|+++++
T Consensus       315 tIk~wdv~tg~cL~tL~ghdnwVr~~af----------------------------------~p~Gkyi~ScaDDktlrv  360 (406)
T KOG0295|consen  315 TIKIWDVSTGMCLFTLVGHDNWVRGVAF----------------------------------SPGGKYILSCADDKTLRV  360 (406)
T ss_pred             eEEEEeccCCeEEEEEecccceeeeeEE----------------------------------cCCCeEEEEEecCCcEEE
Confidence            9999999999999999999999999999                                  999999999999999999


Q ss_pred             EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ||+.+.+               ++.+++.|..-|+++.|+.+..++++|+.|.+
T Consensus       361 wdl~~~~---------------cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt  399 (406)
T KOG0295|consen  361 WDLKNLQ---------------CMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQT  399 (406)
T ss_pred             EEeccce---------------eeeccCCCcceeEEEecCCCCceEEeccccce
Confidence            9999874               46777889999999999999999999998865

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.3e-35  Score=287.63  Aligned_cols=288  Identities=22%  Similarity=0.437  Sum_probs=258.6

Q ss_pred             EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      ..+.+|.+-|.|+++.|...++++|+.|++|+|||+.+                            +.....+.||...|
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat----------------------------g~LkltltGhi~~v  196 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT----------------------------GQLKLTLTGHIETV  196 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc----------------------------CeEEEeecchhhee
Confidence            34678999999999999999999999999999999987                            34556788999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      ..+++|+-..||++++.|+.|+.||++..+.++.|.+|-+.|.+++.+|.-..+++|+.|.++++||+++...+..+.||
T Consensus       197 r~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH  276 (460)
T KOG0285|consen  197 RGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH  276 (460)
T ss_pred             eeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP  584 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~  584 (704)
                      ..+|..+.+.|-...+++||.|++|++||++.|+...++..|+..+.+++.+|....+++++.|. |+-|++..|..+..
T Consensus       277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n  355 (460)
T KOG0285|consen  277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN  355 (460)
T ss_pred             CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc
Confidence            99999999999888999999999999999999999999999999999999999999999999884 99999999999999


Q ss_pred             ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccc
Q 005277          585 LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK  664 (704)
Q Consensus       585 ~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~  664 (704)
                      +.+|...|.+++.                                  ..| .++++|+..|.+.+||..++.........
T Consensus       356 lsgh~~iintl~~----------------------------------nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~  400 (460)
T KOG0285|consen  356 LSGHNAIINTLSV----------------------------------NSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTI  400 (460)
T ss_pred             cccccceeeeeee----------------------------------ccC-ceEEEcCCceEEEEEecCcCccccccccc
Confidence            9999999999986                                  444 48999999999999999998654332111


Q ss_pred             cCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          665 SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       665 ~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ..      ...+ .....|++.+|...|..|++|..|+|
T Consensus       401 vq------pGSl-~sEagI~as~fDktg~rlit~eadKt  432 (460)
T KOG0285|consen  401 VQ------PGSL-ESEAGIFASCFDKTGSRLITGEADKT  432 (460)
T ss_pred             cc------CCcc-ccccceeEEeecccCceEEeccCCcc
Confidence            10      1111 13457999999999999999998875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.1e-34  Score=292.68  Aligned_cols=281  Identities=36%  Similarity=0.664  Sum_probs=255.2

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      ++.+|.+.|+|++|+|++++|++|+.||.|++|++...                            .....+.+|...+.
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~----------------------------~~~~~~~~~~~~i~   55 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG----------------------------ELLRTLKGHTGPVR   55 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC----------------------------CcEEEEecCCccee
Confidence            35688999999999999999999999999999998752                            23455667889999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~  505 (704)
                      .+.|+|+++++++++.||.|++|++..++.+..+..|...|.++.|+|++.++++++.+|.+.+||+++.+....+..|.
T Consensus        56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  135 (289)
T cd00200          56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT  135 (289)
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC
Confidence            99999999999999999999999999888888899999999999999999999998889999999999888888888899


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                      ..+.+++|+|++.++++++.++.|++||+++++.+..+..|...+.+++|+|+++.+++++.||.|++||+++++.+..+
T Consensus       136 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~  215 (289)
T cd00200         136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL  215 (289)
T ss_pred             CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch
Confidence            99999999999999999988999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccccc
Q 005277          586 MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS  665 (704)
Q Consensus       586 ~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~  665 (704)
                      ..|...+.++.|                                  ++++.++++++.||.|++|++.++..        
T Consensus       216 ~~~~~~i~~~~~----------------------------------~~~~~~~~~~~~~~~i~i~~~~~~~~--------  253 (289)
T cd00200         216 RGHENGVNSVAF----------------------------------SPDGYLLASGSEDGTIRVWDLRTGEC--------  253 (289)
T ss_pred             hhcCCceEEEEE----------------------------------cCCCcEEEEEcCCCcEEEEEcCCcee--------
Confidence            889999999999                                  88888999998899999999987543        


Q ss_pred             CccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          666 GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       666 ~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                             +..+..+..+|.++.|++++.+|++++.||+
T Consensus       254 -------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  284 (289)
T cd00200         254 -------VQTLSGHTNSVTSLAWSPDGKRLASGSADGT  284 (289)
T ss_pred             -------EEEccccCCcEEEEEECCCCCEEEEecCCCe
Confidence                   3445577789999999999999999999874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8e-35  Score=293.40  Aligned_cols=298  Identities=25%  Similarity=0.418  Sum_probs=252.4

Q ss_pred             EEeeCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC----C
Q 005277          346 TFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG----H  420 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h  420 (704)
                      ...+|...|.+++|+|-.. ++|+|+.|...++|++..........                  ...+....+.+    .
T Consensus       173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q------------------~~lrh~~~~~~~s~~~  234 (524)
T KOG0273|consen  173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ------------------LVLRHCIREGGKSVPS  234 (524)
T ss_pred             eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh------------------hhhhhhhhhhcccCCc
Confidence            4556999999999999765 99999999999999987411000000                  00001111111    3


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~  500 (704)
                      +..|++++|+.+|..|++|+.||.+++|+.. +..+.++..|.+||.++.|+..|.|+++++.||++.+||.-++...+.
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~  313 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ  313 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence            4679999999999999999999999999987 778888999999999999999999999999999999999999999999


Q ss_pred             eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      +.-|..+-..|.|-. ...+++.+.|+.|+++-+....++.++.+|.+.|.++.|.|.|.+|++++.|++++||......
T Consensus       314 f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~  392 (524)
T KOG0273|consen  314 FEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN  392 (524)
T ss_pred             eeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence            998988877888854 4678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277          581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK  660 (704)
Q Consensus       581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~  660 (704)
                      ....+.+|...|+.+.|.+.-.....                         ...+..+++++.|++|++||+..+.+   
T Consensus       393 ~~~~l~~Hskei~t~~wsp~g~v~~n-------------------------~~~~~~l~sas~dstV~lwdv~~gv~---  444 (524)
T KOG0273|consen  393 SVHDLQAHSKEIYTIKWSPTGPVTSN-------------------------PNMNLMLASASFDSTVKLWDVESGVP---  444 (524)
T ss_pred             chhhhhhhccceeeEeecCCCCccCC-------------------------CcCCceEEEeecCCeEEEEEccCCce---
Confidence            99999999999999999332111110                         33567899999999999999998754   


Q ss_pred             cccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          661 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       661 ~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                  +.++..|..||++|+|+|+|.+||+|+.||.
T Consensus       445 ------------i~~f~kH~~pVysvafS~~g~ylAsGs~dg~  475 (524)
T KOG0273|consen  445 ------------IHTLMKHQEPVYSVAFSPNGRYLASGSLDGC  475 (524)
T ss_pred             ------------eEeeccCCCceEEEEecCCCcEEEecCCCCe
Confidence                        6678899999999999999999999999984

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.7e-34  Score=315.71  Aligned_cols=284  Identities=30%  Similarity=0.564  Sum_probs=250.3

Q ss_pred             EEeeC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          346 TFINT-HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       346 ~~~~~-~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      ++..+ ...|.|+.|+++|+.+++++.++.+++|++.....                          .....+.+|...|
T Consensus       153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------------~~~~~l~~h~~~v  206 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------------NLLRELSGHTRGV  206 (456)
T ss_pred             eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------------hhhccccccccce
Confidence            34444 67899999999999999999999999999854210                          1334457899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWST-KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~-~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~  503 (704)
                      ++++|+|+++++++++.|++|++||+ ..+.++.++++|...|++++|+|+|+.+++|+.|++|++||++++++++.+.+
T Consensus       207 ~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~  286 (456)
T KOG0266|consen  207 SDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG  286 (456)
T ss_pred             eeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec
Confidence            99999999999999999999999999 55688999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc--EEEEeecCCCC--EEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSM--ILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~--i~~l~~spdg~~l~sg~~dg~I~iwdl~~~  579 (704)
                      |.+.|.+++|++++++|++++.|+.|++||+.++.  ++..+.++...  +++++|+|+|.++++++.|+.+++||+..+
T Consensus       287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence            99999999999999999999999999999999999  66777777665  999999999999999999999999999999


Q ss_pred             eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 005277          580 RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL  659 (704)
Q Consensus       580 ~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~  659 (704)
                      ..+..+.+|...+.++.-                               .+.++.+.++++|+.|+.|++|++.++..  
T Consensus       367 ~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~i~sg~~d~~v~~~~~~s~~~--  413 (456)
T KOG0266|consen  367 KSVGTYTGHSNLVRCIFS-------------------------------PTLSTGGKLIYSGSEDGSVYVWDSSSGGI--  413 (456)
T ss_pred             cceeeecccCCcceeEec-------------------------------ccccCCCCeEEEEeCCceEEEEeCCccch--
Confidence            999999999875433211                               11178899999999999999999998543  


Q ss_pred             ccccccCccccccccccCCC-CcCeEEEEEccCCcEEEEeecC
Q 005277          660 KTEEKSGTNRLRSLKTLPTK-STPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       660 ~~~~~~~~~~~~~l~~~~~~-~~~V~~l~fs~~g~~La~gs~d  701 (704)
                                   +..+..| ...|..+.|++...++++++.+
T Consensus       414 -------------~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~  443 (456)
T KOG0266|consen  414 -------------LQRLEGHSKAAVSDLSSHPTENLIASSSFE  443 (456)
T ss_pred             -------------hhhhcCCCCCceeccccCCCcCeeeecCcC
Confidence                         4566677 8889999999999999999853

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5e-34  Score=266.17  Aligned_cols=284  Identities=20%  Similarity=0.392  Sum_probs=243.4

Q ss_pred             hccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277          327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (704)
Q Consensus       327 ~~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (704)
                      .+...+++|.+. ..+|..++....+.|+.+.+.||++.||+|+ ...||+||+++..                      
T Consensus        17 ~YDhTIRfWqa~-tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~n----------------------   72 (311)
T KOG0315|consen   17 GYDHTIRFWQAL-TGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNN----------------------   72 (311)
T ss_pred             cCcceeeeeehh-cCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCC----------------------
Confidence            345678888754 4567777776677899999999999999986 6679999998622                      


Q ss_pred             CCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe
Q 005277          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (704)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~  486 (704)
                          ...+..+.+|+..|.++.|..+|+++++||+||+++|||++...+.+.|+ |..+|+++..+|+...|++|..+|.
T Consensus        73 ----p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~  147 (311)
T KOG0315|consen   73 ----PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGN  147 (311)
T ss_pred             ----CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCc
Confidence                23567788999999999999999999999999999999999876666665 7799999999999999999999999


Q ss_pred             EEEEECCCCceeEEec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC------cEEEEeecCCCCEEEEEEecCC
Q 005277          487 ARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG------ECVRIFIGHRSMILSLAMSPDG  559 (704)
Q Consensus       487 i~lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~------~~~~~~~~h~~~i~~l~~spdg  559 (704)
                      |++||+........+. .....|.++..+|+|.+++.+...|.+++|++-++      .++..++.|.+.+..+.+|||+
T Consensus       148 irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~  227 (311)
T KOG0315|consen  148 IRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV  227 (311)
T ss_pred             EEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC
Confidence            9999998876555443 34568999999999999999999999999999764      3566788999999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEE
Q 005277          560 RYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL  638 (704)
Q Consensus       560 ~~l~sg~~dg~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  638 (704)
                      ++|++++.|.+++||+..+. +....+.+|...++...|                                  |.||.+|
T Consensus       228 k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~F----------------------------------S~dg~Yl  273 (311)
T KOG0315|consen  228 KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAF----------------------------------SADGEYL  273 (311)
T ss_pred             cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeee----------------------------------ccCccEE
Confidence            99999999999999999887 666788999999999999                                  9999999


Q ss_pred             EEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEE
Q 005277          639 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF  688 (704)
Q Consensus       639 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~f  688 (704)
                      +||+.|+.+++|++..++.               +..+.+|..+..|++.
T Consensus       274 vTassd~~~rlW~~~~~k~---------------v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  274 VTASSDHTARLWDLSAGKE---------------VRQYQGHHKAAVCVAL  308 (311)
T ss_pred             EecCCCCceeecccccCce---------------eeecCCcccccEEEEe
Confidence            9999999999999999865               4456666666555543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4.8e-36  Score=291.01  Aligned_cols=271  Identities=28%  Similarity=0.568  Sum_probs=236.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      ...+|.|+.+.  ...+++|..|.+|+|||.+.                            ......+.||+|.|.|+.|
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~----------------------------~~c~~~L~GHtGSVLCLqy  245 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS----------------------------LECLKILTGHTGSVLCLQY  245 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEecccc----------------------------HHHHHhhhcCCCcEEeeec
Confidence            45689999994  45799999999999999875                            3466778999999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce---eEEeccCCC
Q 005277          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---LRIMAGHLS  506 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~---~~~~~~~~~  506 (704)
                      .  .+.+++||.|.+|++||+++++++.++-+|...|..+.|+  +.++++++.|.++.+||+.....   .+.+.||..
T Consensus       246 d--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA  321 (499)
T KOG0281|consen  246 D--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA  321 (499)
T ss_pred             c--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh
Confidence            7  6789999999999999999999999999999999999996  66999999999999999987653   356679999


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (704)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~  586 (704)
                      .|+.+.|+  .+|+++++.|.+|++|++.++.+++++.+|...|-|+.+  .|+++++|+.|.+|++||+..|.+++.+.
T Consensus       322 aVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe  397 (499)
T KOG0281|consen  322 AVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE  397 (499)
T ss_pred             heeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh
Confidence            99999985  459999999999999999999999999999999999998  59999999999999999999999999999


Q ss_pred             CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccC
Q 005277          587 GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG  666 (704)
Q Consensus       587 ~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~  666 (704)
                      ||..-|.++.|                                    +...+++|+.||+|+|||+..+....      .
T Consensus       398 GHEeLvRciRF------------------------------------d~krIVSGaYDGkikvWdl~aaldpr------a  435 (499)
T KOG0281|consen  398 GHEELVRCIRF------------------------------------DNKRIVSGAYDGKIKVWDLQAALDPR------A  435 (499)
T ss_pred             chHHhhhheee------------------------------------cCceeeeccccceEEEEecccccCCc------c
Confidence            99999999988                                    67899999999999999998875431      1


Q ss_pred             ccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          667 TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       667 ~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      ....-++.++..|.+.|..++|..  ..+++++.|.
T Consensus       436 ~~~~~Cl~~lv~hsgRVFrLQFD~--fqIvsssHdd  469 (499)
T KOG0281|consen  436 PASTLCLRTLVEHSGRVFRLQFDE--FQIISSSHDD  469 (499)
T ss_pred             cccchHHHhhhhccceeEEEeecc--eEEEeccCCC
Confidence            122245677888999999999943  3455555554

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-34  Score=270.45  Aligned_cols=247  Identities=26%  Similarity=0.439  Sum_probs=218.1

Q ss_pred             EEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (704)
Q Consensus       343 ~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (704)
                      ....+.+|...|..++.++||++.++|+.|+.+++||+.+                            ....+.+.||..
T Consensus        55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~----------------------------g~~t~~f~GH~~  106 (315)
T KOG0279|consen   55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT----------------------------GESTRRFVGHTK  106 (315)
T ss_pred             eeeeeeccceEecceEEccCCceEEeccccceEEEEEecC----------------------------CcEEEEEEecCC
Confidence            3456788999999999999999999999999999999986                            356788999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC--CcCeeEEEEcCC--CCEEEEEeCCCeEEEEECCCCcee
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQPL  498 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~v~~sp~--~~~l~sgs~dg~i~lwd~~~~~~~  498 (704)
                      .|.+++|++|++.+++||.|.+|++|++- +.+..++..+  ...|.|+.|+|+  ..++++++.|+++++||+++.+..
T Consensus       107 dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~  185 (315)
T KOG0279|consen  107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR  185 (315)
T ss_pred             ceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh
Confidence            99999999999999999999999999998 4455555433  788999999997  789999999999999999999999


Q ss_pred             EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                      ..+.+|.+.++.++++|||...++|+.||.+.+||++.++.+..+ +|...|.+++|+|+..+|+.+... .|+|||+.+
T Consensus       186 ~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~  263 (315)
T KOG0279|consen  186 TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLES  263 (315)
T ss_pred             hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeeccCC-ceEEEeccc
Confidence            999999999999999999999999999999999999999998776 688999999999998887776554 599999999


Q ss_pred             CeeeeeecCC---------CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          579 GRCVTPLMGH---------TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       579 ~~~~~~~~~h---------~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                      +.++..+...         .....+++|                                  +++|..|++|..|+.|++
T Consensus       264 ~~~v~~l~~d~~g~s~~~~~~~clslaw----------------------------------s~dG~tLf~g~td~~irv  309 (315)
T KOG0279|consen  264 KAVVEELKLDGIGPSSKAGDPICLSLAW----------------------------------SADGQTLFAGYTDNVIRV  309 (315)
T ss_pred             hhhhhhccccccccccccCCcEEEEEEE----------------------------------cCCCcEEEeeecCCcEEE
Confidence            9888776421         223455666                                  999999999999999999


Q ss_pred             EeCCC
Q 005277          650 WDVTT  654 (704)
Q Consensus       650 Wd~~~  654 (704)
                      |.+..
T Consensus       310 ~qv~~  314 (315)
T KOG0279|consen  310 WQVAK  314 (315)
T ss_pred             EEeec
Confidence            98753

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.9e-35  Score=311.80  Aligned_cols=235  Identities=33%  Similarity=0.582  Sum_probs=221.2

Q ss_pred             CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-------------------------------eeEEeecCCcCeeE
Q 005277          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-------------------------------NLVCYKGHNYPVWD  468 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-------------------------------~~~~~~~h~~~V~~  468 (704)
                      ....++|..|++|+..||.|..|..|++|.+...+                               ....+.+|.+||..
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg  456 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG  456 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence            34679999999999999999999999999987311                               12446789999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC
Q 005277          469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS  548 (704)
Q Consensus       469 v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~  548 (704)
                      +.|+|+.++|++|+.|+++|+|++++...+..+.||..+|+++.|+|.|-|+|+++.|++.++|......+.+.|.+|.+
T Consensus       457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghls  536 (707)
T KOG0263|consen  457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS  536 (707)
T ss_pred             eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF  628 (704)
Q Consensus       549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (704)
                      .|.|+.|+|+..|+++|+.|.+|++||+.+|..++.+.||.++|.+++|                               
T Consensus       537 DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~-------------------------------  585 (707)
T KOG0263|consen  537 DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF-------------------------------  585 (707)
T ss_pred             ccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE-------------------------------
Confidence            9999999999999999999999999999999999999999999999999                               


Q ss_pred             cccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          629 GCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       629 ~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                         ||+|++|++|+.||.|.+||+.++.               .+..+.+|.+.|++|.||++|.+||+|+.|++
T Consensus       586 ---Sp~Gr~LaSg~ed~~I~iWDl~~~~---------------~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns  642 (707)
T KOG0263|consen  586 ---SPCGRYLASGDEDGLIKIWDLANGS---------------LVKQLKGHTGTIYSLSFSRDGNVLASGGADNS  642 (707)
T ss_pred             ---cCCCceEeecccCCcEEEEEcCCCc---------------chhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence               9999999999999999999999875               36778889999999999999999999999975

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.5e-34  Score=262.88  Aligned_cols=283  Identities=24%  Similarity=0.387  Sum_probs=250.1

Q ss_pred             CCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc
Q 005277          339 LPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ  418 (704)
Q Consensus       339 ~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (704)
                      +|.....++..+.+.|..+.|+-||++.++++.|.+|++|+...                            ...++.+.
T Consensus         5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r----------------------------g~liktYs   56 (307)
T KOG0316|consen    5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR----------------------------GALIKTYS   56 (307)
T ss_pred             CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccc----------------------------cceeeeec
Confidence            45555566778999999999999999999999999999999654                            45778899


Q ss_pred             CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC--Cc
Q 005277          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR--IQ  496 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~--~~  496 (704)
                      +|...|..++.+.|+..+++|+.|..|.+||+.+|+.+..+++|.+.|..+.|+.+...+++|+.|.++++||.+.  .+
T Consensus        57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e  136 (307)
T KOG0316|consen   57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE  136 (307)
T ss_pred             CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999975  57


Q ss_pred             eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                      |++++......|.++..  .+..|++|+.||++|.||++.|.....+.+  .+|+|++|++||++..+++.|+++++.|-
T Consensus       137 PiQildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk  212 (307)
T KOG0316|consen  137 PIQILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDK  212 (307)
T ss_pred             ccchhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeeccc
Confidence            89999888889999886  467899999999999999999988776655  58999999999999999999999999999


Q ss_pred             CCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          577 ASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       577 ~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                      .+|+.+..+.+|...-+.+..                                |++.....+++|++||.|.+||+....
T Consensus       213 ~tGklL~sYkGhkn~eykldc--------------------------------~l~qsdthV~sgSEDG~Vy~wdLvd~~  260 (307)
T KOG0316|consen  213 ETGKLLKSYKGHKNMEYKLDC--------------------------------CLNQSDTHVFSGSEDGKVYFWDLVDET  260 (307)
T ss_pred             chhHHHHHhcccccceeeeee--------------------------------eecccceeEEeccCCceEEEEEeccce
Confidence            999999999999876666554                                336677899999999999999998865


Q ss_pred             cccccccccCccccccccccCCCCcC-eEEEEEccCCcEEEEeec
Q 005277          657 KVLKTEEKSGTNRLRSLKTLPTKSTP-VYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       657 ~~~~~~~~~~~~~~~~l~~~~~~~~~-V~~l~fs~~g~~La~gs~  700 (704)
                      .               +..++.+..+ |.++.++|.-..|.+++.
T Consensus       261 ~---------------~sk~~~~~~v~v~dl~~hp~~~~f~~A~~  290 (307)
T KOG0316|consen  261 Q---------------ISKLSVVSTVIVTDLSCHPTMDDFITATG  290 (307)
T ss_pred             e---------------eeeeccCCceeEEeeecccCccceeEecC
Confidence            4               5566677777 899999998766655543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.6e-33  Score=262.42  Aligned_cols=287  Identities=23%  Similarity=0.413  Sum_probs=240.3

Q ss_pred             EEEEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccce-eeccCC
Q 005277          343 SFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY-TLYQGH  420 (704)
Q Consensus       343 ~~~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h  420 (704)
                      ...++.+|.+.+..++|+|- |.+||+|+.|..|+||+......                         .... ..-.+|
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-------------------------~~ck~vld~~h   60 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-------------------------WTCKTVLDDGH   60 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-------------------------EEEEEeccccc
Confidence            34567788999999999998 99999999999999999874110                         1111 223479


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC---C
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKL--NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR---I  495 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~--~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~---~  495 (704)
                      +..|.+++|+|.|++|++||.|.++.||.-..  .+++..+.||...|.+++|+++|++||+|+.|+.|-||.++.   .
T Consensus        61 krsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf  140 (312)
T KOG0645|consen   61 KRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF  140 (312)
T ss_pred             hheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE
Confidence            99999999999999999999999999998764  467889999999999999999999999999999999999974   3


Q ss_pred             ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC---CCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (704)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~---~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~  572 (704)
                      .+...+.+|..+|..+.|||...+|++++.|.+|++|+-.   .-.++.++.+|.+.|-+++|+|.|..|++++.|++++
T Consensus       141 ec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~  220 (312)
T KOG0645|consen  141 ECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVS  220 (312)
T ss_pred             EEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceE
Confidence            5678889999999999999999999999999999999876   3368899999999999999999999999999999999


Q ss_pred             EEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277          573 MWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV  652 (704)
Q Consensus       573 iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~  652 (704)
                      ||-..+.-    -..|...++.+.|                                  .  ...|++|+.|+.|+++.-
T Consensus       221 Iw~~~~~~----~~~~sr~~Y~v~W----------------------------------~--~~~IaS~ggD~~i~lf~~  260 (312)
T KOG0645|consen  221 IWRLYTDL----SGMHSRALYDVPW----------------------------------D--NGVIASGGGDDAIRLFKE  260 (312)
T ss_pred             eeeeccCc----chhcccceEeeee----------------------------------c--ccceEeccCCCEEEEEEe
Confidence            99865321    1237789999999                                  4  558999999999999987


Q ss_pred             CCCccccccccccCcccccccc-ccCCCCcCeEEEEEccC-CcEEEEeecCCC
Q 005277          653 TTSTKVLKTEEKSGTNRLRSLK-TLPTKSTPVYSLQFSRR-NLLFAAGALSKT  703 (704)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~V~~l~fs~~-g~~La~gs~dgt  703 (704)
                      ......         ..+..+. .-..|...|++|+|+|. ..+|++|+.||+
T Consensus       261 s~~~d~---------p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~  304 (312)
T KOG0645|consen  261 SDSPDE---------PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI  304 (312)
T ss_pred             cCCCCC---------chHHHHHhhhcccccccceEEEcCCCCCceeecCCCce
Confidence            643111         1122222 44568889999999994 678999999985

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.3e-33  Score=295.48  Aligned_cols=301  Identities=26%  Similarity=0.448  Sum_probs=254.4

Q ss_pred             CCCeEEEEEe-eCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceee
Q 005277          339 LPSVSFYTFI-NTHNGLNCASISQDGSLVAGGFSD-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL  416 (704)
Q Consensus       339 ~p~~~~~~~~-~~~~~V~~~~fs~dg~~lasg~~d-g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (704)
                      +|...+...+ -....|..++|+..|.+||.|+.. |.+-||++..                            ...+-.
T Consensus       294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs----------------------------EsYVlK  345 (893)
T KOG0291|consen  294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS----------------------------ESYVLK  345 (893)
T ss_pred             cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec----------------------------cceeee
Confidence            4555444333 345789999999999999999875 8999999976                            234456


Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~  496 (704)
                      .+||...+.+++++|||+++++|+.||.|+|||..++-|..+|..|+..|+.++|+..|+.++++|-||+|+.||+.+.+
T Consensus       346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr  425 (893)
T KOG0291|consen  346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR  425 (893)
T ss_pred             ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeccC-CCCeeEEEEcCCCCEEEEEECCC-cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277          497 PLRIMAGH-LSDVDCVRWHINCNYIATGSSDK-TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (704)
Q Consensus       497 ~~~~~~~~-~~~V~~v~~~p~~~~l~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw  574 (704)
                      ..+++... .....|++..|.|..+++|+.|. .|.+|++++|+.+-.+.||.++|.+++|+|+|..|++|+.|.+|++|
T Consensus       426 NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW  505 (893)
T KOG0291|consen  426 NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW  505 (893)
T ss_pred             eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence            88888743 34578999999999999998875 59999999999999999999999999999999999999999999999


Q ss_pred             eCCCCe-eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277          575 DLASGR-CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVT  653 (704)
Q Consensus       575 dl~~~~-~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~  653 (704)
                      |+-... .+.++ .+...+..++|                                  +|+|..|++++.||.|.+||+.
T Consensus       506 ~if~s~~~vEtl-~i~sdvl~vsf----------------------------------rPdG~elaVaTldgqItf~d~~  550 (893)
T KOG0291|consen  506 DIFSSSGTVETL-EIRSDVLAVSF----------------------------------RPDGKELAVATLDGQITFFDIK  550 (893)
T ss_pred             EeeccCceeeeE-eeccceeEEEE----------------------------------cCCCCeEEEEEecceEEEEEhh
Confidence            986543 33333 36677888888                                  9999999999999999999999


Q ss_pred             CCcccccccccc----Cc-cccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          654 TSTKVLKTEEKS----GT-NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       654 ~~~~~~~~~~~~----~~-~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      .+..+..+..+.    +. ........-.....+.+.+++|+||.++.+|+..+
T Consensus       551 ~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn  604 (893)
T KOG0291|consen  551 EAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESN  604 (893)
T ss_pred             hceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcc
Confidence            887775554421    11 11112233344567899999999999999998765

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.9e-33  Score=261.09  Aligned_cols=263  Identities=22%  Similarity=0.368  Sum_probs=231.7

Q ss_pred             CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCC
Q 005277          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD  442 (704)
Q Consensus       363 g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D  442 (704)
                      .-+||+++.|.+||+|...+                            +.+.+.++...+.|+.+...|+++.|++++. 
T Consensus        10 ~viLvsA~YDhTIRfWqa~t----------------------------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-   60 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALT----------------------------GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-   60 (311)
T ss_pred             ceEEEeccCcceeeeeehhc----------------------------CeEEEEEecCccceeeEEEcCCcchhhhccC-
Confidence            35899999999999999876                            4566666666788999999999999998886 


Q ss_pred             CeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEE
Q 005277          443 TTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI  520 (704)
Q Consensus       443 g~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l  520 (704)
                      -.||+||++++.  ++.+|.+|+..|+.+.|..+|+++++||.||+++|||++.....+.+. |.++|+++..||+...|
T Consensus        61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteL  139 (311)
T KOG0315|consen   61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTEL  139 (311)
T ss_pred             CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceE
Confidence            479999999875  588999999999999999999999999999999999999977777776 77999999999999999


Q ss_pred             EEEECCCcEEEEeCCCCcEEEEeec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC------eeeeeecCCCceee
Q 005277          521 ATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG------RCVTPLMGHTSCVW  593 (704)
Q Consensus       521 ~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~------~~~~~~~~h~~~V~  593 (704)
                      ++|..+|.|++||+....+.+.+.. ....|.++...|||.+|+.+...|..++|++-+.      .++..++.|.+.+.
T Consensus       140 is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il  219 (311)
T KOG0315|consen  140 ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL  219 (311)
T ss_pred             EeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE
Confidence            9999999999999998877666543 3468999999999999999999999999998764      45667788999998


Q ss_pred             eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccc
Q 005277          594 TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSL  673 (704)
Q Consensus       594 sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l  673 (704)
                      .+.+                                  ||++++||++|.|.+++||+.++--              ..-
T Consensus       220 ~C~l----------------------------------SPd~k~lat~ssdktv~iwn~~~~~--------------kle  251 (311)
T KOG0315|consen  220 RCLL----------------------------------SPDVKYLATCSSDKTVKIWNTDDFF--------------KLE  251 (311)
T ss_pred             EEEE----------------------------------CCCCcEEEeecCCceEEEEecCCce--------------eeE
Confidence            8888                                  9999999999999999999998751              223


Q ss_pred             cccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          674 KTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       674 ~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ..+.+|...|...+||.||.+|++|+.|++
T Consensus       252 ~~l~gh~rWvWdc~FS~dg~YlvTassd~~  281 (311)
T KOG0315|consen  252 LVLTGHQRWVWDCAFSADGEYLVTASSDHT  281 (311)
T ss_pred             EEeecCCceEEeeeeccCccEEEecCCCCc
Confidence            456788899999999999999999999964

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-33  Score=280.78  Aligned_cols=294  Identities=23%  Similarity=0.381  Sum_probs=250.9

Q ss_pred             CCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCcccee
Q 005277          336 SAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT  415 (704)
Q Consensus       336 ~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (704)
                      ...+|+....++..|.+.|.-+.||++|++||+|+.|.+..||.+...                         ...+...
T Consensus       209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-------------------------~~~kl~~  263 (519)
T KOG0293|consen  209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD-------------------------VHFKLKK  263 (519)
T ss_pred             cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-------------------------cceeeee
Confidence            345677777788999999999999999999999999999999998641                         2245678


Q ss_pred             eccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (704)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~  494 (704)
                      ++.||..+|.-+.||||.++|++|+.|..+++||+.++.....|. +|...+.+++|.|||..|++|+.|+++..||++.
T Consensus       264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg  343 (519)
T KOG0293|consen  264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG  343 (519)
T ss_pred             eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence            899999999999999999999999999999999999999988876 3467899999999999999999999999999986


Q ss_pred             CceeEEecc-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 005277          495 IQPLRIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM  573 (704)
Q Consensus       495 ~~~~~~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~i  573 (704)
                      .. .....+ ....|.+++..+||+++++.+.|..|++++..+....... ....+|++++.|.||+++.+.-.+..|++
T Consensus       344 n~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~L  421 (519)
T KOG0293|consen  344 NI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHL  421 (519)
T ss_pred             ch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEE
Confidence            43 333333 2356899999999999999999999999999876665544 34568999999999999999999999999


Q ss_pred             EeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeeccc-CCCCCEEEEEeCCCcEEEEeC
Q 005277          574 WDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA-SCEGSLLASGSADCTVKLWDV  652 (704)
Q Consensus       574 wdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~g~~lasgs~Dg~V~iWd~  652 (704)
                      ||+...+.+..+.||...-+-+.-                                |+ ..+..++++||+|+.|+||+.
T Consensus       422 WDl~e~~lv~kY~Ghkq~~fiIrS--------------------------------CFgg~~~~fiaSGSED~kvyIWhr  469 (519)
T KOG0293|consen  422 WDLEENKLVRKYFGHKQGHFIIRS--------------------------------CFGGGNDKFIASGSEDSKVYIWHR  469 (519)
T ss_pred             eecchhhHHHHhhcccccceEEEe--------------------------------ccCCCCcceEEecCCCceEEEEEc
Confidence            999999999999999854333322                                11 445689999999999999999


Q ss_pred             CCCccccccccccCccccccccccCCCCcCeEEEEEccCC-cEEEEeecCCC
Q 005277          653 TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGALSKT  703 (704)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g-~~La~gs~dgt  703 (704)
                      .++.               ++..+.+|...|.+|+|+|.+ .+||+|+.|||
T Consensus       470 ~sgk---------------ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt  506 (519)
T KOG0293|consen  470 ISGK---------------LLAVLSGHSKTVNCVSWNPADPEMFASASDDGT  506 (519)
T ss_pred             cCCc---------------eeEeecCCcceeeEEecCCCCHHHhhccCCCCe
Confidence            8875               478899999999999999976 57899999987

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.2e-34  Score=287.35  Aligned_cols=246  Identities=25%  Similarity=0.490  Sum_probs=226.4

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc-cCeE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVY  425 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~  425 (704)
                      ...|...|+++.||++|.++++|..+|.|++|+.+-                             ..+....+|. ..|.
T Consensus       134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-----------------------------nnVk~~~ahh~eaIR  184 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-----------------------------NNVKIIQAHHAEAIR  184 (464)
T ss_pred             hhhhcccceeEEEccCCCEEEEcCCCceEEecccch-----------------------------hhhHHhhHhhhhhhh
Confidence            357889999999999999999999999999998653                             3344445554 9999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~  505 (704)
                      +++|+|+...+++||.||+|+|||....+.-..+.+|...|.+++|+|....+++||.|..|++||.++++++.++.+|.
T Consensus       185 dlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HK  264 (464)
T KOG0284|consen  185 DLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHK  264 (464)
T ss_pred             eeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhcc
Confidence            99999999999999999999999999998888899999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP  584 (704)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~~~~~~  584 (704)
                      ..|..+.|+|++++|+++|.|..++++|+++.+.++.+.+|...++++.|+| ...+|.+|+.||.|..|.+...+++..
T Consensus       265 ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~  344 (464)
T KOG0284|consen  265 NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE  344 (464)
T ss_pred             ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccC
Confidence            9999999999999999999999999999999999999999999999999999 567888999999999999986666666


Q ss_pred             e-cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          585 L-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       585 ~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                      + .+|...|++++|                                  +|-|.+|++|+.|.++++|.-...
T Consensus       345 i~~AHd~~iwsl~~----------------------------------hPlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  345 IPPAHDGEIWSLAY----------------------------------HPLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             CCcccccceeeeec----------------------------------cccceeEeecCCCcceeeeccCCC
Confidence            6 579999999999                                  999999999999999999986543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4.3e-32  Score=319.86  Aligned_cols=298  Identities=17%  Similarity=0.305  Sum_probs=241.9

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      +.+|.+.|++++|+|+|++||+|+.||.|+||++........                    ........+. +...|.+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~--------------------~~~~~~~~~~-~~~~v~~  537 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR--------------------DIHYPVVELA-SRSKLSG  537 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc--------------------ccccceEEec-ccCceee
Confidence            356888999999999999999999999999999754110000                    0001112222 3468999


Q ss_pred             EEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277          427 ASFSPL-GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       427 l~~sp~-~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      ++|+|. +.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||++++..+..+..+
T Consensus       538 l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~  617 (793)
T PLN00181        538 ICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK  617 (793)
T ss_pred             EEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC
Confidence            999874 67899999999999999999999999999999999999997 7899999999999999999998888887754


Q ss_pred             CCCeeEEEEc-CCCCEEEEEECCCcEEEEeCCCCc-EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC----
Q 005277          505 LSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----  578 (704)
Q Consensus       505 ~~~V~~v~~~-p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~----  578 (704)
                       ..|.++.|+ +++.+|++|+.||.|++||+++++ .+..+.+|...|.++.|. ++.+|++++.|+.|++||++.    
T Consensus       618 -~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~  695 (793)
T PLN00181        618 -ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG  695 (793)
T ss_pred             -CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence             689999995 579999999999999999998765 567788999999999997 788999999999999999974    


Q ss_pred             --CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          579 --GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       579 --~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                        +.++..+.+|...+..+.|                                  ++++.+|++|+.||.|++|+.....
T Consensus       696 ~~~~~l~~~~gh~~~i~~v~~----------------------------------s~~~~~lasgs~D~~v~iw~~~~~~  741 (793)
T PLN00181        696 INETPLHSFMGHTNVKNFVGL----------------------------------SVSDGYIATGSETNEVFVYHKAFPM  741 (793)
T ss_pred             cCCcceEEEcCCCCCeeEEEE----------------------------------cCCCCEEEEEeCCCEEEEEECCCCC
Confidence              3567888999999999988                                  9999999999999999999987654


Q ss_pred             cccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       657 ~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      .......... .... -.....+...|.+++|+|++..|++|+.+|+
T Consensus       742 ~~~s~~~~~~-~~~~-~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~  786 (793)
T PLN00181        742 PVLSYKFKTI-DPVS-GLEVDDASQFISSVCWRGQSSTLVAANSTGN  786 (793)
T ss_pred             ceEEEecccC-Cccc-ccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence            3322111000 0000 0112345667999999999999999999985

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-33  Score=275.93  Aligned_cols=246  Identities=33%  Similarity=0.578  Sum_probs=232.4

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      .+.+|.++|..++|+..|++||+++.|-.+++||..+.                           ..+++.+.+|...|.
T Consensus       145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~---------------------------~~c~ks~~gh~h~vS  197 (406)
T KOG0295|consen  145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF---------------------------FRCIKSLIGHEHGVS  197 (406)
T ss_pred             hhhccccceeEEEEecCccEEEecCCccchhheeHHHH---------------------------HHHHHHhcCccccee
Confidence            56789999999999999999999999999999998751                           346677889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~  505 (704)
                      ++.|-|.|.+++|++.|.+|+.|++.++-++.++.+|...|..++.+.||..+++|+.|.++++|-+.+.++...+..|.
T Consensus       198 ~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hE  277 (406)
T KOG0295|consen  198 SVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHE  277 (406)
T ss_pred             eEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEcCC---------------CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCe
Q 005277          506 SDVDCVRWHIN---------------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (704)
Q Consensus       506 ~~V~~v~~~p~---------------~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~  570 (704)
                      -+|.|++|.|.               +.++++++.|++|++||+.+|.++.++.+|...|..++|+|.|+||+++.+|++
T Consensus       278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt  357 (406)
T KOG0295|consen  278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT  357 (406)
T ss_pred             cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc
Confidence            99999999762               258999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEE
Q 005277          571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLW  650 (704)
Q Consensus       571 I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iW  650 (704)
                      +++||+++++++..+..|..-|++++|                                  +.+..+++||+-|.++++|
T Consensus       358 lrvwdl~~~~cmk~~~ah~hfvt~lDf----------------------------------h~~~p~VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  358 LRVWDLKNLQCMKTLEAHEHFVTSLDF----------------------------------HKTAPYVVTGSVDQTVKVW  403 (406)
T ss_pred             EEEEEeccceeeeccCCCcceeEEEec----------------------------------CCCCceEEeccccceeeee
Confidence            999999999999999999999999999                                  7777799999999999999


Q ss_pred             eC
Q 005277          651 DV  652 (704)
Q Consensus       651 d~  652 (704)
                      ..
T Consensus       404 Ec  405 (406)
T KOG0295|consen  404 EC  405 (406)
T ss_pred             ec
Confidence            74

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=8.8e-32  Score=274.69  Aligned_cols=344  Identities=24%  Similarity=0.332  Sum_probs=253.9

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCcccccc--ccCCC---CCCCCcc-cc--cCCC---------
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSS--GLQGE---NDTTPRE-DI--IGPN---------  408 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~--~~~~~---~~~~~~~-~~--~~~~---------  408 (704)
                      .+.+|...++-..|||.|.++|+|...|.||||+...........  ...+.   ....... ++  .+..         
T Consensus        54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~  133 (603)
T KOG0318|consen   54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL  133 (603)
T ss_pred             eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence            356788889999999999999999999999999987533221111  11111   0111000 00  0000         


Q ss_pred             -CCccceeeccCCccCeEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe
Q 005277          409 -GRKRSYTLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (704)
Q Consensus       409 -~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~  486 (704)
                       ......-.+.||+..|+++.|-|...+ +++|+.|++|.+|+-...+...+++.|..-|.|+.|+|||..|++++.||.
T Consensus       134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk  213 (603)
T KOG0318|consen  134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK  213 (603)
T ss_pred             ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence             012234457799999999999998874 889999999999998877888888999999999999999999999999999


Q ss_pred             EEEEECCCCceeEEec---cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE---------------------
Q 005277          487 ARIWSMDRIQPLRIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI---------------------  542 (704)
Q Consensus       487 i~lwd~~~~~~~~~~~---~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~---------------------  542 (704)
                      +.+||-.+++.+..+.   +|.+.|.+++|+||+..+++++.|.+++|||+.+++++++                     
T Consensus       214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l  293 (603)
T KOG0318|consen  214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL  293 (603)
T ss_pred             EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence            9999999999999988   8999999999999999999999999999999987765543                     


Q ss_pred             ----------------------eecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee-cCCCceeeeeeeee
Q 005277          543 ----------------------FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL-MGHTSCVWTLAYRF  599 (704)
Q Consensus       543 ----------------------~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~-~~h~~~V~sl~~~~  599 (704)
                                            +.||...|+++..+|++.+|++|+.||.|.-||..+|..-+.. .+|...|.++...-
T Consensus       294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~  373 (603)
T KOG0318|consen  294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE  373 (603)
T ss_pred             EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence                                  4689999999999999999999999999999999887554332 44555555444311


Q ss_pred             ----eehccccccccc----------------------cccccc-ee-------------------eeeeeEEeecccCC
Q 005277          600 ----LLLVTNAYLKIS----------------------DKVSTG-FL-------------------FYSLTIIYFGCASC  633 (704)
Q Consensus       600 ----~~~~~~~~~~~~----------------------~~~~~~-~~-------------------~~~~~~~~~~~~s~  633 (704)
                          +.+.-++.++..                      .....+ ..                   ...........++|
T Consensus       374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~  453 (603)
T KOG0318|consen  374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP  453 (603)
T ss_pred             CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence                000001111100                      000000 00                   00000222345599


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          634 EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       634 ~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      +++.++.|+.||.|+||.+......             .......|..+|++++||||+.+||+|...+
T Consensus       454 ~~~~vaVGG~Dgkvhvysl~g~~l~-------------ee~~~~~h~a~iT~vaySpd~~yla~~Da~r  509 (603)
T KOG0318|consen  454 DGSEVAVGGQDGKVHVYSLSGDELK-------------EEAKLLEHRAAITDVAYSPDGAYLAAGDASR  509 (603)
T ss_pred             CCCEEEEecccceEEEEEecCCccc-------------ceeeeecccCCceEEEECCCCcEEEEeccCC
Confidence            9999999999999999999876532             1234456889999999999999999997654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.3e-33  Score=285.92  Aligned_cols=288  Identities=22%  Similarity=0.378  Sum_probs=252.5

Q ss_pred             CCCCeEEEEEeeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceee
Q 005277          338 ALPSVSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL  416 (704)
Q Consensus       338 ~~p~~~~~~~~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (704)
                      -+|....+++.+|..+|+++.|.| .+.+|++|+.|+.|+||++-.                           ...+++.
T Consensus       201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---------------------------~~~~lrt  253 (503)
T KOG0282|consen  201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---------------------------DRRCLRT  253 (503)
T ss_pred             eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---------------------------Ccceehh
Confidence            356667788999999999999999 799999999999999999864                           2567889


Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCC
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRI  495 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~  495 (704)
                      +.||+.+|.+++|+++|..++|+|.|+.|++||+++|+++..+.. ...+.|+.|.|++ +.|++|+.|+.|+.||++++
T Consensus       254 f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~  332 (503)
T KOG0282|consen  254 FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG  332 (503)
T ss_pred             hhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence            999999999999999999999999999999999999999999873 5678999999988 89999999999999999999


Q ss_pred             ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (704)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg~~l~sg~~dg~I~iw  574 (704)
                      +.++.+..|.+.|..+.|-++|.++++.+.|+++++|+.+.+..+.... .+.....|+..+|++.++++-+.|+.|.++
T Consensus       333 kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~if  412 (503)
T KOG0282|consen  333 KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIF  412 (503)
T ss_pred             HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEE
Confidence            9999999999999999999999999999999999999999887665443 233456789999999999999999999999


Q ss_pred             eCCCC---eeeeeecCCCceee--eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          575 DLASG---RCVTPLMGHTSCVW--TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       575 dl~~~---~~~~~~~~h~~~V~--sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                      .+...   ..-..+.+|...-+  .+.|                                  ||||.+|++|+.||.+.+
T Consensus       413 s~~~~~r~nkkK~feGh~vaGys~~v~f----------------------------------SpDG~~l~SGdsdG~v~~  458 (503)
T KOG0282|consen  413 STVPPFRLNKKKRFEGHSVAGYSCQVDF----------------------------------SPDGRTLCSGDSDGKVNF  458 (503)
T ss_pred             ecccccccCHhhhhcceeccCceeeEEE----------------------------------cCCCCeEEeecCCccEEE
Confidence            87643   23356678874433  4445                                  999999999999999999


Q ss_pred             EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCC-cEEEEeecCC
Q 005277          650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGALSK  702 (704)
Q Consensus       650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g-~~La~gs~dg  702 (704)
                      ||..+..               .+..++.|..++..+.|+|.. ..+|+|+.+|
T Consensus       459 wdwkt~k---------------l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G  497 (503)
T KOG0282|consen  459 WDWKTTK---------------LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG  497 (503)
T ss_pred             eechhhh---------------hhhccccCCcceEEEEecCCCcceeEecccCc
Confidence            9998853               467888999999999999964 5788888887

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.8e-32  Score=284.77  Aligned_cols=275  Identities=24%  Similarity=0.443  Sum_probs=246.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      ...|+|++|++..++||+|+..|...+|.+..                            ...+..+.-...+|..++|+
T Consensus       265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~----------------------------f~lih~LSis~~~I~t~~~N  316 (893)
T KOG0291|consen  265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD----------------------------FNLIHSLSISDQKILTVSFN  316 (893)
T ss_pred             ccceeeeeccCCceEEEEEecCCeeEEEecCC----------------------------ceEEEEeecccceeeEEEec
Confidence            37899999999999999999999999999876                            23444444455789999999


Q ss_pred             CCCCEEEEEeCC-CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCee
Q 005277          431 PLGDFILSSSAD-TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD  509 (704)
Q Consensus       431 p~~~~l~s~s~D-g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~  509 (704)
                      ..|.+|+.|+.. |.+-||++.+..-+...++|...+.+++++|||+++|+|+.||.|+|||...+-+..+|..|.+.|+
T Consensus       317 ~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt  396 (893)
T KOG0291|consen  317 STGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT  396 (893)
T ss_pred             ccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE
Confidence            999999977654 8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-CCEEEEEEecCCCEEEEEeCCC-eEEEEeCCCCeeeeeecC
Q 005277          510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDG-TIMMWDLASGRCVTPLMG  587 (704)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~i~~l~~spdg~~l~sg~~dg-~I~iwdl~~~~~~~~~~~  587 (704)
                      .+.|+..|+.+++.|-||+|+.||+...++.++|+... ....|++..|.|..+++|+.|. .|.+|++.+|+.+..+.|
T Consensus       397 ~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG  476 (893)
T KOG0291|consen  397 AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG  476 (893)
T ss_pred             EEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC
Confidence            99999999999999999999999999999999997543 3678899999999999998876 699999999999999999


Q ss_pred             CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCc
Q 005277          588 HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT  667 (704)
Q Consensus       588 h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~  667 (704)
                      |.++|.+++|                                  +|+++.|++||.|.+|++||+-.....         
T Consensus       477 HEgPVs~l~f----------------------------------~~~~~~LaS~SWDkTVRiW~if~s~~~---------  513 (893)
T KOG0291|consen  477 HEGPVSGLSF----------------------------------SPDGSLLASGSWDKTVRIWDIFSSSGT---------  513 (893)
T ss_pred             CCCcceeeEE----------------------------------ccccCeEEeccccceEEEEEeeccCce---------
Confidence            9999999999                                  999999999999999999999775321         


Q ss_pred             cccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          668 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       668 ~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                           +.++ .....|.+++|+|+|.-||+++.||
T Consensus       514 -----vEtl-~i~sdvl~vsfrPdG~elaVaTldg  542 (893)
T KOG0291|consen  514 -----VETL-EIRSDVLAVSFRPDGKELAVATLDG  542 (893)
T ss_pred             -----eeeE-eeccceeEEEEcCCCCeEEEEEecc
Confidence                 2222 3456799999999999999999987

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.8e-32  Score=265.79  Aligned_cols=280  Identities=21%  Similarity=0.307  Sum_probs=242.3

Q ss_pred             EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      .+|..|...|.+++.+|+.+++|+|+.|-.-.||++.+                            ......+.+|...|
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~----------------------------ge~~~eltgHKDSV  109 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIST----------------------------GEFAGELTGHKDSV  109 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccC----------------------------CcceeEecCCCCce
Confidence            46889999999999999999999999999999999876                            23456678999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      +++.|+.+|.+|+||..+|.|+||...++.....+......+.=+.|+|.+..|+.|+.||.+-+|.+.+....+.+.||
T Consensus       110 t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh  189 (399)
T KOG0296|consen  110 TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH  189 (399)
T ss_pred             EEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC
Confidence            99999999999999999999999999999988888755666777999999999999999999999999998899999999


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec---------------------------------------
Q 005277          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---------------------------------------  545 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---------------------------------------  545 (704)
                      ..+++|-.|.|+|+.+++|..||+|++|+..+++++..+.+                                       
T Consensus       190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~  269 (399)
T KOG0296|consen  190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN  269 (399)
T ss_pred             CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence            99999999999999999999999999999999987765431                                       


Q ss_pred             ------------CCCCEEEEEE---ecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcccccccc
Q 005277          546 ------------HRSMILSLAM---SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKI  610 (704)
Q Consensus       546 ------------h~~~i~~l~~---spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~  610 (704)
                                  +...+.|+.+   +..-.+.|+|+-||+|.|||+...++.. +-.|...|..+.|             
T Consensus       270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~-~c~he~~V~~l~w-------------  335 (399)
T KOG0296|consen  270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH-ICEHEDGVTKLKW-------------  335 (399)
T ss_pred             ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe-eccCCCceEEEEE-------------
Confidence                        1111122222   2233467889999999999998776544 4458888999999             


Q ss_pred             ccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc
Q 005277          611 SDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR  690 (704)
Q Consensus       611 ~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~  690 (704)
                                           -+ ..+|++++.||.|+.||.++++               ++.++.+|..+|.+++.+|
T Consensus       336 ---------------------~~-t~~l~t~c~~g~v~~wDaRtG~---------------l~~~y~GH~~~Il~f~ls~  378 (399)
T KOG0296|consen  336 ---------------------LN-TDYLLTACANGKVRQWDARTGQ---------------LKFTYTGHQMGILDFALSP  378 (399)
T ss_pred             ---------------------cC-cchheeeccCceEEeeeccccc---------------eEEEEecCchheeEEEEcC
Confidence                                 55 6799999999999999999985               4678899999999999999


Q ss_pred             CCcEEEEeecCCC
Q 005277          691 RNLLFAAGALSKT  703 (704)
Q Consensus       691 ~g~~La~gs~dgt  703 (704)
                      +.++++++|.|++
T Consensus       379 ~~~~vvT~s~D~~  391 (399)
T KOG0296|consen  379 QKRLVVTVSDDNT  391 (399)
T ss_pred             CCcEEEEecCCCe
Confidence            9999999999986

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-32  Score=290.70  Aligned_cols=295  Identities=26%  Similarity=0.423  Sum_probs=264.0

Q ss_pred             ccccCcCCCCCCCCCCCCCCCCChhHHHHHHHhccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCc
Q 005277          295 RLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSS  374 (704)
Q Consensus       295 ~~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~  374 (704)
                      ...+..+.++|....++++..++|...+.....+...+++|+.....+....-.+ .+.|+++.|+++|++||+|..+|.
T Consensus       162 ~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~  240 (484)
T KOG0305|consen  162 PQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGT  240 (484)
T ss_pred             cCChhhhccCCcccccHhhhHhhcccCCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCCe
Confidence            4457788999999999999999999888888999999999999887766655555 889999999999999999999999


Q ss_pred             EEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC-CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 005277          375 LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN  453 (704)
Q Consensus       375 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~  453 (704)
                      |.|||...                            .+....+.+ |...|-+++|.  +..+.+|+.|+.|..+|++..
T Consensus       241 v~iwD~~~----------------------------~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~  290 (484)
T KOG0305|consen  241 VQIWDVKE----------------------------QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRIS  290 (484)
T ss_pred             EEEEehhh----------------------------ccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecc
Confidence            99999875                            233344555 99999999999  677889999999999999988


Q ss_pred             ceeEE-eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcC-CCCEEEEE--ECCCcE
Q 005277          454 ANLVC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATG--SSDKTV  529 (704)
Q Consensus       454 ~~~~~-~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tg--s~dg~I  529 (704)
                      +.... +.+|...|+.++|++++.++|+|+.|+.+.|||.....+...+..|...|.+++|+| ...+||+|  +.|++|
T Consensus       291 ~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i  370 (484)
T KOG0305|consen  291 QHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCI  370 (484)
T ss_pred             hhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence            77665 889999999999999999999999999999999998899999999999999999999 46788885  479999


Q ss_pred             EEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE--EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccc
Q 005277          530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS--GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAY  607 (704)
Q Consensus       530 ~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s--g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~  607 (704)
                      ++||..+|..+.... ..+.|.+|.|++..+-|++  |..++.|.||+..+.+++..+.+|...|..+++          
T Consensus       371 ~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~----------  439 (484)
T KOG0305|consen  371 KFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLAL----------  439 (484)
T ss_pred             EEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEE----------
Confidence            999999999988764 5678999999999876666  456779999999999999999999999999999          


Q ss_pred             cccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          608 LKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                                              +|||..+++|+.|.++++|++-..
T Consensus       440 ------------------------SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  440 ------------------------SPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ------------------------CCCCCEEEEecccCcEEeccccCC
Confidence                                    999999999999999999999875

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-32  Score=282.74  Aligned_cols=280  Identities=23%  Similarity=0.384  Sum_probs=251.2

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      +..+...|-|+.|+|...+++++-.+|.|.|||.++                            ...++.+.-..-||.+
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyet----------------------------qtmVksfeV~~~PvRa   60 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYET----------------------------QTMVKSFEVSEVPVRA   60 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEeccc----------------------------ceeeeeeeecccchhh
Confidence            456788999999999999999999999999999876                            2344445556678999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEeccCC
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHL  505 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-~~~~~~~~~~~  505 (704)
                      ..|-+..+++++|+.|..|++|+..++..+..|..|..-|++++.+|...+++++|.|-+|++||.+. ..+.++|.||.
T Consensus        61 ~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~  140 (794)
T KOG0276|consen   61 AKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE  140 (794)
T ss_pred             heeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999986 46788999999


Q ss_pred             CCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC--CEEEEEeCCCeEEEEeCCCCeee
Q 005277          506 SDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG--RYMASGDEDGTIMMWDLASGRCV  582 (704)
Q Consensus       506 ~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg--~~l~sg~~dg~I~iwdl~~~~~~  582 (704)
                      .-|.+++|+| |.+.++++|-|++|++|.+.+..+..++.+|...|+|+.+-+-|  .+|++|++|..|+|||..+..++
T Consensus       141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV  220 (794)
T KOG0276|consen  141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV  220 (794)
T ss_pred             eEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH
Confidence            9999999999 57899999999999999999999999999999999999999855  69999999999999999999999


Q ss_pred             eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccc
Q 005277          583 TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE  662 (704)
Q Consensus       583 ~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~  662 (704)
                      +++.||...|..+.|                                  +|.=.+++|||.||+|+||+-.+-..     
T Consensus       221 ~TLeGHt~Nvs~v~f----------------------------------hp~lpiiisgsEDGTvriWhs~Ty~l-----  261 (794)
T KOG0276|consen  221 QTLEGHTNNVSFVFF----------------------------------HPELPIIISGSEDGTVRIWNSKTYKL-----  261 (794)
T ss_pred             HHhhcccccceEEEe----------------------------------cCCCcEEEEecCCccEEEecCcceeh-----
Confidence            999999999999988                                  89999999999999999999877432     


Q ss_pred             cccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       663 ~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                ..++.-.-..|.|++-.+.+..+++|...|.
T Consensus       262 ----------E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~  292 (794)
T KOG0276|consen  262 ----------EKTLNYGLERVWCIAAHKGDGKIAVGFDEGS  292 (794)
T ss_pred             ----------hhhhhcCCceEEEEeecCCCCeEEEeccCCc
Confidence                      3345555667888888887777888777664

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6e-32  Score=286.09  Aligned_cols=279  Identities=24%  Similarity=0.425  Sum_probs=247.7

Q ss_pred             EeeCCCCEEEEEE-cCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          347 FINTHNGLNCASI-SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       347 ~~~~~~~V~~~~f-s~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      +.+.++.|..+.| .|+.++||++++.+.+|+|++.++                             ....+.||+..|.
T Consensus       319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~-----------------------------~c~ii~GH~e~vl  369 (775)
T KOG0319|consen  319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS-----------------------------YCQIIPGHTEAVL  369 (775)
T ss_pred             hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC-----------------------------ceEEEeCchhhee
Confidence            4577788888887 567899999999999999987652                             2347889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCCce---
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQP---  497 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~~~---  497 (704)
                      ++....+|.+|+|||.|.++++|.++.+.    ++....+|+..|.+++++.. ..+|+++|.|+++++|++...+.   
T Consensus       370 SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~  449 (775)
T KOG0319|consen  370 SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF  449 (775)
T ss_pred             eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence            99966678899999999999999885432    35667899999999999774 46899999999999999976221   


Q ss_pred             --e----EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277          498 --L----RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (704)
Q Consensus       498 --~----~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I  571 (704)
                        .    .....|..+|+|++.+|+..+|||||.|++.+||++.......++.||...|.|+.|+|..+.+++++.|++|
T Consensus       450 ~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~Tv  529 (775)
T KOG0319|consen  450 PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTV  529 (775)
T ss_pred             cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceE
Confidence              1    1234799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEe
Q 005277          572 MMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD  651 (704)
Q Consensus       572 ~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd  651 (704)
                      +||.+.+..+++++.||+..|....|                                  -.+|..|++++.||-|++|+
T Consensus       530 KIW~is~fSClkT~eGH~~aVlra~F----------------------------------~~~~~qliS~~adGliKlWn  575 (775)
T KOG0319|consen  530 KIWSISTFSCLKTFEGHTSAVLRASF----------------------------------IRNGKQLISAGADGLIKLWN  575 (775)
T ss_pred             EEEEeccceeeeeecCccceeEeeee----------------------------------eeCCcEEEeccCCCcEEEEe
Confidence            99999999999999999999999999                                  77899999999999999999


Q ss_pred             CCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          652 VTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      +.++.               ++.++..|...|.+++-+|....+++|+.||.
T Consensus       576 ikt~e---------------C~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~  612 (775)
T KOG0319|consen  576 IKTNE---------------CEMTLDAHNDRVWALSVSPLLDMFVTGGGDGR  612 (775)
T ss_pred             ccchh---------------hhhhhhhccceeEEEeecCccceeEecCCCeE
Confidence            99874               57788999999999999999999999999873

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.4e-32  Score=266.54  Aligned_cols=242  Identities=26%  Similarity=0.501  Sum_probs=226.2

Q ss_pred             ccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 005277          411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW  490 (704)
Q Consensus       411 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lw  490 (704)
                      .+.++.+.+|.+.|.|+++.|-+.++++|+.|++|+|||+.+++...++.+|...|..+++|+...|+++++.|+.|+.|
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCe
Q 005277          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (704)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~  570 (704)
                      |++..+.++.+.||.+.|.|++.||.-+.|++|+.|.++|+||+++...+.++.||..+|.++.+.|-...+++|+.|++
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t  300 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST  300 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888999999999


Q ss_pred             EEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEE
Q 005277          571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLW  650 (704)
Q Consensus       571 I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iW  650 (704)
                      |++||++.|+.+.++..|...|.++..                                  +|....+|+++.| .|+-|
T Consensus       301 vrlWDl~agkt~~tlt~hkksvral~l----------------------------------hP~e~~fASas~d-nik~w  345 (460)
T KOG0285|consen  301 VRLWDLRAGKTMITLTHHKKSVRALCL----------------------------------HPKENLFASASPD-NIKQW  345 (460)
T ss_pred             EEEeeeccCceeEeeecccceeeEEec----------------------------------CCchhhhhccCCc-cceec
Confidence            999999999999999999999999988                                  9999999999987 69999


Q ss_pred             eCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          651 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       651 d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ++..+..               +..+.+|+.-|.+++.+.||- +++|+.+|+
T Consensus       346 ~~p~g~f---------------~~nlsgh~~iintl~~nsD~v-~~~G~dng~  382 (460)
T KOG0285|consen  346 KLPEGEF---------------LQNLSGHNAIINTLSVNSDGV-LVSGGDNGS  382 (460)
T ss_pred             cCCccch---------------hhccccccceeeeeeeccCce-EEEcCCceE
Confidence            9988754               455778899999999999884 556766653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4.8e-33  Score=270.19  Aligned_cols=258  Identities=27%  Similarity=0.572  Sum_probs=226.8

Q ss_pred             HHhcc-CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccc
Q 005277          325 LEDLR-NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED  403 (704)
Q Consensus       325 ~~~~~-~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~  403 (704)
                      +..++ +.+++|+... -.|.+++.+|.+.|.|+.|.  .+.|++|++|.+|+|||+++                     
T Consensus       211 VSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t---------------------  266 (499)
T KOG0281|consen  211 VSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT---------------------  266 (499)
T ss_pred             hcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC---------------------
Confidence            34444 4788887653 34667889999999999995  56999999999999999987                     


Q ss_pred             ccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeecCCcCeeEEEEcCCCCEEEE
Q 005277          404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQGHYFAS  480 (704)
Q Consensus       404 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~v~~sp~~~~l~s  480 (704)
                             +.....+.+|...|..+.|+  +.+++++|.|.++.+||+.+...   ...+.||...|..+.|+  .+|+++
T Consensus       267 -------ge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVs  335 (499)
T KOG0281|consen  267 -------GEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVS  335 (499)
T ss_pred             -------CchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEE
Confidence                   45667788999999999998  77999999999999999987653   34567999999999995  669999


Q ss_pred             EeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCC
Q 005277          481 SSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR  560 (704)
Q Consensus       481 gs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~  560 (704)
                      ++.|++|++|++.+.+.++++.+|...|.|+.+  +++++++|++|.+|++||+..|.+++.+.||..-|.|+.|  |.+
T Consensus       336 ASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~k  411 (499)
T KOG0281|consen  336 ASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNK  411 (499)
T ss_pred             ecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCc
Confidence            999999999999999999999999999999986  6889999999999999999999999999999999999999  578


Q ss_pred             EEEEEeCCCeEEEEeCCCCe---------eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeeccc
Q 005277          561 YMASGDEDGTIMMWDLASGR---------CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA  631 (704)
Q Consensus       561 ~l~sg~~dg~I~iwdl~~~~---------~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  631 (704)
                      .+++|+.||+|++||+..+.         ++.++..|++.|..+.|                                  
T Consensus       412 rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF----------------------------------  457 (499)
T KOG0281|consen  412 RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF----------------------------------  457 (499)
T ss_pred             eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee----------------------------------
Confidence            89999999999999998753         34556679999999988                                  


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          632 SCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       632 s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                        |...+++++.|.+|.|||+..+..
T Consensus       458 --D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  458 --DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             --cceEEEeccCCCeEEEEEcCCCCc
Confidence              567899999999999999988754

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.5e-31  Score=292.19  Aligned_cols=249  Identities=32%  Similarity=0.620  Sum_probs=227.8

Q ss_pred             EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      ...+.+|...|++++|+||++++++|+.|++|+|||+..                           ....++.+.+|...
T Consensus       196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~---------------------------~~~~~~~l~gH~~~  248 (456)
T KOG0266|consen  196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD---------------------------DGRNLKTLKGHSTY  248 (456)
T ss_pred             hccccccccceeeeEECCCCcEEEEecCCceEEEeeccC---------------------------CCeEEEEecCCCCc
Confidence            444578999999999999999999999999999999843                           13577888999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEe
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLRIM  501 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~--~~~~~  501 (704)
                      |++++|+|+++++++|+.|++|+|||+++++++..+.+|..+|++++|++++++|++++.|+.|++||+.++.  +...+
T Consensus       249 v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  328 (456)
T KOG0266|consen  249 VTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLL  328 (456)
T ss_pred             eEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998  56777


Q ss_pred             ccCCCC--eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCC---EEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          502 AGHLSD--VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM---ILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       502 ~~~~~~--V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~---i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                      .++...  +.+++|+|++.++++++.|+.+++||++.+.++..+.+|...   +.+...++.|.++++|+.|+.|.+||+
T Consensus       329 ~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~  408 (456)
T KOG0266|consen  329 SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDS  408 (456)
T ss_pred             cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeC
Confidence            776665  999999999999999999999999999999999999999875   444556779999999999999999999


Q ss_pred             CCCeeeeeecCC-CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe--CCCcEEEEeCC
Q 005277          577 ASGRCVTPLMGH-TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS--ADCTVKLWDVT  653 (704)
Q Consensus       577 ~~~~~~~~~~~h-~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs--~Dg~V~iWd~~  653 (704)
                      .++..+..+.+| ...+..+.+                                  ++..+++++++  .|+.+++|...
T Consensus       409 ~s~~~~~~l~~h~~~~~~~~~~----------------------------------~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  409 SSGGILQRLEGHSKAAVSDLSS----------------------------------HPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CccchhhhhcCCCCCceecccc----------------------------------CCCcCeeeecCcCCCceEEEecCC
Confidence            999999999999 888889988                                  99999999998  78999999764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.6e-32  Score=285.30  Aligned_cols=258  Identities=27%  Similarity=0.524  Sum_probs=229.3

Q ss_pred             CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC
Q 005277          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (704)
Q Consensus       340 p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (704)
                      |...+..+.+|.+.|.+++...+|.+||+|+.|.+|++|.++...                        .....+....|
T Consensus       354 ~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~------------------------~~~~~~a~~~g  409 (775)
T KOG0319|consen  354 PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC------------------------SKSLCVAQANG  409 (775)
T ss_pred             CCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCc------------------------chhhhhhhhcc
Confidence            333344678999999999977778999999999999999984311                        11234556679


Q ss_pred             CccCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce-----e----EEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEE
Q 005277          420 HSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNAN-----L----VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI  489 (704)
Q Consensus       420 h~~~V~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~-----~----~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~l  489 (704)
                      |++.|.+++++..+ .+|+++|.|+++++|++...+.     .    .+...|...|.+++.+|+.+.+||||.|++++|
T Consensus       410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi  489 (775)
T KOG0319|consen  410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI  489 (775)
T ss_pred             cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence            99999999997765 4789999999999999976221     1    123469999999999999999999999999999


Q ss_pred             EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC
Q 005277          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG  569 (704)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg  569 (704)
                      |+++.......+.||...|.||.|+|+.+.++|+|.|++|+||.+.+..|+.+|.||...|..+.|-.+|..|++++.||
T Consensus       490 W~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG  569 (775)
T KOG0319|consen  490 WDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG  569 (775)
T ss_pred             ecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                      .|++|++.++.++.++.+|...||++..                                  ++.+.+++||+.||.|.+
T Consensus       570 liKlWnikt~eC~~tlD~H~DrvWaL~~----------------------------------~~~~~~~~tgg~Dg~i~~  615 (775)
T KOG0319|consen  570 LIKLWNIKTNECEMTLDAHNDRVWALSV----------------------------------SPLLDMFVTGGGDGRIIF  615 (775)
T ss_pred             cEEEEeccchhhhhhhhhccceeEEEee----------------------------------cCccceeEecCCCeEEEE
Confidence            9999999999999999999999999998                                  899999999999999999


Q ss_pred             EeCCCC
Q 005277          650 WDVTTS  655 (704)
Q Consensus       650 Wd~~~~  655 (704)
                      |.=.+.
T Consensus       616 wkD~Te  621 (775)
T KOG0319|consen  616 WKDVTE  621 (775)
T ss_pred             eecCcH
Confidence            975543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.5e-31  Score=255.98  Aligned_cols=285  Identities=21%  Similarity=0.296  Sum_probs=241.8

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      +....+-|..|||||++|++|+.||.|.+||..+++...-.                    .......+.-|..+|.|+.
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL--------------------kYQAqd~fMMmd~aVlci~  270 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL--------------------KYQAQDNFMMMDDAVLCIS  270 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhh--------------------hhhhhcceeecccceEEEe
Confidence            44556889999999999999999999999998764432210                    0112223455789999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC
Q 005277          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD  507 (704)
Q Consensus       429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~  507 (704)
                      |+.|...|++|+.||.|++|.+.+|.|+..|. .|+..|+++.|+.|+..+++++.|.++++.-+..++.+..+.||.+-
T Consensus       271 FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy  350 (508)
T KOG0275|consen  271 FSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY  350 (508)
T ss_pred             ecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccc
Confidence            99999999999999999999999999999987 89999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec--CCCCEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP  584 (704)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h~~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~~~~~~  584 (704)
                      |+...|.++|.++++++.||+|++|+..+..|+.+|+.  ...+|.++-.-| +...++++...++|.|.++ .|+.++.
T Consensus       351 vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrs  429 (508)
T KOG0275|consen  351 VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRS  429 (508)
T ss_pred             ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEee
Confidence            99999999999999999999999999999999999874  345788888777 5568888999999999996 5777777


Q ss_pred             ecCCC---ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277          585 LMGHT---SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT  661 (704)
Q Consensus       585 ~~~h~---~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~  661 (704)
                      +....   +...+.                                  |.||.|.++.+.+.|+.++.|.+.++..    
T Consensus       430 fsSGkREgGdFi~~----------------------------------~lSpkGewiYcigED~vlYCF~~~sG~L----  471 (508)
T KOG0275|consen  430 FSSGKREGGDFINA----------------------------------ILSPKGEWIYCIGEDGVLYCFSVLSGKL----  471 (508)
T ss_pred             eccCCccCCceEEE----------------------------------EecCCCcEEEEEccCcEEEEEEeecCce----
Confidence            74321   222222                                  2399999999999999999999998753    


Q ss_pred             ccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          662 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       662 ~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                 -.+++.|...|..+.-+|..++||+-+.||.
T Consensus       472 -----------E~tl~VhEkdvIGl~HHPHqNllAsYsEDgl  502 (508)
T KOG0275|consen  472 -----------ERTLPVHEKDVIGLTHHPHQNLLASYSEDGL  502 (508)
T ss_pred             -----------eeeeecccccccccccCcccchhhhhcccch
Confidence                       3466778888999999999999999888874

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.3e-30  Score=266.14  Aligned_cols=285  Identities=24%  Similarity=0.364  Sum_probs=234.2

Q ss_pred             EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      ..++..|..=|+|+.|||||.++|+.+.||.|.|||=.+.....                         .+..-.+|.+.
T Consensus       183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg-------------------------~l~~~~aHkGs  237 (603)
T KOG0318|consen  183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVG-------------------------ELEDSDAHKGS  237 (603)
T ss_pred             eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEE-------------------------EecCCCCcccc
Confidence            34667788889999999999999999999999999965422111                         11113489999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCc---CeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY---PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~---~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~  500 (704)
                      |++++|+||+..++++|.|.+++|||+.+.+++.++.....   .-..+-|-  +..|++.+.+|++.+++.....++..
T Consensus       238 IfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~  315 (603)
T KOG0318|consen  238 IFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKV  315 (603)
T ss_pred             EEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhhe
Confidence            99999999999999999999999999999999888764332   22334453  66799999999999999999999999


Q ss_pred             eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE--------------------------------------
Q 005277          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI--------------------------------------  542 (704)
Q Consensus       501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~--------------------------------------  542 (704)
                      +.+|...|+++..+|++.+|++|+.||.|.-||..+|..-+.                                      
T Consensus       316 i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~  395 (603)
T KOG0318|consen  316 ISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNG  395 (603)
T ss_pred             ecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCc
Confidence            999999999999999999999999999999999865532110                                      


Q ss_pred             -----------------------------------eecC--------CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277          543 -----------------------------------FIGH--------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (704)
Q Consensus       543 -----------------------------------~~~h--------~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~  579 (704)
                                                         +..+        .-...+++++|++..+++|+.||.|+||.+..+
T Consensus       396 ~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~  475 (603)
T KOG0318|consen  396 YTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGD  475 (603)
T ss_pred             ccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCC
Confidence                                               0001        112457889999999999999999999999876


Q ss_pred             ee--eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          580 RC--VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       580 ~~--~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      ..  ...+..|.++|+++++                                  |||+.+||+|...+.|.+||+.+...
T Consensus       476 ~l~ee~~~~~h~a~iT~vay----------------------------------Spd~~yla~~Da~rkvv~yd~~s~~~  521 (603)
T KOG0318|consen  476 ELKEEAKLLEHRAAITDVAY----------------------------------SPDGAYLAAGDASRKVVLYDVASREV  521 (603)
T ss_pred             cccceeeeecccCCceEEEE----------------------------------CCCCcEEEEeccCCcEEEEEcccCce
Confidence            53  3356779999999999                                  99999999999999999999998754


Q ss_pred             ccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          658 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       658 ~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                    ....+.-|...|.+|+|+|++.++|+|+.|-+
T Consensus       522 --------------~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~  553 (603)
T KOG0318|consen  522 --------------KTNRWAFHTAKINCVAWSPNNKLVATGSLDTN  553 (603)
T ss_pred             --------------ecceeeeeeeeEEEEEeCCCceEEEeccccce
Confidence                          13344458889999999999999999998853

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-31  Score=285.14  Aligned_cols=277  Identities=25%  Similarity=0.446  Sum_probs=249.6

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      .....|-.++|+|...+++++--.|.|++||..-                            ...+..+..|.|||.+++
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM----------------------------~tli~rFdeHdGpVRgv~   58 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM----------------------------GTLIDRFDEHDGPVRGVD   58 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehhhh----------------------------hhHHhhhhccCCccceee
Confidence            3456788999999999999999999999999764                            335566889999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCe
Q 005277          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV  508 (704)
Q Consensus       429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V  508 (704)
                      |+|...+++||+.|-.|++|+..+.+++.++.+|-..|..+.|++.-.+++++|.|.+|+||++.+.+++..+.||..-|
T Consensus        59 FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYV  138 (1202)
T KOG0292|consen   59 FHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYV  138 (1202)
T ss_pred             ecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEEeCCC--------C-------------------c--EEEEeecCCCCEEEEEEecCC
Q 005277          509 DCVRWHINCNYIATGSSDKTVRLWDVSS--------G-------------------E--CVRIFIGHRSMILSLAMSPDG  559 (704)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~--------~-------------------~--~~~~~~~h~~~i~~l~~spdg  559 (704)
                      .|..|||....++++|-|.+||+||+..        +                   .  ....+.||...|+-++|+|.-
T Consensus       139 McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl  218 (1202)
T KOG0292|consen  139 MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL  218 (1202)
T ss_pred             EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc
Confidence            9999999999999999999999999842        1                   0  123457899999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCe--eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277          560 RYMASGDEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL  637 (704)
Q Consensus       560 ~~l~sg~~dg~I~iwdl~~~~--~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  637 (704)
                      ..+++|++|..|++|.+...+  .+.++++|.+.|.++-|                                  +|..++
T Consensus       219 pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlf----------------------------------hp~q~l  264 (1202)
T KOG0292|consen  219 PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLF----------------------------------HPHQDL  264 (1202)
T ss_pred             ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEe----------------------------------cCccce
Confidence            999999999999999987544  46778999999999999                                  999999


Q ss_pred             EEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          638 LASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       638 lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      +++.|.|++|+|||+...+.               +.+++........++-+|..+++|+|-..|
T Consensus       265 IlSnsEDksirVwDm~kRt~---------------v~tfrrendRFW~laahP~lNLfAAgHDsG  314 (1202)
T KOG0292|consen  265 ILSNSEDKSIRVWDMTKRTS---------------VQTFRRENDRFWILAAHPELNLFAAGHDSG  314 (1202)
T ss_pred             eEecCCCccEEEEecccccc---------------eeeeeccCCeEEEEEecCCcceeeeecCCc
Confidence            99999999999999988643               566767778889999999999999887665

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=8.9e-31  Score=246.21  Aligned_cols=279  Identities=22%  Similarity=0.382  Sum_probs=245.4

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      +.+|...|.+++|+-+|..||+|+.|+++.+|++....                          ........+|.+.|-.
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--------------------------~~~~~~~~gh~~svdq   69 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--------------------------FRKELVYRGHTDSVDQ   69 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchh--------------------------hhhhhcccCCCcchhh
Confidence            45778889999999999999999999999999997631                          1223346789999999


Q ss_pred             EEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC
Q 005277          427 ASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (704)
Q Consensus       427 l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~  505 (704)
                      ++|+|.. ..+++++.|.+|++||++.++++.......+.+ -+.|+|+|.+++.++.|..|.+.|.++.+...... ..
T Consensus        70 l~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~  147 (313)
T KOG1407|consen   70 LCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FK  147 (313)
T ss_pred             heeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-cc
Confidence            9998854 578899999999999999999998887655555 58999999999999999999999999887766554 44


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                      ..+..++|+-++++++.....|+|.|.....-+++..++.|.....||.|+|+|+++|+|+.|..+.+||+...-+++.+
T Consensus       148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i  227 (313)
T KOG1407|consen  148 FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI  227 (313)
T ss_pred             ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence            56788899977777777777899999999999999999999999999999999999999999999999999998899999


Q ss_pred             cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccccc
Q 005277          586 MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS  665 (704)
Q Consensus       586 ~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~  665 (704)
                      ..+.-+|..++|                                  |.+|++||+||+|..|-|=++++|.++.++    
T Consensus       228 sRldwpVRTlSF----------------------------------S~dg~~lASaSEDh~IDIA~vetGd~~~eI----  269 (313)
T KOG1407|consen  228 SRLDWPVRTLSF----------------------------------SHDGRMLASASEDHFIDIAEVETGDRVWEI----  269 (313)
T ss_pred             ccccCceEEEEe----------------------------------ccCcceeeccCccceEEeEecccCCeEEEe----
Confidence            999999999999                                  999999999999999999999999775433    


Q ss_pred             CccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          666 GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       666 ~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                  .+.+|-+.|+|+|...+||.++.|+.
T Consensus       270 ------------~~~~~t~tVAWHPk~~LLAyA~ddk~  295 (313)
T KOG1407|consen  270 ------------PCEGPTFTVAWHPKRPLLAYACDDKD  295 (313)
T ss_pred             ------------eccCCceeEEecCCCceeeEEecCCC
Confidence                        35678899999999999999998864

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=6.4e-31  Score=283.89  Aligned_cols=269  Identities=23%  Similarity=0.357  Sum_probs=211.1

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCcccccccc---------------C--CCC------CC-------
Q 005277          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL---------------Q--GEN------DT-------  398 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~---------------~--~~~------~~-------  398 (704)
                      .|.+.|.|+.||+||+|||+|+.||.|+||.+............               +  ...      ..       
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            68899999999999999999999999999998762111000000               0  000      00       


Q ss_pred             CCc--ccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CC
Q 005277          399 TPR--EDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QG  475 (704)
Q Consensus       399 ~~~--~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~  475 (704)
                      .+.  .......-...++..+.||.+.|.++.||. +.+|+++|.|.|||||++....|+.+|. |..-|+||+|+| |.
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD  422 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD  422 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence            000  000001112346677899999999999996 5689999999999999999999999997 999999999999 89


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee---------cC
Q 005277          476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI---------GH  546 (704)
Q Consensus       476 ~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~---------~h  546 (704)
                      +||++|+-||.||||++...+.+.....+ .-|++++|.|+|++.++|+.+|.+++|+....+.+..+.         .|
T Consensus       423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~  501 (712)
T KOG0283|consen  423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG  501 (712)
T ss_pred             CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence            99999999999999999887665554444 789999999999999999999999999998776655442         12


Q ss_pred             CCCEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCeeeeeecCCCcee--eeeeeeeeehccccccccccccccceeeeee
Q 005277          547 RSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV--WTLAYRFLLLVTNAYLKISDKVSTGFLFYSL  623 (704)
Q Consensus       547 ~~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V--~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (704)
                      . .|+.+.|.|. ...|++.+.|..|+|+|.+...++..++|+...-  ....|                          
T Consensus       502 ~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asf--------------------------  554 (712)
T KOG0283|consen  502 K-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASF--------------------------  554 (712)
T ss_pred             c-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeE--------------------------
Confidence            3 7999999984 3457777899999999999999999998865322  23344                          


Q ss_pred             eEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          624 TIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       624 ~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                              +.||++|++|+.|..|+||++...
T Consensus       555 --------s~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  555 --------SSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             --------ccCCCEEEEeecCceEEEEeCCCC
Confidence                    789999999999999999998543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=2.2e-29  Score=258.12  Aligned_cols=259  Identities=37%  Similarity=0.645  Sum_probs=232.0

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      ..+.+|...... ....+..|...+.++.|+|++++|++++.||.|++|++...                          
T Consensus        31 g~i~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--------------------------   83 (289)
T cd00200          31 GTIKVWDLETGE-LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--------------------------   83 (289)
T ss_pred             cEEEEEEeeCCC-cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--------------------------
Confidence            456666544322 33456678888999999999999999999999999998751                          


Q ss_pred             CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEE
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI  489 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~l  489 (704)
                        .....+.+|...|.++.|++++.++++++.||.|++||+.+++....+..|...|.++.|+|++.++++++.|+.+++
T Consensus        84 --~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  161 (289)
T cd00200          84 --ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL  161 (289)
T ss_pred             --cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence              233455678889999999999888888888999999999988888889899999999999999999998888999999


Q ss_pred             EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC
Q 005277          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG  569 (704)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg  569 (704)
                      ||+++++.+..+..|...+.++.|+|+++.+++++.++.|++||+++++.+..+..|...+.+++|+|++.++++++.||
T Consensus       162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  241 (289)
T cd00200         162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG  241 (289)
T ss_pred             EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence            99999888988989999999999999999999999999999999999999998888999999999999999999888899


Q ss_pred             eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                      .|++||+.+++.+..+..|...+.++.|                                  ++++.+|++++.||.|++
T Consensus       242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~----------------------------------~~~~~~l~~~~~d~~i~i  287 (289)
T cd00200         242 TIRVWDLRTGECVQTLSGHTNSVTSLAW----------------------------------SPDGKRLASGSADGTIRI  287 (289)
T ss_pred             cEEEEEcCCceeEEEccccCCcEEEEEE----------------------------------CCCCCEEEEecCCCeEEe
Confidence            9999999999999999999999999999                                  999999999999999999


Q ss_pred             Ee
Q 005277          650 WD  651 (704)
Q Consensus       650 Wd  651 (704)
                      |+
T Consensus       288 w~  289 (289)
T cd00200         288 WD  289 (289)
T ss_pred             cC
Confidence            96

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=2.5e-30  Score=254.76  Aligned_cols=274  Identities=28%  Similarity=0.498  Sum_probs=235.9

Q ss_pred             eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      .-|.+-|.++...  +++|++|+.||.++||+..+                             +......||+++|.++
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-----------------------------k~~~~~~Ght~~ik~v  150 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-----------------------------KSIKTIVGHTGPIKSV  150 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCCeeEEEecCC-----------------------------ceEEEEecCCcceeee
Confidence            4577888888887  78999999999999999764                             5667788999999999


Q ss_pred             EEcCCCC---EEEEEeCCCeEEEEeCCCCce----eEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC-------
Q 005277          428 SFSPLGD---FILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-------  493 (704)
Q Consensus       428 ~~sp~~~---~l~s~s~Dg~I~lwd~~~~~~----~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~-------  493 (704)
                      +|.-.+.   .+++++.|.++++|.++.+..    +..-+||...|-+|...++|..|++|+.|.++.+|+..       
T Consensus       151 ~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~  230 (423)
T KOG0313|consen  151 AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDEL  230 (423)
T ss_pred             EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccc
Confidence            9865444   499999999999999887654    33345999999999999999999999999999999932       


Q ss_pred             ------------------CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEE
Q 005277          494 ------------------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM  555 (704)
Q Consensus       494 ------------------~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~  555 (704)
                                        +..|+..+.||..+|.+|.|++ ...+++++.|.+|+.||+.++.++..+.+ ...+.|+..
T Consensus       231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~  308 (423)
T KOG0313|consen  231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISY  308 (423)
T ss_pred             cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeec
Confidence                              2346778899999999999987 77899999999999999999999887754 567999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCe---eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277          556 SPDGRYMASGDEDGTIMMWDLASGR---CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS  632 (704)
Q Consensus       556 spdg~~l~sg~~dg~I~iwdl~~~~---~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  632 (704)
                      +|..++|++|+.|..|++||.+++.   ...++.+|.+.|.++.|                                  +
T Consensus       309 ~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkw----------------------------------s  354 (423)
T KOG0313|consen  309 SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKW----------------------------------S  354 (423)
T ss_pred             ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheec----------------------------------C
Confidence            9999999999999999999998763   45678899999999999                                  7


Q ss_pred             CCC-CEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          633 CEG-SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       633 ~~g-~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      |.. .+|++|+.||++++||+++..              .+++.+.+|...|.++.|+.. .++++|+.|++
T Consensus       355 p~~~~~~~S~S~D~t~klWDvRS~k--------------~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~  411 (423)
T KOG0313|consen  355 PTNEFQLVSGSYDNTVKLWDVRSTK--------------APLYDIAGHNDKVLSVDWNEG-GLIVSGGADNK  411 (423)
T ss_pred             CCCceEEEEEecCCeEEEEEeccCC--------------CcceeeccCCceEEEEeccCC-ceEEeccCcce
Confidence            765 578999999999999999865              247888999999999999754 46888888864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=3.2e-30  Score=285.00  Aligned_cols=307  Identities=23%  Similarity=0.384  Sum_probs=248.5

Q ss_pred             EEeeCCC-CEEEEEEcCCCCEEEEEe--CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277          346 TFINTHN-GLNCASISQDGSLVAGGF--SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (704)
Q Consensus       346 ~~~~~~~-~V~~~~fs~dg~~lasg~--~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (704)
                      ++.+|++ .|.+++.+|||..+|+|+  .||.++||+...........                .....+.......|.+
T Consensus         7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~----------------~~~l~k~l~~m~~h~~   70 (942)
T KOG0973|consen    7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEK----------------NENLPKHLCTMDDHDG   70 (942)
T ss_pred             cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhh----------------hcccchhheeeccccC
Confidence            4566654 589999999999999999  89999999976521111000                0002345566778999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCC------------------CceeEEeecCCcCeeEEEEcCCCCEEEEEeCC
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKL------------------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~------------------~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d  484 (704)
                      .|+|+.|+|||++||+||.|+.|.||....                  ++++..+.+|...|.+++|+|++.++++++.|
T Consensus        71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D  150 (942)
T KOG0973|consen   71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD  150 (942)
T ss_pred             ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc
Confidence            999999999999999999999999998772                  23567788999999999999999999999999


Q ss_pred             CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC------CCEEEEEEecC
Q 005277          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR------SMILSLAMSPD  558 (704)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~------~~i~~l~~spd  558 (704)
                      ++|.+|+..+...+..+.+|.+.|..+.|.|-|+|||+-+.|++|++|++.+-...+.+.++-      .....+.||||
T Consensus       151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD  230 (942)
T KOG0973|consen  151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD  230 (942)
T ss_pred             ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence            999999999999999999999999999999999999999999999999987766666665432      35788999999


Q ss_pred             CCEEEEEe----CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC
Q 005277          559 GRYMASGD----EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE  634 (704)
Q Consensus       559 g~~l~sg~----~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  634 (704)
                      |.+|++..    .-.++.|.+-.+.+.-..+-||.+++.++.|++..+-.......                     +..
T Consensus       231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~---------------------~~~  289 (942)
T KOG0973|consen  231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT---------------------STQ  289 (942)
T ss_pred             cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC---------------------ccC
Confidence            99999853    34579999988888888999999999999996544433221000                     222


Q ss_pred             CC----EEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          635 GS----LLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       635 g~----~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ++    .+|+||.|++|.||......++              +....-.+.+|..++|+|||..|.++|.|||
T Consensus       290 ~~~~y~i~AvgSqDrSlSVW~T~~~RPl--------------~vi~~lf~~SI~DmsWspdG~~LfacS~DGt  348 (942)
T KOG0973|consen  290 PNCYYCIAAVGSQDRSLSVWNTALPRPL--------------FVIHNLFNKSIVDMSWSPDGFSLFACSLDGT  348 (942)
T ss_pred             CCcceEEEEEecCCccEEEEecCCCCch--------------hhhhhhhcCceeeeeEcCCCCeEEEEecCCe
Confidence            22    7899999999999998766543              2223345678999999999999999999997

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.6e-30  Score=265.81  Aligned_cols=241  Identities=26%  Similarity=0.475  Sum_probs=216.8

Q ss_pred             ccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277          328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (704)
Q Consensus       328 ~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (704)
                      +...+.+|+-..... ...+.-..-+|.++.|-.-.+++++|+.|..|+||+.++                         
T Consensus        33 ynG~V~IWnyetqtm-VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt-------------------------   86 (794)
T KOG0276|consen   33 YNGDVQIWNYETQTM-VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT-------------------------   86 (794)
T ss_pred             ecCeeEEEeccccee-eeeeeecccchhhheeeeccceEEEecCCceEEEEeccc-------------------------
Confidence            455777886544322 223455667899999999999999999999999999987                         


Q ss_pred             CCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCC
Q 005277          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDR  485 (704)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg  485 (704)
                         ...+..+.+|+.-|.+++.+|...+++|+|.|-+|++||.+.. .+.++|.||..-|.+++|+| |.+.|+++|-|+
T Consensus        87 ---~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr  163 (794)
T KOG0276|consen   87 ---GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR  163 (794)
T ss_pred             ---ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence               4567888999999999999999999999999999999999854 67889999999999999999 778999999999


Q ss_pred             eEEEEECCCCceeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEE
Q 005277          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA  563 (704)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~  563 (704)
                      +|++|.+....+..++.+|...|+|+.|-+-  ..||++|+.|.+|++||.++..|++++.||...|..+.|+|.-..++
T Consensus       164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii  243 (794)
T KOG0276|consen  164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII  243 (794)
T ss_pred             cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence            9999999999999999999999999999874  47999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277          564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       564 sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      +|++||+++||.-.+-+...++.-.-..+|+++.
T Consensus       244 sgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~  277 (794)
T KOG0276|consen  244 SGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAA  277 (794)
T ss_pred             EecCCccEEEecCcceehhhhhhcCCceEEEEee
Confidence            9999999999999998888888777788998876

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4.3e-29  Score=236.17  Aligned_cols=259  Identities=19%  Similarity=0.323  Sum_probs=218.5

Q ss_pred             cCeEeecCCC-CCCeEEEEEe--eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277          329 RNRVHLSSAA-LPSVSFYTFI--NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (704)
Q Consensus       329 ~~~~~l~~~~-~p~~~~~~~~--~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (704)
                      .+++++|... ..+..+.+.+  +|...|.+++|+|.|++||+|+.|+++.||.-..                       
T Consensus        36 Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~-----------------------   92 (312)
T KOG0645|consen   36 DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED-----------------------   92 (312)
T ss_pred             CceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC-----------------------
Confidence            4577888776 3344444443  6888999999999999999999999999997432                       


Q ss_pred             CCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceeEEeecCCcCeeEEEEcCCCCEEEEEe
Q 005277          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASSS  482 (704)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~---~~~~~~~~h~~~V~~v~~sp~~~~l~sgs  482 (704)
                         +.......+.||...|.|++|+++|.+|++|+.|++|-||.+..+   .+...+.+|+..|..+.|+|...+|+++|
T Consensus        93 ---~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S  169 (312)
T KOG0645|consen   93 ---GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS  169 (312)
T ss_pred             ---CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEec
Confidence               235677889999999999999999999999999999999998744   56788899999999999999999999999


Q ss_pred             CCCeEEEEECC---CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC
Q 005277          483 HDRTARIWSMD---RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG  559 (704)
Q Consensus       483 ~dg~i~lwd~~---~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg  559 (704)
                      .|++|++|+-.   .-.+++.+.+|...|.+++|++.|..|++++.|++|+||-..+.-    -..|+.+++.+.|.  .
T Consensus       170 YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~  243 (312)
T KOG0645|consen  170 YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--N  243 (312)
T ss_pred             cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec--c
Confidence            99999999876   345789999999999999999999999999999999999865331    12477899999997  4


Q ss_pred             CEEEEEeCCCeEEEEeCCCC------eee-eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277          560 RYMASGDEDGTIMMWDLASG------RCV-TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS  632 (704)
Q Consensus       560 ~~l~sg~~dg~I~iwdl~~~------~~~-~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  632 (704)
                      ..|++++.|+.|+++.-..+      +.+ ..-..|...|.++.|                                  .
T Consensus       244 ~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w----------------------------------~  289 (312)
T KOG0645|consen  244 GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW----------------------------------N  289 (312)
T ss_pred             cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE----------------------------------c
Confidence            57999999999999976542      111 123568899999999                                  7


Q ss_pred             CC-CCEEEEEeCCCcEEEEeCC
Q 005277          633 CE-GSLLASGSADCTVKLWDVT  653 (704)
Q Consensus       633 ~~-g~~lasgs~Dg~V~iWd~~  653 (704)
                      |. +++|++|+.||.|++|.+.
T Consensus       290 p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  290 PKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCCCceeecCCCceEEEEEec
Confidence            84 7899999999999999874

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=1.6e-29  Score=248.18  Aligned_cols=260  Identities=20%  Similarity=0.299  Sum_probs=220.2

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      .++.++|...... ..+.+.+|.+.|+|+.||.||.+||+|..+|.|+||...+...                       
T Consensus        85 DD~AflW~~~~ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~-----------------------  140 (399)
T KOG0296|consen   85 DDLAFLWDISTGE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE-----------------------  140 (399)
T ss_pred             CceEEEEEccCCc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce-----------------------
Confidence            3567888776655 5667899999999999999999999999999999999886322                       


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEE
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~  488 (704)
                           ...+...-..+.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|+.++++=.|.|+|+.++++..||+|+
T Consensus       141 -----~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~  215 (399)
T KOG0296|consen  141 -----QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII  215 (399)
T ss_pred             -----EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence                 222223456788899999999999999999999999999888999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEeccC---------------------------------------------------CCCeeEEEEcC--
Q 005277          489 IWSMDRIQPLRIMAGH---------------------------------------------------LSDVDCVRWHI--  515 (704)
Q Consensus       489 lwd~~~~~~~~~~~~~---------------------------------------------------~~~V~~v~~~p--  515 (704)
                      +|+..+++++..+.+.                                                   ...+.|+.+.|  
T Consensus       216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s  295 (399)
T KOG0296|consen  216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS  295 (399)
T ss_pred             EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence            9999988877655410                                                   01112222222  


Q ss_pred             -CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeee
Q 005277          516 -NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWT  594 (704)
Q Consensus       516 -~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~s  594 (704)
                       .=.+.|+|+.||+|.|||+....... ...|..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.||...|.+
T Consensus       296 s~lpL~A~G~vdG~i~iyD~a~~~~R~-~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~  373 (399)
T KOG0296|consen  296 SKLPLAACGSVDGTIAIYDLAASTLRH-ICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD  373 (399)
T ss_pred             cccchhhcccccceEEEEecccchhhe-eccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeE
Confidence             22467889999999999998766554 447899999999998 789999999999999999999999999999999999


Q ss_pred             eeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277          595 LAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVT  653 (704)
Q Consensus       595 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~  653 (704)
                      +..                                  +|+.++++|+|.|++.+||++.
T Consensus       374 f~l----------------------------------s~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  374 FAL----------------------------------SPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEE----------------------------------cCCCcEEEEecCCCeEEEEecC
Confidence            998                                  9999999999999999999874

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.5e-30  Score=239.45  Aligned_cols=263  Identities=25%  Similarity=0.432  Sum_probs=224.5

Q ss_pred             CeEeecCC-CCCCeEEEEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277          330 NRVHLSSA-ALPSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (704)
Q Consensus       330 ~~~~l~~~-~~p~~~~~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (704)
                      .++++-.. ..+.+.........+++..++||++ .+.+++++.||+++|||+..                         
T Consensus        38 G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-------------------------   92 (311)
T KOG0277|consen   38 GRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-------------------------   92 (311)
T ss_pred             ceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC-------------------------
Confidence            35555444 3556666666778899999999997 67888999999999999653                         


Q ss_pred             CCCccceeeccCCccCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCC
Q 005277          408 NGRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDR  485 (704)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg  485 (704)
                        ...++..++.|...|+++.|++-. +.++++|.|++|++|+...++.+.++.+|...|....|+| .++.|+++|.|+
T Consensus        93 --~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~  170 (311)
T KOG0277|consen   93 --PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG  170 (311)
T ss_pred             --CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence              123667788999999999999855 4577889999999999999999999999999999999999 688999999999


Q ss_pred             eEEEEECCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC-cEEEEeecCCCCEEEEEEecC-CCEE
Q 005277          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPD-GRYM  562 (704)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~i~~l~~spd-g~~l  562 (704)
                      ++++||++.......+..|...+.|+.|+. +.+.++||+.|+.|+.||+++- .++..+.+|.-.|..++|||. ...|
T Consensus       171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL  250 (311)
T KOG0277|consen  171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL  250 (311)
T ss_pred             eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh
Confidence            999999987665566888999999999986 6789999999999999999864 567788899999999999995 4689


Q ss_pred             EEEeCCCeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEE
Q 005277          563 ASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG  641 (704)
Q Consensus       563 ~sg~~dg~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasg  641 (704)
                      ++++.|-+++|||...+ ..+.+...|+.-|..++|.                                 -.++.++|++
T Consensus       251 aSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws---------------------------------~~~~~~vAs~  297 (311)
T KOG0277|consen  251 ASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWS---------------------------------LFDPGQVAST  297 (311)
T ss_pred             hhccccceEEecccccchhhhhhhhccceEEeccccc---------------------------------cccCceeeec
Confidence            99999999999998754 4566677899999999993                                 2257799999


Q ss_pred             eCCCcEEEEeC
Q 005277          642 SADCTVKLWDV  652 (704)
Q Consensus       642 s~Dg~V~iWd~  652 (704)
                      +.|+.++||+-
T Consensus       298 gWDe~l~Vw~p  308 (311)
T KOG0277|consen  298 GWDELLYVWNP  308 (311)
T ss_pred             ccccceeeecc
Confidence            99999999983

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2e-29  Score=266.81  Aligned_cols=281  Identities=20%  Similarity=0.408  Sum_probs=249.5

Q ss_pred             eEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277          342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (704)
Q Consensus       342 ~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (704)
                      ..-+++.+|+..|.++++|.|...+++|. .+.|+||+..+.                            ++++++.  .
T Consensus       364 ~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~----------------------------kciRTi~--~  412 (888)
T KOG0306|consen  364 TSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL----------------------------KCIRTIT--C  412 (888)
T ss_pred             cceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc----------------------------ceeEEec--c
Confidence            33467889999999999999998888884 678999998763                            2333332  2


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-----Cc
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-----IQ  496 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-----~~  496 (704)
                      +-+.+..|.|.++++++|...|.+.++|+.+...+..++.|.+.||+++.+|++..+++||.|.+|++||..-     +.
T Consensus       413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt  492 (888)
T KOG0306|consen  413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT  492 (888)
T ss_pred             ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence            3788999999999999999999999999999999999999999999999999999999999999999999741     11


Q ss_pred             ee--------EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC
Q 005277          497 PL--------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (704)
Q Consensus       497 ~~--------~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d  568 (704)
                      ..        +++ .-...|.|++++|||++|+++--|.+|++|-+.+-+..-.+.||.-||.||.+|||++.++||+.|
T Consensus       493 ~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSAD  571 (888)
T KOG0306|consen  493 QKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSAD  571 (888)
T ss_pred             cceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCC
Confidence            11        112 245789999999999999999999999999999999888889999999999999999999999999


Q ss_pred             CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEE
Q 005277          569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVK  648 (704)
Q Consensus       569 g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~  648 (704)
                      .+|+||-+.-|.+-+.+.+|...|.++.|                                  -|...+++++|.||.|+
T Consensus       572 KnVKiWGLdFGDCHKS~fAHdDSvm~V~F----------------------------------~P~~~~FFt~gKD~kvK  617 (888)
T KOG0306|consen  572 KNVKIWGLDFGDCHKSFFAHDDSVMSVQF----------------------------------LPKTHLFFTCGKDGKVK  617 (888)
T ss_pred             CceEEeccccchhhhhhhcccCceeEEEE----------------------------------cccceeEEEecCcceEE
Confidence            99999999999999999999999999999                                  88999999999999999


Q ss_pred             EEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          649 LWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       649 iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      -||-..-               ..+..+++|...|+|++.+|+|.++++++.|.+
T Consensus       618 qWDg~kF---------------e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s  657 (888)
T KOG0306|consen  618 QWDGEKF---------------EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS  657 (888)
T ss_pred             eechhhh---------------hhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence            9997663               457889999999999999999999999999864

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=2.8e-29  Score=250.96  Aligned_cols=277  Identities=22%  Similarity=0.391  Sum_probs=244.6

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      .+++++...|....+++|+.|..+.++|...                            .+....+.||...|+++.|+|
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s----------------------------~q~l~~~~Gh~kki~~v~~~~  271 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPS----------------------------NQILATLKGHTKKITSVKFHK  271 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecch----------------------------hhhhhhccCcceEEEEEEecc
Confidence            3577777788778899999999999999765                            456778999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC--CCCee
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH--LSDVD  509 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~--~~~V~  509 (704)
                      +...+++++.|..|++|.............|..+|+.+..+|.|.||++++.||+..+.|++++..+......  .-.++
T Consensus       272 ~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t  351 (506)
T KOG0289|consen  272 DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT  351 (506)
T ss_pred             chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence            9999999999999999999988888889999999999999999999999999999999999999887766532  24589


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCC
Q 005277          510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT  589 (704)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~  589 (704)
                      +.+|||||.+|.+|+.||.|++||+.++..+..|.+|.++|..++|+.+|.||+++++|+.|++||++..+...++.-..
T Consensus       352 s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~  431 (506)
T KOG0289|consen  352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE  431 (506)
T ss_pred             EeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888777775433


Q ss_pred             -ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcc
Q 005277          590 -SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTN  668 (704)
Q Consensus       590 -~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~  668 (704)
                       ..+.++.|                                  .+.|.+|+.+|.|=.|++++-.+             .
T Consensus       432 ~~~v~s~~f----------------------------------D~SGt~L~~~g~~l~Vy~~~k~~-------------k  464 (506)
T KOG0289|consen  432 KKEVNSLSF----------------------------------DQSGTYLGIAGSDLQVYICKKKT-------------K  464 (506)
T ss_pred             cccceeEEE----------------------------------cCCCCeEEeecceeEEEEEeccc-------------c
Confidence             46888888                                  89999999998776666665333             2


Q ss_pred             ccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          669 RLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       669 ~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      .+..+..+..|.+..+++.|....+++++++.|.+
T Consensus       465 ~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~  499 (506)
T KOG0289|consen  465 SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI  499 (506)
T ss_pred             cceeeehhhhcccccceeeecccceEEeeccchhh
Confidence            35678888888899999999999999999998753

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.5e-28  Score=269.30  Aligned_cols=259  Identities=18%  Similarity=0.282  Sum_probs=204.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      ...|.....++|+..+++++.+.....|+......  +...  ..           ..........+.+|.++|++++|+
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~--v~~~--~~-----------~G~~~~~~~~l~GH~~~V~~v~fs   84 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA--VLKH--TD-----------YGKLASNPPILLGQEGPIIDVAFN   84 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCceE--Eeec--cc-----------cccCCCCCceEeCCCCCEEEEEEc
Confidence            34567777888877788888888888898654221  1000  00           000011223467999999999999


Q ss_pred             C-CCCEEEEEeCCCeEEEEeCCCC-------ceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          431 P-LGDFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       431 p-~~~~l~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      | ++++|++|+.||+|++||+.++       ..+..+.+|...|.+++|+|++ ++|++|+.|++|++||+++++.+..+
T Consensus        85 P~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l  164 (493)
T PTZ00421         85 PFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI  164 (493)
T ss_pred             CCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE
Confidence            9 7889999999999999999765       3467788999999999999975 79999999999999999999999999


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCC-EEEEEEecCCCEEEEEe----CCCeEEEEeC
Q 005277          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGD----EDGTIMMWDL  576 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-i~~l~~spdg~~l~sg~----~dg~I~iwdl  576 (704)
                      .+|...|.+++|+|++++|++|+.|++|++||+++++.+..+.+|.+. +..+.|.+++..+++++    .|+.|++||+
T Consensus       165 ~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl  244 (493)
T PTZ00421        165 KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT  244 (493)
T ss_pred             cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence            999999999999999999999999999999999999999999888764 45778999888777654    4789999999


Q ss_pred             CCCe-eeeeecCCC-ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCcEEEEeCC
Q 005277          577 ASGR-CVTPLMGHT-SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCTVKLWDVT  653 (704)
Q Consensus       577 ~~~~-~~~~~~~h~-~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~  653 (704)
                      ++.. ++.....+. ..+....|                                  ++++++|++|+ .||.|++||+.
T Consensus       245 r~~~~p~~~~~~d~~~~~~~~~~----------------------------------d~d~~~L~lggkgDg~Iriwdl~  290 (493)
T PTZ00421        245 RKMASPYSTVDLDQSSALFIPFF----------------------------------DEDTNLLYIGSKGEGNIRCFELM  290 (493)
T ss_pred             CCCCCceeEeccCCCCceEEEEE----------------------------------cCCCCEEEEEEeCCCeEEEEEee
Confidence            8754 333333232 23333444                                  88999998887 59999999999


Q ss_pred             CCccc
Q 005277          654 TSTKV  658 (704)
Q Consensus       654 ~~~~~  658 (704)
                      ++...
T Consensus       291 ~~~~~  295 (493)
T PTZ00421        291 NERLT  295 (493)
T ss_pred             CCceE
Confidence            87643

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=5.4e-29  Score=251.14  Aligned_cols=300  Identities=23%  Similarity=0.397  Sum_probs=242.8

Q ss_pred             eEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277          342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (704)
Q Consensus       342 ~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (704)
                      ..+.....|+-+|+|++++||.++..+++.+|+|.-|++.+.....-         ..+................ .+|.
T Consensus       133 ~~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~---------i~~~~ev~k~~~~~~k~~r-~~h~  202 (479)
T KOG0299|consen  133 SDFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRY---------IIERDEVLKSHGNPLKESR-KGHV  202 (479)
T ss_pred             ccceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCccccc---------ccccchhhhhccCCCCccc-cccc
Confidence            33566778999999999999999999999999999999876432100         0000000000000111111 4899


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      ..|.+++.++||+||++|+.|..|.||+.++.+.+..+++|.+.|.+++|-...+.+++++.|+++++|+++....+.++
T Consensus       203 keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl  282 (479)
T KOG0299|consen  203 KEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL  282 (479)
T ss_pred             ceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988889999999999999999999999999


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~  581 (704)
                      .+|.+.|..+.-..-++.+.+|+.|+++++|++. ......|.+|.+.+-|++|- +...+++|+.+|.|.+|++.+.++
T Consensus       283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkp  360 (479)
T KOG0299|consen  283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKP  360 (479)
T ss_pred             hCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCc
Confidence            9999999999988888888899999999999994 34445688999999999998 456789999999999999999988


Q ss_pred             eeeec-CCC---c--------eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          582 VTPLM-GHT---S--------CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       582 ~~~~~-~h~---~--------~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                      +.+.. +|.   .        .|++++.                                  .|..+++|+|+.+|.|++
T Consensus       361 lf~~~~AHgv~~~~~~~~~~~Witsla~----------------------------------i~~sdL~asGS~~G~vrL  406 (479)
T KOG0299|consen  361 LFTSRLAHGVIPELDPVNGNFWITSLAV----------------------------------IPGSDLLASGSWSGCVRL  406 (479)
T ss_pred             eeEeeccccccCCccccccccceeeeEe----------------------------------cccCceEEecCCCCceEE
Confidence            87764 332   0        2333333                                  788899999999999999


Q ss_pred             EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                      |.+..+-.           .+.++..++ ..+-|++++|+++|..+++|.
T Consensus       407 W~i~~g~r-----------~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  407 WKIEDGLR-----------AINLLYSLS-LVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             EEecCCcc-----------ccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence            99988743           234556665 678899999999999777764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=8.8e-29  Score=233.41  Aligned_cols=291  Identities=19%  Similarity=0.259  Sum_probs=240.6

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      .+.+|..+++-+.++.+|.+|.+++.|.++.||-...                            +...-.+.||++.|.
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n----------------------------GerlGty~GHtGavW   56 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN----------------------------GERLGTYDGHTGAVW   56 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecC----------------------------CceeeeecCCCceEE
Confidence            3678999999999999999999999999999997533                            345667899999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-----CCCeEEEEECC-------
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-----HDRTARIWSMD-------  493 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-----~dg~i~lwd~~-------  493 (704)
                      |+...-+.+++++|+.|.++++||+.+|+++..++ ...+|+.+.|+++|++++.+.     ..+.|.++|++       
T Consensus        57 ~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~  135 (327)
T KOG0643|consen   57 CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID  135 (327)
T ss_pred             EEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc
Confidence            99999999999999999999999999999999988 567999999999999888775     45789999998       


Q ss_pred             CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (704)
Q Consensus       494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~  572 (704)
                      ..+|...+..+.+.++.+-|.|-+.+|++|..||.|.+||+++|. .+..-..|...|+.|+++||..++++++.|.+-+
T Consensus       136 s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttak  215 (327)
T KOG0643|consen  136 SEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAK  215 (327)
T ss_pred             ccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccce
Confidence            456778888888999999999999999999999999999999984 4555578999999999999999999999999999


Q ss_pred             EEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277          573 MWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV  652 (704)
Q Consensus       573 iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~  652 (704)
                      +||..+-..++++. -..+|.+.++                                  +|-...++.||.....-|=-.
T Consensus       216 l~D~~tl~v~Kty~-te~PvN~aai----------------------------------sP~~d~VilgGGqeA~dVTTT  260 (327)
T KOG0643|consen  216 LVDVRTLEVLKTYT-TERPVNTAAI----------------------------------SPLLDHVILGGGQEAMDVTTT  260 (327)
T ss_pred             eeeccceeeEEEee-ecccccceec----------------------------------ccccceEEecCCceeeeeeee
Confidence            99999998888876 3457777777                                  888888877765432222111


Q ss_pred             --CCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          653 --TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       653 --~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                        +.++-...+.+   ...-..+..+.+|-+||++|+|+|+|+..++|+.||.
T Consensus       261 ~~r~GKFEArFyh---~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~  310 (327)
T KOG0643|consen  261 STRAGKFEARFYH---LIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY  310 (327)
T ss_pred             cccccchhhhHHH---HHHHHHhccccccccCcceeEECCCCcccccCCCCce
Confidence              11111000000   0011346778999999999999999999999999984

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=4.2e-30  Score=239.88  Aligned_cols=279  Identities=23%  Similarity=0.356  Sum_probs=240.9

Q ss_pred             EEEeeCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277          345 YTFINTHNGLNCASISQ---DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~---dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (704)
                      .+..+|..+|..++|||   +|-+|++++.||.-.+-+=+                            ....+-.+.||.
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~----------------------------tgdwigtfeghk   59 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGD----------------------------TGDWIGTFEGHK   59 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCC----------------------------CCCcEEeeeccC
Confidence            35689999999999985   89999999998865443322                            245667889999


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEE
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-PLRI  500 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~-~~~~  500 (704)
                      +.|.+.....+...-++++.|-+-++||.-++..+..+. |..-|..++|+.|.+++++|+.+..+|+||++..+ +...
T Consensus        60 gavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E  138 (334)
T KOG0278|consen   60 GAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE  138 (334)
T ss_pred             cceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchh
Confidence            999999999888888899999999999999999999887 88899999999999999999999999999998754 5677


Q ss_pred             eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      +.+|.+.|..+.|....+.|++.+.|++||+||.+++..+..+. ...+|+++.++++|++|.++. .+.|.+||..+..
T Consensus       139 ~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~  216 (334)
T KOG0278|consen  139 ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFG  216 (334)
T ss_pred             hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEecccccc
Confidence            88999999999999999999999999999999999999998885 567899999999999887654 5679999999988


Q ss_pred             eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277          581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK  660 (704)
Q Consensus       581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~  660 (704)
                      +++.+... ..|.+.+.                                  +|+..++++|+.|+.++.||+.++..+..
T Consensus       217 ~lKs~k~P-~nV~SASL----------------------------------~P~k~~fVaGged~~~~kfDy~TgeEi~~  261 (334)
T KOG0278|consen  217 LLKSYKMP-CNVESASL----------------------------------HPKKEFFVAGGEDFKVYKFDYNTGEEIGS  261 (334)
T ss_pred             ceeeccCc-cccccccc----------------------------------cCCCceEEecCcceEEEEEeccCCceeee
Confidence            88776532 34555555                                  89999999999999999999999875311


Q ss_pred             cccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          661 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       661 ~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                    ...+|.+||.||.|+|+|.+.|+||.|||
T Consensus       262 --------------~nkgh~gpVhcVrFSPdGE~yAsGSEDGT  290 (334)
T KOG0278|consen  262 --------------YNKGHFGPVHCVRFSPDGELYASGSEDGT  290 (334)
T ss_pred             --------------cccCCCCceEEEEECCCCceeeccCCCce
Confidence                          24789999999999999999999999997

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=3.5e-29  Score=240.21  Aligned_cols=303  Identities=22%  Similarity=0.363  Sum_probs=240.0

Q ss_pred             CeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC-CCCCccceeeccC
Q 005277          341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG-PNGRKRSYTLYQG  419 (704)
Q Consensus       341 ~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  419 (704)
                      ...-..+..|.+.+.|.+||+||.++|+|+.|..|+|.|+..+-.....           .+...+ .......++.+..
T Consensus       102 ~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~-----------~em~~~~~qa~hPvIRTlYD  170 (430)
T KOG0640|consen  102 EYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKP-----------KEMISGDTQARHPVIRTLYD  170 (430)
T ss_pred             ccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcch-----------hhhccCCcccCCceEeehhh
Confidence            3444457789999999999999999999999999999998742111100           000001 1122467889999


Q ss_pred             CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~  497 (704)
                      |..+|+++.|+|....|++|+.|++|+++|.......+.++  ....+|.++.|+|.|.++++|..-.++++||+++.++
T Consensus       171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc  250 (430)
T KOG0640|consen  171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC  250 (430)
T ss_pred             ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE
Confidence            99999999999999999999999999999997544333222  2467899999999999999999999999999998776


Q ss_pred             eEEe---ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-cCC-CCEEEEEEecCCCEEEEEeCCCeEE
Q 005277          498 LRIM---AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHR-SMILSLAMSPDGRYMASGDEDGTIM  572 (704)
Q Consensus       498 ~~~~---~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~-~~i~~l~~spdg~~l~sg~~dg~I~  572 (704)
                      ...-   .+|.+.|+++.+++.+++.++|+.||.|++||--+++|++++. .|. ..|.+..|+.+|+++.+.|.|..++
T Consensus       251 fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vk  330 (430)
T KOG0640|consen  251 FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVK  330 (430)
T ss_pred             eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceee
Confidence            5443   3688999999999999999999999999999999999999885 454 4799999999999999999999999


Q ss_pred             EEeCCCCeeeeeecCCC--ce---eeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCc
Q 005277          573 MWDLASGRCVTPLMGHT--SC---VWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCT  646 (704)
Q Consensus       573 iwdl~~~~~~~~~~~h~--~~---V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~  646 (704)
                      +|.+.+++++..+.|-.  +.   -+...|                                  +....+++.-. ..+.
T Consensus       331 LWEi~t~R~l~~YtGAg~tgrq~~rtqAvF----------------------------------NhtEdyVl~pDEas~s  376 (430)
T KOG0640|consen  331 LWEISTGRMLKEYTGAGTTGRQKHRTQAVF----------------------------------NHTEDYVLFPDEASNS  376 (430)
T ss_pred             eeeecCCceEEEEecCCcccchhhhhhhhh----------------------------------cCccceEEccccccCc
Confidence            99999999999887642  11   111122                                  44444554443 4678


Q ss_pred             EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       647 V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      +.-||..+.....              ..--+|++++..+.-||.+..+.+|+.|-
T Consensus       377 lcsWdaRtadr~~--------------l~slgHn~a~R~i~HSP~~p~FmTcsdD~  418 (430)
T KOG0640|consen  377 LCSWDARTADRVA--------------LLSLGHNGAVRWIVHSPVEPAFMTCSDDF  418 (430)
T ss_pred             eeeccccchhhhh--------------hcccCCCCCceEEEeCCCCCceeeecccc
Confidence            9999999876531              12237899999999999999999999874

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=2.8e-30  Score=256.85  Aligned_cols=290  Identities=23%  Similarity=0.326  Sum_probs=245.4

Q ss_pred             CCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceee
Q 005277          337 AALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL  416 (704)
Q Consensus       337 ~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (704)
                      ..+|+.+.+.+.-|.+.+..+.|-++...|++|+.|..|++|++...+                          ......
T Consensus       161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--------------------------~~~~~t  214 (459)
T KOG0288|consen  161 DTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--------------------------SELIST  214 (459)
T ss_pred             cccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch--------------------------hhhhhh
Confidence            467888888888999999999999999999999999999999987522                          224456


Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~  496 (704)
                      +.|..++|+++.|.+++.++++++.|+.+++|+++..+...++.+|...|+++.|......+++|+.|.++++||+....
T Consensus       215 LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~  294 (459)
T KOG0288|consen  215 LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY  294 (459)
T ss_pred             hhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh
Confidence            77888999999999999999999999999999999999999999999999999999877779999999999999999987


Q ss_pred             eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                      +.+.+. ..+.+..|...  ...+++|-.|++||+||+++..+++....+. .|+++..+++|..|.+++.|.++.+.|+
T Consensus       295 C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDl  370 (459)
T KOG0288|consen  295 CSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDL  370 (459)
T ss_pred             eecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeec
Confidence            777655 23455556554  5678899999999999999999999887665 8999999999999999999999999999


Q ss_pred             CCCeeeeeecCCC----ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277          577 ASGRCVTPLMGHT----SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV  652 (704)
Q Consensus       577 ~~~~~~~~~~~h~----~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~  652 (704)
                      ++......+.+..    ...+.+.|                                  ||++.|+++||.||.|+||++
T Consensus       371 Rt~eI~~~~sA~g~k~asDwtrvvf----------------------------------Spd~~YvaAGS~dgsv~iW~v  416 (459)
T KOG0288|consen  371 RTKEIRQTFSAEGFKCASDWTRVVF----------------------------------SPDGSYVAAGSADGSVYIWSV  416 (459)
T ss_pred             ccccEEEEeeccccccccccceeEE----------------------------------CCCCceeeeccCCCcEEEEEc
Confidence            9988877775422    12333444                                  999999999999999999999


Q ss_pred             CCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          653 TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      .+++...             +...++....|+++.|+|.|..|++++.++.
T Consensus       417 ~tgKlE~-------------~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~  454 (459)
T KOG0288|consen  417 FTGKLEK-------------VLSLSTSNAAITSLSWNPSGSGLLSADKQKA  454 (459)
T ss_pred             cCceEEE-------------EeccCCCCcceEEEEEcCCCchhhcccCCcc
Confidence            9986532             2233333446999999999999999887764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=5.7e-28  Score=234.20  Aligned_cols=275  Identities=23%  Similarity=0.355  Sum_probs=229.4

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      |....+.|+++.|+++|.+|++++.|-+++|||...                            .........+.-.|..
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~----------------------------g~~~~ti~skkyG~~~   61 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS----------------------------GKQVKTINSKKYGVDL   61 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC----------------------------CceeeEeecccccccE
Confidence            344678899999999999999999999999999876                            2344455556667888


Q ss_pred             EEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277          427 ASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       427 l~~sp~~~~l~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      ++|......++.++.  |.+||..++.+.+.++.+.||...|.+++.+|-+..|++++.|++|++||++..++...+...
T Consensus        62 ~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~  141 (311)
T KOG1446|consen   62 ACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS  141 (311)
T ss_pred             EEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC
Confidence            889777777776665  889999999999999999999999999999999999999999999999999987777666533


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--cEEEEee---cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFI---GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~---~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~  579 (704)
                        .-..++|.|.|-++|++.....|++||+|.-  .+..+|.   +.....+.|.|||||++|+.+...+.+++.|.-+|
T Consensus       142 --~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G  219 (311)
T KOG1446|consen  142 --GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG  219 (311)
T ss_pred             --CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence              3345789999999999988889999999853  3444443   33567899999999999999999999999999999


Q ss_pred             eeeeeecCCCcee---eeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          580 RCVTPLMGHTSCV---WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       580 ~~~~~~~~h~~~V---~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                      ..+.++.++...-   -+..|                                  +||++++++|+.||+|++|+++++.
T Consensus       220 ~~~~tfs~~~~~~~~~~~a~f----------------------------------tPds~Fvl~gs~dg~i~vw~~~tg~  265 (311)
T KOG1446|consen  220 TVKSTFSGYPNAGNLPLSATF----------------------------------TPDSKFVLSGSDDGTIHVWNLETGK  265 (311)
T ss_pred             cEeeeEeeccCCCCcceeEEE----------------------------------CCCCcEEEEecCCCcEEEEEcCCCc
Confidence            9888887765322   22333                                  9999999999999999999999887


Q ss_pred             cccccccccCccccccccccCC-CCcCeEEEEEccCCcEEEEeec
Q 005277          657 KVLKTEEKSGTNRLRSLKTLPT-KSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       657 ~~~~~~~~~~~~~~~~l~~~~~-~~~~V~~l~fs~~g~~La~gs~  700 (704)
                      ++               ..+.+ +.+++.++.|+|.-..+|+++.
T Consensus       266 ~v---------------~~~~~~~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  266 KV---------------AVLRGPNGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             Ee---------------eEecCCCCCCccccccCCceeeeeecCc
Confidence            64               23333 6789999999999999998875

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.4e-29  Score=253.03  Aligned_cols=275  Identities=24%  Similarity=0.370  Sum_probs=229.1

Q ss_pred             eeCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          348 INTHNGLNCASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~-lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      ..-++.|++++|||...+ +|+. ..-.|.||+..+.                            .....+......|++
T Consensus        23 ~ke~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~----------------------------~~~k~~srFk~~v~s   73 (487)
T KOG0310|consen   23 HKEHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTR----------------------------SVRKTFSRFKDVVYS   73 (487)
T ss_pred             ccccCcceeEecCCCCCCceEEe-cccEEEEEecchh----------------------------hhhhhHHhhccceeE
Confidence            455678999999996433 3433 3567899987652                            122333445678999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCC
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~  505 (704)
                      +.|-.||++|++|...|.|+++|+.+...+..+.+|..||..+.|+| ++..|++|+.|+.+++||+.+......+.+|.
T Consensus        74 ~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht  153 (487)
T KOG0310|consen   74 VDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT  153 (487)
T ss_pred             EEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc
Confidence            99999999999999999999999877677888999999999999999 56678899999999999999988766788999


Q ss_pred             CCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCC-cEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC-eee
Q 005277          506 SDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCV  582 (704)
Q Consensus       506 ~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~-~~~  582 (704)
                      +.|.|.+|+|- +.++++|+.||+|++||+++. ..+..+ .|..+|..+.+-|.|..+++++.. .|++||+.+| +.+
T Consensus       154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLL  231 (487)
T ss_pred             ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceeh
Confidence            99999999995 568899999999999999987 555555 699999999999999999998764 7999999965 455


Q ss_pred             eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccc
Q 005277          583 TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE  662 (704)
Q Consensus       583 ~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~  662 (704)
                      ..+..|...|+|+.+                                  ..++..|++||-||.|++||+.+-+.+    
T Consensus       232 ~~~~~H~KtVTcL~l----------------------------------~s~~~rLlS~sLD~~VKVfd~t~~Kvv----  273 (487)
T KOG0310|consen  232 TSMFNHNKTVTCLRL----------------------------------ASDSTRLLSGSLDRHVKVFDTTNYKVV----  273 (487)
T ss_pred             hhhhcccceEEEEEe----------------------------------ecCCceEeecccccceEEEEccceEEE----
Confidence            555569999999999                                  778899999999999999997765432    


Q ss_pred             cccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       663 ~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                 ..+ ...+||.+++.+|++..++.|..+|.
T Consensus       274 -----------~s~-~~~~pvLsiavs~dd~t~viGmsnGl  302 (487)
T KOG0310|consen  274 -----------HSW-KYPGPVLSIAVSPDDQTVVIGMSNGL  302 (487)
T ss_pred             -----------Eee-ecccceeeEEecCCCceEEEecccce
Confidence                       222 45789999999999999999999884

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.3e-28  Score=264.35  Aligned_cols=239  Identities=25%  Similarity=0.430  Sum_probs=211.5

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      ..+++|+-... .+.-.|..|.++|..++|+|.+.++++|+.|-.|+||+.+.                           
T Consensus        31 G~IQlWDYRM~-tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~---------------------------   82 (1202)
T KOG0292|consen   31 GVIQLWDYRMG-TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT---------------------------   82 (1202)
T ss_pred             ceeeeehhhhh-hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc---------------------------
Confidence            45666654332 23345789999999999999999999999999999999876                           


Q ss_pred             CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEE
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI  489 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~l  489 (704)
                       .++..++.||-.-|..+.|++.-.+++|+|.|.||+||++.+.+++..+.||+..|.|.+|+|....++++|-|.+||+
T Consensus        83 -rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV  161 (1202)
T KOG0292|consen   83 -RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV  161 (1202)
T ss_pred             -ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence             5677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCc-----------------------------eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc--
Q 005277          490 WSMDRIQ-----------------------------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE--  538 (704)
Q Consensus       490 wd~~~~~-----------------------------~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~--  538 (704)
                      ||+...+                             ....+.||...|+-++|||.-..|++|+.|+.|++|.+..-+  
T Consensus       162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW  241 (1202)
T KOG0292|consen  162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW  241 (1202)
T ss_pred             EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence            9985210                             113467999999999999999999999999999999987544  


Q ss_pred             EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277          539 CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       539 ~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      .+-++.+|.+.|+++-|+|....+++.|+|++|+|||+...+.+.+++.-.+..|.++.
T Consensus       242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laa  300 (1202)
T KOG0292|consen  242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAA  300 (1202)
T ss_pred             eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEe
Confidence            35567899999999999999999999999999999999999999999877788888877

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.1e-27  Score=263.54  Aligned_cols=247  Identities=19%  Similarity=0.331  Sum_probs=194.4

Q ss_pred             EeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC-CCEEEEEeCCCeEEE
Q 005277          369 GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRL  447 (704)
Q Consensus       369 g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~Dg~I~l  447 (704)
                      |+.+|.|++|+...                            ......+.+|.++|.+++|+|+ +.+|++|+.||+|++
T Consensus        50 GG~~gvI~L~~~~r----------------------------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrI  101 (568)
T PTZ00420         50 GGLIGAIRLENQMR----------------------------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRV  101 (568)
T ss_pred             CCceeEEEeeecCC----------------------------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEE
Confidence            66788899998653                            2345667899999999999997 789999999999999


Q ss_pred             EeCCCCc--------eeEEeecCCcCeeEEEEcCCCCE-EEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCC
Q 005277          448 WSTKLNA--------NLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN  518 (704)
Q Consensus       448 wd~~~~~--------~~~~~~~h~~~V~~v~~sp~~~~-l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~  518 (704)
                      ||+.++.        .+..+.+|...|.+++|+|++.. +++++.|++|++||+++++.+..+. |...|.+++|+|+|.
T Consensus       102 WDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~  180 (568)
T PTZ00420        102 WEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN  180 (568)
T ss_pred             EECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC
Confidence            9997642        34467889999999999998876 5789999999999999988777665 567899999999999


Q ss_pred             EEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEE-----EEecCCCEEEEEeCCC----eEEEEeCCC-CeeeeeecCC
Q 005277          519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL-----AMSPDGRYMASGDEDG----TIMMWDLAS-GRCVTPLMGH  588 (704)
Q Consensus       519 ~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l-----~~spdg~~l~sg~~dg----~I~iwdl~~-~~~~~~~~~h  588 (704)
                      +|++++.|+.|++||+++++.+..+.+|.+.+.+.     .|++++.+|++++.|+    .|+|||+++ ++++..+..+
T Consensus       181 lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld  260 (568)
T PTZ00420        181 LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID  260 (568)
T ss_pred             EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec
Confidence            99999999999999999999999999998865443     3458889999988774    799999995 5555544322


Q ss_pred             --CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccC
Q 005277          589 --TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG  666 (704)
Q Consensus       589 --~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~  666 (704)
                        .+.+.....                                  .++|.++++|+.|++|++|++..+..         
T Consensus       261 ~~~~~L~p~~D----------------------------------~~tg~l~lsGkGD~tIr~~e~~~~~~---------  297 (568)
T PTZ00420        261 NASAPLIPHYD----------------------------------ESTGLIYLIGKGDGNCRYYQHSLGSI---------  297 (568)
T ss_pred             CCccceEEeee----------------------------------CCCCCEEEEEECCCeEEEEEccCCcE---------
Confidence              222222222                                  56688999999999999999976531         


Q ss_pred             ccccccccccCCCCcCeEEEEEccCC
Q 005277          667 TNRLRSLKTLPTKSTPVYSLQFSRRN  692 (704)
Q Consensus       667 ~~~~~~l~~~~~~~~~V~~l~fs~~g  692 (704)
                          ..+..+. +..|+.+++|.|..
T Consensus       298 ----~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        298 ----RKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             ----Eeecccc-cCCCccceEEcccc
Confidence                1233332 55677777777754

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=1.7e-28  Score=235.34  Aligned_cols=262  Identities=24%  Similarity=0.409  Sum_probs=234.2

Q ss_pred             hccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277          327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (704)
Q Consensus       327 ~~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (704)
                      .....+.+|.....--.+.++.+|.+.|..+.|.+|++.|++++.|.+|+.||+.+                        
T Consensus        66 G~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t------------------------  121 (338)
T KOG0265|consen   66 GSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET------------------------  121 (338)
T ss_pred             CCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc------------------------
Confidence            34567888887666666778889999999999999999999999999999999987                        


Q ss_pred             CCCCccceeeccCCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277          407 PNGRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (704)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg  485 (704)
                          ++..+.+++|.+-|+++.-+.-|. ++.|++.||++++||+++..+++++. ...+++++.|...+..+.+|+-|+
T Consensus       122 ----G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  122 ----GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             ----ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccC
Confidence                456677889999999999655555 45589999999999999888888775 467899999999999999999999


Q ss_pred             eEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC----CcEEEEeecCCC----CEEEEEEec
Q 005277          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS----GECVRIFIGHRS----MILSLAMSP  557 (704)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~----~~~~~~~~~h~~----~i~~l~~sp  557 (704)
                      .|++||++......++.||.+.|+.+..+|+|.++.+-+.|.++++||++.    .+++..+.+|..    ....++|+|
T Consensus       197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp  276 (338)
T KOG0265|consen  197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP  276 (338)
T ss_pred             ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence            999999999999999999999999999999999999999999999999984    456888887653    456789999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277          558 DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL  637 (704)
Q Consensus       558 dg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  637 (704)
                      ++..+.+|+.|..+++||..+...+..+.||.+.|.+++|                                  +|...+
T Consensus       277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~F----------------------------------hp~e~i  322 (338)
T KOG0265|consen  277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDF----------------------------------HPTEPI  322 (338)
T ss_pred             CCCccccccccceEEEeecccccEEEEcCCcceeEEEeee----------------------------------cCCCcE
Confidence            9999999999999999999988999999999999999999                                  999999


Q ss_pred             EEEEeCCCcEEEEe
Q 005277          638 LASGSADCTVKLWD  651 (704)
Q Consensus       638 lasgs~Dg~V~iWd  651 (704)
                      |.+++.|.+|.+=.
T Consensus       323 ils~~sdk~i~lge  336 (338)
T KOG0265|consen  323 ILSCSSDKTIYLGE  336 (338)
T ss_pred             EEEeccCceeEeec
Confidence            99999999998743

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=2.3e-28  Score=268.00  Aligned_cols=266  Identities=29%  Similarity=0.523  Sum_probs=234.1

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceee-ccCCccCeEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL-YQGHSGPVYSAS  428 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~  428 (704)
                      +...+.|..|.  ..++++|+.|++|++|+...                            ...+.. +.||.+.|.+++
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~----------------------------~~~i~~~l~GH~g~V~~l~  256 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN----------------------------GYLILTRLVGHFGGVWGLA  256 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeeccc----------------------------ceEEEeeccCCCCCceeEE
Confidence            56679999998  56799999999999999765                            234444 899999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCe
Q 005277          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV  508 (704)
Q Consensus       429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V  508 (704)
                      +..-+.+|++|+.|.++++||..++.+...+.+|...|.++...  +.++++|+.|.+|++|++.++..+..+.+|..+|
T Consensus       257 ~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V  334 (537)
T KOG0274|consen  257 FPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPV  334 (537)
T ss_pred             EecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccE
Confidence            99878899999999999999999999999999999999998874  5678889999999999999999999999999999


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC-eeeeeecC
Q 005277          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMG  587 (704)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~-~~~~~~~~  587 (704)
                      .++..+  +.++++|+.|++|++||+.+++++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +++.++.+
T Consensus       335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~  411 (537)
T KOG0274|consen  335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG  411 (537)
T ss_pred             EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC
Confidence            999987  889999999999999999999999999999999999988654 89999999999999999999 99999999


Q ss_pred             CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCc
Q 005277          588 HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT  667 (704)
Q Consensus       588 h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~  667 (704)
                      |...+..+.+                                    .+++|++++.||+|++||...++..         
T Consensus       412 h~~~v~~l~~------------------------------------~~~~Lvs~~aD~~Ik~WD~~~~~~~---------  446 (537)
T KOG0274|consen  412 HTSLVSSLLL------------------------------------RDNFLVSSSADGTIKLWDAEEGECL---------  446 (537)
T ss_pred             Cccccccccc------------------------------------ccceeEeccccccEEEeecccCcee---------
Confidence            9998876644                                    6789999999999999999988653         


Q ss_pred             cccccccccCC-CCcCeEEEEEccCCcEEEEeecCCC
Q 005277          668 NRLRSLKTLPT-KSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       668 ~~~~~l~~~~~-~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                            ..+.+ +...|..+++.  ...+++++.+|+
T Consensus       447 ------~~~~~~~~~~v~~l~~~--~~~il~s~~~~~  475 (537)
T KOG0274|consen  447 ------RTLEGRHVGGVSALALG--KEEILCSSDDGS  475 (537)
T ss_pred             ------eeeccCCcccEEEeecC--cceEEEEecCCe
Confidence                  34444 56778888776  445666666654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=8.9e-28  Score=283.29  Aligned_cols=240  Identities=23%  Similarity=0.378  Sum_probs=207.2

Q ss_pred             eCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          349 NTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       349 ~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      .+...|.+++|++. +.+||+|+.||.|+|||+.+                            ......+.+|.+.|+++
T Consensus       530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~----------------------------~~~~~~~~~H~~~V~~l  581 (793)
T PLN00181        530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR----------------------------SQLVTEMKEHEKRVWSI  581 (793)
T ss_pred             cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC----------------------------CeEEEEecCCCCCEEEE
Confidence            34568999999874 88999999999999999875                            23456678899999999


Q ss_pred             EEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEc-CCCCEEEEEeCCCeEEEEECCCCc-eeEEeccC
Q 005277          428 SFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN-PQGHYFASSSHDRTARIWSMDRIQ-PLRIMAGH  504 (704)
Q Consensus       428 ~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~s-p~~~~l~sgs~dg~i~lwd~~~~~-~~~~~~~~  504 (704)
                      +|+| ++.+|++|+.||+|++||+.++..+..+..+ ..|.++.|+ +++.+|++|+.||.|++||+++.. ++..+.+|
T Consensus       582 ~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h  660 (793)
T PLN00181        582 DYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH  660 (793)
T ss_pred             EEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC
Confidence            9997 7889999999999999999999888888755 689999995 479999999999999999998765 56778899


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC------CcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~------~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                      ...|.++.|. ++.+|++++.|++|++||++.      ..++..+.+|...+.+++|+|++.+|++|+.||.|++|+...
T Consensus       661 ~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~  739 (793)
T PLN00181        661 SKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF  739 (793)
T ss_pred             CCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence            9999999997 788999999999999999974      357888999999999999999999999999999999999876


Q ss_pred             Ceeeeee-------------cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277          579 GRCVTPL-------------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC  645 (704)
Q Consensus       579 ~~~~~~~-------------~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg  645 (704)
                      ..++..+             ..|...|.++.|                                  ++++..|++|+.||
T Consensus       740 ~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~w----------------------------------s~~~~~lva~~~dG  785 (793)
T PLN00181        740 PMPVLSYKFKTIDPVSGLEVDDASQFISSVCW----------------------------------RGQSSTLVAANSTG  785 (793)
T ss_pred             CCceEEEecccCCcccccccCCCCcEEEEEEE----------------------------------cCCCCeEEEecCCC
Confidence            6444222             223455777777                                  99999999999999


Q ss_pred             cEEEEeC
Q 005277          646 TVKLWDV  652 (704)
Q Consensus       646 ~V~iWd~  652 (704)
                      .|+||++
T Consensus       786 ~I~i~~~  792 (793)
T PLN00181        786 NIKILEM  792 (793)
T ss_pred             cEEEEec
Confidence            9999996

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.2e-27  Score=217.35  Aligned_cols=305  Identities=21%  Similarity=0.358  Sum_probs=244.4

Q ss_pred             CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC
Q 005277          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (704)
Q Consensus       340 p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (704)
                      |.....+.+.-.+.|.+++|+|.|.+.|+|+...+.+|-..........  ..+.  ..         ....-..+..+.
T Consensus        21 ~~f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~--~hea--~~---------~pp~v~~kr~kh   87 (350)
T KOG0641|consen   21 KHFEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH--AHEA--AK---------QPPSVLCKRNKH   87 (350)
T ss_pred             cceEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCccc--cccc--cc---------CCCeEEeeeccc
Confidence            4445556677788999999999999999999999999986543211100  0000  00         001123455677


Q ss_pred             CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-----eEEeecCCcCeeEEEEcC----CCCEEEEEe-CCCeEEE
Q 005277          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-----LVCYKGHNYPVWDVQFNP----QGHYFASSS-HDRTARI  489 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~-----~~~~~~h~~~V~~v~~sp----~~~~l~sgs-~dg~i~l  489 (704)
                      |.+.|+|.+|+|+|++|++|+.|.+|++.-.+...+     -..+..|.+.|.+++|-.    .+..+++++ .|..|++
T Consensus        88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~  167 (350)
T KOG0641|consen   88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI  167 (350)
T ss_pred             cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence            999999999999999999999999999987664433     245677999999999965    356777765 5778888


Q ss_pred             EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec--C-----CCCEEEEEEecCCCEE
Q 005277          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--H-----RSMILSLAMSPDGRYM  562 (704)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h-----~~~i~~l~~spdg~~l  562 (704)
                      -|..+++....+.+|.+.|.++- +=++-.+++|+.|.+|++||++-..+++++..  |     ...|.+++..|.|++|
T Consensus       168 tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll  246 (350)
T KOG0641|consen  168 TDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL  246 (350)
T ss_pred             eecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCccee
Confidence            89999999999999999998762 34678999999999999999999999887642  2     2579999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe
Q 005277          563 ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS  642 (704)
Q Consensus       563 ~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs  642 (704)
                      ++|..|....+||++.++.++.+..|+..|.++.|                                  ||...++.+|+
T Consensus       247 ~sg~~dssc~lydirg~r~iq~f~phsadir~vrf----------------------------------sp~a~yllt~s  292 (350)
T KOG0641|consen  247 ASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRF----------------------------------SPGAHYLLTCS  292 (350)
T ss_pred             eeccCCCceEEEEeeCCceeeeeCCCccceeEEEe----------------------------------CCCceEEEEec
Confidence            99999999999999999999999999999999999                                  99999999999


Q ss_pred             CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          643 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       643 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      .|..|++-|+...-.-           .-++.....|...+..+.|+|...-+.+.+.|+|
T Consensus       293 yd~~ikltdlqgdla~-----------el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt  342 (350)
T KOG0641|consen  293 YDMKIKLTDLQGDLAH-----------ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT  342 (350)
T ss_pred             ccceEEEeecccchhh-----------cCceEEEEeccCceEEEEecCccceeeeccCcce
Confidence            9999999998753210           0123345567888889999999999999998876

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.3e-28  Score=230.66  Aligned_cols=235  Identities=27%  Similarity=0.422  Sum_probs=204.8

Q ss_pred             CccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCC-CceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCc
Q 005277          420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ  496 (704)
Q Consensus       420 h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~  496 (704)
                      -...++.++|+++.. .+++++.||++++||+.. ..++..++.|...|.++.|++ .+..++++|.|++|++|+...++
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            457899999999764 677999999999999653 357888999999999999999 66778999999999999999999


Q ss_pred             eeEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEec-CCCEEEEEeCCCeEEE
Q 005277          497 PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMM  573 (704)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~sp-dg~~l~sg~~dg~I~i  573 (704)
                      .++++.+|.+.|....|+| .++.++++|.|+++++||++. |+.+. +..|...|.|+.|+. +.+.|++|+.|+.|++
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~  217 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRG  217 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEE
Confidence            9999999999999999999 578999999999999999985 45444 889999999999998 5678999999999999


Q ss_pred             EeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC-CCEEEEEeCCCcEEEEe
Q 005277          574 WDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE-GSLLASGSADCTVKLWD  651 (704)
Q Consensus       574 wdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~lasgs~Dg~V~iWd  651 (704)
                      ||+++- .++..+.+|.-.|..+.|                                  ||. ..+||+++.|-+++|||
T Consensus       218 wDir~~r~pl~eL~gh~~AVRkvk~----------------------------------Sph~~~lLaSasYDmT~riw~  263 (311)
T KOG0277|consen  218 WDIRNLRTPLFELNGHGLAVRKVKF----------------------------------SPHHASLLASASYDMTVRIWD  263 (311)
T ss_pred             EehhhccccceeecCCceEEEEEec----------------------------------CcchhhHhhhccccceEEecc
Confidence            999875 568889999999999999                                  775 46899999999999999


Q ss_pred             CCCCccccccccccCccccccccccCCCCcCeEEEEEcc-CCcEEEEeecCCC
Q 005277          652 VTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RNLLFAAGALSKT  703 (704)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~-~g~~La~gs~dgt  703 (704)
                      ...+..              .+.++..|..-|..+.||+ +..++|+.+.|.+
T Consensus       264 ~~~~ds--------------~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~  302 (311)
T KOG0277|consen  264 PERQDS--------------AIETVDHHTEFVCGLDWSLFDPGQVASTGWDEL  302 (311)
T ss_pred             cccchh--------------hhhhhhccceEEeccccccccCceeeecccccc
Confidence            986542              3556667888899999997 5678898888864

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=1.2e-29  Score=257.34  Aligned_cols=261  Identities=25%  Similarity=0.401  Sum_probs=225.6

Q ss_pred             ccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277          328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (704)
Q Consensus       328 ~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (704)
                      +...+++|.......|+.+|.+|..+|..++|+++|..+.+++.|++|++||+.++.                       
T Consensus       235 mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~-----------------------  291 (503)
T KOG0282|consen  235 MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ-----------------------  291 (503)
T ss_pred             CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce-----------------------
Confidence            345778888777788899999999999999999999999999999999999998732                       


Q ss_pred             CCCccceeeccCCccCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe
Q 005277          408 NGRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (704)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~  486 (704)
                           ....+. -...++|+.|+|++ +.+++|+.|+.|+.||+++++.+..|..|-++|..+.|-++|++|++.+.|++
T Consensus       292 -----~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks  365 (503)
T KOG0282|consen  292 -----VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS  365 (503)
T ss_pred             -----EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc
Confidence                 222221 23467899999999 78889999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceeEEec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC---cEEEEeecCC--CCEEEEEEecCCC
Q 005277          487 ARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---ECVRIFIGHR--SMILSLAMSPDGR  560 (704)
Q Consensus       487 i~lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~--~~i~~l~~spdg~  560 (704)
                      ++||+.+..-++.... .+.-...|+..||++++++.-+.|..|.++.+...   .....|.+|.  +.-..+.|||||+
T Consensus       366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~  445 (503)
T KOG0282|consen  366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR  445 (503)
T ss_pred             EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence            9999999877765443 23346778999999999999999999999987532   2234567775  4567789999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC-CCEEE
Q 005277          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE-GSLLA  639 (704)
Q Consensus       561 ~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~la  639 (704)
                      +|++|+.||.+.+||.++.+.+..+++|.+++..+.|                                  +|. ...+|
T Consensus       446 ~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w----------------------------------HP~e~Skva  491 (503)
T KOG0282|consen  446 TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW----------------------------------HPVEPSKVA  491 (503)
T ss_pred             eEEeecCCccEEEeechhhhhhhccccCCcceEEEEe----------------------------------cCCCcceeE
Confidence            9999999999999999999999999999999999999                                  554 56899


Q ss_pred             EEeCCCcEEEEe
Q 005277          640 SGSADCTVKLWD  651 (704)
Q Consensus       640 sgs~Dg~V~iWd  651 (704)
                      |+|.||.|++|+
T Consensus       492 t~~w~G~Ikiwd  503 (503)
T KOG0282|consen  492 TCGWDGLIKIWD  503 (503)
T ss_pred             ecccCceeEecC
Confidence            999999999996

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.3e-29  Score=246.39  Aligned_cols=301  Identities=19%  Similarity=0.330  Sum_probs=246.8

Q ss_pred             ChhHHHHHHHhccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcccCCccccccccCCC
Q 005277          317 PTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE  395 (704)
Q Consensus       317 ~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg-~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~  395 (704)
                      |-+...+..+.+...---.-.+.|-++.  +.+|.++|.|++=+|.. ..+|+|+.||.|+|||+..             
T Consensus        34 Pfe~~rEy~RALNAtKleR~fakPFv~~--L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-------------   98 (433)
T KOG0268|consen   34 PFERAREYTRALNATKLERVFAKPFVGS--LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-------------   98 (433)
T ss_pred             hhhhHHHHHHHhhhHHHHHHhhccchhh--ccccccccchhhcCcchhhhhhccccCceEEEEehhh-------------
Confidence            3445555555554322111223454444  47999999999999986 8899999999999999976             


Q ss_pred             CCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCC
Q 005277          396 NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG  475 (704)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~  475 (704)
                                     ..+...+..|.|.|.+|++..  ..+++++.|.+|+.|.++. ..+.++.+ .+.+.+|.-+..+
T Consensus        99 ---------------R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~  159 (433)
T KOG0268|consen   99 ---------------RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKN  159 (433)
T ss_pred             ---------------hhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-ccccccccccccc
Confidence                           456677889999999999986  6789999999999999985 46666764 4567788888888


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEE
Q 005277          476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA  554 (704)
Q Consensus       476 ~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~  554 (704)
                      ..|+|||.  .|.|||.....|++.+......|.++.|+|.. .+|+++.+|++|.+||++++.+++... -...-+.|+
T Consensus       160 ~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~Is  236 (433)
T KOG0268|consen  160 SVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTIC  236 (433)
T ss_pred             ccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eecccccee
Confidence            89999975  69999999999999999888999999999964 667778899999999999999887664 344567899


Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277          555 MSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC  633 (704)
Q Consensus       555 ~spdg~~l~sg~~dg~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  633 (704)
                      |+|.+-.+++|++|..++.+|++.. +++....+|.+.|.+++|                                  ||
T Consensus       237 wnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdf----------------------------------sp  282 (433)
T KOG0268|consen  237 WNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDF----------------------------------SP  282 (433)
T ss_pred             cCccccceeeccccccceehhhhhhcccchhhcccceeEEEecc----------------------------------CC
Confidence            9998888999999999999999864 577888999999999999                                  99


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCC-CcCeEEEEEccCCcEEEEeecCCC
Q 005277          634 EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK-STPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       634 ~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      .|+-+++||.|.+|+||.+..+..-               ..+.++ -..|.+|.||.|.+++.+||.|++
T Consensus       283 tG~EfvsgsyDksIRIf~~~~~~SR---------------diYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n  338 (433)
T KOG0268|consen  283 TGQEFVSGSYDKSIRIFPVNHGHSR---------------DIYHTKRMQHVFCVKYSMDSKYIISGSDDGN  338 (433)
T ss_pred             CcchhccccccceEEEeecCCCcch---------------hhhhHhhhheeeEEEEeccccEEEecCCCcc
Confidence            9999999999999999999876421               122222 346999999999999999999985

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=4.1e-28  Score=239.24  Aligned_cols=263  Identities=24%  Similarity=0.449  Sum_probs=219.8

Q ss_pred             ccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcC-C--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccc
Q 005277          328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQ-D--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (704)
Q Consensus       328 ~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~-d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (704)
                      +....++|+...  .+.++..+|.+.|.+++|-- +  ...+++++.|.++++|.++.....                  
T Consensus       123 YDg~~riWd~~G--k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~------------------  182 (423)
T KOG0313|consen  123 YDGTSRIWDLKG--KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK------------------  182 (423)
T ss_pred             cCCeeEEEecCC--ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh------------------
Confidence            344556665443  45567889999999887743 2  346999999999999998763211                  


Q ss_pred             cCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-------------------------CCceeEEe
Q 005277          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-------------------------LNANLVCY  459 (704)
Q Consensus       405 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~-------------------------~~~~~~~~  459 (704)
                            ......-.||..+|.+++..+++..+++||.|.+|.+|+..                         +..++..+
T Consensus       183 ------~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl  256 (423)
T KOG0313|consen  183 ------VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL  256 (423)
T ss_pred             ------hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence                  12223334999999999999999999999999999999932                         22346778


Q ss_pred             ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-
Q 005277          460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-  538 (704)
Q Consensus       460 ~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-  538 (704)
                      .+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.+ ...+.|+..+|..++|++|+.|..|++||.+++. 
T Consensus       257 ~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g  334 (423)
T KOG0313|consen  257 EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG  334 (423)
T ss_pred             cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence            89999999999997 66799999999999999999988877764 4679999999999999999999999999999763 


Q ss_pred             --EEEEeecCCCCEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCe-eeeeecCCCceeeeeeeeeeehcccccccccccc
Q 005277          539 --CVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKV  614 (704)
Q Consensus       539 --~~~~~~~h~~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~-~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~  614 (704)
                        ....+.+|++.|.++.|+|. ...|++|+.|+++++||+++.+ ++..+.+|...|.++.|                 
T Consensus       335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW-----------------  397 (423)
T KOG0313|consen  335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDW-----------------  397 (423)
T ss_pred             ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEec-----------------
Confidence              45678899999999999995 4578899999999999999987 99999999999999999                 


Q ss_pred             ccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277          615 STGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVT  653 (704)
Q Consensus       615 ~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~  653 (704)
                                       . ++..|++||.|++|+|+.-.
T Consensus       398 -----------------~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  398 -----------------N-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             -----------------c-CCceEEeccCcceEEEeccc
Confidence                             2 56799999999999998754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=3.9e-28  Score=247.25  Aligned_cols=291  Identities=22%  Similarity=0.328  Sum_probs=223.8

Q ss_pred             CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec-c
Q 005277          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-Q  418 (704)
Q Consensus       340 p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  418 (704)
                      |-.+-..+.+|...|.++++.|.|..|++|+.|-+|++||+..+....                        +..+.+ .
T Consensus       156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------------------~~fr~l~P  211 (641)
T KOG0772|consen  156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------------------------RSFRQLQP  211 (641)
T ss_pred             CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccc------------------------hhhhccCc
Confidence            444555677888899999999999999999999999999998743211                        112222 2


Q ss_pred             CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE------------eecCCcCeeEEEEcCC-CCEEEEEeCCC
Q 005277          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC------------YKGHNYPVWDVQFNPQ-GHYFASSSHDR  485 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~------------~~~h~~~V~~v~~sp~-~~~l~sgs~dg  485 (704)
                      .....|.++.|++.+..|++.+.....+|+|.+....+..            -+||...++|.+|+|. ...|++++.||
T Consensus       212 ~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg  291 (641)
T KOG0772|consen  212 CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG  291 (641)
T ss_pred             ccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC
Confidence            2345799999999999999888888999999875444332            3579999999999995 46799999999


Q ss_pred             eEEEEECCCCc-eeEEec-----cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc---EEEEeecCCC--CEEEEE
Q 005277          486 TARIWSMDRIQ-PLRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE---CVRIFIGHRS--MILSLA  554 (704)
Q Consensus       486 ~i~lwd~~~~~-~~~~~~-----~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~h~~--~i~~l~  554 (704)
                      ++|+||+++.+ ....+.     +..-+++.++|+|+|++||+|+.||+|.+||.++.-   ....-..|..  .|+||.
T Consensus       292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~  371 (641)
T KOG0772|consen  292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSIS  371 (641)
T ss_pred             cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEE
Confidence            99999998754 333332     334578999999999999999999999999975432   1223346776  899999


Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCe-eeeeecCCCc--eeeeeeeeeeehccccccccccccccceeeeeeeEEeeccc
Q 005277          555 MSPDGRYMASGDEDGTIMMWDLASGR-CVTPLMGHTS--CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA  631 (704)
Q Consensus       555 ~spdg~~l~sg~~dg~I~iwdl~~~~-~~~~~~~h~~--~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  631 (704)
                      ||+||++|++-+.|+++++||++..+ ++....+-..  +-+.+                                  |+
T Consensus       372 FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc----------------------------------~F  417 (641)
T KOG0772|consen  372 FSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDC----------------------------------CF  417 (641)
T ss_pred             eccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCcc----------------------------------cc
Confidence            99999999999999999999998753 4444433221  22333                                  44


Q ss_pred             CCCCCEEEEEeC------CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          632 SCEGSLLASGSA------DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       632 s~~g~~lasgs~------Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ||+.++|++|+.      .|++.+||..+-..               ++.+.-....|..+.|+|.-+-+.+|+.||+
T Consensus       418 SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~---------------v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~  480 (641)
T KOG0772|consen  418 SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT---------------VYKIDISTASVVRCLWHPKLNQIFAGSGDGT  480 (641)
T ss_pred             CCCceEEEecccccCCCCCceEEEEeccceee---------------EEEecCCCceEEEEeecchhhheeeecCCCc
Confidence            999999999963      57899999877543               4455555778999999999887888888886

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.9e-28  Score=223.84  Aligned_cols=237  Identities=26%  Similarity=0.457  Sum_probs=212.5

Q ss_pred             ceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005277          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (704)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~  492 (704)
                      ....+..|.++|..+.|+-+|+|.++|+.|.+|++|+...+.++++|.+|...|.+++.+.|+..|++|+.|+.+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC--CcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCe
Q 005277          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS--GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (704)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~--~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~  570 (704)
                      .+++.++.+.+|.+.|+.++|+.+...+++|+.|.++++||.++  .++++.+......|.++..+  +..|++|+.||+
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt  166 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT  166 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence            99999999999999999999999999999999999999999986  46788888888899999885  678999999999


Q ss_pred             EEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEE
Q 005277          571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLW  650 (704)
Q Consensus       571 I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iW  650 (704)
                      ++.||++.|+...-..+|  +|+++.|                                  +++++....++.|+++++.
T Consensus       167 vRtydiR~G~l~sDy~g~--pit~vs~----------------------------------s~d~nc~La~~l~stlrLl  210 (307)
T KOG0316|consen  167 VRTYDIRKGTLSSDYFGH--PITSVSF----------------------------------SKDGNCSLASSLDSTLRLL  210 (307)
T ss_pred             EEEEEeecceeehhhcCC--cceeEEe----------------------------------cCCCCEEEEeeccceeeec
Confidence            999999999887666554  7889988                                  9999999999999999999


Q ss_pred             eCCCCccccccccccCccccccccccCCCCcCeEEE--EEccCCcEEEEeecCC
Q 005277          651 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL--QFSRRNLLFAAGALSK  702 (704)
Q Consensus       651 d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l--~fs~~g~~La~gs~dg  702 (704)
                      |-.+++.               +..+.+|...=+.+  +++.....+++|+.||
T Consensus       211 Dk~tGkl---------------L~sYkGhkn~eykldc~l~qsdthV~sgSEDG  249 (307)
T KOG0316|consen  211 DKETGKL---------------LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG  249 (307)
T ss_pred             ccchhHH---------------HHHhcccccceeeeeeeecccceeEEeccCCc
Confidence            9998864               55666666554443  5566777888888876

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.3e-27  Score=226.61  Aligned_cols=270  Identities=20%  Similarity=0.323  Sum_probs=217.5

Q ss_pred             CCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          351 HNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       351 ~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      .+.|.+++||| ...++++|+.||+||+|++...+.                          ..-+....|.++|.+++|
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~--------------------------~~~ka~~~~~~PvL~v~W   80 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ--------------------------LVPKAQQSHDGPVLDVCW   80 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCc--------------------------ccchhhhccCCCeEEEEE
Confidence            46799999999 567788999999999999975211                          111345679999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC--EEEEEeCCCeEEEEECCCCceeEEeccCCCC
Q 005277          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH--YFASSSHDRTARIWSMDRIQPLRIMAGHLSD  507 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~--~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~  507 (704)
                      +.||..+++|+.|+.+++||+.++ .+..+..|..+|..+.|-+...  .|+|||.|++|++||++...++..+. -...
T Consensus        81 sddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeR  158 (347)
T KOG0647|consen   81 SDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPER  158 (347)
T ss_pred             ccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccce
Confidence            999999999999999999999988 5566777999999999988665  79999999999999999988888776 3355


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE--eecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC--eeee
Q 005277          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI--FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG--RCVT  583 (704)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~--~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~--~~~~  583 (704)
                      +.++..  -..+++++..++.|.+|+++++.....  ...-+-.++|++..+|....+.|+-+|.+.|..+..+  +.-.
T Consensus       159 vYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF  236 (347)
T KOG0647|consen  159 VYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF  236 (347)
T ss_pred             eeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence            665543  345788899999999999987643221  1123446899999999888899999999999998876  3334


Q ss_pred             eecCCCc---------eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          584 PLMGHTS---------CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       584 ~~~~h~~---------~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                      +++.|..         .|.+++|                                  +|.-..|+|+|.||+..+||-..
T Consensus       237 tFkCHR~~~~~~~~VYaVNsi~F----------------------------------hP~hgtlvTaGsDGtf~FWDkda  282 (347)
T KOG0647|consen  237 TFKCHRSTNSVNDDVYAVNSIAF----------------------------------HPVHGTLVTAGSDGTFSFWDKDA  282 (347)
T ss_pred             eEEEeccCCCCCCceEEecceEe----------------------------------ecccceEEEecCCceEEEecchh
Confidence            5555652         3444455                                  88888999999999999999876


Q ss_pred             CccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          655 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                      ..+               +.+.+.+..||++.+|+.+|.++|.+.
T Consensus       283 r~k---------------Lk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  283 RTK---------------LKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             hhh---------------hhccCcCCCccceeEecCCCCEEEEEe
Confidence            543               677889999999999999999998764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.8e-27  Score=227.36  Aligned_cols=248  Identities=23%  Similarity=0.380  Sum_probs=211.6

Q ss_pred             EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      .+.+..|.++|+|++.  ++.++|+|+.|-+|+|||+..                            ......+..|.+.
T Consensus        36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k----------------------------~~qlg~ll~Hags   85 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK----------------------------RKQLGILLSHAGS   85 (362)
T ss_pred             cccccccccceeEEEe--cceeEeccCCCCcEEEEeccc----------------------------hhhhcceeccccc
Confidence            4568889999999998  589999999999999999986                            2344556679999


Q ss_pred             eEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          424 VYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       424 V~~l~~sp~~~--~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      |+++.|.++-.  .|++|+.||.|.+|+...+.++..+++|.+.|+.++.+|.|++-++.+.|+.+++||+-+++.-...
T Consensus        86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~  165 (362)
T KOG0294|consen   86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL  165 (362)
T ss_pred             eEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence            99999999775  8999999999999999999999999999999999999999999999999999999999887765554


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~  581 (704)
                      .- ...-+.|.|+|.|.+++.++.+ .|-+|.+.+.+..+.+.. ...+.|+.|- ++..|++|++|+.|.+||..+..+
T Consensus       166 ~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~  241 (362)
T KOG0294|consen  166 NL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP  241 (362)
T ss_pred             cc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCcc
Confidence            42 1223449999999999998766 589999887766554432 2457777775 678899999999999999999999


Q ss_pred             eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      ...+.+|...|.++.+-.                                .|++.+|+|+|.||.|+|||+....+
T Consensus       242 ~~~~~AH~~RVK~i~~~~--------------------------------~~~~~~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  242 LTEFLAHENRVKDIASYT--------------------------------NPEHEYLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             ceeeecchhheeeeEEEe--------------------------------cCCceEEEEeccCceEEEEEcccccc
Confidence            999999999999987511                                78889999999999999999988643

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=4.3e-27  Score=258.00  Aligned_cols=261  Identities=27%  Similarity=0.491  Sum_probs=232.6

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ...+++|+......+.-.+.+|.++|.+++|..-+.+|++|+.|.+++|||..+                          
T Consensus       227 ~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s--------------------------  280 (537)
T KOG0274|consen  227 DSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST--------------------------  280 (537)
T ss_pred             CceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC--------------------------
Confidence            345567765554444444999999999999988889999999999999999776                          


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEE
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~  488 (704)
                        ..+...+.+|.+.|.++...  ...+++|+.|.+|++|++.++.++..+.+|..+|.++..+  +.++++|+.|++|+
T Consensus       281 --g~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~  354 (537)
T KOG0274|consen  281 --GECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVK  354 (537)
T ss_pred             --CcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEE
Confidence              46778889999999999876  5568889999999999999999999999999999999997  88999999999999


Q ss_pred             EEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-cEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      +||..+++++..+.+|...|.++.+.+. +++++|+.|++|++||++++ +++.++.+|..-+.++.+  .+++|++++.
T Consensus       355 VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~a  431 (537)
T KOG0274|consen  355 VWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSA  431 (537)
T ss_pred             EEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccc
Confidence            9999999999999999999999988665 89999999999999999999 999999999998877766  5889999999


Q ss_pred             CCeEEEEeCCCCeeeeeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277          568 DGTIMMWDLASGRCVTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT  646 (704)
Q Consensus       568 dg~I~iwdl~~~~~~~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~  646 (704)
                      ||.|++||..+++++..+.+ |...|+.+.+                                  .  ...+++++.||+
T Consensus       432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~----------------------------------~--~~~il~s~~~~~  475 (537)
T KOG0274|consen  432 DGTIKLWDAEEGECLRTLEGRHVGGVSALAL----------------------------------G--KEEILCSSDDGS  475 (537)
T ss_pred             cccEEEeecccCceeeeeccCCcccEEEeec----------------------------------C--cceEEEEecCCe
Confidence            99999999999999999998 6788888876                                  3  468899999999


Q ss_pred             EEEEeCCCCccccc
Q 005277          647 VKLWDVTTSTKVLK  660 (704)
Q Consensus       647 V~iWd~~~~~~~~~  660 (704)
                      +++||+.++.....
T Consensus       476 ~~l~dl~~~~~~~~  489 (537)
T KOG0274|consen  476 VKLWDLRSGTLIRT  489 (537)
T ss_pred             eEEEecccCchhhh
Confidence            99999999876543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-27  Score=237.76  Aligned_cols=249  Identities=21%  Similarity=0.386  Sum_probs=211.4

Q ss_pred             EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      ..|+.+|..+|.-+.||||.++|++++.|-.+.+||+.++.....                           .-.+|...
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~---------------------------y~~~~~~S  314 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL---------------------------YPSGLGFS  314 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh---------------------------cccCcCCC
Confidence            568899999999999999999999999999999999987432211                           11235678


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC-CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~  502 (704)
                      +.+++|.|||..+++|+.|++|..||++ |......++- ...|++++..+||+++++.+.|..+++++.++........
T Consensus       315 ~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis  393 (519)
T KOG0293|consen  315 VSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS  393 (519)
T ss_pred             cceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc
Confidence            9999999999999999999999999998 4445555543 3569999999999999999999999999998765554444


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCC--EEEEEEec-CCCEEEEEeCCCeEEEEeCCCC
Q 005277          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM--ILSLAMSP-DGRYMASGDEDGTIMMWDLASG  579 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~--i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~  579 (704)
                       ...+|++++.+.+++++++.-.+..|++||+...+.++.+.||+..  +..-||-- +..++++|++|+.|+||+..+|
T Consensus       394 -e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg  472 (519)
T KOG0293|consen  394 -EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG  472 (519)
T ss_pred             -ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence             4578999999999999999999999999999999999999999763  44445543 4579999999999999999999


Q ss_pred             eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC-CCCEEEEEeCCCcEEEEeCCCC
Q 005277          580 RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC-EGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       580 ~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                      +++..+.||...|.+++|                                  +| +..++|++|.||+||||.....
T Consensus       473 kll~~LsGHs~~vNcVsw----------------------------------NP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  473 KLLAVLSGHSKTVNCVSW----------------------------------NPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             ceeEeecCCcceeeEEec----------------------------------CCCCHHHhhccCCCCeEEEecCCcc
Confidence            999999999999999999                                  55 4578999999999999987653

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=5.1e-27  Score=237.31  Aligned_cols=263  Identities=27%  Similarity=0.424  Sum_probs=218.1

Q ss_pred             CCeEEEEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc
Q 005277          340 PSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ  418 (704)
Q Consensus       340 p~~~~~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (704)
                      +.+.......|.+.|+.+..-|. ..++|+++..+.|.|||..+.......                  .+..+.-..+.
T Consensus       113 ~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~------------------~~~~~Pdl~L~  174 (422)
T KOG0264|consen  113 GKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA------------------SGECRPDLRLK  174 (422)
T ss_pred             cceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc------------------cccCCCceEEE
Confidence            34555566889999999999986 678888899999999998763221110                  01234456788


Q ss_pred             CCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc-------eeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEE
Q 005277          419 GHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNA-------NLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARI  489 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~-------~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~l  489 (704)
                      ||.+.-++++|++... .|++|+.|++|.+||+....       ....+.+|...|.+++|++ +...|++++.|+.+.|
T Consensus       175 gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~i  254 (422)
T KOG0264|consen  175 GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMI  254 (422)
T ss_pred             eecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEE
Confidence            9999899999999765 68899999999999997543       3567889999999999999 6778999999999999


Q ss_pred             EECC--CCceeEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC-cEEEEeecCCCCEEEEEEecC-CCEEEE
Q 005277          490 WSMD--RIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPD-GRYMAS  564 (704)
Q Consensus       490 wd~~--~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~i~~l~~spd-g~~l~s  564 (704)
                      ||++  +.++.....+|.+.|.|++|+| ++..||+||.|++|++||+|+- +++..+.+|...|.++.|||+ ...|++
T Consensus       255 wD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLAS  334 (422)
T KOG0264|consen  255 WDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLAS  334 (422)
T ss_pred             EEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEe
Confidence            9999  5667778889999999999999 5788899999999999999974 578889999999999999996 568899


Q ss_pred             EeCCCeEEEEeCCCC--------------eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277          565 GDEDGTIMMWDLASG--------------RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC  630 (704)
Q Consensus       565 g~~dg~I~iwdl~~~--------------~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (704)
                      ++.|+.+.|||+..-              +++..-.||...|..++|                                 
T Consensus       335 Sg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsW---------------------------------  381 (422)
T KOG0264|consen  335 SGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSW---------------------------------  381 (422)
T ss_pred             cccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccC---------------------------------
Confidence            999999999999642              234555789999999999                                 


Q ss_pred             cCCCC-CEEEEEeCCCcEEEEeCCC
Q 005277          631 ASCEG-SLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       631 ~s~~g-~~lasgs~Dg~V~iWd~~~  654 (704)
                       +|.. -.|++.+.|+.+.||.+..
T Consensus       382 -np~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  382 -NPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             -CCCCCeEEEEecCCceEEEeeccc
Confidence             6765 4678899999999999874

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=4e-26  Score=250.20  Aligned_cols=230  Identities=17%  Similarity=0.227  Sum_probs=188.4

Q ss_pred             EeeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          347 FINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      +.+|.+.|++++|+| ++++||+|+.||+|+||++.......                     ........+.+|...|.
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---------------------~~~~~l~~L~gH~~~V~  129 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---------------------NISDPIVHLQGHTKKVG  129 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---------------------ccCcceEEecCCCCcEE
Confidence            578999999999999 89999999999999999987521100                     01134566889999999


Q ss_pred             EEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277          426 SASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       426 ~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      +++|+|++ .+|++|+.|++|+|||+.++..+..+.+|...|.+++|+|+|.+|++|+.|++|++||+++++.+..+.+|
T Consensus       130 ~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H  209 (493)
T PTZ00421        130 IVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH  209 (493)
T ss_pred             EEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence            99999986 68999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             CCC-eeEEEEcCCCCEEEEEE----CCCcEEEEeCCCCc-EEEEeecC-CCCEEEEEEecCCCEEEEEe-CCCeEEEEeC
Q 005277          505 LSD-VDCVRWHINCNYIATGS----SDKTVRLWDVSSGE-CVRIFIGH-RSMILSLAMSPDGRYMASGD-EDGTIMMWDL  576 (704)
Q Consensus       505 ~~~-V~~v~~~p~~~~l~tgs----~dg~I~iwd~~~~~-~~~~~~~h-~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl  576 (704)
                      .+. +..+.|++++..+++++    .|+.|++||+++.. ++.....+ ...+....|++++++|++|+ .||.|++||+
T Consensus       210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl  289 (493)
T PTZ00421        210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL  289 (493)
T ss_pred             CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence            765 45678999888887654    47899999998754 44433333 34566678999999999887 5999999999


Q ss_pred             CCCeeeeeecC-CCceeeeeee
Q 005277          577 ASGRCVTPLMG-HTSCVWTLAY  597 (704)
Q Consensus       577 ~~~~~~~~~~~-h~~~V~sl~~  597 (704)
                      .+++.+..... +..++..+.|
T Consensus       290 ~~~~~~~~~~~~s~~~~~g~~~  311 (493)
T PTZ00421        290 MNERLTFCSSYSSVEPHKGLCM  311 (493)
T ss_pred             eCCceEEEeeccCCCCCcceEe
Confidence            99887765533 3344555555

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1e-26  Score=257.33  Aligned_cols=267  Identities=23%  Similarity=0.413  Sum_probs=222.6

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      +...|.+.|+|+.|+|||++||+|++|+.|.||.....+..... +..+.         .......+.+..+.+|.+.|.
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~f-gs~g~---------~~~vE~wk~~~~l~~H~~DV~  133 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVF-GSTGG---------AKNVESWKVVSILRGHDSDVL  133 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccc-ccccc---------ccccceeeEEEEEecCCCccc
Confidence            46789999999999999999999999999999997741110000 00000         011223567888999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~  505 (704)
                      .++|+|++.+|++++.|++|.+|+..+...+..+++|.+.|..+.|.|-|+|||+-+.|++|++|++.+......+.++.
T Consensus       134 Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf  213 (942)
T KOG0973|consen  134 DVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF  213 (942)
T ss_pred             eeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999988877776666443


Q ss_pred             ------CCeeEEEEcCCCCEEEEEE----CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC-----CC----------
Q 005277          506 ------SDVDCVRWHINCNYIATGS----SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-----GR----------  560 (704)
Q Consensus       506 ------~~V~~v~~~p~~~~l~tgs----~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd-----g~----------  560 (704)
                            .-+..+.|+|||.+|++..    .-.++.|.+-.+.+.-..+.||.+++.++.|+|.     .+          
T Consensus       214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~  293 (942)
T KOG0973|consen  214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY  293 (942)
T ss_pred             hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence                  3467899999999999853    2356888888788877889999999999999991     11          


Q ss_pred             --EEEEEeCCCeEEEEeCCCCeeeeeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277          561 --YMASGDEDGTIMMWDLASGRCVTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL  637 (704)
Q Consensus       561 --~l~sg~~dg~I~iwdl~~~~~~~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  637 (704)
                        .+|+|+.|++|.||.....+++..+.. ....|..++|                                  +|||..
T Consensus       294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsW----------------------------------spdG~~  339 (942)
T KOG0973|consen  294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSW----------------------------------SPDGFS  339 (942)
T ss_pred             eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeE----------------------------------cCCCCe
Confidence              678899999999999988887765532 4578999999                                  999999


Q ss_pred             EEEEeCCCcEEEEeCCCCc
Q 005277          638 LASGSADCTVKLWDVTTST  656 (704)
Q Consensus       638 lasgs~Dg~V~iWd~~~~~  656 (704)
                      |+++|.||+|.+..++...
T Consensus       340 LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  340 LFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             EEEEecCCeEEEEEcchHH
Confidence            9999999999999998643

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.7e-27  Score=237.06  Aligned_cols=246  Identities=21%  Similarity=0.349  Sum_probs=213.0

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      +......|.++.|-.||++||+|...|.|+|||+++                            ....+.+.+|+.+|..
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~----------------------------r~iLR~~~ah~apv~~  115 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS----------------------------RVILRQLYAHQAPVHV  115 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc----------------------------HHHHHHHhhccCceeE
Confidence            444567899999999999999999999999999654                            3355778899999999


Q ss_pred             EEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCC-ceeEEecc
Q 005277          427 ASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI-QPLRIMAG  503 (704)
Q Consensus       427 l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~  503 (704)
                      +.|+|++. .+++|+.|+.+++||+.+......+.+|+..|.|.+|+| +++.++|||.||+|++||++.. ..+..+. 
T Consensus       116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-  194 (487)
T KOG0310|consen  116 TKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-  194 (487)
T ss_pred             EEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-
Confidence            99999766 566899999999999998887668899999999999999 5678999999999999999987 5555554 


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~  582 (704)
                      |..+|..+.+-|.|..|++++ ...|++||+.+|. .+..+..|...|+|+++..++..|++|+-||.+++||+.+.+.+
T Consensus       195 hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv  273 (487)
T KOG0310|consen  195 HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV  273 (487)
T ss_pred             CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEE
Confidence            899999999999999999986 4579999999654 44445559999999999999999999999999999998888888


Q ss_pred             eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          583 TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       583 ~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      ..+. ..++|-+++.                                  +|++..++.|..||.+.+=+....++
T Consensus       274 ~s~~-~~~pvLsiav----------------------------------s~dd~t~viGmsnGlv~~rr~~~k~k  313 (487)
T KOG0310|consen  274 HSWK-YPGPVLSIAV----------------------------------SPDDQTVVIGMSNGLVSIRRREVKKK  313 (487)
T ss_pred             Eeee-cccceeeEEe----------------------------------cCCCceEEEecccceeeeehhhcccC
Confidence            7775 6788999988                                  99999999999999998886655443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4e-27  Score=226.52  Aligned_cols=282  Identities=22%  Similarity=0.387  Sum_probs=233.1

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      .+.+|.++|..++......++.+++.|.+-+||.+..                            ..+...+.||.+.|+
T Consensus       143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es----------------------------g~CL~~Y~GH~GSVN  194 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES----------------------------GACLATYTGHTGSVN  194 (481)
T ss_pred             hhcccccceeeehhhcCCcceeecccccceeEEeecc----------------------------ccceeeeccccccee
Confidence            4679999999999988788999999999999999986                            456778899999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCC------C----------------------------------CceeEEeecCCcC
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTK------L----------------------------------NANLVCYKGHNYP  465 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~------~----------------------------------~~~~~~~~~h~~~  465 (704)
                      ++.|++.+.++++++.|++..||...      .                                  ..++..+.+|.+.
T Consensus       195 sikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v  274 (481)
T KOG0300|consen  195 SIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV  274 (481)
T ss_pred             eEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc
Confidence            99999999999999999999999611      0                                  0124567789999


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEEee
Q 005277          466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFI  544 (704)
Q Consensus       466 V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~  544 (704)
                      |.+..|...|+.++++++|++..+||++++.++..+.||....+.++-||..+++++.+.|.+.++||++. -..+.+|.
T Consensus       275 V~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ  354 (481)
T KOG0300|consen  275 VSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ  354 (481)
T ss_pred             eEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999984 35688999


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe-eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeee
Q 005277          545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL  623 (704)
Q Consensus       545 ~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~-~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (704)
                      ||...|+++.|..+. .+++|++|.+|++||+++.+ ++.+++ -.+++..++.                          
T Consensus       355 GHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvav--------------------------  406 (481)
T KOG0300|consen  355 GHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAV--------------------------  406 (481)
T ss_pred             ccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEe--------------------------
Confidence            999999999998665 58899999999999998754 455554 3455666665                          


Q ss_pred             eEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCC--cEEEEeecC
Q 005277          624 TIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN--LLFAAGALS  701 (704)
Q Consensus       624 ~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g--~~La~gs~d  701 (704)
                              +..+.+|+.--.+..|++||+...... ..          +-..-.+|...|.|++|..+-  .-|.++++|
T Consensus       407 --------s~g~~iIAiPhDNRqvRlfDlnG~Rla-Rl----------PrtsRqgHrRMV~c~AW~eehp~cnLftcGFD  467 (481)
T KOG0300|consen  407 --------SKGHPIIAIPHDNRQVRLFDLNGNRLA-RL----------PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFD  467 (481)
T ss_pred             --------ecCCceEEeccCCceEEEEecCCCccc-cC----------CcccccccceeeeeeeccccCccccccccccc
Confidence                    666778888888889999999764321 11          112345788899999997543  224455555


Q ss_pred             C
Q 005277          702 K  702 (704)
Q Consensus       702 g  702 (704)
                      .
T Consensus       468 R  468 (481)
T KOG0300|consen  468 R  468 (481)
T ss_pred             c
Confidence            3

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.8e-26  Score=244.66  Aligned_cols=263  Identities=25%  Similarity=0.429  Sum_probs=228.3

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      ..+.+|+... ..|..|+.  .+-+.|..|-|.++++++|...|.+.+||+..                           
T Consensus       394 ~SikiWn~~t-~kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS---------------------------  443 (888)
T KOG0306|consen  394 ESIKIWNRDT-LKCIRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFDLAS---------------------------  443 (888)
T ss_pred             CcEEEEEccC-cceeEEec--cccEEEEEecCCCceEEEeccCCceEEEEeeh---------------------------
Confidence            4556665432 12233322  23789999999999999999999999999875                           


Q ss_pred             CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----CceeE--Eee-----cCCcCeeEEEEcCCCCE
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL-----NANLV--CYK-----GHNYPVWDVQFNPQGHY  477 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~-----~~~~~--~~~-----~h~~~V~~v~~sp~~~~  477 (704)
                       ...+....+|.+.|.+++.+||+..+++||.|.+|++||...     +....  .++     .-...|.|+.+||||++
T Consensus       444 -~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  444 -ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             -hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence             233445568999999999999999999999999999999642     21111  111     23567999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec
Q 005277          478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP  557 (704)
Q Consensus       478 l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp  557 (704)
                      ++++--|.++++|-+++.+....+.||.-+|.|+..+|+++.++|||.|..|++|-+.=|.|.+.+.+|...|.++.|-|
T Consensus       523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P  602 (888)
T KOG0306|consen  523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP  602 (888)
T ss_pred             EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc
Confidence            99999999999999999999899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277          558 DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL  637 (704)
Q Consensus       558 dg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  637 (704)
                      ....+.++|.||.|+-||-.....+.++.+|...|++++.                                  +|+|.+
T Consensus       603 ~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav----------------------------------~~~G~~  648 (888)
T KOG0306|consen  603 KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAV----------------------------------SPNGSF  648 (888)
T ss_pred             cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEE----------------------------------cCCCCe
Confidence            9999999999999999999999999999999999999999                                  999999


Q ss_pred             EEEEeCCCcEEEEeCCCCcc
Q 005277          638 LASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       638 lasgs~Dg~V~iWd~~~~~~  657 (704)
                      ++++|.|.+|++|.......
T Consensus       649 vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  649 VVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             EEeccCCceeEeeeccCcce
Confidence            99999999999999876443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.3e-27  Score=247.93  Aligned_cols=239  Identities=22%  Similarity=0.397  Sum_probs=212.6

Q ss_pred             CCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEe
Q 005277          361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS  440 (704)
Q Consensus       361 ~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s  440 (704)
                      |.+++|.+|+.||.|++|++.......                      .......+..|+..|+.+....+++.|+|+|
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~----------------------s~~~~asme~HsDWVNDiiL~~~~~tlIS~S   92 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEP----------------------STPYIASMEHHSDWVNDIILCGNGKTLISAS   92 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCc----------------------ccchhhhhhhhHhHHhhHHhhcCCCceEEec
Confidence            467889999999999999987522110                      0113455778999999999999999999999


Q ss_pred             CCCeEEEEeCCCC--ceeEEeecCCcCeeEEEE-cCCCCEEEEEeCCCeEEEEECCCCce----------eEEec-cCCC
Q 005277          441 ADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQF-NPQGHYFASSSHDRTARIWSMDRIQP----------LRIMA-GHLS  506 (704)
Q Consensus       441 ~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~v~~-sp~~~~l~sgs~dg~i~lwd~~~~~~----------~~~~~-~~~~  506 (704)
                      .|.+|++|+...+  -+..++..|...|.|++. .++...+|+||-|+.|.+||++++..          ...+. |+..
T Consensus        93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~  172 (735)
T KOG0308|consen   93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD  172 (735)
T ss_pred             CCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence            9999999999877  578888999999999999 77889999999999999999997622          22233 7888


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (704)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~  586 (704)
                      .|.+++.+++|..|++|+..+.+++||.++++.+..+.||...|.++..++||..+++++.||+|++||+...+++.++.
T Consensus       173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~  252 (735)
T KOG0308|consen  173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI  252 (735)
T ss_pred             ceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          587 GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       587 ~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                      .|...||++..                                  +++=..+++|+.||.|..=|+.+.
T Consensus       253 vH~e~VWaL~~----------------------------------~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  253 VHKEGVWALQS----------------------------------SPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eccCceEEEee----------------------------------CCCcceEEecCCCCcEEecccCCc
Confidence            99999999988                                  888889999999999999999885

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3e-26  Score=242.27  Aligned_cols=268  Identities=24%  Similarity=0.349  Sum_probs=229.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (704)
                      .+-+.|+ ..+.||+|. ...|.+|+-....                            .......+...|+++.|+++|
T Consensus       180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~----------------------------v~~l~~~~~~~vtSv~ws~~G  229 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGS----------------------------VTELCSFGEELVTSVKWSPDG  229 (484)
T ss_pred             hhHhhcc-cCCeEEEEe-cceEEEEecCCCc----------------------------eEEeEecCCCceEEEEECCCC
Confidence            3457788 456788774 5579999976521                            112222237899999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeec-CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE-eccCCCCeeEE
Q 005277          434 DFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLSDVDCV  511 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~-~~~~~~~V~~v  511 (704)
                      .+|++|..+|.|.|||....+.+..+.+ |...|-+++|.  +..+.+|+.|+.|..+|++..+.... +.+|...|..+
T Consensus       230 ~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgL  307 (484)
T KOG0305|consen  230 SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGL  307 (484)
T ss_pred             CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeee
Confidence            9999999999999999999999999998 99999999997  77899999999999999998766555 88999999999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec-CCCEEEEEe--CCCeEEEEeCCCCeeeeeecCC
Q 005277          512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD--EDGTIMMWDLASGRCVTPLMGH  588 (704)
Q Consensus       512 ~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp-dg~~l~sg~--~dg~I~iwdl~~~~~~~~~~~h  588 (704)
                      .|+++++++|+|+.|+.+.|||.....+...+..|.+.|.+++|+| ....||+|+  .|++|++||..++..+..+. -
T Consensus       308 kws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-t  386 (484)
T KOG0305|consen  308 KWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-T  386 (484)
T ss_pred             EECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-c
Confidence            9999999999999999999999988888999999999999999999 566888865  79999999999999887775 3


Q ss_pred             CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEE--eCCCcEEEEeCCCCccccccccccC
Q 005277          589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG--SADCTVKLWDVTTSTKVLKTEEKSG  666 (704)
Q Consensus       589 ~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasg--s~Dg~V~iWd~~~~~~~~~~~~~~~  666 (704)
                      .+.|.++.|                                  ++..+-|+++  ..++.|.||++.+.           
T Consensus       387 gsQVcsL~W----------------------------------sk~~kEi~sthG~s~n~i~lw~~ps~-----------  421 (484)
T KOG0305|consen  387 GSQVCSLIW----------------------------------SKKYKELLSTHGYSENQITLWKYPSM-----------  421 (484)
T ss_pred             CCceeeEEE----------------------------------cCCCCEEEEecCCCCCcEEEEecccc-----------
Confidence            568999999                                  8887655544  46789999999874           


Q ss_pred             ccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          667 TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       667 ~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                          ..+..+.+|...|..+++||||..+++|+.|.|
T Consensus       422 ----~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DET  454 (484)
T KOG0305|consen  422 ----KLVAELLGHTSRVLYLALSPDGETIVTGAADET  454 (484)
T ss_pred             ----ceeeeecCCcceeEEEEECCCCCEEEEecccCc
Confidence                346788899999999999999999999999976

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.1e-26  Score=249.12  Aligned_cols=239  Identities=24%  Similarity=0.408  Sum_probs=192.8

Q ss_pred             eecc-CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----------------------------------------
Q 005277          415 TLYQ-GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL-----------------------------------------  452 (704)
Q Consensus       415 ~~~~-~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~-----------------------------------------  452 (704)
                      +.+. +|.+.|.++.||+||+|||+|+.||.|+||.+..                                         
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            3445 8999999999999999999999999999998654                                         


Q ss_pred             -------------------CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEE
Q 005277          453 -------------------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW  513 (704)
Q Consensus       453 -------------------~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~  513 (704)
                                         .+++..|.||.+.|.++.|+. .++|++++.|++|+||++....++..|. |.+-|+||+|
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF  417 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF  417 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence                               012244678999999999995 4589999999999999999999999987 9999999999


Q ss_pred             cC-CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC--C--
Q 005277          514 HI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--H--  588 (704)
Q Consensus       514 ~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~--h--  588 (704)
                      +| |.+|+++|+-||.||||++...+.+.... -..-|++++|+|||++.++|+.+|.+++|+....+.+..+.-  |  
T Consensus       418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~  496 (712)
T KOG0283|consen  418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK  496 (712)
T ss_pred             cccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence            99 78999999999999999998877766554 447899999999999999999999999999988776654421  1  


Q ss_pred             ----CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccc
Q 005277          589 ----TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK  664 (704)
Q Consensus       589 ----~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~  664 (704)
                          ...|+.+.|.                                 ..+...|++.++|..|||+|......+.++.  
T Consensus       497 Kk~~~~rITG~Q~~---------------------------------p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK--  541 (712)
T KOG0283|consen  497 KKKQGKRITGLQFF---------------------------------PGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK--  541 (712)
T ss_pred             ccccCceeeeeEec---------------------------------CCCCCeEEEecCCCceEEEeccchhhhhhhc--
Confidence                2278888872                                 2233467888899999999997765443322  


Q ss_pred             cCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          665 SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       665 ~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                                -+....+ -...+|+.||+++++|+.|.
T Consensus       542 ----------G~~n~~S-Q~~Asfs~Dgk~IVs~seDs  568 (712)
T KOG0283|consen  542 ----------GFRNTSS-QISASFSSDGKHIVSASEDS  568 (712)
T ss_pred             ----------ccccCCc-ceeeeEccCCCEEEEeecCc
Confidence                      1222222 34568999999999999764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=4.8e-27  Score=226.44  Aligned_cols=242  Identities=28%  Similarity=0.397  Sum_probs=216.7

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc-CCccCeE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSGPVY  425 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~  425 (704)
                      |.-+.+.|.|+.||.|...||+|+.||.|+||.+.++                            .+.+.+. +|+..|+
T Consensus       259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG----------------------------~ClRrFdrAHtkGvt  310 (508)
T KOG0275|consen  259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG----------------------------QCLRRFDRAHTKGVT  310 (508)
T ss_pred             eeecccceEEEeecccHHHhhccCcCCcEEEEEEecc----------------------------hHHHHhhhhhccCee
Confidence            5567889999999999999999999999999999873                            3334443 8999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc--
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG--  503 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~--  503 (704)
                      |+.|+.|+..+++++.|.++++.-+.+|+++..+++|.+.|+...|.++|+++++++.||+|++|+..+.+++.+|..  
T Consensus       311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~  390 (508)
T KOG0275|consen  311 CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG  390 (508)
T ss_pred             EEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988874  


Q ss_pred             CCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEeec---CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277          504 HLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (704)
Q Consensus       504 ~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~  579 (704)
                      ...+|.++-.-| +...++++....+|++.++ .|+.++.|..   ..+...+.+.||.|.++++.++|+.++.+...+|
T Consensus       391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG  469 (508)
T KOG0275|consen  391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG  469 (508)
T ss_pred             CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence            445677777666 5678888889999999997 5788888853   2356778889999999999999999999999999


Q ss_pred             eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEe
Q 005277          580 RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD  651 (704)
Q Consensus       580 ~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd  651 (704)
                      +...++..|...|..++-                                  +|..+.+|+-+.||.+++|.
T Consensus       470 ~LE~tl~VhEkdvIGl~H----------------------------------HPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  470 KLERTLPVHEKDVIGLTH----------------------------------HPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ceeeeeeccccccccccc----------------------------------CcccchhhhhcccchhhhcC
Confidence            999999999998888887                                  99999999999999999995

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=8.6e-26  Score=213.30  Aligned_cols=235  Identities=28%  Similarity=0.380  Sum_probs=210.4

Q ss_pred             eccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005277          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI  495 (704)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~  495 (704)
                      .++||..+++.+.++.+|.+|++|+.|.++.+|-...|+.+.+|.+|++.||++..+.+.+++++|+.|.++++||+.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46799999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             ceeEEeccCCCCeeEEEEcCCCCEEEEEEC-----CCcEEEEeCC-------CCcEEEEeecCCCCEEEEEEecCCCEEE
Q 005277          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSS-----DKTVRLWDVS-------SGECVRIFIGHRSMILSLAMSPDGRYMA  563 (704)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-----dg~I~iwd~~-------~~~~~~~~~~h~~~i~~l~~spdg~~l~  563 (704)
                      +.+..+. ...+|..+.|+++|++++....     .+.|.++|++       ...++..+..+...++.+-|.|-+++|+
T Consensus        85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii  163 (327)
T KOG0643|consen   85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII  163 (327)
T ss_pred             cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence            9998887 5688999999999999888764     3679999998       4566778888889999999999999999


Q ss_pred             EEeCCCeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe
Q 005277          564 SGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS  642 (704)
Q Consensus       564 sg~~dg~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs  642 (704)
                      +|..||.|.+||+++| +.+.....|...|+.+.+                                  +++..++++|+
T Consensus       164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~----------------------------------s~d~T~FiT~s  209 (327)
T KOG0643|consen  164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF----------------------------------SRDRTYFITGS  209 (327)
T ss_pred             EecCCCcEEEEEcccCceeeechhhhccccccccc----------------------------------cCCcceEEecc
Confidence            9999999999999998 455666889999999999                                  99999999999


Q ss_pred             CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          643 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       643 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                      .|.+-++||+.+-..               +.++. ...||++.+++|-...++.|+..
T Consensus       210 ~Dttakl~D~~tl~v---------------~Kty~-te~PvN~aaisP~~d~VilgGGq  252 (327)
T KOG0643|consen  210 KDTTAKLVDVRTLEV---------------LKTYT-TERPVNTAAISPLLDHVILGGGQ  252 (327)
T ss_pred             cCccceeeeccceee---------------EEEee-ecccccceecccccceEEecCCc
Confidence            999999999988543               44443 46799999999988777776643

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2e-25  Score=215.43  Aligned_cols=267  Identities=19%  Similarity=0.271  Sum_probs=217.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      .+.|+++.|+|.++.|++++.||++++|++...                             .......|..++.+++|.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-----------------------------~l~~~~~~~~plL~c~F~   63 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-----------------------------SLKLKFKHGAPLLDCAFA   63 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccch-----------------------------hhhhheecCCceeeeecc
Confidence            568999999999999999999999999998752                             222334588999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeE
Q 005277          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC  510 (704)
Q Consensus       431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~  510 (704)
                      + ...+++|+.||.|+.+|+.++.... +..|..+|.+|.+++....+++||+|++|++||.+.......+.. ...|.|
T Consensus        64 d-~~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~  140 (323)
T KOG1036|consen   64 D-ESTIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYC  140 (323)
T ss_pred             C-CceEEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEE
Confidence            7 4568999999999999999776544 556999999999999888999999999999999997555555543 347877


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe--ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC----eeeee
Q 005277          511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG----RCVTP  584 (704)
Q Consensus       511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~--~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~----~~~~~  584 (704)
                      +..  .++.|++|+.+..|.+||+++.......  ..-+-.+.|+++-|++.-.++++-||.|.+=.+...    +.-..
T Consensus       141 ~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya  218 (323)
T KOG1036|consen  141 MDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA  218 (323)
T ss_pred             Eec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence            764  5789999999999999999986544322  133457999999999888999999999998776655    33344


Q ss_pred             ecCCC---------ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          585 LMGHT---------SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       585 ~~~h~---------~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                      ++.|.         -+|.+++|                                  +|-...|||||.||.|.+||..+.
T Consensus       219 FkCHr~~~~~~~~~yPVNai~F----------------------------------hp~~~tfaTgGsDG~V~~Wd~~~r  264 (323)
T KOG1036|consen  219 FKCHRLSEKDTEIIYPVNAIAF----------------------------------HPIHGTFATGGSDGIVNIWDLFNR  264 (323)
T ss_pred             EEeeecccCCceEEEEeceeEe----------------------------------ccccceEEecCCCceEEEccCcch
Confidence            55554         26777777                                  888889999999999999999886


Q ss_pred             ccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277          656 TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       656 ~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~  700 (704)
                      +.               +..+....+.|.+++|+.+|.+||+|+.
T Consensus       265 Kr---------------l~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  265 KR---------------LKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             hh---------------hhhccCCCCceEEEEeccCCCeEEEEec
Confidence            54               5566666788999999999999999875

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=3e-26  Score=215.82  Aligned_cols=237  Identities=23%  Similarity=0.348  Sum_probs=209.6

Q ss_pred             eeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--EeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEE
Q 005277          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWS  491 (704)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~--~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd  491 (704)
                      +.+++|.+.|.+++|+-+|..|++|+.|+++.+|+++......  .+++|...|-.++|+| +...|++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            5577899999999999999999999999999999998775443  4578999999999998 677899999999999999


Q ss_pred             CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277          492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (704)
Q Consensus       492 ~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I  571 (704)
                      ++.++++......... .-+.|+|+|.++++|+.|..|...|.++.+.+.... ....+..++|+-++.+++....-|+|
T Consensus        94 ~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v  171 (313)
T KOG1407|consen   94 IRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV  171 (313)
T ss_pred             eccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence            9999999887755444 457899999999999999999999999988776653 45567889999888888877778999


Q ss_pred             EEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEe
Q 005277          572 MMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD  651 (704)
Q Consensus       572 ~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd  651 (704)
                      .|.....-+++..+++|.....++.|                                  +|+|+++|+|+.|-.+.+||
T Consensus       172 ~ILsypsLkpv~si~AH~snCicI~f----------------------------------~p~GryfA~GsADAlvSLWD  217 (313)
T KOG1407|consen  172 EILSYPSLKPVQSIKAHPSNCICIEF----------------------------------DPDGRYFATGSADALVSLWD  217 (313)
T ss_pred             EEEeccccccccccccCCcceEEEEE----------------------------------CCCCceEeeccccceeeccC
Confidence            99999999999999999999999999                                  99999999999999999999


Q ss_pred             CCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          652 VTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      +..-               -++..+..+.-||..++||.+|++||+||.|-
T Consensus       218 ~~EL---------------iC~R~isRldwpVRTlSFS~dg~~lASaSEDh  253 (313)
T KOG1407|consen  218 VDEL---------------ICERCISRLDWPVRTLSFSHDGRMLASASEDH  253 (313)
T ss_pred             hhHh---------------hhheeeccccCceEEEEeccCcceeeccCccc
Confidence            9763               45667778899999999999999999999873

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=3.5e-25  Score=243.75  Aligned_cols=223  Identities=20%  Similarity=0.307  Sum_probs=180.8

Q ss_pred             EeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCCc--------eeEEeccCCCCee
Q 005277          439 SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQ--------PLRIMAGHLSDVD  509 (704)
Q Consensus       439 ~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~~--------~~~~~~~~~~~V~  509 (704)
                      |+.++.|++|+......+..+.+|..+|++++|+|+ +.+|++|+.||+|++||+.+..        ++..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            677899999999888888889999999999999996 7899999999999999997532        3456788999999


Q ss_pred             EEEEcCCCCE-EEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC
Q 005277          510 CVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH  588 (704)
Q Consensus       510 ~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h  588 (704)
                      +++|||++.. |++|+.|++|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+|
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            9999998875 4789999999999999998877775 6678999999999999999999999999999999999999999


Q ss_pred             CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC----cEEEEeCCCCccccccccc
Q 005277          589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC----TVKLWDVTTSTKVLKTEEK  664 (704)
Q Consensus       589 ~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg----~V~iWd~~~~~~~~~~~~~  664 (704)
                      .+.+.+..+.                             ...+++++.+|+++|.|+    .|+|||+.......     
T Consensus       209 ~g~~~s~~v~-----------------------------~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl-----  254 (568)
T PTZ00420        209 DGGKNTKNIW-----------------------------IDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL-----  254 (568)
T ss_pred             cCCceeEEEE-----------------------------eeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce-----
Confidence            8765443320                             011167888999988774    79999998643211     


Q ss_pred             cCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          665 SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       665 ~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                             ....+..+.+.+......++|.++++|+.|++
T Consensus       255 -------~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t  286 (568)
T PTZ00420        255 -------VTMSIDNASAPLIPHYDESTGLIYLIGKGDGN  286 (568)
T ss_pred             -------EEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence                   11233344455555556677999999998875

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=1e-25  Score=237.50  Aligned_cols=271  Identities=23%  Similarity=0.424  Sum_probs=227.2

Q ss_pred             EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      ..+.+|...|..+++.++. ++++|+.||++++|+-...                          .......+.+|.+-|
T Consensus         8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~--------------------------~~l~~~~~~~~~g~i   60 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGK--------------------------QYLETHAFEGPKGFI   60 (745)
T ss_pred             EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCc--------------------------ccccceecccCccee
Confidence            3578899999888876554 7899999999999985431                          122334566788877


Q ss_pred             EE-EEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277          425 YS-ASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (704)
Q Consensus       425 ~~-l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~  502 (704)
                      .. +++.+ ++-.|++|+.|++|.+|......+...+++|...|++++...++. +++||+|.++++|....  ....+.
T Consensus        61 ~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~--l~~~l~  137 (745)
T KOG0301|consen   61 ANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE--LVYSLQ  137 (745)
T ss_pred             eccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh--hhcccC
Confidence            77 88876 344599999999999999999999999999999999999887887 99999999999998754  555689


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~  582 (704)
                      +|...|+++..-|.+ .++|||.|.+|++|.  .++++++|.+|.+.|+.+++-+++. +++++.||.|+.|++ +|.++
T Consensus       138 gH~asVWAv~~l~e~-~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l  212 (745)
T KOG0301|consen  138 GHTASVWAVASLPEN-TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVL  212 (745)
T ss_pred             CcchheeeeeecCCC-cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCcee
Confidence            999999999998887 899999999999996  4889999999999999999997754 678999999999998 88999


Q ss_pred             eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccc
Q 005277          583 TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE  662 (704)
Q Consensus       583 ~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~  662 (704)
                      ..+.+|+.-|++++.                                  ..++..++++|+|++++||+....       
T Consensus       213 ~~~~ghtn~vYsis~----------------------------------~~~~~~Ivs~gEDrtlriW~~~e~-------  251 (745)
T KOG0301|consen  213 LEMHGHTNFVYSISM----------------------------------ALSDGLIVSTGEDRTLRIWKKDEC-------  251 (745)
T ss_pred             eeeeccceEEEEEEe----------------------------------cCCCCeEEEecCCceEEEeecCce-------
Confidence            999999999999997                                  778889999999999999998731       


Q ss_pred             cccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       663 ~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                                ...+....+.|.++.+-++|.+ ++|+.||
T Consensus       252 ----------~q~I~lPttsiWsa~~L~NgDI-vvg~SDG  280 (745)
T KOG0301|consen  252 ----------VQVITLPTTSIWSAKVLLNGDI-VVGGSDG  280 (745)
T ss_pred             ----------EEEEecCccceEEEEEeeCCCE-EEeccCc
Confidence                      2233333457999999888875 4566665

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=1.2e-26  Score=216.93  Aligned_cols=247  Identities=21%  Similarity=0.351  Sum_probs=219.7

Q ss_pred             EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      -||.+|.+.|.+..++.+....|++..|=+-+|||.-++.                            ... -..|..-|
T Consensus        53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgd----------------------------elh-sf~hkhiv  103 (334)
T KOG0278|consen   53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGD----------------------------ELH-SFEHKHIV  103 (334)
T ss_pred             EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhh----------------------------hhh-hhhhhhee
Confidence            4789999999999999999999999999999999976521                            111 12488889


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~  503 (704)
                      .+++|+.|.++|++|+.+..+||+|++..+ +...+.+|.+.|..+-|+...+.|++++.|++||+||.+++..++.+. 
T Consensus       104 k~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-  182 (334)
T KOG0278|consen  104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-  182 (334)
T ss_pred             eeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-
Confidence            999999999999999999999999998654 467788999999999999999999999999999999999999998887 


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeee
Q 005277          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~  583 (704)
                      ...+|+++..+++|.+|.++ ..++|.+||..+-..+..+. -...|.+...+|+...+++|+.|+.++.||..++..+.
T Consensus       183 ~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~  260 (334)
T KOG0278|consen  183 FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG  260 (334)
T ss_pred             cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceee
Confidence            56889999999999888776 46789999999988888774 34568999999999999999999999999999999888


Q ss_pred             ee-cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          584 PL-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       584 ~~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      .+ ++|.++|.++.|                                  +|+|...++||.||+|++|.+..++.
T Consensus       261 ~~nkgh~gpVhcVrF----------------------------------SPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  261 SYNKGHFGPVHCVRF----------------------------------SPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ecccCCCCceEEEEE----------------------------------CCCCceeeccCCCceEEEEEecCCCc
Confidence            86 899999999999                                  99999999999999999999887654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=9.9e-25  Score=200.97  Aligned_cols=258  Identities=23%  Similarity=0.328  Sum_probs=214.5

Q ss_pred             CCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec
Q 005277          338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (704)
Q Consensus       338 ~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (704)
                      ..|++.+..-..|.+.|.|.+|||+|.+||+|+.|.+|++.-++...+..+                       ..-..+
T Consensus        76 ~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~-----------------------g~dle~  132 (350)
T KOG0641|consen   76 QPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT-----------------------GHDLEF  132 (350)
T ss_pred             CCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc-----------------------Ccceee
Confidence            446777777778889999999999999999999999999987765322221                       111335


Q ss_pred             cCCccCeEEEEEcCC----CCEEEEEe-CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005277          418 QGHSGPVYSASFSPL----GDFILSSS-ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (704)
Q Consensus       418 ~~h~~~V~~l~~sp~----~~~l~s~s-~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~  492 (704)
                      .-|.+.|..++|..+    +..|++++ .|..|.+-|..+++....+.+|++.|.++ ++.+|-+|++|+.|.+|++||+
T Consensus       133 nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdl  211 (350)
T KOG0641|consen  133 NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDL  211 (350)
T ss_pred             eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEee
Confidence            569999999999654    34666554 57778888999999999999999999776 3447899999999999999999


Q ss_pred             CCCceeEEecc--C-----CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277          493 DRIQPLRIMAG--H-----LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (704)
Q Consensus       493 ~~~~~~~~~~~--~-----~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg  565 (704)
                      +-..++..+..  |     .+.|.+++..|.|++|++|-.|.++.+||++.++.++.|..|...|.|+.|||...|+.++
T Consensus       212 rv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~  291 (350)
T KOG0641|consen  212 RVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC  291 (350)
T ss_pred             eccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe
Confidence            98888877642  1     2578999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCC----eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEE
Q 005277          566 DEDGTIMMWDLASG----RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG  641 (704)
Q Consensus       566 ~~dg~I~iwdl~~~----~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasg  641 (704)
                      +.|..|++-|+...    -++.....|...+..+.|                                  +|..--+++.
T Consensus       292 syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rw----------------------------------h~~d~sfiss  337 (350)
T KOG0641|consen  292 SYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRW----------------------------------HPQDFSFISS  337 (350)
T ss_pred             cccceEEEeecccchhhcCceEEEEeccCceEEEEe----------------------------------cCccceeeec
Confidence            99999999998632    223344568888888889                                  8888889999


Q ss_pred             eCCCcEEEEeCC
Q 005277          642 SADCTVKLWDVT  653 (704)
Q Consensus       642 s~Dg~V~iWd~~  653 (704)
                      +.|.++.+|-+.
T Consensus       338 sadkt~tlwa~~  349 (350)
T KOG0641|consen  338 SADKTATLWALN  349 (350)
T ss_pred             cCcceEEEeccC
Confidence            999999999764

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=2e-27  Score=251.03  Aligned_cols=236  Identities=27%  Similarity=0.544  Sum_probs=218.4

Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~  496 (704)
                      +..|+..|.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|++...++++|+.+|+|++||++..+
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            44688889888887778899999999999999999888888899999999999999999999999999999999999999


Q ss_pred             eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                      .++.+.+|...+..+.|||-+.+.+.|+.|+.+.+||++...|...+.+|...+.++.|+|+|+|+++|++|..++|||+
T Consensus       104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~  183 (825)
T KOG0267|consen  104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL  183 (825)
T ss_pred             hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             CCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          577 ASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       577 ~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                      ..|+.+..|..|.+.+.++.|                                  +|..-++++||.|++|++||+++-.
T Consensus       184 ~agk~~~ef~~~e~~v~sle~----------------------------------hp~e~Lla~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  184 TAGKLSKEFKSHEGKVQSLEF----------------------------------HPLEVLLAPGSSDRTVRFWDLETFE  229 (825)
T ss_pred             ccccccccccccccccccccc----------------------------------CchhhhhccCCCCceeeeeccceeE
Confidence            999999999999999999998                                  8999999999999999999998754


Q ss_pred             cccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       657 ~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                      .               +....+....|.++.|+|++..+.+|...
T Consensus       230 ~---------------I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  230 V---------------ISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             E---------------eeccCCccCCceeeeecCCceeeecCchh
Confidence            3               33444557789999999999999988654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=8.1e-26  Score=229.37  Aligned_cols=279  Identities=20%  Similarity=0.368  Sum_probs=231.6

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc--CCccC
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ--GHSGP  423 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~  423 (704)
                      ..++|..-|.++++|...+.+.+|+ .|.|+|||+...+...                         .+..+.  ....-
T Consensus       414 ~tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~-------------------------PvsqLdcl~rdny  467 (705)
T KOG0639|consen  414 NTLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKS-------------------------PVSQLDCLNRDNY  467 (705)
T ss_pred             hhhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCC-------------------------ccccccccCcccc
Confidence            3457777888999999999999996 7889999998632111                         111111  12356


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      |.++..+|||+.|++|+.-.++.|||+........  +....-.+..++.+||.+..++++.||.|.|||+.+...++.|
T Consensus       468 iRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf  547 (705)
T KOG0639|consen  468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF  547 (705)
T ss_pred             eeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc
Confidence            88999999999999999999999999987655433  2233345778999999999999999999999999999999999


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~  581 (704)
                      .+|.+.+.||..+++|..|.||+-|.+||.||+++++.+... .....|.++..+|++.||++|-.++.+.|..... ..
T Consensus       548 qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~  625 (705)
T KOG0639|consen  548 QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PE  625 (705)
T ss_pred             cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCC-cc
Confidence            999999999999999999999999999999999999876543 3467899999999999999999999998887543 33


Q ss_pred             eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277          582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT  661 (704)
Q Consensus       582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~  661 (704)
                      ...+..|.++|.++.|                                  .+.|+++++.|.|+-+..|...-+..+...
T Consensus       626 kyqlhlheScVLSlKF----------------------------------a~cGkwfvStGkDnlLnawrtPyGasiFqs  671 (705)
T KOG0639|consen  626 KYQLHLHESCVLSLKF----------------------------------AYCGKWFVSTGKDNLLNAWRTPYGASIFQS  671 (705)
T ss_pred             ceeecccccEEEEEEe----------------------------------cccCceeeecCchhhhhhccCccccceeec
Confidence            4556779999999999                                  999999999999999999999887654222


Q ss_pred             ccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          662 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       662 ~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                                      ...++|.+...|.|++++++|+.|+
T Consensus       672 ----------------kE~SsVlsCDIS~ddkyIVTGSGdk  696 (705)
T KOG0639|consen  672 ----------------KESSSVLSCDISFDDKYIVTGSGDK  696 (705)
T ss_pred             ----------------cccCcceeeeeccCceEEEecCCCc
Confidence                            2357899999999999999999884

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=3.6e-25  Score=221.66  Aligned_cols=247  Identities=21%  Similarity=0.355  Sum_probs=217.2

Q ss_pred             EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      +.++.+|.-.|+.+.|+|+...+++++.|..|+||.....                            ........|.++
T Consensus       254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~----------------------------s~~~~~~~h~~~  305 (506)
T KOG0289|consen  254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS----------------------------SEPTSSRPHEEP  305 (506)
T ss_pred             hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc----------------------------cCcccccccccc
Confidence            4468899999999999999999999999999999997641                            233456679999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec--CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      |+.+..+|.|.||++++.||+..+.|++++.++.....  ..-.+++.+|+|||..|.+|..||.+++||+..+..+..|
T Consensus       306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F  385 (506)
T KOG0289|consen  306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF  385 (506)
T ss_pred             ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC
Confidence            99999999999999999999999999999998776653  2345899999999999999999999999999999999999


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC-CCCEEEEEEecCCCEEEEEeCCCeEEEEeCC--C
Q 005277          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-RSMILSLAMSPDGRYMASGDEDGTIMMWDLA--S  578 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~--~  578 (704)
                      .+|.++|..++|+.||-||++++.|+.|++||+|.-+...++.-. ...+.++.|.+.|.+|+.++.|=.|++++-.  +
T Consensus       386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~  465 (506)
T KOG0289|consen  386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS  465 (506)
T ss_pred             CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence            999999999999999999999999999999999988877777543 2379999999999999999888777777633  5


Q ss_pred             CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277          579 GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV  652 (704)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~  652 (704)
                      +..+..+..|.+..+.+.|                                  .....+++++|.|..++++.+
T Consensus       466 W~~~~~~~~~sg~st~v~F----------------------------------g~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  466 WTEIKELADHSGLSTGVRF----------------------------------GEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ceeeehhhhcccccceeee----------------------------------cccceEEeeccchhheEEeec
Confidence            6788888889988899988                                  778889999999999988764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=1e-25  Score=224.50  Aligned_cols=257  Identities=22%  Similarity=0.333  Sum_probs=219.2

Q ss_pred             cCeEeecCCCCCCeE-EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277          329 RNRVHLSSAALPSVS-FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~-~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (704)
                      ...|++|........ .-++.+..++|+++.|.++++.+++++.|+.+++|+++.                         
T Consensus       196 Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~-------------------------  250 (459)
T KOG0288|consen  196 DRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS-------------------------  250 (459)
T ss_pred             hhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc-------------------------
Confidence            345566654433322 234567778899999999999999999999999999876                         


Q ss_pred             CCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeE
Q 005277          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (704)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i  487 (704)
                         .+...++.||++.|+++.|......+++|+.|.+|++||+....|..++.. ...+.+|..+  +..+++|-.|++|
T Consensus       251 ---~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~Dkkv  324 (459)
T KOG0288|consen  251 ---LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKV  324 (459)
T ss_pred             ---hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccce
Confidence               456677889999999999998777799999999999999999888777653 4456677765  6679999999999


Q ss_pred             EEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC----CCCEEEEEEecCCCEEE
Q 005277          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH----RSMILSLAMSPDGRYMA  563 (704)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h----~~~i~~l~~spdg~~l~  563 (704)
                      ++||.+...+.+....+. .|+++..++++..|.+.+.|.++.+.|+++......+...    ....+.+.|||++.|++
T Consensus       325 RfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva  403 (459)
T KOG0288|consen  325 RFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA  403 (459)
T ss_pred             EEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence            999999999999988764 9999999999999999999999999999999888777532    23478899999999999


Q ss_pred             EEeCCCeEEEEeCCCCeeeeeecCCCc--eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEE
Q 005277          564 SGDEDGTIMMWDLASGRCVTPLMGHTS--CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG  641 (704)
Q Consensus       564 sg~~dg~I~iwdl~~~~~~~~~~~h~~--~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasg  641 (704)
                      +|+.||.|+||++.++++...+.....  .|+++.|                                  +|.|..++++
T Consensus       404 AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W----------------------------------~~sG~~Llsa  449 (459)
T KOG0288|consen  404 AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW----------------------------------NPSGSGLLSA  449 (459)
T ss_pred             eccCCCcEEEEEccCceEEEEeccCCCCcceEEEEE----------------------------------cCCCchhhcc
Confidence            999999999999999999988876554  5999999                                  9999999999


Q ss_pred             eCCCcEEEEe
Q 005277          642 SADCTVKLWD  651 (704)
Q Consensus       642 s~Dg~V~iWd  651 (704)
                      +.++.+.+|.
T Consensus       450 dk~~~v~lW~  459 (459)
T KOG0288|consen  450 DKQKAVTLWT  459 (459)
T ss_pred             cCCcceEecC
Confidence            9999999993

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.2e-25  Score=206.20  Aligned_cols=248  Identities=24%  Similarity=0.449  Sum_probs=205.3

Q ss_pred             eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      ..|.+.|..+...--|+.||++++|++|+|+.+....                         .......+.||++||..+
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~-------------------------~s~ll~~L~Gh~GPVwqv   62 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG-------------------------QSKLLAELTGHSGPVWKV   62 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC-------------------------CceeeeEecCCCCCeeEE
Confidence            4577778888877789999999999999999987522                         135667899999999999


Q ss_pred             EEcC--CCCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEEEEECCCC---cee
Q 005277          428 SFSP--LGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRI---QPL  498 (704)
Q Consensus       428 ~~sp--~~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~lwd~~~~---~~~  498 (704)
                      +|..  .|.+|++|+.||.|.||.-..++  ....+..|...|++|+|.|+  |-.|++++.||.|.+.+.+..   ...
T Consensus        63 ~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~  142 (299)
T KOG1332|consen   63 AWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS  142 (299)
T ss_pred             eecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch
Confidence            9976  78999999999999999988763  34556689999999999995  667999999999999998764   234


Q ss_pred             EEeccCCCCeeEEEEcCC---C-----------CEEEEEECCCcEEEEeCCCCc--EEEEeecCCCCEEEEEEecCC---
Q 005277          499 RIMAGHLSDVDCVRWHIN---C-----------NYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDG---  559 (704)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~---~-----------~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~i~~l~~spdg---  559 (704)
                      ++...|.-.|++++|.|.   |           +.|++|+.|..|+||+..++.  .-+.+.+|.+.|+.++|.|.-   
T Consensus       143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~  222 (299)
T KOG1332|consen  143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP  222 (299)
T ss_pred             hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC
Confidence            556789999999999985   4           569999999999999998763  334578999999999999953   


Q ss_pred             -CEEEEEeCCCeEEEEeCCCC---eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC
Q 005277          560 -RYMASGDEDGTIMMWDLASG---RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG  635 (704)
Q Consensus       560 -~~l~sg~~dg~I~iwdl~~~---~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  635 (704)
                       .+|++++.||++.||-.+..   -....+......++.++|                                  |..|
T Consensus       223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSW----------------------------------S~sG  268 (299)
T KOG1332|consen  223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSW----------------------------------SLSG  268 (299)
T ss_pred             ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEE----------------------------------eccc
Confidence             58999999999999986622   112233445678999999                                  9999


Q ss_pred             CEEEEEeCCCcEEEEeCCC
Q 005277          636 SLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       636 ~~lasgs~Dg~V~iWd~~~  654 (704)
                      ++|++++.|+.|.+|.-..
T Consensus       269 n~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  269 NILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             cEEEEecCCcEEEEEEeCC
Confidence            9999999999999997554

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=7.6e-25  Score=210.54  Aligned_cols=253  Identities=22%  Similarity=0.425  Sum_probs=211.9

Q ss_pred             CeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC
Q 005277          341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (704)
Q Consensus       341 ~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  420 (704)
                      .....|+..|-+.|+++.|+|...+|++|+.|++|++||+.+...                         ++..+.+ ..
T Consensus       162 hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa-------------------------KrA~K~~-qd  215 (430)
T KOG0640|consen  162 HPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA-------------------------KRAFKVF-QD  215 (430)
T ss_pred             CceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHH-------------------------HHHHHHh-hc
Confidence            344568899999999999999999999999999999999875211                         1122222 24


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe---ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~  497 (704)
                      ..+|.+++|+|.|.+|+.|....++++||+++.++...-   ..|++.|+++.+++.|++.++|+.||.|++||--..++
T Consensus       216 ~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC  295 (430)
T KOG0640|consen  216 TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC  295 (430)
T ss_pred             cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH
Confidence            568999999999999999999999999999999887654   36899999999999999999999999999999988888


Q ss_pred             eEEec-cCC-CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC-----CEEEEEEecCCCEEEEEe-CCC
Q 005277          498 LRIMA-GHL-SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-----MILSLAMSPDGRYMASGD-EDG  569 (704)
Q Consensus       498 ~~~~~-~~~-~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-----~i~~l~~spdg~~l~sg~-~dg  569 (704)
                      ++.+. .|. +.|.+..|..||+|+++.+.|..+++|.+.+|+++..+.|-..     --+...|+....+++.-. ..+
T Consensus       296 v~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~  375 (430)
T KOG0640|consen  296 VRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASN  375 (430)
T ss_pred             HHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccC
Confidence            88875 344 5689999999999999999999999999999999999876421     224456776667766544 356


Q ss_pred             eEEEEeCCCCeeeeee-cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEE
Q 005277          570 TIMMWDLASGRCVTPL-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVK  648 (704)
Q Consensus       570 ~I~iwdl~~~~~~~~~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~  648 (704)
                      .+.-||.+++..+..+ .+|++.+..+.-                                  ||.+..+++||.|-.++
T Consensus       376 slcsWdaRtadr~~l~slgHn~a~R~i~H----------------------------------SP~~p~FmTcsdD~raR  421 (430)
T KOG0640|consen  376 SLCSWDARTADRVALLSLGHNGAVRWIVH----------------------------------SPVEPAFMTCSDDFRAR  421 (430)
T ss_pred             ceeeccccchhhhhhcccCCCCCceEEEe----------------------------------CCCCCceeeecccceee
Confidence            8999999998777665 589999998887                                  99999999999999999


Q ss_pred             EEeCC
Q 005277          649 LWDVT  653 (704)
Q Consensus       649 iWd~~  653 (704)
                      +|--.
T Consensus       422 FWyrr  426 (430)
T KOG0640|consen  422 FWYRR  426 (430)
T ss_pred             eeeec
Confidence            99754

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.8e-24  Score=205.33  Aligned_cols=248  Identities=22%  Similarity=0.413  Sum_probs=199.6

Q ss_pred             eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      .+|.+-|.|+.|.+.|+.+|+|+.|++|+|||.+.                        ..+.......+..|.+.|..+
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~------------------------~s~~W~~Ts~Wrah~~Si~rV   65 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTS------------------------DSGTWSCTSSWRAHDGSIWRV   65 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccC------------------------CCCceEEeeeEEecCCcEEEE
Confidence            47788899999999999999999999999999754                        223455667788999999999


Q ss_pred             EEcC--CCCEEEEEeCCCeEEEEeCC---------CCceeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEEECCC
Q 005277          428 SFSP--LGDFILSSSADTTIRLWSTK---------LNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDR  494 (704)
Q Consensus       428 ~~sp--~~~~l~s~s~Dg~I~lwd~~---------~~~~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lwd~~~  494 (704)
                      .|.+  -|+.++++|.|+++.||.-.         ......++......|++|+|.|  -|-.+|+++.||++|||+.-.
T Consensus        66 ~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d  145 (361)
T KOG2445|consen   66 VWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD  145 (361)
T ss_pred             EecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence            9976  47899999999999999752         1233456667788999999999  578899999999999998654


Q ss_pred             Cce------eEEec-------cCCCCeeEEEEcCC---CCEEEEEECC-----CcEEEEeCCCC----cEEEEeecCCCC
Q 005277          495 IQP------LRIMA-------GHLSDVDCVRWHIN---CNYIATGSSD-----KTVRLWDVSSG----ECVRIFIGHRSM  549 (704)
Q Consensus       495 ~~~------~~~~~-------~~~~~V~~v~~~p~---~~~l~tgs~d-----g~I~iwd~~~~----~~~~~~~~h~~~  549 (704)
                      .-.      ...+.       .+..+..|+.|+|.   ..+||+|+.+     +.+.||....+    ..+..+.+|..+
T Consensus       146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp  225 (361)
T KOG2445|consen  146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP  225 (361)
T ss_pred             ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence            221      11122       46677889999974   5788998866     57889876543    234556799999


Q ss_pred             EEEEEEecC-C---CEEEEEeCCCeEEEEeCCCC--------------------eeeeeecCCCceeeeeeeeeeehccc
Q 005277          550 ILSLAMSPD-G---RYMASGDEDGTIMMWDLASG--------------------RCVTPLMGHTSCVWTLAYRFLLLVTN  605 (704)
Q Consensus       550 i~~l~~spd-g---~~l~sg~~dg~I~iwdl~~~--------------------~~~~~~~~h~~~V~sl~~~~~~~~~~  605 (704)
                      |+.++|.|+ |   ..||+++.|| |+||.+...                    +.+..+..|.+.|+.+.|        
T Consensus       226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w--------  296 (361)
T KOG2445|consen  226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW--------  296 (361)
T ss_pred             ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE--------
Confidence            999999995 3   4799999999 999998731                    345567789999999999        


Q ss_pred             cccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          606 AYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                                                +-.|.+|++.|.||+||+|...-
T Consensus       297 --------------------------NmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  297 --------------------------NMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             --------------------------eeeeeEEeecCCCceeeehhhhh
Confidence                                      77899999999999999998654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=7.2e-25  Score=204.66  Aligned_cols=244  Identities=24%  Similarity=0.346  Sum_probs=198.3

Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEEE
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWS  491 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lwd  491 (704)
                      -..|...|..+...--|+.|+||+.|++|+|+.++...   .+..+.+|.+|||.++|..  .|.+||+++.||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            34688888887777779999999999999999998654   5778899999999999976  899999999999999999


Q ss_pred             CCCCc--eeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCC---cEEEEeecCCCCEEEEEEecC---C--
Q 005277          492 MDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMSPD---G--  559 (704)
Q Consensus       492 ~~~~~--~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~i~~l~~spd---g--  559 (704)
                      -.+++  ....+..|...|++|+|.|.  |-.|+++++||.|.+.++++.   ...+....|.-.|++++|.|-   |  
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            88764  34456689999999999985  678999999999999998754   223445689999999999995   5  


Q ss_pred             ---------CEEEEEeCCCeEEEEeCCCCe--eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277          560 ---------RYMASGDEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF  628 (704)
Q Consensus       560 ---------~~l~sg~~dg~I~iwdl~~~~--~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (704)
                               +.|++|+.|..|+||+..+++  .-+++.+|.+-|..++|.+..                           
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~---------------------------  219 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSV---------------------------  219 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcccc---------------------------
Confidence                     579999999999999998763  345689999999999993210                           


Q ss_pred             cccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          629 GCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       629 ~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                         .--...||++|.||+|.||-.......         ..   ...+.....+++.++||..|.+|++++.|+
T Consensus       220 ---gl~~s~iAS~SqDg~viIwt~~~e~e~---------wk---~tll~~f~~~~w~vSWS~sGn~LaVs~GdN  278 (299)
T KOG1332|consen  220 ---GLPKSTIASCSQDGTVIIWTKDEEYEP---------WK---KTLLEEFPDVVWRVSWSLSGNILAVSGGDN  278 (299)
T ss_pred             ---CCCceeeEEecCCCcEEEEEecCccCc---------cc---ccccccCCcceEEEEEeccccEEEEecCCc
Confidence               112358999999999999988743221         11   223334667899999999999999998875

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=6.9e-24  Score=214.67  Aligned_cols=255  Identities=20%  Similarity=0.346  Sum_probs=206.9

Q ss_pred             ceeeccCCccCeEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCce----------eEEeecCCcCeeEEEEcCC-CCEEEE
Q 005277          413 SYTLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNAN----------LVCYKGHNYPVWDVQFNPQ-GHYFAS  480 (704)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~Dg~I~lwd~~~~~~----------~~~~~~h~~~V~~v~~sp~-~~~l~s  480 (704)
                      .+.....|.+.|+.+.+-|++.. +++.+..+.|.|||......          -..+.+|...-.+++|++. .-++++
T Consensus       116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls  195 (422)
T KOG0264|consen  116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS  195 (422)
T ss_pred             EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence            34445679999999999998875 45778889999999764322          2367889887889999994 457999


Q ss_pred             EeCCCeEEEEECCCC-------ceeEEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCC--CCcEEEEeecCCCCE
Q 005277          481 SSHDRTARIWSMDRI-------QPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVS--SGECVRIFIGHRSMI  550 (704)
Q Consensus       481 gs~dg~i~lwd~~~~-------~~~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~i  550 (704)
                      |+.|++|++||+...       .+...+.+|...|..++|||- ...+++++.|+.+.|||+|  +.++.....+|.+.|
T Consensus       196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v  275 (422)
T KOG0264|consen  196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV  275 (422)
T ss_pred             ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence            999999999999643       356778899999999999984 5678889999999999999  566777788999999


Q ss_pred             EEEEEec-CCCEEEEEeCCCeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277          551 LSLAMSP-DGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF  628 (704)
Q Consensus       551 ~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (704)
                      .|++|+| ++..||+|+.|++|.+||+|+. +++.++.+|...|..+.|                               
T Consensus       276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~W-------------------------------  324 (422)
T KOG0264|consen  276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEW-------------------------------  324 (422)
T ss_pred             eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEe-------------------------------
Confidence            9999999 5667889999999999999974 578889999999999999                               


Q ss_pred             cccCCC-CCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEe-ecCC
Q 005277          629 GCASCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG-ALSK  702 (704)
Q Consensus       629 ~~~s~~-g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~g-s~dg  702 (704)
                         ||. ..+||+++.|+.+.|||+..-..... .+........++....+|...|..++|+|....++++ +.|+
T Consensus       325 ---SPh~etvLASSg~D~rl~vWDls~ig~eq~-~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN  396 (422)
T KOG0264|consen  325 ---SPHNETVLASSGTDRRLNVWDLSRIGEEQS-PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN  396 (422)
T ss_pred             ---CCCCCceeEecccCCcEEEEeccccccccC-hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence               776 46889999999999999987554332 1112233446678889999999999999988765544 4443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=6.3e-24  Score=214.48  Aligned_cols=278  Identities=17%  Similarity=0.268  Sum_probs=229.4

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      ..+++|+|+.|+|...+|++|+.||.++||.++....                          ..++.+.--..||.+.+
T Consensus       211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--------------------------~~lqS~~l~~fPi~~a~  264 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--------------------------PKLQSIHLEKFPIQKAE  264 (514)
T ss_pred             cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccC--------------------------hhheeeeeccCccceee
Confidence            3457899999999999999999999999999986321                          12333333467999999


Q ss_pred             EcCCCC-EEEEEeCCCeEEEEeCCCCceeE--EeecCC-cCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277          429 FSPLGD-FILSSSADTTIRLWSTKLNANLV--CYKGHN-YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       429 ~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~--~~~~h~-~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      |+|+|. .+++++....++.||+.+.+...  ...++. ..+.....++++++++..|..|.|.+....+++.+..+. -
T Consensus       265 f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-i  343 (514)
T KOG2055|consen  265 FAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-I  343 (514)
T ss_pred             ecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-e
Confidence            999999 88899999999999998876533  233443 357788899999999999999999999999998888877 5


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC-CEEEEEEecCCCEEEEEeCCCeEEEEeCCC-----
Q 005277          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLAS-----  578 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~~l~sg~~dg~I~iwdl~~-----  578 (704)
                      .+.|..++|+.+++.|++.+.+|.|.+||++...+++.+....+ .-+++|.|++|.|||+|+..|.|.|||..+     
T Consensus       344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~  423 (514)
T KOG2055|consen  344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST  423 (514)
T ss_pred             ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC
Confidence            67899999999999999999999999999999999999875432 346788889999999999999999999654     


Q ss_pred             -CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe--CCCcEEEEeCCCC
Q 005277          579 -GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS--ADCTVKLWDVTTS  655 (704)
Q Consensus       579 -~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs--~Dg~V~iWd~~~~  655 (704)
                       .+++..+..-...|+++.|                                  ++++.+||.+|  .+..+++-.+.+.
T Consensus       424 ~PkPik~~dNLtt~Itsl~F----------------------------------n~d~qiLAiaS~~~knalrLVHvPS~  469 (514)
T KOG2055|consen  424 NPKPIKTVDNLTTAITSLQF----------------------------------NHDAQILAIASRVKKNALRLVHVPSC  469 (514)
T ss_pred             CCCchhhhhhhheeeeeeee----------------------------------CcchhhhhhhhhccccceEEEeccce
Confidence             4677777777788999999                                  99999998777  5678999998876


Q ss_pred             ccccccccccCccccccccccCC---CCcCeEEEEEccCCcEEEEeecCC
Q 005277          656 TKVLKTEEKSGTNRLRSLKTLPT---KSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       656 ~~~~~~~~~~~~~~~~~l~~~~~---~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      ...               ..+|+   .-+.|+||+|||.+-+||+|...|
T Consensus       470 TVF---------------sNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g  504 (514)
T KOG2055|consen  470 TVF---------------SNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG  504 (514)
T ss_pred             eee---------------ccCCCCCCcccceEEEEecCCCceEEeecCCC
Confidence            432               23333   335689999999999999998776

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.8e-23  Score=227.13  Aligned_cols=273  Identities=18%  Similarity=0.270  Sum_probs=228.2

Q ss_pred             eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      ..|..+.+.++|.|+|.+|.+++.||.|++|+......                        ....   ..-|...|.++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------------~P~t---i~~~g~~v~~i   62 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------------EPET---IDISGELVSSI   62 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------------CCch---hhccCceeEEE
Confidence            35788899999999999999999999999998654110                        0011   11166778888


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC
Q 005277          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD  507 (704)
Q Consensus       428 ~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~  507 (704)
                      +..  ..+|++|+.+++|.+|.+.++..-..+...+.++.+++|+-+|.++|.||.|-.|++.++........+.+|..+
T Consensus        63 a~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap  140 (933)
T KOG1274|consen   63 ACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP  140 (933)
T ss_pred             eec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc
Confidence            765  558999999999999999998877667777889999999999999999999999999999999999999999999


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC--------CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (704)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--------~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~  579 (704)
                      |.++.|+|++++||+.+.||.|++||+.++.+..++.+-        ...+..++|+|+|..++..+.|+.|++|+..++
T Consensus       141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w  220 (933)
T KOG1274|consen  141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW  220 (933)
T ss_pred             eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence            999999999999999999999999999998877665431        345678999999888999999999999999999


Q ss_pred             eeeeeecC--CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          580 RCVTPLMG--HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       580 ~~~~~~~~--h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      .....+..  +...+..+.|                                  +|.|.+||+++.||.|.|||+++-..
T Consensus       221 e~~f~Lr~~~~ss~~~~~~w----------------------------------sPnG~YiAAs~~~g~I~vWnv~t~~~  266 (933)
T KOG1274|consen  221 ELQFKLRDKLSSSKFSDLQW----------------------------------SPNGKYIAASTLDGQILVWNVDTHER  266 (933)
T ss_pred             eeheeecccccccceEEEEE----------------------------------cCCCcEEeeeccCCcEEEEecccchh
Confidence            88887754  3445888999                                  99999999999999999999987221


Q ss_pred             ccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          658 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       658 ~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                                         ......|.+++|-|+...+..-...|
T Consensus       267 -------------------~~~~~~Vc~~aw~p~~n~it~~~~~g  292 (933)
T KOG1274|consen  267 -------------------HEFKRAVCCEAWKPNANAITLITALG  292 (933)
T ss_pred             -------------------ccccceeEEEecCCCCCeeEEEeecc
Confidence                               23345689999998887665544433

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=3.3e-24  Score=226.11  Aligned_cols=252  Identities=23%  Similarity=0.398  Sum_probs=210.6

Q ss_pred             eEeecCCCCCCeEE-EEEeeCCCCEEE-EEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277          331 RVHLSSAALPSVSF-YTFINTHNGLNC-ASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (704)
Q Consensus       331 ~~~l~~~~~p~~~~-~~~~~~~~~V~~-~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (704)
                      ++++|......... ..+.+|.+-|.+ +++-+ ++-.|++|+.|++|.+|.+..                         
T Consensus        36 t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~-------------------------   90 (745)
T KOG0301|consen   36 TVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ-------------------------   90 (745)
T ss_pred             ceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC-------------------------
Confidence            45566553332222 345567776776 77765 455699999999999999875                         


Q ss_pred             CCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeE
Q 005277          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (704)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i  487 (704)
                         ..+...+.||...|.|++...++. ++|||+|.|+++|-.  +++...+.+|+.+||++..-|.+ .++|||.|++|
T Consensus        91 ---~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI  163 (745)
T KOG0301|consen   91 ---AEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTI  163 (745)
T ss_pred             ---CCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCccee
Confidence               346677899999999999887777 999999999999987  46666789999999999999988 89999999999


Q ss_pred             EEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      ++|.-  ++.++.|.+|.+.|+.+++-|++ .+++++.||.|++|++ +|.++..+.+|.+.|.++...+++..++++++
T Consensus       164 klWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE  239 (745)
T KOG0301|consen  164 KLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGE  239 (745)
T ss_pred             eeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecC
Confidence            99986  66889999999999999998764 5788889999999999 89999999999999999998889999999999


Q ss_pred             CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcE
Q 005277          568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV  647 (704)
Q Consensus       568 dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V  647 (704)
                      |++++||+..  .+.+.+.-....||+..+                                  -++| -|++|+.||.|
T Consensus       240 DrtlriW~~~--e~~q~I~lPttsiWsa~~----------------------------------L~Ng-DIvvg~SDG~V  282 (745)
T KOG0301|consen  240 DRTLRIWKKD--ECVQVITLPTTSIWSAKV----------------------------------LLNG-DIVVGGSDGRV  282 (745)
T ss_pred             CceEEEeecC--ceEEEEecCccceEEEEE----------------------------------eeCC-CEEEeccCceE
Confidence            9999999976  777777766668888876                                  4455 47788889999


Q ss_pred             EEEeCCCC
Q 005277          648 KLWDVTTS  655 (704)
Q Consensus       648 ~iWd~~~~  655 (704)
                      |||.....
T Consensus       283 rVfT~~k~  290 (745)
T KOG0301|consen  283 RVFTVDKD  290 (745)
T ss_pred             EEEEeccc
Confidence            99998743

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.7e-23  Score=202.13  Aligned_cols=280  Identities=18%  Similarity=0.239  Sum_probs=208.6

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      ++.+|.+.|+|++||.||+.||+++.|+.|+||++.......                       .+.++.... -+.-+
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e-----------------------Hr~~R~nve-~dhpT  136 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE-----------------------HRCIRQNVE-YDHPT  136 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh-----------------------hhHhhcccc-CCCce
Confidence            367999999999999999999999999999999998632221                       111111111 12357


Q ss_pred             EEEEcCCCCEEE-EEeCCCeEEEEeCCCCc---ee---------EEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005277          426 SASFSPLGDFIL-SSSADTTIRLWSTKLNA---NL---------VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (704)
Q Consensus       426 ~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~---~~---------~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~  492 (704)
                      .+.|+||-+-++ ++-...++++|.+...+   ..         ..-+.|.-+|.++-....+.++++++.|..|.+|++
T Consensus       137 ~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~l  216 (420)
T KOG2096|consen  137 RVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDL  216 (420)
T ss_pred             EEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEec
Confidence            789999987554 55566689999765321   11         111236667777778888999999999999999999


Q ss_pred             CCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC---CC-----cEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---SG-----ECVRIFIGHRSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~---~~-----~~~~~~~~h~~~i~~l~~spdg~~l~s  564 (704)
                      . ++.+..+......-...+.+|+|+++++++-.-.|.+|.+-   .|     ..+..+.||...|..++|+|+...+++
T Consensus       217 k-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt  295 (420)
T KOG2096|consen  217 K-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT  295 (420)
T ss_pred             C-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEE
Confidence            8 78888887766677778899999999999999999999873   22     234567899999999999999999999


Q ss_pred             EeCCCeEEEEeCCCC-------eeeeeec--CC--C-ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277          565 GDEDGTIMMWDLASG-------RCVTPLM--GH--T-SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS  632 (704)
Q Consensus       565 g~~dg~I~iwdl~~~-------~~~~~~~--~h--~-~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  632 (704)
                      .+.||+++|||..-.       +.++...  -|  . .++ .+..                                  +
T Consensus       296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~l----------------------------------s  340 (420)
T KOG2096|consen  296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLEL----------------------------------S  340 (420)
T ss_pred             EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEe----------------------------------C
Confidence            999999999997532       1111110  01  1 122 3333                                  9


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277          633 CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       633 ~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~  700 (704)
                      |+|+.||.... ..++++..++++....              .-..|.+.|.+++|+++|+++++++.
T Consensus       341 P~g~~lA~s~g-s~l~~~~se~g~~~~~--------------~e~~h~~~Is~is~~~~g~~~atcGd  393 (420)
T KOG2096|consen  341 PSGDSLAVSFG-SDLKVFASEDGKDYPE--------------LEDIHSTTISSISYSSDGKYIATCGD  393 (420)
T ss_pred             CCCcEEEeecC-CceEEEEcccCccchh--------------HHHhhcCceeeEEecCCCcEEeeecc
Confidence            99999887764 4899999988764321              12357889999999999999999875

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=1.3e-24  Score=221.71  Aligned_cols=243  Identities=24%  Similarity=0.386  Sum_probs=191.3

Q ss_pred             ceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eEEe-ecCCcCeeEEEEcCCCCEEEEEeCCCeE
Q 005277          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN----LVCY-KGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (704)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~----~~~~-~~h~~~V~~v~~sp~~~~l~sgs~dg~i  487 (704)
                      ....+.+|+..|.++++.|.|-.|++||.|.+|++||+.....    ...+ ......|.+++|++.|..|++.+....+
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            4456789999999999999999999999999999999875432    1122 2335679999999999999999988999


Q ss_pred             EEEECCCCceeEE------------eccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcE-EEEee-----cCCC
Q 005277          488 RIWSMDRIQPLRI------------MAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGEC-VRIFI-----GHRS  548 (704)
Q Consensus       488 ~lwd~~~~~~~~~------------~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~-~~~~~-----~h~~  548 (704)
                      +|+|-+....+..            -.||...++|.+|||. ...+++++.||++|+||+...+. ..++.     +..-
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            9999876544332            3589999999999995 56789999999999999976443 33332     2344


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee---eeeecCCCc--eeeeeeeeeeehccccccccccccccceeeeee
Q 005277          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRC---VTPLMGHTS--CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL  623 (704)
Q Consensus       549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~---~~~~~~h~~--~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (704)
                      ++++++|+|||++||+|+.||.|.+|+.++...   ...-.+|..  .|+++.|                          
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F--------------------------  372 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF--------------------------  372 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe--------------------------
Confidence            789999999999999999999999999865422   233357876  9999999                          


Q ss_pred             eEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          624 TIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       624 ~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                              |++|++|++-|.|+++++||+...+.......           -+ ...-+-+.++|||+.+++++|+.-
T Consensus       373 --------S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~t-----------gL-~t~~~~tdc~FSPd~kli~TGtS~  430 (641)
T KOG0772|consen  373 --------SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRT-----------GL-PTPFPGTDCCFSPDDKLILTGTSA  430 (641)
T ss_pred             --------ccccchhhhccCCCceeeeeccccccchhhhc-----------CC-CccCCCCccccCCCceEEEecccc
Confidence                    99999999999999999999998765432211           11 112245678999999999999764

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.4e-24  Score=216.23  Aligned_cols=221  Identities=28%  Similarity=0.457  Sum_probs=194.3

Q ss_pred             CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC------
Q 005277          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD------  493 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~------  493 (704)
                      -.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-.+|+++.|+-||.+|+|||.||.|.+|.+-      
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~  159 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD  159 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999863      


Q ss_pred             ---CCceeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC
Q 005277          494 ---RIQPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (704)
Q Consensus       494 ---~~~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d  568 (704)
                         +..+++.+..|.-+|+.+...+.  ..+++|+|.|.+|++||+..|..+..+. ....+.+++.+|-++.+++|+.+
T Consensus       160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~  238 (476)
T KOG0646|consen  160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEE  238 (476)
T ss_pred             cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCc
Confidence               45688999999999999988754  4789999999999999999999888774 56789999999999999999999


Q ss_pred             CeEEEEeCCCC----------------eeeeeecCCCc--eeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277          569 GTIMMWDLASG----------------RCVTPLMGHTS--CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC  630 (704)
Q Consensus       569 g~I~iwdl~~~----------------~~~~~~~~h~~--~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (704)
                      |.|.+.++...                ..+..+.||.+  .|++++.                                 
T Consensus       239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai---------------------------------  285 (476)
T KOG0646|consen  239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI---------------------------------  285 (476)
T ss_pred             ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE---------------------------------
Confidence            99999887543                23455678887  8999998                                 


Q ss_pred             cCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc
Q 005277          631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR  690 (704)
Q Consensus       631 ~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~  690 (704)
                       +.||.+|++|+.||.|+|||+.+.+.               +.++.+..+||+.+.+.|
T Consensus       286 -s~DgtlLlSGd~dg~VcvWdi~S~Q~---------------iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  286 -STDGTLLLSGDEDGKVCVWDIYSKQC---------------IRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             -ecCccEEEeeCCCCCEEEEecchHHH---------------HHHHhhhccccceeEeec
Confidence             99999999999999999999988654               455555677888888855

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.9e-24  Score=204.20  Aligned_cols=272  Identities=21%  Similarity=0.356  Sum_probs=205.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (704)
                      -.|+.||+.|.+||+|+.||.|.|||+.+                            ....+.+.+|..+|.+++||++|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T----------------------------~~iar~lsaH~~pi~sl~WS~dg   77 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDT----------------------------FRIARMLSAHVRPITSLCWSRDG   77 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccc----------------------------cchhhhhhccccceeEEEecCCC
Confidence            78999999999999999999999999987                            23456688999999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEeccCC----CCe
Q 005277          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMAGHL----SDV  508 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~----~~V  508 (704)
                      +.|+|+|.|..|.+||+..|.++..++ ..++||...|+|.. +.+++.-.+....+-++..+.....-....    ..-
T Consensus        78 r~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa  156 (405)
T KOG1273|consen   78 RKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSA  156 (405)
T ss_pred             CEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccc
Confidence            999999999999999999999998887 67899999999943 444444445556666665422211111111    122


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-CCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC----e--e
Q 005277          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDLASG----R--C  581 (704)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~----~--~  581 (704)
                      .+..|++.|+||++|...|.+.++|..+-+++..++-.. ..|.++.++..|++|+..+.|..|+.|+++.-    +  .
T Consensus       157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e  236 (405)
T KOG1273|consen  157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE  236 (405)
T ss_pred             ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence            345688999999999999999999999999999887666 78999999999999999999999999998621    1  1


Q ss_pred             eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC-CCcEEEEeCCCCccccc
Q 005277          582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA-DCTVKLWDVTTSTKVLK  660 (704)
Q Consensus       582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~-Dg~V~iWd~~~~~~~~~  660 (704)
                      +........-|..+.|+                             .+|+|.+|.+++.|+. -..++||.-..|..+  
T Consensus       237 ~e~~~K~qDvVNk~~Wk-----------------------------~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV--  285 (405)
T KOG1273|consen  237 VEPEHKLQDVVNKLQWK-----------------------------KCCFSGDGEYVCAGSARAHALYIWEKSIGSLV--  285 (405)
T ss_pred             cChhHHHHHHHhhhhhh-----------------------------heeecCCccEEEeccccceeEEEEecCCccee--
Confidence            11111112455666662                             3466889999988774 468999998887543  


Q ss_pred             cccccCccccccccccCCCC-cCeEEEEEccCCcEEEEe
Q 005277          661 TEEKSGTNRLRSLKTLPTKS-TPVYSLQFSRRNLLFAAG  698 (704)
Q Consensus       661 ~~~~~~~~~~~~l~~~~~~~-~~V~~l~fs~~g~~La~g  698 (704)
                                   +.+.+.. .....|.|+|--.++++-
T Consensus       286 -------------KILhG~kgE~l~DV~whp~rp~i~si  311 (405)
T KOG1273|consen  286 -------------KILHGTKGEELLDVNWHPVRPIIASI  311 (405)
T ss_pred             -------------eeecCCchhheeecccccceeeeeec
Confidence                         3333333 445667777766666554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4e-25  Score=235.52  Aligned_cols=220  Identities=22%  Similarity=0.421  Sum_probs=185.1

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277          354 LNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (704)
Q Consensus       354 V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (704)
                      +..+.|+. +.++||+++..|.|.+||+...                         ...+....+..|...|.++.|++.
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~-------------------------~rnk~l~~f~EH~Rs~~~ldfh~t  144 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS-------------------------IRNKLLTVFNEHERSANKLDFHST  144 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCcc-------------------------ccchhhhHhhhhccceeeeeeccC
Confidence            45577775 4889999999999999999752                         123455678899999999999986


Q ss_pred             CC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCC-ceeEEeccCCCCee
Q 005277          433 GD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVD  509 (704)
Q Consensus       433 ~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~~~~~V~  509 (704)
                      .. +|+|||.||+|++||++..+...++.+....|.+|+|+| .+.+|+++...|.+++||++.. ++...+..|.++|.
T Consensus       145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~  224 (839)
T KOG0269|consen  145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVL  224 (839)
T ss_pred             CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceE
Confidence            64 678999999999999999999999999999999999999 7889999999999999999875 46677889999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec-CCCCEEEEEEecCCC-EEEEEe--CCCeEEEEeCCCC-eeeee
Q 005277          510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGR-YMASGD--EDGTIMMWDLASG-RCVTP  584 (704)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~i~~l~~spdg~-~l~sg~--~dg~I~iwdl~~~-~~~~~  584 (704)
                      |+.|||++.+||||+.|+.|+|||+.+++.-....- ...+|.++.|-|... .|++++  .|-.|+|||++.. -+..+
T Consensus       225 c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t  304 (839)
T KOG0269|consen  225 CLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT  304 (839)
T ss_pred             EEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccccee
Confidence            999999999999999999999999986654333332 346899999999765 456554  5789999999765 34567


Q ss_pred             ecCCCceeeeeeee
Q 005277          585 LMGHTSCVWTLAYR  598 (704)
Q Consensus       585 ~~~h~~~V~sl~~~  598 (704)
                      +..|+..++.+.|.
T Consensus       305 ~~eH~~~vt~i~W~  318 (839)
T KOG0269|consen  305 FLEHTDSVTGIAWD  318 (839)
T ss_pred             eeccCccccceecc
Confidence            88899999999993

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.7e-25  Score=230.81  Aligned_cols=224  Identities=28%  Similarity=0.482  Sum_probs=200.7

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCc------eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEec
Q 005277          431 PLGDFILSSSADTTIRLWSTKLNA------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI--QPLRIMA  502 (704)
Q Consensus       431 p~~~~l~s~s~Dg~I~lwd~~~~~------~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~--~~~~~~~  502 (704)
                      |.+++|++|+.||.|++|++....      .+..+..|...|.++....+++.|+++|.|-+|++|+....  -+..++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            456789999999999999987543      36678889999999999999999999999999999999876  5777888


Q ss_pred             cCCCCeeEEEE-cCCCCEEEEEECCCcEEEEeCCCCc--EEEE--------ee-cCCCCEEEEEEecCCCEEEEEeCCCe
Q 005277          503 GHLSDVDCVRW-HINCNYIATGSSDKTVRLWDVSSGE--CVRI--------FI-GHRSMILSLAMSPDGRYMASGDEDGT  570 (704)
Q Consensus       503 ~~~~~V~~v~~-~p~~~~l~tgs~dg~I~iwd~~~~~--~~~~--------~~-~h~~~i~~l~~spdg~~l~sg~~dg~  570 (704)
                      .|.+.|.|+++ -++...+|+|+-|+.|.+||+.++.  .+..        .. |+..+|++++.++.|..+++|+..+.
T Consensus       115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~  194 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD  194 (735)
T ss_pred             cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence            99999999999 7888999999999999999999772  2222        22 78889999999999999999999999


Q ss_pred             EEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEE
Q 005277          571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLW  650 (704)
Q Consensus       571 I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iW  650 (704)
                      |++||.++++.+..++||+..|..+-.                                  ++||+.++++|.||+|++|
T Consensus       195 lr~wDprt~~kimkLrGHTdNVr~ll~----------------------------------~dDGt~~ls~sSDgtIrlW  240 (735)
T KOG0308|consen  195 LRLWDPRTCKKIMKLRGHTDNVRVLLV----------------------------------NDDGTRLLSASSDGTIRLW  240 (735)
T ss_pred             eEEeccccccceeeeeccccceEEEEE----------------------------------cCCCCeEeecCCCceEEee
Confidence            999999999999999999999999988                                  9999999999999999999


Q ss_pred             eCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          651 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       651 d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      |+...               +++.++..|...|.++..+|+-..+.+|+.||.
T Consensus       241 dLgqQ---------------rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~  278 (735)
T KOG0308|consen  241 DLGQQ---------------RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN  278 (735)
T ss_pred             ecccc---------------ceeeeEEeccCceEEEeeCCCcceEEecCCCCc
Confidence            99764               567788889999999999999999999999874

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=4.1e-24  Score=216.05  Aligned_cols=218  Identities=25%  Similarity=0.443  Sum_probs=190.4

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      +|...|.|++.|+||++||+|+.|..|.||+..+                            ...+..+.+|.+.|.+++
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t----------------------------~ehv~~~~ghr~~V~~L~  251 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT----------------------------LEHVKVFKGHRGAVSSLA  251 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcc----------------------------cchhhcccccccceeeee
Confidence            7889999999999999999999999999999886                            334455889999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCe
Q 005277          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV  508 (704)
Q Consensus       429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V  508 (704)
                      |-.....|++++.|.+|++|+++....+.++.+|...|.+|.-..-++.+-+|+.|+++++|++.. ....++.++.+.+
T Consensus       252 fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~si  330 (479)
T KOG0299|consen  252 FRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSI  330 (479)
T ss_pred             eecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCe
Confidence            998888899999999999999999999999999999999999998888888888999999999943 4455678899999


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-cC-----------CCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GH-----------RSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h-----------~~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                      .|++|- +...+++|+.+|.|.+|++...+++.+.. .|           ..+|++++..|...++++|+.+|+|++|-+
T Consensus       331 dcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i  409 (479)
T KOG0299|consen  331 DCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI  409 (479)
T ss_pred             eeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence            999995 56789999999999999999998887653 12           238999999999999999999999999999


Q ss_pred             CCC----eeeeeecCCCceeeeeee
Q 005277          577 ASG----RCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       577 ~~~----~~~~~~~~h~~~V~sl~~  597 (704)
                      ..+    +++..+. -.+.|+++.|
T Consensus       410 ~~g~r~i~~l~~ls-~~GfVNsl~f  433 (479)
T KOG0299|consen  410 EDGLRAINLLYSLS-LVGFVNSLAF  433 (479)
T ss_pred             cCCccccceeeecc-cccEEEEEEE
Confidence            877    3344444 5688888888

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=7e-23  Score=198.94  Aligned_cols=243  Identities=23%  Similarity=0.406  Sum_probs=207.6

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~--dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      +...+.-+|..+.|......+..++.  |-+||..++.+                            .+.++.+.||...
T Consensus        51 ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d----------------------------NkylRYF~GH~~~  102 (311)
T KOG1446|consen   51 TINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD----------------------------NKYLRYFPGHKKR  102 (311)
T ss_pred             EeecccccccEEEEecCCceEEEccCCCCCceEEEEeec----------------------------CceEEEcCCCCce
Confidence            44555668899999887777777776  88999999876                            5678889999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEe
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI--QPLRIM  501 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~--~~~~~~  501 (704)
                      |.+++.+|-++.++|++.|++|++||++..++...+.....+|  ++|.|.|-+||++.....|++||++..  .|..++
T Consensus       103 V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf  180 (311)
T KOG1446|consen  103 VNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTF  180 (311)
T ss_pred             EEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCceeE
Confidence            9999999999999999999999999999988888777555554  789999999999998889999999863  455555


Q ss_pred             c---cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCE---EEEEEecCCCEEEEEeCCCeEEEEe
Q 005277          502 A---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI---LSLAMSPDGRYMASGDEDGTIMMWD  575 (704)
Q Consensus       502 ~---~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i---~~l~~spdg~~l~sg~~dg~I~iwd  575 (704)
                      .   +.....+.+.|+|+|++|+.++..+.+++.|.-+|.....+.++...-   ...+|+|||+++++|+.||+|.+|+
T Consensus       181 ~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~  260 (311)
T KOG1446|consen  181 SITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWN  260 (311)
T ss_pred             ccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence            4   346778999999999999999999999999999999998888776532   5788999999999999999999999


Q ss_pred             CCCCeeeeeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          576 LASGRCVTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       576 l~~~~~~~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                      +++|..+..+.+ +.+++.++.|                                  +|.-.++++++  ..+.+|=...
T Consensus       261 ~~tg~~v~~~~~~~~~~~~~~~f----------------------------------nP~~~mf~sa~--s~l~fw~p~~  304 (311)
T KOG1446|consen  261 LETGKKVAVLRGPNGGPVSCVRF----------------------------------NPRYAMFVSAS--SNLVFWLPDE  304 (311)
T ss_pred             cCCCcEeeEecCCCCCCcccccc----------------------------------CCceeeeeecC--ceEEEEeccc
Confidence            999999999988 6899999999                                  77766777665  5788886543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=2e-23  Score=199.57  Aligned_cols=219  Identities=26%  Similarity=0.461  Sum_probs=175.8

Q ss_pred             eeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          348 INTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       348 ~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      ..|.++|+++.+.+- |+++++|+.||.|.+||+........             ...+....-........+|.-.|.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-------------s~li~k~~c~v~~~h~~~Hky~iss  106 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-------------SGLIAKHKCIVAKQHENGHKYAISS  106 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh-------------ccceeheeeeccccCCccceeeeee
Confidence            468899999999885 99999999999999999975221000             0000000000011234578999999


Q ss_pred             EEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC---CCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277          427 ASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP---QGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (704)
Q Consensus       427 l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp---~~~~l~sgs~dg~i~lwd~~~~~~~~~~~  502 (704)
                      +.|-|-. ..+.++|-|.++++||..+-+....|+ ..+.|.+-+|+|   ...++|+|..|-.|++.|+..+....++.
T Consensus       107 ~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls  185 (397)
T KOG4283|consen  107 AIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS  185 (397)
T ss_pred             eEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec
Confidence            9999954 467799999999999999999888887 466899999998   34578888899999999999999999999


Q ss_pred             cCCCCeeEEEEcCCCCE-EEEEECCCcEEEEeCCCC-cEEEEe--------------ecCCCCEEEEEEecCCCEEEEEe
Q 005277          503 GHLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSG-ECVRIF--------------IGHRSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~-~~~~~~--------------~~h~~~i~~l~~spdg~~l~sg~  566 (704)
                      ||.+.|.+|.|+|...+ |++|+.||.|++||++.. .|.+.+              ..|.+.+..++|+.+|.++++.+
T Consensus       186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g  265 (397)
T KOG4283|consen  186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG  265 (397)
T ss_pred             cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence            99999999999998765 578999999999999854 333332              35778899999999999999999


Q ss_pred             CCCeEEEEeCCCCe
Q 005277          567 EDGTIMMWDLASGR  580 (704)
Q Consensus       567 ~dg~I~iwdl~~~~  580 (704)
                      .|..+++|+..+|+
T Consensus       266 td~r~r~wn~~~G~  279 (397)
T KOG4283|consen  266 TDDRIRVWNMESGR  279 (397)
T ss_pred             CccceEEeecccCc
Confidence            99999999998875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.4e-24  Score=229.69  Aligned_cols=280  Identities=18%  Similarity=0.299  Sum_probs=218.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceee---ccCCccCeEEE
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL---YQGHSGPVYSA  427 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~V~~l  427 (704)
                      ....+++..+++-..|+.++ .....||.+.......                        .....   -+.-.-.+..+
T Consensus        39 k~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~------------------------~~~~~~k~kqn~~~S~~DV   93 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSE------------------------KCNHRFKTKQNKFYSAADV   93 (839)
T ss_pred             ccccceEeecCCcceeEEec-ccceeeEeeCcccCCc------------------------ceeeecccccceeeehhhc
Confidence            34567777788877777664 4567788776421100                        00000   01111345567


Q ss_pred             EEcC-CCCEEEEEeCCCeEEEEeCCC---CceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277          428 SFSP-LGDFILSSSADTTIRLWSTKL---NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (704)
Q Consensus       428 ~~sp-~~~~l~s~s~Dg~I~lwd~~~---~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~~  502 (704)
                      .|.. +.++|++++..|.|.+||+..   .+.+..|..|...|.++.|++ ..+++++||.||+|++||++.......+.
T Consensus        94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~  173 (839)
T KOG0269|consen   94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR  173 (839)
T ss_pred             ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc
Confidence            7874 346899999999999999987   566778999999999999999 56789999999999999999998888998


Q ss_pred             cCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          503 GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       503 ~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      +....|..|.|+| .+++++++...|.+++||+|. .++...+..|.++|.|+.|+|++.+||+||.|+.|+|||+.+++
T Consensus       174 ~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~  253 (839)
T KOG0269|consen  174 SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR  253 (839)
T ss_pred             ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence            8889999999998 578999999999999999985 56778889999999999999999999999999999999998765


Q ss_pred             eeeeecCC-CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC-CEEEEEe--CCCcEEEEeCCCCc
Q 005277          581 CVTPLMGH-TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG-SLLASGS--ADCTVKLWDVTTST  656 (704)
Q Consensus       581 ~~~~~~~h-~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~lasgs--~Dg~V~iWd~~~~~  656 (704)
                      .-....-+ ..+|..+.|                                  -|.. ..||+++  .|-.|+|||+..+.
T Consensus       254 ~~~~~tInTiapv~rVkW----------------------------------RP~~~~hLAtcsmv~dtsV~VWDvrRPY  299 (839)
T KOG0269|consen  254 AKPKHTINTIAPVGRVKW----------------------------------RPARSYHLATCSMVVDTSVHVWDVRRPY  299 (839)
T ss_pred             ccceeEEeecceeeeeee----------------------------------ccCccchhhhhhccccceEEEEeecccc
Confidence            43333323 368899999                                  4443 5677776  57899999998865


Q ss_pred             cccccccccCccccccccccCCCCcCeEEEEEcc-CCcEEEEeecCCC
Q 005277          657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RNLLFAAGALSKT  703 (704)
Q Consensus       657 ~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~-~g~~La~gs~dgt  703 (704)
                      .              +..++..|...|+.++|-. |-..|.+++.||+
T Consensus       300 I--------------P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~t  333 (839)
T KOG0269|consen  300 I--------------PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGT  333 (839)
T ss_pred             c--------------cceeeeccCccccceeccCCCceeeEeecCccH
Confidence            3              3557778888999999965 5667888888875

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.3e-23  Score=199.47  Aligned_cols=268  Identities=15%  Similarity=0.249  Sum_probs=215.8

Q ss_pred             EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCe
Q 005277          365 LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTT  444 (704)
Q Consensus       365 ~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~  444 (704)
                      .|++|+....|.-+++........         .       ...........+..|.++|++++.+  +.+++|||.|-+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~---------~-------s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDet   64 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCT---------D-------SVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDET   64 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccc---------c-------ccceeeeccccccccccceeEEEec--ceeEeccCCCCc
Confidence            367888888777777664220000         0       0001122345678899999999998  999999999999


Q ss_pred             EEEEeCCCCceeEEeecCCcCeeEEEEcCCCC--EEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEE
Q 005277          445 IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH--YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT  522 (704)
Q Consensus       445 I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~--~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t  522 (704)
                      |+|||+.....+..+..|.+.|+++.|.+.-.  .+++|+.||.|.+|+......+..+.+|...|+.++.||.+++-++
T Consensus        65 I~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALs  144 (362)
T KOG0294|consen   65 IHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALS  144 (362)
T ss_pred             EEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEE
Confidence            99999999999999999999999999998664  8999999999999999999999999999999999999999999999


Q ss_pred             EECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeeh
Q 005277          523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLL  602 (704)
Q Consensus       523 gs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~  602 (704)
                      .+.|+.+++|++-+|+.-....- ....+.+.|+|.|.+++.++.+ .|-||.+.+......+... ..+.++.|     
T Consensus       145 Vg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~-----  216 (362)
T KOG0294|consen  145 VGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATF-----  216 (362)
T ss_pred             EcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeee-----
Confidence            99999999999999887655532 2334559999999999888876 5999999887666555432 33444444     


Q ss_pred             ccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcC
Q 005277          603 VTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP  682 (704)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  682 (704)
                                                    -++..|++|+.|+.|.+||..+..               ++..+..|...
T Consensus       217 ------------------------------l~~~~L~vG~d~~~i~~~D~ds~~---------------~~~~~~AH~~R  251 (362)
T KOG0294|consen  217 ------------------------------LDGSELLVGGDNEWISLKDTDSDT---------------PLTEFLAHENR  251 (362)
T ss_pred             ------------------------------cCCceEEEecCCceEEEeccCCCc---------------cceeeecchhh
Confidence                                          357799999999999999998743               35677889999


Q ss_pred             eEEEEE--ccCCcEEEEeecCCC
Q 005277          683 VYSLQF--SRRNLLFAAGALSKT  703 (704)
Q Consensus       683 V~~l~f--s~~g~~La~gs~dgt  703 (704)
                      |.++.+  .|++.+|++++.||.
T Consensus       252 VK~i~~~~~~~~~~lvTaSSDG~  274 (362)
T KOG0294|consen  252 VKDIASYTNPEHEYLVTASSDGF  274 (362)
T ss_pred             eeeeEEEecCCceEEEEeccCce
Confidence            999985  567899999999983

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.5e-25  Score=236.85  Aligned_cols=223  Identities=26%  Similarity=0.512  Sum_probs=207.0

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      +.-|...|.|+..-..++.+++|+.|-.+-+|.+..                            ......+.+|.++|.+
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k----------------------------p~~i~S~~~hespIeS   75 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK----------------------------PNAITSLTGHESPIES   75 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccC----------------------------CchhheeeccCCccee
Confidence            445677788888866789999999999999999765                            1233348899999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS  506 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~  506 (704)
                      +.|+++..+|+.|+.+|+|++||+...+.++++.+|...+.++.|+|-+.|+++|+.|+.+++||++...+...+.+|..
T Consensus        76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~  155 (825)
T KOG0267|consen   76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR  155 (825)
T ss_pred             eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (704)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~  586 (704)
                      .|.++.|+|+|.+++.|+.|.+++|||...|+....|..|.+.+.++.|+|..-.+++|+.|+++++||+++...+....
T Consensus       156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~  235 (825)
T KOG0267|consen  156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK  235 (825)
T ss_pred             eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             CCCceeeeeee
Q 005277          587 GHTSCVWTLAY  597 (704)
Q Consensus       587 ~h~~~V~sl~~  597 (704)
                      .....|.+..|
T Consensus       236 ~~~~~v~~~~f  246 (825)
T KOG0267|consen  236 PETDGVRSLAF  246 (825)
T ss_pred             CccCCceeeee
Confidence            88889999999

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=9.8e-24  Score=203.26  Aligned_cols=290  Identities=21%  Similarity=0.318  Sum_probs=223.1

Q ss_pred             eEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccC----CccccccccCCCCCC---CCccc
Q 005277          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKL----GQQAVSSGLQGENDT---TPRED  403 (704)
Q Consensus       331 ~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~----~~~~~~~~~~~~~~~---~~~~~  403 (704)
                      ...+|+.. ...|+.++.+|.+.|+|+.|++.+.++++|+.|++-.||...-.    ...............   ....+
T Consensus       171 TA~iWs~E-sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d  249 (481)
T KOG0300|consen  171 TARIWSLE-SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRD  249 (481)
T ss_pred             ceeEEeec-cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccc
Confidence            34455432 24678889999999999999999999999999999999973221    111000000000000   00000


Q ss_pred             cc---CCC--CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEE
Q 005277          404 II---GPN--GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF  478 (704)
Q Consensus       404 ~~---~~~--~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l  478 (704)
                      ..   ..+  .-..+...+.||.+.|.+..|...|+.+++++.|.+..+||++++..+..+.||....+.++-+|..+++
T Consensus       250 ~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLV  329 (481)
T KOG0300|consen  250 TDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLV  329 (481)
T ss_pred             cccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEE
Confidence            00   001  1123456788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCeEEEEECCC-CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-EEEEeecCCCCEEEEEEe
Q 005277          479 ASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMS  556 (704)
Q Consensus       479 ~sgs~dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~i~~l~~s  556 (704)
                      ++++.|.+.++||++. ...+..|.||...|+++.|..+ ..+++|+.|.+|++||+++.+ ++.++ ....+++.++.+
T Consensus       330 vTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATI-RtdS~~NRvavs  407 (481)
T KOG0300|consen  330 VTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATI-RTDSPANRVAVS  407 (481)
T ss_pred             EEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceee-ecCCccceeEee
Confidence            9999999999999974 4567889999999999999765 568899999999999999765 44444 356789999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCeee----eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277          557 PDGRYMASGDEDGTIMMWDLASGRCV----TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS  632 (704)
Q Consensus       557 pdg~~l~sg~~dg~I~iwdl~~~~~~----~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  632 (704)
                      ..+..++.-.++..|++||+...+..    ..-++|...|.|.+|.--                               .
T Consensus       408 ~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee-------------------------------h  456 (481)
T KOG0300|consen  408 KGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE-------------------------------H  456 (481)
T ss_pred             cCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc-------------------------------C
Confidence            88889999999999999998654332    133689999999999210                               2


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCC
Q 005277          633 CEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       633 ~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                      |- .-|+++|-|..+.-|++...
T Consensus       457 p~-cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  457 PA-CNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             cc-cccccccccceeeeeEeccc
Confidence            22 45789999999999998764

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=1.3e-22  Score=218.00  Aligned_cols=327  Identities=21%  Similarity=0.318  Sum_probs=229.1

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      .++.+|+.... ...|++.++..+|+|+.-+|--..+|.|..+|.|.|+++..                           
T Consensus       182 G~lql~Nvrt~-K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~---------------------------  233 (910)
T KOG1539|consen  182 GRLQLWNVRTG-KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF---------------------------  233 (910)
T ss_pred             CcEEEEEeccC-cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc---------------------------
Confidence            46667765543 34678889999999999999999999999999999999986                           


Q ss_pred             CccceeeccCCccCeEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCCCEEEEEeCCCeE
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTA  487 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~dg~i  487 (704)
                       ...+..+....+.|++++|..||+. +++|+..|.+.+||++..+.+.... .|.+.|....|.|....+++++.|+.+
T Consensus       234 -dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSl  312 (910)
T KOG1539|consen  234 -DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSL  312 (910)
T ss_pred             -CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCce
Confidence             2233444433599999999999985 5577778999999999766554444 565666666666666666666666665


Q ss_pred             EEEECCCC------------------------------------------------------c-----------------
Q 005277          488 RIWSMDRI------------------------------------------------------Q-----------------  496 (704)
Q Consensus       488 ~lwd~~~~------------------------------------------------------~-----------------  496 (704)
                      ++|-.+++                                                      +                 
T Consensus       313 k~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~  392 (910)
T KOG1539|consen  313 KVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK  392 (910)
T ss_pred             eEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence            55532200                                                      0                 


Q ss_pred             ----eeEE--------------------------------------e-----ccCCCCeeEEEEcCCCCEEEEEECCCcE
Q 005277          497 ----PLRI--------------------------------------M-----AGHLSDVDCVRWHINCNYIATGSSDKTV  529 (704)
Q Consensus       497 ----~~~~--------------------------------------~-----~~~~~~V~~v~~~p~~~~l~tgs~dg~I  529 (704)
                          ++..                                      +     ......+++++.++.|++.+.|++.|+|
T Consensus       393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~I  472 (910)
T KOG1539|consen  393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTI  472 (910)
T ss_pred             hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeE
Confidence                0000                                      0     0011456788888999999999999999


Q ss_pred             EEEeCCCCcEEEEe---ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeee----eeeeh
Q 005277          530 RLWDVSSGECVRIF---IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY----RFLLL  602 (704)
Q Consensus       530 ~iwd~~~~~~~~~~---~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~----~~~~~  602 (704)
                      -+|++++|-....|   ..|.++|++++...-++.+++++.+|.+.+||..+...+..+.-. .++..+..    .....
T Consensus       473 d~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~s~l~a~  551 (910)
T KOG1539|consen  473 DRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRVSDLLAI  551 (910)
T ss_pred             EEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeehhhhhhh
Confidence            99999999888888   489999999999888899999999999999999887655554311 11112211    11111


Q ss_pred             ccccc-cccccccccc--eee-eeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCC
Q 005277          603 VTNAY-LKISDKVSTG--FLF-YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT  678 (704)
Q Consensus       603 ~~~~~-~~~~~~~~~~--~~~-~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~  678 (704)
                      ..+.+ ..+.+.....  ..+ .....++..++||||++|++++.|++|++||+.++..+               ..+ .
T Consensus       552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI---------------D~~-~  615 (910)
T KOG1539|consen  552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI---------------DGL-L  615 (910)
T ss_pred             hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee---------------eeE-e
Confidence            11111 1111111000  001 12335556667999999999999999999999998643               222 3


Q ss_pred             CCcCeEEEEEccCCcEEEEeecCC
Q 005277          679 KSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       679 ~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      -..+..+++|||+|.+||+...|.
T Consensus       616 vd~~~~sls~SPngD~LAT~Hvd~  639 (910)
T KOG1539|consen  616 VDSPCTSLSFSPNGDFLATVHVDQ  639 (910)
T ss_pred             cCCcceeeEECCCCCEEEEEEecC
Confidence            467899999999999999988774

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=2.6e-23  Score=218.92  Aligned_cols=325  Identities=15%  Similarity=0.226  Sum_probs=246.2

Q ss_pred             CeEeecCCCCCC--eEEEEEeeCCCCEEEEEEcCC-----------CCEEEEEeCCCcEEEEEcccCCccccccc--cCC
Q 005277          330 NRVHLSSAALPS--VSFYTFINTHNGLNCASISQD-----------GSLVAGGFSDSSLKVWDMAKLGQQAVSSG--LQG  394 (704)
Q Consensus       330 ~~~~l~~~~~p~--~~~~~~~~~~~~V~~~~fs~d-----------g~~lasg~~dg~I~iwdl~~~~~~~~~~~--~~~  394 (704)
                      ..+++|+...+.  -.++.++.|...|+.+.--|.           ...+.+++.|++||+|++.......+...  ...
T Consensus       346 hSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~  425 (1080)
T KOG1408|consen  346 HSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSA  425 (1080)
T ss_pred             ceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchh
Confidence            457788765443  345677888888887765441           23588999999999999986322222110  000


Q ss_pred             CCCCCC----cccccC---CCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCee
Q 005277          395 ENDTTP----REDIIG---PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW  467 (704)
Q Consensus       395 ~~~~~~----~~~~~~---~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~  467 (704)
                      .....+    ....+.   .....+......+....|.+++.+|++++|++|..-|+++||++..-.....+..|...|.
T Consensus       426 ~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEil  505 (1080)
T KOG1408|consen  426 NLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEIL  505 (1080)
T ss_pred             hhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeE
Confidence            000000    000000   0001111122334556799999999999999999999999999999888889999999999


Q ss_pred             EEEEcC---CCCEEEEEeCCCeEEEEECCC-CceeEEeccCCCCeeEEEEcCCC--CEEEEEECCCcEEEEeCCCCcEEE
Q 005277          468 DVQFNP---QGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVR  541 (704)
Q Consensus       468 ~v~~sp---~~~~l~sgs~dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~--~~l~tgs~dg~I~iwd~~~~~~~~  541 (704)
                      |+.|+.   ..+++|+++.|+.|++||+.. ..+++.+.+|.+.|++|.|.-+|  ..+++++.|+.|.+--.+.....+
T Consensus       506 cLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~  585 (1080)
T KOG1408|consen  506 CLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR  585 (1080)
T ss_pred             EEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce
Confidence            999986   457899999999999999965 45778889999999999999877  778888999888554333222233


Q ss_pred             EeecC-----CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC---CCceeeeeeeeeeehccccccccccc
Q 005277          542 IFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG---HTSCVWTLAYRFLLLVTNAYLKISDK  613 (704)
Q Consensus       542 ~~~~h-----~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~---h~~~V~sl~~~~~~~~~~~~~~~~~~  613 (704)
                      .|..|     ...++.|+..|..+++++++.|..|+|||+.+|+..+.+++   |.+....+..                
T Consensus       586 ~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~l----------------  649 (1080)
T KOG1408|consen  586 LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVIL----------------  649 (1080)
T ss_pred             eccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEE----------------
Confidence            34333     34689999999999999999999999999999999999975   5566656665                


Q ss_pred             cccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCc
Q 005277          614 VSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL  693 (704)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~  693 (704)
                                        .|.|.+||+...|.++.++|+.+++               ++.+..+|..-|+.|.|++|-+
T Consensus       650 ------------------DPSgiY~atScsdktl~~~Df~sgE---------------cvA~m~GHsE~VTG~kF~nDCk  696 (1080)
T KOG1408|consen  650 ------------------DPSGIYLATSCSDKTLCFVDFVSGE---------------CVAQMTGHSEAVTGVKFLNDCK  696 (1080)
T ss_pred             ------------------CCCccEEEEeecCCceEEEEeccch---------------hhhhhcCcchheeeeeecccch
Confidence                              8999999999999999999999985               4778889999999999999999


Q ss_pred             EEEEeecCCC
Q 005277          694 LFAAGALSKT  703 (704)
Q Consensus       694 ~La~gs~dgt  703 (704)
                      .|.+.+.||+
T Consensus       697 HlISvsgDgC  706 (1080)
T KOG1408|consen  697 HLISVSGDGC  706 (1080)
T ss_pred             hheeecCCce
Confidence            9999999885

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=3.8e-24  Score=217.27  Aligned_cols=259  Identities=20%  Similarity=0.312  Sum_probs=215.7

Q ss_pred             eEeecCCCCC----CeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277          331 RVHLSSAALP----SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (704)
Q Consensus       331 ~~~l~~~~~p----~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (704)
                      .|++|+..-|    .+..+-.++..+-|.++.+.|||+.|++|+.-.++.|||+......                    
T Consensus       441 cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr--------------------  500 (705)
T KOG0639|consen  441 CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR--------------------  500 (705)
T ss_pred             eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc--------------------
Confidence            4566655433    2223344566677999999999999999999999999999762211                    


Q ss_pred             CCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe
Q 005277          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (704)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~  486 (704)
                            ....+....-.+++++.+||.+..++|..||.|.|||+.....+..+++|...+.||..+++|..+++|+-|++
T Consensus       501 ------ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt  574 (705)
T KOG0639|consen  501 ------IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT  574 (705)
T ss_pred             ------hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence                  11122233356889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe
Q 005277          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~  566 (704)
                      ||.||++.+..+.... ..+.|.++.++|++.++++|-.++.+.+.... +.....+..|..-|.++.|.+.|+|+++.+
T Consensus       575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecC
Confidence            9999999987776544 45789999999999999999999999998864 444455667999999999999999999999


Q ss_pred             CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT  646 (704)
Q Consensus       567 ~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~  646 (704)
                      .|+.+..|...-|..+...+ ..++|.+++.                                  |.+.++|+||+.|..
T Consensus       653 kDnlLnawrtPyGasiFqsk-E~SsVlsCDI----------------------------------S~ddkyIVTGSGdkk  697 (705)
T KOG0639|consen  653 KDNLLNAWRTPYGASIFQSK-ESSSVLSCDI----------------------------------SFDDKYIVTGSGDKK  697 (705)
T ss_pred             chhhhhhccCccccceeecc-ccCcceeeee----------------------------------ccCceEEEecCCCcc
Confidence            99999999998887776654 3567888777                                  899999999999998


Q ss_pred             EEEEeC
Q 005277          647 VKLWDV  652 (704)
Q Consensus       647 V~iWd~  652 (704)
                      ..||.+
T Consensus       698 ATVYeV  703 (705)
T KOG0639|consen  698 ATVYEV  703 (705)
T ss_pred             eEEEEE
Confidence            888875

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.4e-22  Score=211.89  Aligned_cols=278  Identities=20%  Similarity=0.290  Sum_probs=228.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc-CCccCeEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSGPVYSAS  428 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~  428 (704)
                      .+.+|.|++||.+.+.||+|-.||.|.||++...                           ......+. +-.+.|.+++
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~---------------------------w~~~~vi~g~~drsIE~L~   76 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN---------------------------WFLEPVIHGPEDRSIESLA   76 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCC---------------------------ceeeEEEecCCCCceeeEE
Confidence            4678999999999999999999999999998751                           11222333 3457899999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEeccCCC
Q 005277          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL--RIMAGHLS  506 (704)
Q Consensus       429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~--~~~~~~~~  506 (704)
                      |++ +..|+|.+.+|.|.-||+.+.+....+....++||+++.+|.+..++.|+.||.+..++...+...  +.+....+
T Consensus        77 W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s  155 (691)
T KOG2048|consen   77 WAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS  155 (691)
T ss_pred             Ecc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccc
Confidence            995 556899999999999999999999999999999999999999999999999998888887665443  44455678


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-----c---CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-----G---HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-----~---h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                      .|.+++|+|++..|++|+.||.|++||+.++..+....     .   ...-|.++.|-.+ ..|++|...|+|.+||...
T Consensus       156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~  234 (691)
T KOG2048|consen  156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIF  234 (691)
T ss_pred             eEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccC
Confidence            99999999999999999999999999999998776322     1   1223566666645 4789999999999999999


Q ss_pred             CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277          579 GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~  658 (704)
                      +.++..+..|.+.|.+++.                                  .+++++++++|.|+.|.-+...+....
T Consensus       235 gTLiqS~~~h~adVl~Lav----------------------------------~~~~d~vfsaGvd~~ii~~~~~~~~~~  280 (691)
T KOG2048|consen  235 GTLIQSHSCHDADVLALAV----------------------------------ADNEDRVFSAGVDPKIIQYSLTTNKSE  280 (691)
T ss_pred             cchhhhhhhhhcceeEEEE----------------------------------cCCCCeEEEccCCCceEEEEecCCccc
Confidence            9999999999999999998                                  889999999999999999988776531


Q ss_pred             cccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          659 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       659 ~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                 +........|...|.+++..++  .|.+|+.|.+
T Consensus       281 -----------wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~  312 (691)
T KOG2048|consen  281 -----------WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFT  312 (691)
T ss_pred             -----------eeeeccccCCcccceeeeeecc--eEEecceeeE
Confidence                       2223344567778999988877  7778877753

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.91  E-value=8e-23  Score=197.98  Aligned_cols=286  Identities=21%  Similarity=0.343  Sum_probs=218.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc---
Q 005277          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS---  430 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s---  430 (704)
                      ...+.|||||..|++-+.|..+.+|++..........               .+................|+..+|-   
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~---------------~~~~~~~~~~~r~~eg~tvydy~wYs~M  116 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKAD---------------GPLNFSKHLSYRYQEGETVYDYCWYSRM  116 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCC---------------CccccccceeEEeccCCEEEEEEeeecc
Confidence            4578999999999999999999999987521111000               0000011111112234678888886   


Q ss_pred             ----CCCCEEEEEeCCCeEEEEeCCCCceeEEeec--CC---cCeeEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeEE
Q 005277          431 ----PLGDFILSSSADTTIRLWSTKLNANLVCYKG--HN---YPVWDVQFNPQGHYFASSSHDRTARIWSM-DRIQPLRI  500 (704)
Q Consensus       431 ----p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~--h~---~~V~~v~~sp~~~~l~sgs~dg~i~lwd~-~~~~~~~~  500 (704)
                          |+..++++++.+.-|++||.-+++....|++  |.   ....+++|+|||.+|++| ..+.|+++|+ +.+.....
T Consensus       117 ~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~v  195 (406)
T KOG2919|consen  117 KSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPV  195 (406)
T ss_pred             ccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcc
Confidence                5677899999999999999999998888764  32   235689999999999877 4589999999 44432221


Q ss_pred             e-------ccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCeE
Q 005277          501 M-------AGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTI  571 (704)
Q Consensus       501 ~-------~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I  571 (704)
                      +       .+..+-+.|++|||- ...+++|+....+-||.-..+.++..+-+|.+.|+.++|.++|+.|++|+ .|..|
T Consensus       196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI  275 (406)
T KOG2919|consen  196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI  275 (406)
T ss_pred             hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence            1       133667899999994 56999999999999998888999999999999999999999999999987 46789


Q ss_pred             EEEeCCC-CeeeeeecCCCc-eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          572 MMWDLAS-GRCVTPLMGHTS-CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       572 ~iwdl~~-~~~~~~~~~h~~-~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                      .+||++. +.++..+..|.+ .-..|-|..                                .|++++|++|+.||.|++
T Consensus       276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDl--------------------------------d~~~~~LasG~tdG~V~v  323 (406)
T KOG2919|consen  276 LCWDIRYSRDPVYALERHVGDTNQRILFDL--------------------------------DPKGEILASGDTDGSVRV  323 (406)
T ss_pred             EEEeehhccchhhhhhhhccCccceEEEec--------------------------------CCCCceeeccCCCccEEE
Confidence            9999986 456677777765 444444522                                889999999999999999


Q ss_pred             EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                      ||++....              .+..+..+...|..|+++|--.++|+++..
T Consensus       324 wdlk~~gn--------------~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  324 WDLKDLGN--------------EVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             EecCCCCC--------------cccccccccccccceecCcccceeeeccCc
Confidence            99988432              245666788889999999999999998754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.4e-23  Score=209.88  Aligned_cols=221  Identities=21%  Similarity=0.364  Sum_probs=195.2

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      -++.|.|++-+|+|.+|+.|+..|.|.+|.+.+                            +.....+.+|-.+|+|+.|
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss----------------------------G~LL~v~~aHYQ~ITcL~f  131 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSS----------------------------GILLNVLSAHYQSITCLKF  131 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEecc----------------------------ccHHHHHHhhccceeEEEE
Confidence            357899999999999999999999999999987                            3455667889999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCC---------CCceeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEEEEECCCCcee
Q 005277          430 SPLGDFILSSSADTTIRLWSTK---------LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQPL  498 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~---------~~~~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~lwd~~~~~~~  498 (704)
                      +-|+.+|+|||.||.|.+|++-         +-+....+..|+-+|+++...+.  ..+++|+|.|.++++||+..+..+
T Consensus       132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL  211 (476)
T KOG0646|consen  132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL  211 (476)
T ss_pred             eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence            9999999999999999999863         34567888999999999998874  468999999999999999999888


Q ss_pred             EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC----------------CcEEEEeecCCC--CEEEEEEecCCC
Q 005277          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS----------------GECVRIFIGHRS--MILSLAMSPDGR  560 (704)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~----------------~~~~~~~~~h~~--~i~~l~~spdg~  560 (704)
                      ..+. ....+.+++..|-+..+++|+.+|.|.+.++..                +..+..+.||.+  .|+|++++-||.
T Consensus       212 lti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt  290 (476)
T KOG0646|consen  212 LTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT  290 (476)
T ss_pred             EEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc
Confidence            7776 567899999999999999999999999988743                234566789988  999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeee
Q 005277          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRF  599 (704)
Q Consensus       561 ~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~  599 (704)
                      .|++|+.||.++|||+.+.++++++....++|+.+.+++
T Consensus       291 lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  291 LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence            999999999999999999999999887778999888743

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=1.6e-22  Score=209.82  Aligned_cols=295  Identities=19%  Similarity=0.327  Sum_probs=232.0

Q ss_pred             CCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec
Q 005277          338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (704)
Q Consensus       338 ~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (704)
                      +.|..|.+.+.+|.+.|.|+...|.|.+||+|+.||+|+||.+.++                            +++...
T Consensus       387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg----------------------------Rcvr~~  438 (733)
T KOG0650|consen  387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG----------------------------RCVRTV  438 (733)
T ss_pred             CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc----------------------------eEEEEE
Confidence            6788999999999999999999999999999999999999999873                            233222


Q ss_pred             cCCccCeEEEEEcCCCCE--EEEEeCCCeEEEEeCCCC-------------------------------------ceeEE
Q 005277          418 QGHSGPVYSASFSPLGDF--ILSSSADTTIRLWSTKLN-------------------------------------ANLVC  458 (704)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~--l~s~s~Dg~I~lwd~~~~-------------------------------------~~~~~  458 (704)
                      . ..+.|.|++|+|.+..  |+++-. .++.|-+..-|                                     .-++.
T Consensus       439 ~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~  516 (733)
T KOG0650|consen  439 Q-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCI  516 (733)
T ss_pred             e-ecceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEE
Confidence            2 3357999999997652  333322 23434332211                                     01223


Q ss_pred             eecCCcCeeEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005277          459 YKGHNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS  535 (704)
Q Consensus       459 ~~~h~~~V~~v~~sp~~~~l~sgs~---dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~  535 (704)
                      .-.|..+|..+.|+..|.||++...   ...|.|.++.......-|....+.|.++.|||...+|++++ ...|++||+.
T Consensus       517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~  595 (733)
T KOG0650|consen  517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLS  595 (733)
T ss_pred             EEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehh
Confidence            3357889999999999999999864   46789999987766666766778899999999999999986 5679999999


Q ss_pred             CCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehcccccccccccc
Q 005277          536 SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKV  614 (704)
Q Consensus       536 ~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~  614 (704)
                      .+..+..+......|.+++++|.|..|+.|+.|+.+..+|+.-+ ++.++++-|...+++++|                 
T Consensus       596 kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~-----------------  658 (733)
T KOG0650|consen  596 KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAF-----------------  658 (733)
T ss_pred             HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhh-----------------
Confidence            88887777777788999999999999999999999999999754 677888999999999999                 


Q ss_pred             ccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcC----eEEEEEcc
Q 005277          615 STGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP----VYSLQFSR  690 (704)
Q Consensus       615 ~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----V~~l~fs~  690 (704)
                                       ++.-.++++|+.||++.|+.-.--..+...      .-+-++..+++|...    |..+.|+|
T Consensus       659 -----------------H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qn------pliVPlK~L~gH~~~~~~gVLd~~wHP  715 (733)
T KOG0650|consen  659 -----------------HKRYPLFASGSDDGTVIVFHGMVYNDLLQN------PLIVPLKRLRGHEKTNDLGVLDTIWHP  715 (733)
T ss_pred             -----------------ccccceeeeecCCCcEEEEeeeeehhhhcC------CceEeeeeccCceeecccceEeecccC
Confidence                             888889999999999999974432221110      112346667777554    99999999


Q ss_pred             CCcEEEEeecCCC
Q 005277          691 RNLLFAAGALSKT  703 (704)
Q Consensus       691 ~g~~La~gs~dgt  703 (704)
                      ...+|.+++.||+
T Consensus       716 ~qpWLfsAGAd~t  728 (733)
T KOG0650|consen  716 RQPWLFSAGADGT  728 (733)
T ss_pred             CCceEEecCCCce
Confidence            9999999999986

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.3e-22  Score=204.48  Aligned_cols=260  Identities=20%  Similarity=0.303  Sum_probs=191.9

Q ss_pred             EEEEEcC-------CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC--CCccceeeccCCccCeE
Q 005277          355 NCASISQ-------DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN--GRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       355 ~~~~fs~-------dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~V~  425 (704)
                      .|++|-.       .|+++|.|+.|..|.|||+.-.......-.+.         ...+..  ...+....-.+|+..|.
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LG---------s~~sk~~~k~~k~~~~~~gHTdavl  247 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLG---------SKASKKKKKKGKRSNSASGHTDAVL  247 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeec---------hhhhhhhhhhcccccccccchHHHH
Confidence            5666643       37899999999999999987421110000000         000000  00111222457999999


Q ss_pred             EEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277          426 SASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       426 ~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~  503 (704)
                      +++|+..-+ .|+|||.|.+|++||+.++++..++..|...|.++.|+| ...++++|+.|++|.+.|++........-.
T Consensus       248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk  327 (463)
T KOG0270|consen  248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK  327 (463)
T ss_pred             HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence            999987654 678999999999999999999999999999999999999 577899999999999999986433333333


Q ss_pred             CCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCe
Q 005277          504 HLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       504 ~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      ..+.|..++|+|. ...+++++.||+|+-+|+|. ++++++...|.++|+++++++. ..++++++.|+.|++|++..-.
T Consensus       328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence            5578999999985 46778888999999999996 5999999999999999999985 4578899999999999986543


Q ss_pred             eeeeecCCC---ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC-CCEEEEEeCCCcEEEEeCCCCc
Q 005277          581 CVTPLMGHT---SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE-GSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       581 ~~~~~~~h~---~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                      .-. ...|.   +...|.++                                  .|+ ..+++.||..+.++|||+.+..
T Consensus       408 ~~~-v~~~~~~~~rl~c~~~----------------------------------~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  408 PKS-VKEHSFKLGRLHCFAL----------------------------------DPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             Ccc-cccccccccceeeccc----------------------------------CCCcceEEEecCccceEEEeecccCh
Confidence            311 11122   11222222                                  333 3477888888999999998876


Q ss_pred             cc
Q 005277          657 KV  658 (704)
Q Consensus       657 ~~  658 (704)
                      .+
T Consensus       453 ~V  454 (463)
T KOG0270|consen  453 PV  454 (463)
T ss_pred             hH
Confidence            54

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=4.1e-22  Score=210.34  Aligned_cols=327  Identities=24%  Similarity=0.348  Sum_probs=241.6

Q ss_pred             CeEeecCCCCCC-eEEEEEeeCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEEcccCCccccccccCCCCCCC-Ccccc
Q 005277          330 NRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGS---LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTT-PREDI  404 (704)
Q Consensus       330 ~~~~l~~~~~p~-~~~~~~~~~~~~V~~~~fs~dg~---~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~-~~~~~  404 (704)
                      ..+.+.+....+ .....+.+|.+-|.+++|..-+.   +||+|++|.+||||.+........  ......... +....
T Consensus       169 ~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~--~~~e~~~t~~~~~~~  246 (764)
T KOG1063|consen  169 FVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDS--NEREDSLTTLSNLPV  246 (764)
T ss_pred             eEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccc--cccccccccccCCce
Confidence            344554443222 33446789999999999987544   899999999999999865331110  000000000 00000


Q ss_pred             cCCCC----CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee----EE---eecCCcCeeEEEEcC
Q 005277          405 IGPNG----RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL----VC---YKGHNYPVWDVQFNP  473 (704)
Q Consensus       405 ~~~~~----~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~----~~---~~~h~~~V~~v~~sp  473 (704)
                      +....    .......+.||...|+++.|+|.+..|+++|.|.++.+|......-+    ..   ..+.....++..|+|
T Consensus       247 f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~  326 (764)
T KOG1063|consen  247 FMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP  326 (764)
T ss_pred             eeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC
Confidence            00000    00111346799999999999999999999999999999987755322    11   223455689999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCC---ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC---------------
Q 005277          474 QGHYFASSSHDRTARIWSMDRI---QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---------------  535 (704)
Q Consensus       474 ~~~~l~sgs~dg~i~lwd~~~~---~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~---------------  535 (704)
                      +++.+++-+..|..++|.....   .+...+.||...|..+.|+|.|.+|++.+.|.+-|++-.-               
T Consensus       327 n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH  406 (764)
T KOG1063|consen  327 NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH  406 (764)
T ss_pred             CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccc
Confidence            9999999999999999983321   3445567999999999999999999999999888876421               


Q ss_pred             ----------C----------CcEEE------------------------------------------------------
Q 005277          536 ----------S----------GECVR------------------------------------------------------  541 (704)
Q Consensus       536 ----------~----------~~~~~------------------------------------------------------  541 (704)
                                +          .+.++                                                      
T Consensus       407 GyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~  486 (764)
T KOG1063|consen  407 GYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAA  486 (764)
T ss_pred             cccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccc
Confidence                      0          00111                                                      


Q ss_pred             ---------------------------------EeecCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCeeee
Q 005277          542 ---------------------------------IFIGHRSMILSLAMSPDGRYMASGDED-----GTIMMWDLASGRCVT  583 (704)
Q Consensus       542 ---------------------------------~~~~h~~~i~~l~~spdg~~l~sg~~d-----g~I~iwdl~~~~~~~  583 (704)
                                                       .+.||...|++++.+|+|+++|+++..     ..|++|+..+...+.
T Consensus       487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~  566 (764)
T KOG1063|consen  487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ  566 (764)
T ss_pred             eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh
Confidence                                             024788899999999999999998854     469999999999999


Q ss_pred             eecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccc
Q 005277          584 PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEE  663 (704)
Q Consensus       584 ~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~  663 (704)
                      .+.+|+-.|+.+.|                                  ||||++|++.|.|.++.+|.........    
T Consensus       567 ~L~~HsLTVT~l~F----------------------------------Spdg~~LLsvsRDRt~sl~~~~~~~~~e----  608 (764)
T KOG1063|consen  567 ELEGHSLTVTRLAF----------------------------------SPDGRYLLSVSRDRTVSLYEVQEDIKDE----  608 (764)
T ss_pred             eecccceEEEEEEE----------------------------------CCCCcEEEEeecCceEEeeeeecccchh----
Confidence            99999999999999                                  9999999999999999999986543210    


Q ss_pred             ccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          664 KSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       664 ~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                             ........|..-|.+.+|+|++.++|++|.|++
T Consensus       609 -------~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~  641 (764)
T KOG1063|consen  609 -------FRFACLKAHTRIIWDCSWSPDEKYFATASRDKK  641 (764)
T ss_pred             -------hhhccccccceEEEEcccCcccceeEEecCCce
Confidence                   114457789999999999999999999999975

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=9.9e-23  Score=214.55  Aligned_cols=246  Identities=22%  Similarity=0.403  Sum_probs=212.5

Q ss_pred             eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      .....++.|++.||+|++||+|..-|.++||++..                            .........|...|.|+
T Consensus       456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~----------------------------l~~~~~~eAHesEilcL  507 (1080)
T KOG1408|consen  456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE----------------------------LEYTCFMEAHESEILCL  507 (1080)
T ss_pred             cCcccceEEEEECCCcceecccCccCceEEEEehh----------------------------hhhhhheecccceeEEE
Confidence            45567899999999999999999999999999976                            23345567899999999


Q ss_pred             EEcCC---CCEEEEEeCCCeEEEEeCCC-CceeEEeecCCcCeeEEEEcCCC--CEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          428 SFSPL---GDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQG--HYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       428 ~~sp~---~~~l~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~v~~sp~~--~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      .|+..   .++|++++.|..|+|+|+.. ...+.++.+|...|+++.|...|  ..+++++.|+.|.+-........+.+
T Consensus       508 eyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f  587 (1080)
T KOG1408|consen  508 EYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF  587 (1080)
T ss_pred             eecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceec
Confidence            99863   46899999999999999864 35677889999999999999877  67999999988766544433333444


Q ss_pred             ccCC-----CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec---CCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 005277          502 AGHL-----SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASGDEDGTIMM  573 (704)
Q Consensus       502 ~~~~-----~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~i~~l~~spdg~~l~sg~~dg~I~i  573 (704)
                      ..|.     ..+..++..|+.+++++++.|+.|+|||+.+|+.++.|++   |.+....+...|.|.||++.+.|.++.+
T Consensus       588 ~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~  667 (1080)
T KOG1408|consen  588 PRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCF  667 (1080)
T ss_pred             cccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEE
Confidence            3332     4577899999999999999999999999999999999975   5677888999999999999999999999


Q ss_pred             EeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277          574 WDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVT  653 (704)
Q Consensus       574 wdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~  653 (704)
                      +|..+|+++.++.||...|+.+.|                                  .+|-+.|++.+.||.|.||.+.
T Consensus       668 ~Df~sgEcvA~m~GHsE~VTG~kF----------------------------------~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  668 VDFVSGECVAQMTGHSEAVTGVKF----------------------------------LNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             EEeccchhhhhhcCcchheeeeee----------------------------------cccchhheeecCCceEEEEECc
Confidence            999999999999999999999999                                  9999999999999999999987


Q ss_pred             CC
Q 005277          654 TS  655 (704)
Q Consensus       654 ~~  655 (704)
                      ..
T Consensus       714 ~~  715 (1080)
T KOG1408|consen  714 LT  715 (1080)
T ss_pred             hh
Confidence            63

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=8.3e-21  Score=198.05  Aligned_cols=260  Identities=14%  Similarity=0.150  Sum_probs=190.1

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ..+.+|+...... ..++ .+...+.+++|+|+++.+ ++++.++.|++||+.+..                        
T Consensus        11 ~~v~~~d~~t~~~-~~~~-~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~------------------------   64 (300)
T TIGR03866        11 NTISVIDTATLEV-TRTF-PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE------------------------   64 (300)
T ss_pred             CEEEEEECCCCce-EEEE-ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc------------------------
Confidence            3566665433322 2233 334557889999999876 667789999999986521                        


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC-e
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILS-SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-T  486 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg-~  486 (704)
                          ....+..+. .+..++|+|+++.+++ ++.|+.|++||+.+.+.+..+.. ...+.+++|+|+|.++++++.++ .
T Consensus        65 ----~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~  138 (300)
T TIGR03866        65 ----VIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNM  138 (300)
T ss_pred             ----EEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCe
Confidence                112222232 2467899999997765 45689999999998877776653 33568899999999999988765 5


Q ss_pred             EEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecCC-------CCEEEEEEecC
Q 005277          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHR-------SMILSLAMSPD  558 (704)
Q Consensus       487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~-------~~i~~l~~spd  558 (704)
                      +.+||.++++....... .....+++|+|++.++++++ .++.|++||+.+++.+..+..+.       .....++|+|+
T Consensus       139 ~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d  217 (300)
T TIGR03866       139 AHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD  217 (300)
T ss_pred             EEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence            67789988776654432 34567899999999886554 68999999999998877654321       12356889999


Q ss_pred             CCEEEE-EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277          559 GRYMAS-GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL  637 (704)
Q Consensus       559 g~~l~s-g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  637 (704)
                      |+++++ .+.++.|.+||+.+++.+..+. +...+.++.|                                  +|+|.+
T Consensus       218 g~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~----------------------------------~~~g~~  262 (300)
T TIGR03866       218 GKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAF----------------------------------TPDEKY  262 (300)
T ss_pred             CCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEE----------------------------------CCCCCE
Confidence            998655 4556789999999888776553 4456888888                                  999999


Q ss_pred             EEEE-eCCCcEEEEeCCCCcc
Q 005277          638 LASG-SADCTVKLWDVTTSTK  657 (704)
Q Consensus       638 lasg-s~Dg~V~iWd~~~~~~  657 (704)
                      |+++ +.+|.|++||+.++..
T Consensus       263 l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       263 LLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             EEEEcCCCCeEEEEECCCCcE
Confidence            9876 5689999999998764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=3e-22  Score=197.72  Aligned_cols=219  Identities=28%  Similarity=0.473  Sum_probs=172.9

Q ss_pred             eeCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          348 INTHNGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       348 ~~~~~~V~~~~fs~d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      ..|.+.++.+.-++-  ..+.|+=+..|.|.||++...-....            ...........+.+..+.+|.+.=+
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~------------~~~~~~~~s~~~Pl~t~~ghk~EGy  215 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALS------------EPGLEVKDSEFRPLFTFNGHKGEGY  215 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhc------------CccccccccccCceEEecccCccce
Confidence            456666666666654  45666667789999999875211110            0111112244667788899999999


Q ss_pred             EEEEcCCCC-EEEEEeCCCeEEEEeCCCCcee---EEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCc--ee
Q 005277          426 SASFSPLGD-FILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ--PL  498 (704)
Q Consensus       426 ~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~---~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~--~~  498 (704)
                      +++|||-.. .|+||..-+.|++|...++.-.   ..+.+|+..|-+++||| ....|++||.||+|+|||++.+.  +.
T Consensus       216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~  295 (440)
T KOG0302|consen  216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA  295 (440)
T ss_pred             eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce
Confidence            999999433 4788888889999998886543   34668999999999999 56789999999999999999872  33


Q ss_pred             EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC---CcEEEEeecCCCCEEEEEEecC-CCEEEEEeCCCeEEEE
Q 005277          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS---GECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMW  574 (704)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~---~~~~~~~~~h~~~i~~l~~spd-g~~l~sg~~dg~I~iw  574 (704)
                      .....|.++|+.|.|+.+-.+||+|+.||+++|||+|+   ++++..|+-|..+|+++.|+|. ...|++++.|.+|.||
T Consensus       296 ~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW  375 (440)
T KOG0302|consen  296 VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW  375 (440)
T ss_pred             eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence            34478999999999999888999999999999999984   6788999999999999999994 5678889999999999


Q ss_pred             eCCC
Q 005277          575 DLAS  578 (704)
Q Consensus       575 dl~~  578 (704)
                      |+..
T Consensus       376 Dlsv  379 (440)
T KOG0302|consen  376 DLSV  379 (440)
T ss_pred             Eeec
Confidence            9864

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=3.1e-22  Score=197.61  Aligned_cols=254  Identities=20%  Similarity=0.371  Sum_probs=193.9

Q ss_pred             eeeccCCccCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCC----------------CceeEEeecCCcCeeEEEEcCC-
Q 005277          414 YTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKL----------------NANLVCYKGHNYPVWDVQFNPQ-  474 (704)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~~~--~l~s~s~Dg~I~lwd~~~----------------~~~~~~~~~h~~~V~~v~~sp~-  474 (704)
                      .....+|.+.++.+.-++-++  +.++-+..|.|.||++..                .+.+.++.+|...=..++|||- 
T Consensus       144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~  223 (440)
T KOG0302|consen  144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK  223 (440)
T ss_pred             cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence            344567888888888877654  555668899999999752                3457788899999999999993 


Q ss_pred             CCEEEEEeCCCeEEEEECCCCcee---EEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCC---cEEEEeecCC
Q 005277          475 GHYFASSSHDRTARIWSMDRIQPL---RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSG---ECVRIFIGHR  547 (704)
Q Consensus       475 ~~~l~sgs~dg~i~lwd~~~~~~~---~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~  547 (704)
                      ...+++|..-+.|++|...++.-.   +.+.+|...|..++|+|. ...|++||.||+|+|||+|.+   .++.+ +.|.
T Consensus       224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~  302 (440)
T KOG0302|consen  224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHN  302 (440)
T ss_pred             ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccC
Confidence            234888888899999998776432   446689999999999996 578899999999999999988   44544 7899


Q ss_pred             CCEEEEEEecCCCEEEEEeCCCeEEEEeCCC---CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeee
Q 005277          548 SMILSLAMSPDGRYMASGDEDGTIMMWDLAS---GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT  624 (704)
Q Consensus       548 ~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~---~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (704)
                      +.|+.|.|+.+-.+|++|+.||+++|||+++   ++++..+.-|..+|+++.|                           
T Consensus       303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW---------------------------  355 (440)
T KOG0302|consen  303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW---------------------------  355 (440)
T ss_pred             CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEe---------------------------
Confidence            9999999999888999999999999999985   5788999999999999999                           


Q ss_pred             EEeecccCCC-CCEEEEEeCCCcEEEEeCCCCccccccccccC---ccccccccccCCCCcCeEEEEEccCC-cEEEEee
Q 005277          625 IIYFGCASCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSG---TNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGA  699 (704)
Q Consensus       625 ~~~~~~~s~~-g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~V~~l~fs~~g-~~La~gs  699 (704)
                             +|. ...|+++|.|..|.|||+..............   ..-+.++..+......|..|+|++.. -+|++.+
T Consensus       356 -------~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa  428 (440)
T KOG0302|consen  356 -------HPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA  428 (440)
T ss_pred             -------ccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence                   554 56889999999999999976543221111100   00111222333345678899999875 3555555


Q ss_pred             cCC
Q 005277          700 LSK  702 (704)
Q Consensus       700 ~dg  702 (704)
                      .||
T Consensus       429 ~dG  431 (440)
T KOG0302|consen  429 IDG  431 (440)
T ss_pred             ccc
Confidence            554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=1.2e-20  Score=196.74  Aligned_cols=256  Identities=13%  Similarity=0.107  Sum_probs=189.3

Q ss_pred             CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE-EEEeC
Q 005277          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSA  441 (704)
Q Consensus       363 g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~  441 (704)
                      ++++++++.|+.|.+||+.+.                            .....+.+|. .+.+++|+|+++.+ ++++.
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~----------------------------~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~   51 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATL----------------------------EVTRTFPVGQ-RPRGITLSKDGKLLYVCASD   51 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCC----------------------------ceEEEEECCC-CCCceEECCCCCEEEEEECC
Confidence            357889999999999998652                            1223334443 36789999999976 56778


Q ss_pred             CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEE
Q 005277          442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI  520 (704)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg-s~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l  520 (704)
                      ++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.+++||+++.+.+..+.. ...+.+++|+|++.++
T Consensus        52 ~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l  129 (300)
T TIGR03866        52 SDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIV  129 (300)
T ss_pred             CCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEE
Confidence            89999999998888776765543 5678999999877654 5689999999998877776653 3456889999999999


Q ss_pred             EEEECCC-cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEeCCCCeeeeeecCCCc-----e--
Q 005277          521 ATGSSDK-TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGRCVTPLMGHTS-----C--  591 (704)
Q Consensus       521 ~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iwdl~~~~~~~~~~~h~~-----~--  591 (704)
                      ++++.++ .+.+||..+++....... ...+.+++|+|+|++|+++ ..+|.|.+||+.+++.+..+..+..     .  
T Consensus       130 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  208 (300)
T TIGR03866       130 VNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQ  208 (300)
T ss_pred             EEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCC
Confidence            9988765 467789988877665432 3456789999999988654 4689999999999887766543211     1  


Q ss_pred             eeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE-EeCCCcEEEEeCCCCccccccccccCcccc
Q 005277          592 VWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS-GSADCTVKLWDVTTSTKVLKTEEKSGTNRL  670 (704)
Q Consensus       592 V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las-gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~  670 (704)
                      ...+.|                                  +++++++++ .+.++.|.+||+.+++..            
T Consensus       209 ~~~i~~----------------------------------s~dg~~~~~~~~~~~~i~v~d~~~~~~~------------  242 (300)
T TIGR03866       209 PVGIKL----------------------------------TKDGKTAFVALGPANRVAVVDAKTYEVL------------  242 (300)
T ss_pred             ccceEE----------------------------------CCCCCEEEEEcCCCCeEEEEECCCCcEE------------
Confidence            123334                                  899988644 455778999999875432            


Q ss_pred             ccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277          671 RSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       671 ~~l~~~~~~~~~V~~l~fs~~g~~La~gs~  700 (704)
                         ..+ .+...+.+++|+|+|.+|++++.
T Consensus       243 ---~~~-~~~~~~~~~~~~~~g~~l~~~~~  268 (300)
T TIGR03866       243 ---DYL-LVGQRVWQLAFTPDEKYLLTTNG  268 (300)
T ss_pred             ---EEE-EeCCCcceEEECCCCCEEEEEcC
Confidence               111 12346889999999999988643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=5.4e-23  Score=201.96  Aligned_cols=237  Identities=20%  Similarity=0.303  Sum_probs=202.9

Q ss_pred             cceeeccCCccCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 005277          412 RSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW  490 (704)
Q Consensus       412 ~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lw  490 (704)
                      ..+..+.||...|+|++=+|.. ..++||+.||.|+|||+....+...+..|.+.|.+|++..  ..+++++.|++|+.|
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW  134 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence            3455678999999999999987 6789999999999999999999999999999999999985  679999999999999


Q ss_pred             ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC-CEEEEEeCCC
Q 005277          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDG  569 (704)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~l~sg~~dg  569 (704)
                      .++.. +++++.+ .+.+..+.-+..++.++|++.  .|.|||.....++..+.-....|.++.|+|.. ..|++++.|+
T Consensus       135 k~~~~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr  210 (433)
T KOG0268|consen  135 KIDGP-PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR  210 (433)
T ss_pred             eccCC-cceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence            98774 6666654 456777777777788888875  49999999999999998888899999999964 5677888999


Q ss_pred             eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                      .|.+||++++.++..+. -...-..++|                                  +|.+-.+++|++|..++.
T Consensus       211 sIvLyD~R~~~Pl~KVi-~~mRTN~Isw----------------------------------nPeafnF~~a~ED~nlY~  255 (433)
T KOG0268|consen  211 SIVLYDLRQASPLKKVI-LTMRTNTICW----------------------------------NPEAFNFVAANEDHNLYT  255 (433)
T ss_pred             ceEEEecccCCccceee-eeccccceec----------------------------------Cccccceeecccccccee
Confidence            99999999998876653 1223356677                                  998888999999999999


Q ss_pred             EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      +|+..-.              .++..+.+|.+.|.+|.|||.|+-+++||+|.|
T Consensus       256 ~DmR~l~--------------~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks  295 (433)
T KOG0268|consen  256 YDMRNLS--------------RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS  295 (433)
T ss_pred             hhhhhhc--------------ccchhhcccceeEEEeccCCCcchhccccccce
Confidence            9998754              347788899999999999999999999999986

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=5e-21  Score=184.62  Aligned_cols=255  Identities=17%  Similarity=0.315  Sum_probs=196.3

Q ss_pred             cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CceeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEEE
Q 005277          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWS  491 (704)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lwd  491 (704)
                      .+|..-|.++.|.+.|+.+++|+.|++|+|||...    ..+....+.|.+.|+.|.|.+  -|+.+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            47889999999999999999999999999999643    345667889999999999977  699999999999999997


Q ss_pred             CCC---------CceeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCcEE------EEee-------cCC
Q 005277          492 MDR---------IQPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECV------RIFI-------GHR  547 (704)
Q Consensus       492 ~~~---------~~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~------~~~~-------~h~  547 (704)
                      -..         .....++....+.|+.|+|.|.  |-.||+++.||.+|||+...--.+      ..+.       .+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            521         1233455667789999999985  788999999999999987543222      2222       355


Q ss_pred             CCEEEEEEecC---CCEEEEEeCC-----CeEEEEeCCCC----eeeeeecCCCceeeeeeeeeeehccccccccccccc
Q 005277          548 SMILSLAMSPD---GRYMASGDED-----GTIMMWDLASG----RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVS  615 (704)
Q Consensus       548 ~~i~~l~~spd---g~~l~sg~~d-----g~I~iwdl~~~----~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~  615 (704)
                      .+..|+.|+|.   ..+|++|+.+     +.+.||....+    ..+.++.+|..+|++++|.+..              
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~--------------  235 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI--------------  235 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc--------------
Confidence            67889999983   4678888766     57889976543    4567788999999999993210              


Q ss_pred             cceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccc-----ccCccccccccccCCCCcCeEEEEEcc
Q 005277          616 TGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEE-----KSGTNRLRSLKTLPTKSTPVYSLQFSR  690 (704)
Q Consensus       616 ~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~V~~l~fs~  690 (704)
                                      ...-.+||+++.|| |+||.+..........+     ....-....+..+..|++.|..+.|+-
T Consensus       236 ----------------Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm  298 (361)
T KOG2445|consen  236 ----------------GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM  298 (361)
T ss_pred             ----------------CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee
Confidence                            11235899999999 99999985332211111     111223356778899999999999999


Q ss_pred             CCcEEEEeecCCC
Q 005277          691 RNLLFAAGALSKT  703 (704)
Q Consensus       691 ~g~~La~gs~dgt  703 (704)
                      .|.+|++.+.||+
T Consensus       299 tGtiLsStGdDG~  311 (361)
T KOG2445|consen  299 TGTILSSTGDDGC  311 (361)
T ss_pred             eeeEEeecCCCce
Confidence            9999999999996

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.88  E-value=3e-20  Score=189.59  Aligned_cols=339  Identities=19%  Similarity=0.214  Sum_probs=235.1

Q ss_pred             hccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCC------CCC
Q 005277          327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND------TTP  400 (704)
Q Consensus       327 ~~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~------~~~  400 (704)
                      +....+.+|+...-.+.... +.|.++|.|+..-.+|.+|- |+.|..|..||-+- ....... .+....      ...
T Consensus       264 DS~G~i~Iw~~~~~~~~k~~-~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y-~k~r~~e-lPe~~G~iRtv~e~~  339 (626)
T KOG2106|consen  264 DSGGNILIWSKGTNRISKQV-HAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNY-RKLRETE-LPEQFGPIRTVAEGK  339 (626)
T ss_pred             cCCceEEEEeCCCceEEeEe-eecCCceEEEEEecCccEee-cCccceEEeccccc-ccccccc-CchhcCCeeEEecCC
Confidence            44556677776554444444 48999999999999998776 99999999999321 1111000 000000      000


Q ss_pred             cccccCC--------CCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEc
Q 005277          401 REDIIGP--------NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN  472 (704)
Q Consensus       401 ~~~~~~~--------~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~s  472 (704)
                      .....+.        .-.........+|......++.+|+.+.+++++.|+.+++|+  ..+...+.. ...++.++.|+
T Consensus       340 ~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fh  416 (626)
T KOG2106|consen  340 GDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFH  416 (626)
T ss_pred             CcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeecc
Confidence            0011111        111223344568999999999999999999999999999999  344444333 46789999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEE-eecCCCCE
Q 005277          473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRI-FIGHRSMI  550 (704)
Q Consensus       473 p~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~-~~~h~~~i  550 (704)
                      |.| .+|.|+..|...+.|.++...+..... ..++++++|+|+|.+||.|+.|+.|++|-+.. |..... -..+..+|
T Consensus       417 psg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~i  494 (626)
T KOG2106|consen  417 PSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPI  494 (626)
T ss_pred             Ccc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCcee
Confidence            999 999999999999999999776666665 89999999999999999999999999998864 333322 23344899


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277          551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC  630 (704)
Q Consensus       551 ~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (704)
                      +.+.||+|+++|.+-+.|-.|..|.....+.+..       +..+.|....+.-+ +..        +.......+..++
T Consensus       495 thLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts-------~kDvkW~t~~c~lG-F~v--------~g~s~~t~i~a~~  558 (626)
T KOG2106|consen  495 THLDWSSDSQFLVSNSGDYEILYWKPSECKQITS-------VKDVKWATYTCTLG-FEV--------FGGSDGTDINAVA  558 (626)
T ss_pred             EEeeecCCCceEEeccCceEEEEEccccCcccce-------ecceeeeeeEEEEE-EEE--------ecccCCchHHHhh
Confidence            9999999999999999999999995443333322       55555521110000 000        0011122334445


Q ss_pred             cCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       631 ~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      -+...+++|+|...|.|++|...-.+..            .....+.+|.+-|.+|+|......|.+.+.|.
T Consensus       559 rs~~~~~lA~gdd~g~v~lf~yPc~s~r------------A~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~  618 (626)
T KOG2106|consen  559 RSHCEKLLASGDDFGKVHLFSYPCSSPR------------APSHEYGGHSSHVTNVAFLCKDSHLISTGKDT  618 (626)
T ss_pred             hhhhhhhhhccccCceEEEEccccCCCc------------ccceeeccccceeEEEEEeeCCceEEecCCCc
Confidence            5788999999999999999987654321            23456778999999999998777776666554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.88  E-value=2.7e-20  Score=200.32  Aligned_cols=314  Identities=18%  Similarity=0.286  Sum_probs=243.5

Q ss_pred             hccCeEeecCCCCCCeE---EEEEeeC-CCCEEEEEEcCC--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCC
Q 005277          327 DLRNRVHLSSAALPSVS---FYTFINT-HNGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTP  400 (704)
Q Consensus       327 ~~~~~~~l~~~~~p~~~---~~~~~~~-~~~V~~~~fs~d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~  400 (704)
                      +....+++|....+...   ..++..- .+.|+++. +|.  -+.++.|+..|.++||++.+                  
T Consensus       131 d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt------------------  191 (910)
T KOG1539|consen  131 DISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRT------------------  191 (910)
T ss_pred             EccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEecc------------------
Confidence            34456677766554221   1233332 33377664 554  56789999999999999987                  


Q ss_pred             cccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCE-EE
Q 005277          401 REDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FA  479 (704)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~-l~  479 (704)
                                .+.+..+.++...|+++.=+|-=..++.|..+|+|.++++..++.+.+++...++|++++|..||+. ++
T Consensus       192 ----------~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~la  261 (910)
T KOG1539|consen  192 ----------GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLA  261 (910)
T ss_pred             ----------CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEE
Confidence                      5677888899999999999999999999999999999999999999999955699999999999876 56


Q ss_pred             EEeCCCeEEEEECCCCceeEEec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-----------------EEE
Q 005277          480 SSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-----------------CVR  541 (704)
Q Consensus       480 sgs~dg~i~lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-----------------~~~  541 (704)
                      +|+..|.+.+||++..+.+.... .|.+.|....|.|....+++++.|..+++|=..++.                 +++
T Consensus       262 s~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~ir  341 (910)
T KOG1539|consen  262 SGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIR  341 (910)
T ss_pred             eccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhee
Confidence            77777999999999887776655 788888888888888888888888887777332110                 000


Q ss_pred             E-------------------------------------------------------------------------------
Q 005277          542 I-------------------------------------------------------------------------------  542 (704)
Q Consensus       542 ~-------------------------------------------------------------------------------  542 (704)
                      .                                                                               
T Consensus       342 fy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~  421 (910)
T KOG1539|consen  342 FYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGK  421 (910)
T ss_pred             eeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCc
Confidence            0                                                                               


Q ss_pred             ----------------eecCC------CCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee---cCCCceeeeeee
Q 005277          543 ----------------FIGHR------SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL---MGHTSCVWTLAY  597 (704)
Q Consensus       543 ----------------~~~h~------~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~---~~h~~~V~sl~~  597 (704)
                                      .-.+.      ..+++++.+++|++.+.|...|.|-+|++.+|-....+   ..|.++|+.++.
T Consensus       422 ~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~  501 (910)
T KOG1539|consen  422 RSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAV  501 (910)
T ss_pred             ceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEe
Confidence                            00122      46889999999999999999999999999999888888   589999999988


Q ss_pred             eeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccccc------------
Q 005277          598 RFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS------------  665 (704)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~------------  665 (704)
                                                        ..-++.+++++.+|.+++||+..........-..            
T Consensus       502 ----------------------------------D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~  547 (910)
T KOG1539|consen  502 ----------------------------------DGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD  547 (910)
T ss_pred             ----------------------------------cCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence                                              6677889999999999999998876332221100            


Q ss_pred             --------------CccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          666 --------------GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       666 --------------~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                    ...+.+.+..+.+|...|+++.|||||++|++++.|++
T Consensus       548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t  599 (910)
T KOG1539|consen  548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST  599 (910)
T ss_pred             hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc
Confidence                          01112345668899999999999999999999999986

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=3.7e-21  Score=184.13  Aligned_cols=207  Identities=28%  Similarity=0.498  Sum_probs=173.0

Q ss_pred             cCCccCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCce----------eE-----EeecCCcCeeEEEEcC-CCCEEEE
Q 005277          418 QGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNAN----------LV-----CYKGHNYPVWDVQFNP-QGHYFAS  480 (704)
Q Consensus       418 ~~h~~~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~----------~~-----~~~~h~~~V~~v~~sp-~~~~l~s  480 (704)
                      ..|.+.|+++...+ .|+++++|+.||.|.+||++....          +.     .-.+|...|.++.|-| |..+|.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            45889999999987 578999999999999999975431          11     1136889999999999 6678999


Q ss_pred             EeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcC---CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec
Q 005277          481 SSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP  557 (704)
Q Consensus       481 gs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p---~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp  557 (704)
                      ++.|.++++||.++.+....|. ..+.|.+-+|+|   ...++|+|..+-.|++.|+.+|.+.+.+.||.+.|.++.|+|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp  198 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP  198 (397)
T ss_pred             ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence            9999999999999988877776 457788888887   356889999999999999999999999999999999999999


Q ss_pred             CCCE-EEEEeCCCeEEEEeCCCC-eeeeee--------------cCCCceeeeeeeeeeehccccccccccccccceeee
Q 005277          558 DGRY-MASGDEDGTIMMWDLASG-RCVTPL--------------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFY  621 (704)
Q Consensus       558 dg~~-l~sg~~dg~I~iwdl~~~-~~~~~~--------------~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (704)
                      ...+ |++|+.||.|++||++.. .+...+              .+|.+.|..++|                        
T Consensus       199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~------------------------  254 (397)
T KOG4283|consen  199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAW------------------------  254 (397)
T ss_pred             CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeee------------------------
Confidence            7765 678999999999999854 333333              345666777777                        


Q ss_pred             eeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 005277          622 SLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL  659 (704)
Q Consensus       622 ~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~  659 (704)
                                +.++.++++++.|..+++|+..++....
T Consensus       255 ----------tSd~~~l~~~gtd~r~r~wn~~~G~ntl  282 (397)
T KOG4283|consen  255 ----------TSDARYLASCGTDDRIRVWNMESGRNTL  282 (397)
T ss_pred             ----------cccchhhhhccCccceEEeecccCcccc
Confidence                      9999999999999999999999887543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=3.6e-21  Score=201.52  Aligned_cols=272  Identities=18%  Similarity=0.279  Sum_probs=201.2

Q ss_pred             CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeC
Q 005277          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA  441 (704)
Q Consensus       362 dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~  441 (704)
                      ...+||.+..||.|.++|.....-.                      ........+..|.+.|..+.|.|....|++++.
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr----------------------~ee~~lk~~~aH~nAifDl~wapge~~lVsasG  120 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFR----------------------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASG  120 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcc----------------------hhhhhhcccccccceeEeeccCCCceeEEEccC
Confidence            3678999999999999998752211                      113345667789999999999996668899999


Q ss_pred             CCeEEEEeCCCCceeEE--eecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCc--------------------e-
Q 005277          442 DTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ--------------------P-  497 (704)
Q Consensus       442 Dg~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~--------------------~-  497 (704)
                      |.++++||+.+...+..  +.+|.+.|.+++|.| +...|++|+.||.+.|||++...                    + 
T Consensus       121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps  200 (720)
T KOG0321|consen  121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS  200 (720)
T ss_pred             CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence            99999999999888766  899999999999999 55679999999999999986321                    1 


Q ss_pred             ------eEEeccCCCCeeE---EEEcCCCCEEEEEEC-CCcEEEEeCCCCcEEEE--------eecC---CCCEEEEEEe
Q 005277          498 ------LRIMAGHLSDVDC---VRWHINCNYIATGSS-DKTVRLWDVSSGECVRI--------FIGH---RSMILSLAMS  556 (704)
Q Consensus       498 ------~~~~~~~~~~V~~---v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~--------~~~h---~~~i~~l~~s  556 (704)
                            ++....+...|.+   +.+..|...||+++. |+.|++||++.......        +..|   ...+.++...
T Consensus       201 kp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD  280 (720)
T KOG0321|consen  201 KPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD  280 (720)
T ss_pred             chhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence                  1111223334444   444577888888777 99999999987543321        2223   3357788888


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCe--eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC
Q 005277          557 PDGRYMASGDEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE  634 (704)
Q Consensus       557 pdg~~l~sg~~dg~I~iwdl~~~~--~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  634 (704)
                      ..|.+|.+.+.|+.|++|++.+..  ++..+.++...-..+.                                .+.+|+
T Consensus       281 ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk--------------------------------s~lSpd  328 (720)
T KOG0321|consen  281 SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK--------------------------------SELSPD  328 (720)
T ss_pred             CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeee--------------------------------eecCCC
Confidence            889999999999999999997642  3344444332111111                                123999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccC--CcEEEEeecCC
Q 005277          635 GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR--NLLFAAGALSK  702 (704)
Q Consensus       635 g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~--g~~La~gs~dg  702 (704)
                      +.++++|+.|...++|.+.+...              ....+.+|...|++|+|.|.  ..++++ +.|.
T Consensus       329 ~~~l~SgSsd~~ayiw~vs~~e~--------------~~~~l~Ght~eVt~V~w~pS~~t~v~Tc-SdD~  383 (720)
T KOG0321|consen  329 DCSLLSGSSDEQAYIWVVSSPEA--------------PPALLLGHTREVTTVRWLPSATTPVATC-SDDF  383 (720)
T ss_pred             CceEeccCCCcceeeeeecCccC--------------ChhhhhCcceEEEEEeeccccCCCceee-ccCc
Confidence            99999999999999999998764              35567788999999999764  455544 6553

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=1.1e-20  Score=182.77  Aligned_cols=232  Identities=19%  Similarity=0.260  Sum_probs=191.6

Q ss_pred             EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      .....|..++.+++|.++ ..+++|+.||.|+.+|+.+.                             ....+..|..+|
T Consensus        48 ~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~-----------------------------~~~~igth~~~i   97 (323)
T KOG1036|consen   48 KLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG-----------------------------NEDQIGTHDEGI   97 (323)
T ss_pred             hhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCC-----------------------------cceeeccCCCce
Confidence            345678999999999875 56889999999999999862                             234456799999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe--c
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM--A  502 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~--~  502 (704)
                      .|+.+++....+++||+|++|++||.+.......+. ....|.++..+  |+.|++|+.|..+.+||+++.......  .
T Consensus        98 ~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS  174 (323)
T KOG1036|consen   98 RCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRES  174 (323)
T ss_pred             EEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccc
Confidence            999999988899999999999999999755555554 34478888775  788999999999999999875533221  2


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC----cEEEEeecCCC---------CEEEEEEecCCCEEEEEeCCC
Q 005277          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG----ECVRIFIGHRS---------MILSLAMSPDGRYMASGDEDG  569 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~----~~~~~~~~h~~---------~i~~l~~spdg~~l~sg~~dg  569 (704)
                      .-.-.+.||++-|++.=.++++-||.|.+=.+...    +....|+.|..         +|++|+|+|-...|+||+.||
T Consensus       175 ~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG  254 (323)
T KOG1036|consen  175 SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG  254 (323)
T ss_pred             cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc
Confidence            34457899999999888999999999998777654    33345555542         799999999999999999999


Q ss_pred             eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA  643 (704)
Q Consensus       570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~  643 (704)
                      .|.+||+.+.+.+..+......|.+++|                                  +.+|..||+++.
T Consensus       255 ~V~~Wd~~~rKrl~q~~~~~~SI~slsf----------------------------------s~dG~~LAia~s  294 (323)
T KOG1036|consen  255 IVNIWDLFNRKRLKQLAKYETSISSLSF----------------------------------SMDGSLLAIASS  294 (323)
T ss_pred             eEEEccCcchhhhhhccCCCCceEEEEe----------------------------------ccCCCeEEEEec
Confidence            9999999999999999888888999999                                  999999999874

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.88  E-value=6.6e-20  Score=187.10  Aligned_cols=273  Identities=18%  Similarity=0.269  Sum_probs=214.2

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC-CccCeEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-HSGPVYSAS  428 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~  428 (704)
                      .++.|..+.|+|...-|...+..|.+..|++.+......                         .-.+.. ...-|.|++
T Consensus       199 sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~-------------------------~~~fek~ekk~Vl~v~  253 (626)
T KOG2106|consen  199 SNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR-------------------------QGIFEKREKKFVLCVT  253 (626)
T ss_pred             ccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE-------------------------eeccccccceEEEEEE
Confidence            456788999999776666666789999998876332211                         111111 225799999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------ce
Q 005277          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-----------QP  497 (704)
Q Consensus       429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-----------~~  497 (704)
                      |.++|+ +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.++ +|+.|+.|..||-+-.           .+
T Consensus       254 F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~  331 (626)
T KOG2106|consen  254 FLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGP  331 (626)
T ss_pred             EcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCC
Confidence            999987 7899999999999999888877777999999999999999755 5999999999984310           01


Q ss_pred             e-----------------------------EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC
Q 005277          498 L-----------------------------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS  548 (704)
Q Consensus       498 ~-----------------------------~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~  548 (704)
                      +                             ....+|......++.||+.+.++|++.|+.+++|+  ..++.... .-..
T Consensus       332 iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d  408 (626)
T KOG2106|consen  332 IRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIED  408 (626)
T ss_pred             eeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecC
Confidence            1                             11246777888899999999999999999999999  44544433 3457


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF  628 (704)
Q Consensus       549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (704)
                      ++.|+.|+|.| .++.|...|...+.|..+...+..-.. ..++..+.|                               
T Consensus       409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~y-------------------------------  455 (626)
T KOG2106|consen  409 PAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRY-------------------------------  455 (626)
T ss_pred             ceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEE-------------------------------
Confidence            88999999999 999999999999999998666655444 889999999                               


Q ss_pred             cccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          629 GCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       629 ~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                         +|+|.+||.|+.|+.|+||.+..+.....           .+...  +.++|+.+.||+|+++|.+-+-|
T Consensus       456 ---sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~-----------r~~k~--~gs~ithLDwS~Ds~~~~~~S~d  512 (626)
T KOG2106|consen  456 ---SPDGAFLAVGSHDNHIYIYRVSANGRKYS-----------RVGKC--SGSPITHLDWSSDSQFLVSNSGD  512 (626)
T ss_pred             ---cCCCCEEEEecCCCeEEEEEECCCCcEEE-----------Eeeee--cCceeEEeeecCCCceEEeccCc
Confidence               99999999999999999999987654321           12222  23899999999999999876543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.3e-20  Score=205.09  Aligned_cols=236  Identities=24%  Similarity=0.333  Sum_probs=201.4

Q ss_pred             cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 005277          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (704)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~  496 (704)
                      .+|....+.|+|.|+|.+|++|+.||.|++|+.... ..-..+..+...|.+++.  .+.+|++|+.+++|.+|.+..+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence            479999999999999999999999999999998766 333444447777877776  46699999999999999999988


Q ss_pred             eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                      .-..+....-++++++|+.+|+++|.|+.|-.|++.++.+......+.+|.++|.++.|+|.+++||+.+.||.|+|||+
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~  167 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL  167 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence            87777777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeeeecCC--------CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEE
Q 005277          577 ASGRCVTPLMGH--------TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVK  648 (704)
Q Consensus       577 ~~~~~~~~~~~h--------~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~  648 (704)
                      .++.+..++.+-        ...+..++|                                  +|+|..++..+.|+.|+
T Consensus       168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW----------------------------------~Pk~g~la~~~~d~~Vk  213 (933)
T KOG1274|consen  168 QDGILSKTLTGVDKDNEFILSRICTRLAW----------------------------------HPKGGTLAVPPVDNTVK  213 (933)
T ss_pred             ccchhhhhcccCCccccccccceeeeeee----------------------------------cCCCCeEEeeccCCeEE
Confidence            998877766432        234556667                                  99999999999999999


Q ss_pred             EEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          649 LWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       649 iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      +|+..........             ....+.+.+..++|+|.|.|||+++.+|
T Consensus       214 vy~r~~we~~f~L-------------r~~~~ss~~~~~~wsPnG~YiAAs~~~g  254 (933)
T KOG1274|consen  214 VYSRKGWELQFKL-------------RDKLSSSKFSDLQWSPNGKYIAASTLDG  254 (933)
T ss_pred             EEccCCceeheee-------------cccccccceEEEEEcCCCcEEeeeccCC
Confidence            9999887653222             1122334499999999999999999887

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=5.7e-21  Score=194.22  Aligned_cols=290  Identities=17%  Similarity=0.209  Sum_probs=221.6

Q ss_pred             ccCeEeecCCCC-CCeEEEEEeeCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277          328 LRNRVHLSSAAL-PSVSFYTFINTHNGLNCASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (704)
Q Consensus       328 ~~~~~~l~~~~~-p~~~~~~~~~~~~~V~~~~fs~dg~~-lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (704)
                      ..+.+++|+.+. .....|......-++.++.|+....+ +|+.+.|..|++|.-.+..                     
T Consensus        10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~---------------------   68 (673)
T KOG4378|consen   10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT---------------------   68 (673)
T ss_pred             cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCC---------------------
Confidence            345677776633 33334444455567999999887642 2333457889999755410                     


Q ss_pred             CCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (704)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg  485 (704)
                         +.........|.  .-.|++......|+++|+..++|+|||++...+.+.+++|...|+++.++....|+|+++..|
T Consensus        69 ---~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gG  143 (673)
T KOG4378|consen   69 ---PEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGG  143 (673)
T ss_pred             ---Cccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCC
Confidence               001122222232  223444444458999999999999999997777888899999999999999999999999999


Q ss_pred             eEEEEECCCCceeEEeccC-CCCeeEEEEcCCCCE-EEEEECCCcEEEEeCCCCcEEEEe-ecCCCCEEEEEEecC-CCE
Q 005277          486 TARIWSMDRIQPLRIMAGH-LSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPD-GRY  561 (704)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~-~~~V~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~i~~l~~spd-g~~  561 (704)
                      .|.|..+.++.....|... ...|.-+.|||..+. |.+++.+|.|.+||+....++..+ ..|..+...|+|+|. ..+
T Consensus       144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l  223 (673)
T KOG4378|consen  144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL  223 (673)
T ss_pred             cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence            9999999988777777644 345668999997655 456889999999999877766544 579999999999994 567


Q ss_pred             EEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEE
Q 005277          562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG  641 (704)
Q Consensus       562 l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasg  641 (704)
                      |++.|.|..|.+||.+..+....+. ...+...++|                                  +++|.+|+.|
T Consensus       224 ~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf----------------------------------~~~G~~L~aG  268 (673)
T KOG4378|consen  224 LVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAF----------------------------------SECGTYLCAG  268 (673)
T ss_pred             EEEecccceEEEeecccccccceee-ecCCcceeee----------------------------------cCCceEEEee
Confidence            8899999999999998776655553 4567788888                                  9999999999


Q ss_pred             eCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCC
Q 005277          642 SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN  692 (704)
Q Consensus       642 s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g  692 (704)
                      +..|.|..||+...+              .++..+..|...|++|+|-+.-
T Consensus       269 ~s~G~~i~YD~R~~k--------------~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  269 NSKGELIAYDMRSTK--------------APVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cCCceEEEEecccCC--------------CCceEeeecccceeEEEeeecc
Confidence            999999999998865              3477788899999999998765

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=1.8e-20  Score=180.38  Aligned_cols=237  Identities=19%  Similarity=0.242  Sum_probs=188.8

Q ss_pred             cCeEeecCCCC-CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277          329 RNRVHLSSAAL-PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (704)
Q Consensus       329 ~~~~~l~~~~~-p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (704)
                      ...+++|...- .........+|.++|.|++|+.||..+++|+.|+.+++||+.+.                        
T Consensus        49 D~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~------------------------  104 (347)
T KOG0647|consen   49 DGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG------------------------  104 (347)
T ss_pred             CCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC------------------------
Confidence            34556654322 11111346789999999999999999999999999999999862                        


Q ss_pred             CCCccceeeccCCccCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277          408 NGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (704)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg  485 (704)
                           .......|.++|.++.|-+...  .|++||.|++|+.||++....+.++.- ...|.++..  ...+++++..++
T Consensus       105 -----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~r  176 (347)
T KOG0647|consen  105 -----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAER  176 (347)
T ss_pred             -----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecCC
Confidence                 3345567999999999988766  799999999999999998888887763 445666655  356788899999


Q ss_pred             eEEEEECCCCcee--EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--cEEEEeecCCC---------CEEE
Q 005277          486 TARIWSMDRIQPL--RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRS---------MILS  552 (704)
Q Consensus       486 ~i~lwd~~~~~~~--~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~~h~~---------~i~~  552 (704)
                      .|.+|+++++...  +....-.-.+.||+..++..-.+.|+-.|.+.+..+..+  +.-..|+.|..         .|.+
T Consensus       177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs  256 (347)
T KOG0647|consen  177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS  256 (347)
T ss_pred             cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence            9999999765322  112223456899999999888899999999999998876  33344555552         5788


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277          553 LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       553 l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      |+|+|.-..|+++|.||++.+||-.....+.....|..+|++..|
T Consensus       257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~f  301 (347)
T KOG0647|consen  257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSF  301 (347)
T ss_pred             eEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEe
Confidence            999999999999999999999999888889999999999999999

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.87  E-value=2.1e-20  Score=186.68  Aligned_cols=303  Identities=16%  Similarity=0.268  Sum_probs=216.9

Q ss_pred             CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          350 THNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      .+.+|.++.|.+++. .||+|+.|..|+||.+.......                   ..........+..|...|+++.
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~-------------------~~~~V~y~s~Ls~H~~aVN~vR   72 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG-------------------GDMKVEYLSSLSRHTRAVNVVR   72 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCC-------------------CceeEEEeecccCCcceeEEEE
Confidence            457899999999866 99999999999999987522111                   0012334566889999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCC--------C--------CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005277          429 FSPLGDFILSSSADTTIRLWSTK--------L--------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (704)
Q Consensus       429 ~sp~~~~l~s~s~Dg~I~lwd~~--------~--------~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~  492 (704)
                      |+|+|+.|+||+.+|.|.+|-..        +        +.......+|...|.+++|+|++.++++++.|..+++||+
T Consensus        73 f~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv  152 (434)
T KOG1009|consen   73 FSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV  152 (434)
T ss_pred             EcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe
Confidence            99999999999999999999765        2        2234556789999999999999999999999999999999


Q ss_pred             CCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee----------c---------CC----CC
Q 005277          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI----------G---------HR----SM  549 (704)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~----------~---------h~----~~  549 (704)
                      ..+.....+..|...|..++|.|-++++++-+.|...+.+++...+.+....          .         |.    .-
T Consensus       153 ~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksF  232 (434)
T KOG1009|consen  153 HAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSF  232 (434)
T ss_pred             ccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhh
Confidence            9999999999999999999999999999999999877777765433222110          0         11    12


Q ss_pred             EEEEEEecCCCEEEEEeC----CC-----eEEEEeCCC-CeeeeeecCCCceeeeeeeeeeehcccccccccccccccee
Q 005277          550 ILSLAMSPDGRYMASGDE----DG-----TIMMWDLAS-GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFL  619 (704)
Q Consensus       550 i~~l~~spdg~~l~sg~~----dg-----~I~iwdl~~-~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~  619 (704)
                      ...++|+|||..|++.+.    +|     ..++++-.. .++...+.+...++..+.+.++..--.+......       
T Consensus       233 FrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~-------  305 (434)
T KOG1009|consen  233 FRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKF-------  305 (434)
T ss_pred             hhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccc-------
Confidence            345789999999987542    22     223443221 2445555555555555555433222111100000       


Q ss_pred             eeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          620 FYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       620 ~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                            +   -.-|.+..+|.++. +.|.|||.++..+...              .-.-|-..|+.++|+++|..|+..|
T Consensus       306 ------~---~~lpyrlvfaiAt~-~svyvydtq~~~P~~~--------------v~nihy~~iTDiaws~dg~~l~vSS  361 (434)
T KOG1009|consen  306 ------L---FVLPYRLVFAIATK-NSVYVYDTQTLEPLAV--------------VDNIHYSAITDIAWSDDGSVLLVSS  361 (434)
T ss_pred             ------c---cccccceEEEEeec-ceEEEeccccccceEE--------------EeeeeeeeecceeecCCCcEEEEec
Confidence                  0   00344556666665 5899999988654321              1223667899999999999999999


Q ss_pred             cCC
Q 005277          700 LSK  702 (704)
Q Consensus       700 ~dg  702 (704)
                      .||
T Consensus       362 ~DG  364 (434)
T KOG1009|consen  362 TDG  364 (434)
T ss_pred             cCC
Confidence            997

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=3e-20  Score=179.78  Aligned_cols=241  Identities=25%  Similarity=0.366  Sum_probs=180.0

Q ss_pred             eccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EEee--cCCcCeeEEEEcCCCCEEEEE-eCCCeEEEE
Q 005277          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL--VCYK--GHNYPVWDVQFNPQGHYFASS-SHDRTARIW  490 (704)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~--~~~~--~h~~~V~~v~~sp~~~~l~sg-s~dg~i~lw  490 (704)
                      .+.||.+.|++++|+.||++|++++.|++|++|+++.....  ..++  -.-...+.+.|+||-+-++.. -...++++|
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            47899999999999999999999999999999999864321  1111  112245789999987765554 456789999


Q ss_pred             ECCCCc---e---------eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC
Q 005277          491 SMDRIQ---P---------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD  558 (704)
Q Consensus       491 d~~~~~---~---------~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd  558 (704)
                      -+...+   .         ...-..|..++..+-...++.+|++++.|..|.+||++ |+.+..+......-+..+.||+
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~  239 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD  239 (420)
T ss_pred             EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence            875321   1         01122455566666666788999999999999999998 8888888766667788899999


Q ss_pred             CCEEEEEeCCCeEEEEeCC---CC-----eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277          559 GRYMASGDEDGTIMMWDLA---SG-----RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC  630 (704)
Q Consensus       559 g~~l~sg~~dg~I~iwdl~---~~-----~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (704)
                      |+++++++-.-.|++|.+-   .|     ..+..+.||...|..++|                                 
T Consensus       240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF---------------------------------  286 (420)
T KOG2096|consen  240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF---------------------------------  286 (420)
T ss_pred             CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee---------------------------------
Confidence            9999999999999999863   22     345678899999999999                                 


Q ss_pred             cCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccc----cCC-CCcCeEEEEEccCCcEEEEeec
Q 005277          631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT----LPT-KSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       631 ~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~----~~~-~~~~V~~l~fs~~g~~La~gs~  700 (704)
                       ++++..++|.|.||+++|||.+-......        .+..+..    +.. ...|+ .+..+|.|..||.+..
T Consensus       287 -sn~S~r~vtvSkDG~wriwdtdVrY~~~q--------Dpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~g  351 (420)
T KOG2096|consen  287 -SNSSTRAVTVSKDGKWRIWDTDVRYEAGQ--------DPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSFG  351 (420)
T ss_pred             -CCCcceeEEEecCCcEEEeeccceEecCC--------CchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeecC
Confidence             99999999999999999999875332110        0111211    112 23344 8999999999987653

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=2.7e-20  Score=188.26  Aligned_cols=281  Identities=20%  Similarity=0.235  Sum_probs=210.0

Q ss_pred             EeeCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          347 FINTHNGLNCASISQDG--SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg--~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      ..-+.+.|+|++|+|..  +++|+|..-|.|-+||+....                        .....+..+..|+++|
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~------------------------~d~d~v~~f~~hs~~V  237 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE------------------------KDKDGVYLFTPHSGPV  237 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC------------------------CccCceEEeccCCccc
Confidence            45678899999999963  699999999999999996311                        1133556788999999


Q ss_pred             EEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeec--CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eEE
Q 005277          425 YSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRI  500 (704)
Q Consensus       425 ~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~-~~~  500 (704)
                      .++.|+|.+ ..++++|.||+|++-|++....-..+..  ....+.++.|+.+...++.+..=|...+||+++... ...
T Consensus       238 s~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~  317 (498)
T KOG4328|consen  238 SGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN  317 (498)
T ss_pred             cceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh
Confidence            999999966 4788999999999999987654333333  455677889998888888888778999999998654 555


Q ss_pred             eccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCc----EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277          501 MAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (704)
Q Consensus       501 ~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwd  575 (704)
                      +.-|...|.+|+++|- ..+|+|++.|++++|||+|.-.    ++-....|...|.+..|||.|-.|++.+.|..|+|||
T Consensus       318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence            6678889999999995 4678999999999999998532    2233447999999999999888899999999999999


Q ss_pred             CC----CCeeeeeecCCCc------eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277          576 LA----SGRCVTPLMGHTS------CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC  645 (704)
Q Consensus       576 l~----~~~~~~~~~~h~~------~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg  645 (704)
                      ..    .-.+...+. |..      ......|                                  .|+..++++|-.-.
T Consensus       398 ss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W----------------------------------~P~~~li~vg~~~r  442 (498)
T KOG4328|consen  398 SSCISAKDEPLGTIP-HNNRTGRWLTPFKAAW----------------------------------DPDYNLIVVGRYPR  442 (498)
T ss_pred             cccccccCCccceee-ccCcccccccchhhee----------------------------------CCCccEEEEeccCc
Confidence            73    222222222 321      1223345                                  89999999999999


Q ss_pred             cEEEEeCCCCccccccccccCccccccccccCCCCcCeE-EEEEccCCcEEEEeec
Q 005277          646 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY-SLQFSRRNLLFAAGAL  700 (704)
Q Consensus       646 ~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~-~l~fs~~g~~La~gs~  700 (704)
                      .|-|+|-..++.+....              ......|. -..|+|.+..+++|+.
T Consensus       443 ~IDv~~~~~~q~v~el~--------------~P~~~tI~~vn~~HP~~~~~~aG~~  484 (498)
T KOG4328|consen  443 PIDVFDGNGGQMVCELH--------------DPESSTIPSVNEFHPMRDTLAAGGN  484 (498)
T ss_pred             ceeEEcCCCCEEeeecc--------------CccccccccceeecccccceeccCC
Confidence            99999988776433211              11112233 2478998886666654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=9.7e-21  Score=191.60  Aligned_cols=237  Identities=20%  Similarity=0.391  Sum_probs=197.6

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEeecCCcCeeEEEEcCCCC-EEEEEeCCCeEEEEECCCCce
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQP  497 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~v~~sp~~~-~l~sgs~dg~i~lwd~~~~~~  497 (704)
                      .++|+++.|+|....|++|+.||+++||.++..  ..+..+.-...||.+..|.|+|. .+++++.....+.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            478999999999999999999999999988743  34666666788999999999999 899999999999999987654


Q ss_pred             eE--EeccCC-CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277          498 LR--IMAGHL-SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (704)
Q Consensus       498 ~~--~~~~~~-~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw  574 (704)
                      ..  ...++. ..+.....+|++++|+..+..|.|.+....++..+..++ -.+.|..++|+.||+.|++.+.+|.|.+|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~  371 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW  371 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence            33  233333 357778889999999999999999999999999988885 56789999999999999999999999999


Q ss_pred             eCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          575 DLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       575 dl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                      |++...++..+... +.|....+                                |+|.+|.+||+|+..|.|.|||..+
T Consensus       372 nl~~~~~~~rf~D~-G~v~gts~--------------------------------~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  372 NLRQNSCLHRFVDD-GSVHGTSL--------------------------------CISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             ecCCcceEEEEeec-Cccceeee--------------------------------eecCCCceEEeccCcceEEEeccch
Confidence            99999888887633 33333332                                3389999999999999999999776


Q ss_pred             CccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277          655 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~  700 (704)
                      ...         ...++++.++....+.|++++|++|.++||.+|.
T Consensus       419 ~~~---------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~  455 (514)
T KOG2055|consen  419 CFA---------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASR  455 (514)
T ss_pred             hhc---------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence            432         1223567788888899999999999999998875

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=3.6e-20  Score=195.74  Aligned_cols=311  Identities=22%  Similarity=0.325  Sum_probs=228.7

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCC----------CCCcccc-c--CCCCC---
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND----------TTPREDI-I--GPNGR---  410 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~----------~~~~~~~-~--~~~~~---  410 (704)
                      +.+|.+-|.++.|+|.+..|++++.|.++.||.-......-......+...          ..+.... +  +..+.   
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl  342 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL  342 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence            349999999999999999999999999999998665311111000000000          0011100 0  01111   


Q ss_pred             --------ccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeecCCcCeeEEEEcCCCCEE
Q 005277          411 --------KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHYF  478 (704)
Q Consensus       411 --------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~v~~sp~~~~l  478 (704)
                              ........||.+.|.+++|+|.|.+|++.|.|-|-|++-.-..    ..+..-+-|...++|++|-+....|
T Consensus       343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F  422 (764)
T KOG1063|consen  343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF  422 (764)
T ss_pred             EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence                    1122335689999999999999999999999999999865511    2233334588899999999877889


Q ss_pred             EEEeCCCeEEEEECC-------------------------------------------CCc-------------------
Q 005277          479 ASSSHDRTARIWSMD-------------------------------------------RIQ-------------------  496 (704)
Q Consensus       479 ~sgs~dg~i~lwd~~-------------------------------------------~~~-------------------  496 (704)
                      ++|.....+|+|+..                                           ++.                   
T Consensus       423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e  502 (764)
T KOG1063|consen  423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE  502 (764)
T ss_pred             eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence            999999999999753                                           000                   


Q ss_pred             --------------eeEEeccCCCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCcEEEEeecCCCCEEEEEEec
Q 005277          497 --------------PLRIMAGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRSMILSLAMSP  557 (704)
Q Consensus       497 --------------~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp  557 (704)
                                    .+..+.||...|.|++.+|+++++|+++..     ..|++|+..+-..+..+.+|.-.|+.++|||
T Consensus       503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp  582 (764)
T KOG1063|consen  503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP  582 (764)
T ss_pred             CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence                          012245888999999999999999998743     4599999998888888999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCe----eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277          558 DGRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC  633 (704)
Q Consensus       558 dg~~l~sg~~dg~I~iwdl~~~~----~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  633 (704)
                      ||++|++.+.|.++.+|......    .....+.|+.-|++.+|                                  +|
T Consensus       583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW----------------------------------~p  628 (764)
T KOG1063|consen  583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSW----------------------------------SP  628 (764)
T ss_pred             CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEccc----------------------------------Cc
Confidence            99999999999999999875432    23346789999999999                                  99


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccC-----CcEEEEeecCC
Q 005277          634 EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR-----NLLFAAGALSK  702 (704)
Q Consensus       634 ~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~-----g~~La~gs~dg  702 (704)
                      ++.+++|+|.|.+|+||........          .+..+ ....+..+|++++|.|-     +.++++|-..|
T Consensus       629 de~~FaTaSRDK~VkVW~~~~~~d~----------~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~G  691 (764)
T KOG1063|consen  629 DEKYFATASRDKKVKVWEEPDLRDK----------YISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKG  691 (764)
T ss_pred             ccceeEEecCCceEEEEeccCchhh----------hhhhh-chhccCCceeeEEeeccccccccceEEEEeccc
Confidence            9999999999999999999876210          00111 33456788999999762     23667665544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.7e-21  Score=217.00  Aligned_cols=234  Identities=23%  Similarity=0.396  Sum_probs=192.0

Q ss_pred             ccCeEEEEEcCCCCE----EEEEeCCCeEEEEeCCCC------ceeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEE
Q 005277          421 SGPVYSASFSPLGDF----ILSSSADTTIRLWSTKLN------ANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARI  489 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~----l~s~s~Dg~I~lwd~~~~------~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~l  489 (704)
                      ....+.++|.+.+..    |+.|..||.|.+||...-      ..+.++..|+++|..+.|++. ++.+|+|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            356789999988765    888999999999998752      235667789999999999995 559999999999999


Q ss_pred             EECCCCceeEEec--cCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC--CEEEEEEecCCC-EEE
Q 005277          490 WSMDRIQPLRIMA--GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS--MILSLAMSPDGR-YMA  563 (704)
Q Consensus       490 wd~~~~~~~~~~~--~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~--~i~~l~~spdg~-~l~  563 (704)
                      ||+.+.+.-....  ...+.|.|++|+. ...+|++++.+|.+.|||++..+.+-.+..+.+  .+..++|+|++. .|+
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~  223 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL  223 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence            9998855443331  2457899999986 467888999999999999999888877765554  578899999863 455


Q ss_pred             EEeCC---CeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC-CCCEE
Q 005277          564 SGDED---GTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC-EGSLL  638 (704)
Q Consensus       564 sg~~d---g~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l  638 (704)
                      +++.|   -.|.+||+|.- .+++.+.+|...|.+++|                                  ++ |..++
T Consensus       224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsW----------------------------------c~~D~~ll  269 (1049)
T KOG0307|consen  224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSW----------------------------------CPQDPRLL  269 (1049)
T ss_pred             eecCCCCCceeEeecccccCCchhhhcccccceeeecc----------------------------------CCCCchhh
Confidence            55544   37999999864 577888999999999999                                  55 45899


Q ss_pred             EEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCc-EEEEeecCCC
Q 005277          639 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGALSKT  703 (704)
Q Consensus       639 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~-~La~gs~dgt  703 (704)
                      ++++.|+.|.+|+.++++.               +..+++....++.+.|+|.+. ++++++.||.
T Consensus       270 lSsgkD~~ii~wN~~tgEv---------------l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk  320 (1049)
T KOG0307|consen  270 LSSGKDNRIICWNPNTGEV---------------LGELPAQGNWCFDVQWCPRNPSVMAAASFDGK  320 (1049)
T ss_pred             hcccCCCCeeEecCCCceE---------------eeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence            9999999999999999754               677888889999999999987 8888888874

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.8e-21  Score=215.24  Aligned_cols=254  Identities=22%  Similarity=0.430  Sum_probs=206.9

Q ss_pred             eeCCCCEEEEEEcCCCCE----EEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          348 INTHNGLNCASISQDGSL----VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~----lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      +.....-+.++|++.|..    ||.|..||.|.+||.....                      .+.....+.....|+++
T Consensus        61 ~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~----------------------~~~~~~~la~~~~h~G~  118 (1049)
T KOG0307|consen   61 LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII----------------------ANASEEVLATKSKHTGP  118 (1049)
T ss_pred             ccccccceeeeecccCCCccceeeccccCCceEEecchhhc----------------------cCcchHHHhhhcccCCc
Confidence            344556788999987765    9999999999999976520                      11223455667789999


Q ss_pred             eEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEee--cCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeE
Q 005277          424 VYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       424 V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      |.++.|++... +|++|+.||.|.|||+...+.-..+.  .....|.+++|+. ..+.|++++.+|.+.|||++..+++-
T Consensus       119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii  198 (1049)
T KOG0307|consen  119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII  198 (1049)
T ss_pred             eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence            99999999776 89999999999999998754443332  2456799999998 45678999999999999999998888


Q ss_pred             EeccCCC--CeeEEEEcCCC-CEEEEEECC---CcEEEEeCCC-CcEEEEeecCCCCEEEEEEecCC-CEEEEEeCCCeE
Q 005277          500 IMAGHLS--DVDCVRWHINC-NYIATGSSD---KTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTI  571 (704)
Q Consensus       500 ~~~~~~~--~V~~v~~~p~~-~~l~tgs~d---g~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg-~~l~sg~~dg~I  571 (704)
                      .+..+..  .+..+.|||+. ..|++++.|   -.|.+||+|. ..+++++.+|...|.++.|++.+ ++|++++.|+.|
T Consensus       199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i  278 (1049)
T KOG0307|consen  199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI  278 (1049)
T ss_pred             ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence            7776554  46789999975 556666654   3599999984 56778889999999999999966 899999999999


Q ss_pred             EEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC-CCEEEEEeCCCcEEEE
Q 005277          572 MMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE-GSLLASGSADCTVKLW  650 (704)
Q Consensus       572 ~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~lasgs~Dg~V~iW  650 (704)
                      .+|+..+++.+..+......+..+.|                                  +|. ...+++++-||.|.|+
T Consensus       279 i~wN~~tgEvl~~~p~~~nW~fdv~w----------------------------------~pr~P~~~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  279 ICWNPNTGEVLGELPAQGNWCFDVQW----------------------------------CPRNPSVMAAASFDGKISIY  324 (1049)
T ss_pred             eEecCCCceEeeecCCCCcceeeeee----------------------------------cCCCcchhhhheeccceeee
Confidence            99999999999999988888999999                                  554 4588999999999999


Q ss_pred             eCCCCcc
Q 005277          651 DVTTSTK  657 (704)
Q Consensus       651 d~~~~~~  657 (704)
                      .+.....
T Consensus       325 sl~~~~~  331 (1049)
T KOG0307|consen  325 SLQGTDT  331 (1049)
T ss_pred             eeecCCc
Confidence            9987653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.86  E-value=3.2e-20  Score=194.41  Aligned_cols=255  Identities=22%  Similarity=0.329  Sum_probs=191.3

Q ss_pred             EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      ++.+.-|.+.|..+.|-|....|++++.|.++++||+.....                          .....+.||.+.
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l--------------------------~G~~~~~GH~~S  146 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL--------------------------VGGRLNLGHTGS  146 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee--------------------------ecceeecccccc
Confidence            556778999999999999888999999999999999986321                          122357899999


Q ss_pred             eEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce---------------------------eEEeecCCcCeeE---EEEc
Q 005277          424 VYSASFSPLGD-FILSSSADTTIRLWSTKLNAN---------------------------LVCYKGHNYPVWD---VQFN  472 (704)
Q Consensus       424 V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~---------------------------~~~~~~h~~~V~~---v~~s  472 (704)
                      |.+++|.|.+. .+++|+.||.|.|||++-...                           +..-+.+...|.+   +.+.
T Consensus       147 vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f  226 (720)
T KOG0321|consen  147 VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF  226 (720)
T ss_pred             cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE
Confidence            99999999876 567999999999999873320                           1111223444555   5566


Q ss_pred             CCCCEEEEEeC-CCeEEEEECCCCcee------EEec--cC---CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--c
Q 005277          473 PQGHYFASSSH-DRTARIWSMDRIQPL------RIMA--GH---LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--E  538 (704)
Q Consensus       473 p~~~~l~sgs~-dg~i~lwd~~~~~~~------~~~~--~~---~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~--~  538 (704)
                      .|...||+++. |+.|+|||+++....      ....  -|   .-.+.++.....|.+|++.+.|++|++|++.+-  .
T Consensus       227 kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s  306 (720)
T KOG0321|consen  227 KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS  306 (720)
T ss_pred             eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence            68889999987 999999999864422      2211  22   234677777788999999999999999999854  3


Q ss_pred             EEEEeecCCCC--EEEEEEecCCCEEEEEeCCCeEEEEeCCCCe-eeeeecCCCceeeeeeeeeeehccccccccccccc
Q 005277          539 CVRIFIGHRSM--ILSLAMSPDGRYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVS  615 (704)
Q Consensus       539 ~~~~~~~h~~~--i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~-~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~  615 (704)
                      ++..+.++...  -..-..+||+.+|++|+.|....+|.+.+.. ....+.+|.-.|+++.|..                
T Consensus       307 P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p----------------  370 (720)
T KOG0321|consen  307 PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP----------------  370 (720)
T ss_pred             chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc----------------
Confidence            34444444321  2233568999999999999999999998764 4566789999999999932                


Q ss_pred             cceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          616 TGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       616 ~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                                      ++... +++++.|..++||++..+-.
T Consensus       371 ----------------S~~t~-v~TcSdD~~~kiW~l~~~l~  395 (720)
T KOG0321|consen  371 ----------------SATTP-VATCSDDFRVKIWRLSNGLE  395 (720)
T ss_pred             ----------------ccCCC-ceeeccCcceEEEeccCchh
Confidence                            55554 55559999999999976543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.85  E-value=1.3e-19  Score=188.94  Aligned_cols=149  Identities=22%  Similarity=0.383  Sum_probs=121.9

Q ss_pred             eeEEEEcC-CCCEEEEEECCCcEEEEeCCCC-------cEEEEeecCCCCEEEEEEec-CCCEEEEEeCCCeEEEEeCCC
Q 005277          508 VDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-------ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       508 V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~-------~~~~~~~~h~~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~  578 (704)
                      |+.+.|.| |...|++++.||.|++|.+..+       .+-..+++|...|+++.|+| -...|++++.|-+|++||+++
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            44455665 4567999999999999998754       34456789999999999999 457899999999999999999


Q ss_pred             CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277          579 GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~  658 (704)
                      ++....+.+|++.|.+++|                                  ||+|+.+|+.+.||+|+||+-.++...
T Consensus       710 ~~~~~~l~gHtdqIf~~AW----------------------------------SpdGr~~AtVcKDg~~rVy~Prs~e~p  755 (1012)
T KOG1445|consen  710 AKLYSRLVGHTDQIFGIAW----------------------------------SPDGRRIATVCKDGTLRVYEPRSREQP  755 (1012)
T ss_pred             hhhhheeccCcCceeEEEE----------------------------------CCCCcceeeeecCceEEEeCCCCCCCc
Confidence            9999999999999999999                                  999999999999999999998876542


Q ss_pred             cccccccCccccccccccC-CCCcCeEEEEEccCCcEEEEeecCCCC
Q 005277          659 LKTEEKSGTNRLRSLKTLP-TKSTPVYSLQFSRRNLLFAAGALSKTS  704 (704)
Q Consensus       659 ~~~~~~~~~~~~~~l~~~~-~~~~~V~~l~fs~~g~~La~gs~dgt~  704 (704)
                                    +..-+ ...+.--.+.|--+|.++++.++|+.|
T Consensus       756 --------------v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S  788 (1012)
T KOG1445|consen  756 --------------VYEGKGPVGTRGARILWACDGRIVIVVGFDKSS  788 (1012)
T ss_pred             --------------cccCCCCccCcceeEEEEecCcEEEEecccccc
Confidence                          11111 112334567899999999999998764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=1.6e-19  Score=175.70  Aligned_cols=285  Identities=18%  Similarity=0.299  Sum_probs=213.2

Q ss_pred             eeCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec--cCC
Q 005277          348 INTHNGLNCASISQ-----DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY--QGH  420 (704)
Q Consensus       348 ~~~~~~V~~~~fs~-----dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h  420 (704)
                      .+|...|..++|++     ....+|+.+ ...+.+|.......                         .+..+..  ..|
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~-------------------------ir~lq~y~D~d~   88 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGG-------------------------IRLLQSYADEDH   88 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccc-------------------------eeeeeeccCCCC
Confidence            45667888899884     244555554 45688888765221                         0111111  136


Q ss_pred             ccCeEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 005277          421 SGPVYSASFSPL----GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI  495 (704)
Q Consensus       421 ~~~V~~l~~sp~----~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~  495 (704)
                      ....+.++|+-+    +.+++.|+.-|.|+|.|+.++++...+.+|...|..+.+.|+ .+++++||.|.+|++|++++.
T Consensus        89 ~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~  168 (385)
T KOG1034|consen   89 DESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD  168 (385)
T ss_pred             CcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence            677888888654    458899999999999999999999999999999999999995 578999999999999999999


Q ss_pred             ceeEEec---cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE------E-------------------E---Eee
Q 005277          496 QPLRIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC------V-------------------R---IFI  544 (704)
Q Consensus       496 ~~~~~~~---~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~------~-------------------~---~~~  544 (704)
                      .++..+.   +|.+.|.++.|+++|.+|++++.|.++.+|++...+.      .                   .   +-.
T Consensus       169 ~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d  248 (385)
T KOG1034|consen  169 VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD  248 (385)
T ss_pred             eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence            9998875   6999999999999999999999999999999973210      0                   0   112


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC-CCee-------------eeeecCCCceeeeeeeeeeehcccccccc
Q 005277          545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRC-------------VTPLMGHTSCVWTLAYRFLLLVTNAYLKI  610 (704)
Q Consensus       545 ~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~-~~~~-------------~~~~~~h~~~V~sl~~~~~~~~~~~~~~~  610 (704)
                      -|...|-|+.|-  |.++++=+.++.|..|... -++.             +..+.-....+|-+.|.+           
T Consensus       249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~-----------  315 (385)
T KOG1034|consen  249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF-----------  315 (385)
T ss_pred             cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee-----------
Confidence            467777778774  7899999999999999872 2222             222223334455555522           


Q ss_pred             ccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc
Q 005277          611 SDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR  690 (704)
Q Consensus       611 ~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~  690 (704)
                                           .+-+++||.|...|.|.+||+........           ...+.......|...+||.
T Consensus       316 ---------------------d~~~~~la~gnq~g~v~vwdL~~~ep~~~-----------ttl~~s~~~~tVRQ~sfS~  363 (385)
T KOG1034|consen  316 ---------------------DPWQKMLALGNQSGKVYVWDLDNNEPPKC-----------TTLTHSKSGSTVRQTSFSR  363 (385)
T ss_pred             ---------------------cHHHHHHhhccCCCcEEEEECCCCCCccC-----------ceEEeccccceeeeeeecc
Confidence                                 67789999999999999999998764310           0112223456799999999


Q ss_pred             CCcEEEEeecCCC
Q 005277          691 RNLLFAAGALSKT  703 (704)
Q Consensus       691 ~g~~La~gs~dgt  703 (704)
                      ||.+|+....|++
T Consensus       364 dgs~lv~vcdd~~  376 (385)
T KOG1034|consen  364 DGSILVLVCDDGT  376 (385)
T ss_pred             cCcEEEEEeCCCc
Confidence            9999999999886

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.5e-19  Score=174.89  Aligned_cols=236  Identities=16%  Similarity=0.265  Sum_probs=180.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~  503 (704)
                      ..|+.|++.|.+|++|+.||.|.|||+.+......+.+|..||++++||++|+.++|+|.|..|.+||+..+.++..+. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            7899999999999999999999999999999889999999999999999999999999999999999999999988877 


Q ss_pred             CCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEEEEeecC----CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          504 HLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGH----RSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       504 ~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h----~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                      ..++|..+.|||.. +..++.-.+..-.+-++..++....-...    +....+..|.+.|+++++|...|.+.++|..+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence            67899999999953 34444434555556666543221111111    11223446889999999999999999999999


Q ss_pred             CeeeeeecCCC-ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          579 GRCVTPLMGHT-SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       579 ~~~~~~~~~h~-~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      .+++..++--. ..|.++.+                                  +..|++|+.-+.|..||.|++..--.
T Consensus       185 ~e~vas~rits~~~IK~I~~----------------------------------s~~g~~liiNtsDRvIR~ye~~di~~  230 (405)
T KOG1273|consen  185 LECVASFRITSVQAIKQIIV----------------------------------SRKGRFLIINTSDRVIRTYEISDIDD  230 (405)
T ss_pred             heeeeeeeechheeeeEEEE----------------------------------eccCcEEEEecCCceEEEEehhhhcc
Confidence            99998887555 67777777                                  88999999999999999999873211


Q ss_pred             ccccccccCccccccccccC--CCCcCeEEEEEccCCcEEEEeec
Q 005277          658 VLKTEEKSGTNRLRSLKTLP--TKSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       658 ~~~~~~~~~~~~~~~l~~~~--~~~~~V~~l~fs~~g~~La~gs~  700 (704)
                      ...    .  ....+...+.  -...+-.++.||.+|.++++|+.
T Consensus       231 ~~r----~--~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~  269 (405)
T KOG1273|consen  231 EGR----D--GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA  269 (405)
T ss_pred             cCc----c--CCcChhHHHHHHHhhhhhhheeecCCccEEEeccc
Confidence            100    0  0001111111  12334567899999999999874

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=8.1e-18  Score=181.98  Aligned_cols=281  Identities=36%  Similarity=0.633  Sum_probs=224.6

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc-cCe
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPV  424 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V  424 (704)
                      ....|...+.++.|.+.+..++.++.|+.+.+|+.....                           .....+.++. ..+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~  112 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---------------------------KLIKSLEGLHDSSV  112 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc---------------------------eeEEEEeccCCCce
Confidence            356788999999999999999999999999999987521                           1223333322 367


Q ss_pred             EEEEE-cCCCC-EEEEEeC-CCeEEEEeCCC-CceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeE
Q 005277          425 YSASF-SPLGD-FILSSSA-DTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLR  499 (704)
Q Consensus       425 ~~l~~-sp~~~-~l~s~s~-Dg~I~lwd~~~-~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg~i~lwd~~~~~~~~  499 (704)
                      ..+.+ ++++. .++..+. |+.+.+|+... ......+..|...|.+++|+|++.++++++. |+.+++|+......+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (466)
T COG2319         113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS  192 (466)
T ss_pred             eeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence            77777 78787 5555444 99999999998 7888889999999999999999999888886 9999999999988999


Q ss_pred             EeccCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCcEEE-EeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277          500 IMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~-~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~  577 (704)
                      .+.+|...|.+++|+|++. ++++++.|+.|++||...+..+. .+.+|.... ...|+|++.++++++.|+.+++||+.
T Consensus       193 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~  271 (466)
T COG2319         193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR  271 (466)
T ss_pred             eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence            9999999999999999998 55555899999999999888888 688888875 44899999999999999999999998


Q ss_pred             CCee-eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          578 SGRC-VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       578 ~~~~-~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                      .... +..+.+|...+.++.|                                  +|++..+++++.|+.+.+|+.....
T Consensus       272 ~~~~~~~~~~~~~~~v~~~~~----------------------------------~~~~~~~~~~~~d~~~~~~~~~~~~  317 (466)
T COG2319         272 SSSSLLRTLSGHSSSVLSVAF----------------------------------SPDGKLLASGSSDGTVRLWDLETGK  317 (466)
T ss_pred             CCCcEEEEEecCCccEEEEEE----------------------------------CCCCCEEEEeeCCCcEEEEEcCCCc
Confidence            7664 4444678888999888                                  8888888889999999999887765


Q ss_pred             cccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEe-ecC
Q 005277          657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG-ALS  701 (704)
Q Consensus       657 ~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~g-s~d  701 (704)
                      .....            . ...|...|..+.|.+++..++.+ ..|
T Consensus       318 ~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~d  350 (466)
T COG2319         318 LLSSL------------T-LKGHEGPVSSLSFSPDGSLLVSGGSDD  350 (466)
T ss_pred             eEEEe------------e-ecccCCceEEEEECCCCCEEEEeecCC
Confidence            43111            1 23455578888884332445544 444

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.1e-18  Score=184.64  Aligned_cols=234  Identities=18%  Similarity=0.324  Sum_probs=195.0

Q ss_pred             CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEeecC-CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 005277          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-LVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~-~~~~~~h-~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~  496 (704)
                      --..+|.+++|+.+.+.||.+-.||.|.+|++..+-. ...+.++ ...|-+++|++.+ .|++.+.+|.|.-||+-+.+
T Consensus        23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk  101 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLK  101 (691)
T ss_pred             eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCc
Confidence            3457899999999999999999999999999987544 3344444 5679999999544 57778889999999999999


Q ss_pred             eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE--EeecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR--IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (704)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~--~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw  574 (704)
                      +...+....+.|++++.+|.+..+++|+.||.+..++...++...  .+...++.|.++.|+|++..|++|+.||.|++|
T Consensus       102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw  181 (691)
T KOG2048|consen  102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW  181 (691)
T ss_pred             eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence            999999999999999999999999999999988888887776543  344556899999999999999999999999999


Q ss_pred             eCCCCeeeeeec--------CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277          575 DLASGRCVTPLM--------GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT  646 (704)
Q Consensus       575 dl~~~~~~~~~~--------~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~  646 (704)
                      |..++..+....        +....||++.+                                  - ....|++|..-|+
T Consensus       182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~----------------------------------L-rd~tI~sgDS~G~  226 (691)
T KOG2048|consen  182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLF----------------------------------L-RDSTIASGDSAGT  226 (691)
T ss_pred             EcCCCceEEEeeecccccccCCceEEEEEEE----------------------------------e-ecCcEEEecCCce
Confidence            999987766221        12235566555                                  2 3358999999999


Q ss_pred             EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       647 V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      |.+||...++               ++..+..|...|.+++.++++..+.+++.|+.
T Consensus       227 V~FWd~~~gT---------------LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~  268 (691)
T KOG2048|consen  227 VTFWDSIFGT---------------LIQSHSCHDADVLALAVADNEDRVFSAGVDPK  268 (691)
T ss_pred             EEEEcccCcc---------------hhhhhhhhhcceeEEEEcCCCCeEEEccCCCc
Confidence            9999998875               46677788999999999999999999998874

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=6.5e-20  Score=186.60  Aligned_cols=233  Identities=16%  Similarity=0.297  Sum_probs=193.8

Q ss_pred             CCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec
Q 005277          338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (704)
Q Consensus       338 ~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (704)
                      .+|.++.....+.. .-.|++......++++|+..++|+|||+..                            +...+.+
T Consensus        67 ~~~~Vp~~~k~~gd-~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~----------------------------kl~hr~l  117 (673)
T KOG4378|consen   67 KTPEVPRVRKLTGD-NAFCVACASQSLYEISGGQSGCVKIWDLRA----------------------------KLIHRFL  117 (673)
T ss_pred             CCCccceeeccccc-hHHHHhhhhcceeeeccCcCceeeehhhHH----------------------------HHHhhhc
Confidence            45555554443333 444555545558999999999999999974                            4566778


Q ss_pred             cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC-CcCeeEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 005277          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRI  495 (704)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~v~~sp~~~-~l~sgs~dg~i~lwd~~~~  495 (704)
                      .+|...|+++.++-...||++++..|.|.|..+.++.....+... ...|.-+.|+|..+ ++.+++.+|.|.+||+...
T Consensus       118 kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~  197 (673)
T KOG4378|consen  118 KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM  197 (673)
T ss_pred             cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC
Confidence            999999999999999999999999999999999999888888754 44566899999654 5778899999999999988


Q ss_pred             ceeEEe-ccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 005277          496 QPLRIM-AGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM  573 (704)
Q Consensus       496 ~~~~~~-~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~i  573 (704)
                      .++..+ ..|..+...|+|+|. ..+|++.+.|..|.+||++..+....+. ...+.+.++|+++|.+|++|...|.|..
T Consensus       198 sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~  276 (673)
T KOG4378|consen  198 SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIA  276 (673)
T ss_pred             CcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEE
Confidence            887665 469999999999994 5677889999999999999877766553 4568999999999999999999999999


Q ss_pred             EeCCC-CeeeeeecCCCceeeeeeeeee
Q 005277          574 WDLAS-GRCVTPLMGHTSCVWTLAYRFL  600 (704)
Q Consensus       574 wdl~~-~~~~~~~~~h~~~V~sl~~~~~  600 (704)
                      ||++. ..++..+..|...|++++|.+.
T Consensus       277 YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  277 YDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             EecccCCCCceEeeecccceeEEEeeec
Confidence            99986 4678999999999999999665

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=8.9e-20  Score=184.11  Aligned_cols=192  Identities=23%  Similarity=0.385  Sum_probs=158.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcee---------------------EEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEE
Q 005277          433 GDFILSSSADTTIRLWSTKLNANL---------------------VCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIW  490 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~---------------------~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lw  490 (704)
                      |++++.|+.|..|.|||+.-...+                     ....+|+..|.+++|+.. .+.||+||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            579999999999999998732111                     112368888989999874 5679999999999999


Q ss_pred             ECCCCceeEEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC-CEEEEEeCC
Q 005277          491 SMDRIQPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDED  568 (704)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~l~sg~~d  568 (704)
                      |++++++..++..|...|.++.|||. ..+|++|+.|++|.+.|+|........-...+.|-.++|.|.. ..++++..|
T Consensus       272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd  351 (463)
T KOG0270|consen  272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD  351 (463)
T ss_pred             EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCC
Confidence            99999999999999999999999985 6889999999999999999532222222345789999999965 467778899


Q ss_pred             CeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcE
Q 005277          569 GTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV  647 (704)
Q Consensus       569 g~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V  647 (704)
                      |+|+-+|+|.. +++.++.+|.++|.+++++                                 .....+++|++.|+.|
T Consensus       352 G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n---------------------------------~~~p~~l~t~s~d~~V  398 (463)
T KOG0270|consen  352 GTVYYFDIRNPGKPVWTLKAHDDEISGLSVN---------------------------------IQTPGLLSTASTDKVV  398 (463)
T ss_pred             ceEEeeecCCCCCceeEEEeccCCcceEEec---------------------------------CCCCcceeeccccceE
Confidence            99999999975 8999999999999999983                                 3345689999999999


Q ss_pred             EEEeCCCCcc
Q 005277          648 KLWDVTTSTK  657 (704)
Q Consensus       648 ~iWd~~~~~~  657 (704)
                      ++|++.....
T Consensus       399 klw~~~~~~~  408 (463)
T KOG0270|consen  399 KLWKFDVDSP  408 (463)
T ss_pred             EEEeecCCCC
Confidence            9999987543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=2e-19  Score=187.12  Aligned_cols=241  Identities=24%  Similarity=0.393  Sum_probs=198.5

Q ss_pred             cceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCE--EEEEeCCCeEEE
Q 005277          412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY--FASSSHDRTARI  489 (704)
Q Consensus       412 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~--l~sgs~dg~i~l  489 (704)
                      .+...+.||++.|.+|+..|.|.+|++|+.||+|+||.+.++.|+.++. ..+.|.||+|+|.+..  +|++-. +.+.|
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~i  468 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLI  468 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEE
Confidence            4556789999999999999999999999999999999999999999887 4568999999996543  444433 22333


Q ss_pred             EEC---------------------------------CC----CceeEEeccCCCCeeEEEEcCCCCEEEEEEC---CCcE
Q 005277          490 WSM---------------------------------DR----IQPLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTV  529 (704)
Q Consensus       490 wd~---------------------------------~~----~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~I  529 (704)
                      -+.                                 ..    ..-++..-.|...|..+.||..|.||++...   ...|
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence            332                                 10    0012344457888999999999999999765   3569


Q ss_pred             EEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccc
Q 005277          530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLK  609 (704)
Q Consensus       530 ~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~  609 (704)
                      .|+++...+...-|....+.|.++.|+|...+|++++. ..|+|||+..+..++.+......|.+++.            
T Consensus       549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msi------------  615 (733)
T KOG0650|consen  549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSI------------  615 (733)
T ss_pred             EEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeee------------
Confidence            99999877776667677788999999999999888875 47999999998888888877778888887            


Q ss_pred             cccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEc
Q 005277          610 ISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS  689 (704)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs  689 (704)
                                            +|.|.-|+.|+.|+.+..+|+.-..+              ...++..|...|++|+|+
T Consensus       616 ----------------------hp~GDnli~gs~d~k~~WfDldlssk--------------Pyk~lr~H~~avr~Va~H  659 (733)
T KOG0650|consen  616 ----------------------HPNGDNLILGSYDKKMCWFDLDLSSK--------------PYKTLRLHEKAVRSVAFH  659 (733)
T ss_pred             ----------------------cCCCCeEEEecCCCeeEEEEcccCcc--------------hhHHhhhhhhhhhhhhhc
Confidence                                  99999999999999999999987654              366788899999999999


Q ss_pred             cCCcEEEEeecCCC
Q 005277          690 RRNLLFAAGALSKT  703 (704)
Q Consensus       690 ~~g~~La~gs~dgt  703 (704)
                      +.-.++|+|+.||+
T Consensus       660 ~ryPLfas~sdDgt  673 (733)
T KOG0650|consen  660 KRYPLFASGSDDGT  673 (733)
T ss_pred             cccceeeeecCCCc
Confidence            99999999999986

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=5.3e-20  Score=190.85  Aligned_cols=259  Identities=21%  Similarity=0.317  Sum_probs=200.8

Q ss_pred             EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      +++..|.+.|+.++|.|-...|++|+.||.+.+|++.....                    ........+..+.+|.++|
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~--------------------s~~~~~epi~tfraH~gPV  347 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK--------------------SAEKDVEPILTFRAHEGPV  347 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC--------------------ccccceeeeEEEecccCce
Confidence            37889999999999999999999999999999999943110                    0112345678899999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCC----------ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWSTKLN----------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~----------~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~  494 (704)
                      .|++..+++..+++|+.||+|+.|++...          .....+.||+..||.+++++....+++|+.||++++|+...
T Consensus       348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~  427 (577)
T KOG0642|consen  348 LCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE  427 (577)
T ss_pred             EEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCC
Confidence            99999999999999999999999966421          22456789999999999999999999999999999999887


Q ss_pred             CceeEEeccCC--CCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEEEEeecC-------CCCEEEEEEecCCCEEEE
Q 005277          495 IQPLRIMAGHL--SDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGH-------RSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       495 ~~~~~~~~~~~--~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-------~~~i~~l~~spdg~~l~s  564 (704)
                      ..+ ..|....  +.-..+.+-... .+.++...-+.--++++..+..+..+...       ...+.-+.++|.+.+.++
T Consensus       428 ~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~  506 (577)
T KOG0642|consen  428 ESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT  506 (577)
T ss_pred             cCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe
Confidence            766 3333211  222344443222 22222223333334455555555444321       235778899999999999


Q ss_pred             EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD  644 (704)
Q Consensus       565 g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D  644 (704)
                      +..|+.|+++|..++.++.....|...++++++                                  .|+|-+|++|+.|
T Consensus       507 ~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai----------------------------------~~ng~~l~s~s~d  552 (577)
T KOG0642|consen  507 AHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAI----------------------------------DPNGPYLMSGSHD  552 (577)
T ss_pred             cccCCceecccccccccchheeeccceecceee----------------------------------cCCCceEEeecCC
Confidence            999999999999999999999999999999999                                  9999999999999


Q ss_pred             CcEEEEeCCCCccc
Q 005277          645 CTVKLWDVTTSTKV  658 (704)
Q Consensus       645 g~V~iWd~~~~~~~  658 (704)
                      |.|++|.+.....+
T Consensus       553 ~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  553 GSVRLWKLDVKTCV  566 (577)
T ss_pred             ceeehhhccchhee
Confidence            99999999776543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.1e-18  Score=172.75  Aligned_cols=305  Identities=15%  Similarity=0.188  Sum_probs=218.1

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCcccee-eccCCccCe
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT-LYQGHSGPV  424 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V  424 (704)
                      -+.+|.+.|+++.||.++++||+|+.|..+++|++...-...+                      .+.+. .-..|...|
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~----------------------~KPI~~~~~~H~SNI  108 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT----------------------PKPIGVMEHPHRSNI  108 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC----------------------CCCceeccCccccce
Confidence            4678999999999999999999999999999999875211111                      11222 223466899


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec--CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-ee--E
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-PL--R  499 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~-~~--~  499 (704)
                      .|++|...+++|++|..+++|.+.|+++.+.+..+..  ..+.|..+..+|..+.|++.+.+|.|.+||.+... ++  .
T Consensus       109 F~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~  188 (609)
T KOG4227|consen  109 FSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV  188 (609)
T ss_pred             EEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee
Confidence            9999999999999999999999999999988877753  23589999999999999999999999999997654 32  2


Q ss_pred             EeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcE-EEEe---ecC---CCCEEEEEEecCCCEEEEEeCCCeE
Q 005277          500 IMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGEC-VRIF---IGH---RSMILSLAMSPDGRYMASGDEDGTI  571 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~-~~~~---~~h---~~~i~~l~~spdg~~l~sg~~dg~I  571 (704)
                      ...........+.|+|. ..+|++.+..+-+.+||++.... +...   .+-   .....++.|+|+|..+.+--....-
T Consensus       189 ~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P  268 (609)
T KOG4227|consen  189 LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP  268 (609)
T ss_pred             eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC
Confidence            33445567888999995 56788899999999999985432 2111   111   2234678899999998887766677


Q ss_pred             EEEeCCCCeeeeeecCCC--ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          572 MMWDLASGRCVTPLMGHT--SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       572 ~iwdl~~~~~~~~~~~h~--~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                      .+||+.+.++..--..|.  +......                             +..+|+-.+ .-+++|+.+-.|++
T Consensus       269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T-----------------------------~KS~~F~~D-~~v~tGSD~~~i~~  318 (609)
T KOG4227|consen  269 LYFDFISQRCFVLKSDHNPNGYCNIKT-----------------------------IKSMTFIDD-YTVATGSDHWGIHI  318 (609)
T ss_pred             EEeeeecccceeEeccCCCCcceeeee-----------------------------eeeeeeecc-eeeeccCcccceEE
Confidence            788887755432222232  1111111                             111222333 34999999999999


Q ss_pred             EeCCCCccccccccc--------cCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          650 WDVTTSTKVLKTEEK--------SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       650 Wd~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      |.+........+...        +....-..+..+.+|.+-+..|.|+|.+.+|++++..+
T Consensus       319 WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~  379 (609)
T KOG4227|consen  319 WKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVEN  379 (609)
T ss_pred             EecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhh
Confidence            999765433221110        11111234667899999999999999999999887543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.82  E-value=2e-18  Score=165.31  Aligned_cols=254  Identities=22%  Similarity=0.370  Sum_probs=189.5

Q ss_pred             ceeeccCCccCeEEEEEcCCCCEEE-EEeCC-------CeEEEEeCCCCc---------eeEEee-cCCcCeeEEEEcCC
Q 005277          413 SYTLYQGHSGPVYSASFSPLGDFIL-SSSAD-------TTIRLWSTKLNA---------NLVCYK-GHNYPVWDVQFNPQ  474 (704)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~D-------g~I~lwd~~~~~---------~~~~~~-~h~~~V~~v~~sp~  474 (704)
                      ....+..|.+.|..++-+|-.+.++ ++..+       ..+.||.+....         ++..+. .+-+.|.|+.|.|+
T Consensus        55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn  134 (370)
T KOG1007|consen   55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN  134 (370)
T ss_pred             hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence            3455677889999999999766544 54332       247899876432         233333 35568999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCce-eEEec-----cCCCCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCcEEEEee-c
Q 005277          475 GHYFASSSHDRTARIWSMDRIQP-LRIMA-----GHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFI-G  545 (704)
Q Consensus       475 ~~~l~sgs~dg~i~lwd~~~~~~-~~~~~-----~~~~~V~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~  545 (704)
                      +..+++-. |..|.+|+++.... +..+.     ++....++-+|+|  +|+.+++. .|+++..||+|+.++...+. .
T Consensus       135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA  212 (370)
T KOG1007|consen  135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA  212 (370)
T ss_pred             CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence            99888876 88999999987665 22222     3456678889988  78888877 58999999999887765553 6


Q ss_pred             CCCCEEEEEEecCCC-EEEEEeCCCeEEEEeCCC-CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeee
Q 005277          546 HRSMILSLAMSPDGR-YMASGDEDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL  623 (704)
Q Consensus       546 h~~~i~~l~~spdg~-~l~sg~~dg~I~iwdl~~-~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (704)
                      |...|..+.|+|+-+ +|++|+.||.|+|||.++ ..++..+.+|...|+++.|                          
T Consensus       213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf--------------------------  266 (370)
T KOG1007|consen  213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF--------------------------  266 (370)
T ss_pred             hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe--------------------------
Confidence            888999999999865 678999999999999986 4678999999999999999                          


Q ss_pred             eEEeecccCC-CCCEEEEEeCCCcEEEEeCCCCccccccc--------------cccCccccccccccCCCCcCeEEEEE
Q 005277          624 TIIYFGCASC-EGSLLASGSADCTVKLWDVTTSTKVLKTE--------------EKSGTNRLRSLKTLPTKSTPVYSLQF  688 (704)
Q Consensus       624 ~~~~~~~~s~-~g~~lasgs~Dg~V~iWd~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~V~~l~f  688 (704)
                              +| ..++|.+||.|..|.+|...+-.....+.              ++...-....+.++..|...|++++|
T Consensus       267 --------n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aW  338 (370)
T KOG1007|consen  267 --------NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAW  338 (370)
T ss_pred             --------cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEee
Confidence                    44 35688999999999999876533111110              01111222456788899999999999


Q ss_pred             ccCC-cEEEEeecCC
Q 005277          689 SRRN-LLFAAGALSK  702 (704)
Q Consensus       689 s~~g-~~La~gs~dg  702 (704)
                      |... =++|+-++||
T Consensus       339 SsadPWiFASLSYDG  353 (370)
T KOG1007|consen  339 SSADPWIFASLSYDG  353 (370)
T ss_pred             ccCCCeeEEEeccCc
Confidence            8755 4678888887

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.82  E-value=1.8e-19  Score=175.40  Aligned_cols=241  Identities=27%  Similarity=0.467  Sum_probs=186.7

Q ss_pred             eCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          349 NTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       349 ~~~~~V~~~~fs~d----g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      .|......++|+-|    ..++|+|+.-|.|+|.|+.+                            ......+.+|.+.|
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~----------------------------~~~~~~~~ghG~sI  138 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS----------------------------GQCSKNYRGHGGSI  138 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch----------------------------hhhccceeccCccc
Confidence            46667778888754    45899999999999999876                            34556788999999


Q ss_pred             EEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEee---cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc----
Q 005277          425 YSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----  496 (704)
Q Consensus       425 ~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~----  496 (704)
                      +.+.|+|+. ++++++|.|.+||+|++++..++..+-   +|...|.++.|+++|.++++++.|.++++|++...+    
T Consensus       139 Neik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~  218 (385)
T KOG1034|consen  139 NEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK  218 (385)
T ss_pred             hhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence            999999987 578899999999999999999988864   699999999999999999999999999999997211    


Q ss_pred             ---------------------eeE---EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC-CCCcE------------
Q 005277          497 ---------------------PLR---IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV-SSGEC------------  539 (704)
Q Consensus       497 ---------------------~~~---~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~-~~~~~------------  539 (704)
                                           +..   +-.-|...|.|+.|-  |+++++-+.++.|..|-. +-++.            
T Consensus       219 lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~T  296 (385)
T KOG1034|consen  219 LELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATT  296 (385)
T ss_pred             hhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCcccee
Confidence                                 000   112467778888885  579999999999999976 21111            


Q ss_pred             -EEEeecCCCCEE--EEEEecCCCEEEEEeCCCeEEEEeCCCCeee--eeec--CCCceeeeeeeeeeehcccccccccc
Q 005277          540 -VRIFIGHRSMIL--SLAMSPDGRYMASGDEDGTIMMWDLASGRCV--TPLM--GHTSCVWTLAYRFLLLVTNAYLKISD  612 (704)
Q Consensus       540 -~~~~~~h~~~i~--~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~--~~~~--~h~~~V~sl~~~~~~~~~~~~~~~~~  612 (704)
                       +..+.-....|.  ..+|.|.+++||.|...|.|.+||++...+.  .++.  .....|...+|               
T Consensus       297 i~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sf---------------  361 (385)
T KOG1034|consen  297 ILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSF---------------  361 (385)
T ss_pred             eeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeee---------------
Confidence             222222233333  3456677899999999999999999987653  1221  11245666666               


Q ss_pred             ccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277          613 KVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVT  653 (704)
Q Consensus       613 ~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~  653 (704)
                                         |.||.+|+....|++|.-||.-
T Consensus       362 -------------------S~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  362 -------------------SRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             -------------------cccCcEEEEEeCCCcEEEEEee
Confidence                               9999999999999999999864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=1.1e-18  Score=182.92  Aligned_cols=266  Identities=23%  Similarity=0.352  Sum_probs=203.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (704)
                      .|..++|-|||..|+.+. +..+.|||.+.                            +.....+.||...|+|++|+.|
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~nd----------------------------G~llqtLKgHKDtVycVAys~d   64 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSD----------------------------GTLLQPLKGHKDTVYCVAYAKD   64 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCC----------------------------cccccccccccceEEEEEEccC
Confidence            688999999999887774 56788999876                            3466778999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEE
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~  512 (704)
                      |+.++||+.|..|.+|+-.-... ..| .|+..|.|+.|+|-.+.+++++- ...-+|..+...... . .....|.+++
T Consensus        65 GkrFASG~aDK~VI~W~~klEG~-LkY-SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K-~-kss~R~~~Cs  139 (1081)
T KOG1538|consen   65 GKRFASGSADKSVIIWTSKLEGI-LKY-SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSK-H-KSSSRIICCS  139 (1081)
T ss_pred             CceeccCCCceeEEEecccccce-eee-ccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHh-h-hhheeEEEee
Confidence            99999999999999998763332 233 49999999999999999999986 346789876543222 1 2345688899


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCC-----CEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDG-----RYMASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg-----~~l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                      |..||++++.|-.+|+|.+-+-.....++.-.  |.+.+|.+++|+|..     ..+++.....++.++.+. |+.+..-
T Consensus       140 WtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~  218 (1081)
T KOG1538|consen  140 WTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKD  218 (1081)
T ss_pred             ecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccc
Confidence            99999999999999999998653333333222  467799999999953     356667777777777664 3333222


Q ss_pred             cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccccc
Q 005277          586 MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS  665 (704)
Q Consensus       586 ~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~  665 (704)
                      +.-.-.-.++++                                  -++|.++..||.|+.+++|--+.           
T Consensus       219 r~L~FdP~CisY----------------------------------f~NGEy~LiGGsdk~L~~fTR~G-----------  253 (1081)
T KOG1538|consen  219 RALNFDPCCISY----------------------------------FTNGEYILLGGSDKQLSLFTRDG-----------  253 (1081)
T ss_pred             ccCCCCchhhee----------------------------------ccCCcEEEEccCCCceEEEeecC-----------
Confidence            211112234445                                  78999999999999999997543           


Q ss_pred             CccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          666 GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       666 ~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                           -.+.++...++.|..|+..|+++..+.|+-|||
T Consensus       254 -----vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGT  286 (1081)
T KOG1538|consen  254 -----VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGT  286 (1081)
T ss_pred             -----eEEeeccccceeEEEEEEccCCceEEEEEccCe
Confidence                 235667778889999999999999999999997

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=1.3e-16  Score=172.51  Aligned_cols=293  Identities=37%  Similarity=0.621  Sum_probs=226.6

Q ss_pred             eEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       331 ~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      .+.+|....+......+..|...|.+++|+|++.++++++. |+.+++|++..                           
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  187 (466)
T COG2319         135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT---------------------------  187 (466)
T ss_pred             cEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC---------------------------
Confidence            55666655445566678889999999999999999999986 99999999874                           


Q ss_pred             CccceeeccCCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeE-EeecCCcCeeEEEEcCCCCEEEEEeCCCeE
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i  487 (704)
                       ......+.+|...|.+++|+|++. .+++++.|++|++||...+.... .+.+|...+ ...|+|++.++++++.|+.+
T Consensus       188 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~  265 (466)
T COG2319         188 -GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTI  265 (466)
T ss_pred             -CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcE
Confidence             234455666999999999999998 55566999999999998777777 688888775 44899999899999999999


Q ss_pred             EEEECCCCce-eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCCCEEEE
Q 005277          488 RIWSMDRIQP-LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       488 ~lwd~~~~~~-~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~s  564 (704)
                      ++|++..... ...+.+|...|.++.|+|++..+++++.|+.+.+||..+........  .|...+..+.|.+++..++.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (466)
T COG2319         266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS  345 (466)
T ss_pred             EEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEE
Confidence            9999987665 45556788999999999988899889999999999999887776665  78888999999434355665


Q ss_pred             E-eCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE-Ee
Q 005277          565 G-DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS-GS  642 (704)
Q Consensus       565 g-~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las-gs  642 (704)
                      + ..|+.+.+|++...........+.. +..+.+                                  ++ ...++. +.
T Consensus       346 ~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------------------------------~~-~~~~~~~~~  389 (466)
T COG2319         346 GGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSF----------------------------------SP-DGRVVSSGS  389 (466)
T ss_pred             eecCCCcEEeeecCCCceeEEecCCce-EEEEEE----------------------------------CC-CCCEEEEec
Confidence            5 6889999999988773333332222 666666                                  55 344444 78


Q ss_pred             CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          643 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       643 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      .++.+.+|+..........               ......+....+++++..++.++.+++
T Consensus       390 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (466)
T COG2319         390 TDGTVRLWDLSTGSLLRNL---------------DGHTSRVTSLDFSPDGKSLASGSSDNT  435 (466)
T ss_pred             CCCceEEEecccCeeeeec---------------cCCCCcEEEEEECCCCcEEEEecCCCc
Confidence            9999999999886543211               111178899999999998888666543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.81  E-value=7.2e-19  Score=178.06  Aligned_cols=242  Identities=17%  Similarity=0.247  Sum_probs=183.7

Q ss_pred             eeccCCccCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCCC----ceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeE
Q 005277          415 TLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTA  487 (704)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~--~l~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i  487 (704)
                      ....-|.++|++++|+|..+  .+++|..-|+|-+||+.+.    ..+..+..|..+|.++.|+| +...+++.|.||+|
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti  259 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI  259 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence            34456889999999999765  7889999999999999633    23566788999999999999 56789999999999


Q ss_pred             EEEECCCCceeEEecc--CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE-EEEeecCCCCEEEEEEecC-CCEEE
Q 005277          488 RIWSMDRIQPLRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPD-GRYMA  563 (704)
Q Consensus       488 ~lwd~~~~~~~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~i~~l~~spd-g~~l~  563 (704)
                      ++-|+++......+..  ....+..+.|+.+...+++|..=|...+||.+++.. ...+.-|...|++++++|. ..+|+
T Consensus       260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la  339 (498)
T KOG4328|consen  260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA  339 (498)
T ss_pred             eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence            9999987643333332  445567788887777788887777999999998665 6666778889999999995 46789


Q ss_pred             EEeCCCeEEEEeCCCCee----eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEE
Q 005277          564 SGDEDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA  639 (704)
Q Consensus       564 sg~~dg~I~iwdl~~~~~----~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~la  639 (704)
                      +++.|++.+|||++.-..    +.....|...|.+..|                                  ||.+..|+
T Consensus       340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF----------------------------------SPs~gtl~  385 (498)
T KOG4328|consen  340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF----------------------------------SPSGGTLL  385 (498)
T ss_pred             ecccCcceeeeehhhhcCCCCcceecccccceeeeeEE----------------------------------cCCCCceE
Confidence            999999999999986432    2334568899999888                                  99988899


Q ss_pred             EEeCCCcEEEEeCC----CCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277          640 SGSADCTVKLWDVT----TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       640 sgs~Dg~V~iWd~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~  700 (704)
                      |.+.|+.|+|||..    .......+.+....          +.--......|.|+..++++|-+
T Consensus       386 TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t----------~RwlT~fKA~W~P~~~li~vg~~  440 (498)
T KOG4328|consen  386 TTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT----------GRWLTPFKAAWDPDYNLIVVGRY  440 (498)
T ss_pred             eeccCCceEEeecccccccCCccceeeccCcc----------cccccchhheeCCCccEEEEecc
Confidence            99999999999984    22221111111000          00112345688998888888864

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.81  E-value=1.7e-17  Score=159.03  Aligned_cols=292  Identities=20%  Similarity=0.244  Sum_probs=210.6

Q ss_pred             CCCeEEEEEeeCCCCEEEEEEcC--C-CCEEEEEeC----CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCc
Q 005277          339 LPSVSFYTFINTHNGLNCASISQ--D-GSLVAGGFS----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK  411 (704)
Q Consensus       339 ~p~~~~~~~~~~~~~V~~~~fs~--d-g~~lasg~~----dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (704)
                      .|..+.+.-.+.+-.+.++.||.  + +.+||.|+.    ...|.|-.++......                        
T Consensus        32 ~~r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~------------------------   87 (364)
T KOG0290|consen   32 NPRRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGEL------------------------   87 (364)
T ss_pred             CcccceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCce------------------------
Confidence            34444444456677899999993  3 568888874    4567777665311110                        


Q ss_pred             cceeeccCCccCeEEEEEcCCCC-----EEEEEeCCCeEEEEeCCCCceeE---------EeecCCcCeeEEEEcC-CCC
Q 005277          412 RSYTLYQGHSGPVYSASFSPLGD-----FILSSSADTTIRLWSTKLNANLV---------CYKGHNYPVWDVQFNP-QGH  476 (704)
Q Consensus       412 ~~~~~~~~h~~~V~~l~~sp~~~-----~l~s~s~Dg~I~lwd~~~~~~~~---------~~~~h~~~V~~v~~sp-~~~  476 (704)
                       ....-..|.-+++.+.|.|+..     +|+|++ | .+|+|.+.......         .-..+..|++++.|+. +-+
T Consensus        88 -~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~  164 (364)
T KOG0290|consen   88 -VEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN  164 (364)
T ss_pred             -eccCCCCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc
Confidence             1111146889999999999863     455444 3 79999987422111         1124678999999998 778


Q ss_pred             EEEEEeCCCeEEEEECCCCce---eEEeccCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEEEEe-ec--CCCC
Q 005277          477 YFASSSHDRTARIWSMDRIQP---LRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIF-IG--HRSM  549 (704)
Q Consensus       477 ~l~sgs~dg~i~lwd~~~~~~---~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~-~~--h~~~  549 (704)
                      ++.++|-|-++.|||++++..   ...+-.|...|..++|...+ +.+|+.+.||+||+||+|...-...+ ..  ...+
T Consensus       165 ~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p  244 (364)
T KOG0290|consen  165 LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP  244 (364)
T ss_pred             eeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Confidence            999999999999999998633   44556799999999999754 67889999999999999976543332 22  2457


Q ss_pred             EEEEEEec-CCCEEEEEeCC-CeEEEEeCCC-CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEE
Q 005277          550 ILSLAMSP-DGRYMASGDED-GTIMMWDLAS-GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTII  626 (704)
Q Consensus       550 i~~l~~sp-dg~~l~sg~~d-g~I~iwdl~~-~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (704)
                      ...++|++ |-+++|+-..| ..|.|.|++. +.++..+++|.++|..++|                             
T Consensus       245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaW-----------------------------  295 (364)
T KOG0290|consen  245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAW-----------------------------  295 (364)
T ss_pred             ceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEe-----------------------------
Confidence            88899998 45678775544 5799999986 4788999999999999999                             


Q ss_pred             eecccCCC-CCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc-CCcEEEEeecC
Q 005277          627 YFGCASCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RNLLFAAGALS  701 (704)
Q Consensus       627 ~~~~~s~~-g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~-~g~~La~gs~d  701 (704)
                           .|. +..|+|+|.|..+.|||+......         ....++..+. ..+.|..++|++ .+..++.+...
T Consensus       296 -----aPhS~~hictaGDD~qaliWDl~q~~~~---------~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  296 -----APHSSSHICTAGDDCQALIWDLQQMPRE---------NGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             -----cCCCCceeeecCCcceEEEEeccccccc---------CCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence                 444 578999999999999999875431         1123344443 677899999995 56667766543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=2.7e-18  Score=164.31  Aligned_cols=255  Identities=20%  Similarity=0.300  Sum_probs=194.6

Q ss_pred             EEeeCCCCEEEEEEcC-CCCEEEEEeCC-------CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec
Q 005277          346 TFINTHNGLNCASISQ-DGSLVAGGFSD-------SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~-dg~~lasg~~d-------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (704)
                      +|..|.+.|..++-+| |.++|+++..+       -.+-||.+.........                   .....+..+
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~-------------------~tlE~v~~L  118 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS-------------------STLECVASL  118 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc-------------------chhhHhhcC
Confidence            4677888999999998 56777777653       23679998753222110                   011222333


Q ss_pred             c-CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEee-----cCCcCeeEEEEcC--CCCEEEEEeCCCeEE
Q 005277          418 Q-GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-LVCYK-----GHNYPVWDVQFNP--QGHYFASSSHDRTAR  488 (704)
Q Consensus       418 ~-~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~-~~~~~-----~h~~~V~~v~~sp--~~~~l~sgs~dg~i~  488 (704)
                      . .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+.     +|....++-+|+|  +|+.+++. .|+++.
T Consensus       119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~  196 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ  196 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence            3 4567999999999999888776 77899999998766 22222     3566788889999  67877776 579999


Q ss_pred             EEECCCCceeEEec-cCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEecC-CCEEEE
Q 005277          489 IWSMDRIQPLRIMA-GHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPD-GRYMAS  564 (704)
Q Consensus       489 lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spd-g~~l~s  564 (704)
                      .||+++......+. .|...|..+.|+|+- .+|++++.||.|++||.|. ..++..+.+|...|.++.|+|. .++|.+
T Consensus       197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs  276 (370)
T KOG1007|consen  197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS  276 (370)
T ss_pred             EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence            99999877665554 688899999999985 4678899999999999984 5678889999999999999994 578889


Q ss_pred             EeCCCeEEEEeCCCC-----------------------------eeeeeecCCCceeeeeeeeeeehccccccccccccc
Q 005277          565 GDEDGTIMMWDLASG-----------------------------RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVS  615 (704)
Q Consensus       565 g~~dg~I~iwdl~~~-----------------------------~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~  615 (704)
                      |+.|..|.+|...+-                             ..+.++..|...|++++|.                 
T Consensus       277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS-----------------  339 (370)
T KOG1007|consen  277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS-----------------  339 (370)
T ss_pred             cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec-----------------
Confidence            999999999965421                             1233566788999999993                 


Q ss_pred             cceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          616 TGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       616 ~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                                      +.+.-++|+-+.||.|.|=.+..
T Consensus       340 ----------------sadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  340 ----------------SADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ----------------cCCCeeEEEeccCceEEeecCCh
Confidence                            66777889999999999977754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.2e-17  Score=156.25  Aligned_cols=241  Identities=19%  Similarity=0.249  Sum_probs=181.4

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (704)
                      .|.+-+|+|.+++|++|..+|.|-+++++.......                  .......+...++|.++|+.++|.  
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa------------------~~~gk~~iv~eqahdgpiy~~~f~--   71 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA------------------EPPGKLKIVPEQAHDGPIYYLAFH--   71 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc------------------CCCCCcceeeccccCCCeeeeeee--
Confidence            356668999999999999999999999876221110                  111234455668999999999999  


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCce------eE--EeecC-----CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277          433 GDFILSSSADTTIRLWSTKLNAN------LV--CYKGH-----NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~------~~--~~~~h-----~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      ..+|++|+ ||.|+-|..+....      +.  ...-|     -..|.++...|..+-++.++.|+.++-||+++++..+
T Consensus        72 d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r  150 (325)
T KOG0649|consen   72 DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR  150 (325)
T ss_pred             hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE
Confidence            56677776 59999998764322      10  01112     2358899999988778888899999999999999999


Q ss_pred             EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec---------CC-CCEEEEEEecCCCEEEEEeCCC
Q 005277          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---------HR-SMILSLAMSPDGRYMASGDEDG  569 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---------h~-~~i~~l~~spdg~~l~sg~~dg  569 (704)
                      .+++|.+.|.|+.-......+++|+.||++|+||.++++++.++..         |. ..|.+++.  +..+|++|+. .
T Consensus       151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p  227 (325)
T KOG0649|consen  151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-P  227 (325)
T ss_pred             EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-C
Confidence            9999999999999866666899999999999999999999987643         22 24666665  4668887765 4


Q ss_pred             eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                      .+.+|.+++.++...+. -...+..+.|                                    ....++++|..+.|.-
T Consensus       228 ~lslwhLrsse~t~vfp-ipa~v~~v~F------------------------------------~~d~vl~~G~g~~v~~  270 (325)
T KOG0649|consen  228 KLSLWHLRSSESTCVFP-IPARVHLVDF------------------------------------VDDCVLIGGEGNHVQS  270 (325)
T ss_pred             ceeEEeccCCCceEEEe-cccceeEeee------------------------------------ecceEEEeccccceee
Confidence            69999999988776664 2334555555                                    4557888888888888


Q ss_pred             EeCCC
Q 005277          650 WDVTT  654 (704)
Q Consensus       650 Wd~~~  654 (704)
                      |.+..
T Consensus       271 ~~l~G  275 (325)
T KOG0649|consen  271 YTLNG  275 (325)
T ss_pred             eeecc
Confidence            88754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.80  E-value=1e-17  Score=166.73  Aligned_cols=210  Identities=25%  Similarity=0.398  Sum_probs=168.0

Q ss_pred             ceeeccCCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC-------ceeEEeecCCcCeeEEEEcCC-CCEEEEEeC
Q 005277          413 SYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQ-GHYFASSSH  483 (704)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~  483 (704)
                      .+-...||+++|..++|+|.+. .|+|||.|.+|.||.+-.+       ..+..+.+|...|--|+|+|. .+.|++++.
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~  152 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS  152 (472)
T ss_pred             CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence            3445679999999999999665 6789999999999998644       447788999999999999994 578899999


Q ss_pred             CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC-CEEEEEEecCCCEE
Q 005277          484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYM  562 (704)
Q Consensus       484 dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~~l  562 (704)
                      |.+|.+|++.+++.+..+. |...|.+++|+.+|.+|++.+.|..|||||.++++.+..-.+|.+ .-..+.|-.+|..+
T Consensus       153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~  231 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF  231 (472)
T ss_pred             CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence            9999999999999888877 999999999999999999999999999999999999988888876 34566787889865


Q ss_pred             EEEe---CCCeEEEEeCCCCee---eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC
Q 005277          563 ASGD---EDGTIMMWDLASGRC---VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS  636 (704)
Q Consensus       563 ~sg~---~dg~I~iwdl~~~~~---~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  636 (704)
                      .+|.   .+..+-+||..+-..   ...+...+ .|.---|                                  .++.+
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gvl~PFy----------------------------------D~dt~  276 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSN-GVLLPFY----------------------------------DPDTS  276 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEeccCC-ceEEeee----------------------------------cCCCC
Confidence            5554   567899999765322   22232222 2222222                                  77777


Q ss_pred             EEE-EEeCCCcEEEEeCCCCccc
Q 005277          637 LLA-SGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       637 ~la-sgs~Dg~V~iWd~~~~~~~  658 (704)
                      +++ +|-.|+.||-|.+......
T Consensus       277 ivYl~GKGD~~IRYyEit~d~P~  299 (472)
T KOG0303|consen  277 IVYLCGKGDSSIRYFEITNEPPF  299 (472)
T ss_pred             EEEEEecCCcceEEEEecCCCce
Confidence            774 5558999999999886643

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=3.4e-18  Score=167.49  Aligned_cols=280  Identities=19%  Similarity=0.261  Sum_probs=196.7

Q ss_pred             CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC--CCEEEEEeC
Q 005277          364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL--GDFILSSSA  441 (704)
Q Consensus       364 ~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~  441 (704)
                      +.+|++.++|.|++||..+                            ...+..+.+|...++.+.|..+  ...+.+|+.
T Consensus        41 ~~vav~lSngsv~lyd~~t----------------------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ss   92 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT----------------------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSS   92 (376)
T ss_pred             eeEEEEecCCeEEEEeccc----------------------------hhhhheecCCCCcccceEEecCCCCCeeEEecc
Confidence            6799999999999999875                            3456677889999999999873  457889999


Q ss_pred             CCeEEEEeCCCCceeEE--eecCC-cCeeEEEEcCCCCEEEEEe----CCCeEEEEECCCCce-eEEe-ccCCCCeeEEE
Q 005277          442 DTTIRLWSTKLNANLVC--YKGHN-YPVWDVQFNPQGHYFASSS----HDRTARIWSMDRIQP-LRIM-AGHLSDVDCVR  512 (704)
Q Consensus       442 Dg~I~lwd~~~~~~~~~--~~~h~-~~V~~v~~sp~~~~l~sgs----~dg~i~lwd~~~~~~-~~~~-~~~~~~V~~v~  512 (704)
                      ||+|++||+++......  +..+. .+..+++.+..++.+++|+    .+-.+.+||++..+. ++.+ ..|..+|++++
T Consensus        93 DG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr  172 (376)
T KOG1188|consen   93 DGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR  172 (376)
T ss_pred             CCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence            99999999998766443  44454 4677777777888888885    577899999998765 5554 47999999999


Q ss_pred             EcC-CCCEEEEEECCCcEEEEeCCCCc---EEEEeecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEeCCCCeeeeeecC
Q 005277          513 WHI-NCNYIATGSSDKTVRLWDVSSGE---CVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRCVTPLMG  587 (704)
Q Consensus       513 ~~p-~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~h~~~i~~l~~spdg-~~l~sg~~dg~I~iwdl~~~~~~~~~~~  587 (704)
                      ||| +.++|++||.||-|.+||+....   .+.....|...|.++.|..++ +.|.+-+..+...+|++..+.....+..
T Consensus       173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~  252 (376)
T KOG1188|consen  173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN  252 (376)
T ss_pred             ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC
Confidence            999 46899999999999999997432   222233577889999999887 3588888899999999998876554432


Q ss_pred             CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC-CCcEEEEeCCCCccccccccccC
Q 005277          588 HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA-DCTVKLWDVTTSTKVLKTEEKSG  666 (704)
Q Consensus       588 h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~-Dg~V~iWd~~~~~~~~~~~~~~~  666 (704)
                      ..  +.....             .......+.+      ...| ..+...++.++. -|...++-+......        
T Consensus       253 ~~--~~~~d~-------------r~~~~~dY~I------~~~~-~~~~~~~~l~g~~~n~~~~~~~~~~~s~--------  302 (376)
T KOG1188|consen  253 PD--VSADDL-------------RKEDNCDYVI------NEHS-PGDKDTCALAGTDSNKGTIFPLVDTSSG--------  302 (376)
T ss_pred             cc--chhhhH-------------Hhhhhhhhee------eccc-CCCcceEEEeccccCceeEEEeeecccc--------
Confidence            21  000000             0000000000      0000 223445555544 677777766542211        


Q ss_pred             ccccccccccCC-CCcCeEEEEEccCCcEEEEeecCC
Q 005277          667 TNRLRSLKTLPT-KSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       667 ~~~~~~l~~~~~-~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                       .....+..+.+ |..-|.++.|...+.+|.+|+.||
T Consensus       303 -~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG  338 (376)
T KOG1188|consen  303 -SLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDG  338 (376)
T ss_pred             -cccCccccccCCcHHHHHHHhhhcccceeeccCCCc
Confidence             11133445555 667788999999999999999987

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.79  E-value=1.6e-17  Score=181.22  Aligned_cols=268  Identities=20%  Similarity=0.251  Sum_probs=201.7

Q ss_pred             eEeecCCCCCCeEEEEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       331 ~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      .+.+|+..-|....+ .+.....|+|+.|+|. ..++|.|+.+|.|.+||+.......                      
T Consensus       223 ~~~vW~~~~p~~Pe~-~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~----------------------  279 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPEL-VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP----------------------  279 (555)
T ss_pred             eEEEEecCCCCCceE-EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC----------------------
Confidence            467788777744444 3456789999999994 8899999999999999998643321                      


Q ss_pred             CccceeeccCCccCeEEEEEcCCCCE--EEEEeCCCeEEEEeCCCCcee------EEee------cCCcCeeEEEEcC-C
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPLGDF--ILSSSADTTIRLWSTKLNANL------VCYK------GHNYPVWDVQFNP-Q  474 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~--l~s~s~Dg~I~lwd~~~~~~~------~~~~------~h~~~V~~v~~sp-~  474 (704)
                      ..........|..+|+.+.|..+..-  ++++|.||.|..|+++.-...      ....      .....+++++|.+ +
T Consensus       280 ~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~  359 (555)
T KOG1587|consen  280 PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD  359 (555)
T ss_pred             CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC
Confidence            01223344579999999999775544  999999999999988743321      1111      1235688999999 6


Q ss_pred             CCEEEEEeCCCeEEEEECCCC--------ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCcEEEEeec
Q 005277          475 GHYFASSSHDRTARIWSMDRI--------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVRIFIG  545 (704)
Q Consensus       475 ~~~l~sgs~dg~i~lwd~~~~--------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~  545 (704)
                      ...|++|+.+|.|.--+-...        +....+..|.++|.++.++|-+..++..+.|.+|+||... ...++..+..
T Consensus       360 p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~  439 (555)
T KOG1587|consen  360 PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS  439 (555)
T ss_pred             CceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh
Confidence            677999999999887443221        1233556788999999999987766666669999999987 6677777778


Q ss_pred             CCCCEEEEEEecCC-CEEEEEeCCCeEEEEeCCCC--eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeee
Q 005277          546 HRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASG--RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYS  622 (704)
Q Consensus       546 h~~~i~~l~~spdg-~~l~sg~~dg~I~iwdl~~~--~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (704)
                      +...+++++|||.. ..++++..||.|.+||+...  .++.+...+....+.+.|                         
T Consensus       440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~-------------------------  494 (555)
T KOG1587|consen  440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW-------------------------  494 (555)
T ss_pred             ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec-------------------------
Confidence            88889999999964 57788889999999999654  445555445555555666                         


Q ss_pred             eeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          623 LTIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       623 ~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                               ++.|.+|++|...|++++|++...
T Consensus       495 ---------s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  495 ---------SPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ---------CCCCcEEEEecCCCcEEEEEcCch
Confidence                     888999999999999999999643

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=3.9e-17  Score=178.11  Aligned_cols=291  Identities=19%  Similarity=0.268  Sum_probs=215.0

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      .|.-.++|.++||+++++|+|..||.|.+|.--..                        .......+.+.-|..+|.+++
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------------------------~~~~~t~t~lHWH~~~V~~L~  258 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------------------------SDDSETCTLLHWHHDEVNSLS  258 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEecccc------------------------ccccccceEEEecccccceeE
Confidence            45555899999999999999999999999974320                        122346677888999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-----
Q 005277          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG-----  503 (704)
Q Consensus       429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~-----  503 (704)
                      |+++|.+|+||+..|.+.+|.+.+++ ..-+..-.++|..+.++||+.+.+....|+.|.+....+......+.+     
T Consensus       259 fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~  337 (792)
T KOG1963|consen  259 FSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPT  337 (792)
T ss_pred             EecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCC
Confidence            99999999999999999999999988 444455688999999999999999999999999998755443333332     


Q ss_pred             ------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-----c------CCCCEEEEEEecCCCEEEEEe
Q 005277          504 ------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-----G------HRSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       504 ------~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-----~------h~~~i~~l~~spdg~~l~sg~  566 (704)
                            ..+-.+.++++|..+.++-.+..|.|.+||+-+...+..+.     .      +...++.++.+..|.+++|+-
T Consensus       338 ~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E  417 (792)
T KOG1963|consen  338 PSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLE  417 (792)
T ss_pred             ccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEee
Confidence                  12335678899988888888899999999998877665542     1      223577888888899999863


Q ss_pred             --------CC--CeEEEEeCCCC----eeeeee-cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeeccc
Q 005277          567 --------ED--GTIMMWDLASG----RCVTPL-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA  631 (704)
Q Consensus       567 --------~d--g~I~iwdl~~~----~~~~~~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  631 (704)
                              .|  -.+++|-....    .+...+ .+|...+....+..                                
T Consensus       418 ~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~--------------------------------  465 (792)
T KOG1963|consen  418 ARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLN--------------------------------  465 (792)
T ss_pred             eeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEec--------------------------------
Confidence                    23  35777865432    222222 46776665555410                                


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          632 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       632 s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                      .+....++++|.||.++||-+.......+.   .....-..+..  .|..++.+.+|+.||.+|++|..+
T Consensus       466 ~~rs~~~vta~~dg~~KiW~~~~~~n~~k~---~s~W~c~~i~s--y~k~~i~a~~fs~dGslla~s~~~  530 (792)
T KOG1963|consen  466 PTRSVRCVTASVDGDFKIWVFTDDSNIYKK---SSNWTCKAIGS--YHKTPITALCFSQDGSLLAVSFDD  530 (792)
T ss_pred             CcccceeEEeccCCeEEEEEEecccccCcC---ccceEEeeeec--cccCcccchhhcCCCcEEEEecCC
Confidence            233348999999999999999765543221   11122222333  388999999999999999988665

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.78  E-value=1e-17  Score=175.84  Aligned_cols=261  Identities=18%  Similarity=0.305  Sum_probs=205.8

Q ss_pred             HhccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277          326 EDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (704)
Q Consensus       326 ~~~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (704)
                      -...+|+.+.+.+..+ .+.++.+|.+.|+|++|+.||+.+|+|+.|..|.||+-.-.+                     
T Consensus        29 lAAg~rlliyD~ndG~-llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---------------------   86 (1081)
T KOG1538|consen   29 LAAGSRLLVYDTSDGT-LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---------------------   86 (1081)
T ss_pred             EecCCEEEEEeCCCcc-cccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---------------------
Confidence            3445667776654433 355789999999999999999999999999999999854211                     


Q ss_pred             CCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (704)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg  485 (704)
                               ..-..|...|.|+.|+|-...|+||+-. ..-+|+... +.+..++ ....|.+.+|..||.+|+.|-.+|
T Consensus        87 ---------~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~q-K~V~K~k-ss~R~~~CsWtnDGqylalG~~nG  154 (1081)
T KOG1538|consen   87 ---------ILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQ-KSVSKHK-SSSRIICCSWTNDGQYLALGMFNG  154 (1081)
T ss_pred             ---------eeeeccCCeeeEeecCchHHHhhhcchh-hccccChhh-hhHHhhh-hheeEEEeeecCCCcEEEEeccCc
Confidence                     1223699999999999999999999875 578898773 3333333 345788999999999999999999


Q ss_pred             eEEEEECCCCceeEEec--cCCCCeeEEEEcCCC-----CEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC
Q 005277          486 TARIWSMDRIQPLRIMA--GHLSDVDCVRWHINC-----NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD  558 (704)
Q Consensus       486 ~i~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~~-----~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd  558 (704)
                      +|.+-+-.....+++-.  |..++|.+++|+|+.     ..+++.....++..|.+ +|+.+..-..-.-...|+.+.|+
T Consensus       155 TIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~N  233 (1081)
T KOG1538|consen  155 TISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTN  233 (1081)
T ss_pred             eEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccC
Confidence            99998764444333332  577899999999963     57888888888888887 45544433334456689999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEE
Q 005277          559 GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL  638 (704)
Q Consensus       559 g~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  638 (704)
                      |.++..||.|+.+++|- +.|-.+.++......||++..                                  .|+++.+
T Consensus       234 GEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~----------------------------------~PNsQ~v  278 (1081)
T KOG1538|consen  234 GEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQA----------------------------------KPNSQYV  278 (1081)
T ss_pred             CcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEE----------------------------------ccCCceE
Confidence            99999999999999997 677777777778889999988                                  9999999


Q ss_pred             EEEeCCCcEEEEeCCCCc
Q 005277          639 ASGSADCTVKLWDVTTST  656 (704)
Q Consensus       639 asgs~Dg~V~iWd~~~~~  656 (704)
                      +.|+.||+|..|++...+
T Consensus       279 ~~GCqDGTiACyNl~fST  296 (1081)
T KOG1538|consen  279 VVGCQDGTIACYNLIFST  296 (1081)
T ss_pred             EEEEccCeeehhhhHHhH
Confidence            999999999999986543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.78  E-value=7.6e-18  Score=163.65  Aligned_cols=210  Identities=24%  Similarity=0.404  Sum_probs=167.7

Q ss_pred             CCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc---CeEEEEEcCCCCEEE
Q 005277          361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG---PVYSASFSPLGDFIL  437 (704)
Q Consensus       361 ~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~l~  437 (704)
                      |+..++|+.+.+.-|++||.-+++......                          -..|..   .-.+++|+|||..|+
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~--------------------------~ydh~de~taAhsL~Fs~DGeqlf  174 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYR--------------------------AYDHQDEYTAAHSLQFSPDGEQLF  174 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchh--------------------------hhhhHHhhhhheeEEecCCCCeEe
Confidence            678899999999999999987744333211                          112322   335899999999998


Q ss_pred             EEeCCCeEEEEeC-CCCceeEEe-------ecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCe
Q 005277          438 SSSADTTIRLWST-KLNANLVCY-------KGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV  508 (704)
Q Consensus       438 s~s~Dg~I~lwd~-~~~~~~~~~-------~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V  508 (704)
                      +|- ..+|+++|+ +.|.....+       .+..+.|.+++|+| +...++.|+...++-|+.-....++..+.+|.+.|
T Consensus       175 aGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGv  253 (406)
T KOG2919|consen  175 AGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGV  253 (406)
T ss_pred             ecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCe
Confidence            776 468999999 444432222       13467899999999 55589999999999999999999999999999999


Q ss_pred             eEEEEcCCCCEEEEEEC-CCcEEEEeCCC-CcEEEEeecCCC---CEEEEEEecCCCEEEEEeCCCeEEEEeCCC-Ceee
Q 005277          509 DCVRWHINCNYIATGSS-DKTVRLWDVSS-GECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLAS-GRCV  582 (704)
Q Consensus       509 ~~v~~~p~~~~l~tgs~-dg~I~iwd~~~-~~~~~~~~~h~~---~i~~l~~spdg~~l~sg~~dg~I~iwdl~~-~~~~  582 (704)
                      +.++|+++|+.|++|+. |..|..||+|. +.++..+..|.+   .-.-....|+|++|++|+.||.|++||+.. +..+
T Consensus       254 ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~  333 (406)
T KOG2919|consen  254 THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV  333 (406)
T ss_pred             eeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence            99999999999999985 67899999985 455555655544   222355678999999999999999999998 7778


Q ss_pred             eeecCCCceeeeeee
Q 005277          583 TPLMGHTSCVWTLAY  597 (704)
Q Consensus       583 ~~~~~h~~~V~sl~~  597 (704)
                      ..+..|+.+|..+++
T Consensus       334 sv~~~~sd~vNgvsl  348 (406)
T KOG2919|consen  334 SVTGNYSDTVNGVSL  348 (406)
T ss_pred             cccccccccccceec
Confidence            888899999999988

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.78  E-value=5.4e-18  Score=160.52  Aligned_cols=249  Identities=17%  Similarity=0.278  Sum_probs=189.1

Q ss_pred             CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc-
Q 005277          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-  418 (704)
Q Consensus       340 p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  418 (704)
                      |.-++|.+.+|...|+|+.|-.+++ |.+|..-|.|.+|++.+..                            ....+. 
T Consensus         3 pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r----------------------------~~~~~r~   53 (323)
T KOG0322|consen    3 PPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTER----------------------------DLPLIRL   53 (323)
T ss_pred             CCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCc----------------------------cchhhhh
Confidence            4455777889999999999988776 8899999999999998732                            222333 


Q ss_pred             CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--------------E-------------ee-----------
Q 005277          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--------------C-------------YK-----------  460 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~--------------~-------------~~-----------  460 (704)
                      .|...|+.+.--|+ ..|.+-+.|+.+.+|++.-+..+.              .             +.           
T Consensus        54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D  132 (323)
T KOG0322|consen   54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD  132 (323)
T ss_pred             hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence            46677888887776 457777888888888876421110              0             00           


Q ss_pred             ---------------cCCcCeeEEEEcC-CCC--EEEEEeCCCeEEEEECCCCc----------eeEEeccCCCCeeEEE
Q 005277          461 ---------------GHNYPVWDVQFNP-QGH--YFASSSHDRTARIWSMDRIQ----------PLRIMAGHLSDVDCVR  512 (704)
Q Consensus       461 ---------------~h~~~V~~v~~sp-~~~--~l~sgs~dg~i~lwd~~~~~----------~~~~~~~~~~~V~~v~  512 (704)
                                     +..+.+.+..|.- .+.  +++.|-.+|.+.+||+.++.          .+.....|..+|.++.
T Consensus       133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld  212 (323)
T KOG0322|consen  133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD  212 (323)
T ss_pred             cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence                           1123444554322 233  35677799999999998863          3334457889999999


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCC--CcE-EE-EeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC
Q 005277          513 WHINCNYIATGSSDKTVRLWDVSS--GEC-VR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH  588 (704)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~--~~~-~~-~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h  588 (704)
                      |.+..+.=++|+.+..+.+|++..  +.+ ++ ...-.+-.|..+.+-||++.+|++|.||.|+||..++.+++..+.-|
T Consensus       213 yas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH  292 (323)
T KOG0322|consen  213 YASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH  292 (323)
T ss_pred             echhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh
Confidence            998777778888888999998863  322 11 12223346888999999999999999999999999999999999999


Q ss_pred             CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277          589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV  652 (704)
Q Consensus       589 ~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~  652 (704)
                      .+.|.+++|                                  +|+..++|++|.|++|.+|++
T Consensus       293 sagvn~vAf----------------------------------spd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  293 SAGVNAVAF----------------------------------SPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hcceeEEEe----------------------------------CCCCchhhhccCCceEEeeec
Confidence            999999999                                  999999999999999999986

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=7.2e-19  Score=188.87  Aligned_cols=265  Identities=24%  Similarity=0.400  Sum_probs=207.4

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      +.+|.+.|.|+.|...|.++++|+.|..|+||++.+                            ..+.....||++.|+.
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et----------------------------~~~lAs~rGhs~ditd  237 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET----------------------------ARCLASCRGHSGDITD  237 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccc----------------------------hhhhccCCCCccccch
Confidence            568999999999999999999999999999999765                            3455667899999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe----c
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM----A  502 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~----~  502 (704)
                      ++.+.++.+++++|.|..|++|.+..+..+..+.+|++.|++|+|+|-.    +.+.||++++||.+- .++...    .
T Consensus       238 lavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~  312 (1113)
T KOG0644|consen  238 LAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLK  312 (1113)
T ss_pred             hccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCC
Confidence            9999999999999999999999999999999999999999999999965    678999999999981 111111    1


Q ss_pred             -cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCe
Q 005277          503 -GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       503 -~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~  580 (704)
                       ....-+.++.|..++.-++||+.|+.-+.|.+..-.      .+...+.-+.++.+ ..+.+++-.+-.+++|++.+|.
T Consensus       313 ~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~  386 (1113)
T KOG0644|consen  313 FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ  386 (1113)
T ss_pred             cccccceeeeeccccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccch
Confidence             123457778888899999999999999888764211      12222222222222 2466677788899999999999


Q ss_pred             eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC-CEEEEEeCCCcEEEEeCCCCcccc
Q 005277          581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG-SLLASGSADCTVKLWDVTTSTKVL  659 (704)
Q Consensus       581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~lasgs~Dg~V~iWd~~~~~~~~  659 (704)
                      .+..+.+|...++.+.+                                  +|-. .+..+++.||+..|||+-.+.++.
T Consensus       387 l~H~l~ghsd~~yvLd~----------------------------------Hpfn~ri~msag~dgst~iwdi~eg~pik  432 (1113)
T KOG0644|consen  387 LLHNLMGHSDEVYVLDV----------------------------------HPFNPRIAMSAGYDGSTIIWDIWEGIPIK  432 (1113)
T ss_pred             hhhhhcccccceeeeee----------------------------------cCCCcHhhhhccCCCceEeeecccCCcce
Confidence            99999999999999998                                  6654 455789999999999998876543


Q ss_pred             ccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          660 KTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       660 ~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                      .+             .  .....+..-.||++|.-++...
T Consensus       433 ~y-------------~--~gh~kl~d~kFSqdgts~~lsd  457 (1113)
T KOG0644|consen  433 HY-------------F--IGHGKLVDGKFSQDGTSIALSD  457 (1113)
T ss_pred             ee-------------e--cccceeeccccCCCCceEecCC
Confidence            22             1  2244566678888877666543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.76  E-value=5.1e-17  Score=161.81  Aligned_cols=211  Identities=18%  Similarity=0.310  Sum_probs=170.5

Q ss_pred             EeeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          347 FINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      +.+|...|..++|+| +...||+|+.|.+|.||.+........                     ....+..+.||...|-
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~---------------------ltepvv~L~gH~rrVg  135 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD---------------------LTEPVVELYGHQRRVG  135 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC---------------------cccceEEEeecceeEE
Confidence            578999999999999 467899999999999999876432221                     1245678999999999


Q ss_pred             EEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277          426 SASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       426 ~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      -++|+|.. +.|+|++.|.+|.+|++.++..+..+. |...|+++.|+.+|.+|++.+.|+.|||||.++++.+..-.+|
T Consensus       136 ~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h  214 (472)
T KOG0303|consen  136 LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH  214 (472)
T ss_pred             EEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc
Confidence            99999976 467899999999999999999999888 9999999999999999999999999999999999998887777


Q ss_pred             CCC-eeEEEEcCCCCEEEEEE---CCCcEEEEeCCCCcE---EEEeecCCCCEEEEEEecCCCEEEE-EeCCCeEEEEeC
Q 005277          505 LSD-VDCVRWHINCNYIATGS---SDKTVRLWDVSSGEC---VRIFIGHRSMILSLAMSPDGRYMAS-GDEDGTIMMWDL  576 (704)
Q Consensus       505 ~~~-V~~v~~~p~~~~l~tgs---~dg~I~iwd~~~~~~---~~~~~~h~~~i~~l~~spdg~~l~s-g~~dg~I~iwdl  576 (704)
                      .+. -..+.|-.++.++.||-   ++..+-+||..+-..   ...+ ..++.|.---|.||...++. |-.|+.|+.|.+
T Consensus       215 eG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi  293 (472)
T KOG0303|consen  215 EGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI  293 (472)
T ss_pred             cCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEe-ccCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence            653 44566778888665553   578899999765332   2222 33456666678888877765 558999999998


Q ss_pred             CCCe
Q 005277          577 ASGR  580 (704)
Q Consensus       577 ~~~~  580 (704)
                      ....
T Consensus       294 t~d~  297 (472)
T KOG0303|consen  294 TNEP  297 (472)
T ss_pred             cCCC
Confidence            7654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.75  E-value=1.4e-16  Score=155.07  Aligned_cols=227  Identities=18%  Similarity=0.245  Sum_probs=181.5

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      .++--..+|+|.+|++|++.+|++..+..|.||......                         .......+..|...|+
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-------------------------~w~~~htls~Hd~~vt   59 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-------------------------LWEPAHTLSEHDKIVT   59 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC-------------------------CceeceehhhhCccee
Confidence            344456789999999999999999999999999976521                         1345577888999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee----
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKL---NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL----  498 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~---~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~----  498 (704)
                      +++|+|..+.|++|+.|..-++|....   .+....+..++..+++|.|+|.++.||+|+..+.|.||-.+...--    
T Consensus        60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK  139 (361)
T KOG1523|consen   60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK  139 (361)
T ss_pred             EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence            999999999999999999999999843   3455566779999999999999999999999999999988764322    


Q ss_pred             EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-----C-------------CcEEEEeecCCCCEEEEEEecCCC
Q 005277          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-----S-------------GECVRIFIGHRSMILSLAMSPDGR  560 (704)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-----~-------------~~~~~~~~~h~~~i~~l~~spdg~  560 (704)
                      .+-..+.+.|.++.|||++-++++|+.|+.+|++..-     .             |..+..+....+.+..+.|+|+|.
T Consensus       140 hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~  219 (361)
T KOG1523|consen  140 HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN  219 (361)
T ss_pred             hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence            2234567889999999999999999999999999641     1             223334445667899999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCe-eeeeecCCCceeeeeee
Q 005277          561 YMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       561 ~l~sg~~dg~I~iwdl~~~~-~~~~~~~h~~~V~sl~~  597 (704)
                      .|+-.+.|+.+.+-|..... .+.....-.-+..++.|
T Consensus       220 ~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~  257 (361)
T KOG1523|consen  220 RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSW  257 (361)
T ss_pred             EeeEecCCCceEEeecCCCchhccchhhccCCceeeEe
Confidence            99999999999999977654 33333333356666666

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=1.8e-16  Score=174.53  Aligned_cols=282  Identities=21%  Similarity=0.273  Sum_probs=197.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC-
Q 005277          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP-  431 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-  431 (704)
                      .-..+.|+|-...++++...-.|+|||..........                         ..-......|+.+.+-. 
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F-------------------------~n~~~~~t~Vs~l~liNe 1120 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGF-------------------------DNGAFPDTRVSDLELINE 1120 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccc-------------------------cCCCCCCCccceeeeecc
Confidence            4567888998889999988889999999863221100                         00011235688888764 


Q ss_pred             -CCCEEEEEeCCCeEEEEeCCC-----CceeEEeec-------CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 005277          432 -LGDFILSSSADTTIRLWSTKL-----NANLVCYKG-------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (704)
Q Consensus       432 -~~~~l~s~s~Dg~I~lwd~~~-----~~~~~~~~~-------h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~  498 (704)
                       |..++++|+.||.||||+--.     .+.+..+.+       -.+.=.-+.|.....+++++|.-+.|+|||..+...+
T Consensus      1121 ~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~ 1200 (1387)
T KOG1517|consen 1121 QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVV 1200 (1387)
T ss_pred             cchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeE
Confidence             335788999999999997321     122222221       1111134678776666666666899999999987776


Q ss_pred             EEec-cCCCCeeEEEEc-CCCCEEEEEECCCcEEEEeCCCC---cEEEEeecCCCC--EEEEEEecCCCE-EEEEeCCCe
Q 005277          499 RIMA-GHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSM--ILSLAMSPDGRY-MASGDEDGT  570 (704)
Q Consensus       499 ~~~~-~~~~~V~~v~~~-p~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~--i~~l~~spdg~~-l~sg~~dg~  570 (704)
                      ..+. +....|+++.-+ +.|+.|++|..||.|++||.|..   ..+...+.|+..  |..+.+.+.|-- |++|+.||.
T Consensus      1201 ~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1201 ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred             eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe
Confidence            6554 344556666544 35799999999999999999854   357778889887  999999997754 999999999


Q ss_pred             EEEEeCCCCeeeee--ecCCC--c-eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277          571 IMMWDLASGRCVTP--LMGHT--S-CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC  645 (704)
Q Consensus       571 I~iwdl~~~~~~~~--~~~h~--~-~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg  645 (704)
                      |++||++.......  +..|.  + .++++..                                  +++..++|+|+. +
T Consensus      1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V----------------------------------H~hapiiAsGs~-q 1325 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTV----------------------------------HEHAPIIASGSA-Q 1325 (1387)
T ss_pred             EEEEecccCcccccceeeeccccCccceeeee----------------------------------ccCCCeeeecCc-c
Confidence            99999998533222  22232  2 4677766                                  888999999999 9


Q ss_pred             cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          646 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       646 ~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      .|+||++....... ....        -..+....+++.|++|+|.-.+||+|+.|.+
T Consensus      1326 ~ikIy~~~G~~l~~-~k~n--------~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~ 1374 (1387)
T KOG1517|consen 1326 LIKIYSLSGEQLNI-IKYN--------PGFMGQRIGSVSCLAFHPHRLLLAAGSADST 1374 (1387)
T ss_pred             eEEEEecChhhhcc-cccC--------cccccCcCCCcceeeecchhHhhhhccCCce
Confidence            99999987644211 1110        1122334567899999999999999988764

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.74  E-value=8e-17  Score=165.71  Aligned_cols=204  Identities=19%  Similarity=0.303  Sum_probs=166.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEE
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~  512 (704)
                      ...++.++.||.+.+.+-. ++.-..+..|.+.|.+-.|+|+|.-+++++.||.|++|.-.. -....+.....+|.|++
T Consensus        75 ~d~~~i~s~DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQNEESIRCAR  152 (737)
T ss_pred             cceEEEEcCCceEEEeccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhhcCceeEEEE
Confidence            3568888999999998765 666677788999999999999999999999999999998533 22233445667899999


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCcee
Q 005277          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV  592 (704)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V  592 (704)
                      |.|+++-++.+ ..+.+.|=.+.....+-..+.|.+-|.++.|+|..+.+++||+|-..+||| ..|+.+..-..|.-+|
T Consensus       153 W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD-~~G~~Lf~S~~~ey~I  230 (737)
T KOG1524|consen  153 WAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD-AQGANLFTSAAEEYAI  230 (737)
T ss_pred             ECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeec-ccCcccccCChhccce
Confidence            99998777665 345677777776666667889999999999999999999999999999999 5678888888999999


Q ss_pred             eeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcccccc
Q 005277          593 WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS  672 (704)
Q Consensus       593 ~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~  672 (704)
                      ++++|                                  .|+ ..++.||.+ ++|+   .+                  
T Consensus       231 TSva~----------------------------------npd-~~~~v~S~n-t~R~---~~------------------  253 (737)
T KOG1524|consen  231 TSVAF----------------------------------NPE-KDYLLWSYN-TARF---SS------------------  253 (737)
T ss_pred             eeeee----------------------------------ccc-cceeeeeee-eeee---cC------------------
Confidence            99999                                  888 666666643 4441   11                  


Q ss_pred             ccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          673 LKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       673 l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                           ...+.|..++||+||.-+++|+..|
T Consensus       254 -----p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  254 -----PRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             -----CCccceEEEEEcCCCceeeccccCc
Confidence                 2356799999999999999998876

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.74  E-value=1.2e-16  Score=160.08  Aligned_cols=265  Identities=21%  Similarity=0.285  Sum_probs=191.5

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      .+..|+..|+++.|+|+|.+||+|+.+|.|.+|........        ..+.  ...  ...........+.+|...|+
T Consensus        60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~--------~~d~--e~~--~~ke~w~v~k~lr~h~~diy  127 (434)
T KOG1009|consen   60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF--------DADT--EAD--LNKEKWVVKKVLRGHRDDIY  127 (434)
T ss_pred             cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc--------cccc--hhh--hCccceEEEEEecccccchh
Confidence            35678889999999999999999999999999986531000        0000  000  00112345567889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec---
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA---  502 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~---  502 (704)
                      .++|+|++.++++++.|.++++||+..|.....+..|...|..++|.|-++++++-+.|+..+.+.+...+.+....   
T Consensus       128 dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~  207 (434)
T KOG1009|consen  128 DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDI  207 (434)
T ss_pred             hhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeE
Confidence            99999999999999999999999999999999999999999999999999999999999977777665332221110   


Q ss_pred             -------c---------CC----CCeeEEEEcCCCCEEEEEE----CCC-----cEEEEeCCC-CcEEEEeecCCCCEEE
Q 005277          503 -------G---------HL----SDVDCVRWHINCNYIATGS----SDK-----TVRLWDVSS-GECVRIFIGHRSMILS  552 (704)
Q Consensus       503 -------~---------~~----~~V~~v~~~p~~~~l~tgs----~dg-----~I~iwd~~~-~~~~~~~~~h~~~i~~  552 (704)
                             .         |.    .-...++|+|+|..+++.+    ..+     +.++++-.. .++...+.....+...
T Consensus       208 m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~la  287 (434)
T KOG1009|consen  208 MPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALA  287 (434)
T ss_pred             eeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEE
Confidence                   0         11    1134578999999998854    122     234444321 2333444444555555


Q ss_pred             EEEec------------------CCCEEEEEeCCCeEEEEeCCCCeeeeeec-CCCceeeeeeeeeeehccccccccccc
Q 005277          553 LAMSP------------------DGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYRFLLLVTNAYLKISDK  613 (704)
Q Consensus       553 l~~sp------------------dg~~l~sg~~dg~I~iwdl~~~~~~~~~~-~h~~~V~sl~~~~~~~~~~~~~~~~~~  613 (704)
                      +.|+|                  .+-.++.++. ..|.+||..+..++.... -|-..++.++|                
T Consensus       288 vr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaw----------------  350 (434)
T KOG1009|consen  288 VRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAW----------------  350 (434)
T ss_pred             EEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceee----------------
Confidence            66555                  2223455554 579999999888777664 47789999999                


Q ss_pred             cccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          614 VSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                                        +++|..++..|.||-..+--++..+.
T Consensus       351 ------------------s~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  351 ------------------SDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             ------------------cCCCcEEEEeccCCceEEEEEcchhc
Confidence                              99999999999999888877766543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.74  E-value=2.6e-16  Score=171.82  Aligned_cols=237  Identities=16%  Similarity=0.221  Sum_probs=181.2

Q ss_pred             CccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce--eEE----eecCCcCeeEEEEcCCC--CEEEEEeCCCeEEEE
Q 005277          420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN--LVC----YKGHNYPVWDVQFNPQG--HYFASSSHDRTARIW  490 (704)
Q Consensus       420 h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~--~~~----~~~h~~~V~~v~~sp~~--~~l~sgs~dg~i~lw  490 (704)
                      -..+|.++.|+|... +++.|+.+|.|.+||++.+..  ...    ...|..+|+.+.|..+.  .-|++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            357899999999654 677889999999999987655  222    23588999999998754  449999999999999


Q ss_pred             ECCCCce-eE-----Eec------cCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCC---CC-----cEEEEeecCCCC
Q 005277          491 SMDRIQP-LR-----IMA------GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS---SG-----ECVRIFIGHRSM  549 (704)
Q Consensus       491 d~~~~~~-~~-----~~~------~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~---~~-----~~~~~~~~h~~~  549 (704)
                      +++.... ..     ...      .....+++++|.| +.+.+++|+.+|.|.--+-.   .+     +.+..+..|.++
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            9875332 11     111      1234688999997 46778999999998874332   22     223356678899


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEeCC-CCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277          550 ILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF  628 (704)
Q Consensus       550 i~~l~~spdg~~l~sg~~dg~I~iwdl~-~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (704)
                      |+++.++|-+..++..+.|.+++||... ...++..+..+...|++++|                               
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW-------------------------------  449 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAW-------------------------------  449 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEE-------------------------------
Confidence            9999999987766655559999999988 67788888888888999999                               


Q ss_pred             cccCCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          629 GCASCEG-SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       629 ~~~s~~g-~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                         ||-. .+++++..||.|.|||+.....             .++.+.+......+.+.|++.|++|++|...|+
T Consensus       450 ---SptrpavF~~~d~~G~l~iWDLl~~~~-------------~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~  509 (555)
T KOG1587|consen  450 ---SPTRPAVFATVDGDGNLDIWDLLQDDE-------------EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGT  509 (555)
T ss_pred             ---cCcCceEEEEEcCCCceehhhhhcccc-------------CCcccccccccccceeecCCCCcEEEEecCCCc
Confidence               7754 5788999999999999987543             334445445667788899999999999999986

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=6.9e-15  Score=156.21  Aligned_cols=248  Identities=14%  Similarity=0.232  Sum_probs=165.0

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGF-SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~-~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      ....+.+....++++|++++|++++ .++.|.+|+++..+...                         .... ....+..
T Consensus        29 ~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-------------------------~~~~-~~~~~~p   82 (330)
T PRK11028         29 QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-------------------------FAAE-SPLPGSP   82 (330)
T ss_pred             eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-------------------------Eeee-ecCCCCc
Confidence            3344556788899999999887764 58889999986311100                         0000 0122345


Q ss_pred             EEEEEcCCCCEEEEEe-CCCeEEEEeCCCCc----eeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCcee
Q 005277          425 YSASFSPLGDFILSSS-ADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPL  498 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s-~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~~~~~~~  498 (704)
                      ..++|+|++++|++++ .++.|.+|+++...    .+..+. +.....+++++|+++++++++ .++.|.+||+++...+
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l  161 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL  161 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence            6899999999988776 48899999997432    222222 233467789999999886554 6699999999763322


Q ss_pred             EE-----e-ccCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCC--Cc--EEEEeecC------CCCEEEEEEecCCCE
Q 005277          499 RI-----M-AGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSS--GE--CVRIFIGH------RSMILSLAMSPDGRY  561 (704)
Q Consensus       499 ~~-----~-~~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~~--~~--~~~~~~~h------~~~i~~l~~spdg~~  561 (704)
                      ..     . .........+.|+|+++++++++. +++|.+||+..  +.  .+..+..+      ......+.++|+|++
T Consensus       162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~  241 (330)
T PRK11028        162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH  241 (330)
T ss_pred             cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence            11     1 112344678999999999988876 89999999973  33  23333211      122346899999999


Q ss_pred             EEEEe-CCCeEEEEeCCCCeeeeeecCCC---ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277          562 MASGD-EDGTIMMWDLASGRCVTPLMGHT---SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL  637 (704)
Q Consensus       562 l~sg~-~dg~I~iwdl~~~~~~~~~~~h~---~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  637 (704)
                      ++++. .++.|.+|++........+.++.   .....+.+                                  +++|++
T Consensus       242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~----------------------------------~~dg~~  287 (330)
T PRK11028        242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNI----------------------------------DHSGKY  287 (330)
T ss_pred             EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEE----------------------------------CCCCCE
Confidence            99885 47899999986532211222221   12234445                                  999999


Q ss_pred             EEEEeC-CCcEEEEeCCC
Q 005277          638 LASGSA-DCTVKLWDVTT  654 (704)
Q Consensus       638 lasgs~-Dg~V~iWd~~~  654 (704)
                      |++++. +++|.+|++..
T Consensus       288 l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        288 LIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EEEEEccCCcEEEEEEcC
Confidence            987775 89999998864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=2.8e-16  Score=172.37  Aligned_cols=220  Identities=19%  Similarity=0.239  Sum_probs=155.8

Q ss_pred             eeccCCccCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCce--eEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEE
Q 005277          415 TLYQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTAR  488 (704)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~l~s~s~D---g~I~lwd~~~~~~--~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~  488 (704)
                      ..+..|...+.+.+|+|||+.|+.++.+   ..|++||+.++..  +..+.+|   ...++|+|+|+.++.++ .+|.+.
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~  273 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN  273 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence            3455677889999999999999877643   4799999987754  3333333   44689999999888765 678766


Q ss_pred             EE--ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277          489 IW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       489 lw--d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~~l~s  564 (704)
                      ||  |+.++. ...+..+...+....|+|+|+.|+.++ .+|...||++.. +.....+ .+..  .+..|+|||++|+.
T Consensus       274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~  349 (429)
T PRK01742        274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVM  349 (429)
T ss_pred             EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEE
Confidence            55  665554 444556677788999999999877655 578888887653 2222333 3443  46789999999988


Q ss_pred             EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD  644 (704)
Q Consensus       565 g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D  644 (704)
                      ++.++ +.+||+.+++.......+  ...+..|                                  +|+|++|+.++.+
T Consensus       350 ~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~----------------------------------sPdG~~i~~~s~~  392 (429)
T PRK01742        350 INGDN-VVKQDLTSGSTEVLSSTF--LDESPSI----------------------------------SPNGIMIIYSSTQ  392 (429)
T ss_pred             EcCCC-EEEEECCCCCeEEecCCC--CCCCceE----------------------------------CCCCCEEEEEEcC
Confidence            87765 566999888654322222  2345667                                  9999999999999


Q ss_pred             CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccC
Q 005277          645 CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR  691 (704)
Q Consensus       645 g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~  691 (704)
                      |.+.+|.+.....             ..+..+..+.+.+...+|+|.
T Consensus       393 g~~~~l~~~~~~G-------------~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        393 GLGKVLQLVSADG-------------RFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCceEEEEEECCC-------------CceEEccCCCCCCCCcccCCC
Confidence            9999888643111             224455667777888999985

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.72  E-value=4.5e-16  Score=149.40  Aligned_cols=251  Identities=18%  Similarity=0.292  Sum_probs=179.0

Q ss_pred             HHhccCeEeecCCCCCCeEEE--EEeeCCCCEEEEEEcCCC-----CEEEEEeCCCcEEEEEcccCCccccccccCCCCC
Q 005277          325 LEDLRNRVHLSSAALPSVSFY--TFINTHNGLNCASISQDG-----SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND  397 (704)
Q Consensus       325 ~~~~~~~~~l~~~~~p~~~~~--~~~~~~~~V~~~~fs~dg-----~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~  397 (704)
                      .++.++++.+-.....+-...  .-+.|.-+++.+-|.|+.     .+||+.  +-++|+|.+...........      
T Consensus        68 ~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~------  139 (364)
T KOG0290|consen   68 IEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQS------  139 (364)
T ss_pred             ccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhh------
Confidence            455666665543322222111  125788899999999985     366665  46899999874211110000      


Q ss_pred             CCCcccccCCCCCccceeeccCCccCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCce---eEEeecCCcCeeEEEEcC
Q 005277          398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNP  473 (704)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~v~~sp  473 (704)
                            ..       .......+.+++++..|+. +-+++.++|-|.|..|||++++..   ...+-.|...|.+|+|..
T Consensus       140 ------~L-------~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~  206 (364)
T KOG0290|consen  140 ------VL-------NNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK  206 (364)
T ss_pred             ------hh-------ccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEecc
Confidence                  00       0011234678999999987 446788999999999999998733   556778999999999998


Q ss_pred             CC-CEEEEEeCCCeEEEEECCCCceeEEecc---CCCCeeEEEEcC-CCCEEEEEECC-CcEEEEeCCC-CcEEEEeecC
Q 005277          474 QG-HYFASSSHDRTARIWSMDRIQPLRIMAG---HLSDVDCVRWHI-NCNYIATGSSD-KTVRLWDVSS-GECVRIFIGH  546 (704)
Q Consensus       474 ~~-~~l~sgs~dg~i~lwd~~~~~~~~~~~~---~~~~V~~v~~~p-~~~~l~tgs~d-g~I~iwd~~~-~~~~~~~~~h  546 (704)
                      .+ ..||+.|.||.+|+||++......++..   ...+...++|++ +.+++|+-..| ..|.|.|+|. ..++..+.+|
T Consensus       207 ~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H  286 (364)
T KOG0290|consen  207 GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH  286 (364)
T ss_pred             CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC
Confidence            54 5799999999999999998665444432   245678889986 56788885544 5699999985 5678889999


Q ss_pred             CCCEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCee------eeeecCCCceeeeeee
Q 005277          547 RSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRC------VTPLMGHTSCVWTLAY  597 (704)
Q Consensus       547 ~~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~~------~~~~~~h~~~V~sl~~  597 (704)
                      .+.|+.++|.|. +..|+++|+|..+.|||+.+.-.      +..+. ..+.|..+.|
T Consensus       287 ~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~W  343 (364)
T KOG0290|consen  287 QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQW  343 (364)
T ss_pred             cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeee
Confidence            999999999995 56899999999999999975321      11222 4578889999

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=1.2e-16  Score=166.26  Aligned_cols=232  Identities=23%  Similarity=0.416  Sum_probs=177.6

Q ss_pred             CCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec
Q 005277          338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (704)
Q Consensus       338 ~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (704)
                      ..-....++|.+|.++|.|++.++++..+.+|+-||+|+.|++.....         ..+         ..........+
T Consensus       331 ~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d---------p~d---------s~dp~vl~~~l  392 (577)
T KOG0642|consen  331 EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD---------PDD---------SYDPSVLSGTL  392 (577)
T ss_pred             ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC---------ccc---------ccCcchhccce
Confidence            344567899999999999999999999999999999999999863110         000         00112344568


Q ss_pred             cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee---cCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECC
Q 005277          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMD  493 (704)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~  493 (704)
                      .||.+.|..+++|+....|++|+.||++++|+...... .++.   .|..| .++.+-... ...++...-+.-.+.+++
T Consensus       393 ~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P-lsvd~~ss~~a~~~~s~~~~~~~~~~~e  470 (577)
T KOG0642|consen  393 LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP-LSVDRTSSRPAHSLASFRFGYTSIDDME  470 (577)
T ss_pred             eccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc-ceEeeccchhHhhhhhcccccccchhhh
Confidence            89999999999999999999999999999999876655 3332   23333 355554322 223333333444455555


Q ss_pred             CCceeEEeccC-------CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe
Q 005277          494 RIQPLRIMAGH-------LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       494 ~~~~~~~~~~~-------~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~  566 (704)
                      ....+..+...       ...+.-+.+||+..+.+++..|+.|+++|..+++.+.....|...++++++.|+|-+|++|+
T Consensus       471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s  550 (577)
T KOG0642|consen  471 VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS  550 (577)
T ss_pred             hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeec
Confidence            55555555421       24577889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCeeeeeecCCC
Q 005277          567 EDGTIMMWDLASGRCVTPLMGHT  589 (704)
Q Consensus       567 ~dg~I~iwdl~~~~~~~~~~~h~  589 (704)
                      .||.+++|.+....++.....|.
T Consensus       551 ~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  551 HDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             CCceeehhhccchheeecccccc
Confidence            99999999998888877776665

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.70  E-value=8.4e-16  Score=149.69  Aligned_cols=230  Identities=21%  Similarity=0.303  Sum_probs=179.9

Q ss_pred             CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC-C-
Q 005277          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-R-  494 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~-~-  494 (704)
                      -..+|+|.+|++|+..++.+.....|.||.....+   ...+++.|...|+.|+|+|..+.|++|+.|+..++|... . 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            34789999999999999999999999999987554   678889999999999999999999999999999999983 3 


Q ss_pred             -CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEE----EEeecCCCCEEEEEEecCCCEEEEEeCCC
Q 005277          495 -IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV----RIFIGHRSMILSLAMSPDGRYMASGDEDG  569 (704)
Q Consensus       495 -~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~----~~~~~h~~~i~~l~~spdg~~l~sg~~dg  569 (704)
                       .++...+..+....+||.|+|+++.||+|+.-..|.+|-+.....-    +.-+.+...|+++.|+|++-+|++|+.|+
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~  168 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG  168 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence             3455666678999999999999999999999999999987654332    12235677899999999999999999999


Q ss_pred             eEEEEeCCC------------------CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeeccc
Q 005277          570 TIMMWDLAS------------------GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA  631 (704)
Q Consensus       570 ~I~iwdl~~------------------~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  631 (704)
                      ..+++..--                  |.++..+....+.+..+.|                                  
T Consensus       169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f----------------------------------  214 (361)
T KOG1523|consen  169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF----------------------------------  214 (361)
T ss_pred             ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe----------------------------------
Confidence            999996421                  1222233333455556666                                  


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEE
Q 005277          632 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA  697 (704)
Q Consensus       632 s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~  697 (704)
                      +|+|..|+-.+.|++|.+=|...+..              .+.......-|..++.|-.+...+++
T Consensus       215 s~sG~~lawv~Hds~v~~~da~~p~~--------------~v~~~~~~~lP~ls~~~ise~~vv~a  266 (361)
T KOG1523|consen  215 SPSGNRLAWVGHDSTVSFVDAAGPSE--------------RVQSVATAQLPLLSVSWISENSVVAA  266 (361)
T ss_pred             CCCCCEeeEecCCCceEEeecCCCch--------------hccchhhccCCceeeEeecCCceeec
Confidence            99999999999999999999877642              12223333356667777666554443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=2.4e-16  Score=159.07  Aligned_cols=195  Identities=25%  Similarity=0.370  Sum_probs=156.3

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC
Q 005277          355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD  434 (704)
Q Consensus       355 ~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  434 (704)
                      .+++|+.+|..|++|+.||++|||++..+                            ........|.+.|.++.|+||++
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~----------------------------~t~l~e~~~~~eV~DL~FS~dgk  199 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM----------------------------LTILEEIAHHAEVKDLDFSPDGK  199 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc----------------------------hhhhhhHhhcCccccceeCCCCc
Confidence            78999999999999999999999998752                            23344567999999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEee--cCCcCeeEEEEcCCC-----CEEEEEeCCCeEEEEECCCCc-----eeEEec
Q 005277          435 FILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQG-----HYFASSSHDRTARIWSMDRIQ-----PLRIMA  502 (704)
Q Consensus       435 ~l~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~-----~~l~sgs~dg~i~lwd~~~~~-----~~~~~~  502 (704)
                      +|++-+.| ..+||+++++..+....  ........+.|+.++     ..++.....+.|+.|++....     +.+...
T Consensus       200 ~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~  278 (398)
T KOG0771|consen  200 FLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI  278 (398)
T ss_pred             EEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh
Confidence            99999999 89999999997665554  234456678888776     334444556677777664322     222222


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                      .....|.+++.+++|++++.|+.||.|-|++..+-+++..++ .|...|+.+.|+||.+++++.+.|..+.+..+.-
T Consensus       279 ~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  279 KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            344579999999999999999999999999999888776654 7999999999999999999999999998887754

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.7e-15  Score=166.15  Aligned_cols=216  Identities=19%  Similarity=0.205  Sum_probs=156.8

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (704)
                      .+..+...+.+.+|||||+.||.++.+   ..|.+||+.+..                          ......+.+|  
T Consensus       198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~--------------------------~~~l~~~~g~--  249 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA--------------------------RKVVASFRGH--  249 (429)
T ss_pred             EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc--------------------------eEEEecCCCc--
Confidence            355677789999999999999987654   469999986521                          1122223333  


Q ss_pred             CeEEEEEcCCCCEEEEE-eCCCeEEEE--eCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCC-ce
Q 005277          423 PVYSASFSPLGDFILSS-SADTTIRLW--STKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRI-QP  497 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~-s~Dg~I~lw--d~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~~~~-~~  497 (704)
                       ..+++|+|||+.|+.+ +.+|.+.||  |+.++. ...+..+...+....|+|+|+.++.++ .+|...||+++.. ..
T Consensus       250 -~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~  327 (429)
T PRK01742        250 -NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG  327 (429)
T ss_pred             -cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence             3468999999988865 468876665  555544 455666777788999999999877655 5788888887542 22


Q ss_pred             eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC-
Q 005277          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL-  576 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl-  576 (704)
                      ...+ .+..  .+..|+|+|++|++++.++ +.+||+.+++.......+  ...++.|+|||++|++++.+|.+.+|++ 
T Consensus       328 ~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        328 ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            2333 3333  4678999999999887765 666999988765433222  3456789999999999999998888876 


Q ss_pred             -CCCeeeeeecCCCceeeeeee
Q 005277          577 -ASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       577 -~~~~~~~~~~~h~~~V~sl~~  597 (704)
                       .+|+.+..+.+|.+.+...+|
T Consensus       402 ~~~G~~~~~l~~~~g~~~~p~w  423 (429)
T PRK01742        402 SADGRFKARLPGSDGQVKFPAW  423 (429)
T ss_pred             ECCCCceEEccCCCCCCCCccc
Confidence             367888888888888888888

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.70  E-value=2.3e-14  Score=152.16  Aligned_cols=261  Identities=14%  Similarity=0.214  Sum_probs=169.1

Q ss_pred             EEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEe-CCCe
Q 005277          366 VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS-ADTT  444 (704)
Q Consensus       366 lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~  444 (704)
                      .++...++.|.+|++...+.                         ......+. +.+....++++|++++|++++ .++.
T Consensus         5 y~~~~~~~~I~~~~~~~~g~-------------------------l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~   58 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGA-------------------------LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFR   58 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCc-------------------------eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCc
Confidence            34446789999999863111                         11122222 335567889999999887654 5788


Q ss_pred             EEEEeCCC-Cce--eEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCC----ceeEEeccCCCCeeEEEEcCC
Q 005277          445 IRLWSTKL-NAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRI----QPLRIMAGHLSDVDCVRWHIN  516 (704)
Q Consensus       445 I~lwd~~~-~~~--~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~~~~----~~~~~~~~~~~~V~~v~~~p~  516 (704)
                      |.+|+++. +..  +.... .......++|+|+++++++++ .++.+.+|++++.    ..+..+. +.....+++++|+
T Consensus        59 i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~  136 (330)
T PRK11028         59 VLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPD  136 (330)
T ss_pred             EEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCC
Confidence            99999973 322  12222 233567899999999888876 4899999999742    2233332 3345677899999


Q ss_pred             CCEEEEEE-CCCcEEEEeCCCCcEEEE-----ee-cCCCCEEEEEEecCCCEEEEEeC-CCeEEEEeCCC--Ce--eeee
Q 005277          517 CNYIATGS-SDKTVRLWDVSSGECVRI-----FI-GHRSMILSLAMSPDGRYMASGDE-DGTIMMWDLAS--GR--CVTP  584 (704)
Q Consensus       517 ~~~l~tgs-~dg~I~iwd~~~~~~~~~-----~~-~h~~~i~~l~~spdg~~l~sg~~-dg~I~iwdl~~--~~--~~~~  584 (704)
                      ++++++++ .++.|.+||+.+...+..     .. ........++|+|+|++++++.. ++.|.+||+..  ++  .+..
T Consensus       137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~  216 (330)
T PRK11028        137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT  216 (330)
T ss_pred             CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence            99987655 569999999976332210     11 12344678999999999988876 89999999973  22  2332


Q ss_pred             ecCCCc----e--eeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCcEEEEeCCCCcc
Q 005277          585 LMGHTS----C--VWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCTVKLWDVTTSTK  657 (704)
Q Consensus       585 ~~~h~~----~--V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~~~~~  657 (704)
                      +..+..    +  ...+.+                                  +|++++++++. .+++|.+|++.....
T Consensus       217 ~~~~p~~~~~~~~~~~i~~----------------------------------~pdg~~lyv~~~~~~~I~v~~i~~~~~  262 (330)
T PRK11028        217 LDMMPADFSDTRWAADIHI----------------------------------TPDGRHLYACDRTASLISVFSVSEDGS  262 (330)
T ss_pred             EecCCCcCCCCccceeEEE----------------------------------CCCCCEEEEecCCCCeEEEEEEeCCCC
Confidence            221110    0  112333                                  89999998885 478999999976432


Q ss_pred             ccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277          658 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       658 ~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~  700 (704)
                      ..           ..+...+.. .....+.|+|+|++|+++..
T Consensus       263 ~~-----------~~~~~~~~~-~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        263 VL-----------SFEGHQPTE-TQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             eE-----------EEeEEEecc-ccCCceEECCCCCEEEEEEc
Confidence            11           112222222 23457899999999988765

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=1.5e-14  Score=143.67  Aligned_cols=235  Identities=18%  Similarity=0.284  Sum_probs=179.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (704)
                      .+..+.|+.|...|..|+.||+ ++|+......                           . .....-...|.-+-|+  
T Consensus         7 ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k---------------------------~-~~~~~~~~~IvEmLFS--   55 (391)
T KOG2110|consen    7 TINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK---------------------------C-FSKDTEGVSIVEMLFS--   55 (391)
T ss_pred             ceeeeeeccceeEEEccCCCce-eEEecCchHH---------------------------h-hcccCCCeEEEEeecc--
Confidence            4667779999999999999996 5787654211                           0 0000111234455566  


Q ss_pred             CCEEEEEeCC--CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc---CCCC
Q 005277          433 GDFILSSSAD--TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---HLSD  507 (704)
Q Consensus       433 ~~~l~s~s~D--g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~---~~~~  507 (704)
                      ..+++..+.+  ..+++.++..+..+..+. ...+|.+|.++  .+.++++-.+ .|+|||+++.+.+..+..   +...
T Consensus        56 SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~g  131 (391)
T KOG2110|consen   56 SSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKG  131 (391)
T ss_pred             cceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccc
Confidence            4555555444  348899988777776665 45689899996  4456666554 499999999988877653   4445


Q ss_pred             eeEEEEcCCCCEEEEEE--CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCe-EEEEeCCCCeeeee
Q 005277          508 VDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT-IMMWDLASGRCVTP  584 (704)
Q Consensus       508 V~~v~~~p~~~~l~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~-I~iwdl~~~~~~~~  584 (704)
                      +.++++++.+.|++.-+  ..|.|.+||+.+-+.+..+..|.+.+-+++|+++|.+||++++.|+ |+|+.+.+|+.+..
T Consensus       132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e  211 (391)
T KOG2110|consen  132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE  211 (391)
T ss_pred             eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence            66666667777998743  4689999999999999999999999999999999999999999986 79999999999999


Q ss_pred             ecCCC--ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          585 LMGHT--SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       585 ~~~h~--~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                      ++--.  ..|++++|                                  ++++.+|++.|..++|+||.+....
T Consensus       212 FRRG~~~~~IySL~F----------------------------------s~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  212 FRRGTYPVSIYSLSF----------------------------------SPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeCCceeeEEEEEEE----------------------------------CCCCCeEEEecCCCeEEEEEecccc
Confidence            86433  56778888                                  9999999999999999999998654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.6e-15  Score=142.17  Aligned_cols=205  Identities=19%  Similarity=0.343  Sum_probs=153.8

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd  491 (704)
                      ..|.+-+|+|.+++|+.|+.+|+|.+..+.+          ...+...++|.++|..++|.  ..++++|+ ||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            3567778999999999999999999998763          23456678999999999997  55666665 59999998


Q ss_pred             CCCCce-------------eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC
Q 005277          492 MDRIQP-------------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD  558 (704)
Q Consensus       492 ~~~~~~-------------~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd  558 (704)
                      .+....             .+.-...-..|+++...|..+-+++++.|+.++-||+.+|+..+.+++|++.|.++.--..
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            754221             1110112246889999998888888889999999999999999999999999999998555


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeeeecCCCcee-eeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277          559 GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV-WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL  637 (704)
Q Consensus       559 g~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V-~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  637 (704)
                      ...+.+|++||++++||+++++.+..+.....+- ..-.|.                           -.+.|...+..+
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g---------------------------~wigala~~edW  220 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG---------------------------KWIGALAVNEDW  220 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC---------------------------ceeEEEeccCce
Confidence            5568899999999999999999988875432110 000010                           001122446678


Q ss_pred             EEEEeCCCcEEEEeCCCCcc
Q 005277          638 LASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       638 lasgs~Dg~V~iWd~~~~~~  657 (704)
                      +++|+. -.+.+|++...+.
T Consensus       221 lvCGgG-p~lslwhLrsse~  239 (325)
T KOG0649|consen  221 LVCGGG-PKLSLWHLRSSES  239 (325)
T ss_pred             EEecCC-CceeEEeccCCCc
Confidence            888875 4799999998764

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.69  E-value=7.9e-17  Score=163.54  Aligned_cols=271  Identities=19%  Similarity=0.231  Sum_probs=212.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (704)
                      +-..+.++.+|+.|+.|+.-|.|-.+|+.++....                             -..-...|.++.|..+
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~-----------------------------Ei~v~Etv~Dv~~LHn  181 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF-----------------------------EINVMETVRDVTFLHN  181 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeee-----------------------------eeehhhhhhhhhhhcc
Confidence            45678899999999999999999999988632211                             1123357889999988


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEE
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~  512 (704)
                      .++++++- ...+.|||-. |..+.+++.|. .|..+.|.|..-+|++++..|.++.-|+.+++.+..+....+.+..++
T Consensus       182 eq~~AVAQ-K~y~yvYD~~-GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~  258 (545)
T KOG1272|consen  182 EQFFAVAQ-KKYVYVYDNN-GTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMK  258 (545)
T ss_pred             hHHHHhhh-hceEEEecCC-CcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhh
Confidence            88877765 5689999976 88888888664 789999999999999999999999999999999999888888999999


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCcee
Q 005277          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV  592 (704)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V  592 (704)
                      -+|-...+-+|...|+|.+|......++..+..|.++|.++++.++|+|++|.|.|..++|||+++...+.++.. .-+.
T Consensus       259 qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a  337 (545)
T KOG1272|consen  259 QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPA  337 (545)
T ss_pred             cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCc
Confidence            999989999999999999999999888888889999999999999999999999999999999998876655543 2334


Q ss_pred             eeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcccccc
Q 005277          593 WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS  672 (704)
Q Consensus       593 ~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~  672 (704)
                      ..+++                                  |..| +||.| ....|.||.=......       . .  ..
T Consensus       338 ~~ls~----------------------------------Sqkg-lLA~~-~G~~v~iw~d~~~~s~-------~-~--~~  371 (545)
T KOG1272|consen  338 SNLSL----------------------------------SQKG-LLALS-YGDHVQIWKDALKGSG-------H-G--ET  371 (545)
T ss_pred             ccccc----------------------------------cccc-ceeee-cCCeeeeehhhhcCCC-------C-C--Cc
Confidence            44444                                  4444 44444 4458999963322110       0 0  11


Q ss_pred             ccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          673 LKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       673 l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      .+--....++|..|.|.|-..+|..|-..|
T Consensus       372 pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  372 PYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             chhhhccCcccccceeccHHHeeeccccCC
Confidence            111112245899999999988888876554

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.68  E-value=5.4e-16  Score=147.07  Aligned_cols=240  Identities=19%  Similarity=0.271  Sum_probs=179.4

Q ss_pred             ceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (704)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd  491 (704)
                      ....+.+|.+.|+++.|-.+++ |++|..-|.|++|++.+......++ .|...|+.+.--|+ ..+.+-+.|+.+.+|+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT   83 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence            3455669999999999987665 8999999999999999998888888 56788999998887 4578888999999999


Q ss_pred             CCCCceeEE---------------------------e--------------------------ccCCCCeeEEEEcC-CC
Q 005277          492 MDRIQPLRI---------------------------M--------------------------AGHLSDVDCVRWHI-NC  517 (704)
Q Consensus       492 ~~~~~~~~~---------------------------~--------------------------~~~~~~V~~v~~~p-~~  517 (704)
                      +.....+..                           +                          .+..+.+.|..|.. .+
T Consensus        84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~  163 (323)
T KOG0322|consen   84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG  163 (323)
T ss_pred             ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence            864211100                           0                          01123344555432 22


Q ss_pred             --CEEEEEECCCcEEEEeCCCCcE----------EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC--eee-
Q 005277          518 --NYIATGSSDKTVRLWDVSSGEC----------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG--RCV-  582 (704)
Q Consensus       518 --~~l~tgs~dg~I~iwd~~~~~~----------~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~--~~~-  582 (704)
                        -++++|..+|.|.+||+.++..          +.....|..+|.++.+.+.-..=++|+.+..+..|++...  .+. 
T Consensus       164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI  243 (323)
T ss_pred             ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence              2456788999999999998733          3334578999999999886555578888888999988643  111 


Q ss_pred             -eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277          583 -TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT  661 (704)
Q Consensus       583 -~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~  661 (704)
                       ..+.-..-.|..+..                                  -||++++||+|.||.||||+.++..     
T Consensus       244 ~~e~~lknpGv~gvrI----------------------------------RpD~KIlATAGWD~RiRVyswrtl~-----  284 (323)
T KOG0322|consen  244 RKEITLKNPGVSGVRI----------------------------------RPDGKILATAGWDHRIRVYSWRTLN-----  284 (323)
T ss_pred             cceEEecCCCccceEE----------------------------------ccCCcEEeecccCCcEEEEEeccCC-----
Confidence             111111223444444                                  8999999999999999999998864     


Q ss_pred             ccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          662 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       662 ~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                ++..+..|...|.+|+|+|+..++|+|+.|+.
T Consensus       285 ----------pLAVLkyHsagvn~vAfspd~~lmAaaskD~r  316 (323)
T KOG0322|consen  285 ----------PLAVLKYHSAGVNAVAFSPDCELMAAASKDAR  316 (323)
T ss_pred             ----------chhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence                      47788889999999999999999999999863

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=4.6e-16  Score=160.55  Aligned_cols=237  Identities=21%  Similarity=0.263  Sum_probs=172.5

Q ss_pred             eeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-ecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEE
Q 005277          414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGHNYPVWDVQFNP--QGHYFASSSHDRTARIW  490 (704)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~-~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lw  490 (704)
                      ...+.||+|.|+|+.|+.+|.+|++||.|-.+.|||.-..+.+..+ .+|...|.++.|-|  +...+++|..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            3558899999999999999999999999999999999888887776 48999999999999  56789999999999999


Q ss_pred             ECCC----------CceeEEeccCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEE----------EEeecCCCC
Q 005277          491 SMDR----------IQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECV----------RIFIGHRSM  549 (704)
Q Consensus       491 d~~~----------~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~----------~~~~~h~~~  549 (704)
                      |++.          ..+.+.+..|...|..++-.|++ +.+.+++.||+|+-+|++.....          ..+...--.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            9984          34566777899999999999988 88999999999999999863211          111122235


Q ss_pred             EEEEEEecC-CCEEEEEeCCCeEEEEeCCCCeeeeeecC---CC----ceeeeeeeeeeehccccccccccccccceeee
Q 005277          550 ILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMG---HT----SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFY  621 (704)
Q Consensus       550 i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~~~~~~~~---h~----~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (704)
                      ..|+.++|. ..+|++|+.|-..++||.+..  +..+..   |.    ....++.+     .+.+..    ....+....
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~--lks~~s~~~~~~~pp~~~~cv~y-----f~p~hl----kn~~gn~~~  271 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRV--LKSFRSDGTMNTCPPKDCRCVRY-----FSPGHL----KNSQGNLDR  271 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhhhhh--ccCCCCCccccCCCCcccchhhe-----ecCccc----cCccccccc
Confidence            678999994 578999999999999996422  111111   11    11112221     000111    122333334


Q ss_pred             eeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277          622 SLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT  661 (704)
Q Consensus       622 ~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~  661 (704)
                      ....+....++|+|.-|.+.-..-.|+++|+..++....+
T Consensus       272 ~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  272 YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            4445556666999987666555568999999987765443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.67  E-value=3.3e-15  Score=154.30  Aligned_cols=172  Identities=19%  Similarity=0.296  Sum_probs=137.4

Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeec----CCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCC----------
Q 005277          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDR----------  494 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~----------  494 (704)
                      .|.+--|+.|-.-|.|.+.|.........+..    ....|+++.|-| +...|+.+-.+|.+.++|...          
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence            34555677888888899988765322221211    246899999999 556777888999999997641          


Q ss_pred             ------------------CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEe
Q 005277          495 ------------------IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS  556 (704)
Q Consensus       495 ------------------~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~s  556 (704)
                                        ..|+..+.-..+.|..++|+|||++||+.+.||.+||||..+.+.+..++.--+...|++||
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS  341 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence                              11222222334578889999999999999999999999999988888777777889999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeee
Q 005277          557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLL  601 (704)
Q Consensus       557 pdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~  601 (704)
                      |||+||++|++|..|.||.+..++.+..-++|.+.|..++|.+..
T Consensus       342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpyt  386 (636)
T KOG2394|consen  342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYT  386 (636)
T ss_pred             CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccc
Confidence            999999999999999999999999999999999999999997543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.1e-15  Score=154.39  Aligned_cols=197  Identities=26%  Similarity=0.352  Sum_probs=160.0

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG-  503 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~-  503 (704)
                      .+++|+++|..|++++.||++|+|++.+...+.....|...|.++.|+|||+.+++-+.| ..+||+.+++.++..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            789999999999999999999999988888888888899999999999999999999999 999999999977665542 


Q ss_pred             -CCCCeeEEEEcCCC---CEE--EEEECCCcEEEEeCCCCcE-----EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277          504 -HLSDVDCVRWHINC---NYI--ATGSSDKTVRLWDVSSGEC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (704)
Q Consensus       504 -~~~~V~~v~~~p~~---~~l--~tgs~dg~I~iwd~~~~~~-----~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~  572 (704)
                       .......+.|..++   .+.  +....-+.|+.||+...+-     .+........|++++.++||++++.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence             22346677887665   332  2333456777777643211     111222334799999999999999999999999


Q ss_pred             EEeCCCCeeeeee-cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEe
Q 005277          573 MWDLASGRCVTPL-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD  651 (704)
Q Consensus       573 iwdl~~~~~~~~~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd  651 (704)
                      |++..+.+.+... +.|...|+.+.|                                  +|+.+++++.+.|....|..
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF----------------------------------~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTF----------------------------------SPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEE----------------------------------cCCcCcccccccCCceeEEE
Confidence            9999988877766 579999999999                                  99999999999999999988


Q ss_pred             CCCCc
Q 005277          652 VTTST  656 (704)
Q Consensus       652 ~~~~~  656 (704)
                      +.-..
T Consensus       353 l~vd~  357 (398)
T KOG0771|consen  353 LAVDK  357 (398)
T ss_pred             Eeecc
Confidence            87643

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.67  E-value=1.7e-15  Score=156.06  Aligned_cols=211  Identities=16%  Similarity=0.242  Sum_probs=167.4

Q ss_pred             CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCC
Q 005277          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD  442 (704)
Q Consensus       363 g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D  442 (704)
                      ...++.+++||.+.|.+-..                             +.......|.+.|.+-.|+|||.-|++++.|
T Consensus        75 ~d~~~i~s~DGkf~il~k~~-----------------------------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GED  125 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSA-----------------------------RVERSISAHAAAISSGRWSPDGAGLLTAGED  125 (737)
T ss_pred             cceEEEEcCCceEEEecccc-----------------------------hhhhhhhhhhhhhhhcccCCCCceeeeecCC
Confidence            45688888999998887432                             3445567899999999999999999999999


Q ss_pred             CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEE
Q 005277          443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT  522 (704)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t  522 (704)
                      |.|++|+-. |-...++-....+|.|++|.|+.+-++.+- .+.+.+=.+.-...+-....|.+-|.|+.|+|..+++++
T Consensus       126 G~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~s  203 (737)
T KOG1524|consen  126 GVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIAS  203 (737)
T ss_pred             ceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceee
Confidence            999999965 333333334567899999999877666553 367777777666666777889999999999999999999


Q ss_pred             EECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeeh
Q 005277          523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLL  602 (704)
Q Consensus       523 gs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~  602 (704)
                      |+.|-..++||- .|..+..-..|..+|++++|.|+ ..++.++.. ++++           -....+.|..++|     
T Consensus       204 gGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~-----------~~p~~GSifnlsW-----  264 (737)
T KOG1524|consen  204 GGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF-----------SSPRVGSIFNLSW-----  264 (737)
T ss_pred             cCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeeee-eeee-----------cCCCccceEEEEE-----
Confidence            999999999996 56777777789999999999999 555555532 3441           1234578999999     


Q ss_pred             ccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277          603 VTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV  652 (704)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~  652 (704)
                                                   |+||..+++|+..|.|.+=.+
T Consensus       265 -----------------------------S~DGTQ~a~gt~~G~v~~A~~  285 (737)
T KOG1524|consen  265 -----------------------------SADGTQATCGTSTGQLIVAYA  285 (737)
T ss_pred             -----------------------------cCCCceeeccccCceEEEeee
Confidence                                         999999999999998776443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=1.3e-13  Score=134.50  Aligned_cols=281  Identities=15%  Similarity=0.216  Sum_probs=187.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (704)
                      ..+++|+.|...+++|..+| .+||+.+..+......                          +..-.-.+.-+-|-  .
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~--------------------------~~~~G~~~veMLfR--~   58 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ--------------------------FIDGGFKIVEMLFR--S   58 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhc--------------------------cccCchhhhhHhhh--h
Confidence            44599999999999998777 6899987633211110                          00000111112221  3


Q ss_pred             CEEE-EEeCC------CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeEEeccCC
Q 005277          434 DFIL-SSSAD------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIMAGHL  505 (704)
Q Consensus       434 ~~l~-s~s~D------g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~-~~~~~~~~~~~~  505 (704)
                      ++|+ .|+.+      ..|.|||=....++..+. ...+|.+|.+.++  .+++. ..+.|.+|... +.+.++.+....
T Consensus        59 N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~  134 (346)
T KOG2111|consen   59 NYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRS  134 (346)
T ss_pred             ceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeeccc
Confidence            3443 44333      469999966666666665 6789999999855  34444 35889999987 556666655322


Q ss_pred             --CCeeEEEEcCCCCEEEE-EECCCcEEEEeCCCCcE--EEEeecCCCCEEEEEEecCCCEEEEEeCCCe-EEEEeCCCC
Q 005277          506 --SDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGT-IMMWDLASG  579 (704)
Q Consensus       506 --~~V~~v~~~p~~~~l~t-gs~dg~I~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~-I~iwdl~~~  579 (704)
                        ..+.+++-+.+..+||. |-.-|.|+|-|+...+.  ...+..|.+.|.|++.+.+|..+||++..|+ |+|||..+|
T Consensus       135 NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g  214 (346)
T KOG2111|consen  135 NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG  214 (346)
T ss_pred             CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC
Confidence              23444443334455555 45679999999986554  4667899999999999999999999999996 899999999


Q ss_pred             eeeeeecC--CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          580 RCVTPLMG--HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       580 ~~~~~~~~--h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      .++..++-  ....|++++|                                  ||++.+||++|.-|+|+|+.+.....
T Consensus       215 ~~l~E~RRG~d~A~iy~iaF----------------------------------Sp~~s~LavsSdKgTlHiF~l~~~~~  260 (346)
T KOG2111|consen  215 TLLQELRRGVDRADIYCIAF----------------------------------SPNSSWLAVSSDKGTLHIFSLRDTEN  260 (346)
T ss_pred             cEeeeeecCCchheEEEEEe----------------------------------CCCccEEEEEcCCCeEEEEEeecCCC
Confidence            99998853  3478999999                                  99999999999999999999987543


Q ss_pred             cccc----------ccccCccccccccccCCCCcCeEEEEEccC-CcEEEEeecCCC
Q 005277          658 VLKT----------EEKSGTNRLRSLKTLPTKSTPVYSLQFSRR-NLLFAAGALSKT  703 (704)
Q Consensus       658 ~~~~----------~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~-g~~La~gs~dgt  703 (704)
                      ....          .++.-. ....+..+.-..++..-++|..+ +.+++.+. ||+
T Consensus       261 ~~~~~SSl~~~~~~lpky~~-S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~-Dgs  315 (346)
T KOG2111|consen  261 TEDESSSLSFKRLVLPKYFS-SEWSFAKFQLPQGTQCIIAFGSETNTVIAICA-DGS  315 (346)
T ss_pred             Cccccccccccccccchhcc-cceeEEEEEccCCCcEEEEecCCCCeEEEEEe-CCc
Confidence            3220          000000 00112233334667778888887 55555543 343

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=2.9e-14  Score=159.97  Aligned_cols=279  Identities=17%  Similarity=0.217  Sum_probs=190.0

Q ss_pred             EEEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277          344 FYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (704)
Q Consensus       344 ~~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (704)
                      .-.++.|...|..++.++. +.++++|+.||+|++|++......                     .+..+...++..-.+
T Consensus      1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~---------------------~~s~rS~ltys~~~s 1099 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE---------------------GGSARSELTYSPEGS 1099 (1431)
T ss_pred             eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC---------------------cceeeeeEEEeccCC
Confidence            4456778888888888765 599999999999999998763211                     012334444554668


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ce-----eEEeecC-CcCeeE-EEEcC-CC-CEEEEEeCCCeEEEEE
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLN--AN-----LVCYKGH-NYPVWD-VQFNP-QG-HYFASSSHDRTARIWS  491 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~--~~-----~~~~~~h-~~~V~~-v~~sp-~~-~~l~sgs~dg~i~lwd  491 (704)
                      ++.++...+.++.++.++.||.|++.+++..  ..     ......+ .+.+.+ -+|.. .+ ..++.+..-+.+..||
T Consensus      1100 r~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D 1179 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWD 1179 (1431)
T ss_pred             ceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEec
Confidence            8999999999999999999999999998852  11     1111222 223333 23332 23 3788888889999999


Q ss_pred             CCCCceeEEec--cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEecCC---CEEEEE
Q 005277          492 MDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDG---RYMASG  565 (704)
Q Consensus       492 ~~~~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg---~~l~sg  565 (704)
                      ++........+  ...+.|++++.+|.++++++|+..|.+.+||+|=+.++..+. ++..+|+.+..+|-.   ...+++
T Consensus      1180 ~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1180 TRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred             chhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEe
Confidence            98765554433  345789999999999999999999999999999888777654 455788888887732   455544


Q ss_pred             e--CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277          566 D--EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA  643 (704)
Q Consensus       566 ~--~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~  643 (704)
                      +  ..+.|.+|++.+|.+...+... ..+..+.+.....   .        ...   ........+++...+.++.+|+.
T Consensus      1260 ~~~~~nevs~wn~~~g~~~~vl~~s-~~~p~ls~~~Ps~---~--------~~k---p~~~~~~~~~~~~~~~~~ltggs 1324 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETGLRQTVLWAS-DGAPILSYALPSN---D--------ARK---PDSLAGISCGVCEKNGFLLTGGS 1324 (1431)
T ss_pred             cccCCCceeeeecccCcceEEEEcC-CCCcchhhhcccc---c--------CCC---CCcccceeeecccCCceeeecCC
Confidence            4  5788999999999776666533 2223333311000   0        000   00001112233445678999999


Q ss_pred             CCcEEEEeCCCCccc
Q 005277          644 DCTVKLWDVTTSTKV  658 (704)
Q Consensus       644 Dg~V~iWd~~~~~~~  658 (704)
                      |+.|+.||.......
T Consensus      1325 d~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1325 DMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ccceeeccCCCcccc
Confidence            999999999876654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=3.4e-15  Score=152.70  Aligned_cols=277  Identities=21%  Similarity=0.362  Sum_probs=203.2

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccc------cCCCC-----C---------CCCccccc
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG------LQGEN-----D---------TTPREDII  405 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~------~~~~~-----~---------~~~~~~~~  405 (704)
                      .+..|.+.|+.+.|+..|..|++|+.|..|.+||+...........      .+.+.     +         .......+
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            4678999999999999999999999999999999976543322111      00000     0         00001111


Q ss_pred             CCCCCccceeeccCCccCeEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeEEe---ecCCc---CeeEEEEcCCC-CE
Q 005277          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCY---KGHNY---PVWDVQFNPQG-HY  477 (704)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~---~V~~v~~sp~~-~~  477 (704)
                      ...+.......+..|.++|.-++.-|+..+ |++++.|+.+.-+|++.+.....+   ..+..   ...+++..|.. .+
T Consensus       217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~  296 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE  296 (559)
T ss_pred             ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence            122223335567789999999999998764 779999999999999876543322   22333   46788999955 48


Q ss_pred             EEEEeCCCeEEEEECCCCce------eEEecc------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC--CC------
Q 005277          478 FASSSHDRTARIWSMDRIQP------LRIMAG------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVS--SG------  537 (704)
Q Consensus       478 l~sgs~dg~i~lwd~~~~~~------~~~~~~------~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~--~~------  537 (704)
                      |++|+.|..+++||.+....      +..+..      ....|+|++|+.++.-+.++..|-.|+++.-.  .|      
T Consensus       297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~  376 (559)
T KOG1334|consen  297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS  376 (559)
T ss_pred             cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence            99999999999999875321      233322      23468999999888888888889899999432  22      


Q ss_pred             ----cEEE-EeecCCC--CEEEEEE-ecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccc
Q 005277          538 ----ECVR-IFIGHRS--MILSLAM-SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLK  609 (704)
Q Consensus       538 ----~~~~-~~~~h~~--~i~~l~~-spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~  609 (704)
                          ..+. +++||.+  .|.++.| -|...|+++|+.-|.|.||+-.+++.+..+.+-...|.|+.-            
T Consensus       377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEp------------  444 (559)
T KOG1334|consen  377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEP------------  444 (559)
T ss_pred             cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCC------------
Confidence                2222 3788875  4666655 567889999999999999999999999999887778999987            


Q ss_pred             cccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          610 ISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                                            +|.-.+||++|-|..|+||--.+..
T Consensus       445 ----------------------HP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  445 ----------------------HPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             ----------------------CCCCchhhccCCccceeeecCCccc
Confidence                                  8888999999999999999875544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=6.7e-14  Score=153.13  Aligned_cols=287  Identities=18%  Similarity=0.237  Sum_probs=207.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC-
Q 005277          356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD-  434 (704)
Q Consensus       356 ~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-  434 (704)
                      ...||+|+++++..+ +..|.||...+                            +.+++.+.+|..++.++.+.|... 
T Consensus        21 ~avfSnD~k~l~~~~-~~~V~VyS~~T----------------------------g~~i~~l~~~~a~l~s~~~~~~~~~   71 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCT-GNFVKVYSTAT----------------------------GECITSLEDHTAPLTSVIVLPSSEN   71 (792)
T ss_pred             ccccccCCcEEEEee-CCEEEEEecch----------------------------HhhhhhcccccCccceeeecCCCcc
Confidence            356899999887764 67899999876                            445668889999999999988654 


Q ss_pred             --EEEEEeCCCeEEEEeCCCCceeEEe-----------------------------------------------------
Q 005277          435 --FILSSSADTTIRLWSTKLNANLVCY-----------------------------------------------------  459 (704)
Q Consensus       435 --~l~s~s~Dg~I~lwd~~~~~~~~~~-----------------------------------------------------  459 (704)
                        ++++++.||+|++||...+..+.++                                                     
T Consensus        72 ~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~  151 (792)
T KOG1963|consen   72 ANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDS  151 (792)
T ss_pred             ceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccc
Confidence              6779999999999997632211100                                                     


Q ss_pred             --------------------------------------------------ecCCcCeeEEEEcCCCCEEEEEeCCCeEEE
Q 005277          460 --------------------------------------------------KGHNYPVWDVQFNPQGHYFASSSHDRTARI  489 (704)
Q Consensus       460 --------------------------------------------------~~h~~~V~~v~~sp~~~~l~sgs~dg~i~l  489 (704)
                                                                        ..|...+++.+++|.++++|+|..||.|.+
T Consensus       152 ~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~v  231 (792)
T KOG1963|consen  152 AKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILV  231 (792)
T ss_pred             cchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEE
Confidence                                                              014455788999999999999999999999


Q ss_pred             EECCC----CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277          490 WSMDR----IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (704)
Q Consensus       490 wd~~~----~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg  565 (704)
                      |.--.    ......+..|...|.+++|+++|.+|++|+..|.+.+|.+.+++ ...+..-.++|..+.+|||+.+.+..
T Consensus       232 w~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~  310 (792)
T KOG1963|consen  232 WRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLV  310 (792)
T ss_pred             EeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEE
Confidence            96432    23456677899999999999999999999999999999999998 34455567899999999999999999


Q ss_pred             eCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277          566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC  645 (704)
Q Consensus       566 ~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg  645 (704)
                      ..|+.|.+....+.....++.+-..+-.+..-+                       ........|++|..+.++-.+..|
T Consensus       311 ~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~-----------------------~~~l~t~~~idpr~~~~vln~~~g  367 (792)
T KOG1963|consen  311 LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTR-----------------------PQSLTTGVSIDPRTNSLVLNGHPG  367 (792)
T ss_pred             ecCceEEEEeccchhhhhhccCccCCCcccccc-----------------------ccccceeEEEcCCCCceeecCCCc
Confidence            999999999887665555554332221110000                       000011122277677888888999


Q ss_pred             cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          646 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       646 ~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                      .|.+||+.+...+.++.-....    ....-..+.-+|+++.++..|.+++++-
T Consensus       368 ~vQ~ydl~td~~i~~~~v~~~n----~~~~~~n~~v~itav~~~~~gs~maT~E  417 (792)
T KOG1963|consen  368 HVQFYDLYTDSTIYKLQVCDEN----YSDGDVNIQVGITAVARSRFGSWMATLE  417 (792)
T ss_pred             eEEEEeccccceeeeEEEEeec----ccCCcceeEEeeeeehhhccceEEEEee
Confidence            9999999988766443211000    0000002344678888888899988864

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.63  E-value=2.4e-14  Score=140.59  Aligned_cols=309  Identities=20%  Similarity=0.279  Sum_probs=199.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC---------
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH---------  420 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---------  420 (704)
                      ..+-|.++.|...|.+||+|..+|.|.++.-.....                       +.......++.|         
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-----------------------~ey~~~t~fqshepEFDYLkS   80 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-----------------------GEYNFQTEFQSHEPEFDYLKS   80 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccc-----------------------cceeeeeeeeccCcccchhhh
Confidence            345689999999999999999999999997543211                       001122222223         


Q ss_pred             ---ccCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCce-----------------------------------eEEe-
Q 005277          421 ---SGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNAN-----------------------------------LVCY-  459 (704)
Q Consensus       421 ---~~~V~~l~~sp~~~--~l~s~s~Dg~I~lwd~~~~~~-----------------------------------~~~~-  459 (704)
                         ...|..+.|.++++  .++..+.|.+|++|.+.....                                   .+.+ 
T Consensus        81 leieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~a  160 (433)
T KOG1354|consen   81 LEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYA  160 (433)
T ss_pred             hhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecc
Confidence               35788999998775  566777899999998753211                                   0111 


Q ss_pred             ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---EEeccC-----CCCeeEEEEcCC-CCEEEEEECCCcEE
Q 005277          460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL---RIMAGH-----LSDVDCVRWHIN-CNYIATGSSDKTVR  530 (704)
Q Consensus       460 ~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~---~~~~~~-----~~~V~~v~~~p~-~~~l~tgs~dg~I~  530 (704)
                      ..|+..|.+|.++.|+..++++ .|=.|.+|+++-....   .-++.+     ..-|++..|||. ++.++..++.|+|+
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            2588899999999999988887 4678999998743322   222222     235788999995 78888999999999


Q ss_pred             EEeCCCCcEE----EEe------------ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC-CCCeeeeeecCCCceee
Q 005277          531 LWDVSSGECV----RIF------------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL-ASGRCVTPLMGHTSCVW  593 (704)
Q Consensus       531 iwd~~~~~~~----~~~------------~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl-~~~~~~~~~~~h~~~V~  593 (704)
                      +.|+|.....    ..|            .+--..|..+.|+++|+++++-+. -+|++||+ ...+++.+++.|..--.
T Consensus       240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~  318 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRS  318 (433)
T ss_pred             EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHH
Confidence            9999843211    111            122246889999999999988654 48999999 45677777776642111


Q ss_pred             eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccccc-------C
Q 005277          594 TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS-------G  666 (704)
Q Consensus       594 sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~-------~  666 (704)
                      .+.-      .             +-..+.-.-+-+|++.++.+++|||..+.++++++..+.......+.+       .
T Consensus       319 kLc~------l-------------YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~  379 (433)
T KOG1354|consen  319 KLCS------L-------------YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRK  379 (433)
T ss_pred             HHHH------H-------------hhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccc
Confidence            1100      0             000001111234458888999999999999999977665432221100       0


Q ss_pred             cccccccccc------------CCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          667 TNRLRSLKTL------------PTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       667 ~~~~~~l~~~------------~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      ...++.+..-            -.....+...+|+|....+|++..++
T Consensus       380 ~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn  427 (433)
T KOG1354|consen  380 VLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNN  427 (433)
T ss_pred             cccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCc
Confidence            0001111100            01233467789999999999987654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.1e-14  Score=143.00  Aligned_cols=193  Identities=21%  Similarity=0.327  Sum_probs=155.8

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEEECCCCcee--EEeccCC-CCe
Q 005277          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPL--RIMAGHL-SDV  508 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lwd~~~~~~~--~~~~~~~-~~V  508 (704)
                      ..++++...|+|++||..+++.+..++++...+..+.|..  ..+.+.+|+.||+|++||++.....  ..+..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4578888899999999999999999999999999999987  5678999999999999999876543  3344444 467


Q ss_pred             eEEEEcCCCCEEEEEE----CCCcEEEEeCCCCcE-EEEe-ecCCCCEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCe-
Q 005277          509 DCVRWHINCNYIATGS----SDKTVRLWDVSSGEC-VRIF-IGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGR-  580 (704)
Q Consensus       509 ~~v~~~p~~~~l~tgs----~dg~I~iwd~~~~~~-~~~~-~~h~~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~~-  580 (704)
                      .|++..-+++.+++|+    .+-.|.+||+|..+. ++.+ ..|...|++++|+| +.+.|++|+.||.|.+||+.... 
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            7777766888999986    467899999998765 5544 47999999999999 56799999999999999987542 


Q ss_pred             --eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC-CEEEEEeCCCcEEEEeCCCCcc
Q 005277          581 --CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG-SLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       581 --~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                        .+...-.|...|..+.|                                  ..++ +.|.+-+..++..+|+++.+..
T Consensus       201 eDaL~~viN~~sSI~~igw----------------------------------~~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGW----------------------------------LSKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             hhhHHHhhcccceeeeeee----------------------------------ecCCcceEEEEEccCceeEEEccCCCh
Confidence              22233457788999999                                  4443 5688889999999999998875


Q ss_pred             ccc
Q 005277          658 VLK  660 (704)
Q Consensus       658 ~~~  660 (704)
                      ...
T Consensus       247 ~~~  249 (376)
T KOG1188|consen  247 ETW  249 (376)
T ss_pred             hhc
Confidence            433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=3.3e-15  Score=154.31  Aligned_cols=207  Identities=27%  Similarity=0.480  Sum_probs=158.8

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      +.+|.+-|+|++|+.||.+||+|+.|-.+.|||.-..                           +.....-.||...|.+
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---------------------------KllhsI~TgHtaNIFs   98 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---------------------------KLLHSISTGHTANIFS   98 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecchhc---------------------------ceeeeeecccccceeE
Confidence            6799999999999999999999999999999997531                           2233455789999999


Q ss_pred             EEEcCC--CCEEEEEeCCCeEEEEeCCC----------CceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECC
Q 005277          427 ASFSPL--GDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMD  493 (704)
Q Consensus       427 l~~sp~--~~~l~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~  493 (704)
                      +.|-|.  ++.+++|+.|..|+++|+..          ......+..|...|..|+..|++ +.|++++.||+++-+|++
T Consensus        99 vKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR  178 (758)
T KOG1310|consen   99 VKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR  178 (758)
T ss_pred             EeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence            999984  56888999999999999984          23355677899999999999988 889999999999999998


Q ss_pred             CCcee----------EEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCC--------C----------cEEEEee
Q 005277          494 RIQPL----------RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSS--------G----------ECVRIFI  544 (704)
Q Consensus       494 ~~~~~----------~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~--------~----------~~~~~~~  544 (704)
                      .....          ..+....-...|+..+|. ..+|++|+.|-..++||.+.        +          .|++.|.
T Consensus       179 Eph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~  258 (758)
T KOG1310|consen  179 EPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS  258 (758)
T ss_pred             CCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec
Confidence            63211          111222234678888884 67899999999999999531        1          1344332


Q ss_pred             -cCC----C-------CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          545 -GHR----S-------MILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       545 -~h~----~-------~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                       +|-    +       .++-+.|+|+|.-|.+.-..-.|+++|+..++
T Consensus       259 p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  259 PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             CccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence             222    1       25668899999876665555689999987653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=2e-14  Score=158.70  Aligned_cols=251  Identities=17%  Similarity=0.243  Sum_probs=179.1

Q ss_pred             CCEEEEEEcC--CCCEEEEEeCCCcEEEEEcccCC--ccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          352 NGLNCASISQ--DGSLVAGGFSDSSLKVWDMAKLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       352 ~~V~~~~fs~--dg~~lasg~~dg~I~iwdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      ..|+.+.+-.  |..++.+|+.||.|+||+--...  .........+                  ....+.+..+.=.-+
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~------------------Ls~~~~~~r~~~~v~ 1171 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSS------------------LSDQLPGARGTGLVV 1171 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecc------------------ccccCccCCCCCeee
Confidence            3577777754  57799999999999999743211  0000000000                  000011111222456


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec-CCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCc---eeEEec
Q 005277          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ---PLRIMA  502 (704)
Q Consensus       428 ~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~---~~~~~~  502 (704)
                      .|.....+|++++.-..|+|||......+..+.. ....|+++.-+- .|+.++.|..||.|++||.+...   .+...+
T Consensus      1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred             ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence            7888777888888788999999998777766653 345577665544 57999999999999999997543   567778


Q ss_pred             cCCCC--eeEEEEcCCCCE-EEEEECCCcEEEEeCCCCcEEE--EeecCC--C-CEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277          503 GHLSD--VDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVR--IFIGHR--S-MILSLAMSPDGRYMASGDEDGTIMMW  574 (704)
Q Consensus       503 ~~~~~--V~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~--~~~~h~--~-~i~~l~~spdg~~l~sg~~dg~I~iw  574 (704)
                      .|...  |..+.+.++|-- |++|+.+|.|++||+|......  ....|.  + ..+++..+++...+|+|+. +.|.||
T Consensus      1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred             ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEE
Confidence            88887  999999987654 9999999999999999742222  222333  3 5999999999999999998 999999


Q ss_pred             eCCCCeeeeeecC-------CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcE
Q 005277          575 DLASGRCVTPLMG-------HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV  647 (704)
Q Consensus       575 dl~~~~~~~~~~~-------h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V  647 (704)
                      ++. |+.+..++.       ..+.+.++.|                                  +|..-++|+|+.|.+|
T Consensus      1331 ~~~-G~~l~~~k~n~~F~~q~~gs~scL~F----------------------------------HP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1331 SLS-GEQLNIIKYNPGFMGQRIGSVSCLAF----------------------------------HPHRLLLAAGSADSTV 1375 (1387)
T ss_pred             ecC-hhhhcccccCcccccCcCCCcceeee----------------------------------cchhHhhhhccCCceE
Confidence            975 444433332       2256677887                                  8999999999999999


Q ss_pred             EEEeCCCCc
Q 005277          648 KLWDVTTST  656 (704)
Q Consensus       648 ~iWd~~~~~  656 (704)
                      .||....+.
T Consensus      1376 ~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1376 SIYSCEKPR 1384 (1387)
T ss_pred             EEeecCCcC
Confidence            999987653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.62  E-value=1e-15  Score=155.51  Aligned_cols=220  Identities=19%  Similarity=0.266  Sum_probs=191.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~  502 (704)
                      .-+.+.++.+|++|+.|+..|.|-.+|+.+++....+. -...|.++.|..+.++||++ ....++|||-. +..+..+.
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHClk  207 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCLK  207 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeehh
Confidence            34789999999999999999999999999998877776 35579999999888888877 55889999965 45566666


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~  582 (704)
                      .| ..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+|...|+|.+|...+..++
T Consensus       208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL  286 (545)
T KOG1272|consen  208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL  286 (545)
T ss_pred             hc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence            44 67899999999999999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccc
Q 005277          583 TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE  662 (704)
Q Consensus       583 ~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~  662 (704)
                      ..+..|.++|.++++                                  .++|+++||.|.|..|+|||+..-..     
T Consensus       287 vKiLcH~g~V~siAv----------------------------------~~~G~YMaTtG~Dr~~kIWDlR~~~q-----  327 (545)
T KOG1272|consen  287 VKILCHRGPVSSIAV----------------------------------DRGGRYMATTGLDRKVKIWDLRNFYQ-----  327 (545)
T ss_pred             HHHHhcCCCcceEEE----------------------------------CCCCcEEeecccccceeEeeeccccc-----
Confidence            999999999999999                                  99999999999999999999988543     


Q ss_pred             cccCccccccccccCCCCcCeEEEEEccCCcEEE
Q 005277          663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA  696 (704)
Q Consensus       663 ~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La  696 (704)
                                +.++.+ ..+...++||..|.+.+
T Consensus       328 ----------l~t~~t-p~~a~~ls~SqkglLA~  350 (545)
T KOG1272|consen  328 ----------LHTYRT-PHPASNLSLSQKGLLAL  350 (545)
T ss_pred             ----------cceeec-CCCccccccccccceee
Confidence                      334434 56788899998886443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.62  E-value=2.1e-14  Score=150.49  Aligned_cols=196  Identities=20%  Similarity=0.287  Sum_probs=148.7

Q ss_pred             EcCCCCEEEE--EeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC-CCCE
Q 005277          359 ISQDGSLVAG--GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP-LGDF  435 (704)
Q Consensus       359 fs~dg~~las--g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~  435 (704)
                      |+.+...+|+  .+.-|.|-||+++..+...-                    +.  .-..+  ....|+.+.|.| |...
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPD--------------------gv--~p~l~--Ngt~vtDl~WdPFD~~r  642 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPD--------------------GV--MPGLF--NGTLVTDLHWDPFDDER  642 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCc--------------------cc--ccccc--cCceeeecccCCCChHH
Confidence            3344555554  34578999999986432210                    00  00111  235689999999 5568


Q ss_pred             EEEEeCCCeEEEEeCCCC-------ceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC
Q 005277          436 ILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD  507 (704)
Q Consensus       436 l~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~  507 (704)
                      |+.++.||.|++|.+..+       ..-..+..|...|+++.|+| -...+++++.|-+|++||+.+......+.+|.+.
T Consensus       643 LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdq  722 (1012)
T KOG1445|consen  643 LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQ  722 (1012)
T ss_pred             eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCc
Confidence            999999999999998754       34566788999999999999 5678999999999999999999999999999999


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-EEEEeecCC-CCEEEEEEecCCCEEEEEeCC----CeEEEEeCCC
Q 005277          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHR-SMILSLAMSPDGRYMASGDED----GTIMMWDLAS  578 (704)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~-~~i~~l~~spdg~~l~sg~~d----g~I~iwdl~~  578 (704)
                      |..++|+|+|+.+++.+.||+|++|..+++. .++.-.+.. ..--.+.|.-+|+++++.+.|    ..|.+||..+
T Consensus       723 If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  723 IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence            9999999999999999999999999998764 333322211 223457788899999887765    4677887654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=3.9e-13  Score=147.32  Aligned_cols=219  Identities=17%  Similarity=0.150  Sum_probs=151.3

Q ss_pred             cCCccCeEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE-eCCC--eEEEEE
Q 005277          418 QGHSGPVYSASFSPLGDFILSSS---ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDR--TARIWS  491 (704)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~l~s~s---~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg-s~dg--~i~lwd  491 (704)
                      ..+...+.+.+|+|||+.|+..+   .+..|.+|++.+++... +......+....|+|+|+.++.. +.+|  .|.+||
T Consensus       195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d  273 (429)
T PRK03629        195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  273 (429)
T ss_pred             ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            34567899999999999888553   34579999998775432 22233345578999999988765 4444  588999


Q ss_pred             CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECC-Cc--EEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC
Q 005277          492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-KT--VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (704)
Q Consensus       492 ~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g~--I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d  568 (704)
                      ++++...+... +...+....|+|+|+.|+..+.+ +.  |+++|+.++...+ +..+.....+..|+|||++|+..+.+
T Consensus       274 ~~tg~~~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~SpDG~~Ia~~~~~  351 (429)
T PRK03629        274 LASGQIRQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSSN  351 (429)
T ss_pred             CCCCCEEEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEEcc
Confidence            98876655443 44567889999999999877654 44  5555776665443 33444556778999999999876543


Q ss_pred             ---CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277          569 ---GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC  645 (704)
Q Consensus       569 ---g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg  645 (704)
                         ..|.+||+.++... .+... ....+..|                                  +|||++|+.++.++
T Consensus       352 ~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~----------------------------------SpDG~~i~~~s~~~  395 (429)
T PRK03629        352 GGQQHIAKQDLATGGVQ-VLTDT-FLDETPSI----------------------------------APNGTMVIYSSSQG  395 (429)
T ss_pred             CCCceEEEEECCCCCeE-EeCCC-CCCCCceE----------------------------------CCCCCEEEEEEcCC
Confidence               35888999887643 23221 12234566                                  99999999988876


Q ss_pred             c---EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccC
Q 005277          646 T---VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR  691 (704)
Q Consensus       646 ~---V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~  691 (704)
                      .   +.+|++....                ...+.++.+.+...+|+|-
T Consensus       396 ~~~~l~~~~~~G~~----------------~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        396 MGSVLNLVSTDGRF----------------KARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CceEEEEEECCCCC----------------eEECccCCCCcCCcccCCC
Confidence            4   6777775432                2345566777888888873

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.61  E-value=1.6e-13  Score=136.38  Aligned_cols=228  Identities=17%  Similarity=0.257  Sum_probs=173.2

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC--CeEEEEECCCCceeE
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD--RTARIWSMDRIQPLR  499 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d--g~i~lwd~~~~~~~~  499 (704)
                      ..+..+.|+.+...|..|+.|| .++++................|..+-|+  ..++|..+.+  +.++++++.....+.
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~IC   82 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTIC   82 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEE
Confidence            4567777999888898999997 7888887655533333334456666676  4455555543  459999998877776


Q ss_pred             EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec---CCCCEEEEEEecCCCEEEEE--eCCCeEEEE
Q 005277          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASG--DEDGTIMMW  574 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~i~~l~~spdg~~l~sg--~~dg~I~iw  574 (704)
                      .+. ....|.+|.++.  +.|++.-.+ .|+|||+++.+.+.++..   +...+.++.+++.+.+|+.-  ...|.|.+|
T Consensus        83 e~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   83 EIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             EEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence            655 456888998854  456666544 499999999998887653   44457777777777788863  356899999


Q ss_pred             eCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc-EEEEeCC
Q 005277          575 DLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT-VKLWDVT  653 (704)
Q Consensus       575 dl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~-V~iWd~~  653 (704)
                      |+.+-+.+..+..|.+++-+++|                                  +++|.+|||+|..|+ |||+.+.
T Consensus       159 d~~nl~~v~~I~aH~~~lAalaf----------------------------------s~~G~llATASeKGTVIRVf~v~  204 (391)
T KOG2110|consen  159 DTINLQPVNTINAHKGPLAALAF----------------------------------SPDGTLLATASEKGTVIRVFSVP  204 (391)
T ss_pred             EcccceeeeEEEecCCceeEEEE----------------------------------CCCCCEEEEeccCceEEEEEEcC
Confidence            99999999999999999999999                                  999999999999996 7999999


Q ss_pred             CCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          654 TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      +++++.++..             ......|++++|+|++++|++.+..+|
T Consensus       205 ~G~kl~eFRR-------------G~~~~~IySL~Fs~ds~~L~~sS~TeT  241 (391)
T KOG2110|consen  205 EGQKLYEFRR-------------GTYPVSIYSLSFSPDSQFLAASSNTET  241 (391)
T ss_pred             CccEeeeeeC-------------CceeeEEEEEEECCCCCeEEEecCCCe
Confidence            9876533211             122456999999999999999998775

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=2.2e-13  Score=134.87  Aligned_cols=192  Identities=19%  Similarity=0.316  Sum_probs=141.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (704)
                      .+.-++|++.-..+|++..|-.|+||+-+...                            ....-......|+|++|-|.
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~ksst~----------------------------pt~Lks~sQrnvtclawRPl  151 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC----------------------------PTKLKSVSQRNVTCLAWRPL  151 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCCCC----------------------------CceecchhhcceeEEEeccC
Confidence            46778899987788999999999999865410                            00111123467999999997


Q ss_pred             CC-EEEEEeCCCeEEEEeCCCCc--------------eeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCc
Q 005277          433 GD-FILSSSADTTIRLWSTKLNA--------------NLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQ  496 (704)
Q Consensus       433 ~~-~l~s~s~Dg~I~lwd~~~~~--------------~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~~~~~  496 (704)
                      +. -|+.|+.. -|.+|......              .+....+| .+|++++|.+||..+++++ .|..|.|||.+++.
T Consensus       152 saselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~  229 (445)
T KOG2139|consen  152 SASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ  229 (445)
T ss_pred             Ccceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence            64 56677765 59999865321              12334456 6899999999999999998 56889999999988


Q ss_pred             eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (704)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwd  575 (704)
                      .+.......+.+.-+.|+|++.+|++++-|+..++|... +..+.+... ..+.|...+|+|+|++|...+. |.-++|.
T Consensus       230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lys  307 (445)
T KOG2139|consen  230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYS  307 (445)
T ss_pred             cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEE
Confidence            777765667889999999999999999999999999554 333444333 3458999999999998765443 2334454


Q ss_pred             C
Q 005277          576 L  576 (704)
Q Consensus       576 l  576 (704)
                      +
T Consensus       308 l  308 (445)
T KOG2139|consen  308 L  308 (445)
T ss_pred             E
Confidence            4

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.1e-13  Score=136.83  Aligned_cols=240  Identities=16%  Similarity=0.194  Sum_probs=167.7

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec-CCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCC----
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI----  495 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~----  495 (704)
                      ..+..++|++.-..++++..|-+|++|+-.. ++...++. ....|++++|-|. +..|++|+. +-|.+|..+..    
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence            4578899998766788999999999999886 55444543 3567999999994 566777776 55899987531    


Q ss_pred             ce----------eEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277          496 QP----------LRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       496 ~~----------~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s  564 (704)
                      ..          +....+| .+|++++|.+||..+++++ .|..|.|||..++..+.......+.++-+.|||||.+|.+
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence            11          1222344 6899999999999999987 4678999999999888766556678999999999999999


Q ss_pred             EeCCCeEEEEeCC-CCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277          565 GDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA  643 (704)
Q Consensus       565 g~~dg~I~iwdl~-~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~  643 (704)
                      +.-|+..++|... +.....-.. -.+.|....|                                  +|+|++|.-...
T Consensus       256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacW----------------------------------spcGsfLLf~~s  300 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACW----------------------------------SPCGSFLLFACS  300 (445)
T ss_pred             ecccceeeeehhcccceecceec-cCCceeeeee----------------------------------cCCCCEEEEEEc
Confidence            9999999999654 333333222 3347777777                                  999987654432


Q ss_pred             CCcEEEEeCCCCccccccccccCcccccccc-----ccCC----CCcCeEEEEEccCCcEEEEeec
Q 005277          644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLK-----TLPT----KSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       644 Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~-----~~~~----~~~~V~~l~fs~~g~~La~gs~  700 (704)
                       |.-++|.+.-..+........+......+.     +..+    -.+++.+++|.|.|.+||+.-.
T Consensus       301 -gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  301 -GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             -CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence             445566655443332222111111111111     1112    2678999999999999998643

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.59  E-value=1.3e-15  Score=164.14  Aligned_cols=234  Identities=21%  Similarity=0.415  Sum_probs=185.0

Q ss_pred             cceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277          412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (704)
Q Consensus       412 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd  491 (704)
                      +.++.+.||...|+|+.|...|.++++|+.|..|+||++++..++...+||.+.|++++.+.++.++++++.|..|++|.
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE-----eecCCCCEEEEEEecCCCEEEEEe
Q 005277          492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-----FIGHRSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       492 ~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-----~~~h~~~i~~l~~spdg~~l~sg~  566 (704)
                      +..+.++..+.+|.+.|++++|+|-.    +.+.||++++||.+-...+..     + .....+.++.|..+|.-+++|+
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~-~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKF-TEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCc-ccccceeeeecccccccccccc
Confidence            99999999999999999999999964    677899999999882111111     1 1234577788888888899999


Q ss_pred             CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT  646 (704)
Q Consensus       567 ~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~  646 (704)
                      .|+.-..|.+....      .+...+.-+..                                 .+....+.+++-.+..
T Consensus       336 ~d~ea~n~e~~~l~------~~~~~lif~t~---------------------------------ssd~~~~~~~ar~~~~  376 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLA------WRSNLLIFVTR---------------------------------SSDLSSIVVTARNDHR  376 (1113)
T ss_pred             CCcccccchhhHhh------hhccceEEEec---------------------------------cccccccceeeeeeeE
Confidence            99988888764321      12211111111                                 0222356777778889


Q ss_pred             EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEE-EeecCCCC
Q 005277          647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA-AGALSKTS  704 (704)
Q Consensus       647 V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La-~gs~dgt~  704 (704)
                      +++|++.++..               +..+.+|..+++.+.|+|.+..++ ++++||.+
T Consensus       377 ~~vwnl~~g~l---------------~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst  420 (1113)
T KOG0644|consen  377 LCVWNLYTGQL---------------LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST  420 (1113)
T ss_pred             eeeeecccchh---------------hhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence            99999988753               445667888999999999775544 56667653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.59  E-value=2.4e-14  Score=148.02  Aligned_cols=174  Identities=22%  Similarity=0.372  Sum_probs=135.2

Q ss_pred             cCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC-EEEE
Q 005277          360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD-FILS  438 (704)
Q Consensus       360 s~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s  438 (704)
                      .|++--|..|...|.|.+.|.....-..   .             +        .....--+..|+|+.|-|.+. .++.
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sk---l-------------f--------ne~r~i~ktsvT~ikWvpg~~~~Fl~  237 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSK---L-------------F--------NEERLINKSSVTCIKWVPGSDSLFLV  237 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHH---h-------------h--------hhcccccccceEEEEEEeCCCceEEE
Confidence            3567778899999999988854310000   0             0        000001237899999999665 5567


Q ss_pred             EeCCCeEEEEeCCCC--------------c--------------eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 005277          439 SSADTTIRLWSTKLN--------------A--------------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW  490 (704)
Q Consensus       439 ~s~Dg~I~lwd~~~~--------------~--------------~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lw  490 (704)
                      +-.+|.+.++|....              .              .+..+.-..+.|..++|+|||++||+.+.||.+|||
T Consensus       238 a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF  317 (636)
T KOG2394|consen  238 AHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIF  317 (636)
T ss_pred             EEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEe
Confidence            778999999975411              0              111111224578889999999999999999999999


Q ss_pred             ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec
Q 005277          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP  557 (704)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp  557 (704)
                      |.++.+.+..++..-+...|++|+|||+||++|+.|.-|.||.+..++.+..-.+|+.+|+.++|.|
T Consensus       318 ~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  318 DFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            9999888888888888999999999999999999999999999999999999999999999999983

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=6.5e-13  Score=145.56  Aligned_cols=217  Identities=15%  Similarity=0.117  Sum_probs=150.6

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~---dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      +..+...+.+.+|||||+.||..+.   +..|.+|++.+...                          .....+.   +.
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--------------------------~~l~~~~---~~  244 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------------------------RQVASFP---RH  244 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--------------------------EEccCCC---CC
Confidence            3455668999999999999987643   35688888765211                          1111222   33


Q ss_pred             eEEEEEcCCCCEEEEE-eCCC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC-Ce--EEEEECCCCce
Q 005277          424 VYSASFSPLGDFILSS-SADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-RT--ARIWSMDRIQP  497 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~-s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d-g~--i~lwd~~~~~~  497 (704)
                      +....|+|||+.|+.. +.+|  .|.+||+.++.... +..+...+....|+|+|+.++..+.+ +.  |.++|+.++..
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            4468999999988754 4455  58889998776544 34445567889999999988777653 44  44456666654


Q ss_pred             eEEeccCCCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCe---E
Q 005277          498 LRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT---I  571 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~---I  571 (704)
                      .+ +..+.....+..|+|+|++|+..+.+   ..|.+||+.++.... +... .......|+|||++|+.++.++.   +
T Consensus       324 ~~-lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l  400 (429)
T PRK03629        324 QR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL  400 (429)
T ss_pred             EE-eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence            33 33344456678999999999886643   358899998887543 3322 23456789999999999887764   6


Q ss_pred             EEEeCCCCeeeeeecCCCceeeeeee
Q 005277          572 MMWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       572 ~iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      .++++ +|+....+.+|.+.+...+|
T Consensus       401 ~~~~~-~G~~~~~l~~~~~~~~~p~W  425 (429)
T PRK03629        401 NLVST-DGRFKARLPATDGQVKFPAW  425 (429)
T ss_pred             EEEEC-CCCCeEECccCCCCcCCccc
Confidence            77777 56666777788888888888

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.58  E-value=3.4e-13  Score=151.54  Aligned_cols=220  Identities=17%  Similarity=0.230  Sum_probs=161.6

Q ss_pred             CccceeeccCCccCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC-------ceeEEeecCCcCeeEEEEcCCCCEEEEE
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQGHYFASS  481 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~v~~sp~~~~l~sg  481 (704)
                      ++..+..+..|+..|..++.++.. .+++|||.||+|++|+.+.-       +...++.....++.++.+.+.+..||++
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            355677788999999999988766 89999999999999997632       2344555567889999999999999999


Q ss_pred             eCCCeEEEEECCCC--c-----eeEEeccCCC-C-eeEEEEcC-CC-CEEEEEECCCcEEEEeCCCCcEEEEee--cCCC
Q 005277          482 SHDRTARIWSMDRI--Q-----PLRIMAGHLS-D-VDCVRWHI-NC-NYIATGSSDKTVRLWDVSSGECVRIFI--GHRS  548 (704)
Q Consensus       482 s~dg~i~lwd~~~~--~-----~~~~~~~~~~-~-V~~v~~~p-~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~  548 (704)
                      +.||.|++.+++..  .     ..+....+.. . |.+-+|.. .+ ..++.+..-+.|..||+++.......+  ...+
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            99999999999862  1     2222222222 2 23333332 23 377888889999999999876555443  3457


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec-CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY  627 (704)
Q Consensus       549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~-~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (704)
                      .|++++.+|.+.++++|+..|.+.+||++-+.++..+. ++..++..+..++                            
T Consensus      1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~---------------------------- 1248 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP---------------------------- 1248 (1431)
T ss_pred             ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec----------------------------
Confidence            89999999999999999999999999999888887764 3446666655421                            


Q ss_pred             ecccCCCCCEEEEEe--CCCcEEEEeCCCCccccc
Q 005277          628 FGCASCEGSLLASGS--ADCTVKLWDVTTSTKVLK  660 (704)
Q Consensus       628 ~~~~s~~g~~lasgs--~Dg~V~iWd~~~~~~~~~  660 (704)
                         +.+.....++++  ..+-|.+|++.++.....
T Consensus      1249 ---~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~v 1280 (1431)
T KOG1240|consen 1249 ---TYPQESVSVSAGSSSNNEVSTWNMETGLRQTV 1280 (1431)
T ss_pred             ---cCCCCceEEEecccCCCceeeeecccCcceEE
Confidence               134334554444  578899999999865433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=4.9e-13  Score=147.06  Aligned_cols=199  Identities=18%  Similarity=0.179  Sum_probs=139.8

Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEE-EEeCCC--eEEEE
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDR--TARIW  490 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-sgs~dg--~i~lw  490 (704)
                      +..|...+.+.+|+||++.|+.++.   +..|.+||+.++.... +..+.+...+..|+|+|+.++ +.+.+|  .|++|
T Consensus       199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~  277 (433)
T PRK04922        199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVM  277 (433)
T ss_pred             eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEE
Confidence            4456678999999999999887763   3469999998776533 333444556789999998775 445555  59999


Q ss_pred             ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-CCc--EEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKT--VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~--I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      |+.+++.. .+..+.......+|+|+|++|+.++. +|.  |+++|+.+++..+.. .+.......+|+|||++|+..+.
T Consensus       278 d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~  355 (433)
T PRK04922        278 DLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVHG  355 (433)
T ss_pred             ECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEEC
Confidence            99887644 44455555677899999999887764 444  777787777654432 33344557899999999987654


Q ss_pred             CC---eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277          568 DG---TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD  644 (704)
Q Consensus       568 dg---~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D  644 (704)
                      ++   .|.+||+.+++.. .+. +........|                                  +|+|++|+..+.+
T Consensus       356 ~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~----------------------------------spdG~~i~~~s~~  399 (433)
T PRK04922        356 SGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSF----------------------------------APNGSMVLYATRE  399 (433)
T ss_pred             CCCceeEEEEECCCCCeE-ECC-CCCCCCCceE----------------------------------CCCCCEEEEEEec
Confidence            43   6999999887654 332 2223445567                                  9999988776653


Q ss_pred             ---CcEEEEeCCC
Q 005277          645 ---CTVKLWDVTT  654 (704)
Q Consensus       645 ---g~V~iWd~~~  654 (704)
                         +.|.+|++..
T Consensus       400 ~g~~~L~~~~~~g  412 (433)
T PRK04922        400 GGRGVLAAVSTDG  412 (433)
T ss_pred             CCceEEEEEECCC
Confidence               3577777754

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.58  E-value=7.7e-13  Score=129.33  Aligned_cols=269  Identities=17%  Similarity=0.279  Sum_probs=187.4

Q ss_pred             CCEEEEEEcCCCCEEEE-EeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          352 NGLNCASISQDGSLVAG-GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       352 ~~V~~~~fs~dg~~las-g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      +.|.-+.|..|..++++ ...++.|.+|++..                            ..-.........++.+++||
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Q----------------------------pew~ckIdeg~agls~~~WS  100 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ----------------------------PEWYCKIDEGQAGLSSISWS  100 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeec----------------------------ceeEEEeccCCCcceeeeEC
Confidence            45667788888666555 46688999999875                            22334455567889999999


Q ss_pred             CCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC--------------------------
Q 005277          431 PLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH--------------------------  483 (704)
Q Consensus       431 p~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~--------------------------  483 (704)
                      |||+.++ ++.-|-.|.+|++.+.+.... +-....+..++|+|+|++.+.++.                          
T Consensus       101 PdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~  179 (447)
T KOG4497|consen  101 PDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTI  179 (447)
T ss_pred             CCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcc
Confidence            9997554 777899999999997665432 222345688999999998887753                          


Q ss_pred             ----------CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE------------
Q 005277          484 ----------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR------------  541 (704)
Q Consensus       484 ----------dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~------------  541 (704)
                                +..+.+||.--...+..+. ..-.+..++|+|.+++|++|+.|+.+|+.+--+-+...            
T Consensus       180 DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~  258 (447)
T KOG4497|consen  180 DLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPT  258 (447)
T ss_pred             cccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCch
Confidence                      2334455432222222222 22468889999999999999999998885432111000            


Q ss_pred             ------------------------------------------------Ee------ecCCCCEEEEEEecCCCEEEEEeC
Q 005277          542 ------------------------------------------------IF------IGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       542 ------------------------------------------------~~------~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                                                                      ..      ......+.-++|++|..++++-.+
T Consensus       259 ~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd  338 (447)
T KOG4497|consen  259 LHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND  338 (447)
T ss_pred             hhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC
Confidence                                                            00      111234667999999999988654


Q ss_pred             --CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277          568 --DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC  645 (704)
Q Consensus       568 --dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg  645 (704)
                        -+.+.+||++..+....+. ...+|....|                                  .|....|+.+....
T Consensus       339 ~~PnalW~Wdlq~l~l~avLi-Qk~piraf~W----------------------------------dP~~prL~vctg~s  383 (447)
T KOG4497|consen  339 KYPNALWLWDLQNLKLHAVLI-QKHPIRAFEW----------------------------------DPGRPRLVVCTGKS  383 (447)
T ss_pred             CCCceEEEEechhhhhhhhhh-hccceeEEEe----------------------------------CCCCceEEEEcCCc
Confidence              3679999998776544443 5568889999                                  88888888887777


Q ss_pred             cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          646 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       646 ~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                      .+++|......                ....+...-.|.++.|..+|..++..+.|
T Consensus       384 rLY~W~psg~~----------------~V~vP~~GF~i~~l~W~~~g~~i~l~~kD  423 (447)
T KOG4497|consen  384 RLYFWAPSGPR----------------VVGVPKKGFNIQKLQWLQPGEFIVLCGKD  423 (447)
T ss_pred             eEEEEcCCCce----------------EEecCCCCceeeeEEecCCCcEEEEEcCC
Confidence            89999876532                22345556789999999999999888776

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1.7e-12  Score=142.91  Aligned_cols=202  Identities=13%  Similarity=0.031  Sum_probs=143.3

Q ss_pred             eeccCCccCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEE-EEeCCCe--EE
Q 005277          415 TLYQGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRT--AR  488 (704)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~l~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-sgs~dg~--i~  488 (704)
                      +.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.++... .+..+.+.+....|+|+|+.++ +.+.++.  |.
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence            334567789999999999998886653   468999999877653 4445666788899999998775 4555555  77


Q ss_pred             EEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (704)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg  565 (704)
                      +||++++... .+..+........|+|+|+.|+..+. +|  .|++||+.++...+ +..+.+.+....|+|||++|+..
T Consensus       274 ~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~  351 (435)
T PRK05137        274 TMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFT  351 (435)
T ss_pred             EEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEE
Confidence            7788876554 45556666778999999999988764 33  58888987766544 33345567778999999999876


Q ss_pred             eCC---CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe
Q 005277          566 DED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS  642 (704)
Q Consensus       566 ~~d---g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs  642 (704)
                      +.+   ..|.+||+.++.. ..+. ....+.+..|                                  +|+|+.|+..+
T Consensus       352 ~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~----------------------------------spDG~~i~~~~  395 (435)
T PRK05137        352 KQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTW----------------------------------APNGRVIMFFR  395 (435)
T ss_pred             EcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeE----------------------------------CCCCCEEEEEE
Confidence            543   3688899865543 2332 2224566777                                  99999887655


Q ss_pred             CC------CcEEEEeCCCC
Q 005277          643 AD------CTVKLWDVTTS  655 (704)
Q Consensus       643 ~D------g~V~iWd~~~~  655 (704)
                      .+      ..+.++|+..+
T Consensus       396 ~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        396 QTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             ccCCCCCcceEEEEECCCC
Confidence            43      25777777554

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.56  E-value=5.6e-14  Score=137.21  Aligned_cols=222  Identities=16%  Similarity=0.186  Sum_probs=156.4

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCE
Q 005277          356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF  435 (704)
Q Consensus       356 ~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~  435 (704)
                      -+.|||+|+++|+.+.- .+.|=|..+....                            + +..--..|.-+.|..|..+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~----------------------------q-lf~cldki~yieW~ads~~   62 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH----------------------------Q-LFLCLDKIVYIEWKADSCH   62 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHH----------------------------H-HHHHHHHhhheeeecccee
Confidence            35799999999999755 6667665542111                            1 1111356778899988887


Q ss_pred             EE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCE-EEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEE
Q 005277          436 IL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW  513 (704)
Q Consensus       436 l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~-l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~  513 (704)
                      ++ ....|+.|.+|++...+-...+.....++.+++|||+|+. +.+...+-.|.+|.+.+.+.... ......+..++|
T Consensus        63 ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f  141 (447)
T KOG4497|consen   63 ILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAF  141 (447)
T ss_pred             eeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEE
Confidence            66 5578889999999988888888888889999999999955 55667899999999988654433 333455689999


Q ss_pred             cCCCCEEEEEECCCcE---EEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC--CCeEEEEeCCCCeeeeeecCC
Q 005277          514 HINCNYIATGSSDKTV---RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE--DGTIMMWDLASGRCVTPLMGH  588 (704)
Q Consensus       514 ~p~~~~l~tgs~dg~I---~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~--dg~I~iwdl~~~~~~~~~~~h  588 (704)
                      +|+|++.+..+.-...   .+.....-..++.|....-..+.+.|+|||..|++-..  +-.|..|..            
T Consensus       142 ~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------  209 (447)
T KOG4497|consen  142 HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------  209 (447)
T ss_pred             CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee------------
Confidence            9999999988754222   22211222344555555667788999999998875321  222222221            


Q ss_pred             CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       589 ~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                      .-.+..+.|                                  +|.+++|+.|+.|+.+||-+--+
T Consensus       210 ~lG~k~v~w----------------------------------sP~~qflavGsyD~~lrvlnh~t  241 (447)
T KOG4497|consen  210 GLGLKFVEW----------------------------------SPCNQFLAVGSYDQMLRVLNHFT  241 (447)
T ss_pred             ccceeEEEe----------------------------------ccccceEEeeccchhhhhhceee
Confidence            235667788                                  99999999999999999866543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.1e-12  Score=144.26  Aligned_cols=218  Identities=18%  Similarity=0.126  Sum_probs=151.3

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (704)
                      .+..+...+.+.+|+|||+.|+..+.+   ..|.+|++.+...                             ..+..+.+
T Consensus       198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-----------------------------~~l~~~~g  248 (433)
T PRK04922        198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-----------------------------ELVASFRG  248 (433)
T ss_pred             EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-----------------------------EEeccCCC
Confidence            355677789999999999999988743   4689999865211                             11222334


Q ss_pred             CeEEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CCe--EEEEECCCCc
Q 005277          423 PVYSASFSPLGDFIL-SSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRT--ARIWSMDRIQ  496 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~-s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg~--i~lwd~~~~~  496 (704)
                      ...+.+|+|||+.|+ +.+.+|  .|.+||+.++.. ..+..+.......+|+|+|++++.++. +|.  +.++++.+++
T Consensus       249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~  327 (433)
T PRK04922        249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS  327 (433)
T ss_pred             CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            455789999999775 555555  599999987764 445555555678899999998887763 444  6666776665


Q ss_pred             eeEEeccCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC---Ce
Q 005277          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---GT  570 (704)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d---g~  570 (704)
                      ..+.. .+.......+|+|+|++|+..+.++   .|.+||+.+++... +. +........|+|||++|+..+.+   +.
T Consensus       328 ~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~  404 (433)
T PRK04922        328 AERLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYATREGGRGV  404 (433)
T ss_pred             eEEee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence            44433 2334455789999999998876443   59999998887653 32 22345567999999988876653   46


Q ss_pred             EEEEeCCCCeeeeeecCCCceeeeeee
Q 005277          571 IMMWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       571 I~iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      |.++++. +.....+..+.+.+...+|
T Consensus       405 L~~~~~~-g~~~~~l~~~~g~~~~p~w  430 (433)
T PRK04922        405 LAAVSTD-GRVRQRLVSADGEVREPAW  430 (433)
T ss_pred             EEEEECC-CCceEEcccCCCCCCCCcc
Confidence            8888885 4455556556666777777

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=7.2e-13  Score=145.31  Aligned_cols=218  Identities=17%  Similarity=0.175  Sum_probs=148.5

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      +..+...+.+.+|||||+.|+..+.+   ..|.+||+.+...                             ..+....+.
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-----------------------------~~l~~~~g~  241 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-----------------------------RVVANFKGS  241 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-----------------------------EEeecCCCC
Confidence            34567789999999999999987643   3589999875211                             112223345


Q ss_pred             eEEEEEcCCCCEEE-EEeCCCeEEEEeCCC-CceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CCeEEEEEC--CCCcee
Q 005277          424 VYSASFSPLGDFIL-SSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSM--DRIQPL  498 (704)
Q Consensus       424 V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg~i~lwd~--~~~~~~  498 (704)
                      +.+.+|+|||+.|+ +.+.+|...||.++. +.....+..+...+....|+|+|+.++..+. +|...+|.+  .++...
T Consensus       242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~  321 (427)
T PRK02889        242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ  321 (427)
T ss_pred             ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE
Confidence            66889999999876 567788877775532 2334555556556678899999998876653 466666655  444433


Q ss_pred             EEeccCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC---eEE
Q 005277          499 RIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG---TIM  572 (704)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg---~I~  572 (704)
                      +.. .+.......+|+|+|++|+..+.++   .|.+||+.++...... .+ .......|+|||+.|+.++.++   .+.
T Consensus       322 ~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~  398 (427)
T PRK02889        322 RVT-FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DT-TRDESPSFAPNGRYILYATQQGGRSVLA  398 (427)
T ss_pred             EEe-cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CC-CCccCceECCCCCEEEEEEecCCCEEEE
Confidence            332 2223345678999999999877654   5999999888765433 22 3346789999999988876544   466


Q ss_pred             EEeCCCCeeeeeecCCCceeeeeee
Q 005277          573 MWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       573 iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      +.++ .+.....+..+.+.+...+|
T Consensus       399 ~~~~-~g~~~~~l~~~~g~~~~p~w  422 (427)
T PRK02889        399 AVSS-DGRIKQRLSVQGGDVREPSW  422 (427)
T ss_pred             EEEC-CCCceEEeecCCCCCCCCcc
Confidence            6666 46566666666677777777

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=9.5e-13  Score=144.37  Aligned_cols=220  Identities=17%  Similarity=0.177  Sum_probs=144.6

Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEE-EEeCCCeEEEEEC
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRTARIWSM  492 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-sgs~dg~i~lwd~  492 (704)
                      +..+...+.+.+|+|||+.|+.++.+   ..|.+||+.+++... +....+.+....|+|+|+.++ +.+.+|...||.+
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            34567789999999999998876532   459999999886543 333345567899999999886 4567887677654


Q ss_pred             --CCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEe--CCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          493 --DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWD--VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       493 --~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd--~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                        ..+. .+.+..+........|+|+|+.|+..+. +|...+|.  +.++...+.. .+.......+|+|||++|+..+.
T Consensus       270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~s~  347 (427)
T PRK02889        270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTSPRISPDGKLLAYISR  347 (427)
T ss_pred             ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCceEECCCCCEEEEEEc
Confidence              4443 4445555555677899999998887654 45656664  4455443322 23334456899999999987765


Q ss_pred             CC---eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277          568 DG---TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD  644 (704)
Q Consensus       568 dg---~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D  644 (704)
                      ++   .|.+||+.+++... +... .......|                                  +|+|+.|+.++.+
T Consensus       348 ~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~----------------------------------spdg~~l~~~~~~  391 (427)
T PRK02889        348 VGGAFKLYVQDLATGQVTA-LTDT-TRDESPSF----------------------------------APNGRYILYATQQ  391 (427)
T ss_pred             cCCcEEEEEEECCCCCeEE-ccCC-CCccCceE----------------------------------CCCCCEEEEEEec
Confidence            54   69999998876543 3222 23356677                                  9999988877754


Q ss_pred             C-c--EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccC
Q 005277          645 C-T--VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR  691 (704)
Q Consensus       645 g-~--V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~  691 (704)
                      + .  +.+.++.. ..               ...+..+.+.+...+|+|-
T Consensus       392 ~g~~~l~~~~~~g-~~---------------~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        392 GGRSVLAAVSSDG-RI---------------KQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCEEEEEEECCC-Cc---------------eEEeecCCCCCCCCccCCC
Confidence            4 3  44444422 11               1223334456677788774

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.53  E-value=1e-12  Score=127.30  Aligned_cols=155  Identities=20%  Similarity=0.412  Sum_probs=115.1

Q ss_pred             EEEEEcCCCCEEEEEeC----------CCeEEEEeCCCC-ceeEEeec-CCcCeeEEEEcCCCCEEEEE--eCCCeEEEE
Q 005277          425 YSASFSPLGDFILSSSA----------DTTIRLWSTKLN-ANLVCYKG-HNYPVWDVQFNPQGHYFASS--SHDRTARIW  490 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~----------Dg~I~lwd~~~~-~~~~~~~~-h~~~V~~v~~sp~~~~l~sg--s~dg~i~lw  490 (704)
                      ..+.|+|+|++|+.-..          -|...+|.++.. ..+..+.- ..++|.+++|+|+|..|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999998774322          134556655322 33333332 35579999999999987665  367799999


Q ss_pred             ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      |++ .+++..+.  ...+..+.|+|+|++|++|+.   .|.|.+||+++.+.+..+. | ..++.++|+|||++|+++..
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence            997 55666654  467889999999999999874   4679999999888887664 3 34789999999999999864


Q ss_pred             ------CCeEEEEeCCCCeeeeee
Q 005277          568 ------DGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       568 ------dg~I~iwdl~~~~~~~~~  585 (704)
                            |+.++||+. .|+.+...
T Consensus       164 ~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             ccceeccccEEEEEe-cCeEeEec
Confidence                  788999997 46665543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=8.3e-13  Score=137.76  Aligned_cols=272  Identities=13%  Similarity=0.174  Sum_probs=187.4

Q ss_pred             eeCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC-----CCCCccceee-ccCC
Q 005277          348 INTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG-----PNGRKRSYTL-YQGH  420 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~h  420 (704)
                      +.+...-+.+..+|||+|+ |+|..-..|++||+......-............+..+..+     .......+.. ..-|
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h  127 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH  127 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence            3455666788999999865 6788899999999987543222211100000000000000     0000000000 0001


Q ss_pred             -----ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005277          421 -----SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI  495 (704)
Q Consensus       421 -----~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~  495 (704)
                           ...-..++++.-..-|++++....|.-++++.|..+..+....+.+++|..++-..+|++|+.+|.|-+||.+..
T Consensus       128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k  207 (703)
T KOG2321|consen  128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK  207 (703)
T ss_pred             eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence                 122234555544444555555567888999999999999888899999999999999999999999999999887


Q ss_pred             ceeEEec------cCCC-----CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC--CCEEEEEEecC--CC
Q 005277          496 QPLRIMA------GHLS-----DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR--SMILSLAMSPD--GR  560 (704)
Q Consensus       496 ~~~~~~~------~~~~-----~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~--~~i~~l~~spd--g~  560 (704)
                      +.+..+.      .|.+     .|+++.|+.+|-.+++|+.+|.|.|||+++.+++..- .|.  -+|..+.|.+.  +.
T Consensus       208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~  286 (703)
T KOG2321|consen  208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQN  286 (703)
T ss_pred             hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCc
Confidence            6655543      2223     3999999999999999999999999999999887643 444  48999999875  44


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE
Q 005277          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS  640 (704)
Q Consensus       561 ~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las  640 (704)
                      .+++. ....++|||-.+|+....+..-. .+..+++                                  -|++.++++
T Consensus       287 ~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~----------------------------------~p~sGm~f~  330 (703)
T KOG2321|consen  287 KVVSM-DKRILKIWDECTGKPMASIEPTS-DLNDFCF----------------------------------VPGSGMFFT  330 (703)
T ss_pred             eEEec-chHHhhhcccccCCceeeccccC-CcCceee----------------------------------ecCCceEEE
Confidence            55554 45689999999999888776433 3666655                                  788899999


Q ss_pred             EeCCCcEEEEeCCCCc
Q 005277          641 GSADCTVKLWDVTTST  656 (704)
Q Consensus       641 gs~Dg~V~iWd~~~~~  656 (704)
                      +-.++.+..|=+..-.
T Consensus       331 Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  331 ANESSKMHTYYIPSLG  346 (703)
T ss_pred             ecCCCcceeEEccccC
Confidence            9999998888776543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=1.4e-12  Score=129.85  Aligned_cols=247  Identities=17%  Similarity=0.230  Sum_probs=181.1

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      -..|...|.|++|.-..++|.+|..+|+|...|+.+.....                          +..-....+.|+.
T Consensus       101 ~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~--------------------------V~~~~~~~~~VY~  154 (609)
T KOG4227|consen  101 EHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY--------------------------VANENNNRGDVYH  154 (609)
T ss_pred             cCccccceEEEEEccCCeeEecCCCcceeEeeecccceeee--------------------------eecccCcccceee
Confidence            35566889999999999999999999999999988622111                          0111123469999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeEEe
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ-PLRIM  501 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~-~~~~~  501 (704)
                      +..+|..+.|++.+.+|.|.+||.+....   ....-........+.|+| ...++++.+..+-+.+||.+... ++...
T Consensus       155 m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~  234 (609)
T KOG4227|consen  155 MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQR  234 (609)
T ss_pred             cccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhh
Confidence            99999999999999999999999986542   222233445677899999 55678899999999999997643 22221


Q ss_pred             c---cC---CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC-------CEEEEEEecCCCEEEEEeCC
Q 005277          502 A---GH---LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-------MILSLAMSPDGRYMASGDED  568 (704)
Q Consensus       502 ~---~~---~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-------~i~~l~~spdg~~l~sg~~d  568 (704)
                      .   +-   ...-.++.|+|+|+.+.+--....-.+||+-+.++.-.-..|..       .+.+++|.-| ..+++|+.+
T Consensus       235 ~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~  313 (609)
T KOG4227|consen  235 SMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDH  313 (609)
T ss_pred             hccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcc
Confidence            1   11   12235788999999998877666777889887554332223332       4667788744 459999999


Q ss_pred             CeEEEEeCCCC-----------------------eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277          569 GTIMMWDLASG-----------------------RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI  625 (704)
Q Consensus       569 g~I~iwdl~~~-----------------------~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (704)
                      -.|++|.+...                       +.+..+++|.+.+..+.|                            
T Consensus       314 ~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF----------------------------  365 (609)
T KOG4227|consen  314 WGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF----------------------------  365 (609)
T ss_pred             cceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee----------------------------
Confidence            99999987521                       123456788888888888                            


Q ss_pred             EeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          626 IYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       626 ~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                            ++...+|++.|-.+.++||.-..
T Consensus       366 ------~~H~~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  366 ------SQHNNLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             ------cCCcceEeccchhhheecccccc
Confidence                  99999999999999999997543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=4.4e-12  Score=139.70  Aligned_cols=216  Identities=13%  Similarity=0.106  Sum_probs=150.4

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~---dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      +..+...+.+.+|||||+.|+..+.   +..|.+|++.+..                             ...+..+.+.
T Consensus       197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-----------------------------~~~l~~~~g~  247 (435)
T PRK05137        197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-----------------------------RELVGNFPGM  247 (435)
T ss_pred             EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-----------------------------EEEeecCCCc
Confidence            4567778999999999999988764   4679999986521                             1223345567


Q ss_pred             eEEEEEcCCCCEEE-EEeCCCe--EEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCce
Q 005277          424 VYSASFSPLGDFIL-SSSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQP  497 (704)
Q Consensus       424 V~~l~~sp~~~~l~-s~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg--~i~lwd~~~~~~  497 (704)
                      +.+.+|+|||+.|+ +.+.++.  |.+||+.++.. ..+..+........|+|+|+.++..+. +|  .|.+||+..+..
T Consensus       248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~  326 (435)
T PRK05137        248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP  326 (435)
T ss_pred             ccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence            78899999999775 5566655  77778886654 445556666778999999998887763 33  688888877655


Q ss_pred             eEEeccCCCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC------
Q 005277          498 LRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED------  568 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d------  568 (704)
                      .+.. .+...+....|+|+|++|+..+.+   ..|.+||+.++.. +.+. ....+....|+|||+.|+..+.+      
T Consensus       327 ~~lt-~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~  403 (435)
T PRK05137        327 RRIS-FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGA  403 (435)
T ss_pred             EEee-cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence            4443 344556778999999999887643   3588889865543 3343 23356788999999998775543      


Q ss_pred             CeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277          569 GTIMMWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       569 g~I~iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      ..+.++|+..+.. ..+. ..+.+...+|
T Consensus       404 ~~L~~~dl~g~~~-~~l~-~~~~~~~p~W  430 (435)
T PRK05137        404 PKLYTVDLTGRNE-REVP-TPGDASDPAW  430 (435)
T ss_pred             ceEEEEECCCCce-EEcc-CCCCccCccc
Confidence            3688888866544 3343 2334555666

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.52  E-value=1.4e-12  Score=130.74  Aligned_cols=205  Identities=17%  Similarity=0.250  Sum_probs=163.5

Q ss_pred             cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEeecCCcCeeEEEEcCCC-CEEEEEeCC--CeEEEE
Q 005277          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQG-HYFASSSHD--RTARIW  490 (704)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~d--g~i~lw  490 (704)
                      ...+++|.++...  +..|++|-.+|.+.+|....+.    .+..+..+ ..+..+.-++.. ..+++||..  ..+.+|
T Consensus       102 ~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw  178 (412)
T KOG3881|consen  102 SLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW  178 (412)
T ss_pred             ccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence            3456777777766  4578888999999999988443    23333333 456677777744 456668888  889999


Q ss_pred             ECCCCceeEEeccCC---------CCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCC-cEEEEeecCCCCEEEEEEecC
Q 005277          491 SMDRIQPLRIMAGHL---------SDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPD  558 (704)
Q Consensus       491 d~~~~~~~~~~~~~~---------~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~i~~l~~spd  558 (704)
                      |+++.+++..-..-.         -.++.+.|-|.  ...|++++.-+.+|+||.+.+ +++..|.-...+++++...|.
T Consensus       179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~  258 (412)
T KOG3881|consen  179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS  258 (412)
T ss_pred             ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCC
Confidence            999875554332111         13567888887  889999999999999999865 578888778889999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeee-ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277          559 GRYMASGDEDGTIMMWDLASGRCVTP-LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL  637 (704)
Q Consensus       559 g~~l~sg~~dg~I~iwdl~~~~~~~~-~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  637 (704)
                      |+++++|..-|.+..+|++.++.... +.+..+.+.++..                                  +|.+.+
T Consensus       259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~----------------------------------hp~~~~  304 (412)
T KOG3881|consen  259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHC----------------------------------HPTHPV  304 (412)
T ss_pred             CcEEEEecccchhheecccCceeeccccCCccCCcceEEE----------------------------------cCCCce
Confidence            99999999999999999999988776 7888999999988                                  899999


Q ss_pred             EEEEeCCCcEEEEeCCCCcccc
Q 005277          638 LASGSADCTVKLWDVTTSTKVL  659 (704)
Q Consensus       638 lasgs~Dg~V~iWd~~~~~~~~  659 (704)
                      ++++|-|..|||+|+.+.+.+.
T Consensus       305 las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  305 LASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             EEeeccceeEEEeecccchhhh
Confidence            9999999999999999965443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.47  E-value=9.6e-12  Score=121.68  Aligned_cols=227  Identities=16%  Similarity=0.231  Sum_probs=159.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcC--eeEEEEcCCCCEEEE-EeCC------CeEEEEECC
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP--VWDVQFNPQGHYFAS-SSHD------RTARIWSMD  493 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~--V~~v~~sp~~~~l~s-gs~d------g~i~lwd~~  493 (704)
                      ...+++|+.|...+++|..+| .+||+.+..+....-..+.+.  +..+-|  ..++++. ||.+      +.+.|||-.
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence            345599999999888888776 999998864432222222222  222222  3445443 3332      579999966


Q ss_pred             CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCcEEEEeecCCC--CEEEEEEecCCCEEEE-EeCCC
Q 005277          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVRIFIGHRS--MILSLAMSPDGRYMAS-GDEDG  569 (704)
Q Consensus       494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~h~~--~i~~l~~spdg~~l~s-g~~dg  569 (704)
                      ..+++..+. ..++|.+|.+.++  .|++. ..+.|.+|... +-+.++.+....+  .+.+++-+.+..+||. |-.-|
T Consensus        84 k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G  159 (346)
T KOG2111|consen   84 KERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG  159 (346)
T ss_pred             cCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence            667777665 5689999999765  45555 36789999987 4556665543332  2333333334445554 55679


Q ss_pred             eEEEEeCCCCee--eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc-
Q 005277          570 TIMMWDLASGRC--VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT-  646 (704)
Q Consensus       570 ~I~iwdl~~~~~--~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~-  646 (704)
                      .|.|-|+...+.  -..+.+|.+.|.+++.                                  +.+|.++||+|..|+ 
T Consensus       160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~L----------------------------------n~~Gt~vATaStkGTL  205 (346)
T KOG2111|consen  160 QVQIVDLASTKPNAPSIINAHDSDIACVAL----------------------------------NLQGTLVATASTKGTL  205 (346)
T ss_pred             eEEEEEhhhcCcCCceEEEcccCceeEEEE----------------------------------cCCccEEEEeccCcEE
Confidence            999999987655  4678899999999998                                  899999999999997 


Q ss_pred             EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       647 V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      |||||..+++.+.+..             -......|++++|||+..+||++|..||
T Consensus       206 IRIFdt~~g~~l~E~R-------------RG~d~A~iy~iaFSp~~s~LavsSdKgT  249 (346)
T KOG2111|consen  206 IRIFDTEDGTLLQELR-------------RGVDRADIYCIAFSPNSSWLAVSSDKGT  249 (346)
T ss_pred             EEEEEcCCCcEeeeee-------------cCCchheEEEEEeCCCccEEEEEcCCCe
Confidence            8999999998754321             1234567999999999999999999887

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.47  E-value=9.2e-11  Score=125.05  Aligned_cols=296  Identities=15%  Similarity=0.154  Sum_probs=175.7

Q ss_pred             CEE-EEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCC
Q 005277          364 SLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD  442 (704)
Q Consensus       364 ~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D  442 (704)
                      +++ ++-..+|.|.|.|..+.                            +....+......-..+.|+||++++++++.|
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~----------------------------~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd   57 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATN----------------------------KVVARIPTGGAPHAGLKFSPDGRYLYVANRD   57 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-----------------------------SEEEEEE-STTEEEEEE-TT-SSEEEEEETT
T ss_pred             cEEEEEecCCCEEEEEECCCC----------------------------eEEEEEcCCCCceeEEEecCCCCEEEEEcCC
Confidence            444 44556899999997652                            2333333332334457899999999999999


Q ss_pred             CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEEeccC-------CCCeeEEEEc
Q 005277          443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMAGH-------LSDVDCVRWH  514 (704)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~~~~~~~~~~~~~-------~~~V~~v~~~  514 (704)
                      |.|.++|+.+.+.+..++... ...+++++++|+++++++ ..+.+.++|.++.++++.+...       .+.+..+..+
T Consensus        58 g~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s  136 (369)
T PF02239_consen   58 GTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS  136 (369)
T ss_dssp             SEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred             CeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence            999999999999999888654 457899999999988775 7899999999999998877532       3467788888


Q ss_pred             CCCCEEEEEEC-CCcEEEEeCCCCcEEE-EeecCCCCEEEEEEecCCCEEEE-EeCCCeEEEEeCCCCeeeeeec----C
Q 005277          515 INCNYIATGSS-DKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMAS-GDEDGTIMMWDLASGRCVTPLM----G  587 (704)
Q Consensus       515 p~~~~l~tgs~-dg~I~iwd~~~~~~~~-~~~~h~~~i~~l~~spdg~~l~s-g~~dg~I~iwdl~~~~~~~~~~----~  587 (704)
                      |....+++.-. .+.|.+.|....+.+. .............|+|+|+++++ ...++.|-++|..+++.+..+.    .
T Consensus       137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p  216 (369)
T PF02239_consen  137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP  216 (369)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB
T ss_pred             CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccc
Confidence            88886665554 4888888987654432 23334556788999999998766 4567799999999988776552    1


Q ss_pred             CCc-----------eeeeeeee---eeehccccccccccccccce--eeeeeeEEeecccCCCCCEEEEE----eCCCcE
Q 005277          588 HTS-----------CVWTLAYR---FLLLVTNAYLKISDKVSTGF--LFYSLTIIYFGCASCEGSLLASG----SADCTV  647 (704)
Q Consensus       588 h~~-----------~V~sl~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~g~~lasg----s~Dg~V  647 (704)
                      |..           ++|...-.   ....................  .+.......+...+|+++++.+.    ...++|
T Consensus       217 ~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v  296 (369)
T PF02239_consen  217 HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTV  296 (369)
T ss_dssp             EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-E
T ss_pred             cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceE
Confidence            222           22222110   00011111111111111000  00000011223349999999888    455899


Q ss_pred             EEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          648 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       648 ~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      .|+|..+.+....            +...  ....+..+.|+++|..+..+..++
T Consensus       297 ~viD~~tl~~~~~------------i~~~--~~~~~~h~ef~~dG~~v~vS~~~~  337 (369)
T PF02239_consen  297 QVIDKKTLKVVKT------------ITPG--PGKRVVHMEFNPDGKEVWVSVWDG  337 (369)
T ss_dssp             EEEECCGTEEEE-------------HHHH--HT--EEEEEE-TTSSEEEEEEE--
T ss_pred             EEEECcCcceeEE------------Eecc--CCCcEeccEECCCCCEEEEEEecC
Confidence            9999988643321            1111  122489999999999888777654

...

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.47  E-value=5.5e-12  Score=122.22  Aligned_cols=149  Identities=22%  Similarity=0.408  Sum_probs=111.9

Q ss_pred             eEEEEcCCCCEEEEEeC----------CCeEEEEECCC-CceeEEecc-CCCCeeEEEEcCCCCEEEEE--ECCCcEEEE
Q 005277          467 WDVQFNPQGHYFASSSH----------DRTARIWSMDR-IQPLRIMAG-HLSDVDCVRWHINCNYIATG--SSDKTVRLW  532 (704)
Q Consensus       467 ~~v~~sp~~~~l~sgs~----------dg~i~lwd~~~-~~~~~~~~~-~~~~V~~v~~~p~~~~l~tg--s~dg~I~iw  532 (704)
                      ..+.|+|+|.+|++-..          -+...+|.++. ..++..+.- ..++|.+++|+|+|+.+++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46889999988765443          13345555532 234444432 34579999999999987654  467899999


Q ss_pred             eCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC---CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccc
Q 005277          533 DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE---DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLK  609 (704)
Q Consensus       533 d~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~---dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~  609 (704)
                      |++ ++.+..+  +...+..+.|+|+|++|++|+.   .|.|.+||+++.+.+.... | ..+..+.|            
T Consensus        89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~W------------  151 (194)
T PF08662_consen   89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEW------------  151 (194)
T ss_pred             cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEE------------
Confidence            996 6666666  3567889999999999999874   4679999999888887765 3 34678899            


Q ss_pred             cccccccceeeeeeeEEeecccCCCCCEEEEEeC------CCcEEEEeCCC
Q 005277          610 ISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA------DCTVKLWDVTT  654 (704)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~------Dg~V~iWd~~~  654 (704)
                                            +|+|++|++++.      |+.++||++..
T Consensus       152 ----------------------sPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  152 ----------------------SPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             ----------------------cCCCCEEEEEEeccceeccccEEEEEecC
Confidence                                  999999998874      78999999864

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.46  E-value=4.6e-12  Score=127.00  Aligned_cols=207  Identities=14%  Similarity=0.238  Sum_probs=160.1

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      ..|..++.. | ..|.+|-.+|.+.+|........                        ......+..+ .++..+.-++
T Consensus       106 ~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~h------------------------ss~l~~la~g-~g~~~~r~~~  158 (412)
T KOG3881|consen  106 KSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLH------------------------SSKLIKLATG-PGLYDVRQTD  158 (412)
T ss_pred             ccccchhhc-C-CEEEEEecCCcEEEEeccCCccc------------------------cccceeeecC-CceeeeccCC
Confidence            344444432 3 35777889999999998742111                        0111222222 5677777777


Q ss_pred             CCCEEE-EEeCC--CeEEEEeCCCCceeEEeecC-------CcC--eeEEEEcCC--CCEEEEEeCCCeEEEEECCCC-c
Q 005277          432 LGDFIL-SSSAD--TTIRLWSTKLNANLVCYKGH-------NYP--VWDVQFNPQ--GHYFASSSHDRTARIWSMDRI-Q  496 (704)
Q Consensus       432 ~~~~l~-s~s~D--g~I~lwd~~~~~~~~~~~~h-------~~~--V~~v~~sp~--~~~l~sgs~dg~i~lwd~~~~-~  496 (704)
                      ...+++ +|+..  ..+.+||+...+.+..-+.-       .-|  ++++.|-+.  ...|++++.-+.+++||.+.+ +
T Consensus       159 ~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR  238 (412)
T KOG3881|consen  159 TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR  238 (412)
T ss_pred             CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc
Confidence            666555 58887  78999999988665544321       123  457889887  888999999999999999864 5


Q ss_pred             eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE-eecCCCCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (704)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwd  575 (704)
                      |+..+.-...+++++...|.++.|++|...|.+..||++.++.... +.+..+.|+++..+|.+++|+++|-|..++|+|
T Consensus       239 PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD  318 (412)
T KOG3881|consen  239 PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD  318 (412)
T ss_pred             ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence            7888888889999999999999999999999999999999998776 788899999999999999999999999999999


Q ss_pred             CCCCeeeeee
Q 005277          576 LASGRCVTPL  585 (704)
Q Consensus       576 l~~~~~~~~~  585 (704)
                      +.+.+++...
T Consensus       319 ~ktrkll~kv  328 (412)
T KOG3881|consen  319 IKTRKLLHKV  328 (412)
T ss_pred             cccchhhhhh
Confidence            9986665443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.42  E-value=5.6e-11  Score=130.56  Aligned_cols=162  Identities=22%  Similarity=0.215  Sum_probs=118.7

Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEE-EeCCC--eEEEE
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDR--TARIW  490 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s-gs~dg--~i~lw  490 (704)
                      +..+...+.+.+|+|+|++|+.++.+   ..|++||+.++.... +..+...+.+++|+|+|+.|+. .+.++  .|++|
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~  263 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM  263 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence            34466678899999999999876543   479999998875543 3345556778999999987764 44444  58889


Q ss_pred             ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECC-C--cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      ++.++.... +..+........|+|+|+.|+..+.. +  .|++||+.+++..+ +..+...+....|+|+|++|+.++.
T Consensus       264 d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~~~~~spdg~~i~~~~~  341 (417)
T TIGR02800       264 DLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNASPSWSPDGDLIAFVHR  341 (417)
T ss_pred             ECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccCeEECCCCCEEEEEEc
Confidence            998765433 34454555678999999988876643 3  58888988776544 4445566778899999999998887


Q ss_pred             CC---eEEEEeCCCCee
Q 005277          568 DG---TIMMWDLASGRC  581 (704)
Q Consensus       568 dg---~I~iwdl~~~~~  581 (704)
                      ++   .|.+||+.++..
T Consensus       342 ~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       342 EGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             cCCceEEEEEeCCCCCe
Confidence            76   899999887643

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=1.4e-12  Score=133.70  Aligned_cols=241  Identities=20%  Similarity=0.285  Sum_probs=174.4

Q ss_pred             ceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe---------------------------------
Q 005277          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---------------------------------  459 (704)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~---------------------------------  459 (704)
                      ....|.+|.|.|..+.|+..|..|++||.|..|.+||+..+.....+                                 
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            44567889999999999999999999999999999998755433222                                 


Q ss_pred             ---------------ecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEec---cCCC---CeeEEEEcCC-
Q 005277          460 ---------------KGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMA---GHLS---DVDCVRWHIN-  516 (704)
Q Consensus       460 ---------------~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~~~~~~~~---~~~~---~V~~v~~~p~-  516 (704)
                                     ..|.++|.-++.-|+. .-|.+++.|+.+.-+|++...+...+.   .+..   ....++.+|. 
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence                           2356667777777743 447778888888888887765543332   2223   4567888884 


Q ss_pred             CCEEEEEECCCcEEEEeCCCCc------EEEEeecC------CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC--C---
Q 005277          517 CNYIATGSSDKTVRLWDVSSGE------CVRIFIGH------RSMILSLAMSPDGRYMASGDEDGTIMMWDLAS--G---  579 (704)
Q Consensus       517 ~~~l~tgs~dg~I~iwd~~~~~------~~~~~~~h------~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~--~---  579 (704)
                      .+.+++|+.|-.+++||.+.-.      .+..|..|      ...|+|++|+.+|.-|.++-.|-.|+++.-..  |   
T Consensus       294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p  373 (559)
T KOG1334|consen  294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP  373 (559)
T ss_pred             ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence            5589999999999999987422      22333322      34699999998877677777777899995432  2   


Q ss_pred             -------eeeee-ecCCCc--eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          580 -------RCVTP-LMGHTS--CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       580 -------~~~~~-~~~h~~--~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                             ..+.. ++||..  .|..+.|                                 +.|...++++||.-|.|.|
T Consensus       374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNF---------------------------------fGPrsEyVvSGSDCGhIFi  420 (559)
T KOG1334|consen  374 DPSSPREQYVKRVYKGHRNSRTVKGVNF---------------------------------FGPRSEYVVSGSDCGHIFI  420 (559)
T ss_pred             CCCcchhhccchhhcccccccccceeee---------------------------------ccCccceEEecCccceEEE
Confidence                   12222 677763  4555555                                 2788999999999999999


Q ss_pred             EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                      |+-.+++.               +..+.+...-|.||.=+|--.+||+++-|
T Consensus       421 W~K~t~ei---------------i~~MegDr~VVNCLEpHP~~PvLAsSGid  457 (559)
T KOG1334|consen  421 WDKKTGEI---------------IRFMEGDRHVVNCLEPHPHLPVLASSGID  457 (559)
T ss_pred             EecchhHH---------------HHHhhcccceEeccCCCCCCchhhccCCc
Confidence            99888754               44555555688899999999999988866

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=1.7e-11  Score=128.17  Aligned_cols=234  Identities=16%  Similarity=0.221  Sum_probs=170.3

Q ss_pred             CCccCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCcee---------EE-------------------eecCC------
Q 005277          419 GHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANL---------VC-------------------YKGHN------  463 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~---------~~-------------------~~~h~------  463 (704)
                      +|+...+.|..+|||+|++ +|...-.|++||+..-...         ..                   +.-|.      
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            5788889999999999866 7778889999998643210         00                   01110      


Q ss_pred             -----cCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005277          464 -----YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE  538 (704)
Q Consensus       464 -----~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~  538 (704)
                           ..-.+++++.-..-+++++....|+-++++.++-+..+....+.+++|..++-..+|++|+.+|.|..||.++..
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence                 122344555434446666667789999999999999998888999999999999999999999999999999877


Q ss_pred             EEEEee------cCCC-----CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee-cCCCceeeeeeeeeeehcccc
Q 005277          539 CVRIFI------GHRS-----MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL-MGHTSCVWTLAYRFLLLVTNA  606 (704)
Q Consensus       539 ~~~~~~------~h~~-----~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~-~~h~~~V~sl~~~~~~~~~~~  606 (704)
                      .+..+.      .|.+     .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..- .+...+|..+.|..       
T Consensus       209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~-------  281 (703)
T KOG2321|consen  209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD-------  281 (703)
T ss_pred             hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc-------
Confidence            665543      2333     4999999999999999999999999999998876543 23346788888821       


Q ss_pred             ccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEE
Q 005277          607 YLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL  686 (704)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l  686 (704)
                                               ..++..|+|.. ...++|||-.+++....+.                ...++..+
T Consensus       282 -------------------------~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiE----------------pt~~lND~  319 (703)
T KOG2321|consen  282 -------------------------TDQQNKVVSMD-KRILKIWDECTGKPMASIE----------------PTSDLNDF  319 (703)
T ss_pred             -------------------------cCCCceEEecc-hHHhhhcccccCCceeecc----------------ccCCcCce
Confidence                                     22344555554 4689999999887643221                12347777


Q ss_pred             EEccCCcEEEEeecC
Q 005277          687 QFSRRNLLFAAGALS  701 (704)
Q Consensus       687 ~fs~~g~~La~gs~d  701 (704)
                      ++-|++-++.+|-.+
T Consensus       320 C~~p~sGm~f~Ane~  334 (703)
T KOG2321|consen  320 CFVPGSGMFFTANES  334 (703)
T ss_pred             eeecCCceEEEecCC
Confidence            888877766666443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.40  E-value=7.8e-11  Score=129.42  Aligned_cols=217  Identities=17%  Similarity=0.132  Sum_probs=148.1

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      +..+...+.+.+|||||++||.+..+   ..|.+|++.+..                             ...+..+.+.
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-----------------------------~~~~~~~~~~  235 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-----------------------------REKVASFPGM  235 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-----------------------------EEEeecCCCC
Confidence            44566678999999999999988754   479999986521                             1122234456


Q ss_pred             eEEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCce
Q 005277          424 VYSASFSPLGDFIL-SSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQP  497 (704)
Q Consensus       424 V~~l~~sp~~~~l~-s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg--~i~lwd~~~~~~  497 (704)
                      +.+++|+||++.|+ +.+.++  .|.+|++.++.. ..+..+........|+|+|+.++.++. ++  .|.+||+.+++.
T Consensus       236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~  314 (417)
T TIGR02800       236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV  314 (417)
T ss_pred             ccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            67789999999776 444444  588889887654 334445555667899999998877654 33  578888877654


Q ss_pred             eEEeccCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC---eE
Q 005277          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG---TI  571 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg---~I  571 (704)
                      .+ +..+...+....|+|++++|+.++.++   .|.+||+.++.... +... .......|+|+|++|+.++.++   .+
T Consensus       315 ~~-l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l  391 (417)
T TIGR02800       315 RR-LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRGGRGVL  391 (417)
T ss_pred             EE-eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCCCcEEE
Confidence            43 343556677889999999999988776   79999998865433 3222 2345668999999888877654   45


Q ss_pred             EEEeCCCCeeeeeecCCCceeeeeee
Q 005277          572 MMWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       572 ~iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      .+.+. +++....+..+.+.+..+.|
T Consensus       392 ~~~~~-~g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       392 GLVST-DGRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             EEEEC-CCceeeECCCCCCCcCCCCC
Confidence            55554 45555555544555555555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=2.1e-10  Score=126.51  Aligned_cols=199  Identities=17%  Similarity=0.150  Sum_probs=133.7

Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEE-EeCCC--eEEEE
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDR--TARIW  490 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s-gs~dg--~i~lw  490 (704)
                      +..+...+.+..|+|||+.|+..+.+   ..|.+|++.++.... +....+.+....|+|+|+.++. .+.+|  .|.+|
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~  272 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM  272 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence            34566788999999999998866533   468999998776533 3333344567899999998874 44444  68888


Q ss_pred             ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      |++++...+ +..+........|+|+|+.|+..+. +|  .|+++|+.+++..+... .........|+|||++|+..+.
T Consensus       273 d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~~  350 (430)
T PRK00178        273 DLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMVHR  350 (430)
T ss_pred             ECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEEEEc
Confidence            998876543 4445555677899999998877654 33  58888888887544332 2233446789999999987664


Q ss_pred             C-C--eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277          568 D-G--TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD  644 (704)
Q Consensus       568 d-g--~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D  644 (704)
                      + +  .|.+||+.+++... +. +........|                                  +|+|++++..+.+
T Consensus       351 ~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~----------------------------------spdg~~i~~~~~~  394 (430)
T PRK00178        351 QDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSV----------------------------------APNGTMLIYATRQ  394 (430)
T ss_pred             cCCceEEEEEECCCCCEEE-cc-CCCCCCCceE----------------------------------CCCCCEEEEEEec
Confidence            3 3  58889998875432 22 1112224456                                  9999988766643


Q ss_pred             -C--cEEEEeCCC
Q 005277          645 -C--TVKLWDVTT  654 (704)
Q Consensus       645 -g--~V~iWd~~~  654 (704)
                       |  .|.++++..
T Consensus       395 ~g~~~l~~~~~~g  407 (430)
T PRK00178        395 QGRGVLMLVSING  407 (430)
T ss_pred             CCceEEEEEECCC
Confidence             3  466666643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=2e-10  Score=126.59  Aligned_cols=217  Identities=14%  Similarity=0.101  Sum_probs=144.0

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      +..+...+.+..|||||+.|+..+.+   ..|.+|++.+...                             ..+....+.
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-----------------------------~~l~~~~g~  244 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-----------------------------EQITNFEGL  244 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-----------------------------EEccCCCCC
Confidence            44566778999999999999877643   3588888765211                             111122234


Q ss_pred             eEEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-C--CeEEEEECCCCce
Q 005277          424 VYSASFSPLGDFIL-SSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-D--RTARIWSMDRIQP  497 (704)
Q Consensus       424 V~~l~~sp~~~~l~-s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-d--g~i~lwd~~~~~~  497 (704)
                      +....|+|||+.|+ +.+.+|  .|.+||+.++... .+..+........|+|+|+.++..+. +  ..|.++++.+++.
T Consensus       245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            55689999999877 555555  5888899876543 34445556677899999998776653 3  3577778877765


Q ss_pred             eEEeccCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC---CeE
Q 005277          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---GTI  571 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d---g~I  571 (704)
                      .+... .........|+|+|++|+..+.++   .|.+||+.++.......  ........|+|||++++..+.+   ..|
T Consensus       324 ~~lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l  400 (430)
T PRK00178        324 ERVTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVL  400 (430)
T ss_pred             EEeec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEE
Confidence            44332 223344578999999998876532   48899998886543322  2223356899999998876643   357


Q ss_pred             EEEeCCCCeeeeeecCCCceeeeeee
Q 005277          572 MMWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       572 ~iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      .++++. +.....+..+.+.+....|
T Consensus       401 ~~~~~~-g~~~~~l~~~~g~~~~p~w  425 (430)
T PRK00178        401 MLVSIN-GRVRLPLPTAQGEVREPSW  425 (430)
T ss_pred             EEEECC-CCceEECcCCCCCcCCCcc
Confidence            777874 4444455555566677777

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=2.7e-10  Score=125.44  Aligned_cols=162  Identities=20%  Similarity=0.204  Sum_probs=110.1

Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEE-EeCCCe--EEEE
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSA-DT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDRT--ARIW  490 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~-Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s-gs~dg~--i~lw  490 (704)
                      +..+...+.+..|+|||+.|+..+. ++  .|.+||+.+++... +...........|+|+|+.++. .+.+|.  |.+|
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV  291 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence            3345678899999999998886543 33  58888998776432 2222333457899999998765 455664  7777


Q ss_pred             ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      |+++++..+ +..+.......+|+|+|+.|+..+. ++  .|+++|+.+++..+.. .........+|+|||++|+..+.
T Consensus       292 dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        292 DIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVNR  369 (448)
T ss_pred             ECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEEe
Confidence            888765443 4445556678899999998877654 33  4777788877755432 22233445799999999887654


Q ss_pred             -CC--eEEEEeCCCCee
Q 005277          568 -DG--TIMMWDLASGRC  581 (704)
Q Consensus       568 -dg--~I~iwdl~~~~~  581 (704)
                       ++  .|.++|+.+++.
T Consensus       370 ~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        370 TNGKFNIARQDLETGAM  386 (448)
T ss_pred             cCCceEEEEEECCCCCe
Confidence             33  466678877754

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=3.3e-10  Score=123.81  Aligned_cols=201  Identities=17%  Similarity=0.170  Sum_probs=130.4

Q ss_pred             CccCeEEEEEcCCCCE---EEEEeCCC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-----CCeEEE
Q 005277          420 HSGPVYSASFSPLGDF---ILSSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-----DRTARI  489 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~---l~s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-----dg~i~l  489 (704)
                      ....+.+-.|+|||+.   ++++..+|  .|.+.++.+++... +....+......|+|||+.|+..+.     +..+.+
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence            4455677899999974   23454444  57777888665433 2223444557899999998886652     234455


Q ss_pred             EECCC---CceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEE--eCCC-CcEEEEeecCCCCEEEEEEecCCCEE
Q 005277          490 WSMDR---IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLW--DVSS-GECVRIFIGHRSMILSLAMSPDGRYM  562 (704)
Q Consensus       490 wd~~~---~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iw--d~~~-~~~~~~~~~h~~~i~~l~~spdg~~l  562 (704)
                      |++..   +.+.+...++.......+|+|||+.|+..+ .+|...+|  ++.. +.....+..+...+....|||||++|
T Consensus       262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L  341 (428)
T PRK01029        262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI  341 (428)
T ss_pred             eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence            77765   234444433334456789999999888765 45655555  4432 33344455555677889999999998


Q ss_pred             EEEeCC---CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEE
Q 005277          563 ASGDED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA  639 (704)
Q Consensus       563 ~sg~~d---g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~la  639 (704)
                      +..+.+   ..|.+||+.+++... +......+.+..|                                  +|+|+.|+
T Consensus       342 af~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~w----------------------------------SpDG~~L~  386 (428)
T PRK01029        342 AFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSW----------------------------------AIDSLHLV  386 (428)
T ss_pred             EEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEE----------------------------------CCCCCEEE
Confidence            876543   479999998886543 3322345566778                                  99999876


Q ss_pred             EEeC---CCcEEEEeCCCCc
Q 005277          640 SGSA---DCTVKLWDVTTST  656 (704)
Q Consensus       640 sgs~---Dg~V~iWd~~~~~  656 (704)
                      ..+.   .+.|.+||+..+.
T Consensus       387 f~~~~~g~~~L~~vdl~~g~  406 (428)
T PRK01029        387 YSAGNSNESELYLISLITKK  406 (428)
T ss_pred             EEECCCCCceEEEEECCCCC
Confidence            5432   3568888887654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.34  E-value=1.6e-09  Score=115.61  Aligned_cols=240  Identities=13%  Similarity=0.138  Sum_probs=154.0

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC
Q 005277          355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD  434 (704)
Q Consensus       355 ~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  434 (704)
                      ..+.|+|||+++.+++.||.|.++|+.+..                            ........ ....++++++||+
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~----------------------------~v~~i~~G-~~~~~i~~s~DG~   90 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGK----------------------------VVATIKVG-GNPRGIAVSPDGK   90 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSS----------------------------EEEEEE-S-SEEEEEEE--TTT
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCccc----------------------------EEEEEecC-CCcceEEEcCCCC
Confidence            447799999999999999999999998632                            22222222 3457899999999


Q ss_pred             EEEEE-eCCCeEEEEeCCCCceeEEeecC-------CcCeeEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEE-eccC
Q 005277          435 FILSS-SADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRI-MAGH  504 (704)
Q Consensus       435 ~l~s~-s~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~v~~sp~~~~l~sgs~-dg~i~lwd~~~~~~~~~-~~~~  504 (704)
                      +++++ ...+++.++|..+.+.+..+...       ...+..|..+|....++..-. .+.|-+.|......+.. ....
T Consensus        91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~  170 (369)
T PF02239_consen   91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV  170 (369)
T ss_dssp             EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred             EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc
Confidence            98866 46899999999999988877543       346788888998886666655 48888888776554432 2223


Q ss_pred             CCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCcEEEEe----------------------------------------
Q 005277          505 LSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIF----------------------------------------  543 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~~~~~~----------------------------------------  543 (704)
                      ........|+|+++|++++ ..+..|.++|..+++.+..+                                        
T Consensus       171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~  250 (369)
T PF02239_consen  171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP  250 (369)
T ss_dssp             -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T
T ss_pred             cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCc
Confidence            4456678999999988775 45667888888776554321                                        


Q ss_pred             ---------------ecCCCCEEEEEEecCCCEEEEE----eCCCeEEEEeCCCCeeeeeecCC-Cceeeeeeeeeeehc
Q 005277          544 ---------------IGHRSMILSLAMSPDGRYMASG----DEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYRFLLLV  603 (704)
Q Consensus       544 ---------------~~h~~~i~~l~~spdg~~l~sg----~~dg~I~iwdl~~~~~~~~~~~h-~~~V~sl~~~~~~~~  603 (704)
                                     ....++ .-+..+|+++++.+.    ...+.|.++|..+.+.+.++... ...+..+.|      
T Consensus       251 v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef------  323 (369)
T PF02239_consen  251 VSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF------  323 (369)
T ss_dssp             TT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE------
T ss_pred             cccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE------
Confidence                           111112 346678899988887    45578999999988777776422 234677777      


Q ss_pred             cccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC--CCcEEEEeCCCCccc
Q 005277          604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA--DCTVKLWDVTTSTKV  658 (704)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~--Dg~V~iWd~~~~~~~  658 (704)
                                                  +++|+.+..+..  +|.|.|||..+.+..
T Consensus       324 ----------------------------~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~  352 (369)
T PF02239_consen  324 ----------------------------NPDGKEVWVSVWDGNGAIVVYDAKTLKEK  352 (369)
T ss_dssp             -----------------------------TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             ----------------------------CCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence                                        999997755543  347999999987653

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=9.1e-11  Score=125.15  Aligned_cols=284  Identities=17%  Similarity=0.203  Sum_probs=197.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      .+....|++|+....++|+|+.||.++|..+.+........++.             .......-+.+.||++.|.-+.|
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gla-------------a~snLsmNQtLeGH~~sV~vvTW   79 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLA-------------AASNLSMNQTLEGHNASVMVVTW   79 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccc-------------cccccchhhhhccCcceEEEEEe
Confidence            34568999999999999999999999999987633222111110             11123345678999999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEe--ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC
Q 005277          430 SPLGDFILSSSADTTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD  507 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~--~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~  507 (704)
                      +.+.+.|-++..+|.|.+|-+-.+.-...+  ....+.|.+++|+.+|..++..-.||.|.+=.++..+.-.. .-....
T Consensus        80 Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK-eLkg~~  158 (1189)
T KOG2041|consen   80 NENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK-ELKGQL  158 (1189)
T ss_pred             ccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch-hcchhe
Confidence            999999999999999999988766543222  22456789999999999999999999998888765432111 111223


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCC-------cE-EE---EeecCCCCEEEEEEe--------cCCCEEEEEeCC
Q 005277          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSG-------EC-VR---IFIGHRSMILSLAMS--------PDGRYMASGDED  568 (704)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-------~~-~~---~~~~h~~~i~~l~~s--------pdg~~l~sg~~d  568 (704)
                      ...+.|++|...++.+-.+|.+.+||....       .+ +.   .+......|-.+.|.        ||...|+++-..
T Consensus       159 l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n  238 (1189)
T KOG2041|consen  159 LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN  238 (1189)
T ss_pred             ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence            457899999999999999999999997532       11 11   111122235556654        467789999999


Q ss_pred             CeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC--
Q 005277          569 GTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC--  645 (704)
Q Consensus       569 g~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg--  645 (704)
                      |.+.|..-.+. .++-.-.  .-.+....|                                  +++|.+||.+|.|.  
T Consensus       239 Gr~QiMR~eND~~Pvv~dt--gm~~vgakW----------------------------------nh~G~vLAvcG~~~da  282 (1189)
T KOG2041|consen  239 GRMQIMRSENDPEPVVVDT--GMKIVGAKW----------------------------------NHNGAVLAVCGNDSDA  282 (1189)
T ss_pred             ceehhhhhcCCCCCeEEec--ccEeeccee----------------------------------cCCCcEEEEccCcccc
Confidence            98887643322 2222212  245667778                                  99999999998653  


Q ss_pred             -------cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          646 -------TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       646 -------~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                             .|+++..-.                ..+.++....+.|++++|-..|..+|.+.
T Consensus       283 ~~~~d~n~v~Fysp~G----------------~i~gtlkvpg~~It~lsWEg~gLriA~Av  327 (1189)
T KOG2041|consen  283 DEPTDSNKVHFYSPYG----------------HIVGTLKVPGSCITGLSWEGTGLRIAIAV  327 (1189)
T ss_pred             cCccccceEEEeccch----------------hheEEEecCCceeeeeEEcCCceEEEEEe
Confidence                   333332211                34567777888999999999998887664

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.34  E-value=3.6e-09  Score=112.77  Aligned_cols=236  Identities=14%  Similarity=0.207  Sum_probs=154.4

Q ss_pred             cCeEEEEEcCCCCEEEEEeC----CCeEEEEeCCCC-ce---eEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 005277          422 GPVYSASFSPLGDFILSSSA----DTTIRLWSTKLN-AN---LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSM  492 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~----Dg~I~lwd~~~~-~~---~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~  492 (704)
                      .....++++|++++|+++..    +|.|..|.+... ..   +............++++|++++++++. .+|++.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            44567889999999998876    578999988764 22   333332344556899999999998887 5899999999


Q ss_pred             CCC-ceeEE---ec----------cCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCc--EE--EEe-ecCCCCEEE
Q 005277          493 DRI-QPLRI---MA----------GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGE--CV--RIF-IGHRSMILS  552 (704)
Q Consensus       493 ~~~-~~~~~---~~----------~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~--~~--~~~-~~h~~~i~~  552 (704)
                      +.. .....   +.          .......++.|+|+++++++... ...|++|++....  ..  ..+ .......+.
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            873 32221   11          12245678999999999988653 4579999997654  32  122 244567899


Q ss_pred             EEEecCCCEEEEEe-CCCeEEEEeCC--CCee--eeeecCC----C--ceeeeeeeeeeehccccccccccccccceeee
Q 005277          553 LAMSPDGRYMASGD-EDGTIMMWDLA--SGRC--VTPLMGH----T--SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFY  621 (704)
Q Consensus       553 l~~spdg~~l~sg~-~dg~I~iwdl~--~~~~--~~~~~~h----~--~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (704)
                      ++|+|+|+++++.. .++.|.++++.  ++..  +..+...    .  .....+.+                        
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i------------------------  252 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI------------------------  252 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE------------------------
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEE------------------------
Confidence            99999999887654 57889999987  4422  1221111    1  12223333                        


Q ss_pred             eeeEEeecccCCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277          622 SLTIIYFGCASCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       622 ~~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~  700 (704)
                                +|+|++|+++. .+++|.+|++.....           .+..+..++........+.|+|+|++|+++..
T Consensus       253 ----------spdg~~lyvsnr~~~sI~vf~~d~~~g-----------~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~  311 (345)
T PF10282_consen  253 ----------SPDGRFLYVSNRGSNSISVFDLDPATG-----------TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ  311 (345)
T ss_dssp             -----------TTSSEEEEEECTTTEEEEEEECTTTT-----------TEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred             ----------ecCCCEEEEEeccCCEEEEEEEecCCC-----------ceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence                      99999886665 677899999954321           11334455554555789999999999998876


Q ss_pred             CC
Q 005277          701 SK  702 (704)
Q Consensus       701 dg  702 (704)
                      +.
T Consensus       312 ~s  313 (345)
T PF10282_consen  312 DS  313 (345)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=3.1e-10  Score=125.03  Aligned_cols=216  Identities=15%  Similarity=0.097  Sum_probs=139.3

Q ss_pred             eeCCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          348 INTHNGLNCASISQDGSLVAGGFS-DS--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~lasg~~-dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      ..+...+.+..|||||+.|+..+. ++  .|.+||+.+...                          .....+   .+..
T Consensus       214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--------------------------~~lt~~---~g~~  264 (448)
T PRK04792        214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--------------------------EKVTSF---PGIN  264 (448)
T ss_pred             ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--------------------------EEecCC---CCCc
Confidence            344556789999999999987754 33  477777654211                          111111   2233


Q ss_pred             EEEEEcCCCCEEE-EEeCCCe--EEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCcee
Q 005277          425 YSASFSPLGDFIL-SSSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQPL  498 (704)
Q Consensus       425 ~~l~~sp~~~~l~-s~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg--~i~lwd~~~~~~~  498 (704)
                      ...+|+|||+.|+ +.+.+|.  |.+||+.+++. ..+..+.......+|+|+|+.++..+. ++  .|.++|+.+++..
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~  343 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS  343 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            4679999999876 4566665  77778876654 344445556678899999998876653 33  4666677776654


Q ss_pred             EEeccCCCCeeEEEEcCCCCEEEEEECC-C--cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC-C--eEE
Q 005277          499 RIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-G--TIM  572 (704)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d-g--~I~  572 (704)
                      +... ........+|+|+|++|+..+.+ +  .|.++|+.++.... +... .......|+|||+.|+..+.+ |  .+.
T Consensus       344 ~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~  420 (448)
T PRK04792        344 RLTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA  420 (448)
T ss_pred             EEec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence            4322 22233457899999999876543 3  46667888876543 3222 122345899999988765543 3  477


Q ss_pred             EEeCCCCeeeeeecCCCceeeeeee
Q 005277          573 MWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       573 iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      +++. +|+....+..+.+.+...+|
T Consensus       421 ~~~~-~G~~~~~l~~~~g~~~~p~W  444 (448)
T PRK04792        421 AVSI-DGRFKARLPAGQGEVKSPAW  444 (448)
T ss_pred             EEEC-CCCceEECcCCCCCcCCCcc
Confidence            7786 56666666666666777777

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.33  E-value=1.2e-11  Score=143.36  Aligned_cols=196  Identities=20%  Similarity=0.359  Sum_probs=162.4

Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec-CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI  495 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~  495 (704)
                      ...|-..|.++.=+|...+.+||+.||.|++|....++.+.+++. ....|+.+.|+.+|+-+..+..||.+.+|... .
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            344557788888899999999999999999999999999888863 34789999999999999999999999999997 5


Q ss_pred             ceeEEeccCCCCeeEEEEcCCCCEEEEEE---CCCcEEEEeCCC---CcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC
Q 005277          496 QPLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSS---GECVRIFIGHRSMILSLAMSPDGRYMASGDEDG  569 (704)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs---~dg~I~iwd~~~---~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg  569 (704)
                      ++....+.|......+.|-.  ..+++++   .++.+.+||.--   ..++.  +.|.+.++++++.|..+.|++||.+|
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcC
Confidence            67777778888888888865  5566654   578899999742   23344  68999999999999999999999999


Q ss_pred             eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                      .|++||++..+.+.+++.         +                                  . ...++++|+..|.++|
T Consensus      2359 ~v~l~D~rqrql~h~~~~---------~----------------------------------~-~~~~f~~~ss~g~ikI 2394 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA---------L----------------------------------D-TREYFVTGSSEGNIKI 2394 (2439)
T ss_pred             cEEEeehHHHHHHHHhhh---------h----------------------------------h-hhheeeccCcccceEE
Confidence            999999998887776653         2                                  3 4568999999999999


Q ss_pred             EeCCCCcccccc
Q 005277          650 WDVTTSTKVLKT  661 (704)
Q Consensus       650 Wd~~~~~~~~~~  661 (704)
                      |++.....+...
T Consensus      2395 w~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2395 WRLSEFGLLHTF 2406 (2439)
T ss_pred             EEccccchhhcC
Confidence            999887554443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.33  E-value=3e-11  Score=134.76  Aligned_cols=198  Identities=20%  Similarity=0.335  Sum_probs=159.9

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCC----cCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN----YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~----~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~  497 (704)
                      +.|....+..+...++.++.+..+.+||...+.......+..    .+..-+.++++.-++++|+.-+.|.+|+......
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence            344445555567788888888999999998766555444221    1233345677788999999999999999874443


Q ss_pred             eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE-EeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~-~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                      -..+.+|.+.|..+.|+-+|.++++.|.|.++|+|++.+++... +.-+|...|..++|.|+  .+++++.|-+.++|+.
T Consensus       168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV  245 (967)
T ss_pred             cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence            34678999999999999999999999999999999999988766 55689999999999988  8999999999999975


Q ss_pred             CCCeeeeeecCCC-ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          577 ASGRCVTPLMGHT-SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       577 ~~~~~~~~~~~h~-~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                       .+..+..+.+|. ..++.+..                                  ++....++|++.||.+++|++...
T Consensus       246 -~~~~l~~y~~h~g~~iw~~~~----------------------------------~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  246 -NGTQLEVYDEHSGKGIWKIAV----------------------------------PIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             -ccceehhhhhhhhcceeEEEE----------------------------------cCCceEEEeeccCcchhhhhhhcc
Confidence             455566888886 67888877                                  788889999999999999998764


Q ss_pred             c
Q 005277          656 T  656 (704)
Q Consensus       656 ~  656 (704)
                      .
T Consensus       291 ~  291 (967)
T KOG0974|consen  291 G  291 (967)
T ss_pred             c
Confidence            3

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.32  E-value=1.1e-10  Score=123.35  Aligned_cols=165  Identities=19%  Similarity=0.260  Sum_probs=141.9

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeecC---CcCeeEEEEc--------------------CCCCEEEEEeCCCeE
Q 005277          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGH---NYPVWDVQFN--------------------PQGHYFASSSHDRTA  487 (704)
Q Consensus       431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~v~~s--------------------p~~~~l~sgs~dg~i  487 (704)
                      |...+++..+.||.+++|+...++....|...   .+..++..|.                    .+-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            44678999999999999999988776666431   2333344441                    133567888899999


Q ss_pred             EEEECCCCceeEEec--cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277          488 RIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (704)
Q Consensus       488 ~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg  565 (704)
                      .+|++..++....+.  .|.+.|+++.++.+-..|.+++.|+.+..|+...++.++.+......+.+++++|||..+++|
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            999999998877775  699999999999999999999999999999999999999999999999999999999999988


Q ss_pred             eCCCeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277          566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       566 ~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      +  +.|++||+.+++.+.++.||.++|.++.|
T Consensus       163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f  192 (541)
T KOG4547|consen  163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSF  192 (541)
T ss_pred             c--ceEEEEEccCceEEEEecCCCcceEEEEE
Confidence            6  57999999999999999999999999998

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.32  E-value=3.8e-10  Score=119.27  Aligned_cols=192  Identities=18%  Similarity=0.193  Sum_probs=152.2

Q ss_pred             cCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE------c---
Q 005277          360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF------S---  430 (704)
Q Consensus       360 s~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~------s---  430 (704)
                      .|-+.++|....||.++||+............                         ...-++..++..|      +   
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p-------------------------~~~~s~t~~~~~w~L~~~~s~~k   56 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAP-------------------------IASLSGTCTYTKWGLSADYSPMK   56 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeecc-------------------------chhccCcceeEEEEEEeccchHH
Confidence            34578999999999999999876432211100                         0011122222222      1   


Q ss_pred             -----------CCCCEEEEEeCCCeEEEEeCCCCceeEEee--cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277          431 -----------PLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (704)
Q Consensus       431 -----------p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~  497 (704)
                                 -+...++-|...|.|.+|++..++....+.  .|.++|.++.++.+-..|.+++.|+.+..|+......
T Consensus        57 ~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~  136 (541)
T KOG4547|consen   57 WLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI  136 (541)
T ss_pred             HHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence                       233467889999999999999888877765  6899999999999999999999999999999999999


Q ss_pred             eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC-----CCEEEE-EeCCCeE
Q 005277          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-----GRYMAS-GDEDGTI  571 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd-----g~~l~s-g~~dg~I  571 (704)
                      ++.+......+.+++.+|||..+++++  +.|.+||+.+++.+..|.||.++|++++|.-+     |.++.+ ...+.-|
T Consensus       137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i  214 (541)
T KOG4547|consen  137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI  214 (541)
T ss_pred             eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence            999999999999999999999999986  68999999999999999999999999999887     666554 4455567


Q ss_pred             EEEeCCC
Q 005277          572 MMWDLAS  578 (704)
Q Consensus       572 ~iwdl~~  578 (704)
                      .+|-+..
T Consensus       215 ~~w~v~~  221 (541)
T KOG4547|consen  215 TVWVVEK  221 (541)
T ss_pred             eEEEEEc
Confidence            7786654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=5.5e-10  Score=122.08  Aligned_cols=217  Identities=14%  Similarity=0.134  Sum_probs=136.3

Q ss_pred             CCCCEEEEEEcCCCCEEE---EEeCCCc--EEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          350 THNGLNCASISQDGSLVA---GGFSDSS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~la---sg~~dg~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      ....+.+-+|||||+.++   +...+|.  |.+.++.+..                          ...+..   ..+..
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--------------------------~~~lt~---~~g~~  233 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--------------------------GKKILA---LQGNQ  233 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--------------------------ceEeec---CCCCc
Confidence            445567889999997532   4545555  4455554311                          112222   23445


Q ss_pred             EEEEEcCCCCEEEEEeC-----CCeEEEEeCCCC---ceeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEE--CC
Q 005277          425 YSASFSPLGDFILSSSA-----DTTIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWS--MD  493 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~-----Dg~I~lwd~~~~---~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd--~~  493 (704)
                      ...+|+|||+.|+..+.     +..+.+|++..+   .......++.......+|+|||+.|+..+ .+|...+|.  ++
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~  313 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID  313 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence            56899999998885442     223455777653   22223333333456789999999877665 466555554  43


Q ss_pred             C-CceeEEeccCCCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC--
Q 005277          494 R-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE--  567 (704)
Q Consensus       494 ~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~--  567 (704)
                      . +...+.+..+...+....|+|+|+.|+..+.+   ..|.+||+.+++..... .....+....|+|||++|+..+.  
T Consensus       314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~~  392 (428)
T PRK01029        314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGNS  392 (428)
T ss_pred             ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECCC
Confidence            2 23344444455667889999999999876543   46999999988765443 33445778999999998875433  


Q ss_pred             -CCeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277          568 -DGTIMMWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       568 -dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                       .+.|.+||+.+++..... ...+.+...+|
T Consensus       393 g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~W  422 (428)
T PRK01029        393 NESELYLISLITKKTRKIV-IGSGEKRFPSW  422 (428)
T ss_pred             CCceEEEEECCCCCEEEee-cCCCcccCcee
Confidence             357889999877654333 23344556666

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.30  E-value=4.1e-11  Score=133.65  Aligned_cols=195  Identities=24%  Similarity=0.311  Sum_probs=153.4

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE
Q 005277          357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI  436 (704)
Q Consensus       357 ~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l  436 (704)
                      ..+..+...++.++.+..+.||+...........                    ......    -....-+-++++.-++
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~--------------------~~er~~----l~~~~~~g~s~~~~~i  148 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ--------------------SDERCT----LYSSLIIGDSAEELYI  148 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcC--------------------CCceEE----EEeEEEEeccCcEEEE
Confidence            4555677889999999999999987521110000                    000000    0122234456667789


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE-EeccCCCCeeEEEEcC
Q 005277          437 LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHI  515 (704)
Q Consensus       437 ~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~-~~~~~~~~V~~v~~~p  515 (704)
                      ++|+.-+.|.+|+......-..+.+|.+.|.++.|+-+|+++++.|.|+++|+|++++.+... ..-+|...|..++|+|
T Consensus       149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~  228 (967)
T KOG0974|consen  149 ASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP  228 (967)
T ss_pred             EeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc
Confidence            999999999999998444444688999999999999999999999999999999999987766 5668999999999999


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC-CEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          516 NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       516 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                      +  ++++++.|-++++|+. .+..+..+.+|.+ .|..++..++...+++++.||.+++||+..
T Consensus       229 n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  229 N--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             c--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            8  9999999999999976 4555557888865 689999999999999999999999999764

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.29  E-value=2.5e-10  Score=112.89  Aligned_cols=203  Identities=19%  Similarity=0.356  Sum_probs=157.0

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      -..+++++.++++...|.+|..+|++.-+.+...-                        .+....+.+..|.+.|..+-|
T Consensus        67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf------------------------nkm~~~r~~~~h~~~v~~~if  122 (404)
T KOG1409|consen   67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF------------------------NKMTFLKDYLAHQARVSAIVF  122 (404)
T ss_pred             CCCCceEeeeeccceEEEEEEecceEEEEEhhhhh------------------------hhcchhhhhhhhhcceeeEEe
Confidence            45678999999999999999999999998876411                        112344566789999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeEEeccCCCC
Q 005277          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQPLRIMAGHLSD  507 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~--~~~~~~~~~~~~~~  507 (704)
                      +-...++++.+.|..+.---.+.+..+..|.- ..+.+++.+.-.  +...|...|.+.+..+.  ...++..+.+|.+.
T Consensus       123 ~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~  199 (404)
T KOG1409|consen  123 SLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE  199 (404)
T ss_pred             cCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccc
Confidence            99999999999998776555666655544432 112222222212  56667777777766553  45678889999999


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE-EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (704)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~  579 (704)
                      +.+++|.|....+++|..|..|.+||+.-++- .....+|...|..++..+--+.+++++.||.|.+|++...
T Consensus       200 ~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  200 VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            99999999999999999999999999975433 3456689999999999888899999999999999998754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.29  E-value=1.3e-08  Score=108.58  Aligned_cols=248  Identities=15%  Similarity=0.220  Sum_probs=161.0

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          349 NTHNGLNCASISQDGSLVAGGFS----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~----dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      ........++++|++++|.+...    +|.|..|.+.....                        ...............
T Consensus        34 ~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g------------------------~L~~~~~~~~~g~~p   89 (345)
T PF10282_consen   34 AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG------------------------TLTLLNSVPSGGSSP   89 (345)
T ss_dssp             EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT------------------------EEEEEEEEEESSSCE
T ss_pred             cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc------------------------eeEEeeeeccCCCCc
Confidence            34555677889999999988876    57899998875210                        011111111122344


Q ss_pred             EEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEE----ee----------cCCcCeeEEEEcCCCCEEEEEe-CCCeEE
Q 005277          425 YSASFSPLGDFILSSS-ADTTIRLWSTKLNANLVC----YK----------GHNYPVWDVQFNPQGHYFASSS-HDRTAR  488 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s-~Dg~I~lwd~~~~~~~~~----~~----------~h~~~V~~v~~sp~~~~l~sgs-~dg~i~  488 (704)
                      ..++++|++++|+++. .+|+|.++++.....+..    +.          .......++.|+|+|+++++.. ....|.
T Consensus        90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~  169 (345)
T PF10282_consen   90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY  169 (345)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence            5799999999999876 589999999987432221    11          1124577899999999888765 446799


Q ss_pred             EEECCCCc--ee--EEe-ccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCC--CCcE--EEEeec----C--CCCEEE
Q 005277          489 IWSMDRIQ--PL--RIM-AGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS--SGEC--VRIFIG----H--RSMILS  552 (704)
Q Consensus       489 lwd~~~~~--~~--~~~-~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~--~~~~--~~~~~~----h--~~~i~~  552 (704)
                      +|+++...  ..  ..+ ......-..+.|+|+++++++.. .+++|.++++.  ++..  +.....    .  ......
T Consensus       170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  249 (345)
T PF10282_consen  170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE  249 (345)
T ss_dssp             EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred             EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence            99997654  21  122 23445678999999999987765 57789999988  4432  222211    1  125789


Q ss_pred             EEEecCCCEEEEEe-CCCeEEEEeCC--CCe--eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277          553 LAMSPDGRYMASGD-EDGTIMMWDLA--SGR--CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY  627 (704)
Q Consensus       553 l~~spdg~~l~sg~-~dg~I~iwdl~--~~~--~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (704)
                      |+++|||++|+++. ..+.|.+|++.  +++  .+..+......-..+.+                              
T Consensus       250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~------------------------------  299 (345)
T PF10282_consen  250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF------------------------------  299 (345)
T ss_dssp             EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE------------------------------
T ss_pred             EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE------------------------------
Confidence            99999999988765 56789999983  232  22333322333455666                              


Q ss_pred             ecccCCCCCEEEEEe-CCCcEEEEeCCC
Q 005277          628 FGCASCEGSLLASGS-ADCTVKLWDVTT  654 (704)
Q Consensus       628 ~~~~s~~g~~lasgs-~Dg~V~iWd~~~  654 (704)
                          +|+|++|+++. .++.|.+|++..
T Consensus       300 ----s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  300 ----SPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             -----TTSSEEEEEETTTTEEEEEEEET
T ss_pred             ----eCCCCEEEEEecCCCeEEEEEEeC
Confidence                99999998776 567999998853

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.26  E-value=6.1e-10  Score=110.16  Aligned_cols=247  Identities=17%  Similarity=0.276  Sum_probs=182.6

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      +.+|.+.|+....-|...-+.+.+.|.+++||--....                          .........-..++++
T Consensus        20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~--------------------------q~wpsI~~~mP~~~~~   73 (404)
T KOG1409|consen   20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSG--------------------------QYWPSIYHYMPSPCSA   73 (404)
T ss_pred             hcCchhhhhhheeccCCCCeEEccccceeeeEEecccc--------------------------ccCchhhhhCCCCceE
Confidence            45777778888887877789999999999999643211                          0111122234578999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCC----CCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTK----LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~----~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~  502 (704)
                      +.+.++...|+.|-..|++.-+.+.    .....+.+..|..+|..+-|+....++++.+.|..+.---.+.+..+..+.
T Consensus        74 ~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~  153 (404)
T KOG1409|consen   74 MEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN  153 (404)
T ss_pred             eeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE
Confidence            9999999999999999999988654    345567778899999999999999999999998877655555554443222


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC--CCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS--SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      - ....+++.+.-.  +.+.|...|.|.+-.+.  .-..+..+.+|.+.+++++|.|..+.|.+|..|..+.+||+...+
T Consensus       154 ~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~  230 (404)
T KOG1409|consen  154 F-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK  230 (404)
T ss_pred             e-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc
Confidence            1 011111111111  55667667776665543  456778899999999999999999999999999999999997654


Q ss_pred             e-eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          581 C-VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       581 ~-~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                      - ...+.+|...|..+..                                  -+--+.+++++.||.|.+|+++...
T Consensus       231 g~~~el~gh~~kV~~l~~----------------------------------~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  231 GTAYELQGHNDKVQALSY----------------------------------AQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             ceeeeeccchhhhhhhhh----------------------------------hhhheeeeeccCCCeEEEEecccee
Confidence            3 4567889988888876                                  5556789999999999999987644

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=3e-09  Score=111.68  Aligned_cols=264  Identities=16%  Similarity=0.271  Sum_probs=166.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      ....+..++|++|+++|.+ .+..|+|++.....                           ...+.   -...++++.|+
T Consensus        34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~---------------------------~~lt~---~~~~~~~L~fS   82 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLK---------------------------VVLCV---ELKKTYDLLFS   82 (566)
T ss_pred             CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCc---------------------------EEEEe---ccceeeeeeec
Confidence            3446788999999998887 57789999876521                           11111   11268999999


Q ss_pred             CCCCEEEEE-----eCC-----CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277          431 PLGDFILSS-----SAD-----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (704)
Q Consensus       431 p~~~~l~s~-----s~D-----g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~  500 (704)
                      |-+.+|.+-     ..+     -.+.+|++.++.....+......-|+..|++|..+.+-- ..+.+.+|++...+.+..
T Consensus        83 P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~  161 (566)
T KOG2315|consen   83 PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH  161 (566)
T ss_pred             ccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceee
Confidence            999988652     222     347799999855554454333334788888887654332 336788888765332211


Q ss_pred             eccCCCCeeEEEEcCC--CCEEEE-----EECCCcEEEEeCCC-------------------------------------
Q 005277          501 MAGHLSDVDCVRWHIN--CNYIAT-----GSSDKTVRLWDVSS-------------------------------------  536 (704)
Q Consensus       501 ~~~~~~~V~~v~~~p~--~~~l~t-----gs~dg~I~iwd~~~-------------------------------------  536 (704)
                       .-|...|+.+.++|.  ...+|+     ++.-+.|+||.+.-                                     
T Consensus       162 -kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdV  240 (566)
T KOG2315|consen  162 -KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDV  240 (566)
T ss_pred             -eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEee
Confidence             123445555555543  122222     22334444444320                                     


Q ss_pred             -------------------CcEEEEeecCCCCEEEEEEecCCCEEEE--EeCCCeEEEEeCCCCeeeeeecCCCceeeee
Q 005277          537 -------------------GECVRIFIGHRSMILSLAMSPDGRYMAS--GDEDGTIMMWDLASGRCVTPLMGHTSCVWTL  595 (704)
Q Consensus       537 -------------------~~~~~~~~~h~~~i~~l~~spdg~~l~s--g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl  595 (704)
                                         |....+--...++|.++.|+|+|+-+++  |-.-.++.|+|++ +.++..+  ..++-.++
T Consensus       241 Dktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~  317 (566)
T KOG2315|consen  241 DKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTA  317 (566)
T ss_pred             cCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccce
Confidence                               2222211234689999999999976554  5677889999986 4555444  24455566


Q ss_pred             eeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCcccccc
Q 005277          596 AYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA---DCTVKLWDVTTSTKVLKTEEKSGTNRLRS  672 (704)
Q Consensus       596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~  672 (704)
                      -|                                  +|.|++|+.+|-   -|.|-|||+.+.+.               
T Consensus       318 ~f----------------------------------np~g~ii~lAGFGNL~G~mEvwDv~n~K~---------------  348 (566)
T KOG2315|consen  318 FF----------------------------------NPHGNIILLAGFGNLPGDMEVWDVPNRKL---------------  348 (566)
T ss_pred             EE----------------------------------CCCCCEEEEeecCCCCCceEEEeccchhh---------------
Confidence            67                                  999999988874   48999999998543               


Q ss_pred             ccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          673 LKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       673 l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                      +..+....  -+-+.|+|||.++.+++..
T Consensus       349 i~~~~a~~--tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  349 IAKFKAAN--TTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             ccccccCC--ceEEEEcCCCcEEEEEecc
Confidence            34443333  3446999999999998754

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.25  E-value=4e-11  Score=139.27  Aligned_cols=197  Identities=14%  Similarity=0.274  Sum_probs=159.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      +-..|.|+.=+|...+.++|+.||.|++|.+....                           ..+..-.+-...|+.+.|
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~---------------------------~v~~~rt~g~s~vtr~~f 2259 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ---------------------------QVVCFRTAGNSRVTRSRF 2259 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCC---------------------------eEEEeeccCcchhhhhhh
Confidence            34568888889999999999999999999986421                           122222233378999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe---CCCeEEEEECCCCc-eeEEeccCC
Q 005277          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS---HDRTARIWSMDRIQ-PLRIMAGHL  505 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs---~dg~i~lwd~~~~~-~~~~~~~~~  505 (704)
                      +.+|+.+..+..||.+.+|... .+.....+.|.....++.|-.  ..+++++   .++.+.+||..-.. .-.+...|.
T Consensus      2260 ~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred             cccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecC
Confidence            9999999999999999999998 677778889999999999974  6677765   67899999975422 112226899


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                      +.++++++-|..+.|++|+.+|.|++||++..+..+.+..         +. ...++++|+..|.|+||++.....+.++
T Consensus      2337 ~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence            9999999999999999999999999999998887776654         33 5678999999999999999888777666


Q ss_pred             c
Q 005277          586 M  586 (704)
Q Consensus       586 ~  586 (704)
                      .
T Consensus      2407 p 2407 (2439)
T KOG1064|consen 2407 P 2407 (2439)
T ss_pred             c
Confidence            4

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=1.9e-09  Score=112.70  Aligned_cols=269  Identities=16%  Similarity=0.211  Sum_probs=184.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (704)
                      =+-+.|||.|.+|++--.-| |.+|-=..                            ...++. ..|. .|.-+.|||+.
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~----------------------------f~r~~R-F~Hp-~Vq~idfSP~E  261 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGES----------------------------FDRIQR-FYHP-GVQFIDFSPNE  261 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCcc----------------------------HHHHHh-ccCC-CceeeecCCcc
Confidence            36789999999999987766 66885222                            011111 1343 58889999999


Q ss_pred             CEEEEEeC-----------CCeEEEEeCCCCceeEEeec--CCcCeeE-EEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277          434 DFILSSSA-----------DTTIRLWSTKLNANLVCYKG--HNYPVWD-VQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       434 ~~l~s~s~-----------Dg~I~lwd~~~~~~~~~~~~--h~~~V~~-v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      +||+|-+.           ...++|||+.+|.....+..  ....+|. +.||.|++|+|.-.. .+|.||+.....++.
T Consensus       262 kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld  340 (698)
T KOG2314|consen  262 KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLD  340 (698)
T ss_pred             ceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeec
Confidence            99998642           25799999999998887765  3344444 589999999998776 679999987755544


Q ss_pred             EeccCCCCeeEEEEcCCCCEEEEEE-----CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe--------
Q 005277          500 IMAGHLSDVDCVRWHINCNYIATGS-----SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--------  566 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs-----~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~--------  566 (704)
                      .-.-..+.|....|+|.++.||.=+     .-..+.+-.+.+++.+++-.-|.-.=..+-|-.+|.+|+.--        
T Consensus       341 ~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~  420 (698)
T KOG2314|consen  341 KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKV  420 (698)
T ss_pred             ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccc
Confidence            3334456788899999999998633     234678888888888887766665556677888898887522        


Q ss_pred             --CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC-
Q 005277          567 --EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA-  643 (704)
Q Consensus       567 --~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~-  643 (704)
                        .-..+-|+.++....--..-.-...|...+|                                  -|.|+.+++-+. 
T Consensus       421 ~g~f~n~eIfrireKdIpve~velke~vi~FaW----------------------------------EP~gdkF~vi~g~  466 (698)
T KOG2314|consen  421 KGQFSNLEIFRIREKDIPVEVVELKESVIAFAW----------------------------------EPHGDKFAVISGN  466 (698)
T ss_pred             cceEeeEEEEEeeccCCCceeeecchheeeeee----------------------------------ccCCCeEEEEEcc
Confidence              1123445555443322111223456666777                                  888887766553 


Q ss_pred             --CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          644 --DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       644 --Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                        ..++.+|.+.+..           ..+.++..+..  ...+.|.|+|.|+++|+++.-
T Consensus       467 ~~k~tvsfY~~e~~~-----------~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~  513 (698)
T KOG2314|consen  467 TVKNTVSFYAVETNI-----------KKPSLVKELDK--KFANTVFWSPKGRFVVVAALV  513 (698)
T ss_pred             ccccceeEEEeecCC-----------Cchhhhhhhcc--cccceEEEcCCCcEEEEEEec
Confidence              3579999888522           12345566654  457889999999999998754

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.24  E-value=1.3e-09  Score=105.76  Aligned_cols=176  Identities=18%  Similarity=0.239  Sum_probs=132.2

Q ss_pred             ccCeEEEEEcC---CCC-EEEEEeCCCeEEEEeCCCCceeEEeecCC------cCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 005277          421 SGPVYSASFSP---LGD-FILSSSADTTIRLWSTKLNANLVCYKGHN------YPVWDVQFNPQGHYFASSSHDRTARIW  490 (704)
Q Consensus       421 ~~~V~~l~~sp---~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~------~~V~~v~~sp~~~~l~sgs~dg~i~lw  490 (704)
                      +..+..+.|..   ++. .++-+..+|.|.++..........+++-.      ....++.|++.+..++++..+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            34566777753   344 46677788999999877555544444321      124578899999999999999999966


Q ss_pred             ECCCCc--eeEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCC-CCcEEEE-eecCCCCEEEEEEec-CCCEEEE
Q 005277          491 SMDRIQ--PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGECVRI-FIGHRSMILSLAMSP-DGRYMAS  564 (704)
Q Consensus       491 d~~~~~--~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~-~~~~~~~-~~~h~~~i~~l~~sp-dg~~l~s  564 (704)
                      +.....  .++..++|........|+. +.+.+.+|+.|+.+..||+| .++.+.. .+.|...|.+|.-+| .+.++++
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T  228 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT  228 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence            655443  3447788999999999985 45799999999999999999 4555544 457888999999887 5789999


Q ss_pred             EeCCCeEEEEeCC-CCeeeeeecCCCceeeeeee
Q 005277          565 GDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       565 g~~dg~I~iwdl~-~~~~~~~~~~h~~~V~sl~~  597 (704)
                      |+.|-.|++||.+ .++++..-. -.+.||.+.+
T Consensus       229 GsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~  261 (339)
T KOG0280|consen  229 GSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKH  261 (339)
T ss_pred             eccccceeeeehhcccCccccCc-cccceEEEEe
Confidence            9999999999998 566665443 3478998888

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.23  E-value=7.7e-10  Score=107.35  Aligned_cols=223  Identities=16%  Similarity=0.165  Sum_probs=151.5

Q ss_pred             CCCEEEEEEcC---CCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          351 HNGLNCASISQ---DGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       351 ~~~V~~~~fs~---dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      +..+..+.|+-   +|. .++-+-.+|.|.++..............                      ....-......+
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~l----------------------s~~ki~~~~~ls  126 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGL----------------------SSKKISVVEALS  126 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeeccc----------------------chhhhhheeeeE
Confidence            34456666652   455 5666677888888876542111110000                      000000013467


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCce--eEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeEE-e
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ-PLRI-M  501 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~-~~~~-~  501 (704)
                      +.|++.+..++++-.+|.+.+-+......  ++..+.|..++|...|+. +.+.+.+|+.|+.+..||++... .+.. .
T Consensus       127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~  206 (339)
T KOG0280|consen  127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS  206 (339)
T ss_pred             EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence            88999999999999999998665554433  447889999999999987 55789999999999999999332 2222 3


Q ss_pred             ccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCC-CCcEEEEeecCCCCEEEEEEecC--CCEEEEEeCCCeEEEEeCC
Q 005277          502 AGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPD--GRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       502 ~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~h~~~i~~l~~spd--g~~l~sg~~dg~I~iwdl~  577 (704)
                      ..|...|.++.-+| .+.+|+||+.|-.|++||.| -++++..- .-.+.|..+.++|.  ++.|+++-..| .+|-+..
T Consensus       207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~  284 (339)
T KOG0280|consen  207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSS  284 (339)
T ss_pred             eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcC-ceEEEec
Confidence            46888999998885 68899999999999999999 46666543 23478999999994  44555555555 5666665


Q ss_pred             CC--e---eeeeecCCCceeeeeee
Q 005277          578 SG--R---CVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       578 ~~--~---~~~~~~~h~~~V~sl~~  597 (704)
                      .+  +   .......|.+-++.-.|
T Consensus       285 ~~~~e~~~~~~s~~~hdSl~YG~DW  309 (339)
T KOG0280|consen  285 DKVLEFQIVLPSDKIHDSLCYGGDW  309 (339)
T ss_pred             ccccchheeeeccccccceeecccc
Confidence            43  2   33444667777777777

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.22  E-value=1.9e-11  Score=126.59  Aligned_cols=175  Identities=22%  Similarity=0.329  Sum_probs=137.3

Q ss_pred             ceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL-------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (704)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~-------~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg  485 (704)
                      ....+.||...|..++--.+.+.+++++.|++|++|.++.       ..+..+|..|+.+|.++.|-.+.++++++  ||
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            4566889999999988877788899999999999999863       34678899999999999999998888775  78


Q ss_pred             eEEEEECCCCceeEEec--cCCCCeeEEEEcCC--CCEEEEE-ECCCcEEEEeCCCCcEEEEee-----cCCCCEEEEEE
Q 005277          486 TARIWSMDRIQPLRIMA--GHLSDVDCVRWHIN--CNYIATG-SSDKTVRLWDVSSGECVRIFI-----GHRSMILSLAM  555 (704)
Q Consensus       486 ~i~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~--~~~l~tg-s~dg~I~iwd~~~~~~~~~~~-----~h~~~i~~l~~  555 (704)
                      .+.+||.-.++++..+.  ...+.+..+..-|+  ..++..| +...+|+++|.+.+.-+..++     +.++.+.+++.
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            99999987776665332  22233444444443  3444444 678999999999876554443     44567899999


Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCC
Q 005277          556 SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT  589 (704)
Q Consensus       556 spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~  589 (704)
                      .|.|+++++|-..|+|.+.|.++|+.+..++.-.
T Consensus       885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpme  918 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPME  918 (1034)
T ss_pred             ccCcchhhHHhcCCcEEEEecCCCceeccCCccc
Confidence            9999999999999999999999999888776443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.20  E-value=5.2e-10  Score=108.93  Aligned_cols=213  Identities=21%  Similarity=0.348  Sum_probs=147.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC----------
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH----------  420 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----------  420 (704)
                      .+.|+++.|...|.+||+|...|.|.+|.-.....                       -..+..+.+++|          
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~-----------------------ceykf~teFQshe~EFDYLkSl   82 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG-----------------------CEYKFFTEFQSHELEFDYLKSL   82 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccc-----------------------cchhhhhhhcccccchhhhhhc
Confidence            35689999999999999999999999997543110                       001122333444          


Q ss_pred             --ccCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCc-------------------e----------------------
Q 005277          421 --SGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNA-------------------N----------------------  455 (704)
Q Consensus       421 --~~~V~~l~~sp~~~--~l~s~s~Dg~I~lwd~~~~~-------------------~----------------------  455 (704)
                        ...|..+.|..++.  .++..+.|.+|++|.+....                   .                      
T Consensus        83 eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~  162 (460)
T COG5170          83 EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK  162 (460)
T ss_pred             cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec
Confidence              24678889877653  46667789999999865220                   0                      


Q ss_pred             -eEEe-ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce---eEEeccCC-----CCeeEEEEcCC-CCEEEEEE
Q 005277          456 -LVCY-KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---LRIMAGHL-----SDVDCVRWHIN-CNYIATGS  524 (704)
Q Consensus       456 -~~~~-~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~---~~~~~~~~-----~~V~~v~~~p~-~~~l~tgs  524 (704)
                       .+.+ ..|...|.++.|+.+...++++ .|=.|.+|+++-...   +..+..|.     .-|++..|||. ++.+...+
T Consensus       163 p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs  241 (460)
T COG5170         163 PCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS  241 (460)
T ss_pred             cceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec
Confidence             0112 3577889999999888888776 567899999875332   22233343     35788999995 67788888


Q ss_pred             CCCcEEEEeCCCCcEE----------------EEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC-eeeeeecC
Q 005277          525 SDKTVRLWDVSSGECV----------------RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMG  587 (704)
Q Consensus       525 ~dg~I~iwd~~~~~~~----------------~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~-~~~~~~~~  587 (704)
                      +.|.|++-|+|.....                .-|.+-...|..+.|+++|+++++-+. -+|+|||.+.. .++.++.-
T Consensus       242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~  320 (460)
T COG5170         242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM  320 (460)
T ss_pred             CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech
Confidence            9999999999843211                112233457889999999999987765 47999999864 56666655


Q ss_pred             C
Q 005277          588 H  588 (704)
Q Consensus       588 h  588 (704)
                      |
T Consensus       321 h  321 (460)
T COG5170         321 H  321 (460)
T ss_pred             H
Confidence            5

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.18  E-value=6.1e-08  Score=97.49  Aligned_cols=243  Identities=12%  Similarity=0.163  Sum_probs=166.3

Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCC--Ccee--EEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEE
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKL--NANL--VCYKGHNYPVWDVQFNPQGHYFASSS-HDRTAR  488 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~---Dg~I~lwd~~~--~~~~--~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~  488 (704)
                      +..+.+.++-|+|+|++++|.++-.   +|.|..|.++.  |...  ........+-+.++++++|++++++. ..|.|.
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            3456678889999999999998754   47788877774  3321  11112233447899999999998886 568999


Q ss_pred             EEECCC-Ccee--EEeccCCCC----------eeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCcEEEEe---ecCCCCEE
Q 005277          489 IWSMDR-IQPL--RIMAGHLSD----------VDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIF---IGHRSMIL  551 (704)
Q Consensus       489 lwd~~~-~~~~--~~~~~~~~~----------V~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~~---~~h~~~i~  551 (704)
                      ++-++. +...  .....|.+.          +.+..+.|++++|++.+- --.|.+|++..|+....-   .......+
T Consensus       115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR  194 (346)
T COG2706         115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR  194 (346)
T ss_pred             EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence            999865 3221  112234444          788999999999998752 346999999977654321   13445678


Q ss_pred             EEEEecCCCEEEEEe-CCCeEEEEeCCCC-eeeeeecCC-------Cceeeeeeeeeeehccccccccccccccceeeee
Q 005277          552 SLAMSPDGRYMASGD-EDGTIMMWDLASG-RCVTPLMGH-------TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYS  622 (704)
Q Consensus       552 ~l~~spdg~~l~sg~-~dg~I~iwdl~~~-~~~~~~~~h-------~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (704)
                      .|.|+|+|++.++.+ -+++|.+|..... ..+..++.+       .+..++.+.+                        
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh------------------------  250 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH------------------------  250 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE------------------------
Confidence            999999999887765 5889999998773 233333221       2222222221                        


Q ss_pred             eeEEeecccCCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          623 LTIIYFGCASCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       623 ~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                              ++++|++|.++. ....|.+|.+......           +..+...+++...-..+.|++.|.+|+++.-+
T Consensus       251 --------is~dGrFLYasNRg~dsI~~f~V~~~~g~-----------L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~  311 (346)
T COG2706         251 --------ISPDGRFLYASNRGHDSIAVFSVDPDGGK-----------LELVGITPTEGQFPRDFNINPSGRFLIAANQK  311 (346)
T ss_pred             --------ECCCCCEEEEecCCCCeEEEEEEcCCCCE-----------EEEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence                    199999998775 3458889988765432           23455666677767899999999999998876


Q ss_pred             C
Q 005277          702 K  702 (704)
Q Consensus       702 g  702 (704)
                      +
T Consensus       312 s  312 (346)
T COG2706         312 S  312 (346)
T ss_pred             C
Confidence            5

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=2.5e-10  Score=118.46  Aligned_cols=226  Identities=15%  Similarity=0.235  Sum_probs=165.4

Q ss_pred             CCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec
Q 005277          338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (704)
Q Consensus       338 ~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (704)
                      .+..+....|.+|.+.|..++--.+.+-+++++.|.+|++|++...+...                     +...+..++
T Consensus       722 n~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~---------------------~tsaCQfTY  780 (1034)
T KOG4190|consen  722 NFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI---------------------GTSACQFTY  780 (1034)
T ss_pred             ccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc---------------------ccceeeeEh
Confidence            44555566788999999998877777889999999999999997522111                     112355678


Q ss_pred             cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--cCCcCeeEEEEcC--CCCEEEEE-eCCCeEEEEEC
Q 005277          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNP--QGHYFASS-SHDRTARIWSM  492 (704)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~v~~sp--~~~~l~sg-s~dg~i~lwd~  492 (704)
                      ..|+.+|.++-|..+.++++++  ||.|.+||.--+..+..+.  ...+.+..+..-|  +...++.| +...+|+++|.
T Consensus       781 ~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~Da  858 (1034)
T KOG4190|consen  781 QAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDA  858 (1034)
T ss_pred             hhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeec
Confidence            8999999999999988887765  7889999987776654332  1223344444444  34444444 68899999999


Q ss_pred             CCCceeEEec-----cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          493 DRIQPLRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       493 ~~~~~~~~~~-----~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      +.......++     +...-+.|++..|.|+++++|-++|+|.+.|.++|+.+..+.........++- |..+.|+....
T Consensus       859 Rsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sal  937 (1034)
T KOG4190|consen  859 RSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSAL  937 (1034)
T ss_pred             ccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcc
Confidence            9877654443     44466899999999999999999999999999999998877665555544443 45667888888


Q ss_pred             CCeEEE-EeCCCCeeeeeecC
Q 005277          568 DGTIMM-WDLASGRCVTPLMG  587 (704)
Q Consensus       568 dg~I~i-wdl~~~~~~~~~~~  587 (704)
                      |.++.+ |-.-.|....+.+.
T Consensus       938 dHslaVnWhaldgimh~q~kp  958 (1034)
T KOG4190|consen  938 DHSLAVNWHALDGIMHLQDKP  958 (1034)
T ss_pred             cceeEeeehhcCCeeeeccCC
Confidence            888888 88766655444443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.11  E-value=5.7e-08  Score=116.87  Aligned_cols=264  Identities=14%  Similarity=0.184  Sum_probs=158.8

Q ss_pred             EEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC
Q 005277          356 CASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD  434 (704)
Q Consensus       356 ~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  434 (704)
                      .++++++ +.++++-+.++.|++||...........  .+.....        .+..     -.++-....++++.++++
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~--~g~~G~~--------dG~~-----~~a~f~~P~GIavd~~gn  636 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS--TGEEGLR--------DGSF-----EDATFNRPQGLAYNAKKN  636 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc--CCCcCCC--------CCch-----hccccCCCcEEEEeCCCC
Confidence            4678764 6677777888999999976421111000  0000000        0000     001223457899999888


Q ss_pred             EEEEE-eCCCeEEEEeCCCCceeEEeecC-----------------CcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 005277          435 FILSS-SADTTIRLWSTKLNANLVCYKGH-----------------NYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI  495 (704)
Q Consensus       435 ~l~s~-s~Dg~I~lwd~~~~~~~~~~~~h-----------------~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~  495 (704)
                      .|+.+ +..+.|+++|..++. +.++.+-                 -...++++|+| ++..+++.+.++.|++||..++
T Consensus       637 ~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g  715 (1057)
T PLN02919        637 LLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG  715 (1057)
T ss_pred             EEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC
Confidence            66655 445789999987654 3333210                 11346899999 5667777778899999998775


Q ss_pred             ceeEEeccC---------------CCCeeEEEEcCCCCEEE-EEECCCcEEEEeCCCCcEEEEeec-------------C
Q 005277          496 QPLRIMAGH---------------LSDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGECVRIFIG-------------H  546 (704)
Q Consensus       496 ~~~~~~~~~---------------~~~V~~v~~~p~~~~l~-tgs~dg~I~iwd~~~~~~~~~~~~-------------h  546 (704)
                      ... .+.+.               ......|+++|+++.|+ +.+.++.|++||+.++.......+             +
T Consensus       716 ~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~  794 (1057)
T PLN02919        716 VTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDH  794 (1057)
T ss_pred             eEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCC
Confidence            432 22211               12345799999998555 445678999999987653221100             0


Q ss_pred             --------CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccce
Q 005277          547 --------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGF  618 (704)
Q Consensus       547 --------~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~  618 (704)
                              -....+++++++|..+++-..++.|++||..++.... +.+....-    +.      ++.      ...+.
T Consensus       795 dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G----~~------dG~------~~~a~  857 (1057)
T PLN02919        795 DGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAG----FK------DGK------ALKAQ  857 (1057)
T ss_pred             CCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcC----CC------CCc------ccccc
Confidence                    1134689999999988888899999999998776543 22211000    00      000      00000


Q ss_pred             eeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          619 LFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       619 ~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      .    ..+.-.+++++|+++++-+.+++|++||+.++..
T Consensus       858 l----~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        858 L----SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             c----CCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            0    0011112288999999999999999999988754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.11  E-value=4.6e-08  Score=115.46  Aligned_cols=203  Identities=15%  Similarity=0.203  Sum_probs=139.1

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      ..+.|.++.+-++...++.+..+|.|.+...+...                         ..........-.+.|.+++|
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~-------------------------~~~~~E~VG~vd~GI~a~~W  128 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDP-------------------------DEDEIEIVGSVDSGILAASW  128 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCC-------------------------CCceeEEEEEEcCcEEEEEE
Confidence            34679999999999999999999999998433200                         01111222224578999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCC---------------C--------CceeEEeec------------------------C
Q 005277          430 SPLGDFILSSSADTTIRLWSTK---------------L--------NANLVCYKG------------------------H  462 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~---------------~--------~~~~~~~~~------------------------h  462 (704)
                      |||+..|+..+.++++.+.+..               .        |+.-..|+|                        +
T Consensus       129 SPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~  208 (928)
T PF04762_consen  129 SPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSW  208 (928)
T ss_pred             CCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCcccc
Confidence            9999999999989998886532               0        011111111                        1


Q ss_pred             CcCeeEEEEcCCCCEEEEEeC------CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEe
Q 005277          463 NYPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWD  533 (704)
Q Consensus       463 ~~~V~~v~~sp~~~~l~sgs~------dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~I~iwd  533 (704)
                      ...-..|+|-.||.|||+.+.      -+.++||+-+ +.....-..-.+--.+++|.|+|++||+...   ...|.+|.
T Consensus       209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE  287 (928)
T PF04762_consen  209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE  287 (928)
T ss_pred             CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence            223457899999999999874      2689999876 3333332222233457899999999998764   34566776


Q ss_pred             CCCCcEEEEee----cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          534 VSSGECVRIFI----GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       534 ~~~~~~~~~~~----~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                       ++|-....|.    .....|..+.|++|+..||....|. |.+|-..+..
T Consensus       288 -rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  288 -RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             -cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence             4555444443    3356899999999999999987665 9999988764

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.10  E-value=3.2e-09  Score=105.05  Aligned_cols=230  Identities=21%  Similarity=0.316  Sum_probs=152.9

Q ss_pred             eCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCc----ccccCCCC---Cccce-eecc
Q 005277          349 NTHNGLNCASISQDG--SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPR----EDIIGPNG---RKRSY-TLYQ  418 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg--~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~-~~~~  418 (704)
                      .-...|+.+.|.+++  ..++..+.|.+|++|.+................+....    .....+..   ...+. ..-.
T Consensus        82 eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aN  161 (433)
T KOG1354|consen   82 EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYAN  161 (433)
T ss_pred             hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccc
Confidence            334567888888764  45667779999999998754322211000000000000    00000000   00111 1235


Q ss_pred             CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeecCC-----cCeeEEEEcC-CCCEEEEEeCCCeEEE
Q 005277          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHN-----YPVWDVQFNP-QGHYFASSSHDRTARI  489 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~---~~~~~~~h~-----~~V~~v~~sp-~~~~l~sgs~dg~i~l  489 (704)
                      +|+--|++++++.|...++++. |-.|.+|+++-..   .++.++.+.     .-|++-.|+| ..+.|+-.+..|+|++
T Consensus       162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            7899999999999999888775 6789999987432   244455543     4588899999 5677888889999999


Q ss_pred             EECCCCcee----------------EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC-CCCcEEEEeecCCC----
Q 005277          490 WSMDRIQPL----------------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV-SSGECVRIFIGHRS----  548 (704)
Q Consensus       490 wd~~~~~~~----------------~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~-~~~~~~~~~~~h~~----  548 (704)
                      .|++.....                .-|.+-.+.|..+.|+++|+|+++-+ --+|++||+ ...+++.++.-|..    
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~k  319 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSK  319 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHH
Confidence            999842211                11223335688899999999999864 368999999 46677777765532    


Q ss_pred             --------C---EEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          549 --------M---ILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       549 --------~---i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                              .   -..++|+.++.++++|+....++++++..|.
T Consensus       320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence                    1   2457899999999999999999999976654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.08  E-value=1.5e-08  Score=105.24  Aligned_cols=283  Identities=14%  Similarity=0.161  Sum_probs=183.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      .-++..++|||.|.+|++....| |.+|.-....                           ...+ + -| ..|+.+.|+
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~---------------------------~l~~-~-~~-~~V~~~~fS   80 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKA---------------------------KLVR-F-RH-PDVKYLDFS   80 (561)
T ss_pred             CcchhheeecCcchheehhhccc-eEEccccchh---------------------------heee-e-ec-CCceecccC
Confidence            44688899999999999886555 7788744311                           1111 1 12 468999999


Q ss_pred             CCCCEEEEEeCCC---------------eEEEEeCCCCceeEEeecCCcC--ee-EEEEcCCCCEEEEEeCCCeEEEEEC
Q 005277          431 PLGDFILSSSADT---------------TIRLWSTKLNANLVCYKGHNYP--VW-DVQFNPQGHYFASSSHDRTARIWSM  492 (704)
Q Consensus       431 p~~~~l~s~s~Dg---------------~I~lwd~~~~~~~~~~~~h~~~--V~-~v~~sp~~~~l~sgs~dg~i~lwd~  492 (704)
                      |.++||.+-+..+               .+.+||+.++..+..+.....+  .| -+.|+-+..|+|-. ....+.|+++
T Consensus        81 P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~  159 (561)
T COG5354          81 PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI  159 (561)
T ss_pred             cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec
Confidence            9999999875543               4999999999999998877766  77 78999988887655 3467999996


Q ss_pred             -CCCceeEEeccCCCCeeEEEEcCC--CCEEEE-----EECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277          493 -DRIQPLRIMAGHLSDVDCVRWHIN--CNYIAT-----GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       493 -~~~~~~~~~~~~~~~V~~v~~~p~--~~~l~t-----gs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s  564 (704)
                       .+..+.-.-.-....|....|+|.  +..|++     ++.++.+++|.+..+..+.+-.-....-..+.|.+.|.+|.+
T Consensus       160 t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~  239 (561)
T COG5354         160 TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLV  239 (561)
T ss_pred             CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEE
Confidence             221111111112356788889985  344554     567889999999877766554333334457889999988764


Q ss_pred             Ee-----------CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277          565 GD-----------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC  633 (704)
Q Consensus       565 g~-----------~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  633 (704)
                      --           ....+.|+++.. +-+.....-.++|....|                                  .|
T Consensus       240 l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W----------------------------------~p  284 (561)
T COG5354         240 LVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTW----------------------------------EP  284 (561)
T ss_pred             EEEEeeecccceeccceEEEEeecc-cccceeccccccceeeee----------------------------------cc
Confidence            21           235688888763 333333355789999999                                  88


Q ss_pred             CCCEEEEE--eCCCcEEEEeCCCCcccccccc-cc------CccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          634 EGSLLASG--SADCTVKLWDVTTSTKVLKTEE-KS------GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       634 ~g~~lasg--s~Dg~V~iWd~~~~~~~~~~~~-~~------~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      .++.+++.  -.+-++.++|+...- .....+ +.      .......++.+....+.  ...|+|-|+++++|..+++
T Consensus       285 ~S~~F~vi~g~~pa~~s~~~lr~Nl-~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gn--i~i~~~~~rf~~~~~~~~~  360 (561)
T COG5354         285 LSSRFAVISGYMPASVSVFDLRGNL-RFYFPEQKRNTIFFSPHERYILFAGFDNLQGN--IEIFDPAGRFKVAGAFNGL  360 (561)
T ss_pred             cCCceeEEecccccceeecccccce-EEecCCcccccccccCcccEEEEecCCccccc--eEEeccCCceEEEEEeecC
Confidence            87766544  477889999987752 111111 00      01111222223333333  3467777777777766654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=2.6e-09  Score=114.30  Aligned_cols=238  Identities=12%  Similarity=0.122  Sum_probs=170.5

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---------------eEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---------------LVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~---------------~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg  485 (704)
                      .....|++|+....++++|+.||.+++..+.+...               -+++.||...|.-+.|+.+.+.+-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            35678999999999999999999999998765321               245678999999999999999999999999


Q ss_pred             eEEEEECCCCceeEEe--ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEE
Q 005277          486 TARIWSMDRIQPLRIM--AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA  563 (704)
Q Consensus       486 ~i~lwd~~~~~~~~~~--~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~  563 (704)
                      .|.+|-+-.++-...+  ....+.|.+++|+.+|..|+....||.|.+=.+...+ +.--.-.......+.|++|.+.+.
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQAL  172 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecccHHHHH
Confidence            9999998776543322  2355779999999999999999999998777664332 221111122345789999999988


Q ss_pred             EEeCCCeEEEEeCCCCeeeeee------------cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeeccc
Q 005277          564 SGDEDGTIMMWDLASGRCVTPL------------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA  631 (704)
Q Consensus       564 sg~~dg~I~iwdl~~~~~~~~~------------~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  631 (704)
                      .+-..|.++++|.... ....+            ......+..+.|.....                          ...
T Consensus       173 f~~ange~hlydnqgn-F~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~--------------------------~~v  225 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGN-FERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY--------------------------QPV  225 (1189)
T ss_pred             hhhcCCcEEEeccccc-HHHhhhhceEEeeeeeecCCCccccceeeccCcc--------------------------ccC
Confidence            8889999999996532 11111            11112233444411100                          011


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          632 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       632 s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      .|+...++.+-..|.+.|-.-.+...+.                +-.....|....|+++|.+||+++.+.
T Consensus       226 ~pdrP~lavcy~nGr~QiMR~eND~~Pv----------------v~dtgm~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  226 PPDRPRLAVCYANGRMQIMRSENDPEPV----------------VVDTGMKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             CCCCCEEEEEEcCceehhhhhcCCCCCe----------------EEecccEeecceecCCCcEEEEccCcc
Confidence            5688899999999999998766544321                112235688899999999999998764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.07  E-value=6.9e-07  Score=90.05  Aligned_cols=250  Identities=12%  Similarity=0.194  Sum_probs=161.9

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          349 NTHNGLNCASISQDGSLVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~---dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      .+.+..+-++|+|++++|.++-.   +|.|-.|.++.......                      ........+  .+-.
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt----------------------~ln~~~~~g--~~p~   92 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT----------------------FLNRQTLPG--SPPC   92 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE----------------------EeeccccCC--CCCe
Confidence            34455677899999988887755   47788888775211000                      000011112  2237


Q ss_pred             EEEEcCCCCEEEEEeC-CCeEEEEeCCCCcee---EEeecCCcC----------eeEEEEcCCCCEEEEEe-CCCeEEEE
Q 005277          426 SASFSPLGDFILSSSA-DTTIRLWSTKLNANL---VCYKGHNYP----------VWDVQFNPQGHYFASSS-HDRTARIW  490 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~-Dg~I~lwd~~~~~~~---~~~~~h~~~----------V~~v~~sp~~~~l~sgs-~dg~i~lw  490 (704)
                      .+++++++++|+++.. -|.|.++-++....+   .....|.++          +....+.|+++++++.+ .--.|.+|
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y  172 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence            8999999999998764 588999988653222   222235444          88999999999999886 23468999


Q ss_pred             ECCCCceeEEe---ccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCC-cEEEEeec---------CCCCEEEEEEe
Q 005277          491 SMDRIQPLRIM---AGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG-ECVRIFIG---------HRSMILSLAMS  556 (704)
Q Consensus       491 d~~~~~~~~~~---~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~-~~~~~~~~---------h~~~i~~l~~s  556 (704)
                      +++.+.....-   ......-..|.|||++++..+.+ -+++|-+|..... ..+..++.         ...+...|.++
T Consensus       173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis  252 (346)
T COG2706         173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS  252 (346)
T ss_pred             EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence            99866533211   13445678899999999987765 5899999998763 22222211         23467889999


Q ss_pred             cCCCEEEEEeC-CCeEEEEeCCC--Cee--eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeeccc
Q 005277          557 PDGRYMASGDE-DGTIMMWDLAS--GRC--VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA  631 (704)
Q Consensus       557 pdg~~l~sg~~-dg~I~iwdl~~--~~~--~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  631 (704)
                      |||++|+++.. ...|.+|.+..  +++  +.....+...-....+                                  
T Consensus       253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i----------------------------------  298 (346)
T COG2706         253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNI----------------------------------  298 (346)
T ss_pred             CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcccee----------------------------------
Confidence            99999988642 23677776643  322  1122223333344444                                  


Q ss_pred             CCCCCEEEEEeCC-CcEEEEeCCCCc
Q 005277          632 SCEGSLLASGSAD-CTVKLWDVTTST  656 (704)
Q Consensus       632 s~~g~~lasgs~D-g~V~iWd~~~~~  656 (704)
                      ++.|++|++++.+ ..|.+|.++...
T Consensus       299 ~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         299 NPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             CCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            8899999888754 579999887644

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.06  E-value=2e-07  Score=110.23  Aligned_cols=338  Identities=13%  Similarity=0.099  Sum_probs=183.1

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCC--------CCCc-ccccCCCCCc--------
Q 005277          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND--------TTPR-EDIIGPNGRK--------  411 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~--------  411 (704)
                      .-..+|.|++||||+.+||..+.+|+|.+-+-+- .............+        .... ...-+..++.        
T Consensus       118 ~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f-d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p  196 (928)
T PF04762_consen  118 SVDSGILAASWSPDEELLALVTGEGNLLLMTRDF-DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP  196 (928)
T ss_pred             EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc-eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC
Confidence            4467999999999999999999999987765321 10000000000000        0000 0000000000        


Q ss_pred             ----cceeeccCCccCeEEEEEcCCCCEEEEEeC---C---CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE
Q 005277          412 ----RSYTLYQGHSGPVYSASFSPLGDFILSSSA---D---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS  481 (704)
Q Consensus       412 ----~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---D---g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg  481 (704)
                          .....+. +...-..|+|-.||.++++++.   .   ..+|||+-+ |....+-..-.+--.+++|.|.|+++|+.
T Consensus       197 ~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~  274 (928)
T PF04762_consen  197 TVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASS  274 (928)
T ss_pred             CCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEE
Confidence                0001122 3445678999999999997764   3   479999987 54433333333334578999999999988


Q ss_pred             eC---CCeEEEEECCCC---ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE--ee-cCCCCEEE
Q 005277          482 SH---DRTARIWSMDRI---QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI--FI-GHRSMILS  552 (704)
Q Consensus       482 s~---dg~i~lwd~~~~---~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~--~~-~h~~~i~~  552 (704)
                      -.   ...|.+|.-+..   +-.-.+......|..+.|++++..||....|. |.+|-..+..-...  +. .....+..
T Consensus       275 q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~  353 (928)
T PF04762_consen  275 QRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNF  353 (928)
T ss_pred             EEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCc
Confidence            63   455666664332   21111223456799999999999999987655 99999877642211  11 22334556


Q ss_pred             EEEecC-CCEEEEEeCCCeEEEEeCC----CCe--------eeeeecCCCceeeeeeeeeeehcccccccccccccccee
Q 005277          553 LAMSPD-GRYMASGDEDGTIMMWDLA----SGR--------CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFL  619 (704)
Q Consensus       553 l~~spd-g~~l~sg~~dg~I~iwdl~----~~~--------~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~  619 (704)
                      +.|+|. ...|..++.+|.+..+++.    .+.        .+..+.|..--++.+....+.    +.+.       .+.
T Consensus       354 ~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP----PPMs-------~~~  422 (928)
T PF04762_consen  354 VKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP----PPMS-------SYE  422 (928)
T ss_pred             eEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC----chHh-------ceE
Confidence            999994 5567777777777766543    111        122222222222211110000    0000       000


Q ss_pred             eeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccccc-Cccc--cccccccCCCCcCeEEEEEccCCcEEE
Q 005277          620 FYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS-GTNR--LRSLKTLPTKSTPVYSLQFSRRNLLFA  696 (704)
Q Consensus       620 ~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~-~~~~--~~~l~~~~~~~~~V~~l~fs~~g~~La  696 (704)
                      +.....+...++++++..+++-..||.|.+|............... ....  .............+..+.|..++.+++
T Consensus       423 l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (928)
T PF04762_consen  423 LELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLV  502 (928)
T ss_pred             EcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEE
Confidence            1111122333447777779999999999999966543221000000 0000  000111223355688889988887777


Q ss_pred             EeecC
Q 005277          697 AGALS  701 (704)
Q Consensus       697 ~gs~d  701 (704)
                      ....+
T Consensus       503 ~~~~~  507 (928)
T PF04762_consen  503 LSDSD  507 (928)
T ss_pred             EEecC
Confidence            76654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.05  E-value=2.5e-09  Score=114.94  Aligned_cols=252  Identities=20%  Similarity=0.293  Sum_probs=172.9

Q ss_pred             CEEEEEEcCC--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          353 GLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       353 ~V~~~~fs~d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      .|-.+.|||.  -.+-++......-.||++....                         .......+.||+..|+.+-|+
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss-------------------------~~aIef~lhghsraitd~n~~  123 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS-------------------------SNAIEFVLHGHSRAITDINFN  123 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCC-------------------------ccceEEEEecCccceeccccC
Confidence            4777888875  3344455555555689987521                         123445678999999999999


Q ss_pred             CCCC-EEEEEeCCCeEEEEeCCCCc-eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEeccCCCC
Q 005277          431 PLGD-FILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSD  507 (704)
Q Consensus       431 p~~~-~l~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~~~~~  507 (704)
                      |+.. .+++++.|..+..||+++.. .+..+.........|+|+-....+.+.+..+.|++||++.+ .++..+++|...
T Consensus       124 ~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~  203 (1081)
T KOG0309|consen  124 PQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSS  203 (1081)
T ss_pred             CCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEeccccee
Confidence            9876 67799999999999999764 34445555566778999986666666778899999999875 467788899999


Q ss_pred             eeEEEEcCC-CCEEEEEECCCcEEEEeCCCCc--EEEEeecCCCCEEEEEEecCCC--EEEEEeCCCeEEEEeC------
Q 005277          508 VDCVRWHIN-CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDL------  576 (704)
Q Consensus       508 V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~i~~l~~spdg~--~l~sg~~dg~I~iwdl------  576 (704)
                      |..+.|..- ...+.+.+.||+|..||.....  .-+.. ....+|..-.+.|-|.  ++.-.-.+..+.+++.      
T Consensus       204 vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e  282 (1081)
T KOG0309|consen  204 VNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLE  282 (1081)
T ss_pred             eehHHHhhhhhhhhcccCCCCceeeecccccccccceec-cccCcceeccccccCceeEeccccCCeeeeeccccchhhh
Confidence            999988753 4567888999999999986432  22222 2345566666666443  3322222224444433      


Q ss_pred             ---CC-CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277          577 ---AS-GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV  652 (704)
Q Consensus       577 ---~~-~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~  652 (704)
                         .+ .+++..+.||+..|...-|+..-.....+                        ....-.|+|-+.|..+++|-+
T Consensus       283 ~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~------------------------d~rdfQLVTWSkD~~lrlWpI  338 (1081)
T KOG0309|consen  283 WNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDY------------------------DSRDFQLVTWSKDQTLRLWPI  338 (1081)
T ss_pred             hccccCCcceeeecCcchHHHHHhhhhcccccCCC------------------------CccceeEEEeecCCceEeeec
Confidence               32 36789999999999888773211100000                        112347999999999999998


Q ss_pred             CC
Q 005277          653 TT  654 (704)
Q Consensus       653 ~~  654 (704)
                      .+
T Consensus       339 ~~  340 (1081)
T KOG0309|consen  339 DS  340 (1081)
T ss_pred             cH
Confidence            75

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=7.5e-08  Score=100.97  Aligned_cols=275  Identities=11%  Similarity=0.142  Sum_probs=178.5

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCC-----------CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC
Q 005277          351 HNGLNCASISQDGSLVAGGFSD-----------SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~d-----------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (704)
                      +.+|.-+.|||+.++|++=+..           ..++|||+.++.....                         .....+
T Consensus       249 Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrs-------------------------F~~~~~  303 (698)
T KOG2314|consen  249 HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRS-------------------------FPVIKS  303 (698)
T ss_pred             CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcc-------------------------eeccCC
Confidence            3568889999999999986531           4689999987432221                         111111


Q ss_pred             CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-----CCCeEEEEECCC
Q 005277          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-----HDRTARIWSMDR  494 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-----~dg~i~lwd~~~  494 (704)
                      ....-.-..||.|+++++.-..| +|.|++..+...+-.-.-.-..|....|+|.++.+|--+     .-..+.+-.+.+
T Consensus       304 ~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs  382 (698)
T KOG2314|consen  304 PYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS  382 (698)
T ss_pred             CccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc
Confidence            11122346899999999977765 699999876544332222345788999999988887543     223566777777


Q ss_pred             CceeEEeccCCCCeeEEEEcCCCCEEEEEE----------CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGS----------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s  564 (704)
                      .+.++...-+.-.=..+-|..+|.+|+.--          .-..+.|+.++.....-....-...|...+|-|.|..+++
T Consensus       383 ~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~v  462 (698)
T KOG2314|consen  383 KREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAV  462 (698)
T ss_pred             cceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEE
Confidence            777776665544444567778899998632          1123556666544332222345678999999999987776


Q ss_pred             EeC---CCeEEEEeCCC-C---eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277          565 GDE---DGTIMMWDLAS-G---RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL  637 (704)
Q Consensus       565 g~~---dg~I~iwdl~~-~---~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  637 (704)
                      -+.   ..++.+|-+.+ .   +.+..+.  ....+.+.|                                  +|.|++
T Consensus       463 i~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfw----------------------------------sPkG~f  506 (698)
T KOG2314|consen  463 ISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFW----------------------------------SPKGRF  506 (698)
T ss_pred             EEccccccceeEEEeecCCCchhhhhhhc--ccccceEEE----------------------------------cCCCcE
Confidence            443   35788888763 2   2233332  245567777                                  999999


Q ss_pred             EEEEe---CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          638 LASGS---ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       638 lasgs---~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      ++.+.   ..|.+.++|.......              ....+.| ...+.+-|.|.|+|+++++...
T Consensus       507 vvva~l~s~~g~l~F~D~~~a~~k--------------~~~~~eh-~~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  507 VVVAALVSRRGDLEFYDTDYADLK--------------DTASPEH-FAATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             EEEEEecccccceEEEecchhhhh--------------hccCccc-cccccceECCCCCEEEEeeehh
Confidence            87764   5789999998752210              1111222 2357789999999999998653

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=4.9e-08  Score=102.81  Aligned_cols=231  Identities=16%  Similarity=0.257  Sum_probs=157.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC
Q 005277          355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD  434 (704)
Q Consensus       355 ~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  434 (704)
                      .+..|+.|..+.| =-..+.|.+|++....                           ....  .-|...|..+.+||.+.
T Consensus       129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~---------------------------~~~~--kl~~~~i~~f~lSpgp~  178 (566)
T KOG2315|consen  129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFK---------------------------TIQH--KLSVSGITMLSLSPGPE  178 (566)
T ss_pred             cccccccchhhhh-hhhcceEEEEecCCcc---------------------------ceee--eeeccceeeEEecCCCC
Confidence            6889999876443 3346789999976511                           1111  12567788899988643


Q ss_pred             --EEEE-----EeCCCeEEEEeCCCCce--eEEeec-CCcCeeEEEEcCCCCEE-EEE--eC---------CCeEEEEEC
Q 005277          435 --FILS-----SSADTTIRLWSTKLNAN--LVCYKG-HNYPVWDVQFNPQGHYF-ASS--SH---------DRTARIWSM  492 (704)
Q Consensus       435 --~l~s-----~s~Dg~I~lwd~~~~~~--~~~~~~-h~~~V~~v~~sp~~~~l-~sg--s~---------dg~i~lwd~  492 (704)
                        .+++     .+.-+.|+||.......  ....+. ....=..+.|++-|.-| +.+  .-         ..++++.++
T Consensus       179 ~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t  258 (566)
T KOG2315|consen  179 PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT  258 (566)
T ss_pred             CceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence              3442     35667899998762211  111111 12223367888866532 222  22         347888888


Q ss_pred             CCCceeEEeccCCCCeeEEEEcCCCCEEEE--EECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC---
Q 005277          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIAT--GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE---  567 (704)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t--gs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~---  567 (704)
                      +.......+ ...++|.++.|+|++..+++  |-+-.++.|||++ ++++..+  ..++-.++-|+|.|++|+.+|-   
T Consensus       259 ~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL  334 (566)
T KOG2315|consen  259 QGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNL  334 (566)
T ss_pred             cCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCC
Confidence            843333333 35789999999999987765  6678899999985 5555555  4567789999999999988775   


Q ss_pred             CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC----
Q 005277          568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA----  643 (704)
Q Consensus       568 dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~----  643 (704)
                      .|.|-|||+.+.+++..+..-...  -..|                                  +|||.+++|++.    
T Consensus       335 ~G~mEvwDv~n~K~i~~~~a~~tt--~~eW----------------------------------~PdGe~flTATTaPRl  378 (566)
T KOG2315|consen  335 PGDMEVWDVPNRKLIAKFKAANTT--VFEW----------------------------------SPDGEYFLTATTAPRL  378 (566)
T ss_pred             CCceEEEeccchhhccccccCCce--EEEE----------------------------------cCCCcEEEEEeccccE
Confidence            489999999998888887755443  3567                                  999999998874    


Q ss_pred             --CCcEEEEeCCCC
Q 005277          644 --DCTVKLWDVTTS  655 (704)
Q Consensus       644 --Dg~V~iWd~~~~  655 (704)
                        |+.++||++...
T Consensus       379 rvdNg~KiwhytG~  392 (566)
T KOG2315|consen  379 RVDNGIKIWHYTGS  392 (566)
T ss_pred             EecCCeEEEEecCc
Confidence              789999998653

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=1.2e-07  Score=102.89  Aligned_cols=204  Identities=12%  Similarity=0.124  Sum_probs=149.9

Q ss_pred             EeeCCCCEEEEEEcCC------------CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccce
Q 005277          347 FINTHNGLNCASISQD------------GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY  414 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~d------------g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (704)
                      +..|...|+.+.|.|-            .-+||++...|.|.+||+..                            ....
T Consensus        51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~----------------------------~s~~  102 (1062)
T KOG1912|consen   51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL----------------------------ASVI  102 (1062)
T ss_pred             cccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh----------------------------hhhh
Confidence            3456678999999872            12678888899999999865                            2234


Q ss_pred             eeccCCccCeEEEEEcCC---C-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEE
Q 005277          415 TLYQGHSGPVYSASFSPL---G-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARI  489 (704)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~---~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~l  489 (704)
                      ..+..|..+|..++|-+.   . ..|+.-....++.+|+..+|+....+........|+.+.| +.+.|..-+..|.+.+
T Consensus       103 ~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~  182 (1062)
T KOG1912|consen  103 NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLS  182 (1062)
T ss_pred             hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEE
Confidence            556778899999999763   3 3566666778999999999999998887777888899999 6777777777888887


Q ss_pred             EECCC-------CceeEEeccCCC------------C-------------eeEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005277          490 WSMDR-------IQPLRIMAGHLS------------D-------------VDCVRWHINCNYIATGSSDKTVRLWDVSSG  537 (704)
Q Consensus       490 wd~~~-------~~~~~~~~~~~~------------~-------------V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~  537 (704)
                      .+.-.       ++..++-..|.+            .             ...++|+|.-+-++.......+.++|+.-.
T Consensus       183 ~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~  262 (1062)
T KOG1912|consen  183 CKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYE  262 (1062)
T ss_pred             EeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhh
Confidence            76532       223333333322            0             112567776555555556788999999988


Q ss_pred             cEEEEeecCCCCEEEEEEecCCC--EEEEEeCCCeEEEEeCCC
Q 005277          538 ECVRIFIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       538 ~~~~~~~~h~~~i~~l~~spdg~--~l~sg~~dg~I~iwdl~~  578 (704)
                      .++.+..-..+.+.-+.+-|+++  .|+++..||.+.+|-.+.
T Consensus       263 ~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  263 CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            88888877777777788888764  799999999999997654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=2.4e-07  Score=100.86  Aligned_cols=207  Identities=11%  Similarity=-0.030  Sum_probs=128.1

Q ss_pred             CEEEEEEcCCCCE-EEEEeCC---CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          353 GLNCASISQDGSL-VAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       353 ~V~~~~fs~dg~~-lasg~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      .+....|||||+. ++..+.+   ..|.++|+.+..                          .   ..+....+.+....
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--------------------------~---~~lt~~~g~~~~~~  239 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--------------------------K---EKIASSQGMLVVSD  239 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc--------------------------E---EEEecCCCcEEeeE
Confidence            6778999999984 6654443   447777765421                          1   11112345566778


Q ss_pred             EcCCCCEEE-EEeCC--CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeEEec
Q 005277          429 FSPLGDFIL-SSSAD--TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQPLRIMA  502 (704)
Q Consensus       429 ~sp~~~~l~-s~s~D--g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg--~i~lwd~~~~~~~~~~~  502 (704)
                      |+|||+.|+ +.+.+  ..|.++++.++.. ..+..+........|+|||+.++..+. .+  .|.++|+++++..+...
T Consensus       240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~  318 (419)
T PRK04043        240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF  318 (419)
T ss_pred             ECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence            999998766 44433  4677778876653 334434433445689999988776653 23  67778888776655443


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEECC---------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC---Ce
Q 005277          503 GHLSDVDCVRWHINCNYIATGSSD---------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---GT  570 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~d---------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d---g~  570 (704)
                      ...   ....|+|+|++|+..+..         ..|.+.|+.++.... +... .......|+|||+.|+....+   ..
T Consensus       319 ~g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~  393 (419)
T PRK04043        319 HGK---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSA  393 (419)
T ss_pred             CCC---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEE
Confidence            211   124899999999876643         368888988886543 3332 233468999999988765533   24


Q ss_pred             EEEEeCCCCeeeeeecCCCceeeee
Q 005277          571 IMMWDLASGRCVTPLMGHTSCVWTL  595 (704)
Q Consensus       571 I~iwdl~~~~~~~~~~~h~~~V~sl  595 (704)
                      +.+.++... ....+....+.+...
T Consensus       394 L~~~~l~g~-~~~~l~~~~g~~~~p  417 (419)
T PRK04043        394 LGIIRLNYN-KSFLFPLKVGKIQSI  417 (419)
T ss_pred             EEEEecCCC-eeEEeecCCCccCCC
Confidence            667777543 333343333444433

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.00  E-value=3.6e-07  Score=95.56  Aligned_cols=242  Identities=12%  Similarity=0.039  Sum_probs=151.1

Q ss_pred             EcCCCCEEEEEeC----------CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          359 ISQDGSLVAGGFS----------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       359 fs~dg~~lasg~~----------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      +||||+.|.++..          +..|.+||..+.............                   ..+  ....-..++
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p-------------------~~~--~~~~~~~~~  111 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP-------------------RFL--VGTYPWMTS  111 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc-------------------hhh--ccCccceEE
Confidence            9999998877765          788999999874432211110000                   000  011234688


Q ss_pred             EcCCCCEEEEEe-C-CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE-----Ee
Q 005277          429 FSPLGDFILSSS-A-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-----IM  501 (704)
Q Consensus       429 ~sp~~~~l~s~s-~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~-----~~  501 (704)
                      ++|||++|+... . +..|.+.|+.+++.+..+.-.. +..-...++...+  +-+.||......++......     .+
T Consensus       112 ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf  188 (352)
T TIGR02658       112 LTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVF  188 (352)
T ss_pred             ECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeee
Confidence            999999998765 3 6899999999999888776422 2222333333322  22345555554443221111     11


Q ss_pred             ccCCCCeeE-EEEcC-CCCEEEEEECCCcEEEEeCCC-----CcEEEEeec-------CCCCEEEEEEecCCCEEEEEe-
Q 005277          502 AGHLSDVDC-VRWHI-NCNYIATGSSDKTVRLWDVSS-----GECVRIFIG-------HRSMILSLAMSPDGRYMASGD-  566 (704)
Q Consensus       502 ~~~~~~V~~-v~~~p-~~~~l~tgs~dg~I~iwd~~~-----~~~~~~~~~-------h~~~i~~l~~spdg~~l~sg~-  566 (704)
                      .+...++.. =.|.+ ++.++++... |+|.+.|+..     ......+..       ..+.+.-++++|+|+.+++.. 
T Consensus       189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~  267 (352)
T TIGR02658       189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD  267 (352)
T ss_pred             cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence            110011000 03345 8888888776 9999999643     333333221       223455599999999888743 


Q ss_pred             ---------CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC-
Q 005277          567 ---------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS-  636 (704)
Q Consensus       567 ---------~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-  636 (704)
                               ..+.|.++|..+++.+..+.. ...++.+.+                                  ++|++ 
T Consensus       268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iav----------------------------------S~Dgkp  312 (352)
T TIGR02658       268 QRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINV----------------------------------SQDAKP  312 (352)
T ss_pred             CCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEE----------------------------------CCCCCe
Confidence                     225799999999999988863 346788888                                  99999 


Q ss_pred             EEEEEe-CCCcEEEEeCCCCccccc
Q 005277          637 LLASGS-ADCTVKLWDVTTSTKVLK  660 (704)
Q Consensus       637 ~lasgs-~Dg~V~iWd~~~~~~~~~  660 (704)
                      +|++.. .++.|.+.|..+++.+..
T Consensus       313 ~lyvtn~~s~~VsViD~~t~k~i~~  337 (352)
T TIGR02658       313 LLYALSTGDKTLYIFDAETGKELSS  337 (352)
T ss_pred             EEEEeCCCCCcEEEEECcCCeEEee
Confidence            777665 678999999998876533

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.97  E-value=1.1e-07  Score=91.33  Aligned_cols=198  Identities=12%  Similarity=-0.019  Sum_probs=134.8

Q ss_pred             CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC-CCEEEEEe
Q 005277          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL-GDFILSSS  440 (704)
Q Consensus       362 dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s  440 (704)
                      ...+||.|+..|...+|...+.....                           ..-..|...|+-+.=.-+ .--+..++
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~---------------------------~~cd~snn~v~~~~r~cd~~~~~~i~s  135 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHL---------------------------YQCDVSNNDVTLVKRYCDLKFPLNIAS  135 (344)
T ss_pred             cccEEEeccccceeeeecccCcccce---------------------------eeecccccchhhhhhhcccccceeecc
Confidence            45689999999999999987522111                           111122222221111111 12366778


Q ss_pred             CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEE-eccCCCCeeEEEEcCCC
Q 005277          441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLRI-MAGHLSDVDCVRWHINC  517 (704)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~--~~~~-~~~~~~~V~~v~~~p~~  517 (704)
                      .|.++++.+++.+..........-.+.++.++++++++++.+....|.+|.++...  .+++ .....+.-.+..|+.+.
T Consensus       136 ndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~  215 (344)
T KOG4532|consen  136 NDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND  215 (344)
T ss_pred             CCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc
Confidence            88899998887554433222222348899999999999999999999999997632  2332 23344456788999999


Q ss_pred             CEEEEEECCCcEEEEeCCCCcEEE-----EeecCCCCEEEEEEecCCC--EEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277          518 NYIATGSSDKTVRLWDVSSGECVR-----IFIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLASGRCVTPLM  586 (704)
Q Consensus       518 ~~l~tgs~dg~I~iwd~~~~~~~~-----~~~~h~~~i~~l~~spdg~--~l~sg~~dg~I~iwdl~~~~~~~~~~  586 (704)
                      ..+|++..||++.|||++......     .-..|.+.+..+.|+|.|.  +|...-.-+.+.+.|+++++....+.
T Consensus       216 ~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  216 LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            999999999999999998654322     2235889999999998664  45555556789999999987665543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.94  E-value=3.6e-07  Score=95.24  Aligned_cols=239  Identities=14%  Similarity=0.178  Sum_probs=154.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCc---------------EEEEEcccCCccccccccCCCCCCCCcccccCCCCCcccee
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSS---------------LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT  415 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~---------------I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (704)
                      +..|.-+.|||.+++|.+=+..+.               +.|||..++                            ..+.
T Consensus        71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg----------------------------~iv~  122 (561)
T COG5354          71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG----------------------------MIVF  122 (561)
T ss_pred             cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc----------------------------eeEe
Confidence            346889999999999998765544               778877652                            1222


Q ss_pred             eccCCccC--eE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEeec-CCcCeeEEEEcCCC--CEEEE-----EeC
Q 005277          416 LYQGHSGP--VY-SASFSPLGDFILSSSADTTIRLWSTKLNAN-LVCYKG-HNYPVWDVQFNPQG--HYFAS-----SSH  483 (704)
Q Consensus       416 ~~~~h~~~--V~-~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~-~~~~~~-h~~~V~~v~~sp~~--~~l~s-----gs~  483 (704)
                      .+.+-..+  .. -+.|+-+..+++--.. ..+.|+++ +... ...+.. ....|....|+|.+  ..|+.     .+.
T Consensus       123 sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~k  200 (561)
T COG5354         123 SFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNK  200 (561)
T ss_pred             eccccCCcccccceeeeeecchhhhhhcc-CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCC
Confidence            22222222  23 5778888887764432 36999997 3322 111111 13568889999953  33443     357


Q ss_pred             CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE-----------CCCcEEEEeCCCCcEEEEeecCCCCEEE
Q 005277          484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-----------SDKTVRLWDVSSGECVRIFIGHRSMILS  552 (704)
Q Consensus       484 dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-----------~dg~I~iwd~~~~~~~~~~~~h~~~i~~  552 (704)
                      ++++++|.+...+.+....-....-..+.|++.|+++++-.           ....++|++++ ++.++......++|..
T Consensus       201 pa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-e~~i~V~~~~~~pVhd  279 (561)
T COG5354         201 PAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-ERSIPVEKDLKDPVHD  279 (561)
T ss_pred             CcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec-ccccceecccccccee
Confidence            88999999987777766544444456788999999887532           12458888886 4445544466899999


Q ss_pred             EEEecCCCEEEE--EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277          553 LAMSPDGRYMAS--GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC  630 (704)
Q Consensus       553 l~~spdg~~l~s--g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (704)
                      .+|.|.++.+++  |-.+..+.++|++.. ....+.  ...-..+.|                                 
T Consensus       280 f~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~f---------------------------------  323 (561)
T COG5354         280 FTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFF---------------------------------  323 (561)
T ss_pred             eeecccCCceeEEecccccceeecccccc-eEEecC--Ccccccccc---------------------------------
Confidence            999998887665  457889999999866 333222  222233445                                 


Q ss_pred             cCCCCCEEEEEeCC---CcEEEEeCCCCcc
Q 005277          631 ASCEGSLLASGSAD---CTVKLWDVTTSTK  657 (704)
Q Consensus       631 ~s~~g~~lasgs~D---g~V~iWd~~~~~~  657 (704)
                       +|.+++++.++-|   |.|-+||......
T Consensus       324 -sp~~r~il~agF~nl~gni~i~~~~~rf~  352 (561)
T COG5354         324 -SPHERYILFAGFDNLQGNIEIFDPAGRFK  352 (561)
T ss_pred             -cCcccEEEEecCCccccceEEeccCCceE
Confidence             7777777776543   6777777765443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.93  E-value=5.5e-07  Score=97.51  Aligned_cols=186  Identities=14%  Similarity=0.046  Sum_probs=121.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEE-EcC--CCCEEEEEeCCCeEEEEECCCCceeEEeccCCC---
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQ-FNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS---  506 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~-~sp--~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~---  506 (704)
                      +..++.++.+|.+..||..+++.+..+......+.... -+|  .+..++.++.+|.+..+|.++++.+........   
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~  224 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR  224 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence            45677788899999999999988877654332211000 011  234677888889999999998876654321100   


Q ss_pred             -C---eeEEEEcC--CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          507 -D---VDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       507 -~---V~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                       .   +..+.-+|  .+..+++++.+|.++.||..+|+.+..... . ......  .++..+++++.+|.+..+|..+|+
T Consensus       225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPA--VDDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCce--EeCCEEEEECCCCeEEEEECCCCc
Confidence             0   00011111  356788888999999999999988776542 1 112222  256788888999999999999998


Q ss_pred             eeeeecCCCce-eeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277          581 CVTPLMGHTSC-VWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       581 ~~~~~~~h~~~-V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~  658 (704)
                      .+-........ ..+.                                    ...+..|++++.+|.|++||..+++..
T Consensus       301 ~~W~~~~~~~~~~ssp------------------------------------~i~g~~l~~~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       301 ELWKNDELKYRQLTAP------------------------------------AVVGGYLVVGDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             EEEccccccCCccccC------------------------------------EEECCEEEEEeCCCEEEEEECCCCCEE
Confidence            76544221111 1111                                    123568999999999999999888654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.90  E-value=3.2e-06  Score=87.37  Aligned_cols=150  Identities=16%  Similarity=0.207  Sum_probs=123.3

Q ss_pred             eeccCCccCeEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005277          415 TLYQGHSGPVYSASFSPLGDFILSSSADT-TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (704)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg-~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~  493 (704)
                      ..-.+|.+.|.-..+..+++-++.|..|| .+-|+|.+++.. ..+...-+.|.++..+|+|++++.+.....+-+.|++
T Consensus       353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            33457888899889988888899999999 899999996654 4455567789999999999999999999999999999


Q ss_pred             CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCC----cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe
Q 005277          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg----~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~  566 (704)
                      ++.....-+...+-|+.+.|||++.++|.+--+|    .|+++|+.+++....-+ ..+.=.+-+|.|||++|.--+
T Consensus       432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence            9988777677778899999999999999876554    69999999988776543 334445678999999887654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.90  E-value=2.5e-08  Score=101.13  Aligned_cols=163  Identities=21%  Similarity=0.251  Sum_probs=116.2

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC
Q 005277          355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD  434 (704)
Q Consensus       355 ~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  434 (704)
                      ..+..++.+++||++..+....++++......                        .+....... ...-+++.|..+..
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~------------------------~kl~~~~~v-~~~~~ai~~~~~~~  120 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKG------------------------AKLLDVSCV-PKRPTAISFIREDT  120 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCc------------------------ceeeeEeec-ccCcceeeeeeccc
Confidence            44556788999999998888878887652210                        011111111 11223444444444


Q ss_pred             EEE---EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCeeE
Q 005277          435 FIL---SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-GHLSDVDC  510 (704)
Q Consensus       435 ~l~---s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~-~~~~~V~~  510 (704)
                      ...   .++....+.+|+... .+...+-||-..+.+|+|+||+++++++..|..|++-.......+..+. ||..-|..
T Consensus       121 sv~v~dkagD~~~~di~s~~~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~  199 (390)
T KOG3914|consen  121 SVLVADKAGDVYSFDILSADS-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVST  199 (390)
T ss_pred             eEEEEeecCCceeeeeecccc-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheee
Confidence            333   445566677777766 4445566899999999999999999999999999998887665555554 79999999


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee
Q 005277          511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI  544 (704)
Q Consensus       511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~  544 (704)
                      ++.-++ ..|++|+.|++|++||+++|+++..+.
T Consensus       200 isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  200 ISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence            998765 458999999999999999999887653

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.89  E-value=1.4e-07  Score=102.34  Aligned_cols=239  Identities=17%  Similarity=0.117  Sum_probs=177.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (704)
                      -.++.|+|.| +||.|+ .+.|.+-|...                            .+.++.+.-|...|+.+.|.|..
T Consensus        18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s----------------------------~q~iqsie~h~s~V~~VrWap~~   67 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGS-HSLVSVVDSRS----------------------------LQLIQSIELHQSAVTSVRWAPAP   67 (1062)
T ss_pred             ccccccCccc-eEEEec-CceEEEEehhh----------------------------hhhhhccccCccceeEEEeccCC
Confidence            5778999876 677775 45677777554                            23445566788999999998742


Q ss_pred             ------------CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC---CC-CEEEEEeCCCeEEEEECCCCce
Q 005277          434 ------------DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP---QG-HYFASSSHDRTARIWSMDRIQP  497 (704)
Q Consensus       434 ------------~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp---~~-~~l~sgs~dg~i~lwd~~~~~~  497 (704)
                                  -.|+++...|.|.+||...+..+..+..|..++.+++|-+   +. ..++.-....++.+|+.++|+.
T Consensus        68 ~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen   68 SPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             CchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence                        2467888889999999999999999999999999999987   33 4566666778999999999999


Q ss_pred             eEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCC-------CCcEEEEeecCCC------------C--------
Q 005277          498 LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-------SGECVRIFIGHRS------------M--------  549 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~-------~~~~~~~~~~h~~------------~--------  549 (704)
                      ...+........|+.+.| +...+..-+..|.+.+.+.-       .|+.+..-..|..            .        
T Consensus       148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa  227 (1062)
T KOG1912|consen  148 FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA  227 (1062)
T ss_pred             eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence            988876667788899998 56677777778888777653       2334433333322            0        


Q ss_pred             -----EEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeee
Q 005277          550 -----ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT  624 (704)
Q Consensus       550 -----i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (704)
                           .-.++|+|.-+.++.......+.++|+.-..++....-..+.+.-++|-+                         
T Consensus       228 ~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP-------------------------  282 (1062)
T KOG1912|consen  228 YFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP-------------------------  282 (1062)
T ss_pred             hHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEecc-------------------------
Confidence                 12256788766666666677899999988878777766666666666621                         


Q ss_pred             EEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          625 IIYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       625 ~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                             .+....|+++-.||.+.||-.+.
T Consensus       283 -------~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  283 -------DPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             -------CCCcceEEEEecCCeEEEEEeec
Confidence                   55567899999999999998665

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.88  E-value=8.2e-07  Score=91.64  Aligned_cols=150  Identities=15%  Similarity=0.197  Sum_probs=122.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC-eEEEEECCCCceeEEeccCCCCeeE
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-TARIWSMDRIQPLRIMAGHLSDVDC  510 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg-~i~lwd~~~~~~~~~~~~~~~~V~~  510 (704)
                      +|.+++..|. |...|.+...+-.+.  -+|.+.|.-..+..++.-++.|..|| .+-++|.++++..+ +....+.|.+
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEA  406 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEE
Confidence            5788888876 567777665443333  35677798888888888999999999 99999999876544 4557789999


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC----eEEEEeCCCCeeeeee
Q 005277          511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG----TIMMWDLASGRCVTPL  585 (704)
Q Consensus       511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg----~I~iwdl~~~~~~~~~  585 (704)
                      +..+|+|++++++.....+.+.|+.+|+....-+...+-|+.+.|+|+++++|-+--+|    .|+++|+.+++.....
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence            99999999999999999999999999987766666778899999999999999887766    6899999988765543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.88  E-value=2.4e-08  Score=95.45  Aligned_cols=175  Identities=21%  Similarity=0.232  Sum_probs=111.1

Q ss_pred             cCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccce
Q 005277          335 SSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY  414 (704)
Q Consensus       335 ~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (704)
                      |......-.+.++..|.+.-.|-+.+--++-+++|..||.+.+++.+... ....                         
T Consensus        73 ~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~-~~~~-------------------------  126 (319)
T KOG4714|consen   73 WERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDL-ALMS-------------------------  126 (319)
T ss_pred             hhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHH-hhhh-------------------------
Confidence            33333334444555555555555556667889999999999999976511 0000                         


Q ss_pred             eeccCCccCeEEEEEcCCCCEEEEEe-----CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEE
Q 005277          415 TLYQGHSGPVYSASFSPLGDFILSSS-----ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTAR  488 (704)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~l~s~s-----~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~  488 (704)
                      +.-.-|.+. .+.+....++++.++.     .-+..++|+++..+....-+.-...|.+++-+| +.+.+++|+.||.+.
T Consensus       127 ~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~  205 (319)
T KOG4714|consen  127 RIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVG  205 (319)
T ss_pred             hcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEE
Confidence            000011111 1222223344444332     123456777765443332222233499999999 566788889999999


Q ss_pred             EEECCCCc-eeEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 005277          489 IWSMDRIQ-PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS  536 (704)
Q Consensus       489 lwd~~~~~-~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~  536 (704)
                      +||.++.. +...+..|..++..+-||| ++..|++++.||.+..||..+
T Consensus       206 l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  206 LWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            99998864 4455678999999999998 578999999999999999764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=1.4e-06  Score=94.96  Aligned_cols=202  Identities=11%  Similarity=0.017  Sum_probs=128.1

Q ss_pred             CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCE-EEEEeC---CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCC
Q 005277          443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSH---DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN  518 (704)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~-l~sgs~---dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~  518 (704)
                      ..|.+-|.+... ...+.... .+..-.|+|+|+. ++..+.   +..|.++|+.+++...... ..+......|+|||+
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~  245 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS  245 (419)
T ss_pred             ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence            355555555333 33333333 7788999999984 554433   3568889998887665544 445566788999998


Q ss_pred             EEEEEE-C--CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC-C--eEEEEeCCCCeeeeeecCCCcee
Q 005277          519 YIATGS-S--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-G--TIMMWDLASGRCVTPLMGHTSCV  592 (704)
Q Consensus       519 ~l~tgs-~--dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d-g--~I~iwdl~~~~~~~~~~~h~~~V  592 (704)
                      .++... .  +..|.++|+.++...+ +..+........|+|||+.|+..+.. |  .|.++|+.+++....... ..  
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--  321 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--  321 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--
Confidence            776543 2  3568888988887544 44444434566899999988766532 2  688888887765333221 11  


Q ss_pred             eeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC---------CcEEEEeCCCCcccccccc
Q 005277          593 WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD---------CTVKLWDVTTSTKVLKTEE  663 (704)
Q Consensus       593 ~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D---------g~V~iWd~~~~~~~~~~~~  663 (704)
                      ....|                                  +|+|+.|+..+..         ..|.+.|+.++..      
T Consensus       322 ~~~~~----------------------------------SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~------  361 (419)
T PRK04043        322 NNSSV----------------------------------STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI------  361 (419)
T ss_pred             cCceE----------------------------------CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe------
Confidence            12356                                  9999988766543         2577777766542      


Q ss_pred             ccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          664 KSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       664 ~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                             +.+..-    .......|+|||..++..+..+
T Consensus       362 -------~~LT~~----~~~~~p~~SPDG~~I~f~~~~~  389 (419)
T PRK04043        362 -------RRLTAN----GVNQFPRFSSDGGSIMFIKYLG  389 (419)
T ss_pred             -------EECCCC----CCcCCeEECCCCCEEEEEEccC
Confidence                   112221    1223578999999888876554

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.88  E-value=4.6e-09  Score=104.04  Aligned_cols=156  Identities=18%  Similarity=0.277  Sum_probs=120.8

Q ss_pred             EEEcC--CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-----cEEE
Q 005277          469 VQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-----ECVR  541 (704)
Q Consensus       469 v~~sp--~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-----~~~~  541 (704)
                      ++|+-  .|.. ++.+.+..|-+-|++++-. +.|. ..++|.++.|+..+++++.|+.+|.|..+|++.+     .+..
T Consensus       217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~  293 (425)
T KOG2695|consen  217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ  293 (425)
T ss_pred             hhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence            35543  3444 4455667888999988643 3333 6788999999999999999999999999999865     3444


Q ss_pred             EeecCCCCEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCee---eeeecCCCceeeeeeeeeeehccccccccccccccc
Q 005277          542 IFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRC---VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTG  617 (704)
Q Consensus       542 ~~~~h~~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~~~---~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~  617 (704)
                      .+ -|...|+++..-. ++++|++.+.+|+|++||++.-++   +.++.||...-.-+.+..                  
T Consensus       294 rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v------------------  354 (425)
T KOG2695|consen  294 RL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHV------------------  354 (425)
T ss_pred             EE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccc------------------
Confidence            34 4888999998777 789999999999999999998777   888888875444443311                  


Q ss_pred             eeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277          618 FLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK  660 (704)
Q Consensus       618 ~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~  660 (704)
                                    .+....++++|.|...|||.+..+..+.+
T Consensus       355 --------------~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  355 --------------KEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             --------------ccccceEEEccCeeEEEEEecccCceeec
Confidence                          66777899999999999999998876543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.87  E-value=2.1e-08  Score=101.75  Aligned_cols=161  Identities=17%  Similarity=0.233  Sum_probs=116.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eEEeecCCcCeeEEEEcCCCCEEEEE---eCCCeEEEEECCCC
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNPQGHYFASS---SHDRTARIWSMDRI  495 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~----~~~~~~h~~~V~~v~~sp~~~~l~sg---s~dg~i~lwd~~~~  495 (704)
                      .+..+..++.+++|+++..+....++++.....    +..+. -...-+.+.|..+......+   +....+.+|.... 
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-  141 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-  141 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence            345566778888888888888877777664432    22221 22233455555555554444   4445566666555 


Q ss_pred             ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (704)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw  574 (704)
                      .+...+-||.+.+..|+|+||+++|+++..|..||+-....-..+..| -||+.-|..++.-++ +.|++||.|++|++|
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW  220 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence            344555689999999999999999999999999999887665555554 479999999999854 568999999999999


Q ss_pred             eCCCCeeeeeec
Q 005277          575 DLASGRCVTPLM  586 (704)
Q Consensus       575 dl~~~~~~~~~~  586 (704)
                      |+.+|+.+.++.
T Consensus       221 d~~sgk~L~t~d  232 (390)
T KOG3914|consen  221 DITSGKLLDTCD  232 (390)
T ss_pred             ecccCCcccccc
Confidence            999999886553

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.87  E-value=2e-06  Score=84.38  Aligned_cols=231  Identities=13%  Similarity=0.149  Sum_probs=134.1

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE
Q 005277          357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI  436 (704)
Q Consensus       357 ~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l  436 (704)
                      ++.+.||++||+- .|..|.|=..+..-....                       ..........-.=.-++||||+.+|
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~-----------------------~kcqVpkD~~PQWRkl~WSpD~tlL   58 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSII-----------------------GKCQVPKDPNPQWRKLAWSPDCTLL   58 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchhee-----------------------EEEecCCCCCchheEEEECCCCcEE
Confidence            5678899988876 688887776543211100                       0111111122234578999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEeec-------CCcCeeEEEEcCC------CCEEEEEeCCCeEEEEECCC-----Ccee
Q 005277          437 LSSSADTTIRLWSTKLNANLVCYKG-------HNYPVWDVQFNPQ------GHYFASSSHDRTARIWSMDR-----IQPL  498 (704)
Q Consensus       437 ~s~s~Dg~I~lwd~~~~~~~~~~~~-------h~~~V~~v~~sp~------~~~l~sgs~dg~i~lwd~~~-----~~~~  498 (704)
                      +.+...|+|+++|+.. ..+..+..       -...|.++.|.+.      ...|++-..+|.++-|-+..     .+..
T Consensus        59 a~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~  137 (282)
T PF15492_consen   59 AYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQEN  137 (282)
T ss_pred             EEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceee
Confidence            9999999999999984 44433332       1356777777652      22466666778777776532     2222


Q ss_pred             EEec---cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEE---ecCCCEEEEEeCCC---
Q 005277          499 RIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM---SPDGRYMASGDEDG---  569 (704)
Q Consensus       499 ~~~~---~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~---spdg~~l~sg~~dg---  569 (704)
                      ..+.   .+...|.++.|+|..++|++|+....      ..+.    -+.....+++-..   +|..+. ++...|+   
T Consensus       138 hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~  206 (282)
T PF15492_consen  138 HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQ-VTSSEDDITA  206 (282)
T ss_pred             EEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEE-ccccCccccc
Confidence            3332   24668999999999999988774332      0000    0011112222111   111111 1122221   


Q ss_pred             ---eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277          570 ---TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT  646 (704)
Q Consensus       570 ---~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~  646 (704)
                         +-.+|.+-+.+...........|..|..                                  ||||+.||+...+|.
T Consensus       207 ~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl----------------------------------SPdg~~La~ih~sG~  252 (282)
T PF15492_consen  207 SSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL----------------------------------SPDGSLLACIHFSGS  252 (282)
T ss_pred             cccccceeeccceeeeeccccCCCceEEEEE----------------------------------CCCCCEEEEEEcCCe
Confidence               1234444333222222234567777777                                  999999999999999


Q ss_pred             EEEEeCCCCcc
Q 005277          647 VKLWDVTTSTK  657 (704)
Q Consensus       647 V~iWd~~~~~~  657 (704)
                      |.+|++.+-..
T Consensus       253 lsLW~iPsL~~  263 (282)
T PF15492_consen  253 LSLWEIPSLRL  263 (282)
T ss_pred             EEEEecCcchh
Confidence            99999987543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.85  E-value=7.4e-07  Score=107.41  Aligned_cols=215  Identities=13%  Similarity=0.182  Sum_probs=135.9

Q ss_pred             EEEEEEcCCCCEEEEE-eCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC-
Q 005277          354 LNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP-  431 (704)
Q Consensus       354 V~~~~fs~dg~~lasg-~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-  431 (704)
                      ...++++++++.|.++ ..++.|+++|+.+.........  +.....     . ..+.......   . ..-.+++|+| 
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~--G~~g~~-----~-~gg~~~~~~~---l-n~P~gVa~dp~  693 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGN--GTKGSD-----Y-QGGKKGTSQV---L-NSPWDVCFEPV  693 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEecc--CcccCC-----C-CCChhhhHhh---c-CCCeEEEEecC
Confidence            4778898887765554 4467799998765221111000  000000     0 0000000000   1 1235789999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeecC---------------CcCeeEEEEcCCCCEE-EEEeCCCeEEEEECCCC
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGH---------------NYPVWDVQFNPQGHYF-ASSSHDRTARIWSMDRI  495 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h---------------~~~V~~v~~sp~~~~l-~sgs~dg~i~lwd~~~~  495 (704)
                      ++..+++.+.++.|++||..++... .+.+.               -...+.|+++|++.++ ++-+.++.|++||++++
T Consensus       694 ~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg  772 (1057)
T PLN02919        694 NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG  772 (1057)
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            4556667778899999998866432 22111               1235679999998854 55567799999999875


Q ss_pred             ceeEEecc---------------------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-c--------
Q 005277          496 QPLRIMAG---------------------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-G--------  545 (704)
Q Consensus       496 ~~~~~~~~---------------------~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~--------  545 (704)
                      .......+                     ......+++++++|+++++-+.++.|++||..++....... +        
T Consensus       773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~  852 (1057)
T PLN02919        773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK  852 (1057)
T ss_pred             cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCc
Confidence            43211100                     01123588999999988888899999999998876554321 1        


Q ss_pred             ----CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277          546 ----HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (704)
Q Consensus       546 ----h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~  581 (704)
                          .-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus       853 ~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        853 ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                112577899999999999889999999999988764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.85  E-value=5.7e-06  Score=86.61  Aligned_cols=217  Identities=13%  Similarity=0.146  Sum_probs=130.8

Q ss_pred             EcCCCCEEEEEeC----------CCeEEEEeCCCCceeEEeecC-------CcCeeEEEEcCCCCEEEEEe-C-CCeEEE
Q 005277          429 FSPLGDFILSSSA----------DTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSS-H-DRTARI  489 (704)
Q Consensus       429 ~sp~~~~l~s~s~----------Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~v~~sp~~~~l~sgs-~-dg~i~l  489 (704)
                      ++||++.|+.+..          +..|.+||..+.+.+..+...       ......++++|+|+++++.. . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999998886654          789999999999998877632       12234789999999988776 3 799999


Q ss_pred             EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCcEE----EEeecCCCCEEE-EEEec-CCCEE
Q 005277          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECV----RIFIGHRSMILS-LAMSP-DGRYM  562 (704)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~----~~~~~h~~~i~~-l~~sp-dg~~l  562 (704)
                      .|+.+++.+..+.-. +...-+..+.+..+  +-+.||......+. +|+..    ..|.+...++.. -.|++ +|+++
T Consensus       133 vD~~~~kvv~ei~vp-~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~  209 (352)
T TIGR02658       133 VDLEGKAFVRMMDVP-DCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV  209 (352)
T ss_pred             EECCCCcEEEEEeCC-CCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence            999999888877632 11222222222222  12234444443332 12211    111110111000 04466 88888


Q ss_pred             EEEeCCCeEEEEeCCCCee-----eeeecC-------CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277          563 ASGDEDGTIMMWDLASGRC-----VTPLMG-------HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC  630 (704)
Q Consensus       563 ~sg~~dg~I~iwdl~~~~~-----~~~~~~-------h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (704)
                      .+... |.|.+.|+.....     ...+..       ..+...-+++                                 
T Consensus       210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~---------------------------------  255 (352)
T TIGR02658       210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY---------------------------------  255 (352)
T ss_pred             EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE---------------------------------
Confidence            77776 9999999754322     221110       0111111333                                 


Q ss_pred             cCCCCCEEEEEe----------CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCc-EEEEee
Q 005277          631 ASCEGSLLASGS----------ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGA  699 (704)
Q Consensus       631 ~s~~g~~lasgs----------~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~-~La~gs  699 (704)
                       +++++.+++..          ..+.|.++|..+.+.+               ..++. ...+..++|+||++ +|.+..
T Consensus       256 -~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi---------------~~i~v-G~~~~~iavS~Dgkp~lyvtn  318 (352)
T TIGR02658       256 -HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL---------------RKIEL-GHEIDSINVSQDAKPLLYALS  318 (352)
T ss_pred             -cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE---------------EEEeC-CCceeeEEECCCCCeEEEEeC
Confidence             88888887743          2257999999887653               33333 35789999999999 666554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.85  E-value=4.6e-08  Score=95.64  Aligned_cols=244  Identities=16%  Similarity=0.326  Sum_probs=157.1

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eeEEeecCC------------cCeeEEEEcCCC--CEEEEE
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-----NLVCYKGHN------------YPVWDVQFNPQG--HYFASS  481 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-----~~~~~~~h~------------~~V~~v~~sp~~--~~l~sg  481 (704)
                      ...|+++.|...|.||++|...|.|.++.-....     ....+++|.            ..|..|.|..++  ..|+..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4678999999999999999999999999765432     122355554            347788887643  457778


Q ss_pred             eCCCeEEEEECCCC------------------------------------------ceeEEe-ccCCCCeeEEEEcCCCC
Q 005277          482 SHDRTARIWSMDRI------------------------------------------QPLRIM-AGHLSDVDCVRWHINCN  518 (704)
Q Consensus       482 s~dg~i~lwd~~~~------------------------------------------~~~~~~-~~~~~~V~~v~~~p~~~  518 (704)
                      +.|++|++|.+...                                          .+.+.+ ..|.-.+.+++|+.+..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            89999999987421                                          011222 35666788899988877


Q ss_pred             EEEEEECCCcEEEEeCCCCc-E--EEEeecCC-----CCEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCeee------e
Q 005277          519 YIATGSSDKTVRLWDVSSGE-C--VRIFIGHR-----SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCV------T  583 (704)
Q Consensus       519 ~l~tgs~dg~I~iwd~~~~~-~--~~~~~~h~-----~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~~~------~  583 (704)
                      .++++ .|-.|.+|.+.--. +  +-.++.|.     .-|++..|+|. ...+.-.+..|.|++-|++....-      .
T Consensus       186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            77776 57789999886322 1  22233443     35888999995 456666778899999999853211      1


Q ss_pred             e--e--------cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277          584 P--L--------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVT  653 (704)
Q Consensus       584 ~--~--------~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~  653 (704)
                      .  +        .+-...|..+.|                                  +++|+++++-+. .+|+|||+.
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kF----------------------------------s~ngryIlsRdy-ltvkiwDvn  309 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKF----------------------------------SDNGRYILSRDY-LTVKIWDVN  309 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEE----------------------------------cCCCcEEEEecc-ceEEEEecc
Confidence            0  1        111234455555                                  999999988776 599999999


Q ss_pred             CCccccccccccCccccccccccCCCCcCe---EEEEEccCCcEEEEeecCC
Q 005277          654 TSTKVLKTEEKSGTNRLRSLKTLPTKSTPV---YSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V---~~l~fs~~g~~La~gs~dg  702 (704)
                      ..........-... -...+.... ....|   ..+.||.|...+.+|++.+
T Consensus       310 m~k~pikTi~~h~~-l~~~l~d~Y-EnDaifdkFeisfSgd~~~v~sgsy~N  359 (460)
T COG5170         310 MAKNPIKTIPMHCD-LMDELNDVY-ENDAIFDKFEISFSGDDKHVLSGSYSN  359 (460)
T ss_pred             cccCCceeechHHH-HHHHHHhhh-hccceeeeEEEEecCCccccccccccc
Confidence            87654433210000 000011110 11222   4577888888888888765

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.82  E-value=9.5e-06  Score=82.19  Aligned_cols=206  Identities=16%  Similarity=0.150  Sum_probs=138.1

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc-CCC
Q 005277          356 CASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS-PLG  433 (704)
Q Consensus       356 ~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-p~~  433 (704)
                      +..|.+ ++.++++-...+.|..|+..+..                             ..... ..+ ..++.+. +++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~-----------------------------~~~~~-~~~-~~G~~~~~~~g   52 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE-----------------------------VEVID-LPG-PNGMAFDRPDG   52 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTE-----------------------------EEEEE-SSS-EEEEEEECTTS
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCe-----------------------------EEEEe-cCC-CceEEEEccCC
Confidence            567887 78888888889999999976521                             11111 111 6677777 565


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeec-----CCcCeeEEEEcCCCCEEEEEeCC--------CeEEEEECCCCceeEE
Q 005277          434 DFILSSSADTTIRLWSTKLNANLVCYKG-----HNYPVWDVQFNPQGHYFASSSHD--------RTARIWSMDRIQPLRI  500 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~-----h~~~V~~v~~sp~~~~l~sgs~d--------g~i~lwd~~~~~~~~~  500 (704)
                       .|+.+...+ +.++|..+++.......     ......++++.|+|++.++....        |.+..++.+ ++. ..
T Consensus        53 -~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~  128 (246)
T PF08450_consen   53 -RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TV  128 (246)
T ss_dssp             -EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EE
T ss_pred             -EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EE
Confidence             455555544 56669888755443332     34568899999999977776543        557777776 443 33


Q ss_pred             eccCCCCeeEEEEcCCCCEEE-EEECCCcEEEEeCCCCcE----EEEe---ecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277          501 MAGHLSDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGEC----VRIF---IGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (704)
Q Consensus       501 ~~~~~~~V~~v~~~p~~~~l~-tgs~dg~I~iwd~~~~~~----~~~~---~~h~~~i~~l~~spdg~~l~sg~~dg~I~  572 (704)
                      ........+.++|+|+++.|+ +-+..+.|..+++.....    .+.+   ....+..-.+++..+|++.++....+.|.
T Consensus       129 ~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~  208 (246)
T PF08450_consen  129 VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV  208 (246)
T ss_dssp             EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred             EecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence            333456678999999998776 456678899999863221    1222   22223488899999999888888899999


Q ss_pred             EEeCCCCeeeeeecCCCceeeeeee
Q 005277          573 MWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       573 iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      ++|.. |+.+..+......+++++|
T Consensus       209 ~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  209 VFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             EEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             EECCC-ccEEEEEcCCCCCEEEEEE
Confidence            99977 8888877655557788877

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.82  E-value=1.9e-06  Score=86.58  Aligned_cols=187  Identities=17%  Similarity=0.142  Sum_probs=126.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-ccCCC---C
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-AGHLS---D  507 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~-~~~~~---~  507 (704)
                      ++..+++++.++.+..||..+++.+..+.. ..++.... ...+..+++++.++.++.+|..+++.+... .....   .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            467788888999999999999999888775 22322221 224556777778889999999999998874 32211   1


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCC----------EEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM----------ILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~----------i~~l~~spdg~~l~sg~~dg~I~iwdl~  577 (704)
                      .........++.++++..++.|..+|.++|+.+.........          +.+-....++ .++.++.+|.+..+|+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~  191 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA  191 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC
Confidence            122223334788999999999999999999998888664422          1122222245 77777777754444999


Q ss_pred             CCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          578 SGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       578 ~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      +++.+-...  ...+..+ .                                  ...+..|+.++.++.|..||+.+++.
T Consensus       192 tg~~~w~~~--~~~~~~~-~----------------------------------~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  192 TGEKLWSKP--ISGIYSL-P----------------------------------SVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             TTEEEEEEC--SS-ECEC-E----------------------------------ECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             CCCEEEEec--CCCccCC-c----------------------------------eeeCCEEEEEeCCCEEEEEECCCCCE
Confidence            998654322  1112211 1                                  45677888888999999999999875


Q ss_pred             c
Q 005277          658 V  658 (704)
Q Consensus       658 ~  658 (704)
                      .
T Consensus       235 ~  235 (238)
T PF13360_consen  235 V  235 (238)
T ss_dssp             E
T ss_pred             E
Confidence            4

...

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.82  E-value=3.3e-08  Score=106.54  Aligned_cols=203  Identities=25%  Similarity=0.360  Sum_probs=147.9

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCC--cCeeEEEEcCCC--CEEEEEeCCCeEEEEECCCC-
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN--YPVWDVQFNPQG--HYFASSSHDRTARIWSMDRI-  495 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~--~~V~~v~~sp~~--~~l~sgs~dg~i~lwd~~~~-  495 (704)
                      .+++.++..+|.|+-++.++.-| +.+.|++..-..-.+-.|.  -.|-++.|+|+.  .+-++........+|++... 
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            46788899999999999998877 5566766543322222242  346778888853  34444555567788988543 


Q ss_pred             --ceeEEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCc-EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277          496 --QPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (704)
Q Consensus       496 --~~~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I  571 (704)
                        .....+.+|...|+.+.|+|. ...+++++.|-.+..||+++-. ++..+..-....+.++|+-....+.+.+....|
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i  182 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI  182 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence              233455689999999999985 5688999999999999998753 455444444566789998754445555666789


Q ss_pred             EEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEE
Q 005277          572 MMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLW  650 (704)
Q Consensus       572 ~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iW  650 (704)
                      .+||++.| .++..+++|...|.+++|.                                 ...-..+.+.+.||+|++|
T Consensus       183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fn---------------------------------r~~~s~~~s~~~d~tvkfw  229 (1081)
T KOG0309|consen  183 FVWDLRKGSTPLCSLKGHVSSVNSIDFN---------------------------------RFKYSEIMSSSNDGTVKFW  229 (1081)
T ss_pred             EEEeccCCCcceEEecccceeeehHHHh---------------------------------hhhhhhhcccCCCCceeee
Confidence            99999876 5778889999999999883                                 3334578899999999999


Q ss_pred             eCCCCcc
Q 005277          651 DVTTSTK  657 (704)
Q Consensus       651 d~~~~~~  657 (704)
                      |......
T Consensus       230 ~y~kSt~  236 (1081)
T KOG0309|consen  230 DYSKSTT  236 (1081)
T ss_pred             ccccccc
Confidence            9987654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.80  E-value=3.6e-09  Score=115.62  Aligned_cols=199  Identities=17%  Similarity=0.239  Sum_probs=149.3

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      +|..|....+|++||-+.+.|++|+..|.|+++++.++                            .......+|..+|+
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG----------------------------~~e~s~ncH~SavT 1147 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG----------------------------SMEESVNCHQSAVT 1147 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCc----------------------------cccccccccccccc
Confidence            57788899999999999999999999999999998862                            22334567999999


Q ss_pred             EEEEcCCCCEEEEEeCCC--eEEEEeCCC-CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277          426 SASFSPLGDFILSSSADT--TIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg--~I~lwd~~~-~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~  502 (704)
                      -+.-+.+|..+++.+.-.  -..+|++.+ +...++|.+    -.++.|+.....-+.|+....+.+||+.+..++..+-
T Consensus      1148 ~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1148 LVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred             cccccCCcceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhc
Confidence            999999999877554433  478999864 444555543    3478898765555666666789999999988876632


Q ss_pred             -c---CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          503 -G---HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       503 -~---~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                       +   ....-++..|+|...+++-   ||  .+||++..+.++.|...+..+ .-.|+|.|.-++..+.     |||+++
T Consensus      1224 t~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1224 TDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred             CcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHH
Confidence             1   2223478899998887763   44  489999888888776544322 3469999999888764     899999


Q ss_pred             CeeeeeecC
Q 005277          579 GRCVTPLMG  587 (704)
Q Consensus       579 ~~~~~~~~~  587 (704)
                      .+.+.....
T Consensus      1293 F~lLh~VP~ 1301 (1516)
T KOG1832|consen 1293 FKLLHSVPS 1301 (1516)
T ss_pred             HHHHhcCcc
Confidence            887766543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.75  E-value=1.8e-05  Score=80.17  Aligned_cols=215  Identities=15%  Similarity=0.156  Sum_probs=136.7

Q ss_pred             EEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEc-CCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277          426 SASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN-PQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       426 ~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~s-p~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~  503 (704)
                      ++.|.+ ++.++++-...+.|..|+..++.... +....  ...+.+. +++. ++.+...+ +.++|..+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEeec
Confidence            578888 66666677788999999998765543 33222  6677777 5654 55555544 55569888755444332


Q ss_pred             -----CCCCeeEEEEcCCCCEEEEEECC--------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEE-EEeCCC
Q 005277          504 -----HLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA-SGDEDG  569 (704)
Q Consensus       504 -----~~~~V~~v~~~p~~~~l~tgs~d--------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~-sg~~dg  569 (704)
                           .....+.+++.|+|++.++....        |.|..++.. ++..... ..-...+.|+|+|+++.|+ +-+..+
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccc
Confidence                 33457889999999977776543        557888876 5544443 3345678999999999776 556778


Q ss_pred             eEEEEeCCCCee-------eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe
Q 005277          570 TIMMWDLASGRC-------VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS  642 (704)
Q Consensus       570 ~I~iwdl~~~~~-------~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs  642 (704)
                      .|..+++.....       +..+....+..-.+++                                  ..+|++.++..
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v----------------------------------D~~G~l~va~~  202 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV----------------------------------DSDGNLWVADW  202 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE----------------------------------BTTS-EEEEEE
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceE----------------------------------cCCCCEEEEEc
Confidence            899999853221       1112222223444555                                  88999888888


Q ss_pred             CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEc-cCCc-EEEE
Q 005277          643 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS-RRNL-LFAA  697 (704)
Q Consensus       643 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs-~~g~-~La~  697 (704)
                      ..+.|.+++-. ++..               ..+......+++++|. ++.. ++++
T Consensus       203 ~~~~I~~~~p~-G~~~---------------~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  203 GGGRIVVFDPD-GKLL---------------REIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             TTTEEEEEETT-SCEE---------------EEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             CCCEEEEECCC-ccEE---------------EEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            88999999977 4432               2222223478999994 5544 4444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.73  E-value=1.2e-08  Score=111.80  Aligned_cols=220  Identities=16%  Similarity=0.237  Sum_probs=159.4

Q ss_pred             ccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC-C-eEE
Q 005277          411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-R-TAR  488 (704)
Q Consensus       411 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d-g-~i~  488 (704)
                      .+.++.+..|....+|++|+-+.++|+.|+..|.|+++++.+|.....+.+|.++|+-+.-+.+|..+++.+.- . -..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            34556677899999999999999999999999999999999999999999999999999999999887766532 2 577


Q ss_pred             EEECCC-CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-ec---CCCCEEEEEEecCCCEEE
Q 005277          489 IWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IG---HRSMILSLAMSPDGRYMA  563 (704)
Q Consensus       489 lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~---h~~~i~~l~~spdg~~l~  563 (704)
                      +|++.. +.+...|.    .-.++.|+.....-+.|+......+||+.++..+.++ .+   .+..-++..|+|+..++.
T Consensus      1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            899864 44444444    3457888766555566766678999999999877653 21   222346788999988775


Q ss_pred             EEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277          564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA  643 (704)
Q Consensus       564 sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~  643 (704)
                         .||  .+||++..+.+..+...+..+. -.|                                  +|.|..++.-+.
T Consensus      1247 ---ndG--vLWDvR~~~aIh~FD~ft~~~~-G~F----------------------------------HP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDYGG-GGF----------------------------------HPSGNEVIINSE 1286 (1516)
T ss_pred             ---eCc--eeeeeccHHHHhhhhhheeccc-ccc----------------------------------cCCCceEEeech
Confidence               466  5799998877776654332111 123                                  999998887764


Q ss_pred             CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEE
Q 005277          644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA  696 (704)
Q Consensus       644 Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La  696 (704)
                           |||+.+-..               +.+.|..+  -..|.|+..|.++.
T Consensus      1287 -----IwD~RTF~l---------------Lh~VP~Ld--qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1287 -----IWDMRTFKL---------------LHSVPSLD--QCAVTFNSTGDVMY 1317 (1516)
T ss_pred             -----hhhhHHHHH---------------HhcCcccc--ceEEEeccCccchh
Confidence                 899988543               33333322  24566777776553

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.72  E-value=5.9e-06  Score=89.46  Aligned_cols=186  Identities=13%  Similarity=0.077  Sum_probs=122.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeE-EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCee-
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD-VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD-  509 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~-v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~-  509 (704)
                      ++..++.++.+|.+..+|..+++.+....... .+.+ ...  .+..++.++.+|.+..||.++++.+..+......+. 
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~  180 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL  180 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence            36778888899999999999999887665332 2221 111  345677788899999999999988776653322111 


Q ss_pred             ----EEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC----C---EEEEEEec--CCCEEEEEeCCCeEEEEeC
Q 005277          510 ----CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS----M---ILSLAMSP--DGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       510 ----~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~----~---i~~l~~sp--dg~~l~sg~~dg~I~iwdl  576 (704)
                          +...  .+..++.++.+|.+..+|.++|+.+........    .   ...+.-+|  .+..+++++.+|.+..||.
T Consensus       181 ~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~  258 (377)
T TIGR03300       181 RGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL  258 (377)
T ss_pred             cCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence                1111  134678888899999999999987765431100    0   00111111  3567888888999999999


Q ss_pred             CCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          577 ASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       577 ~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                      .+|+.+...... . ....                                    ...+..++.++.||.|..+|..+++
T Consensus       259 ~tG~~~W~~~~~-~-~~~p------------------------------------~~~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       259 RSGRVLWKRDAS-S-YQGP------------------------------------AVDDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             CCCcEEEeeccC-C-ccCc------------------------------------eEeCCEEEEECCCCeEEEEECCCCc
Confidence            999766444310 0 0000                                    2346678888899999999999887


Q ss_pred             cccc
Q 005277          657 KVLK  660 (704)
Q Consensus       657 ~~~~  660 (704)
                      ....
T Consensus       301 ~~W~  304 (377)
T TIGR03300       301 ELWK  304 (377)
T ss_pred             EEEc
Confidence            6544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=5.4e-07  Score=98.85  Aligned_cols=154  Identities=15%  Similarity=0.198  Sum_probs=119.8

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~  500 (704)
                      ...++|++++  +++++-|+.+|.|++.+... .. .+...|...      ..+|.|+++|+.||++.|..+.+.+....
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            3567777877  78999999999999999873 33 444445443      55899999999999999999988777766


Q ss_pred             eccCCCCeeEEEEcCC-----CCEEEEEECCCcEEEEeCC---CCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277          501 MAGHLSDVDCVRWHIN-----CNYIATGSSDKTVRLWDVS---SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (704)
Q Consensus       501 ~~~~~~~V~~v~~~p~-----~~~l~tgs~dg~I~iwd~~---~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~  572 (704)
                      +. ...++.+|+++|+     .+.+++|+..| +.++.-+   ....+ ......++|.++.|  .|.++|-++.+| |+
T Consensus       109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWand~G-v~  182 (846)
T KOG2066|consen  109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWANDDG-VK  182 (846)
T ss_pred             Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe--cCcEEEEecCCC-cE
Confidence            65 4478999999997     67899999888 7777543   22222 35566789999999  588999998888 99


Q ss_pred             EEeCCCCeeeeeecCCCc
Q 005277          573 MWDLASGRCVTPLMGHTS  590 (704)
Q Consensus       573 iwdl~~~~~~~~~~~h~~  590 (704)
                      +||+.+++.+..+.....
T Consensus       183 vyd~~~~~~l~~i~~p~~  200 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIPPPSQ  200 (846)
T ss_pred             EEeccccceeeccCCCCC
Confidence            999999988877764433

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.69  E-value=1.1e-06  Score=84.62  Aligned_cols=201  Identities=15%  Similarity=0.098  Sum_probs=129.4

Q ss_pred             CCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcC-----CCCEEEEEeCCCeEEEEECCCCc-eeEEeccCCCCeeEEE
Q 005277          441 ADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNP-----QGHYFASSSHDRTARIWSMDRIQ-PLRIMAGHLSDVDCVR  512 (704)
Q Consensus       441 ~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp-----~~~~l~sgs~dg~i~lwd~~~~~-~~~~~~~~~~~V~~v~  512 (704)
                      ....+-+|++-+..  .+..+.       .+.|-|     ...+++.|+..|...+|...+.+ .......|...|+-+.
T Consensus        50 ~t~sv~i~~~y~N~~~iv~~y~-------g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~  122 (344)
T KOG4532|consen   50 KTISVPINSHYSNPKGIVEFYT-------GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK  122 (344)
T ss_pred             ceeeeEeccccCCchhhEEeee-------cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence            33457777776543  233332       344444     45689999999999999998644 3333344444433221


Q ss_pred             -EcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC-ee-eeee-cCC
Q 005277          513 -WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RC-VTPL-MGH  588 (704)
Q Consensus       513 -~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~-~~-~~~~-~~h  588 (704)
                       ..-..--+..++.|.++++.++.-+..-.......-.+.++.+++|++++++.+....|..|.+... .. +... ..-
T Consensus       123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t  202 (344)
T KOG4532|consen  123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT  202 (344)
T ss_pred             hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence             1112334667778888888887644332222111123889999999999999999999999988643 22 2212 222


Q ss_pred             CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcc
Q 005277          589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTN  668 (704)
Q Consensus       589 ~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~  668 (704)
                      ...-.+.+|                                  +.....+|++..||++.|||+.....+..        
T Consensus       203 ~D~gF~~S~----------------------------------s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~--------  240 (344)
T KOG4532|consen  203 SDHGFYNSF----------------------------------SENDLQFAVVFQDGTCAIYDVRNMATPMA--------  240 (344)
T ss_pred             CCCceeeee----------------------------------ccCcceEEEEecCCcEEEEEecccccchh--------
Confidence            233345556                                  77888999999999999999987543321        


Q ss_pred             ccccccccCCCCcCeEEEEEccCC
Q 005277          669 RLRSLKTLPTKSTPVYSLQFSRRN  692 (704)
Q Consensus       669 ~~~~l~~~~~~~~~V~~l~fs~~g  692 (704)
                        ....+-+.|.+.+..+.|++-|
T Consensus       241 --~~sstrp~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  241 --EISSTRPHHNGAFRVCRFSLYG  262 (344)
T ss_pred             --hhcccCCCCCCceEEEEecCCC
Confidence              1223456789999999999865

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.66  E-value=4.7e-07  Score=100.24  Aligned_cols=149  Identities=16%  Similarity=0.294  Sum_probs=118.8

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC---------CCeEEEEEC
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---------DRTARIWSM  492 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~---------dg~i~lwd~  492 (704)
                      +.|.-++.+  ++++.+|...|+|.+-|..+.+.+.++..|.+.|.++..  .|+.+++||.         |..|+|||+
T Consensus       178 ~~v~imR~N--nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL  253 (1118)
T KOG1275|consen  178 SGVTIMRYN--NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL  253 (1118)
T ss_pred             CceEEEEec--CcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence            346666654  889999999999999999999999999999999987766  6999999973         667899999


Q ss_pred             CCCceeEEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCC---CC-cEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          493 DRIQPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVS---SG-ECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~---~~-~~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      +..+.+.-+.-+.++ .-+.|+|. ...+++.+..|.+.+.|..   +. ..+..+......+..+++|++|+.|+.|..
T Consensus       254 Rmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~  332 (1118)
T KOG1275|consen  254 RMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH  332 (1118)
T ss_pred             hhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc
Confidence            887655544444333 56788986 5678889999999999943   22 223334444556999999999999999999


Q ss_pred             CCeEEEEe
Q 005277          568 DGTIMMWD  575 (704)
Q Consensus       568 dg~I~iwd  575 (704)
                      +|.|.+|-
T Consensus       333 ~g~v~~wa  340 (1118)
T KOG1275|consen  333 EGHVNLWA  340 (1118)
T ss_pred             cCcEeeec
Confidence            99999997

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=1.2e-07  Score=94.10  Aligned_cols=148  Identities=14%  Similarity=0.201  Sum_probs=117.6

Q ss_pred             EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-----ceeEEeccCCCCeeEE
Q 005277          437 LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-----QPLRIMAGHLSDVDCV  511 (704)
Q Consensus       437 ~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-----~~~~~~~~~~~~V~~v  511 (704)
                      ++.+.+..|-+-|+.++-.. .+. ..+.|.++.|...++.+..|+.+|.|..+|++..     .+...+. |.+.|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence            55566777888898876432 233 5678999999998999999999999999999864     3344443 88999998


Q ss_pred             EEcC-CCCEEEEEECCCcEEEEeCCCCcE---EEEeecCCCCEEE--EEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277          512 RWHI-NCNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMILS--LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       512 ~~~p-~~~~l~tgs~dg~I~iwd~~~~~~---~~~~~~h~~~i~~--l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                      ..-. ++++|.+.+.+|+|.+||++--++   +..+.||-+.-.-  +-+.+....+++++.|...+||.++.|..+.++
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            8766 788999999999999999997666   8999998664322  334556678888999999999999999999887


Q ss_pred             cC
Q 005277          586 MG  587 (704)
Q Consensus       586 ~~  587 (704)
                      ..
T Consensus       385 pf  386 (425)
T KOG2695|consen  385 PF  386 (425)
T ss_pred             CC
Confidence            53

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.64  E-value=4.2e-05  Score=77.48  Aligned_cols=207  Identities=16%  Similarity=0.166  Sum_probs=141.6

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCc-EEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          354 LNCASISQ-DGSLVAGGFSDSS-LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       354 V~~~~fs~-dg~~lasg~~dg~-I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      ...++.+| .+..+|.+-.-|. ..+||..+........                    ...-+.+.||      -.||+
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~--------------------a~~gRHFyGH------g~fs~   60 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW--------------------APPGRHFYGH------GVFSP   60 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc--------------------CCCCCEEecC------EEEcC
Confidence            34567788 5667777777665 6778876633222111                    1122445666      46999


Q ss_pred             CCCEEEEEe-----CCCeEEEEeCC-CCceeEEeecCCcCeeEEEEcCCCCEEEEEe------------------CCCeE
Q 005277          432 LGDFILSSS-----ADTTIRLWSTK-LNANLVCYKGHNYPVWDVQFNPQGHYFASSS------------------HDRTA  487 (704)
Q Consensus       432 ~~~~l~s~s-----~Dg~I~lwd~~-~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs------------------~dg~i  487 (704)
                      ||++|++.-     ..|.|-|||.. +...+..+..|.-.-..+.+.|+|..|+++.                  .+-++
T Consensus        61 dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL  140 (305)
T PF07433_consen   61 DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL  140 (305)
T ss_pred             CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence            999999863     45889999999 6677888888877778899999998888763                  23345


Q ss_pred             EEEECCCCceeEE--e--ccCCCCeeEEEEcCCCCEEEEEECCCc-------EEEEeCCCCcEEEEee-------cCCCC
Q 005277          488 RIWSMDRIQPLRI--M--AGHLSDVDCVRWHINCNYIATGSSDKT-------VRLWDVSSGECVRIFI-------GHRSM  549 (704)
Q Consensus       488 ~lwd~~~~~~~~~--~--~~~~~~V~~v~~~p~~~~l~tgs~dg~-------I~iwd~~~~~~~~~~~-------~h~~~  549 (704)
                      .+.|..+++.+..  +  ..|...|..+++.++|..++..-..|.       |.+++  .+..+..+.       .-.+.
T Consensus       141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y  218 (305)
T PF07433_consen  141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGY  218 (305)
T ss_pred             EEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCc
Confidence            5666777776655  3  237778999999999876665443332       34443  233233222       33578


Q ss_pred             EEEEEEecCCCEEEEEe-CCCeEEEEeCCCCeeeeeecCC
Q 005277          550 ILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGH  588 (704)
Q Consensus       550 i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~~~~~~~~~h  588 (704)
                      +-+|+++++|.++++.+ ..|.+.+||..+++.+....-.
T Consensus       219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~  258 (305)
T PF07433_consen  219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP  258 (305)
T ss_pred             eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC
Confidence            99999999998876555 6678999999999988766533

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.63  E-value=7.9e-06  Score=80.20  Aligned_cols=203  Identities=14%  Similarity=0.155  Sum_probs=115.0

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC-
Q 005277          355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG-  433 (704)
Q Consensus       355 ~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-  433 (704)
                      .-++||||+.+||.+...|+|+++|+.+........   ..                   .....-+..|-++.|.+.. 
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p---~~-------------------~~~~d~~~Aiagl~Fl~~~~  104 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP---AM-------------------SFPGDLSDAIAGLIFLEYKK  104 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc---cc-------------------ccCCccccceeeeEeecccc
Confidence            457899999999999999999999987522111100   00                   0001123556666665432 


Q ss_pred             -----CEEEEEeCCCeEEEEeCCC-----CceeEEee--c-CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277          434 -----DFILSSSADTTIRLWSTKL-----NANLVCYK--G-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (704)
Q Consensus       434 -----~~l~s~s~Dg~I~lwd~~~-----~~~~~~~~--~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~  500 (704)
                           ..|++-..+|.++-|-+..     .+....+.  . +...|.++.++|..+.|++||....      +.+ .   
T Consensus       105 s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~-~---  174 (282)
T PF15492_consen  105 SAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG-M---  174 (282)
T ss_pred             ccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc-c---
Confidence                 1355666677777766532     22233332  2 3678999999999888888764322      000 0   


Q ss_pred             eccCCCCeeEEEEcCCCCE-E-EEEECCC------cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277          501 MAGHLSDVDCVRWHINCNY-I-ATGSSDK------TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (704)
Q Consensus       501 ~~~~~~~V~~v~~~p~~~~-l-~tgs~dg------~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~  572 (704)
                      -......+++-..-.+..+ . ++...|+      +-.+|.+-+.+...........|..|..||||..||+...+|.|.
T Consensus       175 s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~ls  254 (282)
T PF15492_consen  175 SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLS  254 (282)
T ss_pred             ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEE
Confidence            0011111222111111111 1 1111111      123333333222221223457899999999999999999999999


Q ss_pred             EEeCCCCeeeeeecCCC
Q 005277          573 MWDLASGRCVTPLMGHT  589 (704)
Q Consensus       573 iwdl~~~~~~~~~~~h~  589 (704)
                      +|++.+-+.......+.
T Consensus       255 LW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  255 LWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             EEecCcchhhcccchhh
Confidence            99999887777665443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=2.9e-06  Score=93.24  Aligned_cols=180  Identities=14%  Similarity=0.263  Sum_probs=132.0

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      +.++|++++  ++++|.|+-+|.|++++....                             . .....|+..      ..
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------------~-~~~~~~s~~------~~   81 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------------P-KTNFDHSSS------IL   81 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCc-----------------------------c-ccccccccc------cc
Confidence            446677775  578999999999999997641                             1 122234433      56


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC-----CCEEEEEeCCCeEEEEECC---CCceeEEecc
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-----GHYFASSSHDRTARIWSMD---RIQPLRIMAG  503 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~-----~~~l~sgs~dg~i~lwd~~---~~~~~~~~~~  503 (704)
                      +|.+++|||.||+|.|-.+.+.+...++. ...++.+|+++|+     .+.|++||.-| +.++.-+   ....+ ....
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~  158 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSE  158 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeec
Confidence            79999999999999999999988888776 4568999999997     57899999888 7776432   11222 3455


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCC------EEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM------ILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~------i~~l~~spdg~~l~sg~~dg~I~iwdl~  577 (704)
                      ..++|.++.|+  |++||-++.+| |++||+.+++.+..+......      ...+.|.++.+ |+.|=.| +|+|..++
T Consensus       159 ~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  159 GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGD-SVKICSIK  233 (846)
T ss_pred             CccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCC-eEEEEEEe
Confidence            67899999995  77999987666 999999998887766543332      34577776554 5555444 68888887

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.59  E-value=1.4e-07  Score=90.38  Aligned_cols=162  Identities=18%  Similarity=0.233  Sum_probs=105.3

Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEeecCCcCeeEEEEcCCCCEEEEEe-----CCCeEEEE
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQGHYFASSS-----HDRTARIW  490 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~v~~sp~~~~l~sgs-----~dg~i~lw  490 (704)
                      +.-|+++-.+-+.+--+..++++..||.+.+.+.+.-..+ ..+..-...-.+.+....+..+.++.     .-+..+.|
T Consensus        85 ~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~  164 (319)
T KOG4714|consen   85 LAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYAN  164 (319)
T ss_pred             eeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeee
Confidence            3345544444344444667999999999999998752111 11111111112233333455555443     22345666


Q ss_pred             ECCCCceeEEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCc-EEEEeecCCCCEEEEEEec-CCCEEEEEeC
Q 005277          491 SMDRIQPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSP-DGRYMASGDE  567 (704)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~i~~l~~sp-dg~~l~sg~~  567 (704)
                      +++..+....-......|.+++-||. .+.+++|+.||.+.+||.++.. ++..+..|+.+|..+-|+| ++..|+++++
T Consensus       165 ~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se  244 (319)
T KOG4714|consen  165 TLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE  244 (319)
T ss_pred             cccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC
Confidence            66544333222223345999999996 4567788999999999999763 3445678999999999999 6889999999


Q ss_pred             CCeEEEEeCCC
Q 005277          568 DGTIMMWDLAS  578 (704)
Q Consensus       568 dg~I~iwdl~~  578 (704)
                      ||.+.-||..+
T Consensus       245 dGslw~wdas~  255 (319)
T KOG4714|consen  245 DGSLWHWDAST  255 (319)
T ss_pred             CCcEEEEcCCC
Confidence            99999999764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.51  E-value=0.00016  Score=73.32  Aligned_cols=199  Identities=14%  Similarity=0.134  Sum_probs=137.9

Q ss_pred             eEEEEEcC-CCCEEEEEeCCCe-EEEEeCCCCceeEEeecCCcCe--eEEEEcCCCCEEEEE-----eCCCeEEEEECC-
Q 005277          424 VYSASFSP-LGDFILSSSADTT-IRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASS-----SHDRTARIWSMD-  493 (704)
Q Consensus       424 V~~l~~sp-~~~~l~s~s~Dg~-I~lwd~~~~~~~~~~~~h~~~V--~~v~~sp~~~~l~sg-----s~dg~i~lwd~~-  493 (704)
                      .-.++.+| ....++.+-.-|+ ..+||..+++....+....+.-  -.-.|+++|++|++.     +..|.|-|||.. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            34577888 4455667777666 6779999988876665322221  135799999999986     356899999998 


Q ss_pred             CCceeEEeccCCCCeeEEEEcCCCCEEEEEE------------------CCCcEEEEeCCCCcEEEEee----cCCCCEE
Q 005277          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGS------------------SDKTVRLWDVSSGECVRIFI----GHRSMIL  551 (704)
Q Consensus       494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs------------------~dg~I~iwd~~~~~~~~~~~----~h~~~i~  551 (704)
                      +.+.+..+..|.-.-..+.+.|+|..|+++.                  ++.++...|..+|+.+....    -|...|.
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            6677778887777777888999998777753                  23456777888898877643    3777899


Q ss_pred             EEEEecCCCEEEEEeCCC-------eEEEEeCCCCeeeeeec-------CCCceeeeeeeeeeehccccccccccccccc
Q 005277          552 SLAMSPDGRYMASGDEDG-------TIMMWDLASGRCVTPLM-------GHTSCVWTLAYRFLLLVTNAYLKISDKVSTG  617 (704)
Q Consensus       552 ~l~~spdg~~l~sg~~dg-------~I~iwdl~~~~~~~~~~-------~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~  617 (704)
                      .+++.++|..++..-..|       .|-+++.  +..+..+.       .-.+.+-++++                    
T Consensus       167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~--------------------  224 (305)
T PF07433_consen  167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAA--------------------  224 (305)
T ss_pred             eEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEE--------------------
Confidence            999999998777655444       2333432  22222221       22355666666                    


Q ss_pred             eeeeeeeEEeecccCCCCCEEEEE-eCCCcEEEEeCCCCccc
Q 005277          618 FLFYSLTIIYFGCASCEGSLLASG-SADCTVKLWDVTTSTKV  658 (704)
Q Consensus       618 ~~~~~~~~~~~~~~s~~g~~lasg-s~Dg~V~iWd~~~~~~~  658 (704)
                                    +.++.++++. -.-|.+.+||..++..+
T Consensus       225 --------------~~~g~~ia~tsPrGg~~~~~d~~tg~~~  252 (305)
T PF07433_consen  225 --------------DRDGRLIAVTSPRGGRVAVWDAATGRLL  252 (305)
T ss_pred             --------------eCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence                          8888877544 46789999999988654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=1.5e-05  Score=88.33  Aligned_cols=213  Identities=10%  Similarity=0.112  Sum_probs=144.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC-eEEEEEcC
Q 005277          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-VYSASFSP  431 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp  431 (704)
                      .|+|  |++.+..+|.|+.+|.|.+.+-.                             ....+.++.+... |..+....
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-----------------------------~~~~~~fqa~~~siv~~L~~~~   75 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNSS-----------------------------FQLIRGFQAYEQSIVQFLYILN   75 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEeccc-----------------------------ceeeehheecchhhhhHhhccc
Confidence            4554  56888899999999999887733                             1223445566666 44444443


Q ss_pred             CCCEEEEEeCCC-----eEEEEeCCCC------cee--EEeec-----CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005277          432 LGDFILSSSADT-----TIRLWSTKLN------ANL--VCYKG-----HNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (704)
Q Consensus       432 ~~~~l~s~s~Dg-----~I~lwd~~~~------~~~--~~~~~-----h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~  493 (704)
                      +..+|++.+.|+     .+++|+++.-      .++  ..+.+     ...|+.+++.+.+-+.+|+|-.+|.|..+.-+
T Consensus        76 ~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD  155 (933)
T KOG2114|consen   76 KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD  155 (933)
T ss_pred             CceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc
Confidence            346788777664     4899998632      223  11112     35678999999999999999999999998532


Q ss_pred             ----CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-EEEEeecCCCCEEEEEEecCCCEEEEEeCC
Q 005277          494 ----RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (704)
Q Consensus       494 ----~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~l~sg~~d  568 (704)
                          .+...........+|+.+.+..++..++....-..|.+|.+.... .......|+..+.|..+++....+++++..
T Consensus       156 i~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e  235 (933)
T KOG2114|consen  156 ILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE  235 (933)
T ss_pred             chhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc
Confidence                233333334456799999999888774444445679999987433 244466778899999999765546555544


Q ss_pred             CeEEEEeCCCCeeeeeec-CCCceeeeeee
Q 005277          569 GTIMMWDLASGRCVTPLM-GHTSCVWTLAY  597 (704)
Q Consensus       569 g~I~iwdl~~~~~~~~~~-~h~~~V~sl~~  597 (704)
                       .+.+||.....+-..+. +|......+.+
T Consensus       236 -~l~fY~sd~~~~cfaf~~g~kk~~~~~~~  264 (933)
T KOG2114|consen  236 -FLYFYDSDGRGPCFAFEVGEKKEMLVFSF  264 (933)
T ss_pred             -eEEEEcCCCcceeeeecCCCeEEEEEEec
Confidence             69999987666666666 77765555544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=2.6e-06  Score=87.61  Aligned_cols=246  Identities=15%  Similarity=0.154  Sum_probs=165.9

Q ss_pred             CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC--C-ceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CCeEEEEECCCC
Q 005277          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKL--N-ANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRI  495 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~--~-~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg~i~lwd~~~~  495 (704)
                      |...|+.+.-. -.+++++++.||.++.|--..  + ..+..+..|...|.+++.+-++..+.|.+. |..++++|+++.
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            77777776554 467899999999999997653  1 334556788999999999999999999877 999999999876


Q ss_pred             ceeEEeccC--CCCeeEEEEcCCC---CEEEEE-ECCCcEEEEeCCCCc-EEE-EeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          496 QPLRIMAGH--LSDVDCVRWHINC---NYIATG-SSDKTVRLWDVSSGE-CVR-IFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       496 ~~~~~~~~~--~~~V~~v~~~p~~---~~l~tg-s~dg~I~iwd~~~~~-~~~-~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      ..+..+.-.  .+.+.++  +..|   ..|+++ -.+|.|.++|-.... ... .-.-|..+|.++.++|-+..+++...
T Consensus        87 DminmiKL~~lPg~a~wv--~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~  164 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWV--TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI  164 (558)
T ss_pred             chhhhcccccCCCceEEe--cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence            555333311  1222222  2222   134443 367899999987543 222 23458999999999999999999999


Q ss_pred             CCeEEEEeCCC------Ceeeeeec---------CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277          568 DGTIMMWDLAS------GRCVTPLM---------GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS  632 (704)
Q Consensus       568 dg~I~iwdl~~------~~~~~~~~---------~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  632 (704)
                      .|.|..|....      .+....++         .......++.+                                  +
T Consensus       165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Ef----------------------------------s  210 (558)
T KOG0882|consen  165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEF----------------------------------S  210 (558)
T ss_pred             cceeEeecCCCcccCccccccccccccchhhcccccccCccceEE----------------------------------c
Confidence            99999998763      11111111         11122334444                                  9


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccccccccCcc--------ccc---------cccccCCC-CcCeEEEEEccCCcE
Q 005277          633 CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTN--------RLR---------SLKTLPTK-STPVYSLQFSRRNLL  694 (704)
Q Consensus       633 ~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~--------~~~---------~l~~~~~~-~~~V~~l~fs~~g~~  694 (704)
                      |+|..+.+-+.|..|+++++.++..+..+.+.....        .+.         .-..+..+ ..+-....|...|.+
T Consensus       211 p~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~f  290 (558)
T KOG0882|consen  211 PDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNF  290 (558)
T ss_pred             cccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCE
Confidence            999999999999999999999998877664421100        000         00111122 344567889999999


Q ss_pred             EEEeecCC
Q 005277          695 FAAGALSK  702 (704)
Q Consensus       695 La~gs~dg  702 (704)
                      |..|+.-|
T Consensus       291 lly~t~~g  298 (558)
T KOG0882|consen  291 LLYGTILG  298 (558)
T ss_pred             EEeeccee
Confidence            98887543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.42  E-value=4.6e-05  Score=87.69  Aligned_cols=201  Identities=14%  Similarity=0.177  Sum_probs=135.6

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      +..+.|.++.|-.++.-++.++.+|.|.+-|..+..                             ......-.+.|.+++
T Consensus        66 ~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-----------------------------~eivg~vd~GI~aas  116 (1265)
T KOG1920|consen   66 DGDDEIVSVQFLADTNSICVITALGDIILVDPETLE-----------------------------LEIVGNVDNGISAAS  116 (1265)
T ss_pred             CCCcceEEEEEecccceEEEEecCCcEEEEcccccc-----------------------------eeeeeeccCceEEEe
Confidence            344679999999999999999999999998765421                             111122357899999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCC----C-------------------CceeEEeecCCc---------------------
Q 005277          429 FSPLGDFILSSSADTTIRLWSTK----L-------------------NANLVCYKGHNY---------------------  464 (704)
Q Consensus       429 ~sp~~~~l~s~s~Dg~I~lwd~~----~-------------------~~~~~~~~~h~~---------------------  464 (704)
                      |+||.+.++..+..+++.+-+-.    .                   |+.-..++|..+                     
T Consensus       117 wS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~  196 (1265)
T KOG1920|consen  117 WSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD  196 (1265)
T ss_pred             ecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhcc
Confidence            99999999988888887765421    0                   111112322111                     


Q ss_pred             CeeEEEEcCCCCEEEEEe----CC-CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE---CCCcEEEEeCCC
Q 005277          465 PVWDVQFNPQGHYFASSS----HD-RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSS  536 (704)
Q Consensus       465 ~V~~v~~sp~~~~l~sgs----~d-g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs---~dg~I~iwd~~~  536 (704)
                      .=++|.|--||.+||+..    .+ +.+++||-+ +..-..-....+--.+++|-|.|..+++-.   +|+.|.+|.- +
T Consensus       197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-N  274 (1265)
T KOG1920|consen  197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-N  274 (1265)
T ss_pred             CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-C
Confidence            123589999999999843    33 899999987 322222222333446899999999998843   5667888874 4


Q ss_pred             CcEEEE----eecCCCCEEEEEEecCCCEEEE---EeCCCeEEEEeCCCCe
Q 005277          537 GECVRI----FIGHRSMILSLAMSPDGRYMAS---GDEDGTIMMWDLASGR  580 (704)
Q Consensus       537 ~~~~~~----~~~h~~~i~~l~~spdg~~l~s---g~~dg~I~iwdl~~~~  580 (704)
                      |-....    +......|..++|+.++..|++   ......|++|-+.+..
T Consensus       275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            432222    2233345899999999999987   5555569999887653

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.42  E-value=8.6e-07  Score=61.40  Aligned_cols=39  Identities=62%  Similarity=1.108  Sum_probs=37.0

Q ss_pred             CcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277          537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (704)
Q Consensus       537 ~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwd  575 (704)
                      |+++..+.+|.+.|.+++|+|++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.39  E-value=0.00011  Score=80.14  Aligned_cols=187  Identities=10%  Similarity=-0.034  Sum_probs=118.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCee-EEEEcC--CCCEEEEEeCCCeEEEEECCCCceeEEeccCCC---
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW-DVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS---  506 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~-~v~~sp--~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~---  506 (704)
                      +..++.++.+|.+..+|..+++.+..+......+. ...-+|  .+..++.++.+|.+..+|..+++.+........   
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~  239 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA  239 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence            44577788889999999999998887764311100 000122  233567778889999999998877655431100   


Q ss_pred             ----CeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          507 ----DVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       507 ----~V~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                          ....+.-+|  .+..+++++.+|.+..+|..+|+.+.....  .....+..  .+..|+.++.+|.+..+|..+|+
T Consensus       240 ~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~  315 (394)
T PRK11138        240 TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGV  315 (394)
T ss_pred             cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCc
Confidence                011111122  355777788899999999999988765432  11122222  46678888899999999999987


Q ss_pred             eeeeecCCCcee-eeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 005277          581 CVTPLMGHTSCV-WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL  659 (704)
Q Consensus       581 ~~~~~~~h~~~V-~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~  659 (704)
                      .+-....-.... .+.                                    ...+..|+.++.||.|++.|..+++...
T Consensus       316 ~~W~~~~~~~~~~~sp------------------------------------~v~~g~l~v~~~~G~l~~ld~~tG~~~~  359 (394)
T PRK11138        316 ELWSQSDLLHRLLTAP------------------------------------VLYNGYLVVGDSEGYLHWINREDGRFVA  359 (394)
T ss_pred             EEEcccccCCCcccCC------------------------------------EEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            654332111110 000                                    1125678889999999999999887543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=1.7e-05  Score=80.77  Aligned_cols=81  Identities=12%  Similarity=0.297  Sum_probs=70.8

Q ss_pred             eeeccCCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEE
Q 005277          414 YTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWS  491 (704)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd  491 (704)
                      ...+.+|...|.+++|+|..+ ++..++.+..|+|.|+++...+..+..+ .++|+++|.-+. +++..|...|.|.+||
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence            446778889999999999888 6779999999999999999999999888 799999999854 5677778999999999


Q ss_pred             CCCC
Q 005277          492 MDRI  495 (704)
Q Consensus       492 ~~~~  495 (704)
                      ++..
T Consensus       265 ~R~~  268 (463)
T KOG1645|consen  265 MRQP  268 (463)
T ss_pred             ccCC
Confidence            9853

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.38  E-value=1.7e-05  Score=87.27  Aligned_cols=111  Identities=12%  Similarity=0.123  Sum_probs=86.1

Q ss_pred             EEEEEEcCCCCEEEEEeC----CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          354 LNCASISQDGSLVAGGFS----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~----dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      -+-..|+|...++|+++-    .|+|.||--.+.+                           ..-...   .-.+++++|
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtGEP---------------------------qr~Vt~---P~hatSLCW   67 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFADTGEP---------------------------QRDVTY---PVHATSLCW   67 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEecCCCC---------------------------Cccccc---ceehhhhcc
Confidence            344578898888888764    5788888532210                           000111   123567999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~  494 (704)
                      +|..-.|++|-.-|.+.+|...+.+.-.....|..+|..+.||++|..++++..-|.+.+|..+.
T Consensus        68 Hpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   68 HPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            99888888999999999999988777777778999999999999999999999999999998873

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.38  E-value=6.8e-06  Score=91.37  Aligned_cols=180  Identities=13%  Similarity=0.132  Sum_probs=134.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEE
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~  512 (704)
                      +..++.|+.-..+..+|+++.+......-..+.|.-+..  +++++.+|...|+|.+-|.++.+.+..+..|.+.|..+.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            345666666667888899988777666544545655554  689999999999999999999999999999999998776


Q ss_pred             EcCCCCEEEEEE---------CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC-CCEEEEEeCCCeEEEEeCC---CC
Q 005277          513 WHINCNYIATGS---------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLA---SG  579 (704)
Q Consensus       513 ~~p~~~~l~tgs---------~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~---~~  579 (704)
                      .  .|+.|++++         .|..|.+||+|.-+.+.-+.-+.++ .-+.|.|. ...+++++..|...+-|..   +.
T Consensus       225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP  301 (1118)
T KOG1275|consen  225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP  301 (1118)
T ss_pred             c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence            4  678888876         3667999999987766544444443 45677774 4578888899999999933   22


Q ss_pred             -eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEe
Q 005277          580 -RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD  651 (704)
Q Consensus       580 -~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd  651 (704)
                       ..+..+..-+..+..+++                                  |++|+.++.|..+|.|.+|.
T Consensus       302 ~~~~~~v~p~~s~i~~fDi----------------------------------Ssn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  302 PAGVKMVNPNGSGISAFDI----------------------------------SSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccceeEEccCCCcceeEEe----------------------------------cCCCceEEEecccCcEeeec
Confidence             112222223344666666                                  99999999999999999998

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.35  E-value=0.00018  Score=72.12  Aligned_cols=145  Identities=14%  Similarity=0.130  Sum_probs=102.5

Q ss_pred             CCeEEEEeCCCCceeEEeecCCcCeeEEE--EcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCE
Q 005277          442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQ--FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY  519 (704)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~--~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~  519 (704)
                      +|+|..||..+++.+..+..-. .+....  ..+++..+++++.++.+..||..+++.+..+.. ...+...- ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence            6899999999999988886411 122222  233566788888999999999999998877765 23222221 234567


Q ss_pred             EEEEECCCcEEEEeCCCCcEEEEe-ecCC---CCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCC
Q 005277          520 IATGSSDKTVRLWDVSSGECVRIF-IGHR---SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT  589 (704)
Q Consensus       520 l~tgs~dg~I~iwd~~~~~~~~~~-~~h~---~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~  589 (704)
                      +++++.++.|+.+|..+|+.+... ....   ..........++..++++..+|.|..+|+.+|+.+.......
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence            777778899999999999998884 3221   122333344458889999989999999999999987776533

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=2.7e-06  Score=87.51  Aligned_cols=273  Identities=14%  Similarity=0.119  Sum_probs=177.5

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      -|++.|+.+.- .-.+++.+++.||.++.|.-...                         .....+..+..|-+.|.+++
T Consensus         7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~i-------------------------sGvEfVKhFraHL~~I~sl~   60 (558)
T KOG0882|consen    7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRI-------------------------SGVEFVKHFRAHLGVILSLA   60 (558)
T ss_pred             cccceeeeEee-ehhheEEeeecchhhhhcCCCCc-------------------------cceeehhhhHHHHHHHHhhh
Confidence            35566665544 34679999999999999974320                         01234455678999999999


Q ss_pred             EcCCCCEEEEEeC-CCeEEEEeCCCCceeEEeecCCcCeeEEEEc-CCC---CEEEE-EeCCCeEEEEECCCCc-ee-EE
Q 005277          429 FSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFN-PQG---HYFAS-SSHDRTARIWSMDRIQ-PL-RI  500 (704)
Q Consensus       429 ~sp~~~~l~s~s~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~s-p~~---~~l~s-gs~dg~i~lwd~~~~~-~~-~~  500 (704)
                      .+-++.++.|.+. |..++++|+.+...+..++.-.-|= .+.|. ..|   ..+++ .-.++.+.++|-.... +. ..
T Consensus        61 ~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f  139 (558)
T KOG0882|consen   61 VSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF  139 (558)
T ss_pred             ccccceeEeeccCcccceeEEEeeccchhhhcccccCCC-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee
Confidence            9999998889777 9999999998765553333221111 12222 122   12333 3467899999976543 33 33


Q ss_pred             eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC------CcE---------EEEeecCCCCEEEEEEecCCCEEEEE
Q 005277          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------GEC---------VRIFIGHRSMILSLAMSPDGRYMASG  565 (704)
Q Consensus       501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~------~~~---------~~~~~~h~~~i~~l~~spdg~~l~sg  565 (704)
                      -.-|.++|.++.+.|-+..+++....|.|.-|....      .+.         +..+...+...+++.|+|+|..+.+-
T Consensus       140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl  219 (558)
T KOG0882|consen  140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL  219 (558)
T ss_pred             cccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence            346999999999999999999999999999998762      111         11223345678899999999999999


Q ss_pred             eCCCeEEEEeCCCCeeeeeecC-----C-----CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC
Q 005277          566 DEDGTIMMWDLASGRCVTPLMG-----H-----TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG  635 (704)
Q Consensus       566 ~~dg~I~iwdl~~~~~~~~~~~-----h-----~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  635 (704)
                      +.|..|++++..+|+.++.+..     |     .-.+..+.|.-......         ...  -.....-...|+...|
T Consensus       220 ~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaver---------ele--k~~~~~~~~~~fdes~  288 (558)
T KOG0882|consen  220 NPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVER---------ELE--KHGSTVGTNAVFDESG  288 (558)
T ss_pred             CcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHh---------hHh--hhcCcccceeEEcCCC
Confidence            9999999999999988876632     1     11223333311000000         000  0111112233457788


Q ss_pred             CEEEEEeCCCcEEEEeCCCCccccc
Q 005277          636 SLLASGSADCTVKLWDVTTSTKVLK  660 (704)
Q Consensus       636 ~~lasgs~Dg~V~iWd~~~~~~~~~  660 (704)
                      ++|+-|+-=| |+|.++.++.....
T Consensus       289 ~flly~t~~g-ikvin~~tn~v~ri  312 (558)
T KOG0882|consen  289 NFLLYGTILG-IKVINLDTNTVVRI  312 (558)
T ss_pred             CEEEeeccee-EEEEEeecCeEEEE
Confidence            8888887653 78888888765543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=8.5e-05  Score=82.64  Aligned_cols=169  Identities=15%  Similarity=0.193  Sum_probs=114.8

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcC-eeEEEEcCCCCEEEEEeCCC-----eEEEEECCCC------
Q 005277          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP-VWDVQFNPQGHYFASSSHDR-----TARIWSMDRI------  495 (704)
Q Consensus       428 ~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~-V~~v~~sp~~~~l~sgs~dg-----~i~lwd~~~~------  495 (704)
                      +|++.+..++.|+.+|.|.+.+-. .+.+..++.+... |..+....+..++++.+.|+     .+++|+++..      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            467788899999999998887754 3444667777666 44444433446777766554     5899999643      


Q ss_pred             cee---EEec----cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC----CCcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277          496 QPL---RIMA----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS----SGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       496 ~~~---~~~~----~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~----~~~~~~~~~~h~~~i~~l~~spdg~~l~s  564 (704)
                      .++   +.+.    ....++.+++.|.+-+.+|+|-.+|.|..+.-.    .|...........+|+.+++..++..++-
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            222   2222    134678899999999999999999999998421    12222223344679999999999987444


Q ss_pred             EeCCCeEEEEeCCCCee-eeeecCCCceeeeeee
Q 005277          565 GDEDGTIMMWDLASGRC-VTPLMGHTSCVWTLAY  597 (704)
Q Consensus       565 g~~dg~I~iwdl~~~~~-~~~~~~h~~~V~sl~~  597 (704)
                      +.....|.+|.+....+ ...+..|+.++.|.++
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~  222 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSF  222 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCccceeeec
Confidence            44455799999874332 4456777778887776

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.32  E-value=1.8e-06  Score=59.79  Aligned_cols=38  Identities=29%  Similarity=0.725  Sum_probs=36.2

Q ss_pred             ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277          454 ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (704)
Q Consensus       454 ~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd  491 (704)
                      +++..+.+|..+|++++|+|++.+|++|+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.26  E-value=0.00025  Score=76.47  Aligned_cols=112  Identities=22%  Similarity=0.313  Sum_probs=82.1

Q ss_pred             eeEEEEcC-CCCEEEEE----eCCCe----EEEEECCCCceeEE---eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEe
Q 005277          466 VWDVQFNP-QGHYFASS----SHDRT----ARIWSMDRIQPLRI---MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD  533 (704)
Q Consensus       466 V~~v~~sp-~~~~l~sg----s~dg~----i~lwd~~~~~~~~~---~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd  533 (704)
                      ..++.|+- +++.+.+.    +.+|.    -.+|++...+..+.   --...+.|.|++++|+...++.|+.||+|.+||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            35777776 44445543    23443    34566654432211   124678899999999999999999999999999


Q ss_pred             CCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277          534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (704)
Q Consensus       534 ~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~  579 (704)
                      ...+...  +....-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       288 ~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  288 TTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            8777433  3344567889999999999999999999999998754

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.25  E-value=0.00081  Score=72.00  Aligned_cols=204  Identities=19%  Similarity=0.223  Sum_probs=111.0

Q ss_pred             cCCCCEEEEEeC---------CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          360 SQDGSLVAGGFS---------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       360 s~dg~~lasg~~---------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      |||+++++....         .+.+.|||+.+..                             ...+......+....||
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~-----------------------------~~~l~~~~~~~~~~~~s   51 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE-----------------------------ITPLTPPPPKLQDAKWS   51 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE-----------------------------EEESS-EETTBSEEEE-
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc-----------------------------eEECcCCccccccceee
Confidence            688888877432         3567788877521                             12222225678899999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEE-eec-------C---------CcCeeEEEEcCCCCEEEEEeCC-C-------
Q 005277          431 PLGDFILSSSADTTIRLWSTKLNANLVC-YKG-------H---------NYPVWDVQFNPQGHYFASSSHD-R-------  485 (704)
Q Consensus       431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~-~~~-------h---------~~~V~~v~~sp~~~~l~sgs~d-g-------  485 (704)
                      |+|+.++-.. ++.|.+++..++...+. ..+       -         -..-..+.|||++++|+....| .       
T Consensus        52 P~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen   52 PDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred             cCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence            9999988776 46899999877643321 112       0         1123568899999998876422 1       


Q ss_pred             ----------------------------eEEEEECCCCceeEE--e---ccCCCCeeEEEEcCCCCEEEEE--ECC---C
Q 005277          486 ----------------------------TARIWSMDRIQPLRI--M---AGHLSDVDCVRWHINCNYIATG--SSD---K  527 (704)
Q Consensus       486 ----------------------------~i~lwd~~~~~~~~~--~---~~~~~~V~~v~~~p~~~~l~tg--s~d---g  527 (704)
                                                  .+.++|+.+++....  .   .....-+..+.|.+++..|+..  +.+   .
T Consensus       131 ~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~  210 (353)
T PF00930_consen  131 PDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRL  210 (353)
T ss_dssp             EEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEE
T ss_pred             eccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEE
Confidence                                        133344444433211  1   1223346788999998844443  332   2


Q ss_pred             cEEEEeCCCCcEEEEeec-CCCCE---EEEEEe-cCCC-EEEEEeCCCe--EEEEeCCCCeeeeeecCCCceeee
Q 005277          528 TVRLWDVSSGECVRIFIG-HRSMI---LSLAMS-PDGR-YMASGDEDGT--IMMWDLASGRCVTPLMGHTSCVWT  594 (704)
Q Consensus       528 ~I~iwd~~~~~~~~~~~~-h~~~i---~~l~~s-pdg~-~l~sg~~dg~--I~iwdl~~~~~~~~~~~h~~~V~s  594 (704)
                      .+.++|..++.+...... ..+.|   ....|. +++. +|.....||.  |.+++...+.. ..+....-.|..
T Consensus       211 ~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~  284 (353)
T PF00930_consen  211 DLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTS  284 (353)
T ss_dssp             EEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEE
T ss_pred             EEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecc
Confidence            367778877765443332 22222   345554 5554 5555556664  55556555543 344434444543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1333 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=7.4e-06  Score=75.27  Aligned_cols=114  Identities=21%  Similarity=0.313  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhccccccccccCChhhHHHHHHHHHHHHhhcc-
Q 005277            4 LQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSL-   82 (704)
Q Consensus         4 ~~~~~~v~~yl~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l-   82 (704)
                      +-+++.|.+||--|||+.|.++|.+|++..+.++       +.-..|-+.+... .+-.|-+.....+..|.+-|.++| 
T Consensus         6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~-------frvdrivdq~~~a-~q~~Dl~aLr~~W~~l~~r~Fs~Le   77 (241)
T KOG1333|consen    6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKG-------FRVDRIVDQLQQA-MQVYDLAALRDYWSYLERRLFSRLE   77 (241)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcC-------CcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4578999999999999999999999998765432       2233333333311 234578888999999999999999 


Q ss_pred             ccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHH
Q 005277           83 DLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHE  125 (704)
Q Consensus        83 d~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~  125 (704)
                      ++|++...++=-.+|-+....-|++++++.|.+||+|-+.+..
T Consensus        78 ~~y~~~~~kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lq  120 (241)
T KOG1333|consen   78 DIYRPTIHKLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQ  120 (241)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHh
Confidence            7999999999999999999999999999999999999987743

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.24  E-value=0.00017  Score=79.66  Aligned_cols=196  Identities=11%  Similarity=0.087  Sum_probs=112.9

Q ss_pred             CCCEEEEEeC-CCeEEEEeCCCCceeEEeec-CCcCeeE-------------------EEEcCCCCEEEE-EeCCCeEEE
Q 005277          432 LGDFILSSSA-DTTIRLWSTKLNANLVCYKG-HNYPVWD-------------------VQFNPQGHYFAS-SSHDRTARI  489 (704)
Q Consensus       432 ~~~~l~s~s~-Dg~I~lwd~~~~~~~~~~~~-h~~~V~~-------------------v~~sp~~~~l~s-gs~dg~i~l  489 (704)
                      ||+||+.-.. +..|-..+++..++-..+.- ....+..                   +-++|+|+.+.. .-..+.+.+
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv  219 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA  219 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence            6778876653 55666667766655433321 1111222                   223445554422 224466777


Q ss_pred             EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE----------------------------------------CCCcE
Q 005277          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS----------------------------------------SDKTV  529 (704)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs----------------------------------------~dg~I  529 (704)
                      .|.++.+....+.-. .....+.++|+|+++++.+                                        .++.|
T Consensus       220 ID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V  298 (635)
T PRK02888        220 VDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV  298 (635)
T ss_pred             EECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence            888876665554422 2445677788888887765                                        12457


Q ss_pred             EEEeCCC----C-cEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCCCeeee--eecCCCceeeeeeeeeee
Q 005277          530 RLWDVSS----G-ECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVT--PLMGHTSCVWTLAYRFLL  601 (704)
Q Consensus       530 ~iwd~~~----~-~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~~~~~--~~~~h~~~V~sl~~~~~~  601 (704)
                      .+.|.++    + ..+..+ .-......+.++|||+++++++ .+++|.|.|+.+.+...  .+.....-+-.+..    
T Consensus       299 ~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----  373 (635)
T PRK02888        299 PVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----  373 (635)
T ss_pred             EEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc----
Confidence            7777776    3 333333 3445678899999999887655 58999999998754311  01000000000000    


Q ss_pred             hccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          602 LVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                                           ...+-...+.++|+...|-..|..|..|++..
T Consensus       374 ---------------------GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 ---------------------GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ---------------------CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                                 00011111277888888889999999999987

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.18  E-value=6e-07  Score=96.06  Aligned_cols=198  Identities=14%  Similarity=0.251  Sum_probs=131.9

Q ss_pred             CCEEEEEEcCC--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          352 NGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       352 ~~V~~~~fs~d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      ..+.|++++-+  ..++++|..+|.|.+-.+.....                          .......+|..++++++|
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd--------------------------Ss~E~tp~~ar~Ct~lAw  110 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD--------------------------SSAEVTPGYARPCTSLAW  110 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCccc--------------------------ccceeccccccccccccc
Confidence            45677776654  45899999999999988764110                          112334568889999999


Q ss_pred             cCC-CCEEEEE----eCCCeEEEEeCCCCc--e--eEEeec-CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277          430 SPL-GDFILSS----SADTTIRLWSTKLNA--N--LVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       430 sp~-~~~l~s~----s~Dg~I~lwd~~~~~--~--~~~~~~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      ++- .+.|+.|    -.|..+.|||+.+.-  +  ...+.+ ......+++|..+.+.+.+|...+.+.++|++... .+
T Consensus       111 neLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~  189 (783)
T KOG1008|consen  111 NELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DS  189 (783)
T ss_pred             ccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hh
Confidence            984 4456655    346789999998761  1  122222 33445688999889999999999999999997421 11


Q ss_pred             EeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEe-CCCC-cEEEEeecCC----CCEEEEEEecC--CCEEEEEeCCCe
Q 005277          500 IMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWD-VSSG-ECVRIFIGHR----SMILSLAMSPD--GRYMASGDEDGT  570 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd-~~~~-~~~~~~~~h~----~~i~~l~~spd--g~~l~sg~~dg~  570 (704)
                      ...-.+..+..+...| .++|+++-. ||.|.+|| .++- +++.......    ..+..++|+|.  |...+..-..++
T Consensus       190 ~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~t  268 (783)
T KOG1008|consen  190 VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSIT  268 (783)
T ss_pred             hhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcce
Confidence            1122334566777888 788888776 99999999 4332 2222222222    24899999994  433334446688


Q ss_pred             EEEEeCC
Q 005277          571 IMMWDLA  577 (704)
Q Consensus       571 I~iwdl~  577 (704)
                      |+++|+.
T Consensus       269 Irlydi~  275 (783)
T KOG1008|consen  269 IRLYDIC  275 (783)
T ss_pred             EEEeccc
Confidence            9999985

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.16  E-value=0.00066  Score=75.13  Aligned_cols=149  Identities=13%  Similarity=0.018  Sum_probs=99.3

Q ss_pred             EEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-----------------------
Q 005277          427 ASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-----------------------  482 (704)
Q Consensus       427 l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-----------------------  482 (704)
                      +=++|||+.+. +.-..+.+.+.|..+.+...++.--. ....++++|+|.++++.+                       
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            34566776554 33345667777877766655554322 335567777777766654                       


Q ss_pred             -----------------CCCeEEEEECCC----C-ceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcE
Q 005277          483 -----------------HDRTARIWSMDR----I-QPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGEC  539 (704)
Q Consensus       483 -----------------~dg~i~lwd~~~----~-~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~  539 (704)
                                       .++.|.+.|..+    + ..+..+. -......+.++|||+++++++ .+.+|.+.|+.+.+.
T Consensus       277 ni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        277 NIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             chHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence                             234577777766    2 3333332 345567899999999988765 589999999987552


Q ss_pred             ------------EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          540 ------------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       540 ------------~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                                  +....-. -.....+|.++|+...+-.-|..|..||+..
T Consensus       356 ~~~~~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        356 LFDGKIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhccCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                        3333322 2345678999999888899999999999876

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.15  E-value=0.00066  Score=72.94  Aligned_cols=234  Identities=12%  Similarity=0.098  Sum_probs=129.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCC----------CCCCcccccC---CC--CCccceeec
Q 005277          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN----------DTTPREDIIG---PN--GRKRSYTLY  417 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~----------~~~~~~~~~~---~~--~~~~~~~~~  417 (704)
                      .|+++.|+++..-||+|...|.|.||.+................          ......++..   +.  ........+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999998899999999999999987643221000000000          0000001111   11  113344556


Q ss_pred             cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe--ec------CCcCeeEEEEcC-----CC---CEEEEE
Q 005277          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY--KG------HNYPVWDVQFNP-----QG---HYFASS  481 (704)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~--~~------h~~~V~~v~~sp-----~~---~~l~sg  481 (704)
                      ....++|++++.| |=-+++.|..+|++.|.|++....+..-  ..      ....|+++.|+-     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            6668999999998 5568999999999999999876665442  11      234678888863     33   468899


Q ss_pred             eCCCeEEEEECCC---Cce----eEEeccCCCCeeEEE-EcCC--------------------CCEEEEEECCCcEEEEe
Q 005277          482 SHDRTARIWSMDR---IQP----LRIMAGHLSDVDCVR-WHIN--------------------CNYIATGSSDKTVRLWD  533 (704)
Q Consensus       482 s~dg~i~lwd~~~---~~~----~~~~~~~~~~V~~v~-~~p~--------------------~~~l~tgs~dg~I~iwd  533 (704)
                      +..|.+.+|.+.-   +..    ......+.+.|..+. ++.+                    -+-+++...+..|+++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            9999999998741   111    111223455555544 3211                    02244445577899999


Q ss_pred             CCCCcEEEEeecCCCCEEEEEEe-----cCCCEEEEEeCCCeEEEEeCCCCeeeeeecC
Q 005277          534 VSSGECVRIFIGHRSMILSLAMS-----PDGRYMASGDEDGTIMMWDLASGRCVTPLMG  587 (704)
Q Consensus       534 ~~~~~~~~~~~~h~~~i~~l~~s-----pdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~  587 (704)
                      ..+.+.........-....+++-     ..+..|++-..+|.|+++.+..-+.+..+.-
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence            98887766554332333444553     3577889999999999999999888776654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.15  E-value=0.00014  Score=83.93  Aligned_cols=197  Identities=18%  Similarity=0.216  Sum_probs=135.8

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC----C---
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD----R---  494 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~----~---  494 (704)
                      +.|.++.|..+..-++.+..+|.|.+-|..+.... ....-...|.+++|+||+..++..+.++++.+-+-+    .   
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            68999999999999999999999999988765432 223346689999999999999999988888775431    0   


Q ss_pred             ----------------CceeEEeccCC---------------------CCeeEEEEcCCCCEEEEEE----CC-CcEEEE
Q 005277          495 ----------------IQPLRIMAGHL---------------------SDVDCVRWHINCNYIATGS----SD-KTVRLW  532 (704)
Q Consensus       495 ----------------~~~~~~~~~~~---------------------~~V~~v~~~p~~~~l~tgs----~d-g~I~iw  532 (704)
                                      ++....|.|..                     +.=..|+|.-||.++|+..    .+ +.|++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence                            01111122111                     1123589999999999832    23 789999


Q ss_pred             eCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe---CCCeEEEEeCCCCee----eeeecCCCceeeeeeeeeeehccc
Q 005277          533 DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD---EDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYRFLLLVTN  605 (704)
Q Consensus       533 d~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~---~dg~I~iwdl~~~~~----~~~~~~h~~~V~sl~~~~~~~~~~  605 (704)
                      |-. |..-.+-....+--.+++|-|.|..+++-.   .|+.|.++.- +|-.    ...+......|..+.|        
T Consensus       228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~W--------  297 (1265)
T KOG1920|consen  228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAW--------  297 (1265)
T ss_pred             ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeee--------
Confidence            976 544333333334456899999999998753   5567999983 4422    2223333445889999        


Q ss_pred             cccccccccccceeeeeeeEEeecccCCCCCEEEE---EeCCCcEEEEeCCCC
Q 005277          606 AYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS---GSADCTVKLWDVTTS  655 (704)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las---gs~Dg~V~iWd~~~~  655 (704)
                                                +.++.+||+   ......|++|-+.+-
T Consensus       298 --------------------------ns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  298 --------------------------NSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             --------------------------cCCCCceeeeecccccceEEEEEecCe
Confidence                                      888888887   444455999988764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.14  E-value=0.00061  Score=74.20  Aligned_cols=178  Identities=12%  Similarity=0.042  Sum_probs=114.8

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeecCCc-------CeeEEEEcC--CCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNY-------PVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-------~V~~v~~sp--~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      ..++.++.+|.+..+|..+++.+..+.....       ....+.-+|  .+..++.++.+|.+..+|..+++.+....- 
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-  284 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-  284 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-
Confidence            3466777889999999988877665431110       011122223  355677778899999999999887655431 


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC-CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeee
Q 005277          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~  583 (704)
                       .....+.  ..+..++.++.+|.+..+|..+|+.+.....-.. ...+..+  .+..|+.++.+|.|.+.|..+|+.+.
T Consensus       285 -~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~  359 (394)
T PRK11138        285 -GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA  359 (394)
T ss_pred             -CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence             1111122  2466788888999999999999987764432111 1222222  25678889999999999999998877


Q ss_pred             eecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277          584 PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV  652 (704)
Q Consensus       584 ~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~  652 (704)
                      ........+.+--                                   -..+..|+.++.||.|+.++.
T Consensus       360 ~~~~~~~~~~s~P-----------------------------------~~~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        360 QQKVDSSGFLSEP-----------------------------------VVADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEEcCCCcceeCC-----------------------------------EEECCEEEEEeCCceEEEEeC
Confidence            6654322222210                                   112457888899999988764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.03  E-value=0.00019  Score=79.31  Aligned_cols=70  Identities=14%  Similarity=0.276  Sum_probs=61.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (704)
                      +++++|+|..-.||.|-.-|.+.+|....                            .........|+.+|..+.||++|
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~----------------------------~e~htv~~th~a~i~~l~wS~~G  113 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNT----------------------------TETHTVVETHPAPIQGLDWSHDG  113 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCC----------------------------ceeeeeccCCCCCceeEEecCCC
Confidence            67899999999999999999999998765                            22334455799999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCC
Q 005277          434 DFILSSSADTTIRLWSTK  451 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~  451 (704)
                      ..++++..-|.|.+|..+
T Consensus       114 ~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  114 TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CeEEEcCCCceeEEEEee
Confidence            999999999999999876

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.00  E-value=0.0008  Score=73.29  Aligned_cols=220  Identities=15%  Similarity=0.112  Sum_probs=108.7

Q ss_pred             CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      ..-....++++|+|++++.+ .||...|+.........     .+......|.+.+ .+|+-...++|.++.--......
T Consensus        31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-
T ss_pred             CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccce
Confidence            33457899999999998885 46788888854443322     2344578899854 47777778999996322222222


Q ss_pred             EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~  579 (704)
                      .+... ..+..+-.   |..|+..+.+ .|.+||+.+++.++.+...  +|..+.|+++|.+++..+.+ .+.|++....
T Consensus       104 ~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~  175 (443)
T PF04053_consen  104 SIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLE  175 (443)
T ss_dssp             ----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred             EEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence            33221 23444432   7777777654 8999999999999988643  48999999999999998866 5777765432


Q ss_pred             -----------eeeeeecCCCceeeeeeee--eeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277          580 -----------RCVTPLMGHTSCVWTLAYR--FLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT  646 (704)
Q Consensus       580 -----------~~~~~~~~h~~~V~sl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~  646 (704)
                                 ..+..+..-...|.+..|.  .+...+...++.......+.+.+...........+..+.+.....|+.
T Consensus       176 ~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~~lkYl~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~  255 (443)
T PF04053_consen  176 AVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSNHLKYLVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGN  255 (443)
T ss_dssp             HHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TTEEEEEETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--
T ss_pred             hcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCCeEEEEEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCC
Confidence                       0222222223456666662  111222222222222222222222223333333444556666666666


Q ss_pred             EEEEeCCC
Q 005277          647 VKLWDVTT  654 (704)
Q Consensus       647 V~iWd~~~  654 (704)
                      |..+.+..
T Consensus       256 v~~~~ld~  263 (443)
T PF04053_consen  256 VISYELDL  263 (443)
T ss_dssp             EEEEE--H
T ss_pred             EEEEEECH
Confidence            66666543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.00  E-value=0.00029  Score=76.05  Aligned_cols=150  Identities=20%  Similarity=0.243  Sum_probs=94.9

Q ss_pred             CeeEEEEcC-CCCEEEEE----ECCCc----EEEEeCCCCcEEEE---eecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277          507 DVDCVRWHI-NCNYIATG----SSDKT----VRLWDVSSGECVRI---FIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (704)
Q Consensus       507 ~V~~v~~~p-~~~~l~tg----s~dg~----I~iwd~~~~~~~~~---~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw  574 (704)
                      ...++.|+- +++.+.+.    +.+|.    -++|++..++..+.   -......|.|++++|+...|+.|+.||.|.+|
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY  286 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence            335566664 33444432    23333    34566655433221   12567889999999999999999999999999


Q ss_pred             eCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          575 DLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       575 dl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                      |...+..  ......-..+.++|                                  +|+|.++++|+..|.+.+||+.-
T Consensus       287 D~~~~~t--~~~ka~~~P~~iaW----------------------------------Hp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  287 DTTRGVT--LLAKAEFIPTLIAW----------------------------------HPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EcCCCee--eeeeecccceEEEE----------------------------------cCCCcEEEEEcCCceEEEEEeec
Confidence            9876632  22233445677888                                  99999999999999999999976


Q ss_pred             Cccccccc-cccCccccccccccCCCCcCeEEEEEccCC
Q 005277          655 STKVLKTE-EKSGTNRLRSLKTLPTKSTPVYSLQFSRRN  692 (704)
Q Consensus       655 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g  692 (704)
                      .......- +.......-.+..+-.+...+..+.|++..
T Consensus       331 spi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~  369 (545)
T PF11768_consen  331 SPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP  369 (545)
T ss_pred             CccceeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence            54332221 111111112233444555667777787443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.97  E-value=0.0024  Score=61.94  Aligned_cols=70  Identities=19%  Similarity=0.043  Sum_probs=47.7

Q ss_pred             CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE-EEEEcCCCCEEEEEe
Q 005277          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY-SASFSPLGDFILSSS  440 (704)
Q Consensus       362 dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~s~s  440 (704)
                      -|++++.|+..|.+.+.+++++..                            +..+..- +.|. .....+++..+..|+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~----------------------------~w~f~~~-~~vk~~a~~d~~~glIycgs  112 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQ----------------------------IWNFVIL-ETVKVRAQCDFDGGLIYCGS  112 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhh----------------------------eeeeeeh-hhhccceEEcCCCceEEEec
Confidence            367899999999999888876321                            1111110 1111 223456788999999


Q ss_pred             CCCeEEEEeCCCCceeEEee
Q 005277          441 ADTTIRLWSTKLNANLVCYK  460 (704)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~  460 (704)
                      .|++.+..|..+..++...+
T Consensus       113 hd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen  113 HDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             CCCcEEEecccccceEEecc
Confidence            99999999999888776654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.96  E-value=5e-06  Score=89.20  Aligned_cols=174  Identities=18%  Similarity=0.339  Sum_probs=117.8

Q ss_pred             cCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCce--eEEeecCCcCeeEEEEcC-CCCEEEEEe----CCCeEEEEEC
Q 005277          422 GPVYSASFSPLGD--FILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNP-QGHYFASSS----HDRTARIWSM  492 (704)
Q Consensus       422 ~~V~~l~~sp~~~--~l~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~v~~sp-~~~~l~sgs----~dg~i~lwd~  492 (704)
                      ..+.|+++.-+.+  .++.|..+|.|.+-.++...-  .....+|..++++++|++ |.+.+|.|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            3466777665443  677899999999988764322  334567888999999999 566677663    4677999999


Q ss_pred             CCC--cee--EEec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec-CCCEEEEEe
Q 005277          493 DRI--QPL--RIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD  566 (704)
Q Consensus       493 ~~~--~~~--~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp-dg~~l~sg~  566 (704)
                      .+.  .|.  ..|. +......+++|-.+.+.+.+|...+.+.++|++...... ..-.+..+..+.++| .+.++++..
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svnTk~vqG~tVdp~~~nY~cs~~  215 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNTKYVQGITVDPFSPNYFCSNS  215 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhhhhhcccceecCCCCCceeccc
Confidence            875  222  1222 244566789999899999999999999999998332111 111234566788888 777877665


Q ss_pred             CCCeEEEEe-CCCC-eeeeeecCCC----ceeeeeee
Q 005277          567 EDGTIMMWD-LASG-RCVTPLMGHT----SCVWTLAY  597 (704)
Q Consensus       567 ~dg~I~iwd-l~~~-~~~~~~~~h~----~~V~sl~~  597 (704)
                       ||.|.+|| .++- .++..+....    ..+..++|
T Consensus       216 -dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ay  251 (783)
T KOG1008|consen  216 -DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAY  251 (783)
T ss_pred             -cCceeeccchhhhccHHHHHhhCCCCcccceeeEEe
Confidence             99999999 3332 2333332222    24777888

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=0.00013  Score=74.60  Aligned_cols=92  Identities=12%  Similarity=0.198  Sum_probs=78.1

Q ss_pred             EEEEeCCCCceeEEeecCCcCeeEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCC-CCEEEE
Q 005277          445 IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN-CNYIAT  522 (704)
Q Consensus       445 I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~-~~~l~t  522 (704)
                      |++.+..+.+....+.+|...|.+++|+|..+ ++..++.+..|.|.|+++...+..+..+ ..+++++|.-+ .++|..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            66666666666666778889999999999776 7888999999999999999888888877 88999999865 577888


Q ss_pred             EECCCcEEEEeCCCC
Q 005277          523 GSSDKTVRLWDVSSG  537 (704)
Q Consensus       523 gs~dg~I~iwd~~~~  537 (704)
                      |...|.|.+||++..
T Consensus       254 Gl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQP  268 (463)
T ss_pred             eccCceEEEEEccCC
Confidence            899999999999854

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.90  E-value=0.00079  Score=73.74  Aligned_cols=141  Identities=13%  Similarity=0.051  Sum_probs=90.1

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      ..+++.+........++..+..+.+..+..|++..++|+|+..|.|.|+-+.......                      
T Consensus        55 G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~----------------------  112 (726)
T KOG3621|consen   55 GSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD----------------------  112 (726)
T ss_pred             ceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc----------------------
Confidence            3455555544444444444455567778889999999999999999999887521110                      


Q ss_pred             CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg  485 (704)
                      .......-..|...|++++|++++..+++|...|.|.+-.+++.    ...+.+....++|-.+... ++..+++...  
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~--  189 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT--  189 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh--
Confidence            00011111238899999999999999999999999999988872    1123333445677677665 3333333322  


Q ss_pred             eEEEEECCCC
Q 005277          486 TARIWSMDRI  495 (704)
Q Consensus       486 ~i~lwd~~~~  495 (704)
                      ...+++++..
T Consensus       190 r~~Lc~tE~e  199 (726)
T KOG3621|consen  190 RCILCQTEAE  199 (726)
T ss_pred             hhheeecchh
Confidence            3455666543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.87  E-value=0.017  Score=64.64  Aligned_cols=152  Identities=10%  Similarity=0.164  Sum_probs=98.2

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeecCCcC--eeEEEEcC--CCCEEEEEe---------CCCeEEEEECCCCceeEE
Q 005277          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYP--VWDVQFNP--QGHYFASSS---------HDRTARIWSMDRIQPLRI  500 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~--V~~v~~sp--~~~~l~sgs---------~dg~i~lwd~~~~~~~~~  500 (704)
                      ..++.++.+|.|..+|..+++.+..+......  -..+.-+|  .+..++.++         .+|.+..+|..+++.+..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            57788888999999999999998877643221  01112222  224454553         368899999999988776


Q ss_pred             eccCCCC--------------------e-eEEEEcCCCCEEEEEECCC------------------cEEEEeCCCCcEEE
Q 005277          501 MAGHLSD--------------------V-DCVRWHINCNYIATGSSDK------------------TVRLWDVSSGECVR  541 (704)
Q Consensus       501 ~~~~~~~--------------------V-~~v~~~p~~~~l~tgs~dg------------------~I~iwd~~~~~~~~  541 (704)
                      +......                    + ...++.+.+..+++++.++                  .|.-+|..+|+.+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            6532110                    1 1234445567788887665                  69999999999988


Q ss_pred             EeecCCCCE------EEEEEe----cCCC---EEEEEeCCCeEEEEeCCCCeeeeee
Q 005277          542 IFIGHRSMI------LSLAMS----PDGR---YMASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       542 ~~~~h~~~i------~~l~~s----pdg~---~l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                      .+..-....      ....+.    -+|.   .+++++.+|.+...|..+|+.+-..
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~  327 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR  327 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence            764211110      111111    1343   6788889999999999999887654

The alignment model contains an 8-bladed beta-propeller.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.86  E-value=0.026  Score=61.90  Aligned_cols=214  Identities=16%  Similarity=0.149  Sum_probs=114.8

Q ss_pred             EEEEEEcCCCCEEEEEeC-CC----cEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          354 LNCASISQDGSLVAGGFS-DS----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~-dg----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      +....+||||+++|.+-+ .|    .|+++|+.++...                           ...+..  .....+.
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l---------------------------~d~i~~--~~~~~~~  176 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL---------------------------PDGIEN--PKFSSVS  176 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE---------------------------EEEEEE--EESEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc---------------------------CCcccc--cccceEE
Confidence            346789999999997743 34    4999998763110                           011111  1112399


Q ss_pred             EcCCCCEEEEEeCC-----------CeEEEEeCCCCcee--EEeecCCcC--eeEEEEcCCCCEEEEEeC---C-CeEEE
Q 005277          429 FSPLGDFILSSSAD-----------TTIRLWSTKLNANL--VCYKGHNYP--VWDVQFNPQGHYFASSSH---D-RTARI  489 (704)
Q Consensus       429 ~sp~~~~l~s~s~D-----------g~I~lwd~~~~~~~--~~~~~h~~~--V~~v~~sp~~~~l~sgs~---d-g~i~l  489 (704)
                      |.++++.|+....+           ..|+.|.+.+...-  ..+......  ...+..++++++++..+.   + ..+.+
T Consensus       177 W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~  256 (414)
T PF02897_consen  177 WSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYL  256 (414)
T ss_dssp             ECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEE
T ss_pred             EeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEE
Confidence            99998877655433           23788888876543  555554433  567889999999776542   2 35777


Q ss_pred             EECCCC----ceeEEeccCCCCeeEEEEcCCCCEEEEEE---CCCcEEEEeCCCCcE---EEEeecCCCCEEEEEEecCC
Q 005277          490 WSMDRI----QPLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSSGEC---VRIFIGHRSMILSLAMSPDG  559 (704)
Q Consensus       490 wd~~~~----~~~~~~~~~~~~V~~v~~~p~~~~l~tgs---~dg~I~iwd~~~~~~---~~~~~~h~~~i~~l~~spdg  559 (704)
                      .++...    .....+......+....-+.++.+++...   ..+.|...++.+...   ...+..+...+.-..+...+
T Consensus       257 ~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~  336 (414)
T PF02897_consen  257 LDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK  336 (414)
T ss_dssp             EECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET
T ss_pred             EeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC
Confidence            788764    23344444444444433333444444332   346677778876542   33555666543333334445


Q ss_pred             CEEEE-EeCCC--eEEEEeCCCCeeeeeec-CCCceeeeee
Q 005277          560 RYMAS-GDEDG--TIMMWDLASGRCVTPLM-GHTSCVWTLA  596 (704)
Q Consensus       560 ~~l~s-g~~dg--~I~iwdl~~~~~~~~~~-~h~~~V~sl~  596 (704)
                      .+|+. .-.++  .|+++|+..+.....+. .-.+.|..+.
T Consensus       337 ~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~  377 (414)
T PF02897_consen  337 DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVS  377 (414)
T ss_dssp             TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEE
T ss_pred             CEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccC
Confidence            55554 33443  68889988344433332 2234444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.82  E-value=0.0089  Score=59.84  Aligned_cols=198  Identities=12%  Similarity=0.169  Sum_probs=110.9

Q ss_pred             EeeCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          347 FINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg-~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      +.+-...+..++|+|+. +++|+....+.|...+.++  .                         ......+.+ .+..-
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G--~-------------------------vlr~i~l~g-~~D~E   68 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG--K-------------------------VLRRIPLDG-FGDYE   68 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----------------------------EEEEEE-SS--SSEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC--C-------------------------EEEEEeCCC-CCCce
Confidence            33445669999999984 5666666677776666542  0                         001112333 35678


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCce------eEEee-----cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNAN------LVCYK-----GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~------~~~~~-----~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~  494 (704)
                      +|++..++.++++.-.++.+.++++.....      ...+.     .++..+-.++|.|.++.|+.+-...-..+|.++.
T Consensus        69 gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~  148 (248)
T PF06977_consen   69 GITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG  148 (248)
T ss_dssp             EEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred             eEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence            899988888777776789999998843221      11221     2456689999999877777777766666776653


Q ss_pred             ---CceeEEe--------ccCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEEEEeecCC---------CCEEEE
Q 005277          495 ---IQPLRIM--------AGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHR---------SMILSL  553 (704)
Q Consensus       495 ---~~~~~~~--------~~~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~---------~~i~~l  553 (704)
                         ...+...        ......+.+++++|.. .+++.......|..+| .+|+.+..+.-..         ...-.|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGI  227 (248)
T PF06977_consen  149 FPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGI  227 (248)
T ss_dssp             TT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEE
T ss_pred             ccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEE
Confidence               2121111        1244568899999965 5555666778899999 6788776654322         257889


Q ss_pred             EEecCCCEEEEEeCCCeEEEE
Q 005277          554 AMSPDGRYMASGDEDGTIMMW  574 (704)
Q Consensus       554 ~~spdg~~l~sg~~dg~I~iw  574 (704)
                      +|.++|++.++ ++-+..+++
T Consensus       228 a~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  228 AFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             EE-TT--EEEE-ETTTEEEEE
T ss_pred             EECCCCCEEEE-cCCceEEEe
Confidence            99999965544 455555443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.82  E-value=0.0065  Score=66.17  Aligned_cols=168  Identities=13%  Similarity=0.100  Sum_probs=90.5

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------eEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~-------~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~  494 (704)
                      +.|.++.|+.+. .|++-..||+++++|+. |..       +....-....+....+..+|  ++.-..++.+.+..--.
T Consensus        81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~  156 (410)
T PF04841_consen   81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNID  156 (410)
T ss_pred             CCEEEEEECCCC-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCcc
Confidence            789999999754 56677789999999987 333       11111112223333343355  33333445444442211


Q ss_pred             Cc-eeEEeccCCCCee---------E-EEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEE
Q 005277          495 IQ-PLRIMAGHLSDVD---------C-VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA  563 (704)
Q Consensus       495 ~~-~~~~~~~~~~~V~---------~-v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~  563 (704)
                      .. ..+.+..-.....         . ..++.+....+....++.+.+.+-...+.   + ...+++..|++||+|++||
T Consensus       157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~iA  232 (410)
T PF04841_consen  157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKFIA  232 (410)
T ss_pred             ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCCEEE
Confidence            11 1111110000000         0 12333444444444445555333222111   1 2346899999999999999


Q ss_pred             EEeCCCeEEEEeCCCCeeeeeecCC-Cceeeeeee
Q 005277          564 SGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAY  597 (704)
Q Consensus       564 sg~~dg~I~iwdl~~~~~~~~~~~h-~~~V~sl~~  597 (704)
                      .-..+|.+.+.+..-.+.+..+... ......+.|
T Consensus       233 l~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~W  267 (410)
T PF04841_consen  233 LFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAW  267 (410)
T ss_pred             EEECCCCEEEEECcccceeEEeecCcCCCCcEEEE
Confidence            9999999999987666666555433 345556667

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.81  E-value=0.0018  Score=71.15  Aligned_cols=110  Identities=14%  Similarity=0.161  Sum_probs=83.0

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEE
Q 005277          358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL  437 (704)
Q Consensus       358 ~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~  437 (704)
                      +++-.+++++.|++-|.+.+|+-.....                           ......+-.+.+..+..+++..+++
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~~---------------------------~~~~~~~~~~~~~~~~vs~~e~lvA   92 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGEM---------------------------RKLKNEGATGITCVRSVSSVEYLVA   92 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchhh---------------------------hcccccCccceEEEEEecchhHhhh
Confidence            4455788999999999999998654211                           1111222445677778888888888


Q ss_pred             EEeCCCeEEEEeCCCCcee---EE---eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277          438 SSSADTTIRLWSTKLNANL---VC---YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (704)
Q Consensus       438 s~s~Dg~I~lwd~~~~~~~---~~---~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~  494 (704)
                      .|+..|.|.++-+......   ..   -+.|...|++++|++++..+++|...|.|.+-.++.
T Consensus        93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            9999999999988764321   11   124788999999999999999999999999988877

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.81  E-value=0.0049  Score=66.98  Aligned_cols=175  Identities=16%  Similarity=0.162  Sum_probs=106.9

Q ss_pred             eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe---CC-CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCE
Q 005277          444 TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS---HD-RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY  519 (704)
Q Consensus       444 ~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs---~d-g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~  519 (704)
                      .+.+-|.+ +.....+..-...+..-.|+|++..++..+   .. ..+.+++++++....... ..+.-..-+|+|+|+.
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~  251 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK  251 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence            34444444 445555555556777788999887755442   22 469999999887665554 2333445689999988


Q ss_pred             EEEEE-CCCc--EEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC-C--eEEEEeCCCCeeeeeecCCCceee
Q 005277          520 IATGS-SDKT--VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-G--TIMMWDLASGRCVTPLMGHTSCVW  593 (704)
Q Consensus       520 l~tgs-~dg~--I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d-g--~I~iwdl~~~~~~~~~~~h~~~V~  593 (704)
                      |+... .||.  |+++|+.++...+ +....+.-+.=.|+|||++++-.+.. |  .|.++|+..+.. ..+....+.-.
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~  329 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS  329 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence            87654 4555  6667887776444 44333334467899999998876543 3  466667665544 22222222111


Q ss_pred             eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC-Cc--EEEEeCCCCc
Q 005277          594 TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD-CT--VKLWDVTTST  656 (704)
Q Consensus       594 sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D-g~--V~iWd~~~~~  656 (704)
                      .-.|                                  +|+|++++..+.. |.  |.+.|+.++.
T Consensus       330 ~p~~----------------------------------SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         330 NPVW----------------------------------SPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CccC----------------------------------CCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            4444                                  9999998777643 44  5555555544

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=97.80  E-value=3.1e-05  Score=48.25  Aligned_cols=27  Identities=22%  Similarity=0.477  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHH
Q 005277            4 LQVVEFVATYLKKKGFSEAENALQAEI   30 (704)
Q Consensus         4 ~~~~~~v~~yl~~~~~~~~~~~~~~e~   30 (704)
                      ++||++|.+||.++||..|..+|++|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            589999999999999999999999985

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.78  E-value=0.0075  Score=60.36  Aligned_cols=168  Identities=16%  Similarity=0.180  Sum_probs=102.8

Q ss_pred             eccCCccCeEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeEEeecC-CcCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005277          416 LYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (704)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~-l~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~  493 (704)
                      .+.+-...+.+++|.|+... +++....+.|...+.. ++.+..+.-. .+..-+|++..++.++++.-.++.+.+++++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            34455567999999998664 5566777888888875 7777776543 3567789998888777776678999999884


Q ss_pred             CCc------eeEEec-----cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC---CcEEEEe--------ecCCCCEE
Q 005277          494 RIQ------PLRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS---GECVRIF--------IGHRSMIL  551 (704)
Q Consensus       494 ~~~------~~~~~~-----~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~---~~~~~~~--------~~h~~~i~  551 (704)
                      ...      ....+.     .+...+..++|.|.++.|+++-......+|.+..   ...+...        ......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321      111221     2445689999999988888887777777776653   2222111        11334688


Q ss_pred             EEEEecC-CCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277          552 SLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       552 ~l~~spd-g~~l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                      +++++|. |.+++....+..|.++| .+|+.+..+
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~  208 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL  208 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence            9999995 66777788889999999 677776655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.74  E-value=0.0098  Score=61.65  Aligned_cols=207  Identities=12%  Similarity=0.166  Sum_probs=128.2

Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE
Q 005277          358 SISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI  436 (704)
Q Consensus       358 ~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l  436 (704)
                      .|.++.. ++.+--..+.|.-|+..+..                             ...+ .+.+.+.++..-..+..|
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~-----------------------------~~~~-~~p~~~~~~~~~d~~g~L   80 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGK-----------------------------KRVF-PSPGGFSSGALIDAGGRL   80 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCc-----------------------------eEEE-ECCCCcccceeecCCCeE
Confidence            4666655 55555567778778765311                             1111 122333444444444555


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEee----c-CCcCeeEEEEcCCCCEEEEEeC---------CCeEEEEECC-CCceeEEe
Q 005277          437 LSSSADTTIRLWSTKLNANLVCYK----G-HNYPVWDVQFNPQGHYFASSSH---------DRTARIWSMD-RIQPLRIM  501 (704)
Q Consensus       437 ~s~s~Dg~I~lwd~~~~~~~~~~~----~-h~~~V~~v~~sp~~~~l~sgs~---------dg~i~lwd~~-~~~~~~~~  501 (704)
                      +++..  .+.+++.+++..+..+.    + ......++...|+|.+.++...         -..-.+|-++ .+..++.+
T Consensus        81 v~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~  158 (307)
T COG3386          81 IACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL  158 (307)
T ss_pred             EEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee
Confidence            55543  36777776555532221    1 1245668888999886655433         1122455555 56677777


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCC--C----cE-EEEeecCCCCEEEEEEecCCCEEEEEeCCC-eEE
Q 005277          502 AGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSS--G----EC-VRIFIGHRSMILSLAMSPDGRYMASGDEDG-TIM  572 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~~--~----~~-~~~~~~h~~~i~~l~~spdg~~l~sg~~dg-~I~  572 (704)
                      ..+...-+.++|+|+++.|+.+.. .+.|+-|++..  +    +. ...+....+..-.++...+|.+.+++..+| .|.
T Consensus       159 ~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~  238 (307)
T COG3386         159 DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVV  238 (307)
T ss_pred             cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEE
Confidence            766777789999999988887765 47788887752  1    11 122223456667788888888776555554 899


Q ss_pred             EEeCCCCeeeeeecCCCceeeeeee
Q 005277          573 MWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       573 iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      +|+.. |+++..+......+++++|
T Consensus       239 ~~~pd-G~l~~~i~lP~~~~t~~~F  262 (307)
T COG3386         239 RFNPD-GKLLGEIKLPVKRPTNPAF  262 (307)
T ss_pred             EECCC-CcEEEEEECCCCCCccceE
Confidence            99987 9998888777677777777

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.67  E-value=0.029  Score=58.97  Aligned_cols=155  Identities=12%  Similarity=0.046  Sum_probs=79.8

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEc--CCCCEEEEEe---------------------
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN--PQGHYFASSS---------------------  482 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~s--p~~~~l~sgs---------------------  482 (704)
                      +..++|+++.++-......|+-.|+.+.+....+......+-...|.  .++..++-.-                     
T Consensus        85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a  164 (386)
T PF14583_consen   85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA  164 (386)
T ss_dssp             T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred             ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence            46677888887655555688999999988877777666666556664  3555544321                     


Q ss_pred             -CCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC----CC-cEEEEeCC-CCcEEEEeecCC--CCEEEE
Q 005277          483 -HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS----DK-TVRLWDVS-SGECVRIFIGHR--SMILSL  553 (704)
Q Consensus       483 -~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~----dg-~I~iwd~~-~~~~~~~~~~h~--~~i~~l  553 (704)
                       ....|.-.|+.+++....+. ....+..+.|+|...-+++=|.    +. .-|||-++ .|...+.+..+.  ..+..=
T Consensus       165 ~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHE  243 (386)
T PF14583_consen  165 RPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHE  243 (386)
T ss_dssp             ---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEE
T ss_pred             CCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccc
Confidence             12345556777776655554 4566788999996555544332    22 23666554 233344343332  234555


Q ss_pred             EEecCCCEEEEEe-----CCCeEEEEeCCCCee
Q 005277          554 AMSPDGRYMASGD-----EDGTIMMWDLASGRC  581 (704)
Q Consensus       554 ~~spdg~~l~sg~-----~dg~I~iwdl~~~~~  581 (704)
                      -|.|||..|.--+     .+..|.-+|+.+++.
T Consensus       244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~  276 (386)
T PF14583_consen  244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER  276 (386)
T ss_dssp             EE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred             cccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence            7899998765422     244566677777644

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.65  E-value=0.006  Score=65.64  Aligned_cols=208  Identities=13%  Similarity=0.135  Sum_probs=117.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------------------------------------------eEEe
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------------------------------------------LVCY  459 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~-------------------------------------------~~~~  459 (704)
                      .|+.+.|+++..-|++|...|.|.||.+...+.                                           ...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            588999999988999999999999986542211                                           0112


Q ss_pred             ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--c------CCCCeeEEEEcC-----C---CCEEEEE
Q 005277          460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--G------HLSDVDCVRWHI-----N---CNYIATG  523 (704)
Q Consensus       460 ~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~--~------~~~~V~~v~~~p-----~---~~~l~tg  523 (704)
                      ....++|++++.| +=-+++.|..+|.+.|.|++....+..-.  .      ....|+++.|..     |   +-.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            2245889999998 55589999999999999998776654421  1      223578888862     2   2578999


Q ss_pred             ECCCcEEEEeCC--C-Cc----EEEEeecCCCCEEEEE-EecC-C-------------------CEEEEEeCCCeEEEEe
Q 005277          524 SSDKTVRLWDVS--S-GE----CVRIFIGHRSMILSLA-MSPD-G-------------------RYMASGDEDGTIMMWD  575 (704)
Q Consensus       524 s~dg~I~iwd~~--~-~~----~~~~~~~h~~~i~~l~-~spd-g-------------------~~l~sg~~dg~I~iwd  575 (704)
                      +..|.+.+|.+.  . +.    .......+.++|..+. ++.+ |                   ..++....+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            999999999875  1 21    1111224556666655 3221 1                   1233344466799999


Q ss_pred             CCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          576 LASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       576 l~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                      ..+.+.........-.+..+.+-.  ...                           ...+..|++-..+|.|+++.+..-
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~--~~~---------------------------~~~~~~Lv~l~~~G~i~i~SLP~L  292 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVP--TIS---------------------------RNGGYCLVCLFNNGSIRIYSLPSL  292 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEE--EE----------------------------EEEEEEEEEEETTSEEEEEETTT-
T ss_pred             CCCCcccceeeccccccceEEEEe--ecc---------------------------cCCceEEEEEECCCcEEEEECCCc
Confidence            887776554442211222222200  000                           123557888889999999999886


Q ss_pred             ccccc
Q 005277          656 TKVLK  660 (704)
Q Consensus       656 ~~~~~  660 (704)
                      +.+..
T Consensus       293 kei~~  297 (395)
T PF08596_consen  293 KEIKS  297 (395)
T ss_dssp             -EEEE
T ss_pred             hHhhc
Confidence            65433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.65  E-value=0.0027  Score=68.97  Aligned_cols=160  Identities=19%  Similarity=0.195  Sum_probs=100.6

Q ss_pred             CCccCeEEEEEcCCCCEEEEE---eCC-CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE-eCCCeE--EEEE
Q 005277          419 GHSGPVYSASFSPLGDFILSS---SAD-TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTA--RIWS  491 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~~l~s~---s~D-g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg-s~dg~i--~lwd  491 (704)
                      .-...+..-.|+|++..++-.   ... ..+.++++.++....... ..+.-..-+|+|+|+.++.+ ..||..  .+.|
T Consensus       190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~d  268 (425)
T COG0823         190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMD  268 (425)
T ss_pred             ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEc
Confidence            344567778899999865532   222 469999999887654443 22333457899999887665 456654  5556


Q ss_pred             CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC-
Q 005277          492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-  567 (704)
Q Consensus       492 ~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~-  567 (704)
                      +......+ +....+.-..=.|+|+|++|+..+. .|  .|.++|...+... .+....+.-..-.|+|||++|+..+. 
T Consensus       269 l~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~~p~~SpdG~~i~~~~~~  346 (425)
T COG0823         269 LDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNSNPVWSPDGDKIVFESSS  346 (425)
T ss_pred             CCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCcCccCCCCCCEEEEEecc
Confidence            66655333 3323233335678999999987764 33  3667777665543 33333333337889999999987664 


Q ss_pred             CCe--EEEEeCCCCee
Q 005277          568 DGT--IMMWDLASGRC  581 (704)
Q Consensus       568 dg~--I~iwdl~~~~~  581 (704)
                      +|.  |.+.|+.++..
T Consensus       347 ~g~~~i~~~~~~~~~~  362 (425)
T COG0823         347 GGQWDIDKNDLASGGK  362 (425)
T ss_pred             CCceeeEEeccCCCCc
Confidence            344  66666665543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.64  E-value=0.007  Score=64.81  Aligned_cols=93  Identities=18%  Similarity=0.272  Sum_probs=62.9

Q ss_pred             cCCCCEEEEE---------eCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277          430 SPLGDFILSS---------SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (704)
Q Consensus       430 sp~~~~l~s~---------s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~  500 (704)
                      |||+++++..         +..+.+.+||+.+++....... ...+....|||+|+.++... ++.|.+++..++...+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            5778877653         2346789999998655443333 56788999999999998885 58899999877754433


Q ss_pred             eccC-----------------CCCeeEEEEcCCCCEEEEEE
Q 005277          501 MAGH-----------------LSDVDCVRWHINCNYIATGS  524 (704)
Q Consensus       501 ~~~~-----------------~~~V~~v~~~p~~~~l~tgs  524 (704)
                      -...                 .+.-..+-|+|++++|+...
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence            2211                 12335788999999998754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.61  E-value=0.036  Score=57.27  Aligned_cols=247  Identities=13%  Similarity=0.091  Sum_probs=141.4

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       356 ~~~fs~dg~~lasg~----------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      .+..|||++.+.++.          ..-.|.+||..+.........               |.+. +.   ...  ....
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i---------------P~k~-R~---~~~--~~~~   98 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI---------------PPKP-RA---QVV--PYKN   98 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE---------------TTS--B-----BS----GG
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec---------------CCcc-hh---eec--cccc
Confidence            366799999888743          345699999887433221111               1100 00   000  1123


Q ss_pred             EEEEcCCCCEEEEE--eCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeEEe-
Q 005277          426 SASFSPLGDFILSS--SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIM-  501 (704)
Q Consensus       426 ~l~~sp~~~~l~s~--s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~-~~~~~~~~-  501 (704)
                      .++++.|+++++..  +--.+|.|.|+...+.+..+.-.  .++.+--+ ...-|.+-|.||.+.-..++ .++..+.. 
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t  175 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKST  175 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEec-CCCceEEEecCCceEEEEECCCCCEeEeec
Confidence            45788999987765  45567999999988887776632  22222222 23458888999999999998 45443222 


Q ss_pred             ---ccCCCCe-eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE--Eeec----------CCCCEEEEEEecCCCEEEEE
Q 005277          502 ---AGHLSDV-DCVRWHINCNYIATGSSDKTVRLWDVSSGECVR--IFIG----------HRSMILSLAMSPDGRYMASG  565 (704)
Q Consensus       502 ---~~~~~~V-~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~--~~~~----------h~~~i~~l~~spdg~~l~sg  565 (704)
                         .....++ ..-.+...+..++.-+.+|.|+--|+.......  .+..          ..+...-+++++..+.|++.
T Consensus       176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL  255 (342)
T PF06433_consen  176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL  255 (342)
T ss_dssp             EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE
T ss_pred             cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE
Confidence               1111222 223344455555557789999998887554221  1110          01223447777765555542


Q ss_pred             e---CC-------CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC
Q 005277          566 D---ED-------GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG  635 (704)
Q Consensus       566 ~---~d-------g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  635 (704)
                      -   .+       ..|.++|+.+++.+.++.. ..++.++..                                  +.+.
T Consensus       256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~V----------------------------------sqd~  300 (342)
T PF06433_consen  256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAV----------------------------------SQDD  300 (342)
T ss_dssp             EEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEE----------------------------------ESSS
T ss_pred             ecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEE----------------------------------ccCC
Confidence            2   11       1588889999999988863 235666666                                  4444


Q ss_pred             C-EEEE-EeCCCcEEEEeCCCCcccccc
Q 005277          636 S-LLAS-GSADCTVKLWDVTTSTKVLKT  661 (704)
Q Consensus       636 ~-~las-gs~Dg~V~iWd~~~~~~~~~~  661 (704)
                      . +|++ ...++.+.|||..+++.+...
T Consensus       301 ~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  301 KPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             S-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             CcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence            3 5554 456899999999999776544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.035  Score=60.01  Aligned_cols=199  Identities=18%  Similarity=0.194  Sum_probs=138.4

Q ss_pred             eEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeE
Q 005277          424 VYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDRIQPLR  499 (704)
Q Consensus       424 V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~---dg~i~lwd~~~~~~~~  499 (704)
                      -.+++.++.+..++ +...++.|.+.|..+.........-. ....++++|++..+.++..   ++++.+.|..+.+.+.
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            34677888887554 44456899999988777766655333 5568999999988777765   6889999988888777


Q ss_pred             EeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEE-E---eecCCCCEEEEEEecCCCEEEEEeCC---CeE
Q 005277          500 IMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVR-I---FIGHRSMILSLAMSPDGRYMASGDED---GTI  571 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~-~---~~~h~~~i~~l~~spdg~~l~sg~~d---g~I  571 (704)
                      .......+ ..+++.|+|+.+++.. .++.|.+.|..+....+ .   ...-......+.++|+|.++.+....   +.+
T Consensus       155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v  233 (381)
T COG3391         155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV  233 (381)
T ss_pred             EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence            75544344 8899999999776665 78999999977665553 1   01122334678999999977665443   589


Q ss_pred             EEEeCCCCeeeeeecCCCc-eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCcEEE
Q 005277          572 MMWDLASGRCVTPLMGHTS-CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCTVKL  649 (704)
Q Consensus       572 ~iwdl~~~~~~~~~~~h~~-~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~V~i  649 (704)
                      ...|..++.....-..-.. ....+..                                  +|+|..+.+.. ..+.|.+
T Consensus       234 ~~id~~~~~v~~~~~~~~~~~~~~v~~----------------------------------~p~g~~~yv~~~~~~~V~v  279 (381)
T COG3391         234 LKIDTATGNVTATDLPVGSGAPRGVAV----------------------------------DPAGKAAYVANSQGGTVSV  279 (381)
T ss_pred             EEEeCCCceEEEeccccccCCCCceeE----------------------------------CCCCCEEEEEecCCCeEEE
Confidence            9999888876654211111 2223333                                  88999887774 4488999


Q ss_pred             EeCCCCccc
Q 005277          650 WDVTTSTKV  658 (704)
Q Consensus       650 Wd~~~~~~~  658 (704)
                      -|..+....
T Consensus       280 id~~~~~v~  288 (381)
T COG3391         280 IDGATDRVV  288 (381)
T ss_pred             EeCCCCcee
Confidence            888876544

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.57  E-value=0.03  Score=60.54  Aligned_cols=204  Identities=16%  Similarity=0.181  Sum_probs=142.4

Q ss_pred             EEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277          354 LNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (704)
Q Consensus       354 V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (704)
                      -.+++.++++. ..++...+..|.+.|......                           ......+.  ....++++|+
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~---------------------------~~~~~vG~--~P~~~~~~~~  126 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV---------------------------LGSIPVGL--GPVGLAVDPD  126 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccce---------------------------eeEeeecc--CCceEEECCC
Confidence            35677888877 555555678899998543111                           11111122  4568999999


Q ss_pred             CCEEEEEeC---CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeE-E---eccC
Q 005277          433 GDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLR-I---MAGH  504 (704)
Q Consensus       433 ~~~l~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~~~~~~~~-~---~~~~  504 (704)
                      ++.+..+..   ++++.+.|..+.+.+.....-..+ ..+++.|+|..++.+. .++++.+.|.......+ .   ...-
T Consensus       127 ~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~  205 (381)
T COG3391         127 GKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV  205 (381)
T ss_pred             CCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc
Confidence            987776654   789999999988888775544455 8999999999766665 78999999977655443 1   0112


Q ss_pred             CCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCcEEEE-ee-cCCCCEEEEEEecCCCEEEEEeC-CCeEEEEeCCC
Q 005277          505 LSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRI-FI-GHRSMILSLAMSPDGRYMASGDE-DGTIMMWDLAS  578 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~-~~-~h~~~i~~l~~spdg~~l~sg~~-dg~I~iwdl~~  578 (704)
                      ...-..+.+.|+++++.+....   +.+...|..++..... .. +.. ....+.++|+|.++.+... .+.+.+-|..+
T Consensus       206 ~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         206 GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence            2334568899999977665543   5899999998877665 22 222 5667899999999888744 48899999988


Q ss_pred             CeeeeeecCC
Q 005277          579 GRCVTPLMGH  588 (704)
Q Consensus       579 ~~~~~~~~~h  588 (704)
                      ......+...
T Consensus       285 ~~v~~~~~~~  294 (381)
T COG3391         285 DRVVKTGPTG  294 (381)
T ss_pred             Cceeeeeccc
Confidence            8777765443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.55  E-value=0.047  Score=53.31  Aligned_cols=143  Identities=8%  Similarity=-0.015  Sum_probs=96.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEE
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~  512 (704)
                      ..+++.||..+.+..-|..+|+....-.- ...|-+-+.- -|.+++.|+..|.+++.+..++.....+..-..--....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence            35677888888888888888877654321 1122221111 477899999999999999999988877764322222334


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~  577 (704)
                      ..+++..+..|+.|++.+..|.++..++...+-..+.-.+-+..|-...|+.+...|.+.--...
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence            56889999999999999999999999998765444444445566633344455555555444433

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.49  E-value=0.064  Score=55.10  Aligned_cols=148  Identities=15%  Similarity=0.143  Sum_probs=92.1

Q ss_pred             CCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEe
Q 005277          361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS  440 (704)
Q Consensus       361 ~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s  440 (704)
                      ..++.|+.|+.+| +.++++....                           .....  .+..+|..+...|+-+.|++-+
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~---------------------------~~~~i--~~~~~I~ql~vl~~~~~llvLs   54 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPS---------------------------KPTRI--LKLSSITQLSVLPELNLLLVLS   54 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCc---------------------------cceeE--eecceEEEEEEecccCEEEEEc
Confidence            3578899999999 8888872210                           01111  1223499999999888777665


Q ss_pred             CCCeEEEEeCCCCceeEEe--------------ecCCcCeeEEE--EcCCCCEEEEEeCCCeEEEEECCCC-----ceeE
Q 005277          441 ADTTIRLWSTKLNANLVCY--------------KGHNYPVWDVQ--FNPQGHYFASSSHDRTARIWSMDRI-----QPLR  499 (704)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~--------------~~h~~~V~~v~--~sp~~~~l~sgs~dg~i~lwd~~~~-----~~~~  499 (704)
                       |+.+.++++.........              ......+..++  -...+...+.....+.|.+|.....     ...+
T Consensus        55 -d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~k  133 (275)
T PF00780_consen   55 -DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLK  133 (275)
T ss_pred             -CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeE
Confidence             499999998765443311              11223344444  1123334444445568999887653     3444


Q ss_pred             EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe
Q 005277          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF  543 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~  543 (704)
                      .+. -...+.+++|.  ++.++.|..+ ...+.|+.++.....+
T Consensus       134 e~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  134 EIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELL  173 (275)
T ss_pred             EEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEe
Confidence            444 34778899998  5678888754 4889999987765544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.43  E-value=0.0076  Score=65.78  Aligned_cols=215  Identities=15%  Similarity=0.169  Sum_probs=104.3

Q ss_pred             eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccc--ccCCCCCccceeeccCCc----
Q 005277          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED--IIGPNGRKRSYTLYQGHS----  421 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~h~----  421 (704)
                      ....-....+.++|+|++++++ .||.-.|+................  .......  ...........+.+....    
T Consensus        29 g~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~G~g~~~--vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i  105 (443)
T PF04053_consen   29 GSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAFGSGLSF--VWSSRNRYAVLESSSTIKIYKNFKNEVVKSI  105 (443)
T ss_dssp             EE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEEEE-SEE--EE-TSSEEEEE-TTS-EEEEETTEE-TT---
T ss_pred             CCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccccCceeEE--EEecCccEEEEECCCeEEEEEcCccccceEE
Confidence            3344457889999999999995 577777777432221111111000  0000000  000001111111111111    


Q ss_pred             ---cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Q 005277          422 ---GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI---  495 (704)
Q Consensus       422 ---~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~---  495 (704)
                         ..+..|-.   |..|+..+.+ .|.+||+.+++.+..+...  +|..+.|+++|.+++..+.+ ++.+++.+..   
T Consensus       106 ~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~  178 (443)
T PF04053_consen  106 KLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVA  178 (443)
T ss_dssp             --SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHH
T ss_pred             cCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcc
Confidence               12222222   7777766654 8999999999999888743  48999999999999998754 6777765432   


Q ss_pred             --------ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          496 --------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       496 --------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                              .....+..-...|.+.+|..+  .++..+.. .++.  +..|..- ++..-..++.=+.+.|..+.++....
T Consensus       179 ~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~ld~~~yllgy~~~~~~ly~~Dr  252 (443)
T PF04053_consen  179 AIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAHLDKPLYLLGYLPKENRLYLIDR  252 (443)
T ss_dssp             HBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE-SS--EEEEEETTTTEEEEE-T
T ss_pred             cccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEEcCCceEEEEEEccCCEEEEEEC
Confidence                    023333322567888888765  44444434 5555  3344432 22222456667777777778888888


Q ss_pred             CCeEEEEeCCC
Q 005277          568 DGTIMMWDLAS  578 (704)
Q Consensus       568 dg~I~iwdl~~  578 (704)
                      |+.|..+.+..
T Consensus       253 ~~~v~~~~ld~  263 (443)
T PF04053_consen  253 DGNVISYELDL  263 (443)
T ss_dssp             T--EEEEE--H
T ss_pred             CCCEEEEEECH
Confidence            88888887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.00078  Score=72.92  Aligned_cols=94  Identities=15%  Similarity=0.167  Sum_probs=81.8

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCee-EEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW-DVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~-~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      ...|.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++.-|..+++ +++|.|||+.+|+|-.||+|++.|++++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4568899999999999999999999999998 889999987888888 99999999999999999999999999988776


Q ss_pred             Eec-cCCCCeeEEEEcC
Q 005277          500 IMA-GHLSDVDCVRWHI  515 (704)
Q Consensus       500 ~~~-~~~~~V~~v~~~p  515 (704)
                      .+. .-..+|.++-|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            632 2446788888863

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.33  E-value=0.024  Score=63.42  Aligned_cols=202  Identities=12%  Similarity=0.094  Sum_probs=121.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCCc------Cee--EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNY------PVW--DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~------~V~--~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      +..++.++.++.+...|..+++.+..+.....      .+.  .+... ++..++.++.++.|..+|.++++.+..+...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            45577778889999999999988877654322      110  11111 2267888889999999999999988776643


Q ss_pred             CCC-----ee-EEEEcCCCCEEEEEE---------CCCcEEEEeCCCCcEEEEeecCCCC--------------------
Q 005277          505 LSD-----VD-CVRWHINCNYIATGS---------SDKTVRLWDVSSGECVRIFIGHRSM--------------------  549 (704)
Q Consensus       505 ~~~-----V~-~v~~~p~~~~l~tgs---------~dg~I~iwd~~~~~~~~~~~~h~~~--------------------  549 (704)
                      ...     +. ...+.  +..++.++         .+|.+..+|..+|+.+..+......                    
T Consensus       140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            221     11 11221  24555554         3678999999999988876532110                    


Q ss_pred             E-EEEEEecCCCEEEEEeCCC------------------eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcccccccc
Q 005277          550 I-LSLAMSPDGRYMASGDEDG------------------TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKI  610 (704)
Q Consensus       550 i-~~l~~spdg~~l~sg~~dg------------------~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~  610 (704)
                      + .+.++.+.+..++.++.++                  .|.-+|+.+|+.+-.++.-....+.+......         
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p---------  288 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQP---------  288 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCC---------
Confidence            0 1344555567788887665                  68888999988876653211111111000000         


Q ss_pred             ccccccceeeeeeeEEeecccCCCCC---EEEEEeCCCcEEEEeCCCCcccccc
Q 005277          611 SDKVSTGFLFYSLTIIYFGCASCEGS---LLASGSADCTVKLWDVTTSTKVLKT  661 (704)
Q Consensus       611 ~~~~~~~~~~~~~~~~~~~~~s~~g~---~lasgs~Dg~V~iWd~~~~~~~~~~  661 (704)
                                    .+. ....-++.   .++.++.+|.+...|..+++.+...
T Consensus       289 --------------~~~-~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~  327 (488)
T cd00216         289 --------------SLA-DIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR  327 (488)
T ss_pred             --------------eEE-eccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence                          000 00011232   6778888999999999998877654

The alignment model contains an 8-bladed beta-propeller.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.30  E-value=0.052  Score=57.25  Aligned_cols=185  Identities=14%  Similarity=0.181  Sum_probs=108.6

Q ss_pred             CCEEEEEeC---------C-CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277          363 GSLVAGGFS---------D-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (704)
Q Consensus       363 g~~lasg~~---------d-g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (704)
                      ..+|++|+.         . |.|.++++...+.                      ....-....-....++|++++-.  
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~----------------------~~~~l~~i~~~~~~g~V~ai~~~--   97 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPE----------------------NNFKLKLIHSTEVKGPVTAICSF--   97 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------------------------EEEEEEEEEESS-EEEEEEE--
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccc----------------------cceEEEEEEEEeecCcceEhhhh--
Confidence            578888864         2 8899999876200                      00001111122346889999877  


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecC--CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEecc--CCCC
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAG--HLSD  507 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-~~~~~~~~~--~~~~  507 (704)
                      +.+|+.+. .+.|.+|++...+.+.....+  ...+.++..  .++++++|...+.+.++..+. ...+..+..  ....
T Consensus        98 ~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~  174 (321)
T PF03178_consen   98 NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW  174 (321)
T ss_dssp             TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE
T ss_pred             CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc
Confidence            34455554 468999999877723222222  335555555  467999999888898886543 222333332  3345


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCC-------Cc--EEEEee-cCCCCEEEE---EEec--CCC------EEEEEe
Q 005277          508 VDCVRWHINCNYIATGSSDKTVRLWDVSS-------GE--CVRIFI-GHRSMILSL---AMSP--DGR------YMASGD  566 (704)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-------~~--~~~~~~-~h~~~i~~l---~~sp--dg~------~l~sg~  566 (704)
                      +.++.|-++++.++++..+|.+.++....       +.  ...... .....|+++   ++.|  .+.      .++.++
T Consensus       175 v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T  254 (321)
T PF03178_consen  175 VTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGT  254 (321)
T ss_dssp             EEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEE
T ss_pred             EEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEe
Confidence            78888886778999999999999998752       22  222222 233567777   5455  222      477888


Q ss_pred             CCCeEEEE
Q 005277          567 EDGTIMMW  574 (704)
Q Consensus       567 ~dg~I~iw  574 (704)
                      .+|.|.+.
T Consensus       255 ~~G~Ig~l  262 (321)
T PF03178_consen  255 VDGSIGVL  262 (321)
T ss_dssp             TTS-EEEE
T ss_pred             cCCEEEEE
Confidence            89988844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.29  E-value=0.13  Score=56.23  Aligned_cols=157  Identities=18%  Similarity=0.147  Sum_probs=91.9

Q ss_pred             CeEEEEEcCCCCEEEEE-eCCC----eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC-----------Ce
Q 005277          423 PVYSASFSPLGDFILSS-SADT----TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-----------RT  486 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~-s~Dg----~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d-----------g~  486 (704)
                      .+...+++|++++++-+ +..|    +++++|+.+++.+...-... ....+.|.++++.|+....+           ..
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34567899999988743 4434    49999999997665321111 12239999998887766533           34


Q ss_pred             EEEEECCCCce--eEEeccCCCC--eeEEEEcCCCCEEEEEECC----CcEEEEeCCCC----cEEEEeecCCCCEEEEE
Q 005277          487 ARIWSMDRIQP--LRIMAGHLSD--VDCVRWHINCNYIATGSSD----KTVRLWDVSSG----ECVRIFIGHRSMILSLA  554 (704)
Q Consensus       487 i~lwd~~~~~~--~~~~~~~~~~--V~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~----~~~~~~~~h~~~i~~l~  554 (704)
                      |+.|.+.+...  ...+......  ...+..++++++|+..+..    ..+++.|+..+    .....+......+....
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            78888877643  3555544433  5678889999998865432    34788888775    22333333333443333


Q ss_pred             EecCCCEEEEE---eCCCeEEEEeCCCCe
Q 005277          555 MSPDGRYMASG---DEDGTIMMWDLASGR  580 (704)
Q Consensus       555 ~spdg~~l~sg---~~dg~I~iwdl~~~~  580 (704)
                      -+..+.+++..   ...+.|.-.++....
T Consensus       284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  284 DHHGDRLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             EEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             EccCCEEEEeeCCCCCCcEEEEecccccc
Confidence            33344444433   234567777776654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.25  E-value=0.0065  Score=69.92  Aligned_cols=142  Identities=15%  Similarity=0.176  Sum_probs=99.0

Q ss_pred             CCEEEEE-eCCCeEEEEeCCCCceeEEeecCCcC-eeEEEEcC-----CCCEEEEEeCCCeEEEEECCCCc-eeEEec--
Q 005277          433 GDFILSS-SADTTIRLWSTKLNANLVCYKGHNYP-VWDVQFNP-----QGHYFASSSHDRTARIWSMDRIQ-PLRIMA--  502 (704)
Q Consensus       433 ~~~l~s~-s~Dg~I~lwd~~~~~~~~~~~~h~~~-V~~v~~sp-----~~~~l~sgs~dg~i~lwd~~~~~-~~~~~~--  502 (704)
                      ..+|+.. .....|+-.|++.|+.+..++.|... |.+++-..     ....-+.|-.++.+..||.+-.. .+..-.  
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3444433 45577999999999999999877643 55443221     13345677788999999998532 221111  


Q ss_pred             --cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          503 --GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       503 --~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                        .......|++-..+| +||+|+.+|.||+||--..+....+.+-..+|.+|..+.||+||++.+. ..+.+++.
T Consensus       573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence              234567788766665 8999999999999995333334455677889999999999999987664 56777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.24  E-value=0.061  Score=56.74  Aligned_cols=140  Identities=16%  Similarity=0.175  Sum_probs=89.5

Q ss_pred             CCEEEEEeC----------CCeEEEEeCCCC----ceeEEe--ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 005277          433 GDFILSSSA----------DTTIRLWSTKLN----ANLVCY--KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (704)
Q Consensus       433 ~~~l~s~s~----------Dg~I~lwd~~~~----~~~~~~--~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~  496 (704)
                      ..+++.|+.          .|.|.++++...    ..+...  ....++|++++-- ++. ++++. ++.+.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence            457776643          289999999874    222222  2357889988876 444 44443 4899999998877


Q ss_pred             eeEEeccCC--CCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEEee--cCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277          497 PLRIMAGHL--SDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFI--GHRSMILSLAMSPDGRYMASGDEDGTI  571 (704)
Q Consensus       497 ~~~~~~~~~--~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~~dg~I  571 (704)
                      .+.....+.  ..+.++..  .+++|++|.....+.++..+. +..+..+.  .....++++.|-++++.++++..+|.+
T Consensus       119 ~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl  196 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL  196 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred             cchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence            232222222  34555554  467999999999998885543 33233332  234468899998777899999999999


Q ss_pred             EEEeCC
Q 005277          572 MMWDLA  577 (704)
Q Consensus       572 ~iwdl~  577 (704)
                      .++...
T Consensus       197 ~~l~~~  202 (321)
T PF03178_consen  197 FVLRYN  202 (321)
T ss_dssp             EEEEE-
T ss_pred             EEEEEC
Confidence            999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.0014  Score=71.07  Aligned_cols=93  Identities=20%  Similarity=0.283  Sum_probs=78.4

Q ss_pred             CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCee-EEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 005277          463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD-CVRWHINCNYIATGSSDKTVRLWDVSSGECVR  541 (704)
Q Consensus       463 ~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~-~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~  541 (704)
                      ...|.-+.|+|.-..+|++..+|.+.+..+. .+.+..+.-+...++ +++|.|+|+.||+|-.||+|++.|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3457789999999999999999999999988 777888876777777 99999999999999999999999999988776


Q ss_pred             Eee-cCCCCEEEEEEe
Q 005277          542 IFI-GHRSMILSLAMS  556 (704)
Q Consensus       542 ~~~-~h~~~i~~l~~s  556 (704)
                      .+. .-...|+++-|+
T Consensus        99 ~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWD  114 (665)
T ss_pred             ccccccccchheeecc
Confidence            632 234567777786

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.23  E-value=0.11  Score=53.81  Aligned_cols=146  Identities=15%  Similarity=0.132  Sum_probs=89.3

Q ss_pred             EEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc--
Q 005277          427 ASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG--  503 (704)
Q Consensus       427 l~~sp~~~~l-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~--  503 (704)
                      -.|.++...| .+--..+.|.-|+..++.... +. +...+.++..-..+..++++.  ..+.+++.+++..+..+..  
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence            3577777744 466677889999988654332 22 222334444443444455543  3466677765555333321  


Q ss_pred             ---CCCCeeEEEEcCCCCEEEEEEC-----------CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC-
Q 005277          504 ---HLSDVDCVRWHINCNYIATGSS-----------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-  568 (704)
Q Consensus       504 ---~~~~V~~v~~~p~~~~l~tgs~-----------dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d-  568 (704)
                         .....+.+...|+|.+.++...           -|.|+.+|. .+..++....+-..-+.|+||||++.|+.+... 
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~  184 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA  184 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence               1234566788899887766433           133444443 577777776666667889999999888777654 


Q ss_pred             CeEEEEeCC
Q 005277          569 GTIMMWDLA  577 (704)
Q Consensus       569 g~I~iwdl~  577 (704)
                      +.|.-|++.
T Consensus       185 ~~i~r~~~d  193 (307)
T COG3386         185 NRIHRYDLD  193 (307)
T ss_pred             CeEEEEecC
Confidence            778888775

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.21  E-value=0.037  Score=62.87  Aligned_cols=126  Identities=13%  Similarity=0.154  Sum_probs=73.4

Q ss_pred             CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe------CCCeEEEEECC-CCceeEEeccCCCCeeEEEEc
Q 005277          442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS------HDRTARIWSMD-RIQPLRIMAGHLSDVDCVRWH  514 (704)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs------~dg~i~lwd~~-~~~~~~~~~~~~~~V~~v~~~  514 (704)
                      +|.+.-.+-..-..+.-..+....+.+.+++|+|..++...      .|..-.||-.. .+.......+.  ....-.|+
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWs  405 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWS  405 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceEC
Confidence            56665443222122222223334678899999999887665      24444555432 22232223332  37888999


Q ss_pred             CCCCEEEEEECC------------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 005277          515 INCNYIATGSSD------------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM  573 (704)
Q Consensus       515 p~~~~l~tgs~d------------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~i  573 (704)
                      |+|..|++.+..            +.+.+.++..+....   ...+.|..+.|||||..++... +|.|.+
T Consensus       406 pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        406 LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            999888877533            223333443333222   2346799999999999888765 477776

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.12  E-value=0.036  Score=62.90  Aligned_cols=146  Identities=13%  Similarity=0.107  Sum_probs=87.9

Q ss_pred             cCeEEEEEcCCCCEEEEEe------CCC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC---------
Q 005277          422 GPVYSASFSPLGDFILSSS------ADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD---------  484 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s------~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d---------  484 (704)
                      ..+.+.+++|+|+.++...      .|.  .|.+++.. +.......+.  ..+.-.|+|+|..+++.+..         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence            3577889999999877544      244  44444542 2222222322  37788999998888777532         


Q ss_pred             ---CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEE---EeCCCCcEEEE-----e-ecCCCCEEE
Q 005277          485 ---RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL---WDVSSGECVRI-----F-IGHRSMILS  552 (704)
Q Consensus       485 ---g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~i---wd~~~~~~~~~-----~-~~h~~~i~~  552 (704)
                         +.+.+.+++.+....   .....|..+.|+|||..++... +|.|++   -....|. .+.     + .+-...+.+
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCcccc
Confidence               223333443333222   2345799999999999998876 577777   4434453 221     2 223334688


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeC
Q 005277          553 LAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       553 l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                      +.|.+++.++ ++..++...+|.+
T Consensus       502 l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        502 LDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             ceEecCCEEE-EEecCCCCceEEE
Confidence            9999998854 5555554555544

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.12  E-value=0.16  Score=55.46  Aligned_cols=172  Identities=13%  Similarity=0.059  Sum_probs=91.5

Q ss_pred             eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-------ccCCCCeeEEEEcCC
Q 005277          444 TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-------AGHLSDVDCVRWHIN  516 (704)
Q Consensus       444 ~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~-------~~~~~~V~~v~~~p~  516 (704)
                      .|++|+.. |+.+..+.-..+.|.++.|..+.. +++-..||.++++|+.... ...+       .-....+.+..+..+
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence            58999887 666665543337899999997654 5566689999999986433 1111       111111222233335


Q ss_pred             CCEEEEEECCCcEEEEeCCCCc-EEEEee---c-------CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277          517 CNYIATGSSDKTVRLWDVSSGE-CVRIFI---G-------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       517 ~~~l~tgs~dg~I~iwd~~~~~-~~~~~~---~-------h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                      |-.+.+  .++.+.+..--... ..+.+.   +       +........++.+....+....++.+.+.+-...+.   +
T Consensus       139 GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i  213 (410)
T PF04841_consen  139 GIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I  213 (410)
T ss_pred             CEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence            533333  34444444322211 111110   0       000000023344444444445555555444322211   1


Q ss_pred             cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277          586 MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       586 ~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~  658 (704)
                      . ..+++..++.                                  ||+|+++|.-..+|.+.|....-.+..
T Consensus       214 ~-~~~~i~~iav----------------------------------Spng~~iAl~t~~g~l~v~ssDf~~~~  251 (410)
T PF04841_consen  214 D-SDGPIIKIAV----------------------------------SPNGKFIALFTDSGNLWVVSSDFSEKL  251 (410)
T ss_pred             c-CCCCeEEEEE----------------------------------CCCCCEEEEEECCCCEEEEECccccee
Confidence            1 2356777777                                  999999999999999999886655443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>smart00320 WD40 WD40 repeats

Probab=97.11  E-value=0.0015  Score=43.35  Aligned_cols=39  Identities=49%  Similarity=0.969  Sum_probs=34.6

Q ss_pred             CcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277          537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (704)
Q Consensus       537 ~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwd  575 (704)
                      +++...+..|...|.++.|++++.++++++.||.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355667778899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.06  E-value=0.36  Score=52.07  Aligned_cols=44  Identities=30%  Similarity=0.404  Sum_probs=38.6

Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCc
Q 005277          547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS  590 (704)
Q Consensus       547 ~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~  590 (704)
                      ...+.+++.+|++++.++...=|.|.++|+.++..++.++|..+
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd  350 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD  350 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence            34578899999999999988889999999999999999888764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.04  E-value=0.18  Score=52.22  Aligned_cols=153  Identities=13%  Similarity=0.125  Sum_probs=94.1

Q ss_pred             CEEEEEeCCCeEEEEeCCC-CceeEE----eecCCcCee-EEEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEec---
Q 005277          434 DFILSSSADTTIRLWSTKL-NANLVC----YKGHNYPVW-DVQFNPQGHYFASSSHDRTARIWSMDRIQPL--RIMA---  502 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~~-~~~~~~----~~~h~~~V~-~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~--~~~~---  502 (704)
                      +.+.+-|.||++.-..++. |+....    |..-..++. .-++...+..++--+.+|.|+--|+......  ..+.   
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t  227 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT  227 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence            4577888899999888874 443322    111122222 2234444545555678899988888765432  1111   


Q ss_pred             -------cCCCCeeEEEEcCCCCEEEEEEC---CC-------cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCC-EEEE
Q 005277          503 -------GHLSDVDCVRWHINCNYIATGSS---DK-------TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMAS  564 (704)
Q Consensus       503 -------~~~~~V~~v~~~p~~~~l~tgs~---dg-------~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~s  564 (704)
                             ...+.-.-+++|+..+.|++.-.   +|       .|.++|+.+++.+..+.. ..++.+|+.+.+.+ +|++
T Consensus       228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~  306 (342)
T PF06433_consen  228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYA  306 (342)
T ss_dssp             HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEE
T ss_pred             ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEE
Confidence                   01123455788887766666321   22       388899999999988863 34677999999776 5654


Q ss_pred             E-eCCCeEEEEeCCCCeeeeeecC
Q 005277          565 G-DEDGTIMMWDLASGRCVTPLMG  587 (704)
Q Consensus       565 g-~~dg~I~iwdl~~~~~~~~~~~  587 (704)
                      . ..++.+.+||..+|+.+.++..
T Consensus       307 ~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  307 LSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EETTTTEEEEEETTT--EEEEE--
T ss_pred             EcCCCCeEEEEeCcCCcEEeehhc
Confidence            4 4689999999999999988864

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.04  E-value=0.047  Score=62.00  Aligned_cols=217  Identities=15%  Similarity=0.180  Sum_probs=113.1

Q ss_pred             CCEEEEEeCC------CeEEEEeCCCCceeEEeec-CCcCeeEEEEcCCCCEEEEEeCC------CeEEEEECCCCceeE
Q 005277          433 GDFILSSSAD------TTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRIQPLR  499 (704)
Q Consensus       433 ~~~l~s~s~D------g~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~l~sgs~d------g~i~lwd~~~~~~~~  499 (704)
                      +..++.|+.+      ..+..+|..++.-...... +...-.+++.. ++..+++||.|      .++-.||.++.+-..
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            3445555555      3577888776633222111 22223334443 56788899988      356677777655322


Q ss_pred             E--eccCCCCeeEEEEcCCCCEEEEEECCCc-----EEEEeCCCCcEEEEeecCCCCEEEEE-EecCCCEEEEEeCCC--
Q 005277          500 I--MAGHLSDVDCVRWHINCNYIATGSSDKT-----VRLWDVSSGECVRIFIGHRSMILSLA-MSPDGRYMASGDEDG--  569 (704)
Q Consensus       500 ~--~~~~~~~V~~v~~~p~~~~l~tgs~dg~-----I~iwd~~~~~~~~~~~~h~~~i~~l~-~spdg~~l~sg~~dg--  569 (704)
                      .  +...........  -+|.+.++|+.||.     |-.||..+.+--..- .......+.+ ..-+|+..++||.++  
T Consensus       364 ~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~gv~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGHGVAVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             cCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence            1  111111111122  26778889998864     777887765432211 1111222222 222788888888654  


Q ss_pred             ----eEEEEeCCCCee--eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277          570 ----TIMMWDLASGRC--VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA  643 (704)
Q Consensus       570 ----~I~iwdl~~~~~--~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~  643 (704)
                          .+..||..+...  +..+..-.......                                    .-++.+.+.||.
T Consensus       441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a------------------------------------~~~~~iYvvGG~  484 (571)
T KOG4441|consen  441 NCLNSVECYDPETNTWTLIAPMNTRRSGFGVA------------------------------------VLNGKIYVVGGF  484 (571)
T ss_pred             cccceEEEEcCCCCceeecCCcccccccceEE------------------------------------EECCEEEEECCc
Confidence                466777766532  22222111111111                                    346778888888


Q ss_pred             CCc-----EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCCC
Q 005277          644 DCT-----VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS  704 (704)
Q Consensus       644 Dg~-----V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt~  704 (704)
                      ||.     |..||..+.+             +..+..+....+.+..+.  -++.+.|+|++||++
T Consensus       485 ~~~~~~~~VE~ydp~~~~-------------W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~  535 (571)
T KOG4441|consen  485 DGTSALSSVERYDPETNQ-------------WTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNN  535 (571)
T ss_pred             cCCCccceEEEEcCCCCc-------------eeEcccCccccccccEEE--ECCEEEEEecccCcc
Confidence            773     5666665532             333433433333333222  367888999998863

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.01  E-value=0.89  Score=52.64  Aligned_cols=273  Identities=17%  Similarity=0.188  Sum_probs=143.4

Q ss_pred             CCCEEEEEEcCC------CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc--CCcc
Q 005277          351 HNGLNCASISQD------GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ--GHSG  422 (704)
Q Consensus       351 ~~~V~~~~fs~d------g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~  422 (704)
                      ...|.|+.++|-      .+++|+|..+..+.+.-........                         ....+.  .-..
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~-------------------------~~~~l~~~~iPR  584 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILI-------------------------THEQLSGEIIPR  584 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCccee-------------------------eeeccCCCccch
Confidence            456999999973      2389999887776655443211100                         000011  1123


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeEEe--ecCCcCeeEEEEcCCCC----------------------
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKL--NANLVCY--KGHNYPVWDVQFNPQGH----------------------  476 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~--~~~~~~~--~~h~~~V~~v~~sp~~~----------------------  476 (704)
                      .|.-..|-.|..+|+++..||.+.-+.++.  +..-..-  .-...|+.--.|+..+.                      
T Consensus       585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~  664 (1096)
T KOG1897|consen  585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY  664 (1096)
T ss_pred             heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence            455566666688999999999988775543  2211000  00122222222222111                      


Q ss_pred             ---------------------EEEEEeCCCeEEEEECCCCce--eEEeccCCCCeeEEEEcCCCCEEEEEECC-------
Q 005277          477 ---------------------YFASSSHDRTARIWSMDRIQP--LRIMAGHLSDVDCVRWHINCNYIATGSSD-------  526 (704)
Q Consensus       477 ---------------------~l~sgs~dg~i~lwd~~~~~~--~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-------  526 (704)
                                           .++++ ..+.+++..++..+.  +++.. -......+++++....+++.+..       
T Consensus       665 spls~kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~  742 (1096)
T KOG1897|consen  665 SPLSLKEVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEY  742 (1096)
T ss_pred             eccchHHhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhh
Confidence                                 12222 234455554443322  22222 22445667777755555544321       


Q ss_pred             -------CcEEEEeCCCCcEEEEeec-CC---CCEEEEEEecC-CCEEEEEe----------CCCeEEEEeCCCCeeeee
Q 005277          527 -------KTVRLWDVSSGECVRIFIG-HR---SMILSLAMSPD-GRYMASGD----------EDGTIMMWDLASGRCVTP  584 (704)
Q Consensus       527 -------g~I~iwd~~~~~~~~~~~~-h~---~~i~~l~~spd-g~~l~sg~----------~dg~I~iwdl~~~~~~~~  584 (704)
                             ..++++|-.+.+.+....- ..   -.|.++.|..| +.++++|.          ..|.|.++....++.+..
T Consensus       743 ~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~  822 (1096)
T KOG1897|consen  743 YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL  822 (1096)
T ss_pred             cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee
Confidence                   1356666555544332211 01   13555568777 67777775          247788887766444433


Q ss_pred             ecCC--CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccc
Q 005277          585 LMGH--TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE  662 (704)
Q Consensus       585 ~~~h--~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~  662 (704)
                      ...+  .+.+.++.                                   --+|+++|.-+  ..|++|+..+.+.     
T Consensus       823 v~e~~v~Gav~aL~-----------------------------------~fngkllA~In--~~vrLye~t~~~e-----  860 (1096)
T KOG1897|consen  823 VAETVVKGAVYALV-----------------------------------EFNGKLLAGIN--QSVRLYEWTTERE-----  860 (1096)
T ss_pred             eeeeeeccceeehh-----------------------------------hhCCeEEEecC--cEEEEEEccccce-----
Confidence            3222  24444443                                   23677776654  5899999988643     


Q ss_pred             cccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       663 ~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                                +..-..+..++..+...-.|..+++|...+
T Consensus       861 ----------Lr~e~~~~~~~~aL~l~v~gdeI~VgDlm~  890 (1096)
T KOG1897|consen  861 ----------LRIECNISNPIIALDLQVKGDEIAVGDLMR  890 (1096)
T ss_pred             ----------ehhhhcccCCeEEEEEEecCcEEEEeeccc
Confidence                      223334566777777777777777776543

>PHA02713 hypothetical protein; Provisional

Probab=96.98  E-value=0.049  Score=61.92  Aligned_cols=184  Identities=10%  Similarity=0.048  Sum_probs=92.1

Q ss_pred             CCCEEEEEeCC------CeEEEEeCCCCcee--EEeecCCcCeeEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcee
Q 005277          432 LGDFILSSSAD------TTIRLWSTKLNANL--VCYKGHNYPVWDVQFNPQGHYFASSSHDR-----TARIWSMDRIQPL  498 (704)
Q Consensus       432 ~~~~l~s~s~D------g~I~lwd~~~~~~~--~~~~~h~~~V~~v~~sp~~~~l~sgs~dg-----~i~lwd~~~~~~~  498 (704)
                      ++...+.|+.+      .++..||..+..-.  ..+.........+.+  +|+..+.||.++     ++..||..+.+-.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            45555666643      34677887665321  111111111112222  678888888654     4778888765322


Q ss_pred             E--EeccCCCCeeEEEEcCCCCEEEEEECCC-----------------------cEEEEeCCCCcEEEEeecCCCCEEEE
Q 005277          499 R--IMAGHLSDVDCVRWHINCNYIATGSSDK-----------------------TVRLWDVSSGECVRIFIGHRSMILSL  553 (704)
Q Consensus       499 ~--~~~~~~~~V~~v~~~p~~~~l~tgs~dg-----------------------~I~iwd~~~~~~~~~~~~h~~~i~~l  553 (704)
                      .  .+.........+.  -++.+.+.|+.++                       .+..||..+.+-...-.-.......-
T Consensus       381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~  458 (557)
T PHA02713        381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG  458 (557)
T ss_pred             ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence            2  1111111112222  2577777777542                       47778877664322111111111111


Q ss_pred             EEecCCCEEEEEeCCC------eEEEEeCCC-C--eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeee
Q 005277          554 AMSPDGRYMASGDEDG------TIMMWDLAS-G--RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT  624 (704)
Q Consensus       554 ~~spdg~~l~sg~~dg------~I~iwdl~~-~--~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (704)
                      +..-+|+..+.||.++      .+..||..+ .  ..+..+..........                             
T Consensus       459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~-----------------------------  509 (557)
T PHA02713        459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI-----------------------------  509 (557)
T ss_pred             EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE-----------------------------
Confidence            2223677777776542      356788765 3  2333332222211111                             


Q ss_pred             EEeecccCCCCCEEEEEeCCC--cEEEEeCCCC
Q 005277          625 IIYFGCASCEGSLLASGSADC--TVKLWDVTTS  655 (704)
Q Consensus       625 ~~~~~~~s~~g~~lasgs~Dg--~V~iWd~~~~  655 (704)
                             .-+|.+.++||.||  ++..||..+.
T Consensus       510 -------~~~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        510 -------LHDNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             -------EECCEEEEEeeecceeehhhcCcccc
Confidence                   34678889999888  6777777664

>PHA02713 hypothetical protein; Provisional

Probab=96.96  E-value=0.059  Score=61.30  Aligned_cols=92  Identities=9%  Similarity=0.043  Sum_probs=45.7

Q ss_pred             CCCEEEEEeCC------CeEEEEECCCCceeEE--eccCCCCeeEEEEcCCCCEEEEEECCC-----cEEEEeCCCCcEE
Q 005277          474 QGHYFASSSHD------RTARIWSMDRIQPLRI--MAGHLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSSGECV  540 (704)
Q Consensus       474 ~~~~l~sgs~d------g~i~lwd~~~~~~~~~--~~~~~~~V~~v~~~p~~~~l~tgs~dg-----~I~iwd~~~~~~~  540 (704)
                      ++..++.||.+      ..+..||..+..-...  +.........+.  -++.+.+.|+.++     ++..||..+..-.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            56667777643      3466778766532211  111111111222  3567777887654     4788998776432


Q ss_pred             EE--eecCCCCEEEEEEecCCCEEEEEeCCC
Q 005277          541 RI--FIGHRSMILSLAMSPDGRYMASGDEDG  569 (704)
Q Consensus       541 ~~--~~~h~~~i~~l~~spdg~~l~sg~~dg  569 (704)
                      ..  +.........+  .-+|+..+.||.++
T Consensus       381 ~~~~mp~~r~~~~~~--~~~g~IYviGG~~~  409 (557)
T PHA02713        381 MLPDMPIALSSYGMC--VLDQYIYIIGGRTE  409 (557)
T ss_pred             ECCCCCcccccccEE--EECCEEEEEeCCCc
Confidence            21  11111111122  22677777787653

>smart00320 WD40 WD40 repeats

Probab=96.93  E-value=0.0025  Score=42.20  Aligned_cols=38  Identities=45%  Similarity=0.786  Sum_probs=33.8

Q ss_pred             ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277          454 ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (704)
Q Consensus       454 ~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd  491 (704)
                      .....+..|...|+++.|.+.+.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45566778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.88  E-value=0.019  Score=66.27  Aligned_cols=133  Identities=18%  Similarity=0.190  Sum_probs=96.4

Q ss_pred             eCCCeEEEEECCCCceeEEeccCCCC-eeEEEEcCC-------CCEEEEEECCCcEEEEeCCCC--cEEEEe---ecCCC
Q 005277          482 SHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHIN-------CNYIATGSSDKTVRLWDVSSG--ECVRIF---IGHRS  548 (704)
Q Consensus       482 s~dg~i~lwd~~~~~~~~~~~~~~~~-V~~v~~~p~-------~~~l~tgs~dg~I~iwd~~~~--~~~~~~---~~h~~  548 (704)
                      .....++-.|+++++.+..+..+... |..++  |+       ..-.++|-.+..+..||.|-.  +++...   .....
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence            45688999999999999998877643 54443  43       345677888999999999853  233211   12345


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee-eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRC-VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY  627 (704)
Q Consensus       549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~-~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (704)
                      ..+|++-+.+| +||+|+.+|.|++||- .|+. -..+.+-..+|..+..                              
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDv------------------------------  626 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDV------------------------------  626 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEe------------------------------
Confidence            67888888777 6899999999999994 4433 3345667889999988                              


Q ss_pred             ecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277          628 FGCASCEGSLLASGSADCTVKLWDVT  653 (704)
Q Consensus       628 ~~~~s~~g~~lasgs~Dg~V~iWd~~  653 (704)
                          +.||++|++.+. ..+.+++..
T Consensus       627 ----t~DGkwilaTc~-tyLlLi~t~  647 (794)
T PF08553_consen  627 ----TADGKWILATCK-TYLLLIDTL  647 (794)
T ss_pred             ----cCCCcEEEEeec-ceEEEEEEe
Confidence                999999876664 577777764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.82  E-value=0.0013  Score=62.84  Aligned_cols=142  Identities=17%  Similarity=0.136  Sum_probs=85.2

Q ss_pred             EEEEeCCCeEEEEECCCCcee-EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEE-E
Q 005277          478 FASSSHDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSL-A  554 (704)
Q Consensus       478 l~sgs~dg~i~lwd~~~~~~~-~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l-~  554 (704)
                      +..-+.||.|+-++++..+.. +.-.-+....   ....-+..+++|+.+|.|.+|...- |.....+..-...|.++ .
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            344456788877777643221 1111111111   1112356789999999999998762 11111122222233332 2


Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCC-ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277          555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT-SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC  633 (704)
Q Consensus       555 ~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~-~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  633 (704)
                      -..++.+..+++.||.|+.|++.-++.+.....|. .++.....                                  +.
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~iv----------------------------------v~  155 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIV----------------------------------VG  155 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEE----------------------------------ec
Confidence            23356688899999999999999888887777776 44443333                                  45


Q ss_pred             CCCEEEEE--eCCCcEEEEeCCCCc
Q 005277          634 EGSLLASG--SADCTVKLWDVTTST  656 (704)
Q Consensus       634 ~g~~lasg--s~Dg~V~iWd~~~~~  656 (704)
                      .+.+++.+  |.|..++.|++..-.
T Consensus       156 sd~~i~~a~~S~d~~~k~W~ve~~~  180 (238)
T KOG2444|consen  156 SDEFLKIADTSHDRVLKKWNVEKIK  180 (238)
T ss_pred             CCceEEeeccccchhhhhcchhhhh
Confidence            56677777  788888888887543

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=96.79  E-value=0.0023  Score=42.33  Aligned_cols=31  Identities=23%  Similarity=0.431  Sum_probs=28.1

Q ss_pred             chHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Q 005277            2 DELQVVEFVATYLKKKGFSEAENALQAEIQR   32 (704)
Q Consensus         2 ~~~~~~~~v~~yl~~~~~~~~~~~~~~e~~~   32 (704)
                      ...+++++|++||.+.||..|..+|.+|+..
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~   32 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGL   32 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCC
Confidence            4578999999999999999999999999764

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.78  E-value=0.62  Score=52.58  Aligned_cols=99  Identities=8%  Similarity=0.032  Sum_probs=64.7

Q ss_pred             CCeEEEEeCCCCceeEEeecC-------------------------------CcCee-EEEEcCCCCEEEEEeCC-----
Q 005277          442 DTTIRLWSTKLNANLVCYKGH-------------------------------NYPVW-DVQFNPQGHYFASSSHD-----  484 (704)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h-------------------------------~~~V~-~v~~sp~~~~l~sgs~d-----  484 (704)
                      +|.|..+|..+++.+..+..-                               ...+| .+++.|...+++.+..+     
T Consensus       180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~  259 (527)
T TIGR03075       180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN  259 (527)
T ss_pred             CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence            678888898888877654321                               11233 24666666666655421     


Q ss_pred             C-----------eEEEEECCCCceeEEeccCCCCeeE---------EEEcCCCC---EEEEEECCCcEEEEeCCCCcEE
Q 005277          485 R-----------TARIWSMDRIQPLRIMAGHLSDVDC---------VRWHINCN---YIATGSSDKTVRLWDVSSGECV  540 (704)
Q Consensus       485 g-----------~i~lwd~~~~~~~~~~~~~~~~V~~---------v~~~p~~~---~l~tgs~dg~I~iwd~~~~~~~  540 (704)
                      +           .|.-.|+++++....++....++..         +....+|+   .++.+..+|.+++.|.++|+.+
T Consensus       260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            2           6777788899888777643332221         22224665   7788999999999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.75  E-value=0.3  Score=57.13  Aligned_cols=111  Identities=12%  Similarity=0.089  Sum_probs=74.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcC--------eeEEEEcC----------------CCCEEEEEeCCCeEE
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYP--------VWDVQFNP----------------QGHYFASSSHDRTAR  488 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~--------V~~v~~sp----------------~~~~l~sgs~dg~i~  488 (704)
                      +..|+.++.++.|.-.|..+++.+..+......        ...+.+..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            556777788888999999999888877643211        12233321                234788888999999


Q ss_pred             EEECCCCceeEEeccCCCCee-------------EEEEcC--CCCEEEEEEC----------CCcEEEEeCCCCcEEEEe
Q 005277          489 IWSMDRIQPLRIMAGHLSDVD-------------CVRWHI--NCNYIATGSS----------DKTVRLWDVSSGECVRIF  543 (704)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~-------------~v~~~p--~~~~l~tgs~----------dg~I~iwd~~~~~~~~~~  543 (704)
                      -.|.++++.+..+.. .+.|.             .+.-.|  .+..+++|+.          +|.|+-+|.++|+.+..+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998877642 22211             111112  2346666643          688999999999998876


Q ss_pred             e
Q 005277          544 I  544 (704)
Q Consensus       544 ~  544 (704)
                      .
T Consensus       353 ~  353 (764)
T TIGR03074       353 D  353 (764)
T ss_pred             e
Confidence            4

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK10115 protease 2; Provisional

Probab=96.69  E-value=2  Score=50.30  Aligned_cols=190  Identities=9%  Similarity=0.064  Sum_probs=99.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCC-----CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          353 GLNCASISQDGSLVAGGFSD-----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~d-----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      .+..+.|||||++||.+.+.     -.|++-|+.++..                           ....+.   +.-..+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~---------------------------l~~~i~---~~~~~~  177 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW---------------------------YPELLD---NVEPSF  177 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC---------------------------CCcccc---CcceEE
Confidence            36778899999999987553     2366666653110                           000011   111468


Q ss_pred             EEcCCCCEEEEEeCC------CeEEEEeCCCC--ceeEEeecCCcCee-EEEEcCCCCEEEEEe---CCCeEEEEECC--
Q 005277          428 SFSPLGDFILSSSAD------TTIRLWSTKLN--ANLVCYKGHNYPVW-DVQFNPQGHYFASSS---HDRTARIWSMD--  493 (704)
Q Consensus       428 ~~sp~~~~l~s~s~D------g~I~lwd~~~~--~~~~~~~~h~~~V~-~v~~sp~~~~l~sgs---~dg~i~lwd~~--  493 (704)
                      +|++|++.|+-+..+      ..|..|++.++  +....+.......+ .+..+.++++++..+   .++.+.+|+.+  
T Consensus       178 ~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~  257 (686)
T PRK10115        178 VWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELA  257 (686)
T ss_pred             EEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCC
Confidence            999999876644332      36788888887  44445554444444 333344787766554   34578888853  


Q ss_pred             CCceeEEeccCCCCeeEEEEcCCCCEEEEEEC----CCcEEEEeCC-CCcEEEEeecC-C-CCEEEEEEecCCCEEEEEe
Q 005277          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSS----DKTVRLWDVS-SGECVRIFIGH-R-SMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~----dg~I~iwd~~-~~~~~~~~~~h-~-~~i~~l~~spdg~~l~sg~  566 (704)
                      .+.+...+. +...+..-..+.. ..+..-+.    ...|...++. .++. ..+..+ . ..|..+.++ .+.++++..
T Consensus       258 ~~~~~~~~~-~~~~~~~~~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~  333 (686)
T PRK10115        258 DAEPFVFLP-RRKDHEYSLDHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEER  333 (686)
T ss_pred             CCCceEEEE-CCCCCEEEEEeCC-CEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEE
Confidence            333322222 2222222122333 33333322    2234444554 2322 233344 3 368888887 335556666


Q ss_pred             CCCeEEEEeC
Q 005277          567 EDGTIMMWDL  576 (704)
Q Consensus       567 ~dg~I~iwdl  576 (704)
                      .+|.-+++-+
T Consensus       334 ~~g~~~l~~~  343 (686)
T PRK10115        334 QRGLTSLRQI  343 (686)
T ss_pred             eCCEEEEEEE
Confidence            6776555543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.63  E-value=0.93  Score=48.43  Aligned_cols=234  Identities=11%  Similarity=0.065  Sum_probs=106.6

Q ss_pred             CCCEEEEEe-CCCeEEEEeCCCC----ceeEEeec---CC----cCeeEEEEcCCCCEEEEEe------CCCeEEEEECC
Q 005277          432 LGDFILSSS-ADTTIRLWSTKLN----ANLVCYKG---HN----YPVWDVQFNPQGHYFASSS------HDRTARIWSMD  493 (704)
Q Consensus       432 ~~~~l~s~s-~Dg~I~lwd~~~~----~~~~~~~~---h~----~~V~~v~~sp~~~~l~sgs------~dg~i~lwd~~  493 (704)
                      +.++|+..+ ..+.|.|.|+.+.    +..+++..   +.    ..-..+..-|+|..++++-      .-|.+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777665 6788999998843    23333332   10    1223345567898888863      33568888888


Q ss_pred             CCceeEEeccCCC---CeeEEEEcCCCCEEEEEEC--------------------CCcEEEEeCCCCcEEEEeecCCC--
Q 005277          494 RIQPLRIMAGHLS---DVDCVRWHINCNYIATGSS--------------------DKTVRLWDVSSGECVRIFIGHRS--  548 (704)
Q Consensus       494 ~~~~~~~~~~~~~---~V~~v~~~p~~~~l~tgs~--------------------dg~I~iwd~~~~~~~~~~~~h~~--  548 (704)
                      +.+..........   --..+-|+|..+.+++...                    ..++.+||+.+.+.++++.-...  
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            8777766653222   2345778899999988652                    35799999999999988864332  


Q ss_pred             CEEEEEEecCC--CE-EEEEeCCCeEEEEeC-CCCe----eeeeecCC-----------------Cceeeeeeeeeeehc
Q 005277          549 MILSLAMSPDG--RY-MASGDEDGTIMMWDL-ASGR----CVTPLMGH-----------------TSCVWTLAYRFLLLV  603 (704)
Q Consensus       549 ~i~~l~~spdg--~~-l~sg~~dg~I~iwdl-~~~~----~~~~~~~h-----------------~~~V~sl~~~~~~~~  603 (704)
                      ....+.|..+.  .+ ++.+.-.++|..|-- ..++    .+..+..-                 ..-|+.|..      
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i------  319 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI------  319 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE------
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE------
Confidence            35567776543  32 333334455555533 3332    12222110                 011222222      


Q ss_pred             cccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCcEEEEeCCCCccccccccc--cCcc-cc-ccccccCC
Q 005277          604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEK--SGTN-RL-RSLKTLPT  678 (704)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~~~~~~~~~~~~--~~~~-~~-~~l~~~~~  678 (704)
                                                  |.|.++|.... .+|.|+.||+...........-  .+.. .. .....-..
T Consensus       320 ----------------------------SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~  371 (461)
T PF05694_consen  320 ----------------------------SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKR  371 (461)
T ss_dssp             -----------------------------TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS----
T ss_pred             ----------------------------ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccc
Confidence                                        88888886555 7899999999987654332110  0000 00 00000011


Q ss_pred             CCcCeEEEEEccCCcEEEEee
Q 005277          679 KSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       679 ~~~~V~~l~fs~~g~~La~gs  699 (704)
                      ..+...-|+.|.||+.|.+..
T Consensus       372 l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  372 LRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             --S----EEE-TTSSEEEEE-
T ss_pred             cCCCCCeEEEccCCeEEEEEe
Confidence            233457788999998776543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.61  E-value=0.03  Score=59.89  Aligned_cols=143  Identities=14%  Similarity=0.175  Sum_probs=99.6

Q ss_pred             CCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC-------EEEEEeCCCeEEEEECCCCce--eEEe
Q 005277          432 LGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-------YFASSSHDRTARIWSMDRIQP--LRIM  501 (704)
Q Consensus       432 ~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-------~l~sgs~dg~i~lwd~~~~~~--~~~~  501 (704)
                      +.++|+ ++..-..++-.|++.|+.+...+-|.. |.-+.+.|+.+       .-+.|-.|..|.-||.+-...  +...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            444444 555556688889999999998887765 77777887543       234566788999999874322  2222


Q ss_pred             ccC----CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277          502 AGH----LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       502 ~~~----~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~  577 (704)
                      .+|    .....|.+-..+ .+|++||.+|.||+||--..+....+.+-..+|..+..+.+|++|++.+ +..+.+.++.
T Consensus       423 q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             eccccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            222    234566665444 4899999999999999743344455778888999999999999987655 4566666653

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.61  E-value=0.022  Score=65.68  Aligned_cols=100  Identities=20%  Similarity=0.286  Sum_probs=76.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCce-eEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEE
Q 005277          433 GDFILSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV  511 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v  511 (704)
                      +..++.|+..|.|-..|+...-+ ...-..-.++|++++|+.+|..++.|-.+|.|.+||+.++++++.+..|..+.+.+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            55688888888888888764311 12222346899999999999999999999999999999999999988887777766


Q ss_pred             EEc---CCCCEEEEEECCCcEEEEeC
Q 005277          512 RWH---INCNYIATGSSDKTVRLWDV  534 (704)
Q Consensus       512 ~~~---p~~~~l~tgs~dg~I~iwd~  534 (704)
                      -++   .++..+.++...|.  +|.+
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEEE
Confidence            544   34556777777776  5544

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.57  E-value=0.065  Score=57.39  Aligned_cols=137  Identities=15%  Similarity=0.237  Sum_probs=90.9

Q ss_pred             CCCEE-EEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCE-------EEEEeCCCeEEEEeCCCCe--eeeee
Q 005277          516 NCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY-------MASGDEDGTIMMWDLASGR--CVTPL  585 (704)
Q Consensus       516 ~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~-------l~sg~~dg~I~iwdl~~~~--~~~~~  585 (704)
                      +.++| .++.....++-.|+..|+.+..+.-+.. |+-+.+.|+++.       -+.|-.|..|.-||.+-..  .+..-
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            34444 4466677899999999999999887766 777888886542       2346678889999987321  12222


Q ss_pred             cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccccc
Q 005277          586 MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS  665 (704)
Q Consensus       586 ~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~  665 (704)
                      ++|.- .+.-.|                       .+.      . .....+||+||.+|.||+||- .+.         
T Consensus       423 q~kqy-~~k~nF-----------------------sc~------a-TT~sG~IvvgS~~GdIRLYdr-i~~---------  461 (644)
T KOG2395|consen  423 QSKQY-STKNNF-----------------------SCF------A-TTESGYIVVGSLKGDIRLYDR-IGR---------  461 (644)
T ss_pred             ecccc-cccccc-----------------------cee------e-ecCCceEEEeecCCcEEeehh-hhh---------
Confidence            22210 000001                       000      0 334458999999999999997 322         


Q ss_pred             CccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          666 GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       666 ~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                           +.-..+|+...+|..|..+.+|.++.+.+
T Consensus       462 -----~AKTAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  462 -----RAKTALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             -----hhhhcccccCCceeeEEeeccCcEEEEec
Confidence                 12346889999999999999999877654

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.57  E-value=0.71  Score=48.80  Aligned_cols=139  Identities=14%  Similarity=0.127  Sum_probs=77.0

Q ss_pred             EEEcCCCCEEE-EEeCCCe--EEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277          427 ASFSPLGDFIL-SSSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       427 l~~sp~~~~l~-s~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~  503 (704)
                      =+|.++|+.|+ ++..||.  +.+.|+.+++..+--.+-........++|+++.++-...+..++-.|+++.+....+..
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            35778887655 4554555  55567777665554443223334677889888877666678899999999887777766


Q ss_pred             CCCCeeEEEEc--CCCCEEEEEE---C-------------------CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC
Q 005277          504 HLSDVDCVRWH--INCNYIATGS---S-------------------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG  559 (704)
Q Consensus       504 ~~~~V~~v~~~--p~~~~l~tgs---~-------------------dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg  559 (704)
                      ...-+....|.  .++..++-.-   .                   ...|...|+.+|+....+. ....+..+.|||..
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD  199 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence            66666556664  4565554321   1                   1236666888887655553 55678899999966


Q ss_pred             CEEEEEe
Q 005277          560 RYMASGD  566 (704)
Q Consensus       560 ~~l~sg~  566 (704)
                      ..+++-|
T Consensus       200 p~li~fC  206 (386)
T PF14583_consen  200 PTLIMFC  206 (386)
T ss_dssp             EEEEEEE
T ss_pred             CCEEEEe
Confidence            5555543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.50  E-value=0.009  Score=68.70  Aligned_cols=101  Identities=15%  Similarity=0.289  Sum_probs=77.1

Q ss_pred             CCCEEEEEeCCCeEEEEECCCC-ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEE
Q 005277          474 QGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILS  552 (704)
Q Consensus       474 ~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~  552 (704)
                      .+..++.|+..|.+-..|+... .+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            4567888888899988888653 222222234578999999999999999999999999999999999988877766555


Q ss_pred             EE---EecCCCEEEEEeCCCeEEEEeC
Q 005277          553 LA---MSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       553 l~---~spdg~~l~sg~~dg~I~iwdl  576 (704)
                      +-   +..++..+.++...|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            44   4445667888877775  5554

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.49  E-value=0.31  Score=56.52  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=21.2

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEE
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRL  447 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~l  447 (704)
                      .-.|..|.++|+|.+|+..|..|.+.+
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~  110 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVL  110 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence            357889999999999998887664433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.46  E-value=0.21  Score=42.84  Aligned_cols=100  Identities=17%  Similarity=0.119  Sum_probs=67.7

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277          424 VYSASFSP---LG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       424 V~~l~~sp---~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      |+++++..   +| +.|+.||.|..||+|+-+  ..+..+.. ...|+++.-... ..|+.+..+|+|.+|+-..  .+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence            56666654   33 479999999999999864  45555654 456777776655 6799999999999997632  333


Q ss_pred             EeccCCCCeeEEEEcC-CC---CEEEEEECCCcEE
Q 005277          500 IMAGHLSDVDCVRWHI-NC---NYIATGSSDKTVR  530 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p-~~---~~l~tgs~dg~I~  530 (704)
                      ..+ ....+.++.+.. ++   ..|++|-.+|.|-
T Consensus        76 RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            333 233466665543 32   4788888888774

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.45  E-value=1.6  Score=46.24  Aligned_cols=237  Identities=17%  Similarity=0.149  Sum_probs=116.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC-
Q 005277          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL-  432 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-  432 (704)
                      -++|+|.|||+++++ ...|.|++++...........                      ..............++++|+ 
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~----------------------~~~v~~~~~~gllgia~~p~f   60 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVAD----------------------LPEVFADGERGLLGIAFHPDF   60 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-----------------------TTTBTSTTBSEEEEEE-TTC
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecc----------------------cccccccccCCcccceecccc
Confidence            578999999987765 569999999833211000000                      00112334567899999994 


Q ss_pred             --CCEEEEEeC-C--------CeEEEEeCCCC-------ceeE-Eeec---CCcCeeEEEEcCCCCEEEEEeCCC-----
Q 005277          433 --GDFILSSSA-D--------TTIRLWSTKLN-------ANLV-CYKG---HNYPVWDVQFNPQGHYFASSSHDR-----  485 (704)
Q Consensus       433 --~~~l~s~s~-D--------g~I~lwd~~~~-------~~~~-~~~~---h~~~V~~v~~sp~~~~l~sgs~dg-----  485 (704)
                        +.+|..... .        ..|.-|.....       +.+. .+..   ....-..|.|.|+|.++++.+..+     
T Consensus        61 ~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~  140 (331)
T PF07995_consen   61 ASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNA  140 (331)
T ss_dssp             CCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGG
T ss_pred             CCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccc
Confidence              334443322 1        23444444333       1111 1122   233456799999997766665332     


Q ss_pred             --------eEEEEECCCCc------------eeEEeccCCCCeeEEEEcCC-CCEEEE-EECCCcEEEEeCCCC------
Q 005277          486 --------TARIWSMDRIQ------------PLRIMAGHLSDVDCVRWHIN-CNYIAT-GSSDKTVRLWDVSSG------  537 (704)
Q Consensus       486 --------~i~lwd~~~~~------------~~~~~~~~~~~V~~v~~~p~-~~~l~t-gs~dg~I~iwd~~~~------  537 (704)
                              .|.-.+.+..-            ....+.........++|+|. |.+.++ .+.++.=.|--+..|      
T Consensus       141 ~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP  220 (331)
T PF07995_consen  141 QDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWP  220 (331)
T ss_dssp             CSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TT
T ss_pred             cccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCC
Confidence                    23223322110            01111111223457899998 555443 123332233222221      


Q ss_pred             -----------------------cEEEEeecCCCCEEEEEEec-------CCCEEEEEeCCCeEEEEeCCCCeeee---e
Q 005277          538 -----------------------ECVRIFIGHRSMILSLAMSP-------DGRYMASGDEDGTIMMWDLASGRCVT---P  584 (704)
Q Consensus       538 -----------------------~~~~~~~~h~~~i~~l~~sp-------dg~~l~sg~~dg~I~iwdl~~~~~~~---~  584 (704)
                                             .++..+..| ..+..+.|-.       .|.++++.-..+.|....+..+..+.   .
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~  299 (331)
T PF07995_consen  221 YCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE  299 (331)
T ss_dssp             TBSSSCSTTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE
T ss_pred             CCcCCCCCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE
Confidence                                   122333333 5566777764       45566666666777777776443221   1


Q ss_pred             -ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEE
Q 005277          585 -LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVK  648 (704)
Q Consensus       585 -~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~  648 (704)
                       +......+..+.+                                  .|||.++++-+.+|.|.
T Consensus       300 ~~~~~~~r~~~v~~----------------------------------~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  300 FLGGFGGRPRDVAQ----------------------------------GPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             ECTTSSS-EEEEEE----------------------------------ETTSEEEEEE-TTTTEE
T ss_pred             ccccCCCCceEEEE----------------------------------cCCCeEEEEECCCCeEe
Confidence             1233346667776                                  88998888888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.42  E-value=0.26  Score=42.25  Aligned_cols=100  Identities=16%  Similarity=0.179  Sum_probs=68.4

Q ss_pred             eeEEEEcC---CC-CEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 005277          466 VWDVQFNP---QG-HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR  541 (704)
Q Consensus       466 V~~v~~sp---~~-~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~  541 (704)
                      |+++++..   +| +.|++||.|..|++|+-+  ..+..+. -.+.|.+++-... ..++.+..+|+|.+|+-  ...+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            56666655   22 579999999999999865  3555555 3466777776554 67999999999999985  22333


Q ss_pred             EeecCCCCEEEEEEec-C--C-CEEEEEeCCCeEE
Q 005277          542 IFIGHRSMILSLAMSP-D--G-RYMASGDEDGTIM  572 (704)
Q Consensus       542 ~~~~h~~~i~~l~~sp-d--g-~~l~sg~~dg~I~  572 (704)
                      ..+ .+..++++++.. +  | .-|++|-.+|.|-
T Consensus        76 RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            333 334466666654 3  2 3688898888774

>PHA03098 kelch-like protein; Provisional

Probab=96.41  E-value=0.14  Score=58.28  Aligned_cols=146  Identities=12%  Similarity=0.034  Sum_probs=68.2

Q ss_pred             CCCEEEEEeCCC------eEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcee
Q 005277          432 LGDFILSSSADT------TIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQPL  498 (704)
Q Consensus       432 ~~~~l~s~s~Dg------~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~d-----g~i~lwd~~~~~~~  498 (704)
                      ++..++.|+.++      .+..||..+.+-...  +.........+.+  ++..++.||.+     ..+..||..+.+-.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            345555665432      467777765543221  1111111222222  67778888765     34667887664422


Q ss_pred             EEecc-CCCCeeEEEEcCCCCEEEEEECC------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC--
Q 005277          499 RIMAG-HLSDVDCVRWHINCNYIATGSSD------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG--  569 (704)
Q Consensus       499 ~~~~~-~~~~V~~v~~~p~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg--  569 (704)
                      ..-.. +...-.+++ .-++.+.+.|+.+      ..+..||..+++-...-..........+...++...+.||.++  
T Consensus       372 ~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  450 (534)
T PHA03098        372 EEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYID  450 (534)
T ss_pred             eCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCC
Confidence            21110 001111122 2356666777632      4588899877643221110001001112223566666666432  


Q ss_pred             ------eEEEEeCCCCe
Q 005277          570 ------TIMMWDLASGR  580 (704)
Q Consensus       570 ------~I~iwdl~~~~  580 (704)
                            .+.+||..+.+
T Consensus       451 ~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        451 NIKVYNIVESYNPVTNK  467 (534)
T ss_pred             CCcccceEEEecCCCCc
Confidence                  37777876654

>PRK10115 protease 2; Provisional

Probab=96.39  E-value=2  Score=50.24  Aligned_cols=111  Identities=8%  Similarity=-0.019  Sum_probs=68.8

Q ss_pred             cCeEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC------CeEEEE
Q 005277          422 GPVYSASFSPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD------RTARIW  490 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~-----s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d------g~i~lw  490 (704)
                      -.+..+.|+|++++|+.+     +...+|++.|+.++..+...-....  ..++|.++++.|+....+      ..|..+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            456788999999988744     2234588889987764322211211  459999998877665432      367778


Q ss_pred             ECCCC--ceeEEeccCCCCeeEEEEcC-CCCEEEEEEC---CCcEEEEeC
Q 005277          491 SMDRI--QPLRIMAGHLSDVDCVRWHI-NCNYIATGSS---DKTVRLWDV  534 (704)
Q Consensus       491 d~~~~--~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~---dg~I~iwd~  534 (704)
                      ++.+.  +-...+...........+.+ ++.+++..+.   ++.+.+|+.
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            88776  34445554333333223334 7887766543   457888885

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.38  E-value=0.62  Score=46.49  Aligned_cols=157  Identities=13%  Similarity=0.157  Sum_probs=91.9

Q ss_pred             EEcCCCCEEEEEeCC-----CeEEEEeCCCC-ceeEEeecCCcCeeEEEEcCCCCEEEEEeCC-----------------
Q 005277          428 SFSPLGDFILSSSAD-----TTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-----------------  484 (704)
Q Consensus       428 ~~sp~~~~l~s~s~D-----g~I~lwd~~~~-~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d-----------------  484 (704)
                      .|||||.+|+..-.|     |.|-|||.+.+ +.+..+..|.-.-..+.|.+||+.++.+...                 
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            589999999876443     78999998754 4566777887778899999999999887420                 


Q ss_pred             -CeEEEEECCCCceeEEe--c--cCCCCeeEEEEcCCCCEEEEEECCCc-----EEEEeCCCCcEEEEee-------cCC
Q 005277          485 -RTARIWSMDRIQPLRIM--A--GHLSDVDCVRWHINCNYIATGSSDKT-----VRLWDVSSGECVRIFI-------GHR  547 (704)
Q Consensus       485 -g~i~lwd~~~~~~~~~~--~--~~~~~V~~v~~~p~~~~l~tgs~dg~-----I~iwd~~~~~~~~~~~-------~h~  547 (704)
                       -++.+.|..++..+...  .  .+.-.|..++..++|...+.+-..|.     -.+=-.+.|+.+..+.       ...
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a  279 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA  279 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence             11222232233222211  1  12334666666666655444322211     1111112333333221       123


Q ss_pred             CCEEEEEEecCCCEEEEEe-CCCeEEEEeCCCCeeeee
Q 005277          548 SMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTP  584 (704)
Q Consensus       548 ~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~~~~~~  584 (704)
                      ..|-+++.+.+..+++..+ ..+...+||..+|..+..
T Consensus       280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence            4577888887666665555 455678999999987654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.35  E-value=0.52  Score=53.19  Aligned_cols=199  Identities=13%  Similarity=0.031  Sum_probs=118.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCC-cCee----------EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVW----------DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~----------~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      +..++.++.++.|.-.|..+++.+..+.... ..+.          .+++  .+..++.++.|+.+.-.|.++++.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4567777778899999999999887765321 1111          1122  2346777888999999999999988765


Q ss_pred             ccCCCC-eeEEEEcC--CCCEEEEEEC------CCcEEEEeCCCCcEEEEeecCCC------------------------
Q 005277          502 AGHLSD-VDCVRWHI--NCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRS------------------------  548 (704)
Q Consensus       502 ~~~~~~-V~~v~~~p--~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~------------------------  548 (704)
                      ...... -..+.-+|  .+..+++++.      +|.|.-+|..+|+.+..+..-..                        
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            421110 00111112  1335555542      68999999999998876532110                        


Q ss_pred             --------CEEEEEEecCCCEEEEEeCC-----C-----------eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcc
Q 005277          549 --------MILSLAMSPDGRYMASGDED-----G-----------TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVT  604 (704)
Q Consensus       549 --------~i~~l~~spdg~~l~sg~~d-----g-----------~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~  604 (704)
                              .-..+++.|...+++.+...     +           .|.-.|+++|+..-.++.....++......     
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~-----  301 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVN-----  301 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCC-----
Confidence                    01134566655566655422     1           566667777877766654333344332200     


Q ss_pred             ccccccccccccceeeeeeeEEeecccCCCCC---EEEEEeCCCcEEEEeCCCCccc
Q 005277          605 NAYLKISDKVSTGFLFYSLTIIYFGCASCEGS---LLASGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~---~lasgs~Dg~V~iWd~~~~~~~  658 (704)
                                          .....-...+|+   .++.++.+|.+.+.|-.+++.+
T Consensus       302 --------------------~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       302 --------------------EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             --------------------CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence                                000000023554   7889999999999999998765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.34  E-value=0.012  Score=56.40  Aligned_cols=105  Identities=17%  Similarity=0.187  Sum_probs=70.5

Q ss_pred             CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE-EEEEcCCCCEEEEEeC
Q 005277          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY-SASFSPLGDFILSSSA  441 (704)
Q Consensus       363 g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~s~s~  441 (704)
                      +.-+++|+.+|.|.+|++...+...                           .....-...|. .+.-..++.+.++++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~---------------------------d~~~s~~e~i~~~Ip~~~~~~~~c~~~~  122 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHS---------------------------DRVCSGEESIDLGIPNGRDSSLGCVGAQ  122 (238)
T ss_pred             CceEEeecccceEEEecCCccchHH---------------------------HhhhcccccceeccccccccceeEEecc
Confidence            4568999999999999987321110                           11111112222 2223334557889999


Q ss_pred             CCeEEEEeCCCCceeEEeecCC-cCeeEEEEcCCCCEEEEE--eCCCeEEEEECCC
Q 005277          442 DTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASS--SHDRTARIWSMDR  494 (704)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~l~sg--s~dg~i~lwd~~~  494 (704)
                      ||.|+.|++..++.+.....|+ .++.....+..+..++++  |.|..++.|++..
T Consensus       123 dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  123 DGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            9999999999888887777777 566666666666777777  7777777787764

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.32  E-value=0.35  Score=54.96  Aligned_cols=148  Identities=15%  Similarity=0.157  Sum_probs=76.9

Q ss_pred             EEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeE--EeecCCcCeeEEEEcCCCCEEEEEeCCCe-----EEEEEC
Q 005277          426 SASFSPLGDFILSSSAD------TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHDRT-----ARIWSM  492 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~D------g~I~lwd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~sgs~dg~-----i~lwd~  492 (704)
                      +++.. ++...++|+.|      .++..||..+.+-..  .+...........+  +|...|+||.||.     +-.||.
T Consensus       327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp  403 (571)
T KOG4441|consen  327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDP  403 (571)
T ss_pred             cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecC
Confidence            44444 34566788887      356677776654222  11111111111112  7888999998865     555666


Q ss_pred             CCCce--eEEeccCCCCeeEEEEcCCCCEEEEEECCC------cEEEEeCCCCcEEEEe--ecCCCCEEEEEEecCCCEE
Q 005277          493 DRIQP--LRIMAGHLSDVDCVRWHINCNYIATGSSDK------TVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYM  562 (704)
Q Consensus       493 ~~~~~--~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg------~I~iwd~~~~~~~~~~--~~h~~~i~~l~~spdg~~l  562 (704)
                      .+.+-  +..+......+..+.  -+|.+.++|+.++      ++..||..++.-...-  ........ ++ .-++...
T Consensus       404 ~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iY  479 (571)
T KOG4441|consen  404 VTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIY  479 (571)
T ss_pred             CCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEE
Confidence            55332  111111111122222  3677778887554      4678888776543221  11111111 22 2267888


Q ss_pred             EEEeCCCe-----EEEEeCCCCe
Q 005277          563 ASGDEDGT-----IMMWDLASGR  580 (704)
Q Consensus       563 ~sg~~dg~-----I~iwdl~~~~  580 (704)
                      +.||.||.     |..||..+.+
T Consensus       480 vvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  480 VVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             EECCccCCCccceEEEEcCCCCc
Confidence            88887762     6667776544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.28  E-value=0.13  Score=56.17  Aligned_cols=149  Identities=15%  Similarity=0.208  Sum_probs=91.2

Q ss_pred             ccCeEEEEEcCCCCEEE-EEe--CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC----CCEEEEEeCCCeEEEEECC
Q 005277          421 SGPVYSASFSPLGDFIL-SSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ----GHYFASSSHDRTARIWSMD  493 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~-s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~----~~~l~sgs~dg~i~lwd~~  493 (704)
                      -.+|.+++|. ||+.++ +.-  .+|.+++=|.   ..+    |.-..|..+.|.|-    -..+...-+...|.+|-+.
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            3589999998 565444 432  3344433221   122    23346889999994    3345556678999999875


Q ss_pred             -----CCceeEEeccC---CCC--eeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEecCCCEE
Q 005277          494 -----RIQPLRIMAGH---LSD--VDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYM  562 (704)
Q Consensus       494 -----~~~~~~~~~~~---~~~--V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~~l  562 (704)
                           +.+.+..-..+   .-+  -..+.|||....|++-.....-.+++++. +..+..-....+.|.|.+|.+||+.|
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence                 22222221111   111  24578999999998876665555677763 33343333567889999999999988


Q ss_pred             EEEeC-CCeEEEEeCC
Q 005277          563 ASGDE-DGTIMMWDLA  577 (704)
Q Consensus       563 ~sg~~-dg~I~iwdl~  577 (704)
                      +++-. .=.-+|||-.
T Consensus       171 VVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEeCCeEEEEEecCc
Confidence            76543 3346788743

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.13  E-value=2.4  Score=45.83  Aligned_cols=82  Identities=18%  Similarity=0.290  Sum_probs=60.0

Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEE-EEEecC-----------------CCEE-EEEe
Q 005277          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILS-LAMSPD-----------------GRYM-ASGD  566 (704)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~-l~~spd-----------------g~~l-~sg~  566 (704)
                      ..+.+++.+|++++.|+...=|.|.++|+.++..++.++|-.+.=.. +.....                 ..+| +-+-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            45778999999999999888899999999999999988876553111 111001                 1123 3456


Q ss_pred             CCCeEEEEeCCCCeeeeeecC
Q 005277          567 EDGTIMMWDLASGRCVTPLMG  587 (704)
Q Consensus       567 ~dg~I~iwdl~~~~~~~~~~~  587 (704)
                      .-|.|-||.+++|..+..+..
T Consensus       388 rRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             cCCeEEEEecCCCCEEEEEEe
Confidence            789999999999998887753

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.95  E-value=1.7  Score=43.79  Aligned_cols=118  Identities=14%  Similarity=0.207  Sum_probs=89.1

Q ss_pred             ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005277          460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE  538 (704)
Q Consensus       460 ~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~  538 (704)
                      .+-...+.++.|+|+.+.+++........+|=...+..++.+.- ...+...+.+..+++++++--.++.+.++.+..+.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            34455699999999999988888888888887778888887752 23556778888888888888888999888776542


Q ss_pred             EEEEe---------ecC-CCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277          539 CVRIF---------IGH-RSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       539 ~~~~~---------~~h-~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~  577 (704)
                      .+...         ..+ +...-.++|+|....|..+-+-.-+.||...
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            22111         122 4567889999999989888888878777765

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.91  E-value=0.66  Score=46.64  Aligned_cols=166  Identities=11%  Similarity=0.170  Sum_probs=115.1

Q ss_pred             CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC-CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~  497 (704)
                      |-...|.++.|+|+.+.|++......-.||=...|+.+.++.-. -...-.|.+..+|.+.++--.++.+.++.++....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            44456999999999999998888888878777778888776531 22344688888888888877899999988875432


Q ss_pred             eEEe----------ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-E--EEEeecCC-------CCEEEEEEec
Q 005277          498 LRIM----------AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-C--VRIFIGHR-------SMILSLAMSP  557 (704)
Q Consensus       498 ~~~~----------~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~--~~~~~~h~-------~~i~~l~~sp  557 (704)
                      +...          .........++|.|....|+.+-...-+.||.+..+. .  +.....+.       ..|+++.|.+
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~  242 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA  242 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence            2211          1224567889999999999998888888888775332 1  11111111       2467788887


Q ss_pred             -CCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277          558 -DGRYMASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       558 -dg~~l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                       .+..|+-+.+++.+.-.|.. |.++..+
T Consensus       243 ~~~~LLVLS~ESr~l~Evd~~-G~~~~~l  270 (316)
T COG3204         243 ITNSLLVLSDESRRLLEVDLS-GEVIELL  270 (316)
T ss_pred             CCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence             46677778888888888854 4444444

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.89  E-value=5  Score=46.86  Aligned_cols=183  Identities=9%  Similarity=0.145  Sum_probs=113.8

Q ss_pred             EEEEEeCCCeEEEEeCCCCce--eEEeecCCcCeeEEEEcCCCCEEEEEeCC--------------CeEEEEECCCCcee
Q 005277          435 FILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSSHD--------------RTARIWSMDRIQPL  498 (704)
Q Consensus       435 ~l~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~v~~sp~~~~l~sgs~d--------------g~i~lwd~~~~~~~  498 (704)
                      .|+++.. +.+++--++.-+.  +++.. -..+...+++.+....+++.+..              ..++++|-++.+.+
T Consensus       686 ~l~~~~~-~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl  763 (1096)
T KOG1897|consen  686 SLASANG-GALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL  763 (1096)
T ss_pred             eEEEecC-CceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence            4555554 4577766654332  23333 23456677787755555554421              23566666665544


Q ss_pred             EEeccC----CCCeeEEEEcCC-CCEEEEEE----------CCCcEEEEeCCCCcEEEEeecC--CCCEEEEEEecCCCE
Q 005277          499 RIMAGH----LSDVDCVRWHIN-CNYIATGS----------SDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRY  561 (704)
Q Consensus       499 ~~~~~~----~~~V~~v~~~p~-~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h--~~~i~~l~~spdg~~  561 (704)
                      ....-.    .-.+.++.|+.+ +.++++|+          ..|.|.++.+..++.+.....+  .+.+.++..- +|++
T Consensus       764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkl  842 (1096)
T KOG1897|consen  764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKL  842 (1096)
T ss_pred             eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeE
Confidence            332211    123555668776 77888876          3477888887775545444332  3445444432 6777


Q ss_pred             EEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEE
Q 005277          562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG  641 (704)
Q Consensus       562 l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasg  641 (704)
                      ||.-  ...|++|++.+.+.++.-..|..++..+..                                  ...|..+++|
T Consensus       843 lA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l----------------------------------~v~gdeI~Vg  886 (1096)
T KOG1897|consen  843 LAGI--NQSVRLYEWTTERELRIECNISNPIIALDL----------------------------------QVKGDEIAVG  886 (1096)
T ss_pred             EEec--CcEEEEEEccccceehhhhcccCCeEEEEE----------------------------------EecCcEEEEe
Confidence            7644  558999999999887777778888888877                                  6788999999


Q ss_pred             eCCCcEEEEeCCCCc
Q 005277          642 SADCTVKLWDVTTST  656 (704)
Q Consensus       642 s~Dg~V~iWd~~~~~  656 (704)
                      ..-+++.+......+
T Consensus       887 Dlm~Sitll~y~~~e  901 (1096)
T KOG1897|consen  887 DLMRSITLLQYKGDE  901 (1096)
T ss_pred             eccceEEEEEEeccC
Confidence            988888877766544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.85  E-value=0.61  Score=47.24  Aligned_cols=153  Identities=17%  Similarity=0.129  Sum_probs=93.9

Q ss_pred             CeeEEEEcCCCCEEEEEE---CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEe-CCCCeee
Q 005277          507 DVDCVRWHINCNYIATGS---SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD-LASGRCV  582 (704)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs---~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwd-l~~~~~~  582 (704)
                      .+...+++++++.++...   ....++++.  .+....... ....++.-.|+++|...+....+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688899999999887655   333455554  333333321 223788889999988777767666667763 3333221


Q ss_pred             -eeecC--CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe---CCCcEEEEeCCCCc
Q 005277          583 -TPLMG--HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS---ADCTVKLWDVTTST  656 (704)
Q Consensus       583 -~~~~~--h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs---~Dg~V~iWd~~~~~  656 (704)
                       .....  -.+.|.++.+                                  ||||..+|...   .++.|.|=-+....
T Consensus       102 ~~~v~~~~~~~~I~~l~v----------------------------------SpDG~RvA~v~~~~~~~~v~va~V~r~~  147 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRV----------------------------------SPDGTRVAVVVEDGGGGRVYVAGVVRDG  147 (253)
T ss_pred             eEEecccccCCceEEEEE----------------------------------CCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence             11111  1127888888                                  99999887665   45778887665433


Q ss_pred             cccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       657 ~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      .-.      .......+.........+..+.|.+++.+++.+...+
T Consensus       148 ~g~------~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  148 DGV------PRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             CCC------cceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence            210      0000011222334467899999999999888876654

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.78  E-value=2.4  Score=45.39  Aligned_cols=151  Identities=16%  Similarity=0.198  Sum_probs=78.0

Q ss_pred             EcCCCCEEEEEe------CCCeEEEEeCCCCceeEEeecC---CcCeeEEEEcCCCCEEEEEeC----------------
Q 005277          429 FSPLGDFILSSS------ADTTIRLWSTKLNANLVCYKGH---NYPVWDVQFNPQGHYFASSSH----------------  483 (704)
Q Consensus       429 ~sp~~~~l~s~s------~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~v~~sp~~~~l~sgs~----------------  483 (704)
                      .-|+|+.++|+-      .-|-+.+.|-++..........   ..--.++-|.|..+.++|...                
T Consensus       137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~  216 (461)
T PF05694_consen  137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE  216 (461)
T ss_dssp             E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred             ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence            346888888752      2256888888877776665532   233467888888888888642                


Q ss_pred             ----CCeEEEEECCCCceeEEeccCCC--CeeEEEEc--CCCCEEEEEE-CCCcEEEEeC-CCCc----EEEEeec----
Q 005277          484 ----DRTARIWSMDRIQPLRIMAGHLS--DVDCVRWH--INCNYIATGS-SDKTVRLWDV-SSGE----CVRIFIG----  545 (704)
Q Consensus       484 ----dg~i~lwd~~~~~~~~~~~~~~~--~V~~v~~~--p~~~~l~tgs-~dg~I~iwd~-~~~~----~~~~~~~----  545 (704)
                          ..++.+||+.+.+.++.+.-...  ....|.|.  |+..+=++|+ -.++|..|-- ..+.    .+-.+..    
T Consensus       217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~  296 (461)
T PF05694_consen  217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE  296 (461)
T ss_dssp             HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred             cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence                47899999999999998874332  34567775  4455555544 3444544433 3332    1111111    


Q ss_pred             -C------------CCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCCC
Q 005277          546 -H------------RSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG  579 (704)
Q Consensus       546 -h------------~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~  579 (704)
                       -            ..-|+.|.+|.|.++|...+ .+|.|+.||+...
T Consensus       297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence             0            24579999999999988765 7899999999764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.67  E-value=1.6  Score=43.75  Aligned_cols=196  Identities=13%  Similarity=0.065  Sum_probs=108.5

Q ss_pred             CeeEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeEEeccCC-CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 005277          465 PVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLRIMAGHL-SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR  541 (704)
Q Consensus       465 ~V~~v~~sp~~~~l~sgs~dg--~i~lwd~~~~~~~~~~~~~~-~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~  541 (704)
                      -...+.|..+|.++-+.+.-|  .|+.+|+.+++......-.. ---..++... +......-.++...+||..+.+.+.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEE
Confidence            345688877888888887655  78999999988776544221 1123344432 2333334478899999999999888


Q ss_pred             EeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC--Cceeee---eeeeeeehcccccccccccccc
Q 005277          542 IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH--TSCVWT---LAYRFLLLVTNAYLKISDKVST  616 (704)
Q Consensus       542 ~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h--~~~V~s---l~~~~~~~~~~~~~~~~~~~~~  616 (704)
                      .+.-. +.=..++  .||..|+.......|+++|..+.+....+...  ..+|..   +.|                   
T Consensus       125 ~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~-------------------  182 (264)
T PF05096_consen  125 TFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY-------------------  182 (264)
T ss_dssp             EEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE-------------------
T ss_pred             EEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE-------------------
Confidence            87533 3334555  47888888888889999999888776665432  223322   333                   


Q ss_pred             ceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccC-CcEE
Q 005277          617 GFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR-NLLF  695 (704)
Q Consensus       617 ~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~-g~~L  695 (704)
                                      -+|.+.|-.=....|..-|..++.....+.-..-......-........-.+.++|.|. +.++
T Consensus       183 ----------------i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~  246 (264)
T PF05096_consen  183 ----------------INGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLF  246 (264)
T ss_dssp             ----------------ETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEE
T ss_pred             ----------------EcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEE
Confidence                            14444454445556666676666654333211000000000001112456789999875 5666


Q ss_pred             EEee
Q 005277          696 AAGA  699 (704)
Q Consensus       696 a~gs  699 (704)
                      ++|-
T Consensus       247 vTGK  250 (264)
T PF05096_consen  247 VTGK  250 (264)
T ss_dssp             EEET
T ss_pred             EEeC
Confidence            6663

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.67  E-value=2.7  Score=42.19  Aligned_cols=158  Identities=11%  Similarity=0.057  Sum_probs=100.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceeEEeecC-CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277          423 PVYSASFSPLGDFILSSSADT--TIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg--~I~lwd~~~~~~~~~~~~h-~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      -..++.|..++.++-|.+.-|  .|+.+|+.+++......-. ..---.++.. +++.+.-.=.++.+.+||.++.+.+.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence            345788877787777887766  6899999999876554422 1112233333 22333333467899999999998888


Q ss_pred             EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-----CCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMMW  574 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~i~~l~~spdg~~l~sg~~dg~I~iw  574 (704)
                      .+. ..+.=..++  .+++.|+.......++.+|..+.+..+.+....     ..++-+.|- +|...|=.=....|...
T Consensus       125 ~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I  200 (264)
T PF05096_consen  125 TFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI  200 (264)
T ss_dssp             EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence            876 334556666  567777777777789999998887776654322     245667776 67666656667788888


Q ss_pred             eCCCCeeeeee
Q 005277          575 DLASGRCVTPL  585 (704)
Q Consensus       575 dl~~~~~~~~~  585 (704)
                      |..+|+.+..+
T Consensus       201 dp~tG~V~~~i  211 (264)
T PF05096_consen  201 DPETGKVVGWI  211 (264)
T ss_dssp             ETTT-BEEEEE
T ss_pred             eCCCCeEEEEE
Confidence            99999877655

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.59  E-value=0.035  Score=39.77  Aligned_cols=32  Identities=22%  Similarity=0.342  Sum_probs=29.0

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMA  381 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~  381 (704)
                      ....|.+++|+|...+||.|+.+|.|.|+.++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            34569999999999999999999999999985

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.57  E-value=1  Score=45.00  Aligned_cols=101  Identities=14%  Similarity=0.176  Sum_probs=68.8

Q ss_pred             eeEEEEcCC-CCEEEEEeCCCe-EEEEECCCCceeEEeccCCCC--eeEEEEcCCCCEEEEEEC-----CCcEEEEeCCC
Q 005277          466 VWDVQFNPQ-GHYFASSSHDRT-ARIWSMDRIQPLRIMAGHLSD--VDCVRWHINCNYIATGSS-----DKTVRLWDVSS  536 (704)
Q Consensus       466 V~~v~~sp~-~~~l~sgs~dg~-i~lwd~~~~~~~~~~~~~~~~--V~~v~~~p~~~~l~tgs~-----dg~I~iwd~~~  536 (704)
                      ...|.|+|. ..-++.+-.-|+ ..++|....+....+....+.  .-.-.|||+|.+|...-.     .|.|-+||.+.
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            335777774 444555555454 567888776655444322211  112368999999987543     37899999985


Q ss_pred             C-cEEEEeecCCCCEEEEEEecCCCEEEEEe
Q 005277          537 G-ECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       537 ~-~~~~~~~~h~~~i~~l~~spdg~~l~sg~  566 (704)
                      + +.+..+..|.-....+.|.+||+.|+.+.
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            4 45667778888889999999999998764

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.47  E-value=2.7  Score=40.86  Aligned_cols=133  Identities=12%  Similarity=0.224  Sum_probs=85.1

Q ss_pred             CcCeeEEEEcCCCCEEEEEeC---------CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEE-EECCCcEEEE
Q 005277          463 NYPVWDVQFNPQGHYFASSSH---------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLW  532 (704)
Q Consensus       463 ~~~V~~v~~sp~~~~l~sgs~---------dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t-gs~dg~I~iw  532 (704)
                      .....+-..+|+|++++-.-.         .|.++.|-...  .+..+.....--+.++|+.+.+.+.. -+.+-+|.-|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            345667778999998543222         24444444322  22222222233457889877766654 5567778778


Q ss_pred             e--CCCCcE-----EEEeec----CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277          533 D--VSSGEC-----VRIFIG----HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       533 d--~~~~~~-----~~~~~~----h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      |  ..+|..     +..+..    ..-..-.+++..+|++.++.-..|+|...|..+|+.+..+.-....|++++|
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF  261 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF  261 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence            7  555532     222221    0111234566668888888889999999999999999999888889999988

>PHA03098 kelch-like protein; Provisional

Probab=95.47  E-value=0.47  Score=53.92  Aligned_cols=64  Identities=13%  Similarity=0.094  Sum_probs=33.5

Q ss_pred             CCCEEEEEECC-----CcEEEEeCCCCcEEEEeec-CCCCEEEEEEecCCCEEEEEeCC------CeEEEEeCCCCe
Q 005277          516 NCNYIATGSSD-----KTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASGDED------GTIMMWDLASGR  580 (704)
Q Consensus       516 ~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~-h~~~i~~l~~spdg~~l~sg~~d------g~I~iwdl~~~~  580 (704)
                      ++.+++.|+.+     ..+..||..+++-...-.- +...-.+++ .-+++..+.||.+      ..+..||+.+.+
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            56677777755     3477888876643221110 111111122 2356767777632      357788876653

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.29  E-value=1.4  Score=49.79  Aligned_cols=159  Identities=13%  Similarity=0.164  Sum_probs=85.2

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe----ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY----KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~----~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~  497 (704)
                      +.+..+.|+.+. .|++...+|++++|++. |..+..+    ......|..+.+..+|-  ++-..+|.+.+-.-.....
T Consensus        84 ~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV--avlt~~g~v~~i~~~~~~~  159 (829)
T KOG2280|consen   84 GELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV--AVLTVSGQVILINGVEEPK  159 (829)
T ss_pred             CCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce--EEEecCCcEEEEcCCCcch
Confidence            478899999655 47777899999999987 3333221    22233455555554553  3333445555443222212


Q ss_pred             eEEecc-CCCCeeEEEEc--CCC---CEEEEEE-CCCcEEEEeC--CCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC
Q 005277          498 LRIMAG-HLSDVDCVRWH--INC---NYIATGS-SDKTVRLWDV--SSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (704)
Q Consensus       498 ~~~~~~-~~~~V~~v~~~--p~~---~~l~tgs-~dg~I~iwd~--~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d  568 (704)
                      ++.+.. ......+.+|.  +++   ..++--. ..+ ..++..  .+.+... +......+..+..||++++|+--..+
T Consensus       160 ~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~-~~~~~~~~~ki~VS~n~~~laLyt~~  237 (829)
T KOG2280|consen  160 LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHA-LSWPNSSVVKISVSPNRRFLALYTET  237 (829)
T ss_pred             hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccc-cCCCCceEEEEEEcCCcceEEEEecC
Confidence            222221 11222222332  221   1111110 000 011111  1222222 22223568889999999999999999


Q ss_pred             CeEEEEeCCCCeeeeeec
Q 005277          569 GTIMMWDLASGRCVTPLM  586 (704)
Q Consensus       569 g~I~iwdl~~~~~~~~~~  586 (704)
                      |.|.+-+....++...+.
T Consensus       238 G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  238 GKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             CcEEEEecchhhhhhccC
Confidence            999999988877776665

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.25  E-value=6  Score=46.57  Aligned_cols=153  Identities=12%  Similarity=0.156  Sum_probs=96.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCe-------------eEEEEcC--CCCEEEEEeC----------CCe
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV-------------WDVQFNP--QGHYFASSSH----------DRT  486 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V-------------~~v~~sp--~~~~l~sgs~----------dg~  486 (704)
                      ++..++.++.|+.+.-.|..+++.+..+.. .+.|             ..+.-.|  .+..+++|+.          +|.
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~  337 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV  337 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence            345788888999999999999998877642 2111             0112222  2445666643          688


Q ss_pred             EEEEECCCCceeEEeccC---------C--------CCe-eEEEEcCCCCEEEEEE------------------CCCcEE
Q 005277          487 ARIWSMDRIQPLRIMAGH---------L--------SDV-DCVRWHINCNYIATGS------------------SDKTVR  530 (704)
Q Consensus       487 i~lwd~~~~~~~~~~~~~---------~--------~~V-~~v~~~p~~~~l~tgs------------------~dg~I~  530 (704)
                      |+-+|.++++.+..+..-         .        ..+ ..+++.|....++.+.                  ..++|.
T Consensus       338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv  417 (764)
T TIGR03074       338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV  417 (764)
T ss_pred             EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence            999999999888765421         0        011 2344555544544422                  124577


Q ss_pred             EEeCCCCcEEEEeec-CCC--------CEEEEEEec-CCC---EEEEEeCCCeEEEEeCCCCeeeeee
Q 005277          531 LWDVSSGECVRIFIG-HRS--------MILSLAMSP-DGR---YMASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       531 iwd~~~~~~~~~~~~-h~~--------~i~~l~~sp-dg~---~l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                      -.|..+|+....++. |.+        ...-+.+.. +|+   .++.++.+|.+.++|.++|+.+...
T Consensus       418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            778889998887754 211        111222333 563   7899999999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.19  E-value=4.1  Score=41.23  Aligned_cols=130  Identities=20%  Similarity=0.173  Sum_probs=79.1

Q ss_pred             CeeEEEEcCCCCEEEEEe---CCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEe-CCCCcE-
Q 005277          465 PVWDVQFNPQGHYFASSS---HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD-VSSGEC-  539 (704)
Q Consensus       465 ~V~~v~~sp~~~~l~sgs---~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd-~~~~~~-  539 (704)
                      .+.+.++++++..++...   ....+.++...  ....... ....+..-+|++++...+....+...+++. ..++.. 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999998876665   33445555443  3333322 223778889999977777666666677773 333332 


Q ss_pred             -EEEeecCC-CCEEEEEEecCCCEEEEEe---CCCeEEEEeCC---CC------eeeeeecCCCceeeeeee
Q 005277          540 -VRIFIGHR-SMILSLAMSPDGRYMASGD---EDGTIMMWDLA---SG------RCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       540 -~~~~~~h~-~~i~~l~~spdg~~l~sg~---~dg~I~iwdl~---~~------~~~~~~~~h~~~V~sl~~  597 (704)
                       +..-.... +.|+.+.+||||..++...   .++.|.+=-+.   .+      ..+.........+.++.|
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W  173 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW  173 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence             22211111 2899999999999877654   45777776443   22      111222233467889999

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.11  E-value=4.9  Score=41.65  Aligned_cols=273  Identities=15%  Similarity=0.117  Sum_probs=121.6

Q ss_pred             eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      .+....+..+.|..+..-+|+|. .|.|  +.....+..-..                      ........-.-..++|
T Consensus        13 l~t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~----------------------~~~~~~~~~~~~l~~I   67 (302)
T PF14870_consen   13 LPTDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQP----------------------VSLDLDNPFDYHLNSI   67 (302)
T ss_dssp             -S-SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE---------------------------S-----EEEEE
T ss_pred             cCCCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccc----------------------cccCCCccceeeEEEE
Confidence            34556789999997677777774 4543  333321110000                      0000000001235677


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee---cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eEEecc
Q 005277          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRIMAG  503 (704)
Q Consensus       428 ~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~-~~~~~~  503 (704)
                      .|..+ ..+++ +..+ +.+...+.++.-..+.   .-.+....+....++...+ ++..|.|.. ..+.++. ......
T Consensus        68 ~f~~~-~g~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~-T~DgG~tW~~~~~~  142 (302)
T PF14870_consen   68 SFDGN-EGWIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYR-TTDGGKTWQAVVSE  142 (302)
T ss_dssp             EEETT-EEEEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEE-ESSTTSSEEEEE-S
T ss_pred             EecCC-ceEEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEE-eCCCCCCeeEcccC
Confidence            77643 33444 4445 4455555454433322   1122233444443443333 334444322 2233332 223344


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC-CCeee
Q 005277          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRCV  582 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~-~~~~~  582 (704)
                      ..+.+..+.-.++|.++++++......-||--...-...-......|.+|.|+|++...+++ ..|.|+.=+.. ....-
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w  221 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW  221 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence            55778888889999999998766666678754322222223456789999999998876644 78888887722 11111


Q ss_pred             ----eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277          583 ----TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       583 ----~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~  658 (704)
                          ..+..-.-.+.+++|                                  .+++...++|+. |.+.+ ..+.++  
T Consensus       222 ~~~~~~~~~~~~~~ld~a~----------------------------------~~~~~~wa~gg~-G~l~~-S~DgGk--  263 (302)
T PF14870_consen  222 SEPIIPIKTNGYGILDLAY----------------------------------RPPNEIWAVGGS-GTLLV-STDGGK--  263 (302)
T ss_dssp             ---B-TTSS--S-EEEEEE----------------------------------SSSS-EEEEEST-T-EEE-ESSTTS--
T ss_pred             ccccCCcccCceeeEEEEe----------------------------------cCCCCEEEEeCC-ccEEE-eCCCCc--
Confidence                111112233566677                                  667777776654 43332 223322  


Q ss_pred             cccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          659 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       659 ~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                                .++.........+.++.+.|.+..+-+|.|.
T Consensus       264 ----------tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~  294 (302)
T PF14870_consen  264 ----------TWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ  294 (302)
T ss_dssp             ----------S-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred             ----------cceECccccCCCCceEEEEEcCCCceEEECC
Confidence                      1222223333455689999988888787764

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.01  E-value=0.24  Score=57.86  Aligned_cols=143  Identities=13%  Similarity=0.025  Sum_probs=93.7

Q ss_pred             cCeEEEEEcCCCCEEE--EEeCCCeEEEEeCCCCcee-----EEee------cCCcCeeEEEEcCC-CCEEEEEeCCCeE
Q 005277          422 GPVYSASFSPLGDFIL--SSSADTTIRLWSTKLNANL-----VCYK------GHNYPVWDVQFNPQ-GHYFASSSHDRTA  487 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~--s~s~Dg~I~lwd~~~~~~~-----~~~~------~h~~~V~~v~~sp~-~~~l~sgs~dg~i  487 (704)
                      -++..+...+|+...+  ..+.+-.|..||++....-     .-+.      ....-..++.|+|. -..++.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            4566666677766544  3344457888998754321     1111      12234567889884 3346777889999


Q ss_pred             EEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec----CCCCEEEEEEecCCCEEE
Q 005277          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG----HRSMILSLAMSPDGRYMA  563 (704)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~----h~~~i~~l~~spdg~~l~  563 (704)
                      ++..+....+...--.....++|++|+|.|+.+++|-..|++.-|-. +++..+.+.+    ....|.+++|-..-.+++
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            99887654333222235567899999999999999999999988865 3333333321    146899999988777776


Q ss_pred             EE
Q 005277          564 SG  565 (704)
Q Consensus       564 sg  565 (704)
                      +-
T Consensus       260 vy  261 (1405)
T KOG3630|consen  260 VY  261 (1405)
T ss_pred             Ee
Confidence            53

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.99  E-value=4.8  Score=41.04  Aligned_cols=208  Identities=16%  Similarity=0.122  Sum_probs=114.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE--EcC
Q 005277          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS--FSP  431 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~--~sp  431 (704)
                      |..+...++-+.|++-+ |+.+.++++..............            +  ..............+...+  -..
T Consensus        38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~------------~--~~~~~~~~~~~~~~v~~f~~~~~~  102 (275)
T PF00780_consen   38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF------------P--KSRSLPTKLPETKGVSFFAVNGGH  102 (275)
T ss_pred             EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc------------c--ccccccccccccCCeeEEeecccc
Confidence            88888888877666654 59999999986432221100000            0  0000001111223344433  112


Q ss_pred             CC-CEEEEEeCCCeEEEEeCCCC-----ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC
Q 005277          432 LG-DFILSSSADTTIRLWSTKLN-----ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (704)
Q Consensus       432 ~~-~~l~s~s~Dg~I~lwd~~~~-----~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~  505 (704)
                      .+ ..|+.+. ...|.+|.+...     .....+. -...+.+++|.  ++.++.|.. +...+.|+.++.....+....
T Consensus       103 ~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~  177 (275)
T PF00780_consen  103 EGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSELLDPSD  177 (275)
T ss_pred             ccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCceEEeCccC
Confidence            33 3444444 458999887653     2334444 34678899998  667777765 458888998776655543211


Q ss_pred             ------------CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE--EeecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277          506 ------------SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR--IFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (704)
Q Consensus       506 ------------~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~--~~~~h~~~i~~l~~spdg~~l~sg~~dg~I  571 (704)
                                  .++..+.. +++.+|++-  +..-...|. .|+..+  .+. -...+.++++.  ..+|++.+. +.|
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~-W~~~p~~~~~~--~pyli~~~~-~~i  249 (275)
T PF00780_consen  178 SSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ-WSSAPQSVAYS--SPYLIAFSS-NSI  249 (275)
T ss_pred             CcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEE-cCCchhEEEEE--CCEEEEECC-CEE
Confidence                        22333333 345555543  333333343 444433  121 12355566663  457777666 459


Q ss_pred             EEEeCCCCeeeeeecCCC
Q 005277          572 MMWDLASGRCVTPLMGHT  589 (704)
Q Consensus       572 ~iwdl~~~~~~~~~~~h~  589 (704)
                      .||++.+++.++.+...+
T Consensus       250 EV~~~~~~~lvQ~i~~~~  267 (275)
T PF00780_consen  250 EVRSLETGELVQTIPLPN  267 (275)
T ss_pred             EEEECcCCcEEEEEECCC
Confidence            999999999998887544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.96  E-value=0.084  Score=37.83  Aligned_cols=34  Identities=18%  Similarity=0.209  Sum_probs=29.9

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN  455 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~  455 (704)
                      ...|.+++|+|..++|+.++.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456999999999999999999999999998 4544

>PHA02790 Kelch-like protein; Provisional

Probab=94.94  E-value=1.1  Score=50.16  Aligned_cols=141  Identities=9%  Similarity=-0.041  Sum_probs=66.2

Q ss_pred             CCEEEEEeCC-----CeEEEEeCCCCceeE--EeecCCcCeeEEEEcCCCCEEEEEeCC--CeEEEEECCCCceeEE--e
Q 005277          433 GDFILSSSAD-----TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHD--RTARIWSMDRIQPLRI--M  501 (704)
Q Consensus       433 ~~~l~s~s~D-----g~I~lwd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~sgs~d--g~i~lwd~~~~~~~~~--~  501 (704)
                      +..++.|+.+     .++..||..++.-..  .+.........+.  -++...+.||.+  .++..||..+.+-...  +
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            4445566543     246677776644322  1111111111222  267777888754  3577788765432211  1


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          502 AGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                      .........+.  -+|.+.+.|+.++   .+..||..++.-...-.-....-...+..-+|+..+.|+   .+.+||..+
T Consensus       350 ~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~  424 (480)
T PHA02790        350 LKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESS  424 (480)
T ss_pred             CCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCC
Confidence            11111111222  3577777777553   477888876543221110001011112233566666663   467788765


Q ss_pred             Ce
Q 005277          579 GR  580 (704)
Q Consensus       579 ~~  580 (704)
                      .+
T Consensus       425 ~~  426 (480)
T PHA02790        425 NT  426 (480)
T ss_pred             Cc
Confidence            53

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.80  E-value=1.4  Score=47.41  Aligned_cols=100  Identities=12%  Similarity=0.131  Sum_probs=56.4

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----ceeEE---eec----CCcCeeEEEEcCCCCEEEEEeCC-----
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLN-----ANLVC---YKG----HNYPVWDVQFNPQGHYFASSSHD-----  484 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~-----~~~~~---~~~----h~~~V~~v~~sp~~~~l~sgs~d-----  484 (704)
                      ....++++.+++  |+.++.....++.+....     +....   +..    +......+.|.|+|.+.++-+..     
T Consensus        72 ~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~  149 (367)
T TIGR02604        72 SMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV  149 (367)
T ss_pred             CCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence            345789999888  444555543444455421     11111   221    13447789999999876654421     


Q ss_pred             --------------CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE
Q 005277          485 --------------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS  524 (704)
Q Consensus       485 --------------g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs  524 (704)
                                    |.+.-++.+... ...+.........++|+|+|+++++-.
T Consensus       150 ~~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       150 TRPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ccCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEcc
Confidence                          345555555443 333333334456889999888876643

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.64  E-value=0.035  Score=62.80  Aligned_cols=165  Identities=13%  Similarity=0.156  Sum_probs=103.5

Q ss_pred             eeccCCccCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCC--Cce-----eEEeecCCcCeeEEEEcC---CCCEEEEEeC
Q 005277          415 TLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKL--NAN-----LVCYKGHNYPVWDVQFNP---QGHYFASSSH  483 (704)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~--~~~-----~~~~~~h~~~V~~v~~sp---~~~~l~sgs~  483 (704)
                      ...+|.+|.|-.+.|.... ..+.  -.-|...+|+++-  |+.     +........++.-|.|+|   +..++..+-.
T Consensus       126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~  203 (1283)
T KOG1916|consen  126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK  203 (1283)
T ss_pred             HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence            4566788888888885422 1222  3336788998763  322     222333445567777877   5677888888


Q ss_pred             CCeEEEEECCCCceeEEeccCCCCeeEE-----------EEcCCCCEEEEEECCCcEEEEeCC-----CCcEEEEeecCC
Q 005277          484 DRTARIWSMDRIQPLRIMAGHLSDVDCV-----------RWHINCNYIATGSSDKTVRLWDVS-----SGECVRIFIGHR  547 (704)
Q Consensus       484 dg~i~lwd~~~~~~~~~~~~~~~~V~~v-----------~~~p~~~~l~tgs~dg~I~iwd~~-----~~~~~~~~~~h~  547 (704)
                      ++++++..+++... ..+.+|...+..+           ..+|||..+++++.||.++.|.+.     .-.|+...+.|.
T Consensus       204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence            99999988876433 3444566554443           257999999999999999888764     334556666776


Q ss_pred             C-CEEEEEEecC-------C--CEEEEEe-CCCeEEEEeCCCCeee
Q 005277          548 S-MILSLAMSPD-------G--RYMASGD-EDGTIMMWDLASGRCV  582 (704)
Q Consensus       548 ~-~i~~l~~spd-------g--~~l~sg~-~dg~I~iwdl~~~~~~  582 (704)
                      + +-.|.-|..+       |  .++++++ ....+++|....++|+
T Consensus       283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            3 3333333322       1  2344444 3456889988777665

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.61  E-value=0.32  Score=56.89  Aligned_cols=133  Identities=14%  Similarity=0.089  Sum_probs=85.2

Q ss_pred             CcCeeEEEEcCCCCEEEEE--eCCCeEEEEECCCCceeE-----Eec------cCCCCeeEEEEcCCC-CEEEEEECCCc
Q 005277          463 NYPVWDVQFNPQGHYFASS--SHDRTARIWSMDRIQPLR-----IMA------GHLSDVDCVRWHINC-NYIATGSSDKT  528 (704)
Q Consensus       463 ~~~V~~v~~sp~~~~l~sg--s~dg~i~lwd~~~~~~~~-----~~~------~~~~~V~~v~~~p~~-~~l~tgs~dg~  528 (704)
                      ..++..+...+|+...++.  +.+-.|..||++.....+     -+.      .......++.|+|.- ...++...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            3456667777776654443  344478899987543211     111      122346788999863 34466678999


Q ss_pred             EEEEeCCCCcE-EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC----Cceeeeeee
Q 005277          529 VRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH----TSCVWTLAY  597 (704)
Q Consensus       529 I~iwd~~~~~~-~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h----~~~V~sl~~  597 (704)
                      |++..+..... +..+ ......+|++|+|.|+.++.|...|++.-|-. +++....+.+.    ...|.++.|
T Consensus       180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~W  251 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTW  251 (1405)
T ss_pred             hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEE
Confidence            99987753322 2222 34567899999999999999999999998874 34433333221    356788888

>PHA02790 Kelch-like protein; Provisional

Probab=94.57  E-value=1.5  Score=48.96  Aligned_cols=65  Identities=12%  Similarity=0.028  Sum_probs=34.3

Q ss_pred             CCCCEEEEEECC--CcEEEEeCCCCcEEEEeecCCCCE-EEEEEecCCCEEEEEeCCC---eEEEEeCCCCe
Q 005277          515 INCNYIATGSSD--KTVRLWDVSSGECVRIFIGHRSMI-LSLAMSPDGRYMASGDEDG---TIMMWDLASGR  580 (704)
Q Consensus       515 p~~~~l~tgs~d--g~I~iwd~~~~~~~~~~~~h~~~i-~~l~~spdg~~l~sg~~dg---~I~iwdl~~~~  580 (704)
                      -++...++|+.+  .++..||..+++-.. ...-..+. ......-+|+..+.||.++   .+..||..+.+
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~  387 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ  387 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEE-CCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE
Confidence            366677777753  457888876654322 11111111 1112223677777777553   35667766543

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.56  E-value=0.26  Score=50.63  Aligned_cols=148  Identities=17%  Similarity=0.189  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCCCCCCCC-CchhhhccccccccccCChhhHHHHHHHHHHHHhhcc
Q 005277            4 LQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDIL-NDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSL   82 (704)
Q Consensus         4 ~~~~~~v~~yl~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l   82 (704)
                      ..++++|.+||-+.||.+|-..|-++++..+-..    ..++ +--.|.+.|.            ...+.-...|+...=
T Consensus       116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD----~Dv~~~~~~I~~sll------------~~~l~~~Lswc~ehk  179 (389)
T KOG0396|consen  116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVD----SDVYKRAYGIRDSLL------------AGELEPALSWCKEHK  179 (389)
T ss_pred             HHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHh----HHHHHHHHHHHHHHH------------hcchHHHHHHHHHHH
Confidence            4689999999999999999999998887643210    0000 0001222221            122445677887765


Q ss_pred             ccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChhhhccCHHHHHhh-cCceEEE
Q 005277           83 DLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLR-HSKVNIK  161 (704)
Q Consensus        83 d~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~  161 (704)
                      -..|.+=+.|=|-+=..=|++||.-+...+|.+|++||=.-+...|..+|+.+.+...-         ..|- ..||..-
T Consensus       180 ~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF---------~~~t~~sky~~l  250 (389)
T KOG0396|consen  180 VELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAF---------PKYTSSSKYLNL  250 (389)
T ss_pred             HHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcC---------ccccCcccccCc
Confidence            55555556677888889999999999999999999999999988999999987664321         0111 3557777


Q ss_pred             EchhhHHHHH-HHHhh
Q 005277          162 ICQYSYELLL-QYLHK  176 (704)
Q Consensus       162 ~~~~~~~~l~-~~l~~  176 (704)
                      ++..-++-|- .|+++
T Consensus       251 ~~~~rw~~l~~lF~s~  266 (389)
T KOG0396|consen  251 LTADRWSVLADLFLSE  266 (389)
T ss_pred             ccHHHHHHHHHHhhHH
Confidence            7777777665 35543

>PRK13684 Ycf48-like protein; Provisional

Probab=94.51  E-value=4.1  Score=43.13  Aligned_cols=114  Identities=18%  Similarity=0.177  Sum_probs=66.0

Q ss_pred             CcCeeEEEEcCCCCEEEEEeCCCeEEE-EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 005277          463 NYPVWDVQFNPQGHYFASSSHDRTARI-WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR  541 (704)
Q Consensus       463 ~~~V~~v~~sp~~~~l~sgs~dg~i~l-wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~  541 (704)
                      ...+.++.+.|++.+++++. .|.+.. ++-....-..........+.++.+.+++..+++| ..|.+++=....|..-.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS  249 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence            45688999999987776664 454433 2222111222223445678999999999887776 45766533344444322


Q ss_pred             Eeec----CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          542 IFIG----HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       542 ~~~~----h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      ....    ....+..+.+.|++..+++ +.+|.|. .....++
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~  290 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGK  290 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCC
Confidence            2211    1235788999998876554 4567554 3444443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.49  E-value=2.5  Score=41.16  Aligned_cols=131  Identities=11%  Similarity=0.063  Sum_probs=81.5

Q ss_pred             eEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEE-EEeCCCeEEEEE--
Q 005277          424 VYSASFSPLGDFILSSSAD---------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRTARIWS--  491 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~D---------g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-sgs~dg~i~lwd--  491 (704)
                      .+.-..+|+|++..-.-.|         |.++.|-.  +..+..+...-.--..++|+.+.+.|. +-+.+-+|.-||  
T Consensus       111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd  188 (310)
T KOG4499|consen  111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD  188 (310)
T ss_pred             cccCccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence            3444567888874422222         33444433  223333333333445788887766554 456677787787  


Q ss_pred             CCCCc-----eeEEecc----CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEe
Q 005277          492 MDRIQ-----PLRIMAG----HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS  556 (704)
Q Consensus       492 ~~~~~-----~~~~~~~----~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~s  556 (704)
                      +.++.     .+..+..    ..-.-..++...+|++.++.-..++|...|..+|+.+..+.-....|+|++|-
T Consensus       189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            43332     2222221    11112345556688888888889999999999999999998889999999995

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.40  E-value=8  Score=40.86  Aligned_cols=100  Identities=9%  Similarity=0.119  Sum_probs=53.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEe----ecCCcCeeEEEEcCC----CCEEEEEeCC--------
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCY----KGHNYPVWDVQFNPQ----GHYFASSSHD--------  484 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~---~~~~----~~h~~~V~~v~~sp~----~~~l~sgs~d--------  484 (704)
                      -.+|+|.|+++.+++ ...|.|++++. .+..   +...    .........++++|+    +...++.+..        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            478999999886664 56999999993 3333   2222    123456789999994    3333333321        


Q ss_pred             CeEEEEECCCC-------cee-EEecc---CCCCeeEEEEcCCCCEEEEEEC
Q 005277          485 RTARIWSMDRI-------QPL-RIMAG---HLSDVDCVRWHINCNYIATGSS  525 (704)
Q Consensus       485 g~i~lwd~~~~-------~~~-~~~~~---~~~~V~~v~~~p~~~~l~tgs~  525 (704)
                      ..|.-|.....       +.+ .....   ....-..+.|.|+|.+.++.+.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence            23444444332       111 11122   2234567999999976666543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.38  E-value=1.9  Score=46.38  Aligned_cols=142  Identities=12%  Similarity=0.121  Sum_probs=92.0

Q ss_pred             CCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC-------EEEEEeCCCeEEEEECCC-CceeEEec
Q 005277          432 LGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-------YFASSSHDRTARIWSMDR-IQPLRIMA  502 (704)
Q Consensus       432 ~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-------~l~sgs~dg~i~lwd~~~-~~~~~~~~  502 (704)
                      +..+|+ .|.....++-.|++.|+.+....-|..-  -+.|.|...       .-++|-.+..|.-.|.+- +..+....
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            344444 5566667777888889888888877654  477877432       234455566666666543 22222211


Q ss_pred             ----cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277          503 ----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       503 ----~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~  577 (704)
                          .......|..- ....|+|+|+..|.|++||--..+....+.+-...|..+..+.+|+++++.+. ..+.+-|++
T Consensus       556 sKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         556 SKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             ehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence                11122333322 24569999999999999996544444456677788999999999999887765 467777765

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.33  E-value=2.4  Score=48.56  Aligned_cols=173  Identities=16%  Similarity=0.172  Sum_probs=98.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      .+.++|+.  . ..+|+++. .+.|.||+.+......... +.......+ ........  ........|+  |+.|...
T Consensus        40 KNNLtals--q-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~-p~~~~~t~p-~~~~~~D~--~~s~~p~PHt--IN~i~v~  109 (717)
T PF08728_consen   40 KNNLTALS--Q-RNLLFIAY-QSEIYVYDPDGLTQLPSRK-PCLRFDTKP-EFTSTPDR--LISTWPFPHT--INFIKVG  109 (717)
T ss_pred             ccceeEEe--c-CCEEEEEE-CCEEEEEecCCcccccccc-cccccccCc-cccccccc--cccCCCCCce--eeEEEec
Confidence            34444443  2 66777764 7899999987643321100 000000000 00000000  0001113343  4444433


Q ss_pred             --CCCCEEEEEeCCCeEEEEeCCC-------C----c---------eeEEeecCCcCeeEEEEc--CCCCEEEEEeCCCe
Q 005277          431 --PLGDFILSSSADTTIRLWSTKL-------N----A---------NLVCYKGHNYPVWDVQFN--PQGHYFASSSHDRT  486 (704)
Q Consensus       431 --p~~~~l~s~s~Dg~I~lwd~~~-------~----~---------~~~~~~~h~~~V~~v~~s--p~~~~l~sgs~dg~  486 (704)
                        -....|+.|..||.|.+|.+++       .    .         +...++ -...+|+++++  ...+++|+++....
T Consensus       110 ~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~  188 (717)
T PF08728_consen  110 DLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQE  188 (717)
T ss_pred             ccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCce
Confidence              3456889999999999997531       0    0         111122 24579999999  78889999998898


Q ss_pred             EEEEECCCC--c-eeEEeccCCCCeeEEEEcCCC---C---EEEEEECCCcEEEEeC
Q 005277          487 ARIWSMDRI--Q-PLRIMAGHLSDVDCVRWHINC---N---YIATGSSDKTVRLWDV  534 (704)
Q Consensus       487 i~lwd~~~~--~-~~~~~~~~~~~V~~v~~~p~~---~---~l~tgs~dg~I~iwd~  534 (704)
                      |.||-....  + ....-..+...|-+|+|-++.   .   +|++++-.|.+.+|++
T Consensus       189 VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  189 VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            988866432  1 111111356678999997643   2   7888889999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.29  E-value=7.7  Score=40.20  Aligned_cols=229  Identities=12%  Similarity=0.119  Sum_probs=107.2

Q ss_pred             CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe--ecC---CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY--KGH---NYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~--~~h---~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~  494 (704)
                      -..++.+|.|..+..-+++|. .++| +-..+.++.=...  ...   .....+|.|..+ ..+++| ..+ +.+...+.
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~Dg   89 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDG   89 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESST
T ss_pred             CCCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCC
Confidence            345899999995555555554 4544 2233323221111  111   234667888643 344444 444 44444554


Q ss_pred             CceeEEec---cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEE-EEeecCCCCEEEEEEecCCCEEEEEeCCCe
Q 005277          495 IQPLRIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV-RIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (704)
Q Consensus       495 ~~~~~~~~---~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~-~~~~~h~~~i~~l~~spdg~~l~sg~~dg~  570 (704)
                      ++.-..+.   .-......+....++..+++ +..|.|+.= ...|+.- .......+.+..+..++||++++++.....
T Consensus        90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~  167 (302)
T PF14870_consen   90 GKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF  167 (302)
T ss_dssp             TSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred             CCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence            44333221   11223333443344433333 344544332 2233322 223345577899999999999998877666


Q ss_pred             EEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEE
Q 005277          571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLW  650 (704)
Q Consensus       571 I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iW  650 (704)
                      ..-||-....-...-+.-...|.+|.|                                  ++++.+.+.+ ..|.|++=
T Consensus       168 ~~s~~~G~~~w~~~~r~~~~riq~~gf----------------------------------~~~~~lw~~~-~Gg~~~~s  212 (302)
T PF14870_consen  168 YSSWDPGQTTWQPHNRNSSRRIQSMGF----------------------------------SPDGNLWMLA-RGGQIQFS  212 (302)
T ss_dssp             EEEE-TT-SS-EEEE--SSS-EEEEEE-----------------------------------TTS-EEEEE-TTTEEEEE
T ss_pred             EEEecCCCccceEEccCccceehhcee----------------------------------cCCCCEEEEe-CCcEEEEc
Confidence            778886533222333334578899998                                  8888776655 77888887


Q ss_pred             eCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277          651 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       651 d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~  700 (704)
                      +.........          ..+.......-.+..++|.+++.+.|+|+.
T Consensus       213 ~~~~~~~~w~----------~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~  252 (302)
T PF14870_consen  213 DDPDDGETWS----------EPIIPIKTNGYGILDLAYRPPNEIWAVGGS  252 (302)
T ss_dssp             E-TTEEEEE-------------B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred             cCCCCccccc----------cccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence            7222111100          112223334455899999999998888765

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.27  E-value=5.6  Score=46.42  Aligned_cols=29  Identities=17%  Similarity=0.357  Sum_probs=21.8

Q ss_pred             CcCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005277          463 NYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (704)
Q Consensus       463 ~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~  492 (704)
                      ...|..|.++|+|++++..|..|. .|..+
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~L  112 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGV-VVLEL  112 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcE-EEEEe
Confidence            456889999999999999887554 44433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.09  E-value=2.7  Score=45.21  Aligned_cols=141  Identities=9%  Similarity=0.082  Sum_probs=79.4

Q ss_pred             CeEEEEEcCCCCEEEEEe-----------CCC-eEEEEeCCC--Cc--eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe
Q 005277          423 PVYSASFSPLGDFILSSS-----------ADT-TIRLWSTKL--NA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s-----------~Dg-~I~lwd~~~--~~--~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~  486 (704)
                      ....|+|.++|+++++..           ..+ .|.+++-..  +.  ....+-..-.....+++.++| .++ ++....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence            456889999999776643           223 677775432  22  223443334456789999888 444 444443


Q ss_pred             EEEEECCCC-----ceeEE---ecc----CCCCeeEEEEcCCCCEEEEEECC-------------------CcEEEEeCC
Q 005277          487 ARIWSMDRI-----QPLRI---MAG----HLSDVDCVRWHINCNYIATGSSD-------------------KTVRLWDVS  535 (704)
Q Consensus       487 i~lwd~~~~-----~~~~~---~~~----~~~~V~~v~~~p~~~~l~tgs~d-------------------g~I~iwd~~  535 (704)
                      .++.|.+..     +....   +..    +......++|.|+|.+.++-+..                   |.|.-+|..
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            344455321     22112   211    12346789999999876654421                   445555655


Q ss_pred             CCcEEEEeecCCCCEEEEEEecCCCEEEEEe
Q 005277          536 SGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       536 ~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~  566 (704)
                      +++....-.++ .....++|+|+|+++++-.
T Consensus       173 g~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       173 GGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence            44432222233 3356899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.09  E-value=7.8  Score=39.54  Aligned_cols=221  Identities=17%  Similarity=0.247  Sum_probs=121.2

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc-----CCccCeEEEEE
Q 005277          355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-----GHSGPVYSASF  429 (704)
Q Consensus       355 ~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~V~~l~~  429 (704)
                      ..++|+|.+.+-++....+...+||...........                     .......     .-.+..+.+.|
T Consensus        26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~---------------------~L~vtiP~~~~~~~~~~PTGiVf   84 (336)
T TIGR03118        26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQD---------------------PLVVVIPAPPPLAAEGTPTGQVF   84 (336)
T ss_pred             ceeEecCCCCEEEecCCcceEEeecCCcccccCCcc---------------------ceEEEecCCCCCCCCCCccEEEE
Confidence            568999999888888888999999987311100000                     0000000     01233455555


Q ss_pred             cCCCC------------EEEEEeCCCeEEEEeCCCCce-----eEEee-cCCcCe-eEEEEcC--CCCEEEEE-eCCCeE
Q 005277          430 SPLGD------------FILSSSADTTIRLWSTKLNAN-----LVCYK-GHNYPV-WDVQFNP--QGHYFASS-SHDRTA  487 (704)
Q Consensus       430 sp~~~------------~l~s~s~Dg~I~lwd~~~~~~-----~~~~~-~h~~~V-~~v~~sp--~~~~l~sg-s~dg~i  487 (704)
                      +....            .++.+++||+|.-|.......     ...+. +....| ..+++..  .+.+|..+ -..++|
T Consensus        85 N~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~I  164 (336)
T TIGR03118        85 NGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRI  164 (336)
T ss_pred             eCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCce
Confidence            53222            367789999999998532221     22222 112233 3445443  34555444 367888


Q ss_pred             EEEECCCCcee--EEecc-----CCCC--eeE------EEE---cCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cCC
Q 005277          488 RIWSMDRIQPL--RIMAG-----HLSD--VDC------VRW---HINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHR  547 (704)
Q Consensus       488 ~lwd~~~~~~~--~~~~~-----~~~~--V~~------v~~---~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~  547 (704)
                      .++|-.-....  ..+..     .-.+  |..      |.|   .++.+.=+.|..-|.|-+||. .|+.++.+.  +.-
T Consensus       165 DVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~L  243 (336)
T TIGR03118       165 DVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRL  243 (336)
T ss_pred             EEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcc
Confidence            88876432211  00110     0000  111      111   122222223344578999997 677777773  222


Q ss_pred             CCEEEEEEec------CCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCc------eeeeeee
Q 005277          548 SMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS------CVWTLAY  597 (704)
Q Consensus       548 ~~i~~l~~sp------dg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~------~V~sl~~  597 (704)
                      .....|+..|      .|.+|+--..||+|..+|..+++.+-.+....+      .+|.+.|
T Consensus       244 NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~f  305 (336)
T TIGR03118       244 NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTF  305 (336)
T ss_pred             cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeee
Confidence            3455677766      577888888899999999999988877765432      3455555

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK13684 Ycf48-like protein; Provisional

Probab=93.79  E-value=11  Score=40.01  Aligned_cols=144  Identities=17%  Similarity=0.169  Sum_probs=77.9

Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEE-EeCCCCcEE-EEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277          505 LSDVDCVRWHINCNYIATGSSDKTVRL-WDVSSGECV-RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~I~i-wd~~~~~~~-~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~  582 (704)
                      ...+.++.+.|++.++++|. .|.+.. +| ..++.- .....-...++++.+.++++.+++| ..|.+.+=....|..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            45688899999987776664 554443 22 122222 2222344678999999999877665 4576653223333322


Q ss_pred             eeecCC----CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277          583 TPLMGH----TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       583 ~~~~~h----~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~  658 (704)
                      .....+    ...+.++.+                                  .+++..+++| .+|.|. .....+.. 
T Consensus       249 ~~~~~~~~~~~~~l~~v~~----------------------------------~~~~~~~~~G-~~G~v~-~S~d~G~t-  291 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAY----------------------------------RTPGEIWAGG-GNGTLL-VSKDGGKT-  291 (334)
T ss_pred             ccccCCccccccceeeEEE----------------------------------cCCCCEEEEc-CCCeEE-EeCCCCCC-
Confidence            211111    123455555                                  6666655544 566554 33333221 


Q ss_pred             cccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          659 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       659 ~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                                 +..+..........+.+.|..++..+++|.
T Consensus       292 -----------W~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  321 (334)
T PRK13684        292 -----------WEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ  321 (334)
T ss_pred             -----------CeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence                       111211112234688888888888888765

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=93.75  E-value=0.18  Score=48.92  Aligned_cols=169  Identities=14%  Similarity=0.215  Sum_probs=103.0

Q ss_pred             chHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCCCCCCCCCch-hhhccccccccccCChhhHHHHHHHHHHHHhh
Q 005277            2 DELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDP-ELSKFFRTFSESEDGPARYQDEYSKLRSWTYS   80 (704)
Q Consensus         2 ~~~~~~~~v~~yl~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   80 (704)
                      ..+|++++|++||---||.++-+.|..|+....+.-....   +.+- .|...+     .   -.+...|..++.+--=.
T Consensus        25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~---~~eR~~Ir~~I-----~---~G~Ie~Aie~in~l~Pe   93 (228)
T KOG2659|consen   25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDS---MDERLQIRRAI-----E---EGQIEEAIEKVNQLNPE   93 (228)
T ss_pred             chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhh---HhHHHHHHHHH-----H---hccHHHHHHHHHHhChH
Confidence            5689999999999999999999999999887653111100   0000 111111     1   11234455555433322


Q ss_pred             ccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHH---hhhHHHHHHHhcCCChhhhccCHHHHHhhcCc
Q 005277           81 SLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHE---MMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSK  157 (704)
Q Consensus        81 ~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  157 (704)
                      -||.-+    .|+|=+-..-+++||..|..++|-+|+..--.-+.   ..+.+.+++.-.+.--+.-+..|.+. +-+..
T Consensus        94 iLd~n~----~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~-l~~~s  168 (228)
T KOG2659|consen   94 ILDTNR----ELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAE-LLSQS  168 (228)
T ss_pred             HHccch----hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHH-HHHHH
Confidence            222222    26777777788999999999999999988655542   13556666533332222223344444 45566


Q ss_pred             eEEEEchhhHHHHHHHHhhcCcchHHHhh
Q 005277          158 VNIKICQYSYELLLQYLHKTQSTKMLGII  186 (704)
Q Consensus       158 ~~~~~~~~~~~~l~~~l~~~~~~~~~~i~  186 (704)
                      |+-++....-.-++.+.+......|..|+
T Consensus       169 ~R~kvA~~vN~aiL~~~~~~~~~~l~~ll  197 (228)
T KOG2659|consen  169 LRQKVASEVNSAILASQEHESEPKLPFLL  197 (228)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence            67777777777777777766556666666

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.69  E-value=12  Score=40.52  Aligned_cols=187  Identities=14%  Similarity=0.111  Sum_probs=102.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------
Q 005277          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI------------------  495 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~------------------  495 (704)
                      .+++.-+.||++.+++-+.......+.+ ---.-.+.+++.-..|++++.+..+.-|.....                  
T Consensus       146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~  224 (418)
T PF14727_consen  146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDIS  224 (418)
T ss_pred             eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccccc
Confidence            4677889999999999875544443433 222234778888889999998888888864210                  


Q ss_pred             --c---eeEEeccC--CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEE-Eec----CC---C
Q 005277          496 --Q---PLRIMAGH--LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA-MSP----DG---R  560 (704)
Q Consensus       496 --~---~~~~~~~~--~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~-~sp----dg---~  560 (704)
                        +   +-..+.-.  --+|..+.++.+...+++-+ ..++.+.+- +|.. +..+.......|++ |..    ++   .
T Consensus       225 ~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~G~l-~~~krLd~~p~~~~~Y~~~~~~~~~~~~  301 (418)
T PF14727_consen  225 SGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-NGSL-RFQKRLDYNPSCFCPYRVPWYNEPSTRL  301 (418)
T ss_pred             ccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-CCeE-EEEEecCCceeeEEEEEeecccCCCCce
Confidence              0   11111111  11233444443444444443 345555554 4533 33333333333332 211    22   2


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE
Q 005277          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS  640 (704)
Q Consensus       561 ~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las  640 (704)
                      .++.++.++.+.||.=.  +.+-.-+....+| ++..                               +.+..-...|++
T Consensus       302 ~llV~t~t~~LlVy~d~--~L~WsA~l~~~PV-al~v-------------------------------~~~~~~~G~IV~  347 (418)
T PF14727_consen  302 NLLVGTHTGTLLVYEDT--TLVWSAQLPHVPV-ALSV-------------------------------ANFNGLKGLIVS  347 (418)
T ss_pred             EEEEEecCCeEEEEeCC--eEEEecCCCCCCE-EEEe-------------------------------cccCCCCceEEE
Confidence            58889999999998632  2222222122222 2211                               111333568889


Q ss_pred             EeCCCcEEEEeCCCCccc
Q 005277          641 GSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       641 gs~Dg~V~iWd~~~~~~~  658 (704)
                      -+.+|.+.+-=+-+....
T Consensus       348 Ls~~G~L~v~YLGTdPs~  365 (418)
T PF14727_consen  348 LSDEGQLSVSYLGTDPSL  365 (418)
T ss_pred             EcCCCcEEEEEeCCCCcc
Confidence            999999999888775543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.48  E-value=10  Score=38.77  Aligned_cols=205  Identities=16%  Similarity=0.219  Sum_probs=114.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCC------CC-ceeEEeec-----CCcCeeEEEEcCCCC------------EEE
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTK------LN-ANLVCYKG-----HNYPVWDVQFNPQGH------------YFA  479 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~------~~-~~~~~~~~-----h~~~V~~v~~sp~~~------------~l~  479 (704)
                      -..|+++|.+.+-++....+...+||..      .. ..+..+..     .....+.+.|+....            .|+
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4689999999888888888999999986      22 22334432     124567787775322            367


Q ss_pred             EEeCCCeEEEEECCCCce-----eEEec-cCCCCe-eEEEEcCC--CCEEEEE-ECCCcEEEEeCCCCcEEEE---eecC
Q 005277          480 SSSHDRTARIWSMDRIQP-----LRIMA-GHLSDV-DCVRWHIN--CNYIATG-SSDKTVRLWDVSSGECVRI---FIGH  546 (704)
Q Consensus       480 sgs~dg~i~lwd~~~~~~-----~~~~~-~~~~~V-~~v~~~p~--~~~l~tg-s~dg~I~iwd~~~~~~~~~---~~~h  546 (704)
                      .++.||+|.-|...-...     ...+. .....| ..+++...  +++|..+ -..++|.+||-.=.+ +..   |...
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~-~~~~g~F~DP  183 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP-PPLPGSFIDP  183 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc-ccCCCCccCC
Confidence            888999999998532211     12222 111222 34555433  5566554 367889999853222 111   1100


Q ss_pred             ----------------CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC--CCceeeeeeeeeeehcccccc
Q 005277          547 ----------------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--HTSCVWTLAYRFLLLVTNAYL  608 (704)
Q Consensus       547 ----------------~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~--h~~~V~sl~~~~~~~~~~~~~  608 (704)
                                      .-.|+-..-.++++.=+.|..-|.|-+||+ .|+.++++..  .-..-|.|+..+         
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~AP---------  253 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAP---------  253 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeCh---------
Confidence                            001111111222222233445578999996 5677776631  112233333210         


Q ss_pred             ccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277          609 KISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~  658 (704)
                                         ..+=...+.+|+---.||+|..+|..++.-+
T Consensus       254 -------------------a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~  284 (336)
T TIGR03118       254 -------------------ESFGSLSGALLVGNFGDGTINAYDPQSGAQL  284 (336)
T ss_pred             -------------------hhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence                               0011456777877778999999999887654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.35  E-value=0.94  Score=49.73  Aligned_cols=117  Identities=14%  Similarity=0.236  Sum_probs=75.0

Q ss_pred             CCccCeEEEEEcCCC----CEEEEEeCCCeEEEEeCCC-----CceeEEeecC---CcC--eeEEEEcCCCCEEEEEeCC
Q 005277          419 GHSGPVYSASFSPLG----DFILSSSADTTIRLWSTKL-----NANLVCYKGH---NYP--VWDVQFNPQGHYFASSSHD  484 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~----~~l~s~s~Dg~I~lwd~~~-----~~~~~~~~~h---~~~--V~~v~~sp~~~~l~sgs~d  484 (704)
                      |.-..|.++.|.|-+    ..|+.......|.+|.+..     ++.+.....+   ..+  -..+.|+|....+++-...
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            344569999999963    3566666678999998762     2222222211   112  2457899999888887766


Q ss_pred             CeEEEEECCCCc-eeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCC
Q 005277          485 RTARIWSMDRIQ-PLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS  535 (704)
Q Consensus       485 g~i~lwd~~~~~-~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~  535 (704)
                      ..-.++++.... .+..--...+-|.|.+|.+||+.|+++- +.=.-++||-.
T Consensus       134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            665666664322 2222224567899999999999887753 23346788854

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.25  E-value=0.19  Score=57.23  Aligned_cols=31  Identities=6%  Similarity=0.229  Sum_probs=21.7

Q ss_pred             CCEEEEEEcC---CCCEEEEEeCCCcEEEEEccc
Q 005277          352 NGLNCASISQ---DGSLVAGGFSDSSLKVWDMAK  382 (704)
Q Consensus       352 ~~V~~~~fs~---dg~~lasg~~dg~I~iwdl~~  382 (704)
                      ..+.-+.|.|   +.-++..|-.+|.|++.+++.
T Consensus       181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r  214 (1283)
T KOG1916|consen  181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR  214 (1283)
T ss_pred             CCcceeeecccccccceeeeccCCCceeEeeech
Confidence            3344455544   667888888899999888764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.07  E-value=1.9  Score=48.96  Aligned_cols=113  Identities=10%  Similarity=0.108  Sum_probs=72.5

Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec-CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY  627 (704)
Q Consensus       549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~-~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (704)
                      .++-+.-|.-++.-++-+....+.|||.+.+.....-. ...+.|.+++|..                            
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWts----------------------------   82 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTS----------------------------   82 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeee----------------------------
Confidence            34445555556655555556689999999887544332 4578899999943                            


Q ss_pred             ecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcccccccccc--CC-CCcCeEEEEEccCCcEEEEee
Q 005277          628 FGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL--PT-KSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       628 ~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~~V~~l~fs~~g~~La~gs  699 (704)
                          .|+|+.+.+.|-.+.|.++--....-.      .....+..+..+  .. ...+|.+..|.++|.++++++
T Consensus        83 ----t~d~qsiLaVGf~~~v~l~~Q~R~dy~------~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG  147 (631)
T PF12234_consen   83 ----TPDGQSILAVGFPHHVLLYTQLRYDYT------NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG  147 (631)
T ss_pred             ----cCCCCEEEEEEcCcEEEEEEccchhhh------cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC
Confidence                789999999999999999865321111      001111222221  12 235899999999998877654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.93  E-value=2.9  Score=47.47  Aligned_cols=110  Identities=12%  Similarity=0.056  Sum_probs=73.4

Q ss_pred             CeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCeeEEEEc--CCCCEEEEEECCCcEEEEeCC-----C
Q 005277          465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWH--INCNYIATGSSDKTVRLWDVS-----S  536 (704)
Q Consensus       465 ~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~-~~~~~V~~v~~~--p~~~~l~tgs~dg~I~iwd~~-----~  536 (704)
                      .+.-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|..+.|.  |+++.+++.+-.+.|.+|.-.     .
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            34445555556555555566789999998876433222 346789999987  688888888889999888531     1


Q ss_pred             ----CcEEEEe--ecCC-CCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          537 ----GECVRIF--IGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       537 ----~~~~~~~--~~h~-~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                          -..++.+  ..|+ .+|.+..|.++|..++.+|  +.+.|+|-
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence                1223322  2333 5799999999997665543  46888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PLN02153 epithiospecifier protein

Probab=92.74  E-value=15  Score=38.85  Aligned_cols=64  Identities=6%  Similarity=0.097  Sum_probs=32.7

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCceeEE--ecc---CCCC-eeEEEEcCCCCEEEEEECC-----------CcEEE
Q 005277          474 QGHYFASSSHD-----RTARIWSMDRIQPLRI--MAG---HLSD-VDCVRWHINCNYIATGSSD-----------KTVRL  531 (704)
Q Consensus       474 ~~~~l~sgs~d-----g~i~lwd~~~~~~~~~--~~~---~~~~-V~~v~~~p~~~~l~tgs~d-----------g~I~i  531 (704)
                      ++++++.|+.+     ..+.+||..+.+-...  +..   .... -.+++. -++++++.|+.+           ..+.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence            56677777643     3577788776433221  100   0011 112222 345666666643           24778


Q ss_pred             EeCCCCc
Q 005277          532 WDVSSGE  538 (704)
Q Consensus       532 wd~~~~~  538 (704)
                      ||..+..
T Consensus       164 yd~~~~~  170 (341)
T PLN02153        164 YNIADGK  170 (341)
T ss_pred             EECCCCe
Confidence            8887654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.53  E-value=4.5  Score=46.47  Aligned_cols=142  Identities=10%  Similarity=0.116  Sum_probs=91.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeE------Eee----------------cCCcCeeEEEEcC--CCCEEEEEeCCCeEE
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLV------CYK----------------GHNYPVWDVQFNP--QGHYFASSSHDRTAR  488 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~------~~~----------------~h~~~V~~v~~sp--~~~~l~sgs~dg~i~  488 (704)
                      ..+|+.|. .+.|.||+.+.-....      .+.                .....|.-|....  +...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            56677766 5689999976432211      110                0112344444433  456788899999999


Q ss_pred             EEECCC-------C-------------ceeEEeccCCCCeeEEEEc--CCCCEEEEEECCCcEEEEeCCCC--cE-EEEe
Q 005277          489 IWSMDR-------I-------------QPLRIMAGHLSDVDCVRWH--INCNYIATGSSDKTVRLWDVSSG--EC-VRIF  543 (704)
Q Consensus       489 lwd~~~-------~-------------~~~~~~~~~~~~V~~v~~~--p~~~~l~tgs~dg~I~iwd~~~~--~~-~~~~  543 (704)
                      +|.+++       .             +|...+. -...++++++|  ...++||+++....|.||-+...  +. ...-
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            997632       0             1112222 33578899999  88899999999998988865432  11 1111


Q ss_pred             ecCCCCEEEEEEecCC---C---EEEEEeCCCeEEEEeC
Q 005277          544 IGHRSMILSLAMSPDG---R---YMASGDEDGTIMMWDL  576 (704)
Q Consensus       544 ~~h~~~i~~l~~spdg---~---~l~sg~~dg~I~iwdl  576 (704)
                      ..|...|.+|+|-++.   .   +|++++-.|.+.+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            1356678899998743   2   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.31  E-value=8.2  Score=37.41  Aligned_cols=138  Identities=14%  Similarity=0.249  Sum_probs=80.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCC--ceeEEeecCCcCeeEEEEcCCCCEEEEEeCC---C---eEEEE-ECC----CCceeE-
Q 005277          434 DFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHD---R---TARIW-SMD----RIQPLR-  499 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d---g---~i~lw-d~~----~~~~~~-  499 (704)
                      +.|+.+...+.|.+|++...  .....+.. -+.|..+.++..|+|++|--.+   .   .+|+| +++    ..++++ 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            45555466678999999833  34455553 4789999999999999986322   2   56665 222    123333 


Q ss_pred             EeccC---------------------CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE-E-----EEee----cC--
Q 005277          500 IMAGH---------------------LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-V-----RIFI----GH--  546 (704)
Q Consensus       500 ~~~~~---------------------~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~-----~~~~----~h--  546 (704)
                      .+.||                     ..++.|++..|...-|++|+ ++++.+|.+..+.. .     ..|.    .|  
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~  186 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID  186 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence            22222                     23567888888655566664 56788998764332 1     1111    11  


Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          547 RSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       547 ~~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                      +-.+..+++  .+.|+|..+. -.+++..+
T Consensus       187 ~~~p~~v~i--c~~yiA~~s~-~ev~Vlkl  213 (215)
T PF14761_consen  187 NFKPTQVAI--CEGYIAVMSD-LEVLVLKL  213 (215)
T ss_pred             CceEEEEEE--EeeEEEEecC-CEEEEEEE
Confidence            112444555  3667776654 35666554

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=91.87  E-value=25  Score=39.28  Aligned_cols=117  Identities=17%  Similarity=0.109  Sum_probs=66.9

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC---CeeEEEEcCCCCEEEEEEC-------------CCcEEEE
Q 005277          469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS---DVDCVRWHINCNYIATGSS-------------DKTVRLW  532 (704)
Q Consensus       469 v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~---~V~~v~~~p~~~~l~tgs~-------------dg~I~iw  532 (704)
                      +...++|.+++..+  +.+..+|+. ++.+..+.....   .-..+..-|+|++|+.+..             .-.|..+
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            67778898776655  788888885 445444432221   1245667799999998872             1236667


Q ss_pred             eCCCCcEEEEee--cC----C---------------------CCEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277          533 DVSSGECVRIFI--GH----R---------------------SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP  584 (704)
Q Consensus       533 d~~~~~~~~~~~--~h----~---------------------~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~~~~~~  584 (704)
                      | .+|+.+..+.  .|    .                     --+.++.+.+ ++.+|+++-.-..|...|.++++....
T Consensus       230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI  308 (477)
T ss_dssp             --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred             C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence            7 7787776532  11    0                     1378999999 666666666666899999899988877


Q ss_pred             ecCCC
Q 005277          585 LMGHT  589 (704)
Q Consensus       585 ~~~h~  589 (704)
                      +..|.
T Consensus       309 lg~~~  313 (477)
T PF05935_consen  309 LGPPG  313 (477)
T ss_dssp             ES-ST
T ss_pred             eCCCC
Confidence            76665

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.54  E-value=7.8  Score=47.09  Aligned_cols=32  Identities=13%  Similarity=0.203  Sum_probs=26.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAK  382 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~  382 (704)
                      ......++|+|...++|.|+.+|.|+++....
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEecccc
Confidence            34556788999999999999999999997543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.31  E-value=4.9  Score=42.84  Aligned_cols=116  Identities=12%  Similarity=0.164  Sum_probs=78.1

Q ss_pred             CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE----EeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-
Q 005277          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV----CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-  494 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~----~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-  494 (704)
                      ..|+|.++.||+|++.|+.--.+++|.+++....+...    ..+..+..|....|+.+ .-+|..+..| +-+|.+.. 
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            45799999999999999999999999999985433322    22334556888999855 4566555444 55665543 


Q ss_pred             CceeEEeccCCCCeeEEEEcCCCCEEEEEE--CCCcEEEEeCCCC
Q 005277          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGS--SDKTVRLWDVSSG  537 (704)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs--~dg~I~iwd~~~~  537 (704)
                      .+.++....|...|.-..|+++.+.+.-++  ..+++.=+.++++
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            345666677888899999999877655443  3344434444433

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=91.24  E-value=23  Score=37.61  Aligned_cols=17  Identities=18%  Similarity=0.188  Sum_probs=12.5

Q ss_pred             EEEccCCcEEEEeecCC
Q 005277          686 LQFSRRNLLFAAGALSK  702 (704)
Q Consensus       686 l~fs~~g~~La~gs~dg  702 (704)
                      .+..-++.++++|+.+.
T Consensus       316 ~~~~~~~~iyv~GG~~~  332 (346)
T TIGR03547       316 VSVSWNNGVLLIGGENS  332 (346)
T ss_pred             EEEEcCCEEEEEeccCC
Confidence            34556888999998764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=90.76  E-value=31  Score=38.40  Aligned_cols=105  Identities=8%  Similarity=0.026  Sum_probs=52.6

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCceeEEecc----CCCCeeEEEEcCCCCEEEEEECCC-----cEEEEeCCCCcE
Q 005277          474 QGHYFASSSHD-----RTARIWSMDRIQPLRIMAG----HLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSSGEC  539 (704)
Q Consensus       474 ~~~~l~sgs~d-----g~i~lwd~~~~~~~~~~~~----~~~~V~~v~~~p~~~~l~tgs~dg-----~I~iwd~~~~~~  539 (704)
                      ++..++.|+.+     ..+..||+.+.+-...-..    ....-.+++. -++++++.|+.++     .+..||+.+.+-
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            56666777654     3577888876543221110    0011112222 2456666776543     467788776543


Q ss_pred             EEEee-----cCCCCEEEEEEecCCCEEEEEeCC----CeEEEEeCCCCee
Q 005277          540 VRIFI-----GHRSMILSLAMSPDGRYMASGDED----GTIMMWDLASGRC  581 (704)
Q Consensus       540 ~~~~~-----~h~~~i~~l~~spdg~~l~sg~~d----g~I~iwdl~~~~~  581 (704)
                      ...-.     ...... +++ .-+++.++.|+.+    ..+.+||+.+.+-
T Consensus       307 ~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W  355 (470)
T PLN02193        307 FHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKW  355 (470)
T ss_pred             EeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEE
Confidence            22110     011111 122 2267777777755    3578888876543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.75  E-value=20  Score=38.88  Aligned_cols=148  Identities=12%  Similarity=0.088  Sum_probs=84.8

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce----
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP----  497 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~----  497 (704)
                      +....+..++++.+++.+..-..++-||-....-...-......+..+.|.+++..++++ .+|.+ +|..+.+..    
T Consensus       239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~  316 (398)
T PLN00033        239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF  316 (398)
T ss_pred             cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence            345666778888877766654333344432111011122334568899999999877766 45554 344444431    


Q ss_pred             -eEEecc--CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee---cCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277          498 -LRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI---GHRSMILSLAMSPDGRYMASGDEDGTI  571 (704)
Q Consensus       498 -~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~---~h~~~i~~l~~spdg~~l~sg~~dg~I  571 (704)
                       ......  ....+..+.|.+++..+++| ..|.+.... ..|+.-....   .-....+.+.|.++++.+++ +.+|.|
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~i  393 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVL  393 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEE
Confidence             222221  22358889998887766665 577666553 4454433322   22456889999877665554 567776


Q ss_pred             EEE
Q 005277          572 MMW  574 (704)
Q Consensus       572 ~iw  574 (704)
                      .-|
T Consensus       394 l~~  396 (398)
T PLN00033        394 LRY  396 (398)
T ss_pred             EEe
Confidence            655

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=90.34  E-value=22  Score=36.04  Aligned_cols=151  Identities=16%  Similarity=0.135  Sum_probs=95.5

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec--CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce-
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-  497 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~-  497 (704)
                      .+-+..+.++  +++...+.++.-++|.|+.+...-.....  ..+--.++..  .|++..++..|.-+.+.|+.+.+. 
T Consensus        86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence            3556677787  66777777888899999987655333221  1133344444  588988888777788888876432 


Q ss_pred             --eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC---CCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277          498 --LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH---RSMILSLAMSPDGRYMASGDEDGTIM  572 (704)
Q Consensus       498 --~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h---~~~i~~l~~spdg~~l~sg~~dg~I~  572 (704)
                        ...+......-..++.  .|++-..+..|+-+.+.|+.+..... +.+|   ...+.++..+++-.+++..++  -+.
T Consensus       162 ~lagrya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPv-li~~~n~g~g~~sv~vsdnr~y~vvy~e--gvl  236 (370)
T COG5276         162 QLAGRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPV-LIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVL  236 (370)
T ss_pred             eeeeeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCe-EEEEEecCCceEEEEecCCeeEEEEccc--ceE
Confidence              2233333333344544  47788888899999999997654322 2222   236788888877666655433  366


Q ss_pred             EEeCCCCe
Q 005277          573 MWDLASGR  580 (704)
Q Consensus       573 iwdl~~~~  580 (704)
                      +-|..+.+
T Consensus       237 ivd~s~~s  244 (370)
T COG5276         237 IVDVSGPS  244 (370)
T ss_pred             EEecCCCC
Confidence            77766554

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=90.05  E-value=31  Score=37.17  Aligned_cols=53  Identities=9%  Similarity=0.051  Sum_probs=25.3

Q ss_pred             CCCEEEEEeCCC-----------eEEEEECCCCceeEEeccCCCCee-EEEEc-CCCCEEEEEECC
Q 005277          474 QGHYFASSSHDR-----------TARIWSMDRIQPLRIMAGHLSDVD-CVRWH-INCNYIATGSSD  526 (704)
Q Consensus       474 ~~~~l~sgs~dg-----------~i~lwd~~~~~~~~~~~~~~~~V~-~v~~~-p~~~~l~tgs~d  526 (704)
                      ++..++.|+.+.           .+..||..+.+-...-........ ..+.. -++.+.+.|+.+
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            566777776532           466778766432221110011111 11121 366777777754

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=89.72  E-value=51  Score=39.26  Aligned_cols=119  Identities=13%  Similarity=0.194  Sum_probs=72.0

Q ss_pred             cCCcCeeEEEEc---C----CCCEEEEEeCCCeEEEEECC------C---------CceeEEec---cCCCCeeEEEEcC
Q 005277          461 GHNYPVWDVQFN---P----QGHYFASSSHDRTARIWSMD------R---------IQPLRIMA---GHLSDVDCVRWHI  515 (704)
Q Consensus       461 ~h~~~V~~v~~s---p----~~~~l~sgs~dg~i~lwd~~------~---------~~~~~~~~---~~~~~V~~v~~~p  515 (704)
                      ....||..|+|.   .    ...+|++-. ...+.|+...      .         ..++..+.   -...+...|+|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            356788888888   2    224555554 3556666611      1         12333333   1234677899998


Q ss_pred             -CCCEEEEEECCCcEEEEeCCCC-----cEEEEeecCCC----------CEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277          516 -NCNYIATGSSDKTVRLWDVSSG-----ECVRIFIGHRS----------MILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (704)
Q Consensus       516 -~~~~l~tgs~dg~I~iwd~~~~-----~~~~~~~~h~~----------~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~  579 (704)
                       +...||+....|...|||+..+     ..++....+.+          ....+.|.++-..|++++. ..+.++|+.+.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence             4578999999999999999211     11111112222          2346788877777776654 46888888876


Q ss_pred             ee
Q 005277          580 RC  581 (704)
Q Consensus       580 ~~  581 (704)
                      ..
T Consensus       235 ~~  236 (765)
T PF10214_consen  235 WQ  236 (765)
T ss_pred             Cc
Confidence            54

These proteins are found in fungi.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.24  E-value=1.4  Score=30.69  Aligned_cols=32  Identities=19%  Similarity=0.323  Sum_probs=26.8

Q ss_pred             CCEEEEEEecCC---CEEEEEeCCCeEEEEeCCCC
Q 005277          548 SMILSLAMSPDG---RYMASGDEDGTIMMWDLASG  579 (704)
Q Consensus       548 ~~i~~l~~spdg---~~l~sg~~dg~I~iwdl~~~  579 (704)
                      +.|.++.|||..   .+|+.+-.-|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999854   58888888899999999953

It contains a characteristic DLL sequence motif.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.24  E-value=13  Score=35.80  Aligned_cols=150  Identities=16%  Similarity=0.116  Sum_probs=80.8

Q ss_pred             CCCEEEEEeC--CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEeccCCCCe
Q 005277          432 LGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDV  508 (704)
Q Consensus       432 ~~~~l~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg-s~dg~i~lwd~~~~~~~~~~~~~~~~V  508 (704)
                      +|.++.+.+.  ...|++||+.+++.+..-+-....+..=-...-|.+|..- -.+|....+|.++.+.+..+. ..+.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence            3455555543  3469999999988776544221111110001113333322 257888899998887776654 23333


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cCCC---CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeee
Q 005277          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (704)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~---~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~  583 (704)
                      ..++  .++.-|+.++...+++.-|..+-.......  ....   .++.+.|- +|...|-.-.+..|...|..+|+.+.
T Consensus       134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence            4444  455556666556667776765543332221  1111   23334443 56666555555566667777777665


Q ss_pred             ee
Q 005277          584 PL  585 (704)
Q Consensus       584 ~~  585 (704)
                      .+
T Consensus       211 wi  212 (262)
T COG3823         211 WI  212 (262)
T ss_pred             EE
Confidence            44

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.93  E-value=4.8  Score=48.50  Aligned_cols=136  Identities=17%  Similarity=0.303  Sum_probs=87.3

Q ss_pred             eCCCeEEEEeCCCCceeEEeecCCcCeeEEEE--------cCCCCEEEEEeCCCeEEEEECCCCc---ee------EEec
Q 005277          440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQF--------NPQGHYFASSSHDRTARIWSMDRIQ---PL------RIMA  502 (704)
Q Consensus       440 s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~--------sp~~~~l~sgs~dg~i~lwd~~~~~---~~------~~~~  502 (704)
                      +.|+.+.+|+.+++.....+.+-...|..|..        -|.=+++..-+.--.|.++-+.-..   ..      ..+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            45778999999998888888877777766653        2222333333333455555432110   11      1222


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC----CC---c-E----------------EEEee-cCCCCEEEEEEec
Q 005277          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS----SG---E-C----------------VRIFI-GHRSMILSLAMSP  557 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~----~~---~-~----------------~~~~~-~h~~~i~~l~~sp  557 (704)
                      .....|.|+....+|+.+++| .||  .+|.+.    .|   + |                +..+. .+..+|..+++..
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            345678999977888877776 566  444431    11   1 1                11123 5677999999998


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC
Q 005277          558 DGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       558 dg~~l~sg~~dg~I~iwdl~~  578 (704)
                      .-..+.+-+..|+|.+||+..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence            888999999999999999976

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.79  E-value=6.3  Score=42.81  Aligned_cols=98  Identities=16%  Similarity=0.140  Sum_probs=56.7

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~  500 (704)
                      .-.|+.+..++.|..++-++.+|.+.++=.+.+..-..|......|.|=.++-+.. |++.+                  
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss------------------  163 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSS------------------  163 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce-eeccC------------------
Confidence            34688899999999999889999776654443444344443333344433332221 22211                  


Q ss_pred             eccCCCCeeEEEEcCCC---CEEEEEECCCcEEEEeCCCCcEE
Q 005277          501 MAGHLSDVDCVRWHINC---NYIATGSSDKTVRLWDVSSGECV  540 (704)
Q Consensus       501 ~~~~~~~V~~v~~~p~~---~~l~tgs~dg~I~iwd~~~~~~~  540 (704)
                         ..-.+..++|||++   ..+..-+.|..||+||+.....+
T Consensus       164 ---~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  164 ---TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             ---CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence               01123456677754   56666667788888887654433

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=88.65  E-value=5.8  Score=42.90  Aligned_cols=138  Identities=16%  Similarity=0.197  Sum_probs=86.2

Q ss_pred             EEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCC-------CEEEEEECCCcEEEEeCCC-CcEEEEeecCCCC
Q 005277          478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-------NYIATGSSDKTVRLWDVSS-GECVRIFIGHRSM  549 (704)
Q Consensus       478 l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~-------~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~  549 (704)
                      +..|+....++-.|++.++.+.....|...  -|.|.|.-       ..-++|-++..|.-.|.+- |..+... .....
T Consensus       483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~-esKdY  559 (776)
T COG5167         483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV-ESKDY  559 (776)
T ss_pred             EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-eehhc
Confidence            344556667788888899888888766543  67777742       2234566677777777763 3333222 12222


Q ss_pred             EEEEEEec----CCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277          550 ILSLAMSP----DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI  625 (704)
Q Consensus       550 i~~l~~sp----dg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (704)
                      ++.-.||.    ...++|+|+..|.|++||--.-+.-..+.+....|..+..                            
T Consensus       560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idv----------------------------  611 (776)
T COG5167         560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDV----------------------------  611 (776)
T ss_pred             cccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEe----------------------------
Confidence            22222332    3458999999999999995443444445666677777776                            


Q ss_pred             EeecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277          626 IYFGCASCEGSLLASGSADCTVKLWDVT  653 (704)
Q Consensus       626 ~~~~~~s~~g~~lasgs~Dg~V~iWd~~  653 (704)
                            +.+|.++++.+. ..+.+-|+.
T Consensus       612 ------ta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         612 ------TANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             ------ecCCcEEEEeec-ceEEEEecc
Confidence                  778887766554 466666664

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=87.96  E-value=44  Score=36.24  Aligned_cols=140  Identities=14%  Similarity=0.142  Sum_probs=76.9

Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE--EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe-----
Q 005277          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-----  580 (704)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~-----  580 (704)
                      ...+...+++.++++|.....++-||-  |..  ...-......++++.|.++|..++++ .+|.+. |....++     
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence            334556678877777754433344542  322  11222345578999999999887766 455543 3434443     


Q ss_pred             eeeeecC--CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277          581 CVTPLMG--HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       581 ~~~~~~~--h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~  658 (704)
                      .......  -...+.++.+                                  .+++..+++| ..|.+.... ..++. 
T Consensus       317 ~f~~~~~~~~~~~l~~v~~----------------------------------~~d~~~~a~G-~~G~v~~s~-D~G~t-  359 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGY----------------------------------RSKKEAWAAG-GSGILLRST-DGGKS-  359 (398)
T ss_pred             ceeecccCCCCcceEEEEE----------------------------------cCCCcEEEEE-CCCcEEEeC-CCCcc-
Confidence            1222211  1134666666                                  6666655554 567666653 22211 


Q ss_pred             cccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          659 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       659 ~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                                 +.....-..-..+.+.+.|.+++..+++|.
T Consensus       360 -----------W~~~~~~~~~~~~ly~v~f~~~~~g~~~G~  389 (398)
T PLN00033        360 -----------WKRDKGADNIAANLYSVKFFDDKKGFVLGN  389 (398)
T ss_pred             -----------eeEccccCCCCcceeEEEEcCCCceEEEeC
Confidence                       111111223346789999999888888764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=87.62  E-value=1.6  Score=30.41  Aligned_cols=31  Identities=19%  Similarity=0.389  Sum_probs=26.4

Q ss_pred             CCEEEEEEcCC-C--CEEEEEeCCCcEEEEEccc
Q 005277          352 NGLNCASISQD-G--SLVAGGFSDSSLKVWDMAK  382 (704)
Q Consensus       352 ~~V~~~~fs~d-g--~~lasg~~dg~I~iwdl~~  382 (704)
                      +.|.|+.|||+ +  .+||..-..|.|.|+|+..
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            46899999985 4  5999998899999999873

It contains a characteristic DLL sequence motif.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=87.62  E-value=18  Score=34.79  Aligned_cols=122  Identities=12%  Similarity=0.175  Sum_probs=72.2

Q ss_pred             eCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc--CCC---CeeEEEEc
Q 005277          440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG--HLS---DVDCVRWH  514 (704)
Q Consensus       440 s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~--~~~---~V~~v~~~  514 (704)
                      -.+|.-..+|.++.+++..+. ..+.=|.++-  ++.-++.++...+++.-|.++........-  ...   .++-+.| 
T Consensus       108 w~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-  183 (262)
T COG3823         108 WKEGVAFKYDADTLEELGRFS-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-  183 (262)
T ss_pred             eccceeEEEChHHhhhhcccc-cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-
Confidence            357788889998888776654 3445566655  555577766666777777665443332221  111   2233344 


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCcEEEEee------------cCCCCEEEEEEecCC-CEEEEE
Q 005277          515 INCNYIATGSSDKTVRLWDVSSGECVRIFI------------GHRSMILSLAMSPDG-RYMASG  565 (704)
Q Consensus       515 p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~------------~h~~~i~~l~~spdg-~~l~sg  565 (704)
                      -+|...|-.-.+..|...|..+|+.+..+.            .|.+-.+.+++.|++ +++++|
T Consensus       184 VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         184 VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            245555544455566666777777665442            244567889999977 555555

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=87.62  E-value=0.091  Score=55.87  Aligned_cols=147  Identities=12%  Similarity=0.212  Sum_probs=101.1

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeEE
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRTARIWSMDRIQPLRI  500 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-sgs~dg~i~lwd~~~~~~~~~  500 (704)
                      ..-....|-|.+.-++.++.+..+..||-. ++...... .++...+++|..++..++ .+-..+.+.+||+.+....+.
T Consensus        35 v~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL  112 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL  112 (615)
T ss_pred             cccceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence            334456788888778888888889899865 33322222 344556788887776544 445778999999976443322


Q ss_pred             eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (704)
Q Consensus       501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I  571 (704)
                      -.+....-.-+.|++....++.|...|.+.+++..+.+.+-..-.|...+++++|.+.+.. +.++.|..+
T Consensus       113 E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd~~L  182 (615)
T KOG2247|consen  113 ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCDNTL  182 (615)
T ss_pred             hccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcHHHH
Confidence            2222333333789999999999999999999998877766555458899999999987754 444444433

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=87.39  E-value=42  Score=35.94  Aligned_cols=106  Identities=16%  Similarity=0.060  Sum_probs=64.8

Q ss_pred             EEEEeCCCeEEEEECCCCceeEEeccC--CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-CCEEEEE
Q 005277          478 FASSSHDRTARIWSMDRIQPLRIMAGH--LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLA  554 (704)
Q Consensus       478 l~sgs~dg~i~lwd~~~~~~~~~~~~~--~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~i~~l~  554 (704)
                      +..+..+|.+.-.|.+++..+.....-  ...+.+-.+..+|+ +++++.+|.++.+|.++|..+..+.... ..+..-.
T Consensus        71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~  149 (370)
T COG1520          71 VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPP  149 (370)
T ss_pred             EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCc
Confidence            444467777777787777655433221  12222222223555 7888889999999999999988887655 1122222


Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277          555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       555 ~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                      .-.++ .+..++.+|.+...|..+|...-..
T Consensus       150 v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~  179 (370)
T COG1520         150 VVGDG-TVYVGTDDGHLYALNADTGTLKWTY  179 (370)
T ss_pred             EEcCc-EEEEecCCCeEEEEEccCCcEEEEE
Confidence            22233 3344447788888888888776554

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.19  E-value=37  Score=35.72  Aligned_cols=143  Identities=15%  Similarity=0.215  Sum_probs=85.9

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCe------EEEEeCCCC----cee-----EEeecCCc--------CeeEEEEcCCCCE
Q 005277          421 SGPVYSASFSPLGDFILSSSADTT------IRLWSTKLN----ANL-----VCYKGHNY--------PVWDVQFNPQGHY  477 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~------I~lwd~~~~----~~~-----~~~~~h~~--------~V~~v~~sp~~~~  477 (704)
                      -+.+.+|.+.+++..+++.|.+|.      +...++...    ..+     ..++.-.+        ..-+|++.++|.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            367889999976666777777777      555555431    111     11111111        2347888778887


Q ss_pred             EEEEeCC------CeEEEEECCCCceeEEec---------------cCCCCeeEEEEcCCCCEEEEEEC-----CC--c-
Q 005277          478 FASSSHD------RTARIWSMDRIQPLRIMA---------------GHLSDVDCVRWHINCNYIATGSS-----DK--T-  528 (704)
Q Consensus       478 l~sgs~d------g~i~lwd~~~~~~~~~~~---------------~~~~~V~~v~~~p~~~~l~tgs~-----dg--~-  528 (704)
                      +++.-.+      ..|..++.+ ++.+..+.               .....+.+++++|+|+.|+++..     |+  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            7776666      778888876 44433331               13346789999999997766542     22  1 


Q ss_pred             ------EEEE--eCCC-CcEEEEe--ec-------CCCCEEEEEEecCCCEEEE
Q 005277          529 ------VRLW--DVSS-GECVRIF--IG-------HRSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       529 ------I~iw--d~~~-~~~~~~~--~~-------h~~~i~~l~~spdg~~l~s  564 (704)
                            ++++  |..+ +.....+  .-       ....|+.+.+-+++++|+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                  4554  4444 3222222  11       3467888999999987765

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.13  E-value=4.7  Score=39.76  Aligned_cols=70  Identities=16%  Similarity=0.249  Sum_probs=52.7

Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-------e-------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIF-------I-------GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-------~-------~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                      +..+++++++-+.+|.+++||+.+++++..-       .       .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4467889999999999999999998765422       1       2456788999998888777654 57889998765


Q ss_pred             Ceeee
Q 005277          579 GRCVT  583 (704)
Q Consensus       579 ~~~~~  583 (704)
                      +.-+.
T Consensus        97 ~~W~~  101 (219)
T PF07569_consen   97 GCWIR  101 (219)
T ss_pred             ceeEE
Confidence            54433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.98  E-value=9.2  Score=40.90  Aligned_cols=136  Identities=9%  Similarity=0.085  Sum_probs=85.6

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eEEe-ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE--
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNAN--LVCY-KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI--  500 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~--~~~~-~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~--  500 (704)
                      .+-|...++.|+ |...|.+.-|-+.....  ...+ ....++|.+|.|++|.+.+|+--.+++|.+++....++...  
T Consensus        27 gvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~  105 (657)
T KOG2377|consen   27 GVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT  105 (657)
T ss_pred             ceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence            444543344443 33344566665543321  1222 23467999999999999999999999999999844333222  


Q ss_pred             --eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277          501 --MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       501 --~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~~l~s  564 (704)
                        .+.....|....|..+. -+|.-+.. .+-+|.+.. .+.++..+.|+..|.-..|.++.+.+.-
T Consensus       106 ~~ck~k~~~IlGF~W~~s~-e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL  170 (657)
T KOG2377|consen  106 QECKTKNANILGFCWTSST-EIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILL  170 (657)
T ss_pred             HHhccCcceeEEEEEecCe-eEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEee
Confidence              22334568899998774 45554433 366666543 3456667778888888889888775443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=86.94  E-value=43  Score=35.07  Aligned_cols=106  Identities=5%  Similarity=0.070  Sum_probs=51.8

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCce---eEEeccCCCCe--eEEEEcCCCCEEEEEEC-----CCcEEEEeCCCCc
Q 005277          474 QGHYFASSSHD-----RTARIWSMDRIQP---LRIMAGHLSDV--DCVRWHINCNYIATGSS-----DKTVRLWDVSSGE  538 (704)
Q Consensus       474 ~~~~l~sgs~d-----g~i~lwd~~~~~~---~~~~~~~~~~V--~~v~~~p~~~~l~tgs~-----dg~I~iwd~~~~~  538 (704)
                      ++..++.|+.+     ..+..+|+.+...   ...+..-..+.  .+++. -++.+.+.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            56677777754     3466667665442   11221111111  12222 24566666664     2458888987665


Q ss_pred             EEEEee-cCCCCEEEEEEecCCCEEEEEeCCCe----EEEEeCCCCe
Q 005277          539 CVRIFI-GHRSMILSLAMSPDGRYMASGDEDGT----IMMWDLASGR  580 (704)
Q Consensus       539 ~~~~~~-~h~~~i~~l~~spdg~~l~sg~~dg~----I~iwdl~~~~  580 (704)
                      -...-. .........+...++++.+.|+.++.    +.+||+.+.+
T Consensus       151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            332111 11112222333346777777776542    4567776543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=86.15  E-value=44  Score=34.44  Aligned_cols=60  Identities=10%  Similarity=0.113  Sum_probs=39.1

Q ss_pred             eEEEEECCCCceeEEecc------CCCCeeEEEEcCCC-----CEEEEEE-CCCcEEEEeCCCCcEEEEeec
Q 005277          486 TARIWSMDRIQPLRIMAG------HLSDVDCVRWHINC-----NYIATGS-SDKTVRLWDVSSGECVRIFIG  545 (704)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~------~~~~V~~v~~~p~~-----~~l~tgs-~dg~I~iwd~~~~~~~~~~~~  545 (704)
                      .|.+||+.+.+.++.+.-      ..+.+..+.+....     .++..+. ..+.|.++|+.+++..+....
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~  106 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN  106 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence            677788888887776642      23456667776522     2444433 346799999999988776643

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=85.55  E-value=0.13  Score=54.69  Aligned_cols=135  Identities=12%  Similarity=0.119  Sum_probs=91.3

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE
Q 005277          357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI  436 (704)
Q Consensus       357 ~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l  436 (704)
                      ..|-+.+.-++.++.+-.|..||-.+.                              ...-...++....++|..+++.+
T Consensus        40 ~~w~~e~~nlavaca~tiv~~YD~agq------------------------------~~le~n~tg~aldm~wDkegdvl   89 (615)
T KOG2247|consen   40 HRWRPEGHNLAVACANTIVIYYDKAGQ------------------------------VILELNPTGKALDMAWDKEGDVL   89 (615)
T ss_pred             eeEecCCCceehhhhhhHHHhhhhhcc------------------------------eecccCCchhHhhhhhccccchh
Confidence            345666656888888888888885431                              01111234566778888887754


Q ss_pred             E-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcC
Q 005277          437 L-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI  515 (704)
Q Consensus       437 ~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p  515 (704)
                      + .+-..+.+.+|++.+......-.+.+..-.-+.|++.+..++.+...|.+.+++..+.+.+-....|...+.+++|.+
T Consensus        90 avlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen   90 AVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL  169 (615)
T ss_pred             hhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence            4 566778999999985432211111111222278999888899999999999999988766665555999999999988


Q ss_pred             CCCEEE
Q 005277          516 NCNYIA  521 (704)
Q Consensus       516 ~~~~l~  521 (704)
                      .+..+.
T Consensus       170 Ed~vil  175 (615)
T KOG2247|consen  170 EDYVIL  175 (615)
T ss_pred             cceeee
Confidence            764443

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.19  E-value=3.9  Score=42.87  Aligned_cols=122  Identities=19%  Similarity=0.280  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCCCCCCCCCch-hhhccccccccccCChhhHHHHHHHHHHHHhhc
Q 005277            3 ELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDP-ELSKFFRTFSESEDGPARYQDEYSKLRSWTYSS   81 (704)
Q Consensus         3 ~~~~~~~v~~yl~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   81 (704)
                      .+.++.|+..++-+.|-.+.-..|.+|+.......  ...   .+- ++...+......+..|         ..+|+.+.
T Consensus       116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~--~~~---~~F~el~~Iv~~lke~Dl~~---------aLeWa~~~  181 (394)
T KOG2817|consen  116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDES--KSR---TEFVELNQIVEALKERDLEP---------ALEWAESN  181 (394)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcch--hhh---hhHHHHHHHHHHHHhccchh---------HHHHHHHh
Confidence            44579999999999999999999999997754200  000   000 0001111111112222         35788887


Q ss_pred             cccchhhhhhhhHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhhHHhhhHHHHHHHhcC
Q 005277           82 LDLYKHELLHVLYPVFIHCFMDLVAKGHIQ--EARTFFNNFREDHEMMHLRDLQKLEGV  138 (704)
Q Consensus        82 ld~~k~el~~~l~p~f~~~~l~l~~~~~~~--~a~~f~~~~~~~~~~~~~~~~~~l~~~  138 (704)
                      -+..+.+=+.|=|=++-+-|++++..|..+  +|-.+-.++-.-|...|..||+.+...
T Consensus       182 ~~~L~~~~s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~s  240 (394)
T KOG2817|consen  182 RQKLKEKSSSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGS  240 (394)
T ss_pred             hhhhccccccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHH
Confidence            777777667777888999999999999988  998888888777877788899987553

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.93  E-value=9.4  Score=36.06  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=25.5

Q ss_pred             cCeEEEEEcCCC------CEEEEEeCCCeEEEEeCCC
Q 005277          422 GPVYSASFSPLG------DFILSSSADTTIRLWSTKL  452 (704)
Q Consensus       422 ~~V~~l~~sp~~------~~l~s~s~Dg~I~lwd~~~  452 (704)
                      ..|.+++|||.|      ..|++.+.+|.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            479999999955      3688889999999998663

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=83.57  E-value=63  Score=34.01  Aligned_cols=102  Identities=19%  Similarity=0.280  Sum_probs=62.6

Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCe------EEEEECCC----CceeEE-----eccC--------CCCeeEEEEcCCCCEE
Q 005277          464 YPVWDVQFNPQGHYFASSSHDRT------ARIWSMDR----IQPLRI-----MAGH--------LSDVDCVRWHINCNYI  520 (704)
Q Consensus       464 ~~V~~v~~sp~~~~l~sgs~dg~------i~lwd~~~----~~~~~~-----~~~~--------~~~V~~v~~~p~~~~l  520 (704)
                      +.+..+.+.+++..+++.+.+|.      +..+++..    ...+..     +...        .-+..+|++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            45677888865556666666666      55555433    111111     1111        1155678887788777


Q ss_pred             EEEECC------CcEEEEeCCCCcEEEEee---------------cCCCCEEEEEEecCCCEEEEEe
Q 005277          521 ATGSSD------KTVRLWDVSSGECVRIFI---------------GHRSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       521 ~tgs~d------g~I~iwd~~~~~~~~~~~---------------~h~~~i~~l~~spdg~~l~sg~  566 (704)
                      ++.-.+      ..|+.++.. |+....+.               ..+...-+|+++|+|+.|+++.
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            776666      778888866 66544431               1344688999999999776654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=83.41  E-value=36  Score=34.89  Aligned_cols=112  Identities=16%  Similarity=0.251  Sum_probs=72.1

Q ss_pred             CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE------CCCcEEEEeCCCCcEEEEeec-----CCCCEEEE
Q 005277          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS------SDKTVRLWDVSSGECVRIFIG-----HRSMILSL  553 (704)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs------~dg~I~iwd~~~~~~~~~~~~-----h~~~i~~l  553 (704)
                      ..|++||..+.+-...-.+-.+.|..+.|..+.+.++.|.      ....+..||..+..- ..+.+     -.++|..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence            4699999988766555555667899999986666776664      355688899876643 22333     13678888


Q ss_pred             EEec-CCC-EEEEEe---CCCeEEEEeCCCCeeeee-ecCCCceeeeeee
Q 005277          554 AMSP-DGR-YMASGD---EDGTIMMWDLASGRCVTP-LMGHTSCVWTLAY  597 (704)
Q Consensus       554 ~~sp-dg~-~l~sg~---~dg~I~iwdl~~~~~~~~-~~~h~~~V~sl~~  597 (704)
                      .+.. |+. +.++|.   .+..|..||=.+...+.. .......|..+.+
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~  144 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV  144 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence            7754 333 333333   234577787666666555 3334567777766

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=83.29  E-value=7.7  Score=38.26  Aligned_cols=28  Identities=25%  Similarity=0.691  Sum_probs=24.2

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277          555 MSPDGRYMASGDEDGTIMMWDLASGRCV  582 (704)
Q Consensus       555 ~spdg~~l~sg~~dg~I~iwdl~~~~~~  582 (704)
                      +..++.+|++-+.+|.+++||+.+++.+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~   45 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAV   45 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence            4457899999999999999999988764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=83.11  E-value=34  Score=36.72  Aligned_cols=160  Identities=15%  Similarity=0.082  Sum_probs=93.0

Q ss_pred             CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-EEec-cCCCC----ee-EEEEcCCCCEEEEEECCCcEEEE-e
Q 005277          462 HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-RIMA-GHLSD----VD-CVRWHINCNYIATGSSDKTVRLW-D  533 (704)
Q Consensus       462 h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~-~~~~-~~~~~----V~-~v~~~p~~~~l~tgs~dg~I~iw-d  533 (704)
                      ...+|..+-..|+|+.+..-+. ..+.++++.+.... +.+. ...++    |+ .+..-..|.-+.+++.||.|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence            3456778889999998877665 78899988764321 1111 11111    22 11122356678888999998877 6


Q ss_pred             CCCCc-----EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcccccc
Q 005277          534 VSSGE-----CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYL  608 (704)
Q Consensus       534 ~~~~~-----~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~  608 (704)
                      ++.+.     .++.++-....+..+.-..+.+-+++-...|++.++.-...+.+-.-.... ...-+++           
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~-~~~~~~~-----------  365 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ-APQLVAM-----------  365 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc-Ccceeee-----------
Confidence            65432     223332222334433333344567777778888877654443332221111 2333444           


Q ss_pred             ccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277          609 KISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~  658 (704)
                                             ||.+.++++-. .|.++++.+++....
T Consensus       366 -----------------------Sp~~~~Ll~e~-~gki~~~~l~Nr~Pe  391 (733)
T COG4590         366 -----------------------SPNQAYLLSED-QGKIRLAQLENRNPE  391 (733)
T ss_pred             -----------------------Ccccchheeec-CCceEEEEecCCCCC
Confidence                                   88888887764 478999999886653

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=83.05  E-value=60  Score=33.44  Aligned_cols=154  Identities=14%  Similarity=0.214  Sum_probs=88.5

Q ss_pred             CeEEEEEcCCCCEEE--EEeCC----------CeEEEEeCCCCceeEEeecC------CcCeeEEEEcCCC-----CEE-
Q 005277          423 PVYSASFSPLGDFIL--SSSAD----------TTIRLWSTKLNANLVCYKGH------NYPVWDVQFNPQG-----HYF-  478 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~--s~s~D----------g~I~lwd~~~~~~~~~~~~h------~~~V~~v~~sp~~-----~~l-  478 (704)
                      .|+.+...+++++-+  +|..+          -.|.+||+.+++.++++.-.      .+.+.++.+....     .++ 
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            367777777776433  34211          26889999999988877532      4556777776622     233 


Q ss_pred             EEEeCCCeEEEEECCCCceeEEeccCCC-------------------CeeEEEEcC---CCCEEEEEECCCcEEEEeCCC
Q 005277          479 ASSSHDRTARIWSMDRIQPLRIMAGHLS-------------------DVDCVRWHI---NCNYIATGSSDKTVRLWDVSS  536 (704)
Q Consensus       479 ~sgs~dg~i~lwd~~~~~~~~~~~~~~~-------------------~V~~v~~~p---~~~~l~tgs~dg~I~iwd~~~  536 (704)
                      ++=+..+-+.++|+.+++..+....+..                   .+..++.+|   ++++|..+...+ -++|.+.+
T Consensus        82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T  160 (287)
T PF03022_consen   82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPT  160 (287)
T ss_dssp             EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEH
T ss_pred             EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEH
Confidence            3334556899999998877666543221                   234444443   444555444322 12232211


Q ss_pred             -----C---------cEEEEeecCC-CCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          537 -----G---------ECVRIFIGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       537 -----~---------~~~~~~~~h~-~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                           .         ..+..+ +.. .....++++++|..+++--..+.|..|+..+
T Consensus       161 ~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  161 SVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             HHHCSTT--HHH-HHHT-EEE-EE---SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred             HHhhCccccccccccccceec-cccCCCCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence                 1         111222 222 3567789999999999999999999999876

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.90  E-value=12  Score=45.33  Aligned_cols=92  Identities=16%  Similarity=0.226  Sum_probs=56.3

Q ss_pred             eCCCeEEEEECCCCceeEEeccCCCCeeEEEE--------cCCCCEEEEEECCCcEEEEeCC----CCcEE-----EEee
Q 005277          482 SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW--------HINCNYIATGSSDKTVRLWDVS----SGECV-----RIFI  544 (704)
Q Consensus       482 s~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~--------~p~~~~l~tgs~dg~I~iwd~~----~~~~~-----~~~~  544 (704)
                      +.|+.+.+|+.+++.....+.+-...|..|..        -|.=+++++-+.--.|.++-+.    ++..-     ..+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            45789999999998777777776666666543        2333455544445556666442    21110     1122


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       545 ~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                      .....|+|+....+|+.+++|- ||  .+|.+
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl  204 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGR-DG--NLYEL  204 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeec-CC--CEEEE
Confidence            2355789999888898777664 55  45543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=82.75  E-value=57  Score=32.94  Aligned_cols=154  Identities=12%  Similarity=0.128  Sum_probs=99.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE--
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI--  500 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~--  500 (704)
                      .-+.++-.|||..-+++...+.|--.|-.+++....-.+....-..|...|+|..-++-+.. -|.-.|-++.+..+.  
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l  141 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL  141 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence            34677888999888888888888888988888766655666667788888988765554433 455555544432221  


Q ss_pred             -eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          501 -MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       501 -~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                       ............|.+.|++-+++.. |.---.|-. ...+++|.. .....+.|+..|+|..-++.-.+..|-..|..+
T Consensus       142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~  219 (353)
T COG4257         142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA  219 (353)
T ss_pred             ccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence             1223456778889999998888752 211111211 122333332 223567789999999888776777777777766


Q ss_pred             C
Q 005277          579 G  579 (704)
Q Consensus       579 ~  579 (704)
                      +
T Consensus       220 ~  220 (353)
T COG4257         220 G  220 (353)
T ss_pred             C
Confidence            5

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=82.56  E-value=87  Score=34.94  Aligned_cols=150  Identities=16%  Similarity=0.149  Sum_probs=75.5

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcC---eeEEEEcCCCCEEEEEeC-------------CCeEEEE
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP---VWDVQFNPQGHYFASSSH-------------DRTARIW  490 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---V~~v~~sp~~~~l~sgs~-------------dg~i~lw  490 (704)
                      +...++|.+++..+  ..+..+|+. |+.+..+......   =.++.+.|+|++|+.+..             .-.|..+
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            56678888776555  678888886 6665555432211   356888899999888771             1124444


Q ss_pred             ECCCCceeEEec--cCC-------------------------CCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCcEEEE
Q 005277          491 SMDRIQPLRIMA--GHL-------------------------SDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRI  542 (704)
Q Consensus       491 d~~~~~~~~~~~--~~~-------------------------~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~  542 (704)
                      | .+++.+..+.  .|.                         -.++++.+.+..+.|+..+. -..|...|.++++....
T Consensus       230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI  308 (477)
T ss_dssp             --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred             C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence            4 4454443321  110                         13778999985555555555 45899999999988887


Q ss_pred             eecCCCCEE---EEEEec------------------CCCEEEEEeCCC---eEEEEeCCCCe
Q 005277          543 FIGHRSMIL---SLAMSP------------------DGRYMASGDEDG---TIMMWDLASGR  580 (704)
Q Consensus       543 ~~~h~~~i~---~l~~sp------------------dg~~l~sg~~dg---~I~iwdl~~~~  580 (704)
                      +-.+.+.-.   ...+.|                  .|++-+.--.+|   .|.++|=..++
T Consensus       309 lg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~r  370 (477)
T PF05935_consen  309 LGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNGR  370 (477)
T ss_dssp             ES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE--TTG
T ss_pred             eCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECCCCC
Confidence            755533111   001111                  245555556677   88888855443

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.52  E-value=28  Score=38.06  Aligned_cols=98  Identities=12%  Similarity=0.035  Sum_probs=54.6

Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF  628 (704)
Q Consensus       549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (704)
                      .|..+..++.|..++-.|.+|.+.++=.+..-+-..+......|.|-.+...              ..-+...+...+-.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~--------------~~~ftss~~ltl~Q  170 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA--------------ERFFTSSTSLTLKQ  170 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc--------------ceeeccCCceeeee
Confidence            4677888999999999999996655432322222233333333433332100              00000011112222


Q ss_pred             cccCCCC---CEEEEEeCCCcEEEEeCCCCccccc
Q 005277          629 GCASCEG---SLLASGSADCTVKLWDVTTSTKVLK  660 (704)
Q Consensus       629 ~~~s~~g---~~lasgs~Dg~V~iWd~~~~~~~~~  660 (704)
                      +.++|++   ..|..-+.|++||+||......+..
T Consensus       171 a~WHP~S~~D~hL~iL~sdnviRiy~lS~~telyl  205 (741)
T KOG4460|consen  171 AAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYL  205 (741)
T ss_pred             ccccCCccCCceEEEEecCcEEEEEecCCcchhhc
Confidence            3336654   6788888899999999988766533

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=82.17  E-value=25  Score=36.02  Aligned_cols=71  Identities=14%  Similarity=0.236  Sum_probs=47.3

Q ss_pred             CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe------CCCeEEEEeCCCCeeeeeecC-----CCceeee
Q 005277          526 DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD------EDGTIMMWDLASGRCVTPLMG-----HTSCVWT  594 (704)
Q Consensus       526 dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~------~dg~I~iwdl~~~~~~~~~~~-----h~~~V~s  594 (704)
                      -..|++||..+.+-...-.+-.+.|+++.|..+.+.+++|.      ....+..||+.+.... .+.+     -.++|..
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEE
Confidence            34599999887766555555668899999986666666664      4567888998766432 2222     1356666


Q ss_pred             eee
Q 005277          595 LAY  597 (704)
Q Consensus       595 l~~  597 (704)
                      +.+
T Consensus        94 ~~~   96 (281)
T PF12768_consen   94 LTF   96 (281)
T ss_pred             EEe
Confidence            655

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=81.12  E-value=5.3  Score=42.55  Aligned_cols=166  Identities=16%  Similarity=0.109  Sum_probs=100.6

Q ss_pred             eccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEe-ecCC----cCee-EEEEcCCCCEEEEEeCCCeEE
Q 005277          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCY-KGHN----YPVW-DVQFNPQGHYFASSSHDRTAR  488 (704)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~-~~~-~~h~----~~V~-~v~~sp~~~~l~sgs~dg~i~  488 (704)
                      .+..-...|..+-..|||+.|..-+. .++.++++...... ..+ ....    ..|+ .+..-..|..+.+++.||-|.
T Consensus       215 ~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs  293 (733)
T COG4590         215 LLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS  293 (733)
T ss_pred             hcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence            34455677888999999998886665 57888888754321 111 1101    1122 222233566688888999988


Q ss_pred             EE-ECCCC-c----eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEE
Q 005277          489 IW-SMDRI-Q----PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM  562 (704)
Q Consensus       489 lw-d~~~~-~----~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l  562 (704)
                      -| |.+.. +    .++.+.-....+..+.-..+.+-+++-+.+|++.++.....+.+- +..--..+.-+++||++.+|
T Consensus       294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~L  372 (733)
T COG4590         294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYL  372 (733)
T ss_pred             eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchh
Confidence            87 44332 1    233333333444444333345567777788888888765554443 22223366778999999998


Q ss_pred             EEEeCCCeEEEEeCCCCeeeee
Q 005277          563 ASGDEDGTIMMWDLASGRCVTP  584 (704)
Q Consensus       563 ~sg~~dg~I~iwdl~~~~~~~~  584 (704)
                      ++-. .|.|+++.+.+..+--+
T Consensus       373 l~e~-~gki~~~~l~Nr~Peis  393 (733)
T COG4590         373 LSED-QGKIRLAQLENRNPEIS  393 (733)
T ss_pred             eeec-CCceEEEEecCCCCCcc
Confidence            8754 46799998877654433

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=80.70  E-value=9.1  Score=36.16  Aligned_cols=30  Identities=20%  Similarity=0.285  Sum_probs=24.9

Q ss_pred             CCeeEEEEcCCC------CEEEEEECCCcEEEEeCC
Q 005277          506 SDVDCVRWHINC------NYIATGSSDKTVRLWDVS  535 (704)
Q Consensus       506 ~~V~~v~~~p~~------~~l~tgs~dg~I~iwd~~  535 (704)
                      ..|..++|+|.|      .+|++-+.+|.|.||.-.
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            478999999954      578888999999999765

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=80.54  E-value=75  Score=33.22  Aligned_cols=65  Identities=8%  Similarity=0.203  Sum_probs=35.0

Q ss_pred             CCCEEEEEeC-----CCeEEEEECCCCceeEE--eccCCCCeeEEEEcCCCCEEEEEECCC----cEEEEeCCCCcE
Q 005277          474 QGHYFASSSH-----DRTARIWSMDRIQPLRI--MAGHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGEC  539 (704)
Q Consensus       474 ~~~~l~sgs~-----dg~i~lwd~~~~~~~~~--~~~~~~~V~~v~~~p~~~~l~tgs~dg----~I~iwd~~~~~~  539 (704)
                      +++.++.|+.     ...+..||+.+.+-...  +.. .......+...++++.+.|+.++    .+..||..+.+-
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            5667777764     24577788776543221  111 11112222234567777777654    356888877653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=80.40  E-value=87  Score=33.53  Aligned_cols=135  Identities=16%  Similarity=0.181  Sum_probs=82.1

Q ss_pred             CeEEEEeCCCC-ceeEEeecC-------CcCeeEEEE--cC-CCC-EEEEEeCCCeEEEEECC---CC----ceeEEecc
Q 005277          443 TTIRLWSTKLN-ANLVCYKGH-------NYPVWDVQF--NP-QGH-YFASSSHDRTARIWSMD---RI----QPLRIMAG  503 (704)
Q Consensus       443 g~I~lwd~~~~-~~~~~~~~h-------~~~V~~v~~--sp-~~~-~l~sgs~dg~i~lwd~~---~~----~~~~~~~~  503 (704)
                      .+|++|.+... ..+..+...       ...+..+|+  +| +|. +++....+|.+.-|-+.   .+    +.++.|..
T Consensus       127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~  206 (381)
T PF02333_consen  127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV  206 (381)
T ss_dssp             -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred             CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence            47999987632 223333211       123566776  34 454 56667788988888764   22    35677764


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-----CcEEEEeec--CCCCEEEEEEec--CC--CEEEEEeCCCeEE
Q 005277          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-----GECVRIFIG--HRSMILSLAMSP--DG--RYMASGDEDGTIM  572 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-----~~~~~~~~~--h~~~i~~l~~sp--dg--~~l~sg~~dg~I~  572 (704)
                       .+.+..|.......+|+.|-.+.-|+-|+...     +..+....+  ....|-.|++-.  +|  .+|++.-.+++..
T Consensus       207 -~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~  285 (381)
T PF02333_consen  207 -GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFA  285 (381)
T ss_dssp             -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred             -CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence             45788888888888999999998888888762     222322222  345677777753  33  3555666788999


Q ss_pred             EEeCCC
Q 005277          573 MWDLAS  578 (704)
Q Consensus       573 iwdl~~  578 (704)
                      |||...
T Consensus       286 Vy~r~~  291 (381)
T PF02333_consen  286 VYDREG  291 (381)
T ss_dssp             EEESST
T ss_pred             EEecCC
Confidence            999764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=80.16  E-value=68  Score=35.10  Aligned_cols=31  Identities=32%  Similarity=0.669  Sum_probs=25.4

Q ss_pred             CCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          548 SMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       548 ~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                      ..|.+++..+..+.|++...+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            4489999999889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	704
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-31
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-29
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-25
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-15
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-25
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-15
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-25
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-15
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-25
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-15
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		8e-25
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-15
2h9l_A	329	Wdr5delta23 Length = 329		8e-25
2h9l_A	329	Wdr5delta23 Length = 329		3e-15
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		9e-25
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-15
2g99_A	308	Structural Basis For The Specific Recognition Of Me		9e-25
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-15
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		9e-25
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-15
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		9e-25
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-15
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		9e-25
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-15
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-24
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-15
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-24
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-15
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-24
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-15
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-24
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-24
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		6e-15
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-24
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-14
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-24
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-20
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-14
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		5e-20
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-11
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-19
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-19
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-19
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-19
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		8e-19
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-06
2j4b_A	138	Crystal Structure Of Encephalitozoon Cuniculi Taf5		8e-19
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-18
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-14
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-18
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-18
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-18
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-13
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-18
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-13
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-17
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-12
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-17
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-12
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-17
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-14
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		5e-17
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-10
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		6e-17
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-07
2j49_A	148	Crystal Structure Of Yeast Taf5 N-Terminal Domain L		1e-16
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-16
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-16
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-16
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-07
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-16
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-15
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-07
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-16
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-15
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		5e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-16
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		5e-16
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		5e-16
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		9e-16
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		7e-12
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-15
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-15
2nxp_A	156	Structure Of Ntd2 Domain Of The Human Taf5 Subunit		3e-15
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-15
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-15
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-15
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-14
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-12
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		8e-11
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-12
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-11
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-10
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		5e-11
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		1e-10
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-10
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		4e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-10
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		5e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		3e-10
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		6e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		8e-10
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		9e-10
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-09
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-09
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-09
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		5e-09
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		3e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-08
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		9e-07
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		1e-06
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		1e-06
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		4e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		7e-06
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		4e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		8e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 194/401 (48%), Gaps = 68/401 (16%)
Query: 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAV 388
           RNR+   S+++  V+F               S DG  +A    D ++K+W+  + GQ  +
Sbjct: 9   RNRLEAHSSSVRGVAF---------------SPDGQTIASASDDKTVKLWN--RNGQ--L 49
Query: 389 SSGLQGENDT------TPREDIIGPNGRKRSYTLYQ----------GHSGPVYSASFSPL 432
              L G + +      +P    I      ++  L+           GHS  V   +FSP 
Sbjct: 50  LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD 109
Query: 433 GDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
           G  I S+S D T++LW+   N  L+    GH+  VW V F+P G   AS+S D+T ++W+
Sbjct: 110 GQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL 551
            +  Q L+ + GH S V  V +  +   IA+ S DKTV+LW+  +G+ ++   GH S + 
Sbjct: 168 RNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 225
Query: 552 SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYR-----FLLLVTNA 606
            +A SPDG+ +AS  +D T+ +W+  +G+ +  L GH+S V  +A+R           + 
Sbjct: 226 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDK 284
Query: 607 YLKISDKVSTGFLFYSLT---IIYFGCA-SCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662
            +K+ ++   G L  +LT      +G A S +G  +AS S D TVKLW+           
Sbjct: 285 TVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN----------- 331
Query: 663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
            ++G    + L+TL   S+ V+ + FS      A+ +  KT
Sbjct: 332 -RNG----QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 367

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 125/260 (48%), Gaps = 26/260 (10%)
Query: 406 GPNGRKR-----------SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA 454
           GP G+KR            Y L  GH  PV    F P+   ++S+S D TI++W  +   
Sbjct: 83  GPLGQKRDPKEWIPRPPEKYAL-SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD 141
Query: 455 NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH 514
                KGH   V D+ F+  G   AS S D T ++W     + +R M GH  +V  V   
Sbjct: 142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 201
Query: 515 INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574
            N ++I + S DKT+++W+V +G CV+ F GHR  +  +  + DG  +AS   D T+ +W
Sbjct: 202 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 575 DLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE 634
            +A+  C   L  H   V  +++       ++Y  IS+  +TG             +   
Sbjct: 262 VVATKECKAELREHRHVVECISW----APESSYSSISE--ATGSETKK--------SGKP 307
Query: 635 GSLLASGSADCTVKLWDVTT 654
           G  L SGS D T+K+WDV+T
Sbjct: 308 GPFLLSGSRDKTIKMWDVST 327

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 33/254 (12%)
Query: 344 FYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
           F   I+ H  G++  + S D +L+     D +LK+WD        VSSG           
Sbjct: 63  FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG----------- 103
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
                    +     +GHS  V+  +F+P  + I+S S D ++R+W  K    L     H
Sbjct: 104 ---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIA 521
           + PV  V FN  G    SSS+D   RIW     Q L+ ++      V  V++  N  YI 
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
             + D T++LWD S G+C++ + GH++    I +      G+++ SG ED  + +W+L +
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 579 GRCVTPLMGHTSCV 592
              V  L GHT  V
Sbjct: 275 KEIVQKLQGHTDVV 288

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 123
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                        + +L+ SGS D +V++WDV T                + LKTLP  S
Sbjct: 124 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 155
Query: 681 TPVYSLQFSRRNLLFAAGA 699
            PV ++ F+R   L  + +
Sbjct: 156 DPVSAVHFNRDGSLIVSSS 174

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 131/272 (48%), Gaps = 17/272 (6%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 28  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 87
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 88  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 148 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 584 PLMGHTSCVWTLAY-----RFLLLVT-NAYLKISDKVSTGFLFYSLT-------IIYFGC 630
            L+   +   +        +++L  T +  LK+ D  S G    + T        I+   
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANF 266
Query: 631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662
           +   G  + SGS D  V +W++ T   V K +
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 139
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                        + +L+ SGS D +V++WDV T                + LKTLP  S
Sbjct: 140 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 171
Query: 681 TPVYSLQFSRRNLLFAAGA 699
            PV ++ F+R   L  + +
Sbjct: 172 DPVSAVHFNRDGSLIVSSS 190

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 131/272 (48%), Gaps = 17/272 (6%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 30  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 89
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 90  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 149
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 150 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 209
Query: 584 PLMGHTSCVWTLAY-----RFLLLVT-NAYLKISDKVSTGFLFYSLT-------IIYFGC 630
            L+   +   +        +++L  T +  LK+ D  S G    + T        I+   
Sbjct: 210 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANF 268
Query: 631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662
           +   G  + SGS D  V +W++ T   V K +
Sbjct: 269 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 43  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 141
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                        + +L+ SGS D +V++WDV T                + LKTLP  S
Sbjct: 142 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 173
Query: 681 TPVYSLQFSRRNLLFAAGA 699
            PV ++ F+R   L  + +
Sbjct: 174 DPVSAVHFNRDGSLIVSSS 192

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 33/254 (12%)
Query: 344 FYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
           F   I+ H  G++  + S D +L+     D +LK+WD        VSSG           
Sbjct: 63  FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG----------- 103
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
                    +     +GHS  V+  +F+P  + I+S S D ++R+W  K    L     H
Sbjct: 104 ---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIA 521
           + PV  V FN  G    SSS+D   RIW     Q L+ ++      V  V++  N  YI 
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
             + D T++LWD S G+C++ + GH++    I +      G+++ SG ED  + +W+L +
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 579 GRCVTPLMGHTSCV 592
              V  L GHT  V
Sbjct: 275 KEIVQKLQGHTDVV 288

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 123
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                        + +L+ SGS D +V++WDV T                + LKTLP  S
Sbjct: 124 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 155
Query: 681 TPVYSLQFSRRNLLFAAGA 699
            PV ++ F+R   L  + +
Sbjct: 156 DPVSAVHFNRDGSLIVSSS 174

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  112 bits (280), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 131/272 (48%), Gaps = 17/272 (6%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 12  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 71
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 72  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 584 PLMGHTSCVWTLAY-----RFLLLVT-NAYLKISDKVSTGFLFYSLT-------IIYFGC 630
            L+   +   +        +++L  T +  LK+ D  S G    + T        I+   
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANF 250
Query: 631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662
           +   G  + SGS D  V +W++ T   V K +
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 123
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                        + +L+ SGS D +V++WDV T                + LKTLP  S
Sbjct: 124 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 155
Query: 681 TPVYSLQFSRRNLLFAAGA 699
            PV ++ F+R   L  + +
Sbjct: 156 DPVSAVHFNRDGSLIVSSS 174

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 131/272 (48%), Gaps = 17/272 (6%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 23  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 82
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 83  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 142
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 143 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Query: 584 PLMGHTSCVWTLAY-----RFLLLVT-NAYLKISDKVSTGFLFYSLT-------IIYFGC 630
            L+   +   +        +++L  T +  LK+ D  S G    + T        I+   
Sbjct: 203 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANF 261
Query: 631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662
           +   G  + SGS D  V +W++ T   V K +
Sbjct: 262 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 96  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 134
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                        + +L+ SGS D +V++WDV T                + LKTLP  S
Sbjct: 135 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 166
Query: 681 TPVYSLQFSRRNLLFAAGA 699
            PV ++ F+R   L  + +
Sbjct: 167 DPVSAVHFNRDGSLIVSSS 185

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
           G++  + S D +L+     D +LK+WD        VSSG                    +
Sbjct: 68  GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 99
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
                +GHS  V+  +F+P  + I+S S D ++R+W  K    L     H+ PV  V FN
Sbjct: 100 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 159
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
             G    SSS+D   RIW     Q L+ ++      V  V++  N  YI   + D T++L
Sbjct: 160 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 219
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
           WD S G+C++ + GH++    I +      G+++ SG ED  + +W+L +   V  L GH
Sbjct: 220 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 279
Query: 589 TSCV 592
           T  V
Sbjct: 280 TDVV 283

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 80  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 118
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                        + +L+ SGS D +V++WDV T                + LKTLP  S
Sbjct: 119 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 150
Query: 681 TPVYSLQFSRRNLLFAAGA 699
            PV ++ F+R   L  + +
Sbjct: 151 DPVSAVHFNRDGSLIVSSS 169

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
           G++  + S D +L+     D +LK+WD        VSSG                    +
Sbjct: 63  GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 94
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
                +GHS  V+  +F+P  + I+S S D ++R+W  K    L     H+ PV  V FN
Sbjct: 95  CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 154
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
             G    SSS+D   RIW     Q L+ ++      V  V++  N  YI   + D T++L
Sbjct: 155 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 214
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
           WD S G+C++ + GH++    I +      G+++ SG ED  + +W+L +   V  L GH
Sbjct: 215 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 274
Query: 589 TSCV 592
           T  V
Sbjct: 275 TDVV 278

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 75  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 113
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                        + +L+ SGS D +V++WDV T                + LKTLP  S
Sbjct: 114 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 145
Query: 681 TPVYSLQFSRRNLLFAAGA 699
            PV ++ F+R   L  + +
Sbjct: 146 DPVSAVHFNRDGSLIVSSS 164

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 33/254 (12%)
Query: 344 FYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
           F   I+ H  G++  + S D +L+     D +LK+WD        VSSG           
Sbjct: 62  FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG----------- 102
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
                    +     +GHS  V+  +F+P  + I+S S D ++R+W  K    L     H
Sbjct: 103 ---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 153
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIA 521
           + PV  V FN  G    SSS+D   RIW     Q L+ ++      V  V++  N  YI 
Sbjct: 154 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 213
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
             + D T++LWD S G+C++ + GH++    I +      G+++ SG ED  + +W+L +
Sbjct: 214 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 273
Query: 579 GRCVTPLMGHTSCV 592
              V  L GHT  V
Sbjct: 274 KEIVQKLQGHTDVV 287

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 84  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 122
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                        + +L+ SGS D +V++WDV T                + LKTLP  S
Sbjct: 123 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 154
Query: 681 TPVYSLQFSRRNLLFAAGA 699
            PV ++ F+R   L  + +
Sbjct: 155 DPVSAVHFNRDGSLIVSSS 173

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
           G++  + S D +L+     D +LK+WD        VSSG                    +
Sbjct: 67  GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 98
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
                +GHS  V+  +F+P  + I+S S D ++R+W  K    L     H+ PV  V FN
Sbjct: 99  CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
             G    SSS+D   RIW     Q L+ +    +  V  V++  N  YI   + D T++L
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
           WD S G+C++ + GH++    I +      G+++ SG ED  + +W+L +   V  L GH
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Query: 589 TSCV 592
           T  V
Sbjct: 279 TDVV 282

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 117
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                        + +L+ SGS D +V++WDV T                + LKTLP  S
Sbjct: 118 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 149
Query: 681 TPVYSLQFSRRNLLFAAGA 699
            PV ++ F+R   L  + +
Sbjct: 150 DPVSAVHFNRDGSLIVSSS 168

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
           G++  + S D +L+     D +LK+WD        VSSG                    +
Sbjct: 67  GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 98
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
                +GHS  V+  +F+P  + I+S S D ++R+W  K    L     H+ PV  V FN
Sbjct: 99  CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
             G    SSS+D   RIW     Q L+ +    +  V  V++  N  YI   + D T++L
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
           WD S G+C++ + GH++    I +      G+++ SG ED  + +W+L +   V  L GH
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Query: 589 TSCV 592
           T  V
Sbjct: 279 TDVV 282

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 117
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                        + +L+ SGS D +V++WDV T                + LKTLP  S
Sbjct: 118 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 149
Query: 681 TPVYSLQFSRRNLLFAAGA 699
            PV ++ F+R   L  + +
Sbjct: 150 DPVSAVHFNRDGSLIVSSS 168

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
           G++  + S D +L+     D +LK+WD        VSSG                    +
Sbjct: 70  GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 101
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
                +GHS  V+  +F+P  + I+S S D ++R+W  K    L     H+ PV  V FN
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-DVDCVRWHINCNYIATGSSDKTVRL 531
             G    SSS+D   RIW     Q L+ +    +  V  V++  N  YI   + D T++L
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
           WD S G+C++ + GH++    I +      G+++ SG ED  + +W+L +   V  L GH
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 589 TSCV 592
           T  V
Sbjct: 282 TDVV 285

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 49/197 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF----------------------- 118
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                      + + +L+ SGS D +V++WDV T                + LKTLP  S
Sbjct: 119 -----------NPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 152
Query: 681 TPVYSLQFSRRNLLFAA 697
            PV ++ F+R   L  +
Sbjct: 153 DPVSAVHFNRDGSLIVS 169

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
           G++  + S D +L+     D +LK+WD        VSSG                    +
Sbjct: 70  GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 101
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
                +GHS  V+  +F+P  + I+S S D ++R+W  K    L     H+ PV  V FN
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-DVDCVRWHINCNYIATGSSDKTVRL 531
             G    SSS+D   RIW     Q L+ +    +  V  V++  N  YI   + D T++L
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
           WD S G+C++ + GH++    I +      G+++ SG ED  + +W+L +   V  L GH
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 589 TSCV 592
           T  V
Sbjct: 282 TDVV 285

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 49/197 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF----------------------- 118
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                      + + +L+ SGS D +V++WDV T                + LKTLP  S
Sbjct: 119 -----------NPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 152
Query: 681 TPVYSLQFSRRNLLFAA 697
            PV ++ F+R   L  +
Sbjct: 153 DPVSAVHFNRDGSLIVS 169

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
           G++  + S D +L+     D +LK+WD        VSSG                    +
Sbjct: 66  GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 97
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
                +GHS  V+  +F+P  + I+S S D ++R+W  K    L     H+ PV  V FN
Sbjct: 98  CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 157
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
             G    SSS+D   RIW     Q L+ +    +  V  V++  N  YI   + D T++L
Sbjct: 158 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 217
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
           WD S G+C++ + GH++    I +      G+++ SG ED  + +W+L +   V  L GH
Sbjct: 218 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 277
Query: 589 TSCV 592
           T  V
Sbjct: 278 TDVV 281

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 78  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 116
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                        + +L+ SGS D +V++WDV T                + LKTLP  S
Sbjct: 117 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 148
Query: 681 TPVYSLQFSRRNLLFAAGA 699
            PV ++ F+R   L  + +
Sbjct: 149 DPVSAVHFNRDGSLIVSSS 167

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 33/254 (12%)
Query: 344 FYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
           F   I+ H  G++  + S D +L+     D +LK+WD        VSSG           
Sbjct: 60  FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG----------- 100
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
                    +     +GHS  V+  +F+P  + I+S S D ++R+W  K    L     H
Sbjct: 101 ---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-DVDCVRWHINCNYIA 521
           + PV  V FN  G    SSS+D   RIW     Q L+ +    +  V  V++  N  YI 
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
             + D T++LWD S G+C++ + GH++    I +      G+++ SG ED  + +W+L +
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 579 GRCVTPLMGHTSCV 592
              V  L GHT  V
Sbjct: 272 KEIVQKLQGHTDVV 285

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 92/168 (54%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
           GH+  V S  FSP G+++ +SSAD  I++W            GH   + DV ++   +  
Sbjct: 24  GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
            S+S D+T +IW +   + L+ + GH + V C  ++   N I +GS D++VR+WDV +G+
Sbjct: 84  VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Query: 539 CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586
           C++    H   + ++  + DG  + S   DG   +WD ASG+C+  L+
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 49/197 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A  S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF----------------------- 118
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                      + + +L+ SGS D +V++WDV T                + LKTLP  S
Sbjct: 119 -----------NPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 152
Query: 681 TPVYSLQFSRRNLLFAA 697
            PV ++ F+R   L  +
Sbjct: 153 DPVSAVHFNRDGSLIVS 169

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
           G++  + S D +L+     D +LK+WD        VSSG                    +
Sbjct: 70  GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 101
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
                +GHS  V+  +F+P  + I+S S D ++R+W  K    L     H+ PV  V FN
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
             G    SSS+D   RIW     Q L+ +    +  V  V++  N  YI   + D T++L
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
           WD S G+C++ + GH++    I +      G+++ SG ED  + +W+L +   V  L GH
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 589 TSCV 592
           T  V
Sbjct: 282 TDVV 285

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 120
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                        + +L+ SGS D +V++WDV T                  LKTLP  S
Sbjct: 121 -------------QSNLIVSGSFDESVRIWDVKTG---------------MCLKTLPAHS 152
Query: 681 TPVYSLQFSRRNLLFAAGA 699
            PV ++ F+R   L  + +
Sbjct: 153 DPVSAVHFNRDGSLIVSSS 171

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
           G++  + S D +L+     D +LK+WD        VSSG                    +
Sbjct: 70  GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 101
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
                +GHS  V+  +F+P  + I+S S D ++R+W  K    L     H+ PV  V FN
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
             G    SSS+D   RIW     Q L+ +    +  V  V++  N  YI   + D  ++L
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKL 221
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
           WD S G+C++ + GH++    I +      G+++ SG ED  + +W+L +   V  L GH
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 589 TSCV 592
           T  V
Sbjct: 282 TDVV 285

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 97/201 (48%), Gaps = 35/201 (17%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
           GH   V  V+F+P G + ASSS D+  +IW     +  + ++GH   +  V W  + N +
Sbjct: 24  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580
            + S DKT+++WDVSSG+C++   GH + +     +P    + SG  D ++ +WD+ +G 
Sbjct: 84  VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM 143
Query: 581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS 640
           C+  L  H                      SD VS          ++F   + +GSL+ S
Sbjct: 144 CLKTLPAH----------------------SDPVSA---------VHF---NRDGSLIVS 169
Query: 641 GSADCTVKLWDVTTSTKVLKT 661
            S D   ++WD T S + LKT
Sbjct: 170 SSYDGLCRIWD-TASGQCLKT 189

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   +                       
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 120
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
                        + +L+ SGS D +V++WDV T                  LKTLP  S
Sbjct: 121 -------------QSNLIVSGSFDESVRIWDVKTG---------------MCLKTLPAHS 152
Query: 681 TPVYSLQFSRRNLLFAAGA 699
            PV ++ F+R   L  + +
Sbjct: 153 DPVSAVHFNRDGSLIVSSS 171

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 116/266 (43%), Gaps = 34/266 (12%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
           GHS  V     S  G F LS S D  +RLW      +   + GH   V  V F+      
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAG---HLSDVDCVRWHINC--NYIATGSSDKTVRLWD 533
            S+S DRT ++W+        I  G   H   V CVR+  N     I + S DKTV++W+
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR------------- 580
           +S+ +      GH   + ++A+SPDG   ASG +DG +++WDLA G+             
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
Query: 581 -CVTP-------LMGHTSCVWTLAYRFLLLVTNAYLKISDKVS--TGFLFYSLTIIYFGC 630
            C +P          H   +W L  + ++      LK   + +  +G       +IY  C
Sbjct: 608 LCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY--C 665
Query: 631 A----SCEGSLLASGSADCTVKLWDV 652
                S +GS L SG  D  +++W +
Sbjct: 666 TSLNWSADGSTLFSGYTDGVIRVWGI 691

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 92/215 (42%), Gaps = 36/215 (16%)
Query: 478 FASSSHDRTARIWSMDRIQPL-----RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLW 532
             S+S D++  +W + +         R + GH   V+ V    +  +  +GS D  +RLW
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 533 DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM----GH 588
           D+++G   R F+GH   +LS+A S D R + S   D TI +W+   G C   +     GH
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTISEGGEGH 516
Query: 589 ---TSCV---------------WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC 630
               SCV               W    +   L +N  L+ +    TG   Y  T+     
Sbjct: 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL-SNCKLRSTLAGHTG---YVSTV----A 568
Query: 631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS 665
            S +GSL ASG  D  V LWD+    K+   E  S
Sbjct: 569 VSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 603

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 35/266 (13%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           ++GHS  V   + +  G + LS+S D T+RLW          + GH   V  V  + +  
Sbjct: 61  FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
              S S D+T ++W++            D +  +R++    +D D V        I +  
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 173
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
           +DK V+ W+++  +    FIGH S I +L  SPDG  +AS  +DG IM+W+LA+ + +  
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 585 LMGHTSCVWTLAY---RFLLLVTNAY-LKI--------SDKVSTGFLFYSLTIIYFGCA- 631
           L      V++LA+   R+ L    A  +K+         D +   F  YS        + 
Sbjct: 234 LSAQDE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSL 292
Query: 632 --SCEGSLLASGSADCTVKLWDVTTS 655
             S +G  L +G  D  +++W V T+
Sbjct: 293 AWSADGQTLFAGYTDNVIRVWQVMTA 318

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 35/266 (13%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           ++GHS  V   + +  G + LS+S D T+RLW          + GH   V  V  + +  
Sbjct: 61  FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
              S S D+T ++W++            D +  +R++    +D D V        I +  
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 173
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
           +DK V+ W+++  +    FIGH S I +L  SPDG  +AS  +DG IM+W+LA+ + +  
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 585 LMGHTSCVWTLAY---RFLLLVTNAY-LKI--------SDKVSTGFLFYSLTIIYFGCA- 631
           L      V++LA+   R+ L    A  +K+         D +   F  YS        + 
Sbjct: 234 LSAQDE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292
Query: 632 --SCEGSLLASGSADCTVKLWDVTTS 655
             S +G  L +G  D  +++W V T+
Sbjct: 293 AWSADGQTLFAGYTDNVIRVWQVMTA 318

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 35/266 (13%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           ++GHS  V   + +  G + LS+S D T+RLW          + GH   V  V  + +  
Sbjct: 61  FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
              S S D+T ++W++            D +  +R++    +D D V        I +  
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 173
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
           +DK V+ W+++  +    FIGH S I +L  SPDG  +AS  +DG IM+W+LA+ + +  
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 585 LMGHTSCVWTLAY---RFLLLVTNAY-LKI--------SDKVSTGFLFYSLTIIYFGCA- 631
           L      V++LA+   R+ L    A  +K+         D +   F  YS        + 
Sbjct: 234 LSAQDE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292
Query: 632 --SCEGSLLASGSADCTVKLWDVTTS 655
             S +G  L +G  D  +++W V T+
Sbjct: 293 AWSADGQTLFAGYTDNVIRVWQVMTA 318

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 35/266 (13%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           ++GHS  V   + +  G + LS+S D T+RLW          + GH   V  V  + +  
Sbjct: 55  FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 114
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
              S S D+T ++W++            D +  +R++    +D D V        I +  
Sbjct: 115 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 167
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
           +DK V+ W+++  +    FIGH S I +L  SPDG  +AS  +DG IM+W+LA+ + +  
Sbjct: 168 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 227
Query: 585 LMGHTSCVWTLAY---RFLLLVTNAY-LKI--------SDKVSTGFLFYSLTIIYFGCA- 631
           L      V++LA+   R+ L    A  +K+         D +   F  YS        + 
Sbjct: 228 LSAQDE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 286
Query: 632 --SCEGSLLASGSADCTVKLWDVTTS 655
             S +G  L +G  D  +++W V T+
Sbjct: 287 AWSADGQTLFAGYTDNVIRVWQVMTA 312

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 150/357 (42%), Gaps = 71/357 (19%)
Query: 363 GSLVAGGFSDSSLKVWDMAKLGQ--QAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420
           G+ +  G  D++LKVW  A  G+  + +     G   +  R++II      R+  ++   
Sbjct: 129 GNRIVSGSDDNTLKVWS-AVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 187
Query: 421 SGPVYSASFSPLGDF---------ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF 471
           +G      +               ++S S D T+R+W  +    L    GH   V  VQ+
Sbjct: 188 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
           +  G    S ++D   ++W  +    L  + GH + V  ++   +  ++ +GS D ++R+
Sbjct: 248 D--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRV 303
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG---H 588
           WDV +G C+    GH+S  L+  M      + SG+ D T+ +WD+ +G+C+  L G   H
Sbjct: 304 WDVETGNCIHTLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361
Query: 589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVK 648
            S V  L +    ++T+                                    S D TVK
Sbjct: 362 QSAVTCLQFNKNFVITS------------------------------------SDDGTVK 385
Query: 649 LWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP--VYSLQFSRRNLLFAAGALSKT 703
           LWD       LKT E      +R+L TL +  +   V+ ++ S   L+ A G+ + T
Sbjct: 386 LWD-------LKTGE-----FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 15/123 (12%)
Query: 541 RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFL 600
           ++  GH   +++  +   G  + SG +D T+ +W   +G+C+  L+GHT  VW+   R  
Sbjct: 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 170
Query: 601 LLV---TNAYLKISDKVSTGFLFYSLTIIYFG------CASCEGSLLASGSADCTVKLWD 651
           +++   T+  LK+ +   TG   ++L    +G      C       + SGS D T+++WD
Sbjct: 171 IIISGSTDRTLKVWN-AETGECIHTL----YGHTSTVRCMHLHEKRVVSGSRDATLRVWD 225
Query: 652 VTT 654
           + T
Sbjct: 226 IET 228

>pdb|2J4B|A Chain A, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N- Terminal Domain Length = 138

Iteration: 1
 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Query: 71  YSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLR 130
           Y  L++W   SLDL+K++LL +LYP+FIH + DL+ +    EA+ FF  +R DH      
Sbjct: 12  YVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDH-YNKSE 70
Query: 131 DLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERI 190
           ++++ E + +  H+ E  FA++ ++SK ++ + +Y+++LL+ +L +   T +L I+N+ +
Sbjct: 71  EIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHL 130
Query: 191 NFQVSPG 197
           + +V  G
Sbjct: 131 DIKVYVG 137

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 130/285 (45%), Gaps = 40/285 (14%)
Query: 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG---------------LQG 394
           T  G+ C  +  D   +  G  D+++K+WD   L  + + +G               + G
Sbjct: 132 TSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG 189
Query: 395 ENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA 454
            +D+T R  +   N  +   TL   H   V    F+     +++ S D +I +W      
Sbjct: 190 SSDSTVR--VWDVNTGEMLNTLIH-HCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPT 244
Query: 455 NLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV 511
           ++   +   GH   V  V F+ +  Y  S+S DRT ++W+    + +R + GH   + C+
Sbjct: 245 DITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 302
Query: 512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571
           ++      + +GSSD T+RLWD+  G C+R+  GH  ++  +    D + + SG  DG I
Sbjct: 303 QYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKI 358
Query: 572 MMWDL---------ASGRCVTPLMGHTSCVWTLAYRFLLLVTNAY 607
            +WDL         A   C+  L+ H+  V+ L +    +V++++
Sbjct: 359 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSH 403

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS 525
           V+ +Q++ Q     S   D T +IW  + ++  RI+ GH   V C+++  +   I TGSS
Sbjct: 136 VYCLQYDDQK--IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSS 191
Query: 526 DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT-- 583
           D TVR+WDV++GE +   I H   +L L    +   M +  +D +I +WD+AS   +T  
Sbjct: 192 DSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLR 249
Query: 584 -PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI----IYFGCASCEGSLL 638
             L+GH + V  + +    +V+ +  +     +T    +  T+        C      L+
Sbjct: 250 RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLV 309
Query: 639 ASGSADCTVKLWDVTTST--KVLKTEEK 664
            SGS+D T++LWD+      +VL+  E+
Sbjct: 310 VSGSSDNTIRLWDIECGACLRVLEGHEE 337

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 119/266 (44%), Gaps = 35/266 (13%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           ++GHS  V   + +  G + LS+S D T+RLW          + GH   V  V  + +  
Sbjct: 61  FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKAS 120
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
              S S D+T ++W++            D +  +R++    +D D V        I +  
Sbjct: 121 XIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 173
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
           +DK V+ W+++  +    FIGH S I +L  SPDG  +AS  +DG I +W+LA+ +    
Sbjct: 174 NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYT 233
Query: 585 LMGHTSCVWTLAY---RFLLLVTNAY-LKI--------SDKVSTGFLFYSLTIIYFGCA- 631
           L      V++LA+   R+ L    A  +K+         D +   F  YS        + 
Sbjct: 234 LSAQDE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292
Query: 632 --SCEGSLLASGSADCTVKLWDVTTS 655
             S +G  L +G  D  +++W V T+
Sbjct: 293 AWSADGQTLFAGYTDNVIRVWQVXTA 318

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 118/261 (45%), Gaps = 35/261 (13%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           ++GHS  V   + +  G + LS+S D T+RLW          + GH   V  V  + +  
Sbjct: 61  FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
              S S D+T ++W++            D +  +R++    +D D V        I +  
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 173
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
           +DK V+ W+++  +    FIGH S I +L  SPDG  +AS  +DG IM+W+LA+ + +  
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 585 LMGHTSCVWTLAY---RFLLLVTNAY-LKI--------SDKVSTGFLFYSLTIIYFGCA- 631
           L      V++LA+   R+ L    A  +K+         D +   F  YS        + 
Sbjct: 234 LSAQDE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292
Query: 632 --SCEGSLLASGSADCTVKLW 650
             S +G  L +G  D  +++W
Sbjct: 293 AWSADGQTLFAGYTDNVIRVW 313

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 13/192 (6%)
Query: 406 GPNGRKRS----YTL----YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV 457
           GPN  + S    Y L     +GHS  V   + S  G+F +S+S D ++RLW+ +      
Sbjct: 44  GPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQY 103
Query: 458 CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWH- 514
            + GH   V  V F+P      S   D   R+W++ + + +  ++   H   V CVR+  
Sbjct: 104 KFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSP 162
Query: 515 -INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
            ++   I +G  D  V++WD+++G  V    GH + + S+ +SPDG   AS D+DG   +
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL 222
Query: 574 WDLASGRCVTPL 585
           WDL  G  ++ +
Sbjct: 223 WDLTKGEALSEM 234

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556
           P R + GH + V  V    N N+  + S D ++RLW++ +G+C   F+GH   +LS+A S
Sbjct: 59  PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRF------LLLVTNAY--- 607
           PD R + SG  D  + +W++  G C+  L       W    RF       ++V+  +   
Sbjct: 119 PDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 608 LKISDKVSTGFLFYSL----TIIYFGCASCEGSLLASGSADCTVKLWDVT 653
           +K+ D ++TG L   L      +     S +GSL AS   D   +LWD+T
Sbjct: 178 VKVWD-LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 107/265 (40%), Gaps = 43/265 (16%)
Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH 483
           + S  FSP G F+ + + D  IR+W  +    ++  +GH   ++ + + P G    S S 
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF 543
           DRT RIW +   Q    ++             +  YIA GS D+ VR+WD  +G  V   
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 544 -------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA------------SGRCVTP 584
                   GH+  + S+  + DG+ + SG  D ++ +W+L             SG C   
Sbjct: 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 305
Query: 585 LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFY-------------------SLTI 625
            +GH   V ++A        N    +S     G LF+                   S+ +
Sbjct: 306 YIGHKDFVLSVA-----TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 360
Query: 626 IYFGCASCEGSLLASGSADCTVKLW 650
                   E ++ A+GS DC  ++W
Sbjct: 361 ANGSSLGPEYNVFATGSGDCKARIW 385

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 46/187 (24%)
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
           ++ATG+ D+ +R+WD+ + + V I  GH   I SL   P G  + SG  D T+ +WDL +
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 579 GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL 638
           G+C                       +  L I D V+T              +  +G  +
Sbjct: 197 GQC-----------------------SLTLSIEDGVTT-----------VAVSPGDGKYI 222
Query: 639 ASGSADCTVKLWDVTTSTKV--LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA 696
           A+GS D  V++WD  T   V  L +E +SGT    S          VYS+ F+R      
Sbjct: 223 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS----------VYSVVFTRDGQSVV 272
Query: 697 AGALSKT 703
           +G+L ++
Sbjct: 273 SGSLDRS 279

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/380 (20%), Positives = 146/380 (38%), Gaps = 80/380 (21%)
Query: 346  TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQ-QAVSSGLQGENDTTPRED- 403
            T     N +N    S D  L+A   +D +L++WD+    + ++++      +   P ED 
Sbjct: 745  TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 804
Query: 404  ----------------IIGPNGRKRSY---------TLYQGHSGPVYSASFSPLGDFILS 438
                            I+    +   +          ++ GH   +    FSP     + 
Sbjct: 805  EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 864
Query: 439  SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW-------- 490
            + +   + LW+      +   +GH   V  V F+P G  F ++S D+T R+W        
Sbjct: 865  ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 924
Query: 491  ---------------------SMDRIQPLRIMAGHLSDVD----------CVRWHINCNY 519
                                 ++D I+ L+++AG    +D          C+  H+   Y
Sbjct: 925  SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL--EY 982
Query: 520  IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
            +A G  D  +++ ++ +       +GH+  +  +  + DG+ + S  ED  I +W+  +G
Sbjct: 983  VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1042
Query: 580  RCVTPLMGHTSCVWTLAY----RFLLLVTNAYLK----ISDKVSTGFLFYSLTIIYFGCA 631
              V  L  H   V         R L    +  +K    I+ ++   F  +  T++   CA
Sbjct: 1043 DYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL--SCA 1099
Query: 632  -SCEGSLLASGSADCTVKLW 650
             S + +  +S SAD T K+W
Sbjct: 1100 ISSDATKFSSTSADKTAKIW 1119

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 36/207 (17%)
Query: 453 NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
           N + +  + H   V+   F+  G   AS   D+T +++  +  + L  +  H  +V C  
Sbjct: 612 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 671
Query: 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY--MASGDEDGT 570
           +  + +YIAT S+DK V++WD ++G+ V  +  H   +     +    +  +A+G  D  
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC 630
           + +WDL    C   + GHT+ V    +                                 
Sbjct: 732 LKLWDLNQKECRNTMFGHTNSVNHCRF--------------------------------- 758
Query: 631 ASCEGSLLASGSADCTVKLWDVTTSTK 657
            S +  LLAS SAD T++LWDV ++ +
Sbjct: 759 -SPDDELLASCSADGTLRLWDVRSANE 784

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/380 (20%), Positives = 146/380 (38%), Gaps = 80/380 (21%)
Query: 346  TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQ-QAVSSGLQGENDTTPRED- 403
            T     N +N    S D  L+A   +D +L++WD+    + ++++      +   P ED 
Sbjct: 738  TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797
Query: 404  ----------------IIGPNGRKRSY---------TLYQGHSGPVYSASFSPLGDFILS 438
                            I+    +   +          ++ GH   +    FSP     + 
Sbjct: 798  EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857
Query: 439  SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW-------- 490
            + +   + LW+      +   +GH   V  V F+P G  F ++S D+T R+W        
Sbjct: 858  ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917
Query: 491  ---------------------SMDRIQPLRIMAGHLSDVD----------CVRWHINCNY 519
                                 ++D I+ L+++AG    +D          C+  H+   Y
Sbjct: 918  SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL--EY 975
Query: 520  IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
            +A G  D  +++ ++ +       +GH+  +  +  + DG+ + S  ED  I +W+  +G
Sbjct: 976  VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035
Query: 580  RCVTPLMGHTSCVWTLAY----RFLLLVTNAYLK----ISDKVSTGFLFYSLTIIYFGCA 631
              V  L  H   V         R L    +  +K    I+ ++   F  +  T++   CA
Sbjct: 1036 DYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL--SCA 1092
Query: 632  -SCEGSLLASGSADCTVKLW 650
             S + +  +S SAD T K+W
Sbjct: 1093 ISSDATKFSSTSADKTAKIW 1112

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 36/207 (17%)
Query: 453 NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
           N + +  + H   V+   F+  G   AS   D+T +++  +  + L  +  H  +V C  
Sbjct: 605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 664
Query: 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY--MASGDEDGT 570
           +  + +YIAT S+DK V++WD ++G+ V  +  H   +     +    +  +A+G  D  
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC 630
           + +WDL    C   + GHT+ V    +                                 
Sbjct: 725 LKLWDLNQKECRNTMFGHTNSVNHCRF--------------------------------- 751
Query: 631 ASCEGSLLASGSADCTVKLWDVTTSTK 657
            S +  LLAS SAD T++LWDV ++ +
Sbjct: 752 -SPDDELLASCSADGTLRLWDVRSANE 777

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 428 SFSPLGDFILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNPQGHYFASSSHD 484
           +++P G  + S   D  IR+W T+ ++ +   V  +GH   V  V ++P G+Y AS+S D
Sbjct: 23  AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 485 RTARIW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---EC 539
            T  IW  + D  + +  + GH ++V  V W  + N +AT S DK+V +W+V      EC
Sbjct: 83  ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142
Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW--DLASGRCVTPLMGHTSCVWTLAY 597
           V +   H   +  +   P    +AS   D T+ ++  +     C   L GH S VW+LA+
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 89/205 (43%), Gaps = 22/205 (10%)
Query: 466 VWDVQFNPQGHYFASSSHDRTARIWSMD---RIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
            W + +NP G   AS   DR  RIW  +    I    +  GH   V  V W    NY+A+
Sbjct: 19  CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLAS 78
Query: 523 GSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG- 579
            S D T  +W  +    ECV    GH + + S+A +P G  +A+   D ++ +W++    
Sbjct: 79  ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138
Query: 580 --RCVTPLMGHTS----CVWTLAYRFLLLVTNAY---LKI-----SDKVSTGFLFYSLTI 625
              CV+ L  HT      VW  +    LL + +Y   +K+      D V    L    + 
Sbjct: 139 EYECVSVLNSHTQDVKHVVWHPSQE--LLASASYDDTVKLYREEEDDWVCCATLEGHEST 196
Query: 626 IYFGCASCEGSLLASGSADCTVKLW 650
           ++       G  LAS S D TV++W
Sbjct: 197 VWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 5/185 (2%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG 475
           ++ H   + S +  P   ++LS S D T++LW+ + N  L   ++GH + V  V FNP+ 
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 476 -HYFASSSHDRTARIWSMDRIQP-LRIMAGHLSDVDCVRWHI--NCNYIATGSSDKTVRL 531
              FAS   DRT ++WS+ +  P   +  G    V+ V ++   +  Y+ T S D T+++
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC 591
           WD  +  CV    GH S +      P    + SG EDGT+ +W+ ++ +    L      
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Query: 592 VWTLA 596
            W +A
Sbjct: 273 SWCIA 277

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 116/275 (42%), Gaps = 15/275 (5%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           +   S  V    F P   ++L++     + +W+ +    +   +    PV   +F  + +
Sbjct: 9   FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           +    S D   R+++ +  + +     H   +  +  H    Y+ +GS D TV+LW+  +
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 537 GECV-RIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVW 593
              + + F GH   ++ +A +P D    ASG  D T+ +W L  S    T   G    V 
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 594 TLAYRFL----LLVT---NAYLKISD---KVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643
            + Y  L     ++T   +  +KI D   K     L   ++ + F        ++ SGS 
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 678
           D T+K+W+ +T  KV KT    G  R   + T PT
Sbjct: 249 DGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281

>pdb|2J49|A Chain A, Crystal Structure Of Yeast Taf5 N-Terminal Domain Length = 148

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 62  DGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFR 121
           + P  Y   YS L++W  SSL++YK EL +++YP+FI+ F++LVAK  +  AR FF+ F 
Sbjct: 5   NAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVY-ARRFFDRFS 63
Query: 122 EDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS-- 179
            D +  H  ++ +L  V S  H++E E A + +  K  I + + +  LLL +L++ +S  
Sbjct: 64  PDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIG 123
Query: 180 -TKMLGIINERIN 191
            + ++ +IN+ ++
Sbjct: 124 GSLIISVINQHLD 136

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG 475
           ++ H   + S +  P   ++LS S D T++LW+ + N  L   ++GH + V  V FNP+ 
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 476 -HYFASSSHDRTARIWSMDRIQP-LRIMAGHLSDVDCVRWHI--NCNYIATGSSDKTVRL 531
              FAS   DRT ++WS+ +  P   +  G    V+ V ++   +  Y+ T S D T+++
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
           WD  +  CV    GH S +      P    + SG EDGT+ +W+
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 15/275 (5%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           +   S  V    F P   ++L++     + LW+ +    +   +    PV   +F  + +
Sbjct: 9   FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           +    S D   R+++ +  + +     H   +  +  H    Y+ +GS D TV+LW+  +
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 537 GECV-RIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVW 593
              + + F GH   ++ +A +P D    ASG  D T+ +W L  S    T   G    V 
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 594 TLAYRFL----LLVT---NAYLKISD---KVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643
            + Y  L     ++T   +  +KI D   K     L   ++ + F        ++ SGS 
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 678
           D T+K+W+ +T  KV KT    G  R   + T PT
Sbjct: 249 DGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG 475
           ++ H   + S +  P   ++LS S D T++LW+ + N  L   ++GH + V  V FNP+ 
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 476 -HYFASSSHDRTARIWSMDRIQP-LRIMAGHLSDVDCVRWHI--NCNYIATGSSDKTVRL 531
              FAS   DRT ++WS+ +  P   +  G    V+ V ++   +  Y+ T S D T+++
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
           WD  +  CV    GH S +      P    + SG EDGT+ +W+
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 15/275 (5%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           +   S  V    F P   ++L++     + LW+ +    +   +    PV   +F  + +
Sbjct: 9   FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           +    S D   R+++ +  + +     H   +  +  H    Y+ +GS D TV+LW+  +
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 537 GECV-RIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVW 593
              + + F GH   ++ +A +P D    ASG  D T+ +W L  S    T   G    V 
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 594 TLAYRFL----LLVT---NAYLKISD---KVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643
            + Y  L     ++T   +  +KI D   K     L   ++ + F        ++ SGS 
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 678
           D T+K+W+ +T  KV KT    G  R   + T PT
Sbjct: 249 DGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 5/185 (2%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG 475
           ++ H   + S +  P   ++LS S D T++LW+ + N  L   ++GH + V  V FNP+ 
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 476 -HYFASSSHDRTARIWSMDRIQP-LRIMAGHLSDVDCVRWHI--NCNYIATGSSDKTVRL 531
              FAS   DRT ++WS+ +  P   +  G    V+ V ++   +  Y+ T S D T+++
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC 591
           WD  +  CV    GH S +      P    + SG EDGT+ +W+ ++ +    L      
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Query: 592 VWTLA 596
            W +A
Sbjct: 273 SWCIA 277

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 15/275 (5%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           +   S  V    F P   ++L++     + LW+ +    +   +    PV   +F  + +
Sbjct: 9   FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           +    S D   R+++ +  + +     H   +  +  H    Y+ +GS D TV+LW+  +
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 537 GECV-RIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVW 593
              + + F GH   ++ +A +P D    ASG  D T+ +W L  S    T   G    V 
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 594 TLAYRFL----LLVT---NAYLKISD---KVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643
            + Y  L     ++T   +  +KI D   K     L   ++ + F        ++ SGS 
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 678
           D T+K+W+ +T  KV KT    G  R   + T PT
Sbjct: 249 DGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 3/173 (1%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           +GHS  V     S  G F LS S D T+RLW          + GH   V  V F+     
Sbjct: 83  RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ 142
Query: 478 FASSSHDRTARIWSMDRIQPLRIM-AGHLSDVDCVRWHINCN--YIATGSSDKTVRLWDV 534
             S S D+T ++W+   +    +    H   V CVR+  N +   I +   DK V++W++
Sbjct: 143 IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587
           ++ +     IGH   + ++ +SPDG   ASG +DG  M+WDL  G+ +  L G
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 98/218 (44%), Gaps = 33/218 (15%)
Query: 460 KGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQ-----PLRIMAGHLSDVDCVRW 513
           KGHN  V  +   PQ      S+S D+T  +W + R +     P R + GH   V  V  
Sbjct: 35  KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI 94
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
             +  +  +GS D T+RLWD+++G   R F+GH   +LS+A S D R + SG  D TI +
Sbjct: 95  SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL 154
Query: 574 WDLASGRCVTPLMGHTSCVWTLAYRF-------------------LLLVTNAYLKISDKV 614
           W+   G C   +   +   W    RF                   +  + N  LK +   
Sbjct: 155 WNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 213
Query: 615 STGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652
            TG+L  ++T+      S +GSL ASG  D    LWD+
Sbjct: 214 HTGYL-NTVTV------SPDGSLCASGGKDGQAMLWDL 244

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 40/171 (23%)
Query: 518 NYIATGSSDKTVRLWDVSSGEC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
           + I + S DKT+ +W ++  E       R   GH   +  + +S DG++  SG  DGT+ 
Sbjct: 52  DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS 632
           +WDL +G      +GHT  V ++A+                                  S
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAF----------------------------------S 137
Query: 633 CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 683
            +   + SGS D T+KLW+     K    +++S +  +  ++  P  S P+
Sbjct: 138 SDNRQIVSGSRDKTIKLWNTLGVCK-YTVQDESHSEWVSCVRFSPNSSNPI 187

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 3/173 (1%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           +GHS  V     S  G F LS S D T+RLW          + GH   V  V F+     
Sbjct: 60  RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ 119
Query: 478 FASSSHDRTARIWSMDRIQPLRIM-AGHLSDVDCVRWHINCN--YIATGSSDKTVRLWDV 534
             S S D+T ++W+   +    +    H   V CVR+  N +   I +   DK V++W++
Sbjct: 120 IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587
           ++ +     IGH   + ++ +SPDG   ASG +DG  M+WDL  G+ +  L G
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 98/218 (44%), Gaps = 33/218 (15%)
Query: 460 KGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQ-----PLRIMAGHLSDVDCVRW 513
           KGHN  V  +   PQ      S+S D+T  +W + R +     P R + GH   V  V  
Sbjct: 12  KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI 71
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
             +  +  +GS D T+RLWD+++G   R F+GH   +LS+A S D R + SG  D TI +
Sbjct: 72  SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL 131
Query: 574 WDLASGRCVTPLMGHTSCVWTLAYRF-------------------LLLVTNAYLKISDKV 614
           W+   G C   +   +   W    RF                   +  + N  LK +   
Sbjct: 132 WNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 190
Query: 615 STGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652
            TG+L  ++T+      S +GSL ASG  D    LWD+
Sbjct: 191 HTGYL-NTVTV------SPDGSLCASGGKDGQAMLWDL 221

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 40/171 (23%)
Query: 518 NYIATGSSDKTVRLWDVSSGEC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
           + I + S DKT+ +W ++  E       R   GH   +  + +S DG++  SG  DGT+ 
Sbjct: 29  DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS 632
           +WDL +G      +GHT  V ++A+                                  S
Sbjct: 89  LWDLTTGTTTRRFVGHTKDVLSVAF----------------------------------S 114
Query: 633 CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 683
            +   + SGS D T+KLW+     K    +++S +  +  ++  P  S P+
Sbjct: 115 SDNRQIVSGSRDKTIKLWNTLGVCK-YTVQDESHSEWVSCVRFSPNSSNPI 164

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 36/250 (14%)
Query: 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493
           +++++ + D  IR++ +     L+   GH+  VW +++   G    S S DRT R+W + 
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIK 191
Query: 494 RIQPLRIMAGHLSDVDC--VRWHINCNYIATGSSDKTVRLWDV-------SSGE------ 538
           +     +  GH S V C  +  + N  YI TGS D T+ +W +         GE      
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 539 ----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
                      V +  GH + + +  +S  G  + SG  D T+++WD+A  +C+  L GH
Sbjct: 252 VFHTPEENPYFVGVLRGHXASVRT--VSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGH 309
Query: 589 TSCVWTLAY-----RFLLLVTNAYLKISDKVSTGFLFYSLT--IIYFGCASCEGSLLASG 641
           T  +++  Y     R +    +  ++I D +  G L Y+L       G        L S 
Sbjct: 310 TDRIYSTIYDHERKRCISASXDTTIRIWD-LENGELXYTLQGHTALVGLLRLSDKFLVSA 368
Query: 642 SADCTVKLWD 651
           +AD +++ WD
Sbjct: 369 AADGSIRGWD 378

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 28/213 (13%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGH 476
           GH G V++  ++  G  ++S S D T+R+W  K       ++GHN  V   D+       
Sbjct: 160 GHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218
Query: 477 YFASSSHDRTARIWSM-----------DRIQPL------------RIMAGHLSDVDCVRW 513
           Y  + S D T  +W +           +   PL             ++ GH++ V  V  
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG 278
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
           H   N + +GS D T+ +WDV+  +C+ I  GH   I S     + +   S   D TI +
Sbjct: 279 H--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 574 WDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNA 606
           WDL +G  +  L GHT+ V  L      LV+ A
Sbjct: 337 WDLENGELMYTLQGHTALVGLLRLSDKFLVSAA 369

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 36/250 (14%)
Query: 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493
           +++++ + D  IR++ +     L+   GH+  VW +++   G    S S DRT R+W + 
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIK 191
Query: 494 RIQPLRIMAGHLSDVDC--VRWHINCNYIATGSSDKTVRLWDV-------SSGE------ 538
           +     +  GH S V C  +  + N  YI TGS D T+ +W +         GE      
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 539 ----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
                      V +  GH + + +  +S  G  + SG  D T+++WD+A  +C+  L GH
Sbjct: 252 VFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309
Query: 589 TSCVWTLAY-----RFLLLVTNAYLKISDKVSTGFLFYSLT--IIYFGCASCEGSLLASG 641
           T  +++  Y     R +    +  ++I D +  G L Y+L       G        L S 
Sbjct: 310 TDRIYSTIYDHERKRCISASMDTTIRIWD-LENGELMYTLQGHTALVGLLRLSDKFLVSA 368
Query: 642 SADCTVKLWD 651
           +AD +++ WD
Sbjct: 369 AADGSIRGWD 378

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 9/191 (4%)
Query: 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDV 469
           +K+S  +   H+  + + SF+     IL++S D T  LW  +    L  + GH   V  +
Sbjct: 146 KKKSVAM---HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCL 202
Query: 470 QFNPQ--GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK 527
              P   G+ F S   D+ A +W M   Q ++    H SDV+ VR++ + +  A+GS D 
Sbjct: 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDA 262
Query: 528 TVRLWDVSSGECVRIFIGHRSMIL---SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
           T RL+D+ +   V I+    S+I    S+  S  GR + +G  D TI +WD+  G  V+ 
Sbjct: 263 TCRLYDLRADREVAIY-SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 321
Query: 585 LMGHTSCVWTL 595
           L GH + V TL
Sbjct: 322 LFGHENRVSTL 332

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 28/250 (11%)
Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKL--NANLVCYKG----HNYPVWDVQFNPQGHY 477
           V + +++P G  I     D    ++      N N+   K     H   +    F      
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVS 535
             ++S D T  +W ++  Q L+   GH +DV C+    +   N   +G  DK   +WD+ 
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 536 SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV------TPLMGHT 589
           SG+CV+ F  H S + S+   P G   ASG +D T  ++DL + R V      + + G +
Sbjct: 229 SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGAS 288
Query: 590 SCVWTLAYRFLLLVTNAY-LKISDKVSTGFLFYSLTIIYFGC--------ASCEGSLLAS 640
           S  ++L+ R L    N Y + + D      L  S   I FG          S +G+   S
Sbjct: 289 SVDFSLSGRLLFAGYNDYTINVWD-----VLKGSRVSILFGHENRVSTLRVSPDGTAFCS 343
Query: 641 GSADCTVKLW 650
           GS D T+++W
Sbjct: 344 GSWDHTLRVW 353

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 113/264 (42%), Gaps = 17/264 (6%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           I P GR   R+    +GH   +Y+  +      +LS+S D  + +W +     +      
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V    + P G+Y A    D    I+++      ++  R +AGH   + C R+ ++ N
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I T S D T  LWD+ +G+    F GH   ++SL+++PD R   SG  D +  +WD+  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTS-----CVWTLAYRFLLLVTNAYLKISD-KVSTGFLFYSLTIIYFGCAS 632
           G C     GH S     C +     F     +A  ++ D +     + YS   I  G  S
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 633 C----EGSLLASGSADCTVKLWDV 652
                 G LL +G  D    +WD 
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDA 299

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 113/264 (42%), Gaps = 17/264 (6%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           I P GR   R+    +GH   +Y+  +      +LS+S D  + +W +     +      
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V    + P G+Y A    D    I+++      ++  R +AGH   + C R+ ++ N
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I T S D T  LWD+ +G+    F GH   ++SL+++PD R   SG  D +  +WD+  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTS-----CVWTLAYRFLLLVTNAYLKISD-KVSTGFLFYSLTIIYFGCAS 632
           G C     GH S     C +     F     +A  ++ D +     + YS   I  G  S
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 633 C----EGSLLASGSADCTVKLWDV 652
                 G LL +G  D    +WD 
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDA 299

>pdb|2NXP|A Chain A, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of Tfiid Length = 156

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 42  IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCF 101
           + + + P++S     +++  D P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +
Sbjct: 3   VAVEDQPDVSAVLSAYNQQGD-PTXYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHXY 61
Query: 102 MDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIK 161
           ++LV   H  EA++FF  F  D E  +  DL+ L  +    H +  E     R SK  ++
Sbjct: 62  LELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHXKGNETXLDFRTSKFVLR 121
Query: 162 ICQYSYELLLQYLHKTQSTKMLGIINERI 190
           I + SY+LL ++L + Q+ ++  I+ E +
Sbjct: 122 ISRDSYQLLKRHLQEKQNNQIWNIVQEHL 150

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 113/264 (42%), Gaps = 17/264 (6%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           I P GR   R+    +GH   +Y+  +      ++S+S D  + +W +     +      
Sbjct: 48  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 107
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V    + P G+Y A    D    I+++      ++  R +AGH   + C R+ ++ N
Sbjct: 108 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 166
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I T S D T  LWD+ +G+    F GH   ++SL+++PD R   SG  D +  +WD+  
Sbjct: 167 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 579 GRCVTPLMGHTS-----CVWTLAYRFLLLVTNAYLKISD-KVSTGFLFYSLTIIYFGCAS 632
           G C     GH S     C +     F     +A  ++ D +     + YS   I  G  S
Sbjct: 227 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 286
Query: 633 C----EGSLLASGSADCTVKLWDV 652
                 G LL +G  D    +WD 
Sbjct: 287 VSFSKSGRLLLAGYDDFNCNVWDA 310

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 113/264 (42%), Gaps = 17/264 (6%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           I P GR   R+    +GH   +Y+  +      ++S+S D  + +W +     +      
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V    + P G+Y A    D    I+++      ++  R +AGH   + C R+ ++ N
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I T S D T  LWD+ +G+    F GH   ++SL+++PD R   SG  D +  +WD+  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTS-----CVWTLAYRFLLLVTNAYLKISD-KVSTGFLFYSLTIIYFGCAS 632
           G C     GH S     C +     F     +A  ++ D +     + YS   I  G  S
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 633 C----EGSLLASGSADCTVKLWDV 652
                 G LL +G  D    +WD 
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDA 299

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 113/264 (42%), Gaps = 17/264 (6%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           I P GR   R+    +GH   +Y+  +      ++S+S D  + +W +     +      
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V    + P G+Y A    D    I+++      ++  R +AGH   + C R+ ++ N
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I T S D T  LWD+ +G+    F GH   ++SL+++PD R   SG  D +  +WD+  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTS-----CVWTLAYRFLLLVTNAYLKISD-KVSTGFLFYSLTIIYFGCAS 632
           G C     GH S     C +     F     +A  ++ D +     + YS   I  G  S
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 633 C----EGSLLASGSADCTVKLWDV 652
                 G LL +G  D    +WD 
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDA 299

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 27/192 (14%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           QGHSG VYS  ++P  ++I+S+S D  + +W+   +      K H   V +  F P G  
Sbjct: 63  QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQS 122
Query: 478 FASSSHDRTARIWSM------DRIQPL-RIMAGHLSDVDCVRWHINCNYIA-------TG 523
            A    D    I+++      D   P+ R++ GH        +  +C Y+        TG
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKG------YASSCQYVPDQETRLITG 176
Query: 524 SSDKTVRLWDVSSGECVRIF-----IGHRSMILSLAM-SPDGRYMASGDEDGTIMMWDL- 576
           S D+T  LWDV++G+ + IF      GH + +LSL++ S +     SG  D T+ +WDL 
Sbjct: 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236
Query: 577 ASGRCVTPLMGH 588
            + R V    GH
Sbjct: 237 ITSRAVRTYHGH 248

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 89/204 (43%), Gaps = 22/204 (10%)
Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           S +  RTA  ++   +   R + GH   V  + W    N+I + S D  + +W+  + + 
Sbjct: 41  SKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK 100
Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----------GRCVTPLMGHT 589
                 H   ++  A +P+G+ +A G  D    +++L+S           R +T   G+ 
Sbjct: 101 THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYA 160
Query: 590 SCVWTLAYRFLLLVTNA--YLKISDKVSTG---FLF-------YSLTIIYFGCASCEGSL 637
           S    +  +   L+T +     +   V+TG    +F       ++  ++     S   ++
Sbjct: 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220
Query: 638 LASGSADCTVKLWDVTTSTKVLKT 661
             SGS D TV+LWD+  +++ ++T
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRT 244

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 80/180 (44%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           +GH   V S   S       SSS D  IRLW  +    +          W + F+P   Y
Sbjct: 77  EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 136
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
            A+ +H     I+ ++  +    +      +  + +  +  Y+A+G+ D  + ++D+++G
Sbjct: 137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 196
Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
           + +    GH   I SL  SPD + + +  +DG I ++D+        L GH S V  +A+
Sbjct: 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 125/262 (47%), Gaps = 28/262 (10%)
Query: 418 QGHSGPVYSASFSPL----GDFILSSSADTTIRLWSTK-----LNANLVCYKGHNYPVWD 468
           Q H   ++S ++        + +++ S D  +++W  +     L  +L   +GH   V  
Sbjct: 29  QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL---EGHQLGVVS 85
Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
           V  +      ASSS D   R+W ++  + ++ +     D   + +  +  Y+ATG+    
Sbjct: 86  VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGK 145
Query: 529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
           V ++ V SG+           ILS+A SPDG+Y+ASG  DG I ++D+A+G+ +  L GH
Sbjct: 146 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 205
Query: 589 TSCVWTLAYR--FLLLVT---NAYLKISD-------KVSTGFLFYSLTIIYFGCASCEGS 636
              + +L +     LLVT   + Y+KI D          +G   + L + +  C   + +
Sbjct: 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF--CP--DDT 261
Query: 637 LLASGSADCTVKLWDVTTSTKV 658
              S S+D +VK+WDV T T V
Sbjct: 262 HFVSSSSDKSVKVWDVGTRTCV 283

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 22/200 (11%)
Query: 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVW 467
           +S  LY+     ++S  FS     + + S D  I+L S K +     +++    H   + 
Sbjct: 8   KSLKLYKE---KIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR 62
Query: 468 DVQFNPQGHYFASSSHDRTARIW----SMDR---IQPLRIMAGHLSDVDCVRWHINCNYI 520
            V + P     A+ S D T  IW    S DR   +  L I+ GH ++V  V W  +  Y+
Sbjct: 63  SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL 122
Query: 521 ATGSSDKTVRLWDVS-SG---ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
           AT S DK+V +W+   SG   EC+ +   H   +  +   P    +AS   D T+ +W  
Sbjct: 123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182
Query: 577 ASG--RCVTPLMGHTSCVWT 594
                 CV  L GH   VW+
Sbjct: 183 YDDDWECVAVLNGHEGTVWS 202

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
           GH+  V   + S    F +SSS D T+RLW  +       + GH   V+ V F+P     
Sbjct: 74  GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAG----HLSDVDCVRW----------HINCNYIATGS 524
            S+  +R  ++W++  +   +  +     H   V CVR+               Y A+  
Sbjct: 134 LSAGAEREIKLWNI--LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
            D  +++W+ ++ +    F  H S +  L++SP+G+Y+A+G +D  +++WD+
Sbjct: 192 WDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 32/202 (15%)
Query: 480 SSSHDRTARIWSMDRIQ-------PLRIMAGHLSDV-DCVRWHINCNYIATGSSDKTVRL 531
           S S D+T  IW +   +       P + + GH   V D      NC  I++ S DKT+RL
Sbjct: 44  SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-SWDKTLRL 102
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC---------- 581
           WD+ +G   + F+GH+S + S+A SPD R + S   +  I +W++  G C          
Sbjct: 103 WDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSSAEKENH 161
Query: 582 --------VTPLMGHTSCVWTLAYRFLLLVTNAYLKISD---KVSTGFLFYSLTIIYFGC 630
                    +P+M   + V   A  F  +  +  LK+ +   ++   F  +   + +   
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSI 221
Query: 631 ASCEGSLLASGSADCTVKLWDV 652
            S  G  +A+G  D  + +WD+
Sbjct: 222 -SPNGKYIATGGKDKKLLIWDI 242

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 13/179 (7%)
Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           +   +G    YTL  GH G V S SF      ++S S D T ++W  K  + +   + HN
Sbjct: 88  LFATSGEDPLYTLI-GHQGNVCSLSFQD--GVVISGSWDKTAKVW--KEGSLVYNLQAHN 142
Query: 464 YPVWD---VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
             VWD   V F+   + F ++S D+T ++W  D++  ++  +G  +DV      ++  + 
Sbjct: 143 ASVWDAKVVSFSE--NKFLTASADKTIKLWQNDKV--IKTFSGIHNDVVRHLAVVDDGHF 198
Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
            + S+D  ++L D  +G+ +R + GH S +  + + P+G  ++ G ED T+ +W   +G
Sbjct: 199 ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENG 256

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 31/194 (15%)
Query: 420 HSGPVYSASFSPL-GDFILSSSADTTIRLWSTK-------LNANLVCYKG------HNYP 465
           H G + +    P+ G ++LS  +D  I L+  +            VC  G      H Y 
Sbjct: 42  HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 466 VWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM-------AGHLSDVDCVRWHINC 517
           V  VQ+ P     F SSS D+T ++W  + +Q   +        + H+S V       +C
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTK----HC 157
Query: 518 NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY-MASGDEDGTIMMWDL 576
             +A G+    V+L D+ SG C  I  GHR  IL+++ SP   Y +A+   D  + +WD+
Sbjct: 158 -LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Query: 577 --ASGRCVTPLMGH 588
             ASG C+  L  H
Sbjct: 217 RRASG-CLITLDQH 229

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTK--------LNANLV 457
           P+G  +     +GH    Y  S++P L  ++LS+S D TI LW           ++A  +
Sbjct: 167 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 226
Query: 458 CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRW 513
            + GH   V DV ++      F S + D+   IW     +  +P   +  H ++V+C+ +
Sbjct: 227 -FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285
Query: 514 HINCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGT 570
           +    +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  
Sbjct: 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345
Query: 571 IMMWDLA 577
           + +WDL+
Sbjct: 346 LHVWDLS 352

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 45/169 (26%)
Query: 496 QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHR 547
           QP   + GH  +   + W+ N N Y+ + S D T+ LWD+++        +   IF GH 
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231
Query: 548 SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYRFLLLV 603
           +++  +A          S  +D  +M+WD  +     P   +  HT+ V  L++      
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF------ 285
Query: 604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652
            N Y +                           +LA+GSAD TV LWD+
Sbjct: 286 -NPYSEF--------------------------ILATGSADKTVALWDL 307

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTK--------LNANLV 457
           P+G  +     +GH    Y  S++P L  ++LS+S D TI LW           ++A  +
Sbjct: 169 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 228
Query: 458 CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRW 513
            + GH   V DV ++      F S + D+   IW     +  +P   +  H ++V+C+ +
Sbjct: 229 -FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 287
Query: 514 HINCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGT 570
           +    +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  
Sbjct: 288 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 347
Query: 571 IMMWDLA 577
           + +WDL+
Sbjct: 348 LHVWDLS 354

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 45/169 (26%)
Query: 496 QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHR 547
           QP   + GH  +   + W+ N N Y+ + S D T+ LWD+++        +   IF GH 
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 233
Query: 548 SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYRFLLLV 603
           +++  +A          S  +D  +M+WD  +     P   +  HT+ V  L++      
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF------ 287
Query: 604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652
            N Y +                           +LA+GSAD TV LWD+
Sbjct: 288 -NPYSEF--------------------------ILATGSADKTVALWDL 309

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTK--------LNANLV 457
           P+G  +     +GH    Y  S++P L  ++LS+S D TI LW           ++A  +
Sbjct: 171 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 230
Query: 458 CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRW 513
            + GH   V DV ++      F S + D+   IW     +  +P   +  H ++V+C+ +
Sbjct: 231 -FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 289
Query: 514 HINCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGT 570
           +    +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  
Sbjct: 290 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 349
Query: 571 IMMWDLA 577
           + +WDL+
Sbjct: 350 LHVWDLS 356

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 45/169 (26%)
Query: 496 QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHR 547
           QP   + GH  +   + W+ N N Y+ + S D T+ LWD+++        +   IF GH 
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 548 SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYRFLLLV 603
           +++  +A          S  +D  +M+WD  +     P   +  HT+ V  L++      
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF------ 289
Query: 604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652
            N Y +                           +LA+GSAD TV LWD+
Sbjct: 290 -NPYSEF--------------------------ILATGSADKTVALWDL 311

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWST-------KLNANLVC 458
           P+G        +GH    Y  S++P L   +LS+S D TI LW         K+      
Sbjct: 163 PSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTI 222
Query: 459 YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW---SMDRIQPLRIMAGHLSDVDCVRWH 514
           + GH   V DV ++      F S + D+   IW   S +  +P   +  H ++V+C+ ++
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 515 INCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGTI 571
               +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  +
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
Query: 572 MMWDLA 577
            +WDL+
Sbjct: 343 NVWDLS 348

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 117/252 (46%), Gaps = 35/252 (13%)
Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH 483
           + S ++   G+++   ++   ++LW  +    L     H+  V  + +N     +  SS 
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS----YILSSG 205
Query: 484 DRTARIWSMD-RIQPLRI--MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC- 539
            R+  I   D R+    +  ++GH  +V  +RW  +  ++A+G +D  V +W  + GE  
Sbjct: 206 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 265
Query: 540 ---VRIFIGHRSMILSLAMSP-DGRYMASGD--EDGTIMMWDLASGRCVTPLMGHT---S 590
              ++ F  H+  + ++A  P     +A+G    D  I +W++ SG C++ +  H+   S
Sbjct: 266 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 325
Query: 591 CVWTLAYRFLL---------LVTNAY---LKISDKVSTGFLFYSLTIIYFGCASCEGSLL 638
            +W+  Y+ L+         LV   Y    K+++         SLT+      S +G+ +
Sbjct: 326 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM------SPDGATV 379
Query: 639 ASGSADCTVKLW 650
           AS +AD T++LW
Sbjct: 380 ASAAADETLRLW 391

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 117/252 (46%), Gaps = 35/252 (13%)
Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH 483
           + S ++   G+++   ++   ++LW  +    L     H+  V  + +N     +  SS 
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS----YILSSG 216
Query: 484 DRTARIWSMD-RIQPLRI--MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC- 539
            R+  I   D R+    +  ++GH  +V  +RW  +  ++A+G +D  V +W  + GE  
Sbjct: 217 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 276
Query: 540 ---VRIFIGHRSMILSLAMSP-DGRYMASGD--EDGTIMMWDLASGRCVTPLMGHT---S 590
              ++ F  H+  + ++A  P     +A+G    D  I +W++ SG C++ +  H+   S
Sbjct: 277 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 336
Query: 591 CVWTLAYRFLL---------LVTNAY---LKISDKVSTGFLFYSLTIIYFGCASCEGSLL 638
            +W+  Y+ L+         LV   Y    K+++         SLT+      S +G+ +
Sbjct: 337 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM------SPDGATV 390
Query: 639 ASGSADCTVKLW 650
           AS +AD T++LW
Sbjct: 391 ASAAADETLRLW 402

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASF-SPLGDFILSSSADTTIRLWST-------KLNANLVC 458
           P+G        +GH    Y  S+ S L   +LS+S D T+ LW         K+      
Sbjct: 165 PSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAI 224
Query: 459 YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW---SMDRIQPLRIMAGHLSDVDCVRWH 514
           + GH+  V DV ++      F S + D+   IW   S    +P  ++  H ++V+C+ ++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 515 INCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGTI 571
               +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 572 MMWDLA 577
            +WDL+
Sbjct: 345 NVWDLS 350

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASF-SPLGDFILSSSADTTIRLWST-------KLNANLVC 458
           P+G        +GH    Y  S+ S L   +LS+S D T+ LW         K+      
Sbjct: 165 PSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAI 224
Query: 459 YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW---SMDRIQPLRIMAGHLSDVDCVRWH 514
           + GH+  V DV ++      F S + D+   IW   S    +P  ++  H ++V+C+ ++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 515 INCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGTI 571
               +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 572 MMWDLA 577
            +WDL+
Sbjct: 345 NVWDLS 350

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 20/179 (11%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
           GH+G ++S        + ++ SAD +I+LW    N   V       PV  V+F+P G+YF
Sbjct: 72  GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS-NGQCVATWKSPVPVKRVEFSPCGNYF 130
Query: 479 AS-----SSHDRTARIWSMDRI-----------QPLRIMAGH--LSDVDCVRWHINCNYI 520
            +       +  +  I+ ++R            +P+  +  H  L       W     YI
Sbjct: 131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI 190
Query: 521 ATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
             G  D  +  +DVS+  E V     H   I  +  SPD  Y  +   D    + D+++
Sbjct: 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 43/82 (52%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           + GH   +  V+++   + + + S D +  +W   +GE +    GH   I S+ +    +
Sbjct: 28  LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 561 YMASGDEDGTIMMWDLASGRCV 582
           Y  +G  D +I +WD+++G+CV
Sbjct: 88  YCVTGSADYSIKLWDVSNGQCV 109

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 117/252 (46%), Gaps = 35/252 (13%)
Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH 483
           + S ++   G+++   ++   ++LW  +    L     H+  V  + +N     +  SS 
Sbjct: 70  ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS----YILSSG 125
Query: 484 DRTARIWSMD-RIQPLRI--MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC- 539
            R+  I   D R+    +  ++GH  +V  +RW  +  ++A+G +D  V +W  + GE  
Sbjct: 126 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185
Query: 540 ---VRIFIGHRSMILSLAMSP-DGRYMASGD--EDGTIMMWDLASGRCVTPLMGHT---S 590
              ++ F  H+  + ++A  P     +A+G    D  I +W++ SG C++ +  H+   S
Sbjct: 186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 245
Query: 591 CVWTLAYRFLL---------LVTNAY---LKISDKVSTGFLFYSLTIIYFGCASCEGSLL 638
            +W+  Y+ L+         LV   Y    K+++         SLT+      S +G+ +
Sbjct: 246 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM------SPDGATV 299
Query: 639 ASGSADCTVKLW 650
           AS +AD T++LW
Sbjct: 300 ASAAADETLRLW 311

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558
            I   H+S++  +++  +   + + S D  +++W V  G   R  IGHR+ +  +A+   
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 189
Query: 559 GRYMASGDEDGTIMMWDLASGRCV 582
           GR + S   DGTI +W+  +G  +
Sbjct: 190 GRNVLSASLDGTIRLWECGTGTTI 213

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558
            I   H+S++  +++  +   + + S D  +++W V  G   R  IGHR+ +  +A+   
Sbjct: 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192
Query: 559 GRYMASGDEDGTIMMWDLASGRCV 582
           GR + S   DGTI +W+  +G  +
Sbjct: 193 GRNVLSASLDGTIRLWECGTGTTI 216

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 53/213 (24%)
Query: 419 GHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           G +  + S  F P   F I+S S D T+ ++          +  H   V  V++NP G  
Sbjct: 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL 204
Query: 478 FASSSHDRTARIWS-MDRIQ-------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
           FAS+  D T  +++ +D  +        L+ +A H   V  + W  +   IA+ S+DKT+
Sbjct: 205 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA-HSGSVFGLTWSPDGTKIASASADKTI 263
Query: 530 RLWDVSS-------------------------------------------GECVRIFIGH 546
           ++W+V++                                           G   ++  GH
Sbjct: 264 KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH 323
Query: 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
              I +L+ S DG+ + S D +G I  WD+++G
Sbjct: 324 NKAITALSSSADGKTLFSADAEGHINSWDISTG 356

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 103/270 (38%), Gaps = 53/270 (19%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-----LNANLVCYKG 461
           P G      +Y  HS     A  SP G +  S      +R+W T      L   +  + G
Sbjct: 45  PVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG 104
Query: 462 HNYPVWDVQFNPQGHYFAS--SSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
              PV D+ ++ +    A+     +R   ++  D       + G    ++ V +  +  +
Sbjct: 105 ---PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 161
Query: 520 -IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I +GS D TV +++    +    F  H   + S+  +PDG   AS   DGTI++++   
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Query: 579 GRCVTPL-------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA 631
           G             + H+  V+ L +                                  
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTW---------------------------------- 247
Query: 632 SCEGSLLASGSADCTVKLWDVTTSTKVLKT 661
           S +G+ +AS SAD T+K+W+V T  KV KT
Sbjct: 248 SPDGTKIASASADKTIKIWNVAT-LKVEKT 276

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
           V+++  G + +    +    I+ ++    LR MAGH + V C+ W  N + +++GS    
Sbjct: 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGA 197
Query: 529 VRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587
           +   DV  +   +    GH S +  LA   DG  +ASG  D  + +WD  S         
Sbjct: 198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN 257
Query: 588 HTSCVWTLAY 597
           H + V  +A+
Sbjct: 258 HNAAVKAVAW 267

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567
           V C+ W  + N I TG  +  +RLW+  +G  + +   HR+ I+S+  + DG ++ S D 
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV 169
Query: 568 DGTIMMWDLASGRCV 582
           +   ++W++ SG  +
Sbjct: 170 ENVTILWNVISGTVM 184

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 475 GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWD 533
           G  F      +T R+   D+  PL  + GH + V  + W   N N IA+GS D TV +W+
Sbjct: 56  GGAFLVLPLGKTGRV---DKNVPL--VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWE 110
Query: 534 VSSG-------ECVRIFIGHRSMILSLAMSPDGR-YMASGDEDGTIMMWDLASGRCVTPL 585
           +  G       E V    GH   +  +A  P  +  + S   D  I++WD+ +G  V  L
Sbjct: 111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 97/257 (37%), Gaps = 31/257 (12%)
Query: 348 INT--HNGLNCA-SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404
           INT  H  + CA +IS     V  G     +KVWD++  G ++  S L    D   R++ 
Sbjct: 45  INTLNHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQL----DCLNRDNY 99
Query: 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY 464
           I      RS  L       +     S L  + L   A  T R+ +   ++   CY     
Sbjct: 100 I------RSCKLLPDGCTLIVGGEASTLSIWDL---AAPTPRIKAELTSSAPACYA---- 146
Query: 465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
               +  +P      S   D    +W +     +R   GH     C+    +   + TG 
Sbjct: 147 ----LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202
Query: 525 SDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
            D TVR WD+  G   R    H   S I SL   P G ++A G E   + +  +      
Sbjct: 203 LDNTVRSWDLREG---RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-K 258
Query: 583 TPLMGHTSCVWTLAYRF 599
             L  H SCV +L + +
Sbjct: 259 YQLHLHESCVLSLKFAY 275

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	704
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2j49_A	148	Transcription initiation factor TFIID subunit 5; n	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2j4b_A	138	TAF5, transcription initiation factor TFIID subuni	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.79
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.79
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.78
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.73
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.7
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.69
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.69
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.69
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.69
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.68
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.68
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.66
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.65
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.64
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.62
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.61
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.61
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.59
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.58
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.56
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.56
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.55
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.54
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.52
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.52
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.52
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.51
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.49
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.48
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.48
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.45
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.43
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.43
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.42
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.4
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.39
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.39
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.37
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.37
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.36
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.34
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.34
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.34
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.33
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.25
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.23
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.21
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.2
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.16
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.12
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.07
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.04
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.0
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.99
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.98
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.98
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.97
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.92
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.9
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.87
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.85
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.84
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.84
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.83
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.83
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.83
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.81
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.79
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.78
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.74
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.73
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.71
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.65
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.64
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.61
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.6
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.59
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.59
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.53
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.51
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.49
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.46
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.45
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.44
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.43
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.43
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.43
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.42
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.36
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.36
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.35
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.34
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.33
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.33
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.31
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.3
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.29
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.28
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.24
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.22
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.2
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.19
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.18
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.15
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.14
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.1
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.08
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.08
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.04
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.01
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.94
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.92
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.82
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.81
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.78
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.76
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.75
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.75
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.72
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.72
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.7
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.58
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.56
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.56
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.53
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.5
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.49
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.48
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.48
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.46
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.46
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.39
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.38
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.36
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.35
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.27
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.26
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.25
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.2
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.16
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.09
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.03
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.9
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.86
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.84
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.82
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.81
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.81
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.8
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.71
3ott_A	758	Two-component system sensor histidine kinase; beta	96.7
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.69
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.51
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.46
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.42
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.37
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.31
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.25
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.14
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.06
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.94
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.88
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.81
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.8
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.55
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.35
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.2
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.15
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.03
3ott_A	758	Two-component system sensor histidine kinase; beta	95.01
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.96
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.46
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.39
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.25
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.08
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.07
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.82
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	90.64
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	88.56
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.63
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	82.08

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3e-44  Score=391.94  Aligned_cols=281  Identities=28%  Similarity=0.498  Sum_probs=265.2

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      ++.+|.+.|+|++|+|++.+|++|+.||.|+|||+.+                            ......+.+|.+.|.
T Consensus       103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~----------------------------~~~~~~l~~h~~~V~  154 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET----------------------------GDFERTLKGHTDSVQ  154 (410)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT----------------------------CCCCEEECCCSSCEE
T ss_pred             eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------CcEEEEEeccCCcEE
Confidence            4679999999999999999999999999999999875                            234466789999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~  505 (704)
                      +++|+|++++|++|+.||+|++||+.+++++..+.+|...|++++|+|++.++++|+.|++|++||++++.++..+.+|.
T Consensus       155 ~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~  234 (410)
T 1vyh_C          155 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR  234 (410)
T ss_dssp             EEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC--------------------CCEEEEE
Q 005277          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD--------------------GRYMASG  565 (704)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd--------------------g~~l~sg  565 (704)
                      ..|.++.|+|++.+|++|+.|++|++||++++.+...+.+|...|.+++|+|+                    |.+|++|
T Consensus       235 ~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg  314 (410)
T 1vyh_C          235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  314 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999996                    6799999


Q ss_pred             eCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277          566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC  645 (704)
Q Consensus       566 ~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg  645 (704)
                      +.||.|++||++++.++..+.+|...|.++.|                                  +|++.+|++|+.||
T Consensus       315 s~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~----------------------------------~~~g~~l~s~s~D~  360 (410)
T 1vyh_C          315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF----------------------------------HSGGKFILSCADDK  360 (410)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEE----------------------------------CSSSSCEEEEETTT
T ss_pred             eCCCeEEEEECCCCceEEEEECCCCcEEEEEE----------------------------------cCCCCEEEEEeCCC
Confidence            99999999999999999999999999999999                                  99999999999999


Q ss_pred             cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          646 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       646 ~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      +|++||+.++.               .+..+..|...|.+++|+|++.+||+|+.||+
T Consensus       361 ~i~vwd~~~~~---------------~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~  403 (410)
T 1vyh_C          361 TLRVWDYKNKR---------------CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT  403 (410)
T ss_dssp             EEEEECCTTSC---------------CCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             eEEEEECCCCc---------------eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence            99999997754               35567788999999999999999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.4e-43  Score=371.81  Aligned_cols=284  Identities=22%  Similarity=0.361  Sum_probs=262.1

Q ss_pred             EEEeeCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC
Q 005277          345 YTFINTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~d----g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  420 (704)
                      ....+|.+.|++++|+|+    +.+|++|+.|++|+||++....                          ......+.+|
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~--------------------------~~~~~~l~gh   79 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER--------------------------LDLQWSLEGH   79 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE--------------------------EEEEEEECCC
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC--------------------------eeeeeeeccC
Confidence            345689999999999985    6799999999999999986411                          1233457899


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~  500 (704)
                      ...|.+++|++++.++++++.|++|++||+.+++.+..+..|...+++++|+|++++|++|+.||.+++|++++++....
T Consensus        80 ~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~  159 (321)
T 3ow8_A           80 QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS  159 (321)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      +..|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|..+|.+++|+|+|++|++|+.||.|++||+++++
T Consensus       160 ~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN  239 (321)
T ss_dssp             EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred             ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277          581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK  660 (704)
Q Consensus       581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~  660 (704)
                      .+..+.+|...|.+++|                                  +|++.+|++|+.||+|+|||+.++.    
T Consensus       240 ~~~~~~~h~~~v~~~~~----------------------------------sp~~~~l~s~s~D~~v~iwd~~~~~----  281 (321)
T 3ow8_A          240 LAGTLSGHASWVLNVAF----------------------------------CPDDTHFVSSSSDKSVKVWDVGTRT----  281 (321)
T ss_dssp             EEEEECCCSSCEEEEEE----------------------------------CTTSSEEEEEETTSCEEEEETTTTE----
T ss_pred             eeEEEcCCCCceEEEEE----------------------------------CCCCCEEEEEeCCCcEEEEeCCCCE----
Confidence            99999999999999999                                  9999999999999999999998764    


Q ss_pred             cccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          661 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       661 ~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                 ++..+..|..+|.+++|+|++.+|++|+.||+
T Consensus       282 -----------~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~  313 (321)
T 3ow8_A          282 -----------CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE  313 (321)
T ss_dssp             -----------EEEEECCCSSCEEEEEECTTSSEEEEEETTCC
T ss_pred             -----------EEEEEcCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence                       35567788999999999999999999999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.1e-43  Score=364.22  Aligned_cols=283  Identities=23%  Similarity=0.361  Sum_probs=256.2

Q ss_pred             EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      ..++.+|.+.|++++|+|++++||+|+.||.|+|||+.+                            ......+.+|..+
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~----------------------------~~~~~~~~~~~~~   57 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET----------------------------QVEVRSIQVTETP   57 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----------------------------TEEEEEEECCSSC
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC----------------------------CceeEEeeccCCc
Confidence            346889999999999999999999999999999999875                            2345667789999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEec
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMA  502 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~  502 (704)
                      |.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|++++|+|++.++++|+.||+|++||++++ .....+.
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~  137 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE  137 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999877 4557788


Q ss_pred             cCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEec--CCCEEEEEeCCCeEEEEeCCC
Q 005277          503 GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSP--DGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       503 ~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~sp--dg~~l~sg~~dg~I~iwdl~~  578 (704)
                      +|...|.+++|+| ++.+|++|+.|++|++||++++.....+. +|...+..+.|+|  ++.+|++|+.||.|++||+++
T Consensus       138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  217 (304)
T 2ynn_A          138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (304)
T ss_dssp             CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred             ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence            9999999999999 67999999999999999998877655554 5668899999987  778999999999999999999


Q ss_pred             CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277          579 GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~  658 (704)
                      ++++..+.+|...|.++.|                                  +|++.+|++|+.||+|++||+.+++. 
T Consensus       218 ~~~~~~~~~h~~~v~~~~~----------------------------------~p~~~~l~s~s~Dg~i~iWd~~~~~~-  262 (304)
T 2ynn_A          218 KSCVATLEGHMSNVSFAVF----------------------------------HPTLPIIISGSEDGTLKIWNSSTYKV-  262 (304)
T ss_dssp             TEEEEEEECCSSCEEEEEE----------------------------------CSSSSEEEEEETTSCEEEEETTTCCE-
T ss_pred             CccceeeCCCCCCEEEEEE----------------------------------CCCCCEEEEEcCCCeEEEEECCCCce-
Confidence            9999999999999999999                                  99999999999999999999987643 


Q ss_pred             cccccccCccccccccccCCCCcCeEEEEEccCCc--EEEEeecCCC
Q 005277          659 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL--LFAAGALSKT  703 (704)
Q Consensus       659 ~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~--~La~gs~dgt  703 (704)
                                    +..+..+...+.+++|+|++.  ++|+|+.+|.
T Consensus       263 --------------~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~  295 (304)
T 2ynn_A          263 --------------EKTLNVGLERSWCIATHPTGRKNYIASGFDNGF  295 (304)
T ss_dssp             --------------EEEECCSSSSEEEEEECTTCGGGCEEEEETTEE
T ss_pred             --------------eeeccCCCccEEEEEECCCCCceEEEEecCCce
Confidence                          456667788999999999875  6899988763

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.2e-42  Score=366.09  Aligned_cols=284  Identities=21%  Similarity=0.366  Sum_probs=257.9

Q ss_pred             eEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277          342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (704)
Q Consensus       342 ~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (704)
                      .+..++.+|.+.|++++|+||+++|++|+.||.|+|||+..                            ......+..|.
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~----------------------------~~~~~~~~~~~   97 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT----------------------------TNKVHAIPLRS   97 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT----------------------------CCEEEEEECSS
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC----------------------------CCcceEeecCC
Confidence            34567889999999999999999999999999999999865                            23445567899


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~  497 (704)
                      ..|.+++|+|++++|++|+.|+.|++|++.+..    ....+.+|...|.++.|++++. +++++.|++|++||+++++.
T Consensus        98 ~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~  176 (340)
T 1got_B           98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ  176 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE
Confidence            999999999999999999999999999998753    4566789999999999998775 89999999999999999999


Q ss_pred             eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~  577 (704)
                      +..+.+|...|.+++|+|+++++++|+.||+|++||++++.++..+.+|...|.+++|+|+|++|++|+.||.|++||++
T Consensus       177 ~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~  256 (340)
T 1got_B          177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR  256 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeeeecC--CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          578 SGRCVTPLMG--HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       578 ~~~~~~~~~~--h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                      +++.+..+..  +...|.++.|                                  +|+|.+|++|+.||.|++||+.++
T Consensus       257 ~~~~~~~~~~~~~~~~v~~~~~----------------------------------s~~g~~l~~g~~d~~i~vwd~~~~  302 (340)
T 1got_B          257 ADQELMTYSHDNIICGITSVSF----------------------------------SKSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             TTEEEEEECCTTCCSCEEEEEE----------------------------------CTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CCcEEEEEccCCcccceEEEEE----------------------------------CCCCCEEEEECCCCeEEEEEcccC
Confidence            9988776653  3357899999                                  999999999999999999999876


Q ss_pred             ccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          656 TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       656 ~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ..               +..+.+|..+|.+++|+|+|.+||+|+.||+
T Consensus       303 ~~---------------~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~  335 (340)
T 1got_B          303 DR---------------AGVLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             CE---------------EEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             cE---------------eeEeecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence            43               4567789999999999999999999999985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.2e-41  Score=361.87  Aligned_cols=284  Identities=24%  Similarity=0.373  Sum_probs=256.1

Q ss_pred             EEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (704)
Q Consensus       343 ~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (704)
                      ...++.+|.+.|+|++|+|++++||+|+.||+|+|||..+                            ......+..|..
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~----------------------------~~~~~~~~~~~~  107 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT----------------------------TNKEHAVTMPCT  107 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------------CCEEEEEECSSS
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC----------------------------CCcceEEecCCC
Confidence            4457889999999999999999999999999999999764                            123344567888


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLN------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~------~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~  496 (704)
                      .|.+++|+|++.+|++|+.|+.+++|++...      .....+.+|...|.+++|+|++..+++|+.|++|++||+++++
T Consensus       108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~  187 (354)
T 2pbi_B          108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ  187 (354)
T ss_dssp             CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred             CEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe
Confidence            9999999999999999999999999998654      3456677899999999999999999999999999999999999


Q ss_pred             eeEEeccCCCCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277          497 PLRIMAGHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (704)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw  574 (704)
                      .+..+.+|...|.+++|+|  ++++|++|+.||+|++||+++++++..+.+|...|.+++|+|+|.+|++|+.||.|++|
T Consensus       188 ~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lw  267 (354)
T 2pbi_B          188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY  267 (354)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            9999999999999999988  47899999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCeeeeeecCC--CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277          575 DLASGRCVTPLMGH--TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV  652 (704)
Q Consensus       575 dl~~~~~~~~~~~h--~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~  652 (704)
                      |+++++.+..+..+  ...+.++.|                                  +|++.+|++|+.||+|++||+
T Consensus       268 d~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------s~~g~~l~~g~~d~~i~vwd~  313 (354)
T 2pbi_B          268 DLRADREVAIYSKESIIFGASSVDF----------------------------------SLSGRLLFAGYNDYTINVWDV  313 (354)
T ss_dssp             ETTTTEEEEEECCTTCCSCEEEEEE----------------------------------CTTSSEEEEEETTSCEEEEET
T ss_pred             ECCCCcEEEEEcCCCcccceeEEEE----------------------------------eCCCCEEEEEECCCcEEEEEC
Confidence            99998887766544  346788888                                  999999999999999999999


Q ss_pred             CCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          653 TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      .++..               +..+.+|..+|.+++|+|+|.+||+|+.||+
T Consensus       314 ~~~~~---------------~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~  349 (354)
T 2pbi_B          314 LKGSR---------------VSILFGHENRVSTLRVSPDGTAFCSGSWDHT  349 (354)
T ss_dssp             TTCSE---------------EEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             CCCce---------------EEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence            87643               4566789999999999999999999999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.8e-40  Score=344.93  Aligned_cols=288  Identities=25%  Similarity=0.490  Sum_probs=257.8

Q ss_pred             eEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277          342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (704)
Q Consensus       342 ~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (704)
                      ...+++.+|.+.|++++|+|++++||+|+.||.|++|++..                            ......+.+|.
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~----------------------------~~~~~~~~~h~   65 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD----------------------------GKFEKTISGHK   65 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------CCEEEEECCCS
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC----------------------------cccchhhccCC
Confidence            34567889999999999999999999999999999999865                            23445677899


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      ..|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++.++++|+.||+|++||+++++.+..+
T Consensus        66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  145 (312)
T 4ery_A           66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL  145 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      ..|...|.+++|+|++++|++|+.||.|++||+++++.+..+. .+...+.+++|+|+|++|++++.||.|++||+++++
T Consensus       146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  225 (312)
T 4ery_A          146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK  225 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            9999999999999999999999999999999999998887764 566789999999999999999999999999999999


Q ss_pred             eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277          581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK  660 (704)
Q Consensus       581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~  660 (704)
                      .+..+.+|...+..+...+                               ..+++.+|++|+.||.|++||+.++..   
T Consensus       226 ~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~l~sg~~dg~i~vwd~~~~~~---  271 (312)
T 4ery_A          226 CLKTYTGHKNEKYCIFANF-------------------------------SVTGGKWIVSGSEDNLVYIWNLQTKEI---  271 (312)
T ss_dssp             EEEEECSSCCSSSCCCEEE-------------------------------ECSSSCEEEECCTTSCEEEEETTTCCE---
T ss_pred             EEEEEEecCCceEEEEEEE-------------------------------EeCCCcEEEEECCCCEEEEEECCCchh---
Confidence            9999998876554443210                               046788999999999999999987643   


Q ss_pred             cccccCccccccccccCCCCcCeEEEEEccCCcEEEEee--cCCC
Q 005277          661 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA--LSKT  703 (704)
Q Consensus       661 ~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs--~dgt  703 (704)
                                  +..+..|..+|.+++|+|++.+|++++  .|++
T Consensus       272 ------------~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~  304 (312)
T 4ery_A          272 ------------VQKLQGHTDVVISTACHPTENIIASAALENDKT  304 (312)
T ss_dssp             ------------EEEECCCSSCEEEEEECSSSSEEEEEECTTTCC
T ss_pred             ------------hhhhhccCCcEEEEeecCcCCceEEEEccCCcc
Confidence                        556778999999999999999999987  3553

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8e-41  Score=356.08  Aligned_cols=296  Identities=22%  Similarity=0.413  Sum_probs=248.4

Q ss_pred             EEEEEeeCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277          343 SFYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (704)
Q Consensus       343 ~~~~~~~~~~-~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (704)
                      +..++.+|.. .|.+++|+|+|++||+|+.||.|+||++.....                         ........+|.
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-------------------------~~~~~~~~~h~   61 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-------------------------ICKSVLSEGHQ   61 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-------------------------EEEEEECSSCS
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-------------------------eeeeeeccccC
Confidence            4556778887 899999999999999999999999999875210                         01122346899


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ---  496 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~---  496 (704)
                      +.|.+++|+|++++|++|+.|++|++|++..+  .++..+.+|..+|.+++|+|++++|++|+.|++|++||++...   
T Consensus        62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~  141 (345)
T 3fm0_A           62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE  141 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred             CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence            99999999999999999999999999999876  3577889999999999999999999999999999999998764   


Q ss_pred             eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc--EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (704)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw  574 (704)
                      .+..+.+|...|.+++|+|++++|++|+.|++|++||++++.  +...+.+|...|.+++|+|+|++|++|+.||.|++|
T Consensus       142 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW  221 (345)
T 3fm0_A          142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW  221 (345)
T ss_dssp             EEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEe
Confidence            456778899999999999999999999999999999998875  456788999999999999999999999999999999


Q ss_pred             eCCCC---------------eeeeeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEE
Q 005277          575 DLASG---------------RCVTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL  638 (704)
Q Consensus       575 dl~~~---------------~~~~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  638 (704)
                      |....               +++..+.+ |...|++++|                                  ++++..|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~----------------------------------~~~~~~l  267 (345)
T 3fm0_A          222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW----------------------------------CQLTGAL  267 (345)
T ss_dssp             EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEE----------------------------------CTTTCCE
T ss_pred             ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEE----------------------------------ecCCCEE
Confidence            96422               23444444 7888999999                                  9999999


Q ss_pred             EEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCC-cEEEEeecCCC
Q 005277          639 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGALSKT  703 (704)
Q Consensus       639 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g-~~La~gs~dgt  703 (704)
                      ++++.|+.|++|+..........      ...........|...|.+|+|+|++ .+||+|+.||+
T Consensus       268 ~s~~~d~~i~vw~~~~~~~~~~~------~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~  327 (345)
T 3fm0_A          268 ATACGDDAIRVFQEDPNSDPQQP------TFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE  327 (345)
T ss_dssp             EEEETTSCEEEEEECTTSCTTSC------CEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             EEEeCCCeEEEEEeCCCCCccee------eEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence            99999999999998765321100      0000122345789999999999998 59999999986

>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1

Probab=100.00  E-value=9.3e-44  Score=320.78  Aligned_cols=139  Identities=32%  Similarity=0.584  Sum_probs=130.3

Q ss_pred             cCChhhHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCC
Q 005277           61 EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLS  140 (704)
Q Consensus        61 ~~~~~~~~~~~~~l~~~~~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~  140 (704)
                      ++||+.|+++|.+|++||++|||+||+||++|||||||||||+||++| .++|++||++|+++|..+|.++|++|++|++
T Consensus         4 ~~dp~~y~~~y~~Lr~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~   82 (148)
T 2j49_A            4 MNAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNS   82 (148)
T ss_dssp             ---CTTHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCS
T ss_pred             ccCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCC
Confidence            578999999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             hhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhcCcc---hHHHhhcceeEEEEccCCCC
Q 005277          141 PSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST---KMLGIINERINFQVSPGQPS  200 (704)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~i~~~~~~~~~~~~~~~  200 (704)
                      |+|+++|++++.||+|||+|+||++++++|++||+++++.   +|++|||+||+|++++|.|+
T Consensus        83 p~hl~~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~~~~~gg~~ll~Iin~~i~i~v~~~~p~  145 (148)
T 2j49_A           83 IDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIVESVTA  145 (148)
T ss_dssp             HHHHHHCHHHHHHHSSCEEEEECHHHHHHHHHHHHHTGGGTHHHHHHHHHHHEEEEEC-----
T ss_pred             HHHHhhCHHHHHHHhCCeEEEECHHHHHHHHHHHHHcCcccHHHHHHHHHHheeEeeeCCCCC
Confidence            9999999999999999999999999999999999999988   99999999999999998775

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.4e-40  Score=347.24  Aligned_cols=292  Identities=26%  Similarity=0.385  Sum_probs=253.6

Q ss_pred             EEEeeCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          345 YTFINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg-~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      .++.+|.+.|++++|+|++ ++|++|+.|++|++|++......                       .......+.+|...
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~-----------------------~~~~~~~~~~h~~~   67 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-----------------------FGVPVRSFKGHSHI   67 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE-----------------------EEEEEEEEECCSSC
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc-----------------------ccccceEEeCCccc
Confidence            4678999999999999964 89999999999999998642110                       12345678899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~  503 (704)
                      |.+++|+|++++|++|+.|++|++||+.+++.+..+.+|..+|.+++|+|++.++++|+.|++|++||++. ..+..+.+
T Consensus        68 v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~  146 (319)
T 3frx_A           68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLG  146 (319)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECC
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999964 57788889


Q ss_pred             CCCCeeEEEEcCC------CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277          504 HLSDVDCVRWHIN------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       504 ~~~~V~~v~~~p~------~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~  577 (704)
                      |...|.+++|+|+      +..+++|+.|+.|++||+++++....+.+|...|.+++|+|+|++|++|+.||.|++||+.
T Consensus       147 h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~  226 (319)
T 3frx_A          147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA  226 (319)
T ss_dssp             CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            9999999999985      4589999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          578 SGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       578 ~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      +++.+..+..+ ..|.+++|                                  +|++.+|++++.+ .+++|++.....
T Consensus       227 ~~~~~~~~~~~-~~v~~~~~----------------------------------sp~~~~la~~~~~-~i~v~~~~~~~~  270 (319)
T 3frx_A          227 AKKAMYTLSAQ-DEVFSLAF----------------------------------SPNRYWLAAATAT-GIKVFSLDPQYL  270 (319)
T ss_dssp             TTEEEEEEECC-SCEEEEEE----------------------------------CSSSSEEEEEETT-EEEEEEETTEEE
T ss_pred             CCcEEEEecCC-CcEEEEEE----------------------------------cCCCCEEEEEcCC-CcEEEEeCcCee
Confidence            99999888755 57999999                                  9999999988865 599999987543


Q ss_pred             ccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          658 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       658 ~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      .......       .......+...|.+++|+|+|++|++|+.||+
T Consensus       271 ~~~~~~~-------~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~  309 (319)
T 3frx_A          271 VDDLRPE-------FAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV  309 (319)
T ss_dssp             EEEECCC-------CTTCCGGGCCCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeccCcc-------ccccccCcCcceeEEEECCCCCEEEEeecCce
Confidence            3221110       01122345677999999999999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.8e-41  Score=364.63  Aligned_cols=291  Identities=23%  Similarity=0.378  Sum_probs=254.9

Q ss_pred             CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC
Q 005277          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (704)
Q Consensus       340 p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (704)
                      ...+..++.+|.+.|+|++|+|++++||+|+.||+|+|||+.+                            ......+.+
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~----------------------------~~~~~~~~~  106 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT----------------------------SQKTHAIKL  106 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT----------------------------TEEEEEEEC
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------CccceEEec
Confidence            3456678899999999999999999999999999999999865                            234556778


Q ss_pred             CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-------eeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEE
Q 005277          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-------NLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWS  491 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-------~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd  491 (704)
                      |...|.+++|+|++++|++|+.|++|++|++.+..       ....+.+|...|.++.|+|+ +..|++|+.|++|++||
T Consensus       107 h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd  186 (380)
T 3iz6_a          107 HCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWD  186 (380)
T ss_dssp             CCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEEC
T ss_pred             CCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEE
Confidence            99999999999999999999999999999987532       34567899999999999996 56799999999999999


Q ss_pred             CCCCceeEEe-----ccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCC-CCcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277          492 MDRIQPLRIM-----AGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       492 ~~~~~~~~~~-----~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~h~~~i~~l~~spdg~~l~s  564 (704)
                      +.+++.+..+     .+|...|.+++|+| ++++|++|+.||+|++||++ .+.++..+.+|.+.|.+++|+|+|++|++
T Consensus       187 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s  266 (380)
T 3iz6_a          187 VTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT  266 (380)
T ss_dssp             TTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE
T ss_pred             cCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE
Confidence            9999988877     67899999999987 88999999999999999998 56788899999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCeeeeeecCCC-------ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277          565 GDEDGTIMMWDLASGRCVTPLMGHT-------SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL  637 (704)
Q Consensus       565 g~~dg~I~iwdl~~~~~~~~~~~h~-------~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  637 (704)
                      |+.||.|++||+++++.+..+..+.       ..|++++|                                  +|+|.+
T Consensus       267 ~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------s~~g~~  312 (380)
T 3iz6_a          267 GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF----------------------------------SISGRL  312 (380)
T ss_dssp             ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE----------------------------------CSSSSE
T ss_pred             EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEE----------------------------------CCCCCE
Confidence            9999999999999999888776543       24778888                                  999999


Q ss_pred             EEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          638 LASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       638 lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      |++|+.||.|++||+..+......           ......|...|.+++|+|+|.+|++|+.||+
T Consensus       313 l~~g~~dg~i~vwd~~~~~~~~~~-----------~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~  367 (380)
T 3iz6_a          313 LFAGYSNGDCYVWDTLLAEMVLNL-----------GTLQNSHEGRISCLGLSSDGSALCTGSWDKN  367 (380)
T ss_dssp             EEEECTTSCEEEEETTTCCEEEEE-----------CCSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred             EEEEECCCCEEEEECCCCceEEEE-----------ecccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence            999999999999999876543211           1122578899999999999999999999986

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=100.00  E-value=2.8e-43  Score=323.38  Aligned_cols=152  Identities=28%  Similarity=0.553  Sum_probs=144.9

Q ss_pred             CCCchhhhccccccccccCChhhHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 005277           44 ILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFRED  123 (704)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~  123 (704)
                      +.+|+++++.+.+++ +++||+.|+++|.+||+||++|||+||+||++|||||||||||+||++|+.++|+.||++|+++
T Consensus         5 ~~~e~~~~~~~~~~~-~~~dp~~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~   83 (156)
T 2nxp_A            5 VEDQPDVSAVLSAYN-QQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGD   83 (156)
T ss_dssp             ---CCCHHHHHGGGS-SCCCTTSHHHHHHHHHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG
T ss_pred             ccCCchHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHH
Confidence            348889999998775 5679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHhcCCChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhcCcchHHHhhcceeEEEEcc
Q 005277          124 HEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSP  196 (704)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~  196 (704)
                      |+.+|+++|++|++|++|+|+++|++++.||+|||+|+||++++++|++||+++++.+|++|||+||+|++++
T Consensus        84 ~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~~fL~~~~~~~ll~Iin~~i~i~v~~  156 (156)
T 2nxp_A           84 QECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFD  156 (156)
T ss_dssp             SCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHHHHTCEEEEEC
T ss_pred             hHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHHHHHHHcCChHHHHHHHHheeeeeeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999863

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3e-40  Score=351.41  Aligned_cols=286  Identities=23%  Similarity=0.272  Sum_probs=237.0

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      .|...|.+++|+|||++|++|+ |+++++||..........                 .............|..+|.+++
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~v~~~~   89 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC-----------------AAPNEGFCSAGVQTEAGVADLT   89 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGG-----------------GTTCGGGCSEEEEESSCEEEEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecccc-----------------ccCCcceeeeeeccCCCEEEEE
Confidence            3566799999999999999887 778888874320000000                 0000111222334667899999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEE----eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277          429 FSPLGDFILSSSADTTIRLWSTKLNANLVC----YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~----~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      |+|++ .|++|+.||+|+|||+.+++.+..    ..+|...|++++|+|+|++|++|+.|++|++||+++++++..+.+|
T Consensus        90 ~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  168 (344)
T 4gqb_B           90 WVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH  168 (344)
T ss_dssp             EETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc
Confidence            99985 688999999999999999876544    3489999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCe
Q 005277          505 LSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       505 ~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      ...|.+++|+|++ .+|++|+.|++|++||++++++...+.  .|...+.+++|+|+ +++|++|+.||.|++||+++++
T Consensus       169 ~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~  248 (344)
T 4gqb_B          169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS  248 (344)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred             CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence            9999999999987 578999999999999999999888764  45667999999994 6789999999999999999999


Q ss_pred             eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC-CEEEEEeCCCcEEEEeCCCCcccc
Q 005277          581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG-SLLASGSADCTVKLWDVTTSTKVL  659 (704)
Q Consensus       581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~lasgs~Dg~V~iWd~~~~~~~~  659 (704)
                      ++..+.+|...|+++.|                                  +|++ ++|++|+.||+|+|||+.+++   
T Consensus       249 ~~~~~~~h~~~v~~v~f----------------------------------sp~g~~~lasgs~D~~i~vwd~~~~~---  291 (344)
T 4gqb_B          249 CVLSSAVHSQCVTGLVF----------------------------------SPHSVPFLASLSEDCSLAVLDSSLSE---  291 (344)
T ss_dssp             CCEEEECCSSCEEEEEE----------------------------------CSSSSCCEEEEETTSCEEEECTTCCE---
T ss_pred             EEEEEcCCCCCEEEEEE----------------------------------ccCCCeEEEEEeCCCeEEEEECCCCc---
Confidence            99999999999999999                                  9987 589999999999999998754   


Q ss_pred             ccccccCccccccccccCCCCcCeEEEEEccCCc-EEEEeecCCC
Q 005277          660 KTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGALSKT  703 (704)
Q Consensus       660 ~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~-~La~gs~dgt  703 (704)
                                   +..+.+|...|++|+|+|++. +|++|+.||+
T Consensus       292 -------------~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~  323 (344)
T 4gqb_B          292 -------------LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQ  323 (344)
T ss_dssp             -------------EEEECCCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             -------------EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCe
Confidence                         234568999999999999985 7889999986

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.7e-39  Score=342.79  Aligned_cols=298  Identities=22%  Similarity=0.343  Sum_probs=245.1

Q ss_pred             EEEEEeeCCCCEEEEEE-----cC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceee
Q 005277          343 SFYTFINTHNGLNCASI-----SQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL  416 (704)
Q Consensus       343 ~~~~~~~~~~~V~~~~f-----s~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (704)
                      +..++.+|.+.|+|++|     ++ ++++||+|+.|++|+||++.......                     ........
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~---------------------~~~~~~~~   71 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG---------------------YFGIPHKA   71 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS---------------------BSEEEEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc---------------------ccccccch
Confidence            34567899999999999     77 89999999999999999987521100                     01234566


Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~  496 (704)
                      +.+|...|.+++|+|++.+|++|+.|++|++||+.+++.+..+.+|..+|++++|+|+++++++|+.|++|++||+... 
T Consensus        72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-  150 (343)
T 2xzm_R           72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-  150 (343)
T ss_dssp             ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-
T ss_pred             hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999999843 


Q ss_pred             eeEEec---cCCCCeeEEEEcCCC----------CEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEE
Q 005277          497 PLRIMA---GHLSDVDCVRWHINC----------NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA  563 (704)
Q Consensus       497 ~~~~~~---~~~~~V~~v~~~p~~----------~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~  563 (704)
                      ......   +|...|.+++|+|++          .+|++|+.||.|++|| .++.....+.+|...|.+++|+|+|++|+
T Consensus       151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  229 (343)
T 2xzm_R          151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIA  229 (343)
T ss_dssp             EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEE
Confidence            333333   688899999999987          7999999999999999 46677788899999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe
Q 005277          564 SGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS  642 (704)
Q Consensus       564 sg~~dg~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs  642 (704)
                      +|+.||.|++||+... .....+ .+...|.+++|                                  +|++.++++| 
T Consensus       230 sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~----------------------------------sp~~~~la~~-  273 (343)
T 2xzm_R          230 TGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAF----------------------------------NPKLQWVAVG-  273 (343)
T ss_dssp             EEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEE----------------------------------CSSSCEEEEE-
T ss_pred             EEcCCCeEEEEECCCCcccceee-cCCCcEEEEEE----------------------------------CCCCCEEEEE-
Confidence            9999999999999544 333333 35567999999                                  9999887755 


Q ss_pred             CCCcEEEEeCCCCcccc--ccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          643 ADCTVKLWDVTTSTKVL--KTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       643 ~Dg~V~iWd~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      .|+.|++|++.+.....  ....    ...........|...|.+++|+|+|.+|++|+.||+
T Consensus       274 ~d~~v~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~  332 (343)
T 2xzm_R          274 TDQGVKIFNLMTQSKAPVCTIEA----EPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV  332 (343)
T ss_dssp             ESSCEEEEESSSCCSCSEEECCC----CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSE
T ss_pred             CCCCEEEEEeCCCCCCceEEeec----CcchhhhhhcCCCCceEEEEECCCCCeEEEecCCce
Confidence            57889999998765432  1110    000112223467788999999999999999999985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.5e-39  Score=373.46  Aligned_cols=359  Identities=20%  Similarity=0.273  Sum_probs=271.5

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCcccc--ccccCCCC---CCCCccc
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAV--SSGLQGEN---DTTPRED  403 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~--~~~~~~~~---~~~~~~~  403 (704)
                      .+.+.+|....+.. ..++.+|...|++++|||||++||+|+.||.|+|||+........  ........   ...+...
T Consensus        38 ~~~v~l~~~~~~~~-~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~  116 (611)
T 1nr0_A           38 GTSVYTVPVGSLTD-TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK  116 (611)
T ss_dssp             TTEEEEEETTCSSC-CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred             CCEEEEecCCCccc-CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCC
Confidence            35778887654432 345679999999999999999999999999999999864322111  01000000   0000000


Q ss_pred             --------------ccCCCCCccceeeccCCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeE
Q 005277          404 --------------IIGPNGRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD  468 (704)
Q Consensus       404 --------------~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~  468 (704)
                                    +..-+ .......+.+|.+.|++++|+|++. .|++|+.|++|++||..+++....+.+|...|++
T Consensus       117 ~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~  195 (611)
T 1nr0_A          117 RIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS  195 (611)
T ss_dssp             EEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEE
T ss_pred             EEEEEECCCCceeEEEEee-CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEE
Confidence                          00000 1223345789999999999999987 5999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-------cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 005277          469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-------GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR  541 (704)
Q Consensus       469 v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~-------~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~  541 (704)
                      ++|+|+|++|++|+.|++|++||+.+++.+..+.       +|...|.+++|+|++++|++|+.|++|++||+.+++++.
T Consensus       196 v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~  275 (611)
T 1nr0_A          196 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK  275 (611)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee
Confidence            9999999999999999999999999998888874       799999999999999999999999999999999876544


Q ss_pred             E-------------------------------------------eecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          542 I-------------------------------------------FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       542 ~-------------------------------------------~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                      .                                           +.+|...|++++|+|+|++|++++.||.|++||+.+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          276 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST  355 (611)
T ss_dssp             EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence            3                                           347899999999999999999999999999999999


Q ss_pred             Ceeeeee-cCCCceeeeeeeee----eehcccccccccccccc------------------------c------------
Q 005277          579 GRCVTPL-MGHTSCVWTLAYRF----LLLVTNAYLKISDKVST------------------------G------------  617 (704)
Q Consensus       579 ~~~~~~~-~~h~~~V~sl~~~~----~~~~~~~~~~~~~~~~~------------------------~------------  617 (704)
                      ++....+ .+|...|.++.|..    .....++.++++.....                        +            
T Consensus       356 ~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~  435 (611)
T 1nr0_A          356 GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA  435 (611)
T ss_dssp             CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEE
T ss_pred             CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEE
Confidence            9887766 57888888887731    11111112222211100                        0            


Q ss_pred             -----ee--eeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc
Q 005277          618 -----FL--FYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR  690 (704)
Q Consensus       618 -----~~--~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~  690 (704)
                           ..  ......+...+++|+|++|++|+.||+|++||+..+..             ..+.. ..|...|.+++|+|
T Consensus       436 ~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~-------------~~~~~-~~h~~~v~~v~fsp  501 (611)
T 1nr0_A          436 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV-------------SEVKT-IVHPAEITSVAFSN  501 (611)
T ss_dssp             EEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE-------------EEEEE-EECSSCEEEEEECT
T ss_pred             EEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce-------------eeeec-cCCCCceEEEEECC
Confidence                 00  00001233456799999999999999999999976432             11223 46888999999999


Q ss_pred             CCcEEEEeecCCC
Q 005277          691 RNLLFAAGALSKT  703 (704)
Q Consensus       691 ~g~~La~gs~dgt  703 (704)
                      +|.+||+|+.|++
T Consensus       502 dg~~las~s~d~~  514 (611)
T 1nr0_A          502 NGAFLVATDQSRK  514 (611)
T ss_dssp             TSSEEEEEETTSC
T ss_pred             CCCEEEEEcCCCC
Confidence            9999999999875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-39  Score=344.90  Aligned_cols=285  Identities=22%  Similarity=0.399  Sum_probs=234.0

Q ss_pred             EEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec-c-CC
Q 005277          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-Q-GH  420 (704)
Q Consensus       343 ~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h  420 (704)
                      +..++.+|.+.|.+++|+|+  +||+|+.||.|+||++....                          ......+ . +|
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~--------------------------~~~~~~~~~~~h   57 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD--------------------------FTLIDVLDETAH   57 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC--------------------------CEEEEEECTTCC
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC--------------------------eEEEEEEecCCc
Confidence            34567899999999999998  99999999999999986411                          1122223 3 49


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKL-------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~-------~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~  493 (704)
                      .++|.+++|+|++++|++|+.|++|++|++..       ...+..+.+|...|++++|+|++++|++|+.|++|++||++
T Consensus        58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred             cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence            99999999999999999999999999999853       34567788999999999999999999999999999999995


Q ss_pred             C----CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--cEEEEeecCCCCEEEEEEecC--CCEEEEE
Q 005277          494 R----IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSPD--GRYMASG  565 (704)
Q Consensus       494 ~----~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~~h~~~i~~l~~spd--g~~l~sg  565 (704)
                      .    .+.+..+.+|...|.+++|+|++.+|++|+.|++|++||..++  +++..+.+|.+.|.+++|+|+  +.+|++|
T Consensus       138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~  217 (330)
T 2hes_X          138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG  217 (330)
T ss_dssp             TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEE
T ss_pred             CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEE
Confidence            3    2456778899999999999999999999999999999999876  678889999999999999998  7799999


Q ss_pred             eCCCeEEEEeCCCC--------eeeeeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC
Q 005277          566 DEDGTIMMWDLASG--------RCVTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS  636 (704)
Q Consensus       566 ~~dg~I~iwdl~~~--------~~~~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  636 (704)
                      +.|++|++||+.++        .....+.+ |...|++++|                                  ++++ 
T Consensus       218 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~----------------------------------s~~~-  262 (330)
T 2hes_X          218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW----------------------------------GFNG-  262 (330)
T ss_dssp             ETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEE----------------------------------CTTS-
T ss_pred             eCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEE----------------------------------cCCC-
Confidence            99999999998764        34455554 8999999999                                  7554 


Q ss_pred             EEEEEeCCCcEEEEeCCCCccccccccccCccccccc-cccCCCCc-CeEEEEEcc--CCcEEEEeecCCC
Q 005277          637 LLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSL-KTLPTKST-PVYSLQFSR--RNLLFAAGALSKT  703 (704)
Q Consensus       637 ~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~-~V~~l~fs~--~g~~La~gs~dgt  703 (704)
                      +|++|+.||+|+||+..++..             ..+ .....|.. .|.+++|+|  ++.+||+|+.||+
T Consensus       263 ~l~s~~~dg~v~iw~~~~~~~-------------~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~  320 (330)
T 2hes_X          263 LIASVGADGVLAVYEEVDGEW-------------KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI  320 (330)
T ss_dssp             CEEEEETTSCEEEEEEETTEE-------------EEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred             EEEEEeCCCEEEEEEcCCCce-------------EEEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence            899999999999999875421             111 12345665 899999999  7899999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.3e-40  Score=354.29  Aligned_cols=281  Identities=20%  Similarity=0.259  Sum_probs=235.4

Q ss_pred             eeCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277          348 INTHNGLNCASISQDGSLVAGGFS------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~lasg~~------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (704)
                      ..|...|+|++|||||++||+|+.      ||.|++|+.......                        ........+|.
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~------------------------~~~~~~~~~~~   94 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN------------------------ESLCTAGVQTE   94 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C------------------------GGGCSEEEECS
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc------------------------eeEecccCCCC
Confidence            358889999999999999999998      677888886542111                        12233445688


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE----EeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV----CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~----~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~  497 (704)
                      ..|++++|+|++. +++++.||+|+|||+.+++...    ...+|..+|++++|+|++++|++|+.||+|++||+++++.
T Consensus        95 ~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~  173 (357)
T 4g56_B           95 AGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV  173 (357)
T ss_dssp             SCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE
T ss_pred             CCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            9999999999976 5667889999999998876543    3447999999999999999999999999999999999999


Q ss_pred             eEEeccCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecC-CCEEEEEeCCCeEEE
Q 005277          498 LRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPD-GRYMASGDEDGTIMM  573 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spd-g~~l~sg~~dg~I~i  573 (704)
                      +..+.+|...|.+++|+|++. ++++++.||+|++||+++++++..+.  .|...+++++|+|+ +.+|++|+.|+.|++
T Consensus       174 ~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~  253 (357)
T 4g56_B          174 LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL  253 (357)
T ss_dssp             EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred             EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeE
Confidence            999999999999999999874 78999999999999999988776543  56778999999997 568999999999999


Q ss_pred             EeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC-CEEEEEeCCCcEEEEeC
Q 005277          574 WDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG-SLLASGSADCTVKLWDV  652 (704)
Q Consensus       574 wdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~lasgs~Dg~V~iWd~  652 (704)
                      ||+++++.+..+.+|...|++++|                                  +|++ ++|++|+.||+|+|||+
T Consensus       254 wd~~~~~~~~~~~~~~~~v~~l~~----------------------------------sp~~~~~lasgs~D~~i~iwd~  299 (357)
T 4g56_B          254 VNIKNPDSAQTSAVHSQNITGLAY----------------------------------SYHSSPFLASISEDCTVAVLDA  299 (357)
T ss_dssp             EESSCGGGCEEECCCSSCEEEEEE----------------------------------CSSSSCCEEEEETTSCEEEECT
T ss_pred             EECCCCcEeEEEeccceeEEEEEE----------------------------------cCCCCCEEEEEeCCCEEEEEEC
Confidence            999999999999999999999999                                  8887 68999999999999999


Q ss_pred             CCCccccccccccCccccccccccCCCCcCeEEEEEcc-CCcEEEEeecCCC
Q 005277          653 TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RNLLFAAGALSKT  703 (704)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~-~g~~La~gs~dgt  703 (704)
                      .+++..                ....|..+|++|+|+| ++.+||+|+.||+
T Consensus       300 ~~~~~~----------------~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~  335 (357)
T 4g56_B          300 DFSEVF----------------RDLSHRDFVTGVAWSPLDHSKFTTVGWDHK  335 (357)
T ss_dssp             TSCEEE----------------EECCCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             CCCcEe----------------EECCCCCCEEEEEEeCCCCCEEEEEcCCCe
Confidence            876432                2236889999999998 7999999999986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3e-39  Score=350.34  Aligned_cols=298  Identities=26%  Similarity=0.437  Sum_probs=246.4

Q ss_pred             EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      ....+|.+.|+|++|||||++||+|+ ++.++||++................          .............+...|
T Consensus        58 ~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~v  126 (393)
T 1erj_A           58 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN----------KDPENLNTSSSPSSDLYI  126 (393)
T ss_dssp             EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------------------------CCCCBE
T ss_pred             EEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc----------cccccccccccCCCceeE
Confidence            34457999999999999999999986 7899999987643322111100000          000000111112344569


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      .+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|++++|+|++.+|++|+.|++|++||+++++....+. +
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~  205 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-I  205 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-c
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988877776 5


Q ss_pred             CCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEe-------ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          505 LSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIF-------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       505 ~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~-------~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                      ...+.+++|+| ++++|++|+.||.|++||++++..+..+       .+|...|.+++|+|+|++|++|+.||.|++||+
T Consensus       206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~  285 (393)
T 1erj_A          206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL  285 (393)
T ss_dssp             SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            67899999999 8999999999999999999999888776       579999999999999999999999999999999


Q ss_pred             CCC------------eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277          577 ASG------------RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD  644 (704)
Q Consensus       577 ~~~------------~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D  644 (704)
                      ++.            .+...+.+|...|.++.|                                  ++++.+|++|+.|
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~----------------------------------~~~~~~l~sgs~D  331 (393)
T 1erj_A          286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT----------------------------------TQNDEYILSGSKD  331 (393)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEE----------------------------------CGGGCEEEEEETT
T ss_pred             CCCCCcccccCCCCCcceEEEecccCcEEEEEE----------------------------------CCCCCEEEEEeCC
Confidence            763            345567789999999999                                  9999999999999


Q ss_pred             CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc------CCcEEEEeecCCC
Q 005277          645 CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR------RNLLFAAGALSKT  703 (704)
Q Consensus       645 g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~------~g~~La~gs~dgt  703 (704)
                      |.|++||+.++..               +..+.+|...|.+++|++      ++.+||+|+.||+
T Consensus       332 ~~v~iwd~~~~~~---------------~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~  381 (393)
T 1erj_A          332 RGVLFWDKKSGNP---------------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK  381 (393)
T ss_dssp             SEEEEEETTTCCE---------------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             CeEEEEECCCCeE---------------EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence            9999999988653               456678999999999986      7899999999985

>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1

Probab=100.00  E-value=4e-42  Score=307.62  Aligned_cols=134  Identities=31%  Similarity=0.694  Sum_probs=127.8

Q ss_pred             ChhhHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChh
Q 005277           63 GPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPS  142 (704)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~  142 (704)
                      -|+.|+++|.+|++||++|||+||+||++|||||||||||+||++|+.++|++||++|+++|+.+ .++|++|++|++|+
T Consensus         4 ~~~~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e   82 (138)
T 2j4b_A            4 MKDQMETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQ   82 (138)
T ss_dssp             ---CHHHHHHHHHHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHH
T ss_pred             hHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             hhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhcCcchHHHhhcceeEEEEccC
Q 005277          143 HLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPG  197 (704)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~  197 (704)
                      |+++|++++.||+|||+|+||++++++|++||+++++.+|++|||+||+|++++|
T Consensus        83 ~l~~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~~~~~~ll~Iin~~i~i~v~~g  137 (138)
T 2j4b_A           83 HIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHLDIKVYVG  137 (138)
T ss_dssp             HHHHCHHHHHHHHSCEEEEEEHHHHHHHHHHHHHTTCHHHHHHHHHHEEEEEECC
T ss_pred             HHhhCHHHHHHHhCCeEEEECHHHHHHHHHHHHHCCChHHHHHHHHheeeEeeCC
Confidence            9999999999999999999999999999999999999999999999999999876

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.1e-39  Score=340.32  Aligned_cols=263  Identities=18%  Similarity=0.394  Sum_probs=244.8

Q ss_pred             cCeEeecCCCCCCe-EEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277          329 RNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (704)
Q Consensus       329 ~~~~~l~~~~~p~~-~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (704)
                      ...+++|....... ..+++.+|...|.+++|++++.++++|+.|+.|++||+..                         
T Consensus        57 D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~-------------------------  111 (321)
T 3ow8_A           57 DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN-------------------------  111 (321)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-------------------------
T ss_pred             CCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC-------------------------
Confidence            45678887654443 3456789999999999999999999999999999999875                         


Q ss_pred             CCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeE
Q 005277          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (704)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i  487 (704)
                         ......+.+|...+.+++|+|++++|++|+.||.|++|++.+++....+..|...|.+++|+|++++|++|+.||.|
T Consensus       112 ---~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i  188 (321)
T 3ow8_A          112 ---GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII  188 (321)
T ss_dssp             ---TEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ---CCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeE
Confidence               23445566788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      ++||+++++.+..+.+|...|.+++|+|++++|++|+.|++|++||++++..+..+.+|...|.+++|+|+|++|++|+.
T Consensus       189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  268 (321)
T 3ow8_A          189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS  268 (321)
T ss_dssp             EEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcE
Q 005277          568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV  647 (704)
Q Consensus       568 dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V  647 (704)
                      ||.|++||+.+++++..+.+|...|++++|                                  ++++.+|++++.||+|
T Consensus       269 D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~----------------------------------s~~g~~l~s~~~d~~i  314 (321)
T 3ow8_A          269 DKSVKVWDVGTRTCVHTFFDHQDQVWGVKY----------------------------------NGNGSKIVSVGDDQEI  314 (321)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEE----------------------------------CTTSSEEEEEETTCCE
T ss_pred             CCcEEEEeCCCCEEEEEEcCCCCcEEEEEE----------------------------------CCCCCEEEEEeCCCeE
Confidence            999999999999999999999999999999                                  9999999999999999


Q ss_pred             EEEeCC
Q 005277          648 KLWDVT  653 (704)
Q Consensus       648 ~iWd~~  653 (704)
                      +|||+.
T Consensus       315 ~vwd~p  320 (321)
T 3ow8_A          315 HIYDCP  320 (321)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            999973

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.5e-39  Score=351.84  Aligned_cols=262  Identities=28%  Similarity=0.526  Sum_probs=242.5

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ...+++|+...... ..++.+|.+.|++++|+|++++||+|+.||+|+|||+..                          
T Consensus       129 Dg~i~vwd~~~~~~-~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~--------------------------  181 (410)
T 1vyh_C          129 DATIKVWDYETGDF-ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--------------------------  181 (410)
T ss_dssp             SSCEEEEETTTCCC-CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--------------------------
T ss_pred             CCeEEEEECCCCcE-EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------------------------
Confidence            34677887654332 346788999999999999999999999999999999865                          


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEE
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~  488 (704)
                        ......+.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+.+|...|.++.|+|++.++++|+.|++|+
T Consensus       182 --~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~  259 (410)
T 1vyh_C          182 --FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  259 (410)
T ss_dssp             --SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             --CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence              234566789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEeccCCCCeeEEEEcCC--------------------CCEEEEEECCCcEEEEeCCCCcEEEEeecCCC
Q 005277          489 IWSMDRIQPLRIMAGHLSDVDCVRWHIN--------------------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRS  548 (704)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~--------------------~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~  548 (704)
                      +||+.++.....+.+|...|.+++|+|+                    +.+|++|+.|++|++||++++.++..+.+|..
T Consensus       260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~  339 (410)
T 1vyh_C          260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  339 (410)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence            9999999999999999999999999996                    67899999999999999999999999999999


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF  628 (704)
Q Consensus       549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (704)
                      .|++++|+|+|++|++|+.||.|++||+.+++++..+.+|...|+++.|                               
T Consensus       340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~-------------------------------  388 (410)
T 1vyh_C          340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF-------------------------------  388 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE-------------------------------
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEE-------------------------------
Confidence            9999999999999999999999999999999999999999999999999                               


Q ss_pred             cccCCCCCEEEEEeCCCcEEEEeCC
Q 005277          629 GCASCEGSLLASGSADCTVKLWDVT  653 (704)
Q Consensus       629 ~~~s~~g~~lasgs~Dg~V~iWd~~  653 (704)
                         +|++.+|++|+.||+|+||++.
T Consensus       389 ---~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          389 ---HKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             ---CSSSSCEEEEETTSEEEEEC--
T ss_pred             ---cCCCCEEEEEeCCCcEEEEeCC
Confidence               9999999999999999999863

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.7e-38  Score=364.58  Aligned_cols=304  Identities=21%  Similarity=0.303  Sum_probs=247.6

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ...+++|... +..+..++.+|...|++++|+|||++||+|+.||+|+|||+..........                  
T Consensus       169 D~~v~lwd~~-~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~------------------  229 (611)
T 1nr0_A          169 DNTVAIFEGP-PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE------------------  229 (611)
T ss_dssp             TSCEEEEETT-TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB------------------
T ss_pred             CCeEEEEECC-CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeec------------------
Confidence            3467777643 345566788999999999999999999999999999999986532111000                  


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-------------------------------
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-------------------------------  457 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~-------------------------------  457 (704)
                         .......+|.+.|++++|+|++++|++++.|++|++||+.+++.+.                               
T Consensus       230 ---~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i  306 (611)
T 1nr0_A          230 ---DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI  306 (611)
T ss_dssp             ---CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred             ---cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence               0000123799999999999999999999999999999998776543                               


Q ss_pred             ------------EeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-c----------------------
Q 005277          458 ------------CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-A----------------------  502 (704)
Q Consensus       458 ------------~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~-~----------------------  502 (704)
                                  .+.+|...|++++|+|+|++|++++.|++|++||+.++.....+ .                      
T Consensus       307 ~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~  386 (611)
T 1nr0_A          307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW  386 (611)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEET
T ss_pred             EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEc
Confidence                        33578999999999999999999999999999998765433221 0                      


Q ss_pred             -----------------------------------------------------------cCCCCeeEEEEcCCCCEEEEE
Q 005277          503 -----------------------------------------------------------GHLSDVDCVRWHINCNYIATG  523 (704)
Q Consensus       503 -----------------------------------------------------------~~~~~V~~v~~~p~~~~l~tg  523 (704)
                                                                                 .|...+.+++|+|+|++|++|
T Consensus       387 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasg  466 (611)
T 1nr0_A          387 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVG  466 (611)
T ss_dssp             TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred             CCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEe
Confidence                                                                       123456789999999999999


Q ss_pred             ECCCcEEEEeCCCCcE--EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC-Ceeeee--ecCCCceeeeeeee
Q 005277          524 SSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTP--LMGHTSCVWTLAYR  598 (704)
Q Consensus       524 s~dg~I~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~-~~~~~~--~~~h~~~V~sl~~~  598 (704)
                      +.|++|++||+.++..  +.. .+|...|++++|+|+|++|++++.|+.|++||+.+ ++.+..  +.+|...|++++| 
T Consensus       467 s~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~f-  544 (611)
T 1nr0_A          467 GQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW-  544 (611)
T ss_dssp             ETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE-
T ss_pred             CCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEE-
Confidence            9999999999987653  333 68999999999999999999999999999999987 666554  3459999999999 


Q ss_pred             eeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCC
Q 005277          599 FLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT  678 (704)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~  678 (704)
                                                       +|+|++|++|+.|++|+|||+.++...             .+..+..
T Consensus       545 ---------------------------------spdg~~lasgs~D~~v~lW~~~~~~~~-------------~~~~~~~  578 (611)
T 1nr0_A          545 ---------------------------------SPDNVRLATGSLDNSVIVWNMNKPSDH-------------PIIIKGA  578 (611)
T ss_dssp             ---------------------------------CTTSSEEEEEETTSCEEEEETTCTTSC-------------CEEETTS
T ss_pred             ---------------------------------CCCCCEEEEEECCCcEEEEECCCcccc-------------cchhhcc
Confidence                                             999999999999999999999875421             1134557


Q ss_pred             C-CcCeEEEEEccCCcEEEEeecCCC
Q 005277          679 K-STPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       679 ~-~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      | ...|.+++|+|++. |++|+.|++
T Consensus       579 h~~~~v~~v~fs~d~~-l~s~~~D~~  603 (611)
T 1nr0_A          579 HAMSSVNSVIWLNETT-IVSAGQDSN  603 (611)
T ss_dssp             STTSCEEEEEEEETTE-EEEEETTSC
T ss_pred             CcccCeeEEEEcCCCE-EEEecCCCC
Confidence            7 78999999999999 999999986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.4e-38  Score=357.06  Aligned_cols=289  Identities=34%  Similarity=0.555  Sum_probs=260.6

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      ..+++|...  ......+.+|...|.+++|+|++++|++|+.||.|++|++..                           
T Consensus       284 ~~i~~w~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~---------------------------  334 (577)
T 2ymu_A          284 KTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---------------------------  334 (577)
T ss_dssp             SCEEEEETT--SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---------------------------
T ss_pred             CEEEEEeCC--CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC---------------------------
Confidence            456677643  334456778999999999999999999999999999999764                           


Q ss_pred             CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEE
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI  489 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~l  489 (704)
                        .....+.+|...|.+++|+|++++|++++.||+|++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus       335 --~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~  411 (577)
T 2ymu_A          335 --QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL  411 (577)
T ss_dssp             --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             --CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence              234556789999999999999999999999999999996 47788889999999999999999999999999999999


Q ss_pred             EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC
Q 005277          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG  569 (704)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg  569 (704)
                      ||. +++.+..+.+|...|.+++|+|++++|++++.|++|++||. +++.+..+.+|...|++++|+|+|++|++++.|+
T Consensus       412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~  489 (577)
T 2ymu_A          412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK  489 (577)
T ss_dssp             ECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred             EeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            996 56788888999999999999999999999999999999996 6778888999999999999999999999999999


Q ss_pred             eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                      .|++||. +++.+..+.+|...|++++|                                  +|+|++|++|+.||.|+|
T Consensus       490 ~i~iw~~-~~~~~~~~~~h~~~v~~l~~----------------------------------s~dg~~l~s~~~dg~v~l  534 (577)
T 2ymu_A          490 TVKLWNR-NGQLLQTLTGHSSSVRGVAF----------------------------------SPDGQTIASASDDKTVKL  534 (577)
T ss_dssp             EEEEEET-TSCEEEEEECCSSCEEEEEE----------------------------------CTTSSCEEEEETTSEEEE
T ss_pred             EEEEEcC-CCCEEEEEeCCCCCEEEEEE----------------------------------cCCCCEEEEEECcCEEEE
Confidence            9999994 78899999999999999999                                  999999999999999999


Q ss_pred             EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ||...                ..+..+.+|..+|.+++|+|||++|++|+.|++
T Consensus       535 wd~~~----------------~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~  572 (577)
T 2ymu_A          535 WNRNG----------------QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKT  572 (577)
T ss_dssp             ECTTS----------------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             EeCCC----------------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence            99632                235677889999999999999999999999986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.8e-38  Score=335.16  Aligned_cols=250  Identities=21%  Similarity=0.250  Sum_probs=217.7

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      ...+..+|++++|+|++ .|++|+.||.|+|||+.+....                        ......+.+|.+.|++
T Consensus        78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~------------------------~~~~~~~~~H~~~V~~  132 (344)
T 4gqb_B           78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETL------------------------IVSKFCKYEHDDIVST  132 (344)
T ss_dssp             EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC------------------------EEEEEEEECCSSCEEE
T ss_pred             eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce------------------------eEeeccccCCCCCEEE
Confidence            34567889999999985 6789999999999999763211                        1122345689999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEec--c
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMA--G  503 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~~~~~~~~--~  503 (704)
                      ++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|++ .+|++|+.|++|++||++++++...+.  .
T Consensus       133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  212 (344)
T 4gqb_B          133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA  212 (344)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce
Confidence            9999999999999999999999999999999999999999999999987 578999999999999999999888764  4


Q ss_pred             CCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEeCCCCee
Q 005277          504 HLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRC  581 (704)
Q Consensus       504 ~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~l~sg~~dg~I~iwdl~~~~~  581 (704)
                      +...+.+++|+|+ +++|++|+.||+|++||+++++++..+.+|...|++++|+|+| ++|++|+.||+|+|||+.++++
T Consensus       213 ~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~  292 (344)
T 4gqb_B          213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL  292 (344)
T ss_dssp             -CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred             eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence            5567999999985 6789999999999999999999999999999999999999998 5799999999999999999876


Q ss_pred             eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC-EEEEEeCCCcEEEEeCCCCc
Q 005277          582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS-LLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~lasgs~Dg~V~iWd~~~~~  656 (704)
                      + .+.+|.+.|++++|                                  +|++. +|++||.||+|++|++.+..
T Consensus       293 ~-~~~~H~~~V~~v~~----------------------------------sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          293 F-RSQAHRDFVRDATW----------------------------------SPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             E-EECCCSSCEEEEEE----------------------------------CSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             E-EEcCCCCCEEEEEE----------------------------------eCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            5 57899999999999                                  99875 67899999999999998753

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.1e-37  Score=330.93  Aligned_cols=263  Identities=24%  Similarity=0.380  Sum_probs=237.4

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ...+++|+..... +..++..|...|.+++|+|++++||+|+.|+.|++|++....                        
T Consensus        76 Dg~v~iWd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~------------------------  130 (340)
T 1got_B           76 DGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE------------------------  130 (340)
T ss_dssp             TTEEEEEETTTCC-EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS------------------------
T ss_pred             CCcEEEEECCCCC-cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC------------------------
Confidence            3577888765443 345667888999999999999999999999999999987521                        


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEE
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~  488 (704)
                      ........+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+|...|++++|+|++.++++|+.||+|+
T Consensus       131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~  209 (340)
T 1got_B          131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK  209 (340)
T ss_dssp             BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence            11234556789999999999998775 88999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec--CCCCEEEEEEecCCCEEEEEe
Q 005277          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h~~~i~~l~~spdg~~l~sg~  566 (704)
                      +||++++..+..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+..  +...|++++|+|+|++|++|+
T Consensus       210 ~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  289 (340)
T 1got_B          210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             EEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC
Confidence            999999999999999999999999999999999999999999999999988877653  234799999999999999999


Q ss_pred             CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT  646 (704)
Q Consensus       567 ~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~  646 (704)
                      .||.|++||+.+++.+..+.+|...|.++.|                                  +|+|.+|++|+.||+
T Consensus       290 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~----------------------------------s~dg~~l~s~s~D~~  335 (340)
T 1got_B          290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGV----------------------------------TDDGMAVATGSWDSF  335 (340)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEE----------------------------------CTTSSCEEEEETTSC
T ss_pred             CCCeEEEEEcccCcEeeEeecCCCcEEEEEE----------------------------------cCCCCEEEEEcCCcc
Confidence            9999999999999999999999999999999                                  999999999999999


Q ss_pred             EEEEe
Q 005277          647 VKLWD  651 (704)
Q Consensus       647 V~iWd  651 (704)
                      |+|||
T Consensus       336 i~iWd  340 (340)
T 1got_B          336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99997

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-37  Score=328.07  Aligned_cols=285  Identities=19%  Similarity=0.338  Sum_probs=257.8

Q ss_pred             CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC
Q 005277          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (704)
Q Consensus       340 p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (704)
                      .......+.+|.+.|+|++|+|++++|++|+.||.|+|||+..                            ......+.+
T Consensus        21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----------------------------~~~~~~~~~   72 (369)
T 3zwl_B           21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN----------------------------GERLGTLDG   72 (369)
T ss_dssp             CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT----------------------------CCEEEEECC
T ss_pred             cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----------------------------chhhhhhhh
Confidence            3456677899999999999999999999999999999999875                            235566788


Q ss_pred             CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC-----CeEEEEECCC
Q 005277          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDR  494 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d-----g~i~lwd~~~  494 (704)
                      |.+.|.+++|+|++++|++++.||+|++||+.+++.+..+. |..+|.+++|+|++.++++++.+     |.|++||+..
T Consensus        73 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~  151 (369)
T 3zwl_B           73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER  151 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred             cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecC
Confidence            99999999999999999999999999999999999998888 88899999999999999999999     9999999976


Q ss_pred             Cc-----------eeEEeccCCC--CeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEecCCC
Q 005277          495 IQ-----------PLRIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGR  560 (704)
Q Consensus       495 ~~-----------~~~~~~~~~~--~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~  560 (704)
                      ..           .+..+..|..  .+.+++|+|++++|++|+.||.|++||+++ +..+..+..|...|.+++|+|+++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  231 (369)
T 3zwl_B          152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT  231 (369)
T ss_dssp             CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             CccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC
Confidence            43           4455556666  899999999999999999999999999998 788899999999999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE
Q 005277          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS  640 (704)
Q Consensus       561 ~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las  640 (704)
                      +|++++.||.|++||+++++.+..+. +...+.++.|                                  +|++.++++
T Consensus       232 ~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~----------------------------------~~~~~~l~~  276 (369)
T 3zwl_B          232 YFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVI----------------------------------TPLKEFIIL  276 (369)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEE----------------------------------CSSSSEEEE
T ss_pred             EEEEecCCceEEEEECCCCceeeeec-CCCCceeEEe----------------------------------cCCCceEEE
Confidence            99999999999999999999888887 7788899999                                  999999999


Q ss_pred             EeCCC--------------cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          641 GSADC--------------TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       641 gs~Dg--------------~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ++.++              .|++||+.++..               +..+..|..+|.+++|+|++.+|++|+.||+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  338 (369)
T 3zwl_B          277 GGGQEAKDVTTTSANEGKFEARFYHKIFEEE---------------IGRVQGHFGPLNTVAISPQGTSYASGGEDGF  338 (369)
T ss_dssp             EECCC-------------CEEEEEETTTCCE---------------EEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eecCCCceEEEEecCCCcceeEEEecCCCcc---------------hhheecccCcEEEEEECCCCCEEEEEcCCCe
Confidence            99998              899999887643               4566778999999999999999999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.4e-37  Score=322.59  Aligned_cols=294  Identities=23%  Similarity=0.375  Sum_probs=250.9

Q ss_pred             EEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          345 YTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      .++.+|.+.|+|++|+|+ +++||+|+.||+|+|||+.....                       ........+.+|...
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~-----------------------~~~~~~~~l~~h~~~   88 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET-----------------------NYGIPQRALRGHSHF   88 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS-----------------------CSEEEEEEECCCSSC
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc-----------------------ccceeeEEEeCCCCC
Confidence            468899999999999998 68999999999999999875221                       112345678899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-EEec
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-RIMA  502 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~-~~~~  502 (704)
                      |.+++|+|++++|++++.|+.|++|+............+...+..+.+++++.+|++|+.|+.+++||+...... ....
T Consensus        89 V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~  168 (340)
T 4aow_A           89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE  168 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred             EEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEec
Confidence            999999999999999999999999999999998888889999999999999999999999999999999876543 3456


Q ss_pred             cCCCCeeEEEEcCCC--CEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          503 GHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~--~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      +|...+.+++|++++  .++++++.|+.|++||+++++.+..+.+|.+.|++++|+|+|++|++|+.||.|++||+++++
T Consensus       169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~  248 (340)
T 4aow_A          169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK  248 (340)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence            789999999999764  678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277          581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK  660 (704)
Q Consensus       581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~  660 (704)
                      .+..+..+ ..|.++.|                                  +|++.+ ++++.|+.|++||+.+......
T Consensus       249 ~~~~~~~~-~~v~~~~~----------------------------------~~~~~~-~~~~~d~~i~iwd~~~~~~~~~  292 (340)
T 4aow_A          249 HLYTLDGG-DIINALCF----------------------------------SPNRYW-LCAATGPSIKIWDLEGKIIVDE  292 (340)
T ss_dssp             EEEEEECS-SCEEEEEE----------------------------------CSSSSE-EEEEETTEEEEEETTTTEEEEE
T ss_pred             eeeeecCC-ceEEeeec----------------------------------CCCCce-eeccCCCEEEEEECCCCeEEEe
Confidence            98888755 57888888                                  887754 5566799999999988765433


Q ss_pred             cccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          661 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       661 ~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ....      ........|...|++++|+|+|.+|++|+.||+
T Consensus       293 ~~~~------~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~  329 (340)
T 4aow_A          293 LKQE------VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL  329 (340)
T ss_dssp             ECCC-------------CCCCCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccc------ceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence            3221      122345578899999999999999999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.5e-36  Score=319.25  Aligned_cols=284  Identities=20%  Similarity=0.333  Sum_probs=250.6

Q ss_pred             EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      .....+|.+.|++++|+|++++|++|+ ||.|++|++.......                       ........+|...
T Consensus        44 ~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~-----------------------~~~~~~~~~~~~~   99 (337)
T 1gxr_A           44 QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS-----------------------PVSQLDCLNRDNY   99 (337)
T ss_dssp             EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS-----------------------CSEEEECSCTTSB
T ss_pred             cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee-----------------------eeecccccCCCCc
Confidence            344568999999999999999999998 9999999987522110                       1111223378999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      |.+++|+|++++|++++.||.|++||+.+++  ....+..|...|++++|+|+++++++++.||.|++||+++++.+..+
T Consensus       100 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~  179 (337)
T 1gxr_A          100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Confidence            9999999999999999999999999999887  56778889999999999999999999999999999999999999999


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~  581 (704)
                      ..|...|.+++|+|++++|++++.||.|++||+++++.+..+ .+...+.+++|+|+|++|++++.||.|++||+.+++.
T Consensus       180 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~  258 (337)
T 1gxr_A          180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe
Confidence            999999999999999999999999999999999999988877 4778899999999999999999999999999998865


Q ss_pred             eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277          582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT  661 (704)
Q Consensus       582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~  661 (704)
                       ..+..|...|.++.|                                  +|++++|++++.||.|++||+.++...   
T Consensus       259 -~~~~~~~~~v~~~~~----------------------------------~~~~~~l~~~~~dg~i~~~~~~~~~~~---  300 (337)
T 1gxr_A          259 -YQLHLHESCVLSLKF----------------------------------AYCGKWFVSTGKDNLLNAWRTPYGASI---  300 (337)
T ss_dssp             -EEECCCSSCEEEEEE----------------------------------CTTSSEEEEEETTSEEEEEETTTCCEE---
T ss_pred             -EEEcCCccceeEEEE----------------------------------CCCCCEEEEecCCCcEEEEECCCCeEE---
Confidence             467789999999999                                  999999999999999999999887542   


Q ss_pred             ccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          662 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       662 ~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                   ....+..+|.++.|+|++.+|++|+.||+
T Consensus       301 -------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  329 (337)
T 1gxr_A          301 -------------FQSKESSSVLSCDISVDDKYIVTGSGDKK  329 (337)
T ss_dssp             -------------EEEECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred             -------------EEecCCCcEEEEEECCCCCEEEEecCCCe
Confidence                         12246788999999999999999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.1e-36  Score=354.97  Aligned_cols=300  Identities=26%  Similarity=0.407  Sum_probs=248.4

Q ss_pred             EEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          345 YTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      -.+.+|.+.|+|++|+|+ +++|++|+.||+|+||++.....                       ........+.+|...
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~-----------------------~~~~~~~~~~~h~~~  432 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK-----------------------AYGVAQRRLTGHSHF  432 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT-----------------------CSCEEEEEEECCSSC
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc-----------------------ccccccceecCCCCc
Confidence            357799999999999987 57999999999999999875211                       012344667899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe--
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM--  501 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~--  501 (704)
                      |.+++|+|++++|++|+.||+|++||+.++..+..+.+|...|++++|+|++++|++|+.|++|++||+.........  
T Consensus       433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~  512 (694)
T 3dm0_A          433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG  512 (694)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999998765443332  


Q ss_pred             -ccCCCCeeEEEEcCCC--CEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          502 -AGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       502 -~~~~~~V~~v~~~p~~--~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                       .+|...|.|++|+|++  ..|++|+.|++|++||++++++...+.+|.+.|++++|+|+|++|++|+.||.|++||+++
T Consensus       513 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          513 GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred             CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence             3688899999999986  6899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277          579 GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~  658 (704)
                      ++.+..+.. ...|.++.|                                  +|++.++++++ |+.|+|||+.++..+
T Consensus       593 ~~~~~~~~~-~~~v~~~~~----------------------------------sp~~~~l~~~~-~~~i~iwd~~~~~~~  636 (694)
T 3dm0_A          593 GKKLYSLEA-NSVIHALCF----------------------------------SPNRYWLCAAT-EHGIKIWDLESKSIV  636 (694)
T ss_dssp             TEEEECCBC-SSCEEEEEE----------------------------------CSSSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred             CceEEEecC-CCcEEEEEE----------------------------------cCCCcEEEEEc-CCCEEEEECCCCCCh
Confidence            998887764 457888888                                  99998887776 566999999987765


Q ss_pred             cccccccCccc--c--ccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          659 LKTEEKSGTNR--L--RSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       659 ~~~~~~~~~~~--~--~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ...........  .  ........+...+.+++|+|+|.+|++|+.||+
T Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~  685 (694)
T 3dm0_A          637 EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV  685 (694)
T ss_dssp             EEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred             hhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence            43321100000  0  000011122234789999999999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-38  Score=339.91  Aligned_cols=314  Identities=18%  Similarity=0.304  Sum_probs=260.0

Q ss_pred             eEeecCCCCCCe-EEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          331 RVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       331 ~~~l~~~~~p~~-~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      .+++|....... .......|...|++++|+|++++||+|+.||.|++|++....                        .
T Consensus        46 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~------------------------~  101 (416)
T 2pm9_A           46 SLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN------------------------N  101 (416)
T ss_dssp             CCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTT------------------------S
T ss_pred             eEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccccc------------------------c
Confidence            566665543321 111234688899999999999999999999999999987511                        0


Q ss_pred             CccceeeccCCccCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc------eeE---EeecCCcCeeEEEEcCC-CCEE
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNA------NLV---CYKGHNYPVWDVQFNPQ-GHYF  478 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~Dg~I~lwd~~~~~------~~~---~~~~h~~~V~~v~~sp~-~~~l  478 (704)
                      .......+.+|.+.|.+++|+|+ +.+|++++.||+|++||+.++.      ...   ....|...|.+++|+|+ +.+|
T Consensus       102 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  181 (416)
T 2pm9_A          102 AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVF  181 (416)
T ss_dssp             CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEE
T ss_pred             cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEE
Confidence            12355677889999999999998 8899999999999999999876      333   24679999999999998 7899


Q ss_pred             EEEeCCCeEEEEECCCCceeEEeccC------CCCeeEEEEcCCC-CEEEEEECCC---cEEEEeCCCC-cEEEEee-cC
Q 005277          479 ASSSHDRTARIWSMDRIQPLRIMAGH------LSDVDCVRWHINC-NYIATGSSDK---TVRLWDVSSG-ECVRIFI-GH  546 (704)
Q Consensus       479 ~sgs~dg~i~lwd~~~~~~~~~~~~~------~~~V~~v~~~p~~-~~l~tgs~dg---~I~iwd~~~~-~~~~~~~-~h  546 (704)
                      ++++.||.|++||+++++.+..+..+      ...|.+++|+|++ .++++++.|+   .|++||++++ .++..+. +|
T Consensus       182 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~  261 (416)
T 2pm9_A          182 ASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH  261 (416)
T ss_dssp             EEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC
T ss_pred             EEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc
Confidence            99999999999999999998888876      7899999999997 6999999998   9999999986 6777787 89


Q ss_pred             CCCEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277          547 RSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI  625 (704)
Q Consensus       547 ~~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (704)
                      ...|.+++|+| ++++|++++.||.|++||+.+++.+..+.+|...|.++.|                            
T Consensus       262 ~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~----------------------------  313 (416)
T 2pm9_A          262 QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKF----------------------------  313 (416)
T ss_dssp             SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEE----------------------------
T ss_pred             cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEE----------------------------
Confidence            99999999999 9999999999999999999999999999999999999999                            


Q ss_pred             EeecccCCCC-CEEEEEeCCCcEEEEeCCCCcccccccc--------------------c-cCccccccccccCCCCcCe
Q 005277          626 IYFGCASCEG-SLLASGSADCTVKLWDVTTSTKVLKTEE--------------------K-SGTNRLRSLKTLPTKSTPV  683 (704)
Q Consensus       626 ~~~~~~s~~g-~~lasgs~Dg~V~iWd~~~~~~~~~~~~--------------------~-~~~~~~~~l~~~~~~~~~V  683 (704)
                            +|++ .+|++++.||.|++|++.+.........                    . ....... +.....+..+|
T Consensus       314 ------s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  386 (416)
T 2pm9_A          314 ------APEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFH-LQAPTWYGEPS  386 (416)
T ss_dssp             ------CTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSC-CCCCSTTCCCS
T ss_pred             ------CCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccccc-ccCCccccCCc
Confidence                  9998 8999999999999999988764332211                    0 0000001 12223367889


Q ss_pred             EEEEEccCCcEEEEeecCCC
Q 005277          684 YSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       684 ~~l~fs~~g~~La~gs~dgt  703 (704)
                      .+++|+|+|++||+|+.||+
T Consensus       387 ~~~~~s~dg~~la~~~~d~~  406 (416)
T 2pm9_A          387 PAAHWAFGGKLVQITPDGKG  406 (416)
T ss_dssp             CCCEEETTTEEECBCTTSSC
T ss_pred             cceEEeeCCeEEEEeCCCCe
Confidence            99999999999999999885

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.8e-37  Score=333.72  Aligned_cols=301  Identities=17%  Similarity=0.213  Sum_probs=252.4

Q ss_pred             EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      ..++.+|.+.|+|++|+|  ++|++|+.||.|+||++......                      ........+.+|..+
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~----------------------~~~~~~~~~~~h~~~   64 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE----------------------NPKDKSYSHFVHKSG   64 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC----------------------CGGGGEEEEECCTTC
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc----------------------cCCCcceEEecCCCc
Confidence            345678999999999999  89999999999999998763210                      012345667799999


Q ss_pred             eEEEEEcCC----C---CEEEEEeCCCeEEEEeCCCCce-----eEEeecC-----CcCeeEEEEc----CCCCE-EEEE
Q 005277          424 VYSASFSPL----G---DFILSSSADTTIRLWSTKLNAN-----LVCYKGH-----NYPVWDVQFN----PQGHY-FASS  481 (704)
Q Consensus       424 V~~l~~sp~----~---~~l~s~s~Dg~I~lwd~~~~~~-----~~~~~~h-----~~~V~~v~~s----p~~~~-l~sg  481 (704)
                      |.+++|+|+    +   ++|++++.||.|++|++.++..     ...+..|     ...|++++|+    |++.+ |++|
T Consensus        65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~  144 (397)
T 1sq9_A           65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT  144 (397)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE
T ss_pred             EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE
Confidence            999999999    9   9999999999999999998887     8888888     5899999999    99999 9999


Q ss_pred             eCCCeEEEEECCC------CceeE-----Ee-------ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe
Q 005277          482 SHDRTARIWSMDR------IQPLR-----IM-------AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF  543 (704)
Q Consensus       482 s~dg~i~lwd~~~------~~~~~-----~~-------~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~  543 (704)
                      +.||.|++||+++      .+.+.     .+       ..|...|.+++|+|++ +|++|+.||.|++||+++++.+..+
T Consensus       145 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  223 (397)
T 1sq9_A          145 DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF  223 (397)
T ss_dssp             ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE
Confidence            9999999999988      66655     66       4488999999999999 9999999999999999999999999


Q ss_pred             ec---C---CCCEEEEEEecCCCEEEEEeCC---CeEEEEeCCCCeeeeeecC-------------CCceeeeeeeeeee
Q 005277          544 IG---H---RSMILSLAMSPDGRYMASGDED---GTIMMWDLASGRCVTPLMG-------------HTSCVWTLAYRFLL  601 (704)
Q Consensus       544 ~~---h---~~~i~~l~~spdg~~l~sg~~d---g~I~iwdl~~~~~~~~~~~-------------h~~~V~sl~~~~~~  601 (704)
                      ..   |   ...|.+++|+|++++|++++.|   |.|++||+++++.+..+.+             |...|.++.|    
T Consensus       224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----  299 (397)
T 1sq9_A          224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF----  299 (397)
T ss_dssp             ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE----
T ss_pred             eccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEE----
Confidence            98   9   9999999999999999999999   9999999999999999988             9999999999    


Q ss_pred             hccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccccc---C---ccccccccc
Q 005277          602 LVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS---G---TNRLRSLKT  675 (704)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~---~---~~~~~~l~~  675 (704)
                                                    +|++++|++|+.||.|++||+.++..+.......   .   .........
T Consensus       300 ------------------------------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  349 (397)
T 1sq9_A          300 ------------------------------NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG  349 (397)
T ss_dssp             ------------------------------CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred             ------------------------------CCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccc
Confidence                                          9999999999999999999999876543332100   0   000000001


Q ss_pred             cCCCCcCeEEEEEccCC----------cEEEEeecCCC
Q 005277          676 LPTKSTPVYSLQFSRRN----------LLFAAGALSKT  703 (704)
Q Consensus       676 ~~~~~~~V~~l~fs~~g----------~~La~gs~dgt  703 (704)
                      ...|..+|.+++|+|++          .+|++|+.||+
T Consensus       350 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~  387 (397)
T 1sq9_A          350 DSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS  387 (397)
T ss_dssp             CBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE
T ss_pred             ccccCCceeEEEeccccccccccccccceEEEecCCCc
Confidence            12238999999999998          79999999874

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8.6e-37  Score=317.77  Aligned_cols=249  Identities=23%  Similarity=0.391  Sum_probs=217.5

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      .+.+|.+.|++++|+|+|++||+|+.||.|+||++...                          .......+.+|.++|.
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~--------------------------~~~~~~~l~gH~~~V~   57 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW   57 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS--------------------------CBCCCEEECCCSSCEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC--------------------------CcEEEEEEccccCCeE
Confidence            46689999999999999999999999999999998641                          1234567889999999


Q ss_pred             EEEEcCC--CCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEEEEECCCCc--e
Q 005277          426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQ--P  497 (704)
Q Consensus       426 ~l~~sp~--~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~lwd~~~~~--~  497 (704)
                      +++|+|+  +++|++|+.||+|++||+.++.  .+..+.+|...|.+++|+|+  +.+|++|+.|++|++||++...  .
T Consensus        58 ~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~  137 (297)
T 2pm7_B           58 RVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS  137 (297)
T ss_dssp             EEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC
T ss_pred             EEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee
Confidence            9999864  8899999999999999998774  56677889999999999997  8999999999999999998753  2


Q ss_pred             eEEeccCCCCeeEEEEcCC-------------CCEEEEEECCCcEEEEeCCCCc----EEEEeecCCCCEEEEEEecCC-
Q 005277          498 LRIMAGHLSDVDCVRWHIN-------------CNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDG-  559 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~-------------~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~i~~l~~spdg-  559 (704)
                      ...+.+|...|.+++|+|+             +++|++|+.|++|++||++++.    ....+.+|...|.+++|+|++ 
T Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~  217 (297)
T 2pm7_B          138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  217 (297)
T ss_dssp             CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC
Confidence            4667789999999999997             5799999999999999998876    667788999999999999985 


Q ss_pred             --CEEEEEeCCCeEEEEeCCCCe---eeeee--cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277          560 --RYMASGDEDGTIMMWDLASGR---CVTPL--MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS  632 (704)
Q Consensus       560 --~~l~sg~~dg~I~iwdl~~~~---~~~~~--~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  632 (704)
                        .+|++|+.|+.|+|||+.++.   ....+  ..|...|++++|                                  +
T Consensus       218 ~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------s  263 (297)
T 2pm7_B          218 LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW----------------------------------S  263 (297)
T ss_dssp             SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEE----------------------------------C
T ss_pred             CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEE----------------------------------C
Confidence              899999999999999998743   11223  568889999999                                  9


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCC
Q 005277          633 CEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       633 ~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                      |+|++|++|+.||+|+||+...
T Consensus       264 ~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          264 LSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SSSCCEEEEETTSCEEEEEECT
T ss_pred             CCCCEEEEEcCCCcEEEEEECC
Confidence            9999999999999999999764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.5e-37  Score=319.77  Aligned_cols=244  Identities=22%  Similarity=0.352  Sum_probs=222.4

Q ss_pred             ceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005277          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (704)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~  492 (704)
                      ....+.+|.+.|++++|+|++++|++|+.||+|++||+.++..+..+..|..+|.+++|+|+++++++|+.|++|++||+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            44667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-cEEEEeecCCCCEEEEEEec-CCCEEEEEeCCCe
Q 005277          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGT  570 (704)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~i~~l~~sp-dg~~l~sg~~dg~  570 (704)
                      .+++.+..+.+|...|.+++|+|++++|++|+.||+|++||++++ .....+.+|...|.+++|+| ++.+|++|+.||.
T Consensus        85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~  164 (304)
T 2ynn_A           85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (304)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence            999999999999999999999999999999999999999999987 55677889999999999999 6889999999999


Q ss_pred             EEEEeCCCCeeeeeec-CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          571 IMMWDLASGRCVTPLM-GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       571 I~iwdl~~~~~~~~~~-~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                      |++||++++.....+. +|...+..+.|.+                                .+++.+|++|+.||+|++
T Consensus       165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--------------------------------~~~~~~l~s~s~D~~i~i  212 (304)
T 2ynn_A          165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYP--------------------------------LPDKPYMITASDDLTIKI  212 (304)
T ss_dssp             EEEEETTCSSCSEEEECCCTTCEEEEEECC--------------------------------STTCCEEEEEETTSEEEE
T ss_pred             EEEEECCCCCccceeccCCcCcEEEEEEEE--------------------------------cCCCCEEEEEcCCCeEEE
Confidence            9999998887665554 5667888888721                                457889999999999999


Q ss_pred             EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ||+.++.               ++..+.+|...|.+++|+|++.+|++|+.||+
T Consensus       213 Wd~~~~~---------------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~  251 (304)
T 2ynn_A          213 WDYQTKS---------------CVATLEGHMSNVSFAVFHPTLPIIISGSEDGT  251 (304)
T ss_dssp             EETTTTE---------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred             EeCCCCc---------------cceeeCCCCCCEEEEEECCCCCEEEEEcCCCe
Confidence            9998764               35667789999999999999999999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.6e-36  Score=322.41  Aligned_cols=266  Identities=27%  Similarity=0.363  Sum_probs=237.4

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ...+++|+.... .....+..|...|.+++|+|+|.+||+|+.|+.|++|++......                      
T Consensus        85 Dg~v~vWd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~----------------------  141 (354)
T 2pbi_B           85 DGKVIVWDSFTT-NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE----------------------  141 (354)
T ss_dssp             TSEEEEEETTTC-CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC----------------------
T ss_pred             CCeEEEEECCCC-CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc----------------------
Confidence            357888875443 334556778889999999999999999999999999998642110                      


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCe
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRT  486 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~  486 (704)
                      ........+.+|.+.|.+++|+|++..|++++.|++|++||+.+++.+..+.+|...|.+++|+|  ++.+|++|+.||+
T Consensus       142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~  221 (354)
T 2pbi_B          142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK  221 (354)
T ss_dssp             CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred             cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence            01123455668999999999999999999999999999999999999999999999999999988  5789999999999


Q ss_pred             EEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC--CCCEEEEEEecCCCEEEE
Q 005277          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~i~~l~~spdg~~l~s  564 (704)
                      |++||+++++++..+.+|...|.+++|+|++++|++|+.|++|++||+++++.+..+..+  ...+.+++|+|+|++|++
T Consensus       222 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~  301 (354)
T 2pbi_B          222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA  301 (354)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999888777644  347899999999999999


Q ss_pred             EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD  644 (704)
Q Consensus       565 g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D  644 (704)
                      |+.||.|++||+.+++.+..+.+|...|++++|                                  +|+|.+|++|+.|
T Consensus       302 g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~----------------------------------spdg~~l~sgs~D  347 (354)
T 2pbi_B          302 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRV----------------------------------SPDGTAFCSGSWD  347 (354)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSCEEEEEE----------------------------------CTTSSCEEEEETT
T ss_pred             EECCCcEEEEECCCCceEEEEECCCCcEEEEEE----------------------------------CCCCCEEEEEcCC
Confidence            999999999999999999999999999999999                                  9999999999999


Q ss_pred             CcEEEEe
Q 005277          645 CTVKLWD  651 (704)
Q Consensus       645 g~V~iWd  651 (704)
                      |+|+||+
T Consensus       348 ~~v~vW~  354 (354)
T 2pbi_B          348 HTLRVWA  354 (354)
T ss_dssp             SEEEEEC
T ss_pred             CCEEecC
Confidence            9999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.6e-36  Score=342.06  Aligned_cols=289  Identities=34%  Similarity=0.572  Sum_probs=259.7

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      ..+++|+...  ....++.+|...|++++|+|++++|++|+.|+.|++|+...                           
T Consensus       243 ~~i~~w~~~~--~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~---------------------------  293 (577)
T 2ymu_A          243 KTVKLWNRNG--QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG---------------------------  293 (577)
T ss_dssp             SCEEEECTTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---------------------------
T ss_pred             CEEEEEeCCC--CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---------------------------
Confidence            4677777543  34556788999999999999999999999999999999653                           


Q ss_pred             CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEE
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI  489 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~l  489 (704)
                        .....+.+|.+.|.+++|+|++++|++++.||+|++||+. +..+..+.+|..+|++++|+|++.++++|+.||.+++
T Consensus       294 --~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~  370 (577)
T 2ymu_A          294 --QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL  370 (577)
T ss_dssp             --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             --cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence              3445678899999999999999999999999999999986 5567778899999999999999999999999999999


Q ss_pred             EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC
Q 005277          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG  569 (704)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg  569 (704)
                      ||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+
T Consensus       371 ~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~  448 (577)
T 2ymu_A          371 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK  448 (577)
T ss_dssp             EET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCC
Confidence            996 56778888999999999999999999999999999999995 6788888999999999999999999999999999


Q ss_pred             eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                      .|++||+ +++.+..+.+|...|.+++|                                  +|++++|++++.|+.|++
T Consensus       449 ~v~~w~~-~~~~~~~~~~~~~~v~~~~~----------------------------------spd~~~las~~~d~~i~i  493 (577)
T 2ymu_A          449 TVKLWNR-NGQLLQTLTGHSSSVRGVAF----------------------------------SPDGQTIASASDDKTVKL  493 (577)
T ss_dssp             EEEEEET-TSCEEEEEECCSSCEEEEEE----------------------------------CTTSCEEEEEETTSEEEE
T ss_pred             EEEEEEC-CCCEEEEEcCCCCCEEEEEE----------------------------------cCCCCEEEEEeCCCEEEE
Confidence            9999996 67788899999999999999                                  999999999999999999


Q ss_pred             EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ||...                ..+..+..|..+|++++|+|+|.+||+|+.||+
T Consensus       494 w~~~~----------------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~  531 (577)
T 2ymu_A          494 WNRNG----------------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT  531 (577)
T ss_dssp             EETTS----------------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             EcCCC----------------CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE
Confidence            99643                235567789999999999999999999999874

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-36  Score=330.12  Aligned_cols=289  Identities=16%  Similarity=0.293  Sum_probs=252.6

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      |.+.|+|++|+|++++|++|+.||.|++|+...                             .....+.+|..+|.+++|
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~-----------------------------~~~~~~~~~~~~v~~~~~  157 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG-----------------------------ALLNVLNFHRAPIVSVKW  157 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETTS-----------------------------CEEEEECCCCSCEEEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----------------------------CeeeeccCCCccEEEEEE
Confidence            567999999999999999999999999999432                             345567789999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcC---------------eeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP---------------VWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---------------V~~v~~sp~~~~l~sgs~dg~i~lwd~~~  494 (704)
                      +|++++|++++.||.|++||+.+++.+..+..+...               +.++.|+|++ .+++++.+|.|++||+++
T Consensus       158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~  236 (425)
T 1r5m_A          158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITE  236 (425)
T ss_dssp             CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTC
T ss_pred             CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCC
Confidence            999999999999999999999999999988888777               9999999875 588999999999999999


Q ss_pred             CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (704)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw  574 (704)
                      ++++..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+.+|...|.+++|+|++ ++++++.||.|++|
T Consensus       237 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~  315 (425)
T 1r5m_A          237 KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLW  315 (425)
T ss_dssp             SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred             CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             eCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          575 DLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       575 dl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                      |+.+++.+..+..|...|.++.|                                  +|++++|++|+.||.|++||+.+
T Consensus       316 d~~~~~~~~~~~~~~~~i~~~~~----------------------------------s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          316 SLKQNTLLALSIVDGVPIFAGRI----------------------------------SQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             ETTTTEEEEEEECTTCCEEEEEE----------------------------------CTTSSEEEEEETTSCEEEEECHH
T ss_pred             ECCCCcEeEecccCCccEEEEEE----------------------------------cCCCCEEEEEECCCeEEEEECCC
Confidence            99999999999999999999999                                  99999999999999999999987


Q ss_pred             Cccccccccc-----cCccccccccccCCCCc--CeEEEEEccCCcEEEEeecCCC
Q 005277          655 STKVLKTEEK-----SGTNRLRSLKTLPTKST--PVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       655 ~~~~~~~~~~-----~~~~~~~~l~~~~~~~~--~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      +.........     ........+..+..+..  +|.+++|+|++.+|++|+.||+
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  417 (425)
T 1r5m_A          362 LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQE  417 (425)
T ss_dssp             HHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSC
T ss_pred             CccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCce
Confidence            5421111000     00011125667777866  9999999999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6e-37  Score=325.34  Aligned_cols=303  Identities=13%  Similarity=0.214  Sum_probs=251.7

Q ss_pred             CCCeEEEEEeeCCCCEEEEEEcCCCC-EEEEEeC---CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccce
Q 005277          339 LPSVSFYTFINTHNGLNCASISQDGS-LVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY  414 (704)
Q Consensus       339 ~p~~~~~~~~~~~~~V~~~~fs~dg~-~lasg~~---dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (704)
                      .|......+.+|...|++++|+|++. ++++|+.   ||.|+||++.+..                           ...
T Consensus         6 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~---------------------------~~~   58 (357)
T 3i2n_A            6 KPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD---------------------------LKL   58 (357)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS---------------------------EEE
T ss_pred             hhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc---------------------------ccc
Confidence            45666677788999999999999985 5566766   9999999987521                           111


Q ss_pred             eeccCCccCeEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCc-eeEEeecCCcCeeEEEE------cCCCCEEEEEeCC
Q 005277          415 TLYQGHSGPVYSASFSPL---GDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDVQF------NPQGHYFASSSHD  484 (704)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~---~~~l~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~v~~------sp~~~~l~sgs~d  484 (704)
                      ....+|..+|.+++|+|+   +.+|++|+.||.|++||+.+++ .+..+.+|...|.++.|      +|++++|++|+.|
T Consensus        59 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d  138 (357)
T 3i2n_A           59 LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD  138 (357)
T ss_dssp             EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred             eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCC
Confidence            223378999999999999   6999999999999999999988 88899999999999955      6799999999999


Q ss_pred             CeEEEEECCCCc-eeEEeccCCC----CeeEEE----EcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEE
Q 005277          485 RTARIWSMDRIQ-PLRIMAGHLS----DVDCVR----WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM  555 (704)
Q Consensus       485 g~i~lwd~~~~~-~~~~~~~~~~----~V~~v~----~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~  555 (704)
                      |.|++||++++. ++..+..|..    .+.+++    |+|++++|++|+.||.|++||+++++.... ..|...|.+++|
T Consensus       139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~  217 (357)
T 3i2n_A          139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEF  217 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEE
T ss_pred             CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEc
Confidence            999999999887 7788776555    788998    678999999999999999999999987554 578899999999


Q ss_pred             ec---CCCEEEEEeCCCeEEEEeCCCCeeeeeec-----CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277          556 SP---DGRYMASGDEDGTIMMWDLASGRCVTPLM-----GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY  627 (704)
Q Consensus       556 sp---dg~~l~sg~~dg~I~iwdl~~~~~~~~~~-----~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (704)
                      +|   ++.+|++|+.||.|++||+++++.+..+.     +|...|+++.|                              
T Consensus       218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~------------------------------  267 (357)
T 3i2n_A          218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH------------------------------  267 (357)
T ss_dssp             SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE------------------------------
T ss_pred             CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE------------------------------
Confidence            99   99999999999999999999887766555     89999999999                              


Q ss_pred             ecccCCCCC-EEEEEeCCCcEEEEeCCCCccccccccc----cCccccccccccCCCCcCeEEEEEccCCcEEE-EeecC
Q 005277          628 FGCASCEGS-LLASGSADCTVKLWDVTTSTKVLKTEEK----SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA-AGALS  701 (704)
Q Consensus       628 ~~~~s~~g~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La-~gs~d  701 (704)
                          +|++. +|++|+.||.|++||+..+.........    ........+..+..|..+|.+++|+|++.+|+ +|+.|
T Consensus       268 ----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d  343 (357)
T 3i2n_A          268 ----LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD  343 (357)
T ss_dssp             ----ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             ----CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCC
Confidence                99988 8999999999999999876543222111    11112245677888999999999999999998 79888


Q ss_pred             CC
Q 005277          702 KT  703 (704)
Q Consensus       702 gt  703 (704)
                      |+
T Consensus       344 ~~  345 (357)
T 3i2n_A          344 QT  345 (357)
T ss_dssp             SE
T ss_pred             Cc
Confidence            74

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.7e-36  Score=324.09  Aligned_cols=295  Identities=18%  Similarity=0.217  Sum_probs=247.5

Q ss_pred             eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      ..|.+.|+|++|+|++++||+|+.||.|++|++....                          ......+.+|.+.|.++
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~--------------------------~~~~~~~~~h~~~v~~~   58 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--------------------------WVQVHELKEHNGQVTGV   58 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE--------------------------EEEEEEEECCSSCEEEE
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc--------------------------EEeeeeecCCCCcccEE
Confidence            3488899999999999999999999999999987521                          12456677899999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce----eEEe
Q 005277          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP----LRIM  501 (704)
Q Consensus       428 ~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~----~~~~  501 (704)
                      +|+|++++|++++.||.|++||+.+++....  +..|...|.+++|+|++++|++|+.||.|++||++....    ....
T Consensus        59 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  138 (372)
T 1k8k_C           59 DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK  138 (372)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred             EEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee
Confidence            9999999999999999999999988865444  467899999999999999999999999999999988763    2333


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC------------------CCCcEEEEeecCCCCEEEEEEecCCCEEE
Q 005277          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV------------------SSGECVRIFIGHRSMILSLAMSPDGRYMA  563 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~------------------~~~~~~~~~~~h~~~i~~l~~spdg~~l~  563 (704)
                      .+|...|.+++|+|++++|++|+.||.|++||+                  ..++++..+.+|...|.+++|+|++++|+
T Consensus       139 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  218 (372)
T 1k8k_C          139 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  218 (372)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence            678899999999999999999999999999995                  46888999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277          564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA  643 (704)
Q Consensus       564 sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~  643 (704)
                      +++.||.|++||+++++.+..+..|...|.++.|                                  +|++.++++| .
T Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~----------------------------------~~~~~~l~~~-~  263 (372)
T 1k8k_C          219 WVSHDSTVCLADADKKMAVATLASETLPLLAVTF----------------------------------ITESSLVAAG-H  263 (372)
T ss_dssp             EEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEE----------------------------------EETTEEEEEE-T
T ss_pred             EEeCCCEEEEEECCCCceeEEEccCCCCeEEEEE----------------------------------ecCCCEEEEE-e
Confidence            9999999999999999999999999999999999                                  8999888888 8


Q ss_pred             CCcEEEEeCCC--Ccc--ccccccccC---------------ccccccc------ccc-CCCCcCeEEEEEc-cCC---c
Q 005277          644 DCTVKLWDVTT--STK--VLKTEEKSG---------------TNRLRSL------KTL-PTKSTPVYSLQFS-RRN---L  693 (704)
Q Consensus       644 Dg~V~iWd~~~--~~~--~~~~~~~~~---------------~~~~~~l------~~~-~~~~~~V~~l~fs-~~g---~  693 (704)
                      ||.|++|++..  +.-  .........               .......      ..+ ..|..+|.+++|+ ++|   .
T Consensus       264 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~  343 (372)
T 1k8k_C          264 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS  343 (372)
T ss_dssp             TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS
T ss_pred             CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee
Confidence            99999999987  320  000000000               0000011      233 4889999999976 666   9


Q ss_pred             EEEEeecCCC
Q 005277          694 LFAAGALSKT  703 (704)
Q Consensus       694 ~La~gs~dgt  703 (704)
                      +|++|+.||+
T Consensus       344 ~l~s~~~Dg~  353 (372)
T 1k8k_C          344 QFCTTGMDGG  353 (372)
T ss_dssp             EEEEEETTSE
T ss_pred             eEEEecCCCc
Confidence            9999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.2e-36  Score=325.72  Aligned_cols=289  Identities=15%  Similarity=0.178  Sum_probs=236.8

Q ss_pred             EEEEeeCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277          344 FYTFINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (704)
Q Consensus       344 ~~~~~~~~~~V~~~~fs~dg-~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (704)
                      ..++.+|...|+|++|+|++ ++||+|+.||.|+||++....                          ........+|.+
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------------~~~~~~~~~h~~  119 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN--------------------------KTSFIQGMGPGD  119 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT--------------------------CEEEECCCSTTC
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc--------------------------cceeeecCCcCC
Confidence            44678899999999999999 999999999999999987521                          112223357999


Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeecC---CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 005277          423 PVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGH---NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (704)
Q Consensus       423 ~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~  498 (704)
                      .|.+++|+| ++.+|++++.|++|++||+.. ..+..+..|   ...|.+++|+|++.+|++|+.||.|++||+ +++++
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~  197 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEI  197 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEE
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEE
Confidence            999999999 678999999999999999995 555566544   488999999999999999999999999999 56788


Q ss_pred             EEeccCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCC----CcEEEEeecCCCCEEEEEEec-CCCEEEEEeCCCeEE
Q 005277          499 RIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS----GECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIM  572 (704)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~I~iwd~~~----~~~~~~~~~h~~~i~~l~~sp-dg~~l~sg~~dg~I~  572 (704)
                      ..+.+|...|.+++|+|+++ +|++|+.|+.|++||+++    +.++..+ +|...|.+++|+| +|++|++++.||.|+
T Consensus       198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~  276 (383)
T 3ei3_B          198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIR  276 (383)
T ss_dssp             EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred             EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence            88999999999999999998 999999999999999997    6677766 7999999999999 999999999999999


Q ss_pred             EEeCCCCeeeeeecCCCc-------eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277          573 MWDLASGRCVTPLMGHTS-------CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC  645 (704)
Q Consensus       573 iwdl~~~~~~~~~~~h~~-------~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg  645 (704)
                      +||+++++.+..+.+|..       .+. ..|.+                       .......+++|++.+  +|+.||
T Consensus       277 iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p-----------------------~~~~~~~~~s~dg~~--s~s~d~  330 (383)
T 3ei3_B          277 VYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHP-----------------------MYDLIVAGRYPDDQL--LLNDKR  330 (383)
T ss_dssp             EEETTBTTSCSEEEECCBCCCTTSCCCC-CEECS-----------------------SSSEEEEECBCCTTT--CTTCCC
T ss_pred             EEECCCCccccccccccccccccccceE-EeccC-----------------------CCCceEEEecCCccc--ccCCCC
Confidence            999999888777765542       222 12200                       001111233788877  888999


Q ss_pred             cEEEEeCCCCccccccccccCccccccccccCC--CCcCeEEEEEccCCcEEEEeecCCC
Q 005277          646 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT--KSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       646 ~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      .|+|||+.++..+               ..+..  +...+..++|+|++.+|++|+ ||+
T Consensus       331 ~i~iwd~~~~~~~---------------~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~  374 (383)
T 3ei3_B          331 TIDIYDANSGGLV---------------HQLRDPNAAGIISLNKFSPTGDVLASGM-GFN  374 (383)
T ss_dssp             CEEEEETTTCCEE---------------EEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred             eEEEEecCCCcee---------------eeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence            9999999887643               33333  567788889999999999997 653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=333.83  Aligned_cols=301  Identities=18%  Similarity=0.291  Sum_probs=237.5

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc-------
Q 005277          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-------  421 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-------  421 (704)
                      .+.+.|+|++|+|+|++||+|+.||.|+||++........                 ...........+.+|.       
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~-----------------~~~~~~~~~~~~~~h~~~~~~~~   88 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS-----------------HSRGEYNVYSTFQSHEPEFDYLK   88 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C-----------------CCCCCEEEEEEEECCCCEEEGGG
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc-----------------ccccceeEecccccccccccccc
Confidence            4567899999999999999999999999999876321100                 0011233466778898       


Q ss_pred             -----cCeEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCcee--------------------------------------
Q 005277          422 -----GPVYSASFSPLG--DFILSSSADTTIRLWSTKLNANL--------------------------------------  456 (704)
Q Consensus       422 -----~~V~~l~~sp~~--~~l~s~s~Dg~I~lwd~~~~~~~--------------------------------------  456 (704)
                           ++|++++|+|++  .+|++++.||+|++|++.++...                                      
T Consensus        89 ~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (447)
T 3dw8_B           89 SLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASP  168 (447)
T ss_dssp             TEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEE
T ss_pred             cccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccc
Confidence                 889999999998  79999999999999998764331                                      


Q ss_pred             -EE-eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEE-------eccCCCCeeEEEEcCCC-CEEEEEEC
Q 005277          457 -VC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRI-------MAGHLSDVDCVRWHINC-NYIATGSS  525 (704)
Q Consensus       457 -~~-~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-~~~~~~-------~~~~~~~V~~v~~~p~~-~~l~tgs~  525 (704)
                       .. ..+|...|++++|+|++++|++| .|+.|++||+++ ...+..       +.+|...|.+++|+|++ ++|++|+.
T Consensus       169 ~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  247 (447)
T 3dw8_B          169 RRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS  247 (447)
T ss_dssp             EEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred             eEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC
Confidence             12 36799999999999999999999 799999999984 334442       55899999999999998 99999999


Q ss_pred             CCcEEEEeCCCCcE----EEEeecCCC------------CEEEEEEecCCCEEEEEeCCCeEEEEeCCC-CeeeeeecCC
Q 005277          526 DKTVRLWDVSSGEC----VRIFIGHRS------------MILSLAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTPLMGH  588 (704)
Q Consensus       526 dg~I~iwd~~~~~~----~~~~~~h~~------------~i~~l~~spdg~~l~sg~~dg~I~iwdl~~-~~~~~~~~~h  588 (704)
                      ||.|++||+++++.    +..+.+|..            .|.+++|+|+|++|++++. |.|++||+++ ++++..+.+|
T Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~  326 (447)
T 3dw8_B          248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH  326 (447)
T ss_dssp             TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred             CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence            99999999999887    788888876            8999999999999999999 9999999997 8888888888


Q ss_pred             Cceee---------------eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277          589 TSCVW---------------TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVT  653 (704)
Q Consensus       589 ~~~V~---------------sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~  653 (704)
                      ...+.               .++|                                  +|++.+|++|+.||.|++||+.
T Consensus       327 ~~~~~~l~~~~~~~~i~~~~~~~~----------------------------------s~~~~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          327 EYLRSKLCSLYENDCIFDKFECCW----------------------------------NGSDSVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             GGGTTTHHHHHHTSGGGCCCCEEE----------------------------------CTTSSEEEEECSTTEEEEEETT
T ss_pred             ccccccccccccccccccceEEEE----------------------------------CCCCCEEEEeccCCEEEEEEcC
Confidence            64322               2556                                  9999999999999999999999


Q ss_pred             CCccccccccccCcc-----------------ccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          654 TSTKVLKTEEKSGTN-----------------RLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       654 ~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      ++.............                 ..............|..++|+|++.+||+|+.++
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          373 TKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             TCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred             CCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence            876542111100000                 0000011123467899999999999999998875

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.2e-36  Score=323.88  Aligned_cols=287  Identities=16%  Similarity=0.276  Sum_probs=243.2

Q ss_pred             EeeCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277          347 FINTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~d----g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (704)
                      ..+|.+.|+|++|+|+    ...+++++.++.|+||++........                       ........|..
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~-----------------------~~~~~~~~~~~   70 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL-----------------------LQSYVDADADE   70 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE-----------------------EEEEECSCTTC
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe-----------------------eeeccccCCCC
Confidence            3478999999999984    55667777788999999875221110                       00011223778


Q ss_pred             CeEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCce
Q 005277          423 PVYSASFSPL----GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQP  497 (704)
Q Consensus       423 ~V~~l~~sp~----~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~  497 (704)
                      .|++++|+|+    +.+|++|+.||+|++||+.+++.+..+.+|..+|.+++|+| ++.+|++|+.||.|++||+++++.
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  150 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL  150 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE
Confidence            9999999999    66999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             eEEe---ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee----------------------------cC
Q 005277          498 LRIM---AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI----------------------------GH  546 (704)
Q Consensus       498 ~~~~---~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~----------------------------~h  546 (704)
                      +..+   .+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.                            +|
T Consensus       151 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (366)
T 3k26_A          151 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH  230 (366)
T ss_dssp             EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred             EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence            8888   6899999999999999999999999999999999876543333                            39


Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee--------------eeeecCCCceeeeeeeeeeehcccccccccc
Q 005277          547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC--------------VTPLMGHTSCVWTLAYRFLLLVTNAYLKISD  612 (704)
Q Consensus       547 ~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~--------------~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~  612 (704)
                      ...|.+++|+  +++|++++.||.|++||+.++..              +..+.+|...|+++.|               
T Consensus       231 ~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------  293 (366)
T 3k26_A          231 RNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF---------------  293 (366)
T ss_dssp             SSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCC---------------
T ss_pred             cceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEE---------------
Confidence            9999999998  78999999999999999988744              6777888888999988               


Q ss_pred             ccccceeeeeeeEEeecccCCC--CCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCC--CcCeEEEEE
Q 005277          613 KVSTGFLFYSLTIIYFGCASCE--GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK--STPVYSLQF  688 (704)
Q Consensus       613 ~~~~~~~~~~~~~~~~~~~s~~--g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~V~~l~f  688 (704)
                                         +|+  +++|++|+.||.|++||+.++....           ..+..+..|  ..+|.+++|
T Consensus       294 -------------------s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~  343 (366)
T 3k26_A          294 -------------------SMDFWQKMLALGNQVGKLYVWDLEVEDPHK-----------AKCTTLTHHKCGAAIRQTSF  343 (366)
T ss_dssp             -------------------EECTTSSEEEEECTTSCEEEEECCSSSGGG-----------CEEEEECCTTCCSCEEEEEE
T ss_pred             -------------------cCCCCCcEEEEEecCCcEEEEECCCCCCcc-----------ccceEEcccccCCceEEEEe
Confidence                               777  9999999999999999998875421           123345555  789999999


Q ss_pred             ccCCcEEEEeecCCC
Q 005277          689 SRRNLLFAAGALSKT  703 (704)
Q Consensus       689 s~~g~~La~gs~dgt  703 (704)
                      +|++.+|++|+.||+
T Consensus       344 s~~~~~l~s~~~dg~  358 (366)
T 3k26_A          344 SRDSSILIAVCDDAS  358 (366)
T ss_dssp             CTTSSEEEEEETTSE
T ss_pred             CCCCCeEEEEeCCCE
Confidence            999999999999974

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.6e-36  Score=324.50  Aligned_cols=252  Identities=19%  Similarity=0.245  Sum_probs=215.5

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      ...+|..+|++++|+|++.+| +|+.||.|+|||+.+.....                        .......+|.+.|+
T Consensus        89 ~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~------------------------~~~~~~~~h~~~V~  143 (357)
T 4g56_B           89 AGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLL------------------------VNKFAKYEHDDIVK  143 (357)
T ss_dssp             EEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------C------------------------CCCEEECCCSSCEE
T ss_pred             ccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeE------------------------EEeeccCCCCCCEE
Confidence            456788999999999998755 56789999999987632111                        11233458999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEec--
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRIMA--  502 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-~l~sgs~dg~i~lwd~~~~~~~~~~~--  502 (704)
                      +++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|++. ++++++.||+|++||++++++...+.  
T Consensus       144 ~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~  223 (357)
T 4g56_B          144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC  223 (357)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence            999999999999999999999999999999999999999999999999874 78999999999999999988776544  


Q ss_pred             cCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEeCCCCe
Q 005277          503 GHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       503 ~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      .+...+.+++|+|+ +.+|++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++
T Consensus       224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~  303 (357)
T 4g56_B          224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE  303 (357)
T ss_dssp             TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred             cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence            56678999999997 5789999999999999999999999999999999999999987 579999999999999999998


Q ss_pred             eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC-CCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC-EGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      ++..+ +|.+.|++++|                                  +| ++.+|++||.||+|++|++.+...
T Consensus       304 ~~~~~-~H~~~V~~vaf----------------------------------sP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          304 VFRDL-SHRDFVTGVAW----------------------------------SPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             EEEEC-CCSSCEEEEEE----------------------------------CSSSTTEEEEEETTSCEEEEECC----
T ss_pred             EeEEC-CCCCCEEEEEE----------------------------------eCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            87654 79999999999                                  98 799999999999999999977543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.6e-36  Score=327.25  Aligned_cols=272  Identities=24%  Similarity=0.418  Sum_probs=238.2

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ...+++|+.... .+..++..|...|.+++|+|+|++||+|+.|+.|+||++.....                     ..
T Consensus        87 D~~v~iWd~~~~-~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~---------------------~~  144 (380)
T 3iz6_a           87 DGRLIVWNALTS-QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD---------------------RD  144 (380)
T ss_dssp             TSEEEEEETTTT-EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSS---------------------CC
T ss_pred             CCeEEEEECCCC-ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc---------------------cc
Confidence            457888876543 44567788999999999999999999999999999999875211                     01


Q ss_pred             CCccceeeccCCccCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEe-----ecCCcCeeEEEEcC-CCCEEEEE
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY-----KGHNYPVWDVQFNP-QGHYFASS  481 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~-----~~h~~~V~~v~~sp-~~~~l~sg  481 (704)
                      ........+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..+     .+|...|.+++|++ ++.+|++|
T Consensus       145 ~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg  224 (380)
T 3iz6_a          145 GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG  224 (380)
T ss_dssp             CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE
T ss_pred             CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEE
Confidence            1123445678999999999999975 46999999999999999999988877     67999999999987 88999999


Q ss_pred             eCCCeEEEEECC-CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC-------CEEEE
Q 005277          482 SHDRTARIWSMD-RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-------MILSL  553 (704)
Q Consensus       482 s~dg~i~lwd~~-~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-------~i~~l  553 (704)
                      +.||+|++||++ ....+..+.+|...|.+++|+|++++|++|+.||+|++||+++++++..+..+..       .|+++
T Consensus       225 s~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  304 (380)
T 3iz6_a          225 SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV  304 (380)
T ss_dssp             ETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE
T ss_pred             ECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEE
Confidence            999999999998 4578889999999999999999999999999999999999999999988765432       48999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCCeeeeee----cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeec
Q 005277          554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTPL----MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFG  629 (704)
Q Consensus       554 ~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~----~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (704)
                      +|+|+|++|++|+.||.|++||+.+++.+..+    .+|.+.|.+++|                                
T Consensus       305 ~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~--------------------------------  352 (380)
T 3iz6_a          305 AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL--------------------------------  352 (380)
T ss_dssp             EECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE--------------------------------
T ss_pred             EECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE--------------------------------
Confidence            99999999999999999999999999887776    689999999999                                


Q ss_pred             ccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          630 CASCEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       630 ~~s~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                        +|+|.+|++|+.||+|+||++....
T Consensus       353 --s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          353 --SSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             --CSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             --CCCCCEEEEeeCCCCEEEEecCCCc
Confidence              9999999999999999999997653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.5e-36  Score=319.39  Aligned_cols=270  Identities=21%  Similarity=0.293  Sum_probs=225.5

Q ss_pred             cCeEeecCCCCCCeE-EE-EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277          329 RNRVHLSSAALPSVS-FY-TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~-~~-~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (704)
                      ...+++|........ .. ...+|...|.+++|+|+|++||+|+.|+.|+||++...                       
T Consensus        37 D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~-----------------------   93 (345)
T 3fm0_A           37 DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-----------------------   93 (345)
T ss_dssp             TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-----------------------
T ss_pred             CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC-----------------------
Confidence            356788876544322 22 23578999999999999999999999999999998641                       


Q ss_pred             CCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeecCCcCeeEEEEcCCCCEEEEEeC
Q 005277          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSH  483 (704)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~v~~sp~~~~l~sgs~  483 (704)
                         .......+.+|.++|.+++|+|++++|++|+.|++|++||+..+.   ++..+.+|...|.+++|+|++.+|++|+.
T Consensus        94 ---~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~  170 (345)
T 3fm0_A           94 ---DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY  170 (345)
T ss_dssp             ----EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET
T ss_pred             ---CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC
Confidence               123456788999999999999999999999999999999998764   45667889999999999999999999999


Q ss_pred             CCeEEEEECCCCc--eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC---------------cEEEEeec-
Q 005277          484 DRTARIWSMDRIQ--PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---------------ECVRIFIG-  545 (704)
Q Consensus       484 dg~i~lwd~~~~~--~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~---------------~~~~~~~~-  545 (704)
                      |++|++||.+...  +...+.+|...|.+++|+|++++|++|+.|++|++||....               +++..+.+ 
T Consensus       171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (345)
T 3fm0_A          171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF  250 (345)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS
T ss_pred             CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC
Confidence            9999999998765  45678899999999999999999999999999999996321               33445554 


Q ss_pred             CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee---------eeeecCCCceeeeeeeeeeehcccccccccccccc
Q 005277          546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC---------VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVST  616 (704)
Q Consensus       546 h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~---------~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~  616 (704)
                      |...|.+++|+|++..|++++.|+.|++|+...+..         .....+|...|.+++|                   
T Consensus       251 h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-------------------  311 (345)
T 3fm0_A          251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW-------------------  311 (345)
T ss_dssp             CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEE-------------------
T ss_pred             CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEE-------------------
Confidence            888999999999999999999999999999876421         1233689999999999                   


Q ss_pred             ceeeeeeeEEeecccCCCC-CEEEEEeCCCcEEEEeCCCCccc
Q 005277          617 GFLFYSLTIIYFGCASCEG-SLLASGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       617 ~~~~~~~~~~~~~~~s~~g-~~lasgs~Dg~V~iWd~~~~~~~  658 (704)
                                     +|++ .+||+|+.||+|++|++.+++..
T Consensus       312 ---------------~p~~~~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          312 ---------------NPKEPGLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             ---------------CSSSTTEEEEEETTSCEEEEEECC----
T ss_pred             ---------------eCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence                           9987 59999999999999999887643

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-35  Score=307.70  Aligned_cols=276  Identities=22%  Similarity=0.314  Sum_probs=244.8

Q ss_pred             CeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC
Q 005277          341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (704)
Q Consensus       341 ~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  420 (704)
                      .....++.+|.+.|+|++| +++++|++|+.||.|++||+..                            ......+..|
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~----------------------------~~~~~~~~~~   58 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD----------------------------QWLGTVVYTG   58 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS----------------------------SEEEEEEEEC
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC----------------------------CEEEEEeecC
Confidence            3455678899999999999 9999999999999999999865                            2344556678


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~---~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~  497 (704)
                      .+.|.+++|+|++++|++++.||.|++|++...   +.+..+.+|..+|.++.|  ++.++++++.||.|++||  ....
T Consensus        59 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~  134 (313)
T 3odt_A           59 QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSL  134 (313)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEE
T ss_pred             CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcE
Confidence            999999999999999999999999999998754   557778899999999999  578999999999999999  6678


Q ss_pred             eEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEeec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277          498 LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~i~~l~~spdg~~l~sg~~dg~I~iwd  575 (704)
                      ...+..|...+.++.|+| +++++++++.||.|++||  .++.+..+.. |...|.+++|+|++. +++++.||.|++||
T Consensus       135 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d  211 (313)
T 3odt_A          135 VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVD  211 (313)
T ss_dssp             EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEE
T ss_pred             EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEE
Confidence            888889999999999998 899999999999999999  5667777777 899999999999998 99999999999999


Q ss_pred             CCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          576 LASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       576 l~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                      +++++.+..+.+|...|.++.|                                  +|++ .|++|+.||.|++||+.++
T Consensus       212 ~~~~~~~~~~~~~~~~i~~~~~----------------------------------~~~~-~l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          212 MHTGDVLRTYEGHESFVYCIKL----------------------------------LPNG-DIVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEE----------------------------------CTTS-CEEEEETTSEEEEECTTTC
T ss_pred             CCchhhhhhhhcCCceEEEEEE----------------------------------ecCC-CEEEEecCCEEEEEECCCC
Confidence            9999999999999999999999                                  9998 6899999999999999887


Q ss_pred             ccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          656 TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       656 ~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ..               +..+..+..+|.+++|+|++.+ ++|+.||+
T Consensus       257 ~~---------------~~~~~~~~~~i~~~~~~~~~~~-~~~~~dg~  288 (313)
T 3odt_A          257 SL---------------KQVITLPAISIWSVDCMSNGDI-IVGSSDNL  288 (313)
T ss_dssp             CE---------------EEEEECSSSCEEEEEECTTSCE-EEEETTSC
T ss_pred             ce---------------eEEEeccCceEEEEEEccCCCE-EEEeCCCc
Confidence            53               4455677889999999999995 45777764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-37  Score=334.04  Aligned_cols=245  Identities=13%  Similarity=0.184  Sum_probs=209.9

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      +..+.+.|+|++|+|++++||+|+.||.|+||++....                          ......+.+|.++|.+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--------------------------~~~~~~~~~h~~~v~~   60 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG--------------------------WKHARTFSDHDKIVTC   60 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE--------------------------EEECCCBCCCSSCEEE
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc--------------------------eEEEEEEecCCceEEE
Confidence            34467789999999999999999999999999987521                          1344567789999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeEE
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ---PLRI  500 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~---~~~~  500 (704)
                      ++|+|++++|++++.||+|++||+.++.   ....+.+|...|++++|+|++++|++|+.|+.|++||+++.+   ....
T Consensus        61 ~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  140 (377)
T 3dwl_C           61 VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH  140 (377)
T ss_dssp             EEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence            9999999999999999999999999877   677788899999999999999999999999999999999876   3677


Q ss_pred             ecc-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC------------------CCcEEEEeecCCCCEEEEEEecCCCE
Q 005277          501 MAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVS------------------SGECVRIFIGHRSMILSLAMSPDGRY  561 (704)
Q Consensus       501 ~~~-~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~------------------~~~~~~~~~~h~~~i~~l~~spdg~~  561 (704)
                      +.+ |...|.+++|+|++++|++|+.|+.|++||+.                  .++++..+ +|...|.+++|+|+|++
T Consensus       141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~  219 (377)
T 3dwl_C          141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA  219 (377)
T ss_dssp             ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC
T ss_pred             eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE
Confidence            777 99999999999999999999999999999985                  35567777 89999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCee----eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277          562 MASGDEDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL  637 (704)
Q Consensus       562 l~sg~~dg~I~iwdl~~~~~----~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  637 (704)
                      |++|+.||.|++||+.+++.    +..+.+|...|.++.|                                  +|++.+
T Consensus       220 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------s~~~~~  265 (377)
T 3dwl_C          220 LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLW----------------------------------ANESAI  265 (377)
T ss_dssp             EEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEE----------------------------------EETTEE
T ss_pred             EEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEE----------------------------------cCCCCE
Confidence            99999999999999999987    8889999999999999                                  999999


Q ss_pred             EEEEeCCCcEEEEeCC
Q 005277          638 LASGSADCTVKLWDVT  653 (704)
Q Consensus       638 lasgs~Dg~V~iWd~~  653 (704)
                      |++|+.|+.+ +|+..
T Consensus       266 l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          266 VAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEEESSSSEE-EECCC
T ss_pred             EEEEcCCcEE-EEEeC
Confidence            9999876655 66665

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-36  Score=316.47  Aligned_cols=270  Identities=21%  Similarity=0.380  Sum_probs=215.3

Q ss_pred             cCeEeecCCCCCC-eEEEEE-ee-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277          329 RNRVHLSSAALPS-VSFYTF-IN-THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (704)
Q Consensus       329 ~~~~~l~~~~~p~-~~~~~~-~~-~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (704)
                      ...+++|...... ....++ .+ |...|.+++|+|++++||+|+.|+.|+||++......                   
T Consensus        33 D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~-------------------   93 (330)
T 2hes_X           33 DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR-------------------   93 (330)
T ss_dssp             SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------------------------
T ss_pred             CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc-------------------
Confidence            3467777665433 223333 33 8899999999999999999999999999998541100                   


Q ss_pred             CCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeecCCcCeeEEEEcCCCCEEEEE
Q 005277          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHYFASS  481 (704)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~v~~sp~~~~l~sg  481 (704)
                        .........+.+|.+.|.+++|+|++++|++|+.|++|++||+...    +++..+.+|...|.+++|+|++.+|++|
T Consensus        94 --~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~  171 (330)
T 2hes_X           94 --TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS  171 (330)
T ss_dssp             ---CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             --cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEE
Confidence              0012345667899999999999999999999999999999999532    4567788999999999999999999999


Q ss_pred             eCCCeEEEEECCCC--ceeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCC--------cEEEEeec-CCC
Q 005277          482 SHDRTARIWSMDRI--QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG--------ECVRIFIG-HRS  548 (704)
Q Consensus       482 s~dg~i~lwd~~~~--~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~--------~~~~~~~~-h~~  548 (704)
                      +.|++|++||..+.  +++..+.+|...|.+++|+|+  +.+|++|+.|++|++||++++        .+...+.+ |..
T Consensus       172 s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~  251 (330)
T 2hes_X          172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR  251 (330)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred             cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence            99999999998766  577889999999999999998  779999999999999999764        34555555 899


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe--eeee-ecCCCc-eeeeeeeeeeehccccccccccccccceeeeeee
Q 005277          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGR--CVTP-LMGHTS-CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT  624 (704)
Q Consensus       549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~--~~~~-~~~h~~-~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (704)
                      .|.+++|++++ +|++++.||.|++||..++.  .+.. ..+|.. .|.+++|                           
T Consensus       252 ~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~---------------------------  303 (330)
T 2hes_X          252 QVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKW---------------------------  303 (330)
T ss_dssp             CEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEE---------------------------
T ss_pred             ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEE---------------------------
Confidence            99999999765 89999999999999998874  3333 367887 8999999                           


Q ss_pred             EEeecccCC--CCCEEEEEeCCCcEEEEeCCC
Q 005277          625 IIYFGCASC--EGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       625 ~~~~~~~s~--~g~~lasgs~Dg~V~iWd~~~  654 (704)
                             +|  ++++|++|+.||+|+||++..
T Consensus       304 -------~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          304 -------LELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             -------C-----CCEEEEETTSEEEEEEC--
T ss_pred             -------ecCCCceEEEEecCCCcEEEEEecc
Confidence                   77  689999999999999999865

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.4e-35  Score=311.92  Aligned_cols=261  Identities=23%  Similarity=0.411  Sum_probs=229.1

Q ss_pred             CeEeecCCCC----CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277          330 NRVHLSSAAL----PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (704)
Q Consensus       330 ~~~~l~~~~~----p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (704)
                      ..+++|....    ...+..++.+|...|.+++|+|++++|++|+.||+|+|||+.+                       
T Consensus        40 ~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~-----------------------   96 (319)
T 3frx_A           40 KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-----------------------   96 (319)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------------------
T ss_pred             ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC-----------------------
Confidence            4566665421    1234567889999999999999999999999999999999875                       


Q ss_pred             CCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC------CCEEE
Q 005277          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ------GHYFA  479 (704)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~------~~~l~  479 (704)
                           ......+.+|.+.|.+++|+|++.+|++|+.|++|++||+. +.++..+.+|...|.++.|+|.      +..++
T Consensus        97 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~  170 (319)
T 3frx_A           97 -----GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTII  170 (319)
T ss_dssp             -----TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEE
T ss_pred             -----CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEE
Confidence                 34556778999999999999999999999999999999997 6678888999999999999985      45899


Q ss_pred             EEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC
Q 005277          480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG  559 (704)
Q Consensus       480 sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg  559 (704)
                      +++.|++|++||+++.+....+.+|...|.+++|+|++++|++|+.||+|++||+.+++++..+.. ...|.+++|+|+|
T Consensus       171 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~  249 (319)
T 3frx_A          171 SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNR  249 (319)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSS
T ss_pred             EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999988875 4689999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCeeeeeecC--------CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeeccc
Q 005277          560 RYMASGDEDGTIMMWDLASGRCVTPLMG--------HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA  631 (704)
Q Consensus       560 ~~l~sg~~dg~I~iwdl~~~~~~~~~~~--------h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  631 (704)
                      .+|++++.+ .+++|++..+..+..+..        |...+.+++|                                  
T Consensus       250 ~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------  294 (319)
T 3frx_A          250 YWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW----------------------------------  294 (319)
T ss_dssp             SEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEE----------------------------------
T ss_pred             CEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEE----------------------------------
Confidence            999988765 599999998877666543        3556788888                                  


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          632 SCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       632 s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                      +|+|++|++|+.||.|+|||+.++
T Consensus       295 spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          295 SADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CCCCCEEEEeecCceEEEEEEeec
Confidence            999999999999999999998653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-36  Score=324.49  Aligned_cols=289  Identities=17%  Similarity=0.248  Sum_probs=246.6

Q ss_pred             EEEeeCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEc----ccCCc------cccccccCCCCCCCCcccccCCCCCccc
Q 005277          345 YTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDM----AKLGQ------QAVSSGLQGENDTTPREDIIGPNGRKRS  413 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg~-~lasg~~dg~I~iwdl----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (704)
                      +..+.|.+.|+|++|+|+++ +||+|+.||.|++|++    .....      ......                  ....
T Consensus        39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~  100 (425)
T 1r5m_A           39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH------------------PFAL  100 (425)
T ss_dssp             CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC------------------CCCC
T ss_pred             eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc------------------cccc
Confidence            34567779999999999999 9999999999999999    54221      000000                  0000


Q ss_pred             eeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005277          414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (704)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~  493 (704)
                      .....+|.+.|++++|+|++++|++|+.||.|++|| .++..+..+.+|..+|.+++|+|++++|++++.||.|++||+.
T Consensus       101 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          101 SASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI  179 (425)
T ss_dssp             C------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             cccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence            012234788999999999999999999999999999 5688888999999999999999999999999999999999999


Q ss_pred             CCceeEEeccCCCC---------------eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC
Q 005277          494 RIQPLRIMAGHLSD---------------VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD  558 (704)
Q Consensus       494 ~~~~~~~~~~~~~~---------------V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd  558 (704)
                      +++.+..+..+...               +.+++|+|++ .+++++.+|.|++||+++++.+..+.+|...|.+++|+|+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~  258 (425)
T 1r5m_A          180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT  258 (425)
T ss_dssp             TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT
T ss_pred             CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC
Confidence            99999988887776               9999999975 6888999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEE
Q 005277          559 GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL  638 (704)
Q Consensus       559 g~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  638 (704)
                      +++|++++.||.|++||+.+++.+..+.+|...|.++.|                                  +|++ ++
T Consensus       259 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~----------------------------------~~~~-~l  303 (425)
T 1r5m_A          259 NKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW----------------------------------VGDD-KV  303 (425)
T ss_dssp             TTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEE----------------------------------ETTT-EE
T ss_pred             CCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEE----------------------------------CCCC-EE
Confidence            999999999999999999999999999999999999999                                  8988 99


Q ss_pred             EEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          639 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       639 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ++++.||.|++||+.++..               +..+..+..+|.+++|+|++.+|++|+.||+
T Consensus       304 ~~~~~d~~i~i~d~~~~~~---------------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  353 (425)
T 1r5m_A          304 ISCSMDGSVRLWSLKQNTL---------------LALSIVDGVPIFAGRISQDGQKYAVAFMDGQ  353 (425)
T ss_dssp             EEEETTSEEEEEETTTTEE---------------EEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEeCCCcEEEEECCCCcE---------------eEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence            9999999999999987643               4455677889999999999999999999874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=9.8e-36  Score=322.66  Aligned_cols=246  Identities=29%  Similarity=0.583  Sum_probs=219.1

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      ..|++++|+|+|++||+|+.||.|+|||+.+                            ......+.+|...|++++|+|
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~~~~~p  175 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIEN----------------------------RKIVMILQGHEQDIYSLDYFP  175 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------TEEEEEECCCSSCEEEEEECT
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCC----------------------------CcEEEEEccCCCCEEEEEEcC
Confidence            3599999999999999999999999999875                            234566789999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEe-------cc
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIM-------AG  503 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~-------~~  503 (704)
                      ++++|++|+.|++|++||+.++++...+. +...+.+++|+| ++.+|++|+.||+|++||++++..+..+       .+
T Consensus       176 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~  254 (393)
T 1erj_A          176 SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG  254 (393)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CC
T ss_pred             CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCC
Confidence            99999999999999999999998887776 566899999999 8999999999999999999998877766       57


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC------------CcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------------GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~------------~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I  571 (704)
                      |...|.+++|+|++++|++|+.||+|++||+++            +.+...+.+|...|.+++|+|++.+|++|+.||.|
T Consensus       255 h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v  334 (393)
T 1erj_A          255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV  334 (393)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEE
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeE
Confidence            899999999999999999999999999999975            34566788999999999999999999999999999


Q ss_pred             EEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEe
Q 005277          572 MMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD  651 (704)
Q Consensus       572 ~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd  651 (704)
                      ++||+.+++++..+.+|...|.++.|...                            .+++|++++|++|+.||+|+||+
T Consensus       335 ~iwd~~~~~~~~~l~~h~~~v~~v~~~~~----------------------------~~~~p~~~~l~sgs~Dg~i~iW~  386 (393)
T 1erj_A          335 LFWDKKSGNPLLMLQGHRNSVISVAVANG----------------------------SSLGPEYNVFATGSGDCKARIWK  386 (393)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSS----------------------------CTTCTTCEEEEEEETTSEEEEEE
T ss_pred             EEEECCCCeEEEEECCCCCCEEEEEecCC----------------------------cCcCCCCCEEEEECCCCcEEECc
Confidence            99999999999999999999999988210                            01156889999999999999999


Q ss_pred             CCC
Q 005277          652 VTT  654 (704)
Q Consensus       652 ~~~  654 (704)
                      +..
T Consensus       387 ~~~  389 (393)
T 1erj_A          387 YKK  389 (393)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-36  Score=330.21  Aligned_cols=329  Identities=14%  Similarity=0.193  Sum_probs=246.3

Q ss_pred             EEEEE-eeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC
Q 005277          343 SFYTF-INTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (704)
Q Consensus       343 ~~~~~-~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  420 (704)
                      ...++ .+|.+.|+|++|+| ++++||+|+.||.|+|||+.......                      ....... .+|
T Consensus        54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~----------------------~~~~~~~-~~h  110 (437)
T 3gre_A           54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE----------------------VYSSSLT-YDC  110 (437)
T ss_dssp             EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC----------------------CCSCSEE-EEC
T ss_pred             EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc----------------------ccceeee-ccC
Confidence            34455 66789999999999 99999999999999999986511000                      0011111 258


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCC---CCceeEEeec------------CCcCeeEEE--EcCCCCEEEEEeC
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTK---LNANLVCYKG------------HNYPVWDVQ--FNPQGHYFASSSH  483 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~---~~~~~~~~~~------------h~~~V~~v~--~sp~~~~l~sgs~  483 (704)
                      .++|.+++|+|++++|++|+.||+|++||+.   +++......+            +...+.++.  +++++.++++|+.
T Consensus       111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (437)
T 3gre_A          111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN  190 (437)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC
Confidence            9999999999999999999999999999995   5555444332            445566666  5678999999999


Q ss_pred             CCeEEEEECCCCceeEEecc--CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEec---
Q 005277          484 DRTARIWSMDRIQPLRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSP---  557 (704)
Q Consensus       484 dg~i~lwd~~~~~~~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~sp---  557 (704)
                      ||.|++||+++++++..+.+  |...|.+++|+|++++|++|+.||.|++||+++++++..+. .|...|.+++|+|   
T Consensus       191 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s  270 (437)
T 3gre_A          191 LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYG  270 (437)
T ss_dssp             TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTC
T ss_pred             CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccC
Confidence            99999999999999999988  89999999999999999999999999999999999999886 7888999996664   


Q ss_pred             -CCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC
Q 005277          558 -DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS  636 (704)
Q Consensus       558 -dg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  636 (704)
                       ++.+|++|+.||.|++||+++++.+..+.+|...+..+.|.+.......      ....+  ......+...+++ ++.
T Consensus       271 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~--~~~~~~v~~l~~~-~~~  341 (437)
T 3gre_A          271 KNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEE------LNFCG--IRSLNALSTISVS-NDK  341 (437)
T ss_dssp             TTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGG------CCCCC--CCSGGGGCCEEEE-TTE
T ss_pred             CCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccc------ceecc--cccCCceEEEEEC-Cce
Confidence             6889999999999999999999999999999888877766322100000      00000  0000111222336 678


Q ss_pred             EEEEEeCCCcEEEEeCCCCccccccccccC----------------------ccccccccccCCCCcCeEEEEEccC--C
Q 005277          637 LLASGSADCTVKLWDVTTSTKVLKTEEKSG----------------------TNRLRSLKTLPTKSTPVYSLQFSRR--N  692 (704)
Q Consensus       637 ~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~----------------------~~~~~~l~~~~~~~~~V~~l~fs~~--g  692 (704)
                      +|++|+.||.|++||+.++...........                      ......+.....|...|++++|+++  +
T Consensus       342 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~  421 (437)
T 3gre_A          342 ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDET  421 (437)
T ss_dssp             EEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSS
T ss_pred             EEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCc
Confidence            999999999999999998876544432100                      0001112234458999999999998  8


Q ss_pred             cEEEEeecCCC
Q 005277          693 LLFAAGALSKT  703 (704)
Q Consensus       693 ~~La~gs~dgt  703 (704)
                      .+|++|+.||+
T Consensus       422 ~~l~s~~~dG~  432 (437)
T 3gre_A          422 PLLVACDNSGL  432 (437)
T ss_dssp             EEEEEEETTSC
T ss_pred             eEEEEEcCCce
Confidence            89999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.7e-35  Score=350.60  Aligned_cols=281  Identities=22%  Similarity=0.361  Sum_probs=255.7

Q ss_pred             EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      .++.+|.+.|+|++|+|++++||+|+.||.|+|||+.+                            ......+.+|.++|
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~----------------------------~~~~~~~~~~~~~v   58 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET----------------------------QVEVRSIQVTETPV   58 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----------------------------TEEEEEEECCSSCE
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC----------------------------CceEEEEecCCCcE
Confidence            45788999999999999999999999999999999865                            33556677899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEecc
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAG  503 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~  503 (704)
                      .+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|++++|+|++.++++|+.||+|++||++++ .....+.+
T Consensus        59 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  138 (814)
T 3mkq_A           59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG  138 (814)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999886 66778889


Q ss_pred             CCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-CCEEEEEEec--CCCEEEEEeCCCeEEEEeCCCC
Q 005277          504 HLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSP--DGRYMASGDEDGTIMMWDLASG  579 (704)
Q Consensus       504 ~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~i~~l~~sp--dg~~l~sg~~dg~I~iwdl~~~  579 (704)
                      |...|.+++|+| +++.|++++.||.|++||+.++.....+..+. ..+.+++|+|  ++.+|++|+.||.|++||+.++
T Consensus       139 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  218 (814)
T 3mkq_A          139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (814)
T ss_dssp             CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred             CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            999999999999 88999999999999999999888777776655 8899999999  9999999999999999999999


Q ss_pred             eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 005277          580 RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL  659 (704)
Q Consensus       580 ~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~  659 (704)
                      +.+..+.+|...|.++.|                                  +|++.+|++|+.||.|++||+.++..  
T Consensus       219 ~~~~~~~~~~~~v~~~~~----------------------------------~~~~~~l~~~~~dg~v~vwd~~~~~~--  262 (814)
T 3mkq_A          219 SCVATLEGHMSNVSFAVF----------------------------------HPTLPIIISGSEDGTLKIWNSSTYKV--  262 (814)
T ss_dssp             EEEEEEECCSSCEEEEEE----------------------------------CSSSSEEEEEETTSCEEEEETTTCSE--
T ss_pred             cEEEEEcCCCCCEEEEEE----------------------------------cCCCCEEEEEeCCCeEEEEECCCCcE--
Confidence            999999999999999999                                  99999999999999999999987643  


Q ss_pred             ccccccCccccccccccCCCCcCeEEEEEccCCc--EEEEeecCC
Q 005277          660 KTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL--LFAAGALSK  702 (704)
Q Consensus       660 ~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~--~La~gs~dg  702 (704)
                                   +..+..+..+|.+++|+|+|.  ++++|+.++
T Consensus       263 -------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  294 (814)
T 3mkq_A          263 -------------EKTLNVGLERSWCIATHPTGRKNYIASGFDNG  294 (814)
T ss_dssp             -------------EEEECCSSSSEEEEEECTTCGGGEEEEEETTE
T ss_pred             -------------EEEeecCCCcEEEEEEccCCCceEEEEEeCCC
Confidence                         445566778899999999986  577776543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.2e-35  Score=323.55  Aligned_cols=280  Identities=20%  Similarity=0.289  Sum_probs=235.6

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      ..+.+..|++++++||+|+.||.|++||+..                            ......+.+|.+.|++++|+|
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~~~~~~  149 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF----------------------------NLQREIDQAHVSEITKLKFFP  149 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTS----------------------------CEEEEETTSSSSCEEEEEECT
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCC----------------------------cceeeecccccCccEEEEECC
Confidence            4456668899999999999999999999865                            234556678999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc---CC---
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---HL---  505 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~---~~---  505 (704)
                      ++++|++|+.||+|++||+.+++.+..+.+|..+|++++|+|++.+|++|+.||+|++||+++++.+..+..   +.   
T Consensus       150 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v  229 (420)
T 3vl1_A          150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV  229 (420)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999998888874   33   


Q ss_pred             ------------------CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEecCCC-EEEEE
Q 005277          506 ------------------SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGR-YMASG  565 (704)
Q Consensus       506 ------------------~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg~-~l~sg  565 (704)
                                        ..+.+++|+|++++|++|+.||.|++||+++++.+..+. +|...|.+++|+|++. +|++|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g  309 (420)
T 3vl1_A          230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG  309 (420)
T ss_dssp             EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred             cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence                              445555568899999999999999999999998777664 5788999999999999 99999


Q ss_pred             eCCCeEEEEeCCCCee-eeeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277          566 DEDGTIMMWDLASGRC-VTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA  643 (704)
Q Consensus       566 ~~dg~I~iwdl~~~~~-~~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~  643 (704)
                      +.||.|++||+++++. +..+.+ |...|.++.+                                   +++.+|++|+.
T Consensus       310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-----------------------------------~~~~~l~s~~~  354 (420)
T 3vl1_A          310 YENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-----------------------------------AAGALFVSSGF  354 (420)
T ss_dssp             ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-----------------------------------ETTEEEEEETT
T ss_pred             eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-----------------------------------CCCCEEEEecC
Confidence            9999999999998754 667766 6677877754                                   46789999999


Q ss_pred             CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCc----EEEEeec
Q 005277          644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL----LFAAGAL  700 (704)
Q Consensus       644 Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~----~La~gs~  700 (704)
                      ||.|++|++...........      ......+..+...|.+++|+|++.    ++++|+.
T Consensus       355 d~~v~iw~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~  409 (420)
T 3vl1_A          355 DTSIKLDIISDPESERPAIE------FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN  409 (420)
T ss_dssp             TEEEEEEEECCTTCCSCEEC------TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETT
T ss_pred             CccEEEEeccCCCCCcccee------ccCccEEccCCcceEEEEEccCCCCcceEEEEcCC
Confidence            99999999987543221111      111233567888999999999999    5665543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-37  Score=341.62  Aligned_cols=295  Identities=10%  Similarity=0.022  Sum_probs=228.5

Q ss_pred             CCCCEEEEEEcCCC---------CEEEE-------------------EeCCCcEEEEEcccCCccccccccCCCCCCCCc
Q 005277          350 THNGLNCASISQDG---------SLVAG-------------------GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPR  401 (704)
Q Consensus       350 ~~~~V~~~~fs~dg---------~~las-------------------g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~  401 (704)
                      +.+.|.|++|+|++         ++||+                   |+.||+|+||++......               
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~---------------  196 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH---------------  196 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC---------------
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC---------------
Confidence            56677777777765         55555                   557889999998652110               


Q ss_pred             ccccCCCCCccceeeccCCccCeEEEEEcCC------CCEEEEEeCCCeEEEEeCCCCce-----------eEEeecCCc
Q 005277          402 EDIIGPNGRKRSYTLYQGHSGPVYSASFSPL------GDFILSSSADTTIRLWSTKLNAN-----------LVCYKGHNY  464 (704)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~------~~~l~s~s~Dg~I~lwd~~~~~~-----------~~~~~~h~~  464 (704)
                               ......+.+|.+.|.+++|+|+      +.+|++++.||+|++||+..+..           ...+.+|..
T Consensus       197 ---------~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~  267 (524)
T 2j04_B          197 ---------CVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS  267 (524)
T ss_dssp             ---------EEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT
T ss_pred             ---------ceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCC
Confidence                     0112335568899999999997      57999999999999999986642           246788999


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEeccCCCCeeEE--EEcCCC-CEEEEEECCCcEEEEeCCCCcEE
Q 005277          465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCV--RWHINC-NYIATGSSDKTVRLWDVSSGECV  540 (704)
Q Consensus       465 ~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~~~~~V~~v--~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~  540 (704)
                      +|++++|++++ .|++|+.||+|++||++++ .+...+.+|...|.+|  .|+|++ .+|++|+.|++|++||+++++++
T Consensus       268 ~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~  346 (524)
T 2j04_B          268 LITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT  346 (524)
T ss_dssp             CEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred             CEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence            99999999864 8999999999999999876 4566788999999999  567887 89999999999999999998887


Q ss_pred             EEeecCCC--CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccce
Q 005277          541 RIFIGHRS--MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGF  618 (704)
Q Consensus       541 ~~~~~h~~--~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~  618 (704)
                      ..+.+|..  .|.+++|+|+++.+++++.|++|++||++++.++..+.+|.+.|++++|                     
T Consensus       347 ~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~---------------------  405 (524)
T 2j04_B          347 KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGV---------------------  405 (524)
T ss_dssp             CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEEC---------------------
T ss_pred             cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEe---------------------
Confidence            77777753  5889999999999999999999999999999988889999999999999                     


Q ss_pred             eeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc--------------cccccc-C----------c----cc
Q 005277          619 LFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL--------------KTEEKS-G----------T----NR  669 (704)
Q Consensus       619 ~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~--------------~~~~~~-~----------~----~~  669 (704)
                                   +|+|.+|++|+.||+|++||+.......              ...... +          .    ..
T Consensus       406 -------------Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~  472 (524)
T 2j04_B          406 -------------SRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVN  472 (524)
T ss_dssp             -------------CSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC----
T ss_pred             -------------CCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccC
Confidence                         9999999999999999999976431110              000000 0          0    01


Q ss_pred             cccccccCCCCcCeEEEEEccCCc---EEEEeecCCC
Q 005277          670 LRSLKTLPTKSTPVYSLQFSRRNL---LFAAGALSKT  703 (704)
Q Consensus       670 ~~~l~~~~~~~~~V~~l~fs~~g~---~La~gs~dgt  703 (704)
                      ...+..+.+|..+|.+|+|+|++.   ++|+|+.+|+
T Consensus       473 g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~  509 (524)
T 2j04_B          473 DVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGL  509 (524)
T ss_dssp             ---------CCCSCCCEEECCSTTTTTEEEEECTTSE
T ss_pred             CcceeeecCCCceEEEEECCCCCCccHHHHhhccCce
Confidence            234567788999999999999964   9999999874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.2e-36  Score=317.65  Aligned_cols=249  Identities=22%  Similarity=0.396  Sum_probs=211.7

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+....                          ......+.+|.++|.
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~--------------------------~~~~~~l~gH~~~V~   61 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG--------------------------QILIADLRGHEGPVW   61 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE--------------------------EEEEEEEECCSSCEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC--------------------------cEEEEEEcCCCccEE
Confidence            356899999999999999999999999999999986411                          123456789999999


Q ss_pred             EEEEcC--CCCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEEEEECCCCce--
Q 005277          426 SASFSP--LGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQP--  497 (704)
Q Consensus       426 ~l~~sp--~~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~lwd~~~~~~--  497 (704)
                      +++|+|  ++++|++|+.|++|++||+.++.  ....+.+|...|++++|+|+  +.+|++|+.|++|++||++....  
T Consensus        62 ~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~  141 (316)
T 3bg1_A           62 QVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE  141 (316)
T ss_dssp             EEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred             EEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence            999986  48899999999999999999763  56678899999999999997  88999999999999999987532  


Q ss_pred             -eEEeccCCCCeeEEEEcCC-----------------CCEEEEEECCCcEEEEeCCCC---cEEEEeecCCCCEEEEEEe
Q 005277          498 -LRIMAGHLSDVDCVRWHIN-----------------CNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMS  556 (704)
Q Consensus       498 -~~~~~~~~~~V~~v~~~p~-----------------~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~i~~l~~s  556 (704)
                       ...+.+|...|.+++|+|+                 +.+|++|+.|++|++||++.+   +++..+.+|...|.+++|+
T Consensus       142 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s  221 (316)
T 3bg1_A          142 VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA  221 (316)
T ss_dssp             ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC
T ss_pred             eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEec
Confidence             3455689999999999997                 478999999999999999765   4677788999999999999


Q ss_pred             cCC----CEEEEEeCCCeEEEEeCCCC---e-eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277          557 PDG----RYMASGDEDGTIMMWDLASG---R-CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF  628 (704)
Q Consensus       557 pdg----~~l~sg~~dg~I~iwdl~~~---~-~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (704)
                      |++    .+|++|+.||.|++||+.+.   . ....+..|...|++++|                               
T Consensus       222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~-------------------------------  270 (316)
T 3bg1_A          222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW-------------------------------  270 (316)
T ss_dssp             CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEE-------------------------------
T ss_pred             CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEE-------------------------------
Confidence            987    89999999999999998763   1 22345678899999999                               


Q ss_pred             cccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          629 GCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       629 ~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                         +|++++|++|+.||+|+||+...
T Consensus       271 ---sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          271 ---SITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             ---CTTTCCEEEEESSSCEEEEEECT
T ss_pred             ---cCCCCEEEEEcCCCeEEEEEECC
Confidence               99999999999999999999754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.8e-36  Score=330.39  Aligned_cols=291  Identities=18%  Similarity=0.215  Sum_probs=224.6

Q ss_pred             EEeeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          346 TFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      +...|...|+|++|+| ++++||+|+.||.|+|||+....                          ......+.+|.++|
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~--------------------------~~~~~~~~gH~~~V  167 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--------------------------KPTFIKGIGAGGSI  167 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS--------------------------CCEEECCCSSSCCC
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC--------------------------ceeEEEccCCCCCE
Confidence            4567889999999999 57899999999999999987521                          22344567899999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeec--CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          425 YSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       425 ~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      ++|+|+| ++.+|++|+.||+|++||++++........  +...+.+++|+|++.+|++|+.||.|++||++. +.+..+
T Consensus       168 ~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~  246 (435)
T 4e54_B          168 TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNL  246 (435)
T ss_dssp             CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCS
T ss_pred             EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEE
Confidence            9999998 678999999999999999986544433333  344678999999999999999999999999975 566778


Q ss_pred             ccCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCcEEEE---eecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277          502 AGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRI---FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~~---~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~  577 (704)
                      .+|...|.+++|+|++. +|++|+.|++|++||+++++....   ..+|...|++++|+|+|++|++|+.||.|+|||+.
T Consensus       247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred             ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence            89999999999999875 788999999999999988764433   35799999999999999999999999999999999


Q ss_pred             CCeeeeeecCCCcee------eeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCcEEEE
Q 005277          578 SGRCVTPLMGHTSCV------WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCTVKLW  650 (704)
Q Consensus       578 ~~~~~~~~~~h~~~V------~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~V~iW  650 (704)
                      ++.....+..|....      ....|..                       .......+.++++..+++++ .++.|++|
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~d~~~~~~~~~~~~~i~iw  383 (435)
T 4e54_B          327 QWDCPLGLIPHPHRHFQHLTPIKAAWHP-----------------------RYNLIVVGRYPDPNFKSCTPYELRTIDVF  383 (435)
T ss_dssp             SSSSEEEECCCCCCCCSSSCCCBCEECS-----------------------SSSCEEEECCCCTTSCCSSTTCCCCEEEE
T ss_pred             CCccceEEecccccccccceeEEEEEcC-----------------------CCCEEEEEEcCCCCeEEEEecCCCEEEEE
Confidence            998888777665321      1122200                       00000011144444433333 44689999


Q ss_pred             eCCCCccccccccccCccccccccccCCCCcCeEEE-EEccCCcEEEEeec
Q 005277          651 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL-QFSRRNLLFAAGAL  700 (704)
Q Consensus       651 d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l-~fs~~g~~La~gs~  700 (704)
                      |..++..+.              .....|...|.++ +|+|+|.+||+|+.
T Consensus       384 d~~~g~~~~--------------~l~~~~~~~v~s~~~fspdg~~lasg~d  420 (435)
T 4e54_B          384 DGNSGKMMC--------------QLYDPESSGISSLNEFNPMGDTLASAMG  420 (435)
T ss_dssp             CSSSCCEEE--------------EECCSSCCCCCCEEEECTTSSCEEEECS
T ss_pred             ECCCCcEEE--------------EEeCCCCCcEEEEEEECCCCCEEEEEcC
Confidence            998876431              1234567788887 69999999999873

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2e-35  Score=323.08  Aligned_cols=298  Identities=26%  Similarity=0.432  Sum_probs=259.1

Q ss_pred             ccccCcCCCCCCCCCCCCCCCCChhHHHHHHHhccCeEeecCCCCCCe-EEEEEeeCCCCEEEEEEcCCCCEEEEEeCCC
Q 005277          295 RLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDS  373 (704)
Q Consensus       295 ~~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~p~~-~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg  373 (704)
                      +..+..+.++|...+++|+..++|+..+.+...+...|++|+...... ..+.+.+|...|+|++|+|+|++||+|+.||
T Consensus        90 ~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg  169 (420)
T 4gga_A           90 PSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA  169 (420)
T ss_dssp             CSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC
Confidence            344667888999999999999999876655667788999999876554 3445567888999999999999999999999


Q ss_pred             cEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 005277          374 SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN  453 (704)
Q Consensus       374 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~  453 (704)
                      .|+|||+.+                            ......+.+|...|.+++|+  +..|++|+.|+.+++||....
T Consensus       170 ~v~iWd~~~----------------------------~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~  219 (420)
T 4gga_A          170 EVQLWDVQQ----------------------------QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA  219 (420)
T ss_dssp             CEEEEETTT----------------------------TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred             eEEEEEcCC----------------------------CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence            999999875                            34566778999999999886  679999999999999998865


Q ss_pred             -ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc----eeEEeccCCCCeeEEEEcCCC-CEEEEE--EC
Q 005277          454 -ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRWHINC-NYIATG--SS  525 (704)
Q Consensus       454 -~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~----~~~~~~~~~~~V~~v~~~p~~-~~l~tg--s~  525 (704)
                       ..+..+.+|...+..+.|+|++.++++++.|+.+++|+...++    .+.....|...|.+++|+|.+ .+++++  +.
T Consensus       220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~  299 (420)
T 4gga_A          220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS  299 (420)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred             ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence             4467788999999999999999999999999999999998754    456777899999999999965 555554  47


Q ss_pred             CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe--CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehc
Q 005277          526 DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLV  603 (704)
Q Consensus       526 dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~--~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~  603 (704)
                      |++|++||+.+++++..+..| ..+.++.|+|+++.+++++  .||.|+|||+.+++++..+.+|.+.|++++|      
T Consensus       300 D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~------  372 (420)
T 4gga_A          300 DRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM------  372 (420)
T ss_dssp             TCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE------
T ss_pred             CCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE------
Confidence            999999999999999888655 5789999999999988765  7899999999999999999999999999999      


Q ss_pred             cccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                                                  +|+|.+|+||+.||+|+|||+.....
T Consensus       373 ----------------------------spdg~~l~S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          373 ----------------------------SPDGATVASAAADETLRLWRCFELDP  398 (420)
T ss_dssp             ----------------------------CTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred             ----------------------------cCCCCEEEEEecCCeEEEEECCCCCc
Confidence                                        99999999999999999999987543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-34  Score=320.15  Aligned_cols=319  Identities=23%  Similarity=0.376  Sum_probs=262.0

Q ss_pred             cCCCCCCeEEEEEeeCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccc
Q 005277          335 SSAALPSVSFYTFINTHNGL-NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRS  413 (704)
Q Consensus       335 ~~~~~p~~~~~~~~~~~~~V-~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (704)
                      |..........++.+|.+.| .|+.+  ++++|++|+.||.|++||+.+                            ...
T Consensus       105 w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~----------------------------~~~  154 (464)
T 3v7d_B          105 WYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN----------------------------KKF  154 (464)
T ss_dssp             HHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT----------------------------TEE
T ss_pred             hcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC----------------------------CcE
Confidence            43344445556788898884 66666  567999999999999999875                            345


Q ss_pred             eeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEc--CCCCEEEEEeCCCeEEEEE
Q 005277          414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN--PQGHYFASSSHDRTARIWS  491 (704)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~s--p~~~~l~sgs~dg~i~lwd  491 (704)
                      ...+.+|.++|.+++|+|++ +|++|+.||+|++||+.+++.+..+.+|..+|.+++|+  +++.++++|+.||+|++||
T Consensus       155 ~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd  233 (464)
T 3v7d_B          155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  233 (464)
T ss_dssp             EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred             EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence            56678999999999999988 89999999999999999999999999999999999998  5789999999999999999


Q ss_pred             CCCCce-----------------------eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC
Q 005277          492 MDRIQP-----------------------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS  548 (704)
Q Consensus       492 ~~~~~~-----------------------~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~  548 (704)
                      +++...                       +..+.+|...|.++  +++++++++|+.||.|++||+++++++..+.+|..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  311 (464)
T 3v7d_B          234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD  311 (464)
T ss_dssp             CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence            987652                       45677888888887  57789999999999999999999999999999999


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeee---hccccccccccccccceee--eee
Q 005277          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLL---LVTNAYLKISDKVSTGFLF--YSL  623 (704)
Q Consensus       549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~  623 (704)
                      .|.+++|+|++++|++|+.||.|++||+++++++..+.+|...|.++.|....   ...++.+++++........  ...
T Consensus       312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  391 (464)
T 3v7d_B          312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHT  391 (464)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECT
T ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCC
Confidence            99999999999999999999999999999999999999999999999985322   2334556666655433222  122


Q ss_pred             eEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          624 TIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       624 ~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      ......++++++.++++|+ ||.|++||+.+++.+.              ..+..+..+|.+++|+ .+.++++++.+|
T Consensus       392 ~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~--------------~~~~~~~~~v~~v~~~-~~~l~~~~~~~g  454 (464)
T 3v7d_B          392 NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH--------------ANILKDADQIWSVNFK-GKTLVAAVEKDG  454 (464)
T ss_dssp             TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE--------------SCTTTTCSEEEEEEEE-TTEEEEEEEETT
T ss_pred             CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe--------------hhhccCCCcEEEEEec-CCEEEEEEEeCC
Confidence            2334456689999999999 8999999999876431              1244578899999998 455666666665

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-36  Score=327.73  Aligned_cols=277  Identities=20%  Similarity=0.364  Sum_probs=243.1

Q ss_pred             CCEEEEEEcCCCC-EEEEE----------eCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC
Q 005277          352 NGLNCASISQDGS-LVAGG----------FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (704)
Q Consensus       352 ~~V~~~~fs~dg~-~lasg----------~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  420 (704)
                      ..|.|++|+|+++ +||+|          +.||.|+||++......                          .......|
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------------~~~~~~~~   66 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------------KPIASLQV   66 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--------------------------SCSCCCCC
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--------------------------cEEEEEec
Confidence            4688999999987 99999          88999999998752110                          01112358


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CceeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI  495 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~  495 (704)
                      ...|.+++|+|++++|++|+.||.|++|++.+    ...+..+.+|..+|++++|+|+ +.+|++++.||.|++||+.+.
T Consensus        67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  146 (416)
T 2pm9_A           67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC  146 (416)
T ss_dssp             SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred             CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence            89999999999999999999999999999987    4578888999999999999998 899999999999999999887


Q ss_pred             c------eeE---EeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecC------CCCEEEEEEecCC
Q 005277          496 Q------PLR---IMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGH------RSMILSLAMSPDG  559 (704)
Q Consensus       496 ~------~~~---~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h------~~~i~~l~~spdg  559 (704)
                      +      ...   ....|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..|      ...|.+++|+|++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  226 (416)
T 2pm9_A          147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN  226 (416)
T ss_dssp             SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred             ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence            6      322   23578999999999999 799999999999999999999999988876      7899999999997


Q ss_pred             -CEEEEEeCCC---eEEEEeCCCC-eeeeeec-CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277          560 -RYMASGDEDG---TIMMWDLASG-RCVTPLM-GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC  633 (704)
Q Consensus       560 -~~l~sg~~dg---~I~iwdl~~~-~~~~~~~-~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  633 (704)
                       .+|++++.|+   .|++||++++ .++..+. +|...|.++.|                                  +|
T Consensus       227 ~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------s~  272 (416)
T 2pm9_A          227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW----------------------------------CH  272 (416)
T ss_dssp             TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEE----------------------------------CS
T ss_pred             CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEe----------------------------------CC
Confidence             6899999998   9999999986 6777888 89999999999                                  88


Q ss_pred             -CCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCC-cEEEEeecCCC
Q 005277          634 -EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGALSKT  703 (704)
Q Consensus       634 -~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g-~~La~gs~dgt  703 (704)
                       ++.+|++|+.||.|++||+.++..               +..+..|..+|.+++|+|++ .+|++|+.||+
T Consensus       273 ~~~~~l~s~~~dg~v~~wd~~~~~~---------------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~  329 (416)
T 2pm9_A          273 QDEHLLLSSGRDNTVLLWNPESAEQ---------------LSQFPARGNWCFKTKFAPEAPDLFACASFDNK  329 (416)
T ss_dssp             SCSSCEEEEESSSEEEEECSSSCCE---------------EEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred             CCCCeEEEEeCCCCEEEeeCCCCcc---------------ceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence             899999999999999999987643               45667788999999999999 89999999874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.2e-35  Score=311.51  Aligned_cols=260  Identities=25%  Similarity=0.408  Sum_probs=218.4

Q ss_pred             CeEeecCCCCC------CeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccc
Q 005277          330 NRVHLSSAALP------SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED  403 (704)
Q Consensus       330 ~~~~l~~~~~p------~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~  403 (704)
                      ..+++|.....      ..+..++.+|...|++++|+|++.+|++|+.||+|++||+.+                     
T Consensus        49 ~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~---------------------  107 (343)
T 2xzm_R           49 KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT---------------------  107 (343)
T ss_dssp             SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS---------------------
T ss_pred             CEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC---------------------
Confidence            46777765422      234556789999999999999999999999999999999875                     


Q ss_pred             ccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee---cCCcCeeEEEEcCCC-----
Q 005277          404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQG-----  475 (704)
Q Consensus       404 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~v~~sp~~-----  475 (704)
                             ......+.+|.+.|.+++|+|++++|++|+.|++|++||+. +.......   +|...|.+++|+|++     
T Consensus       108 -------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  179 (343)
T 2xzm_R          108 -------GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANK  179 (343)
T ss_dssp             -------SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEECCTTTSCSSCEEEEEECCCCCSCSC
T ss_pred             -------CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeeeecccCCCceeeeeeeccccccccc
Confidence                   23456678999999999999999999999999999999998 33333333   688999999999986     


Q ss_pred             -----CEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEEeecCCCC
Q 005277          476 -----HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSM  549 (704)
Q Consensus       476 -----~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~  549 (704)
                           .+|++++.||+|++||. .......+.+|...|.+++|+|++++|++|+.||.|++||+.+ +.....+ .+...
T Consensus       180 ~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~  257 (343)
T 2xzm_R          180 VQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGST  257 (343)
T ss_dssp             CCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSC
T ss_pred             cCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCc
Confidence                 79999999999999994 4567778889999999999999999999999999999999954 4444444 35567


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeee--eec-----------CCCceeeeeeeeeeehcccccccccccccc
Q 005277          550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT--PLM-----------GHTSCVWTLAYRFLLLVTNAYLKISDKVST  616 (704)
Q Consensus       550 i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~--~~~-----------~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~  616 (704)
                      |.+++|+|++.++++| .|+.|++||+.+++...  .+.           +|...|.+++|                   
T Consensus       258 v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------------------  317 (343)
T 2xzm_R          258 INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW-------------------  317 (343)
T ss_dssp             EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE-------------------
T ss_pred             EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE-------------------
Confidence            9999999999988755 57789999998876543  333           67888999999                   


Q ss_pred             ceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          617 GFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       617 ~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                                     +|+|.+|++|+.||+|++|++.++
T Consensus       318 ---------------sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          318 ---------------NALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             ---------------CSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             ---------------CCCCCeEEEecCCceEEEEEEEcc
Confidence                           999999999999999999998654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4e-36  Score=327.37  Aligned_cols=272  Identities=17%  Similarity=0.260  Sum_probs=233.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (704)
                      +++++|+|++++|++|+.||.|++|++....                            ....+.+| ..+....|+|++
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~----------------------------~~~~~~~~-~~~~~~~~~~~~  109 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRD----------------------------GSKMLKRA-DYTAVDTAKLQM  109 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEE----------------------------TTTTSCSC-CEEEEEEECSSS
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccc----------------------------eeeEEecC-CceEEEEEecCC
Confidence            4578999999999999999999999987521                            11222334 445566789999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEE
Q 005277          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW  513 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~  513 (704)
                      ++|++|+.||.|++||+.++.....+.+|...|++++|+|++.+|++|+.||+|++||+++++.+..+.+|...|.+++|
T Consensus       110 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~  189 (420)
T 3vl1_A          110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI  189 (420)
T ss_dssp             CEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEE
T ss_pred             CEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEE
Confidence            99999999999999999999888888899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCcEEEEeec---CCCCEEEEE---------------------EecCCCEEEEEeCCC
Q 005277          514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLA---------------------MSPDGRYMASGDEDG  569 (704)
Q Consensus       514 ~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~i~~l~---------------------~spdg~~l~sg~~dg  569 (704)
                      +|++++|++|+.||+|++||+++++.+..+..   |...|.+++                     |+|+|++|++|+.||
T Consensus       190 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  269 (420)
T 3vl1_A          190 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG  269 (420)
T ss_dssp             ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred             cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence            99999999999999999999999999998875   344555554                     578999999999999


Q ss_pred             eEEEEeCCCCeeeeeec-CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC-EEEEEeCCCcE
Q 005277          570 TIMMWDLASGRCVTPLM-GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS-LLASGSADCTV  647 (704)
Q Consensus       570 ~I~iwdl~~~~~~~~~~-~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~lasgs~Dg~V  647 (704)
                      .|++||+++++.+..+. +|...|.++.|                                  +|++. +|++|+.||.|
T Consensus       270 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~----------------------------------~~~~~~~l~~g~~dg~i  315 (420)
T 3vl1_A          270 VITVHNVFSKEQTIQLPSKFTCSCNSLTV----------------------------------DGNNANYIYAGYENGML  315 (420)
T ss_dssp             CEEEEETTTCCEEEEECCTTSSCEEEEEE----------------------------------CSSCTTEEEEEETTSEE
T ss_pred             eEEEEECCCCceeEEcccccCCCceeEEE----------------------------------eCCCCCEEEEEeCCCeE
Confidence            99999999998877764 58899999999                                  99998 99999999999


Q ss_pred             EEEeCCCCccccccccccCccccccccccCC-CCcCeEEEEEccCCcEEEEeecCCC
Q 005277          648 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT-KSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       648 ~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ++||+.++...              +..+.. +..+|.++.| +++.+|++|+.||+
T Consensus       316 ~vwd~~~~~~~--------------~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~  357 (420)
T 3vl1_A          316 AQWDLRSPECP--------------VGEFLINEGTPINNVYF-AAGALFVSSGFDTS  357 (420)
T ss_dssp             EEEETTCTTSC--------------SEEEEESTTSCEEEEEE-ETTEEEEEETTTEE
T ss_pred             EEEEcCCCcCc--------------hhhhhccCCCCceEEEe-CCCCEEEEecCCcc
Confidence            99999886431              333333 5678888855 57889999998874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-35  Score=314.05  Aligned_cols=250  Identities=22%  Similarity=0.387  Sum_probs=222.4

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      ++.+|.+.|+|++|+|++++||+|+.||.|+||++...                          .......+.+|.++|+
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--------------------------~~~~~~~~~~h~~~v~   59 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW   59 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT--------------------------EEEEEEEECCCSSCEE
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC--------------------------cceeeeEecCCCCcEE
Confidence            46789999999999999999999999999999998631                          1345567789999999


Q ss_pred             EEEEcCC--CCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEEEEECCCCc--e
Q 005277          426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQ--P  497 (704)
Q Consensus       426 ~l~~sp~--~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~lwd~~~~~--~  497 (704)
                      +++|+|+  +++|++|+.||+|++||+.+++  .+..+..|...|++++|+|+  +.+|++++.||.|++||++...  .
T Consensus        60 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  139 (379)
T 3jrp_A           60 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS  139 (379)
T ss_dssp             EEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC
T ss_pred             EEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee
Confidence            9999987  8999999999999999999887  77788889999999999999  9999999999999999998863  4


Q ss_pred             eEEeccCCCCeeEEEEcC-------------CCCEEEEEECCCcEEEEeCCCCc----EEEEeecCCCCEEEEEEecC--
Q 005277          498 LRIMAGHLSDVDCVRWHI-------------NCNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPD--  558 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p-------------~~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~i~~l~~spd--  558 (704)
                      ...+.+|...|.+++|+|             ++.+|++|+.||.|++||++++.    .+..+.+|...|.+++|+|+  
T Consensus       140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  219 (379)
T 3jrp_A          140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  219 (379)
T ss_dssp             EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence            456678999999999999             69999999999999999998764    45677889999999999999  


Q ss_pred             -CCEEEEEeCCCeEEEEeCCCCe-----eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277          559 -GRYMASGDEDGTIMMWDLASGR-----CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS  632 (704)
Q Consensus       559 -g~~l~sg~~dg~I~iwdl~~~~-----~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  632 (704)
                       +++|++++.||.|++||+.++.     .+.....|...|+++.|                                  +
T Consensus       220 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------s  265 (379)
T 3jrp_A          220 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW----------------------------------S  265 (379)
T ss_dssp             SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEE----------------------------------C
T ss_pred             CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEE----------------------------------c
Confidence             8999999999999999999863     23333458899999999                                  9


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCC
Q 005277          633 CEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       633 ~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                      |++.+|++++.||.|++|++...
T Consensus       266 ~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          266 LSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             SSSCCEEEEESSSSEEEEEEEET
T ss_pred             CCCCEEEEecCCCcEEEEeCCCC
Confidence            99999999999999999999743

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.1e-35  Score=314.12  Aligned_cols=275  Identities=13%  Similarity=0.096  Sum_probs=240.9

Q ss_pred             eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      ..|.+.|+|++|+|++++|++|+.||.|+||++.....                         ........+|...|.++
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-------------------------~~~~~~~~~~~~~v~~~   62 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-------------------------NVDLLQSLRYKHPLLCC   62 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-------------------------EEEEEEEEECSSCEEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-------------------------cccceeeeecCCceEEE
Confidence            46888999999999999999999999999999875210                         11234445899999999


Q ss_pred             EEcCCCC-EEEEEeCCCeEEEEeC-CCCceeEEeec--CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC---------
Q 005277          428 SFSPLGD-FILSSSADTTIRLWST-KLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR---------  494 (704)
Q Consensus       428 ~~sp~~~-~l~s~s~Dg~I~lwd~-~~~~~~~~~~~--h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~---------  494 (704)
                      +|+|+++ +|++|+.||.|++||+ .++. ...+.+  |...|++++|+| +.++++++.|+.|++||+++         
T Consensus        63 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  140 (342)
T 1yfq_A           63 NFIDNTDLQIYVGTVQGEILKVDLIGSPS-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             EEEESSSEEEEEEETTSCEEEECSSSSSS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             EECCCCCcEEEEEcCCCeEEEEEeccCCc-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccccc
Confidence            9999999 9999999999999999 7664 477788  999999999999 99999999999999999987         


Q ss_pred             CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-Cc--EEEEeecCCCCEEEEEEec-CCCEEEEEeCCCe
Q 005277          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GE--CVRIFIGHRSMILSLAMSP-DGRYMASGDEDGT  570 (704)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~--~~~~~~~h~~~i~~l~~sp-dg~~l~sg~~dg~  570 (704)
                      .+++..+. |...|.+++|+|++  +++++.|+.|++||+++ +.  .......|...|.+++|+| +++++++|+.||.
T Consensus       141 ~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  217 (342)
T 1yfq_A          141 NLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR  217 (342)
T ss_dssp             ESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred             CCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence            66666666 88999999999987  99999999999999998 54  3344557888999999999 9999999999999


Q ss_pred             EEEEeCCCC------eeeeeecCCCc---------eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC
Q 005277          571 IMMWDLASG------RCVTPLMGHTS---------CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG  635 (704)
Q Consensus       571 I~iwdl~~~------~~~~~~~~h~~---------~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  635 (704)
                      |++||+...      +....+..|..         .|.++.|                                  +|++
T Consensus       218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------------------------------s~~~  263 (342)
T 1yfq_A          218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF----------------------------------SPRH  263 (342)
T ss_dssp             EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE----------------------------------CTTT
T ss_pred             EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEE----------------------------------cCCC
Confidence            999999887      77778888765         8999999                                  9999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCC-CcCeEEEEEccCCcEEEEeecCCC
Q 005277          636 SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK-STPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       636 ~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ++|++|+.||.|++||+.++..               +..+..| ..+|.+++  |++.+|++|+.||+
T Consensus       264 ~~l~~~~~dg~i~vwd~~~~~~---------------~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          264 KFLYTAGSDGIISCWNLQTRKK---------------IKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             CCEEEEETTSCEEEEETTTTEE---------------EEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             CEEEEecCCceEEEEcCccHhH---------------hhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            9999999999999999988643               4556677 89999999  99999999999986

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.2e-34  Score=303.06  Aligned_cols=261  Identities=30%  Similarity=0.528  Sum_probs=232.4

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      ..+++|...... ....+.+|...|.+++|+|++++|++|+.||.|++||+..                           
T Consensus        45 g~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~---------------------------   96 (312)
T 4ery_A           45 KLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---------------------------   96 (312)
T ss_dssp             SCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---------------------------
T ss_pred             CeEEEEeCCCcc-cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC---------------------------
Confidence            467777654433 3445678999999999999999999999999999999875                           


Q ss_pred             CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEE
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI  489 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~l  489 (704)
                       ......+.+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+..|..+|.+++|+|++.+|++|+.||.|++
T Consensus        97 -~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  175 (312)
T 4ery_A           97 -GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  175 (312)
T ss_dssp             -CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             -CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence             2345667889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCceeEEec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEE--EEE-ecCCCEEEEE
Q 005277          490 WSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILS--LAM-SPDGRYMASG  565 (704)
Q Consensus       490 wd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~--l~~-spdg~~l~sg  565 (704)
                      ||+++++.+..+. .+...+.+++|+|++++|++++.||.|++||+++++++..+.+|...+.+  ..+ .+++.+|++|
T Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg  255 (312)
T 4ery_A          176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG  255 (312)
T ss_dssp             EETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred             EECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence            9999988877664 56678999999999999999999999999999999999999888765332  233 3678999999


Q ss_pred             eCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe--C
Q 005277          566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS--A  643 (704)
Q Consensus       566 ~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs--~  643 (704)
                      +.||.|++||+.+++.+..+.+|...|.+++|                                  +|++.++++++  .
T Consensus       256 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~----------------------------------~p~~~~l~s~~~~~  301 (312)
T 4ery_A          256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC----------------------------------HPTENIIASAALEN  301 (312)
T ss_dssp             CTTSCEEEEETTTCCEEEEECCCSSCEEEEEE----------------------------------CSSSSEEEEEECTT
T ss_pred             CCCCEEEEEECCCchhhhhhhccCCcEEEEee----------------------------------cCcCCceEEEEccC
Confidence            99999999999999999999999999999999                                  99999999997  6


Q ss_pred             CCcEEEEeCC
Q 005277          644 DCTVKLWDVT  653 (704)
Q Consensus       644 Dg~V~iWd~~  653 (704)
                      ||+|++|+.+
T Consensus       302 d~~i~~W~~d  311 (312)
T 4ery_A          302 DKTIKLWKSD  311 (312)
T ss_dssp             TCCEEEEECC
T ss_pred             CccEEEecCC
Confidence            9999999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.3e-35  Score=361.96  Aligned_cols=320  Identities=20%  Similarity=0.304  Sum_probs=273.0

Q ss_pred             CeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC
Q 005277          341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (704)
Q Consensus       341 ~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  420 (704)
                      ......+.+|.+.|+|++|+|+|++||+|+.||.|+|||+.+                            ......+.+|
T Consensus       605 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~----------------------------~~~~~~~~~h  656 (1249)
T 3sfz_A          605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET----------------------------GEKLLDIKAH  656 (1249)
T ss_dssp             CCCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------CCEEEEECCC
T ss_pred             ccceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC----------------------------CCEEEEeccC
Confidence            344556789999999999999999999999999999999875                            2345667799


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEEECCCCcee
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPL  498 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lwd~~~~~~~  498 (704)
                      .+.|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|  ++.++++|+.||.|++||+++++.+
T Consensus       657 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~  736 (1249)
T 3sfz_A          657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR  736 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE
T ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh
Confidence            99999999999999999999999999999999999999999999999999999  5668999999999999999999999


Q ss_pred             EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-----------------------------------
Q 005277          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-----------------------------------  543 (704)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-----------------------------------  543 (704)
                      ..+.+|...|.+++|+|+++++++|+.||+|++||++++.....+                                   
T Consensus       737 ~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~  816 (1249)
T 3sfz_A          737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA  816 (1249)
T ss_dssp             EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE
T ss_pred             heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE
Confidence            999999999999999999999999999999999999876544332                                   


Q ss_pred             --------------------ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeee----
Q 005277          544 --------------------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRF----  599 (704)
Q Consensus       544 --------------------~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~----  599 (704)
                                          .+|...|.+++|+|+++++++|+.||.|++||+.++..+..+.+|...|.++.|..    
T Consensus       817 ~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~  896 (1249)
T 3sfz_A          817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS  896 (1249)
T ss_dssp             ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCE
Confidence                                16778899999999999999999999999999999999999999999999999842    


Q ss_pred             -eehcccccccccccccc----------------------------------------ceeeeeeeEEeecccCCCCCEE
Q 005277          600 -LLLVTNAYLKISDKVST----------------------------------------GFLFYSLTIIYFGCASCEGSLL  638 (704)
Q Consensus       600 -~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~s~~g~~l  638 (704)
                       .....++.+.+|+....                                        .........+...+++|+++++
T Consensus       897 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l  976 (1249)
T 3sfz_A          897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV  976 (1249)
T ss_dssp             EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEE
T ss_pred             EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEE
Confidence             22223344444442210                                        0000111134556779999999


Q ss_pred             EEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          639 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       639 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ++|+.||.|++|++.++..               +..+..|..+|.+++|+|+|.+|++|+.||+
T Consensus       977 ~~g~~~g~i~i~d~~~~~~---------------~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~ 1026 (1249)
T 3sfz_A          977 AFGDEDGAIKIIELPNNRV---------------FSSGVGHKKAVRHIQFTADGKTLISSSEDSV 1026 (1249)
T ss_dssp             EEEETTSCCEEEETTTTSC---------------EEECCCCSSCCCCEEECSSSSCEEEECSSSB
T ss_pred             EEEcCCCCEEEEEcCCCce---------------eeecccCCCceEEEEECCCCCEEEEEcCCCE
Confidence            9999999999999987643               4456688999999999999999999999874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.6e-35  Score=307.95  Aligned_cols=275  Identities=19%  Similarity=0.273  Sum_probs=240.2

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      -+.++|.+++|+|||++++++..++.+.+|....                            ........+|.++|.+++
T Consensus         7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~h~~~v~~~~   58 (337)
T 1gxr_A            7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR----------------------------HARQINTLNHGEVVCAVT   58 (337)
T ss_dssp             EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCS----------------------------EEEEEEEECCSSCCCEEE
T ss_pred             ccCCceeEEEECCCCCEEEeecCCCcEeccccCC----------------------------ccccceeccCCCceEEEE
Confidence            3456799999999999999998877765554322                            112233447999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCcee---EEee--cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEe
Q 005277          429 FSPLGDFILSSSADTTIRLWSTKLNANL---VCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLRIM  501 (704)
Q Consensus       429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~---~~~~--~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~--~~~~~  501 (704)
                      |+|++++|++++ ||.|++|++.++...   ..+.  +|..+|.+++|+|+++++++++.||.|++||+++++  ....+
T Consensus        59 ~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  137 (337)
T 1gxr_A           59 ISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL  137 (337)
T ss_dssp             ECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE
T ss_pred             EecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeec
Confidence            999999999999 999999999876543   3333  789999999999999999999999999999999877  56677


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~  581 (704)
                      ..|...|.+++|+|+++++++++.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus       138 ~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  217 (337)
T 1gxr_A          138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ  217 (337)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277          582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT  661 (704)
Q Consensus       582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~  661 (704)
                      +..+. |...+.++.|                                  +|++.++++|+.||.|++||+.++..    
T Consensus       218 ~~~~~-~~~~v~~~~~----------------------------------s~~~~~l~~~~~~~~i~~~~~~~~~~----  258 (337)
T 1gxr_A          218 LQQHD-FTSQIFSLGY----------------------------------CPTGEWLAVGMESSNVEVLHVNKPDK----  258 (337)
T ss_dssp             EEEEE-CSSCEEEEEE----------------------------------CTTSSEEEEEETTSCEEEEETTSSCE----
T ss_pred             Eeeec-CCCceEEEEE----------------------------------CCCCCEEEEEcCCCcEEEEECCCCCe----
Confidence            87764 7788999999                                  99999999999999999999987542    


Q ss_pred             ccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          662 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       662 ~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                  ..+..|..+|.+++|+|++.+|++++.||+
T Consensus       259 ------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  288 (337)
T 1gxr_A          259 ------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNL  288 (337)
T ss_dssp             ------------EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ------------EEEcCCccceeEEEECCCCCEEEEecCCCc
Confidence                        245578889999999999999999998874

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.1e-35  Score=307.89  Aligned_cols=253  Identities=22%  Similarity=0.385  Sum_probs=222.9

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      +.+|.+.|+|++|+|++++||+|+.||.|+||++....                        ........+.+|.++|.+
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------------------~~~~~~~~~~~~~~~v~~   62 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT------------------------SNWELSDSWRAHDSSIVA   62 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS------------------------CCEEEEEEEECCSSCEEE
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC------------------------CcceecceeccCCCcEEE
Confidence            56899999999999999999999999999999987521                        112345667899999999


Q ss_pred             EEEcC--CCCEEEEEeCCCeEEEEeCCCC---------ceeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEEEEECC
Q 005277          427 ASFSP--LGDFILSSSADTTIRLWSTKLN---------ANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMD  493 (704)
Q Consensus       427 l~~sp--~~~~l~s~s~Dg~I~lwd~~~~---------~~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~lwd~~  493 (704)
                      ++|+|  ++++|++|+.||+|++||+.++         ..+..+.+|..+|++++|+|+  +.++++++.||.|++||++
T Consensus        63 ~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~  142 (351)
T 3f3f_A           63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL  142 (351)
T ss_dssp             EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred             EEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence            99999  6999999999999999999877         457788899999999999999  9999999999999999998


Q ss_pred             CCceeEEec-------------cCCCCeeEEEEcCC---CCEEEEEECCCcEEEEeCCCCcE--EEEeecCCCCEEEEEE
Q 005277          494 RIQPLRIMA-------------GHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAM  555 (704)
Q Consensus       494 ~~~~~~~~~-------------~~~~~V~~v~~~p~---~~~l~tgs~dg~I~iwd~~~~~~--~~~~~~h~~~i~~l~~  555 (704)
                      +++.+..+.             .|...+.+++|+|+   +.++++++.++.+.+|+...++.  +..+.+|...|++++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  222 (351)
T 3f3f_A          143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW  222 (351)
T ss_dssp             STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE
T ss_pred             ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEE
Confidence            876543332             67889999999997   99999999999999998887765  6777899999999999


Q ss_pred             ecCC----CEEEEEeCCCeEEEEeCCCC----------------------------------------------eeeeee
Q 005277          556 SPDG----RYMASGDEDGTIMMWDLASG----------------------------------------------RCVTPL  585 (704)
Q Consensus       556 spdg----~~l~sg~~dg~I~iwdl~~~----------------------------------------------~~~~~~  585 (704)
                      +|++    ++|++|+.||.|++||++++                                              +.+..+
T Consensus       223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (351)
T 3f3f_A          223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH  302 (351)
T ss_dssp             CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred             CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence            9998    89999999999999999875                                              566667


Q ss_pred             cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          586 MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       586 ~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      .+|...|+++.|                                  +|++++|++|+.||.|+||++.++..
T Consensus       303 ~~h~~~v~~~~~----------------------------------s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          303 DDHNGEVWSVSW----------------------------------NLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             CTTSSCEEEEEE----------------------------------CSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             ecccccEEEEEE----------------------------------cCCCCEEEEecCCCcEEEEecCcCcc
Confidence            788888888888                                  99999999999999999999998754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.4e-35  Score=303.61  Aligned_cols=245  Identities=22%  Similarity=0.331  Sum_probs=211.8

Q ss_pred             eeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEE
Q 005277          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL--NANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW  490 (704)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~--~~~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lw  490 (704)
                      ..+.+|.+.|++++|+|++++|++|+.|++|+|||+..  .+.+..+.+|..+|++++|+|  ++.+|++|+.||+|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45678999999999999999999999999999999974  367788999999999999986  48999999999999999


Q ss_pred             ECCCCc--eeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCc--EEEEeecCCCCEEEEEEecC------
Q 005277          491 SMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPD------  558 (704)
Q Consensus       491 d~~~~~--~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~i~~l~~spd------  558 (704)
                      |+++++  .+..+.+|...|.+++|+|+  +.+|++|+.|++|++||++++.  ....+.+|...|.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998763  56777889999999999997  8999999999999999998763  24567799999999999997      


Q ss_pred             -------CCEEEEEeCCCeEEEEeCCCCe----eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277          559 -------GRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY  627 (704)
Q Consensus       559 -------g~~l~sg~~dg~I~iwdl~~~~----~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (704)
                             +++|++|+.||.|++||++++.    ....+.+|...|.+++|                              
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~------------------------------  212 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW------------------------------  212 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE------------------------------
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEE------------------------------
Confidence                   5799999999999999998765    56788999999999999                              


Q ss_pred             ecccCCCC---CEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          628 FGCASCEG---SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       628 ~~~~s~~g---~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                          +|++   .+|++|+.||+|+|||+........          ..+.....+...|.+++|+|+|.+||+|+.||+
T Consensus       213 ----sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~  277 (297)
T 2pm7_B          213 ----SPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK----------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  277 (297)
T ss_dssp             ----CCCCSSSEEEEEEETTSCEEEEEESSTTSCCE----------EEESSSSCCSSCEEEEEECSSSCCEEEEETTSC
T ss_pred             ----CCCCCCceEEEEEECCCcEEEEEeCCCCCccc----------eeeeecccCCCcEEEEEECCCCCEEEEEcCCCc
Confidence                8884   8999999999999999876431100          011112456788999999999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-34  Score=314.31  Aligned_cols=279  Identities=20%  Similarity=0.275  Sum_probs=239.5

Q ss_pred             EEeeCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          346 TFINTHNG--LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       346 ~~~~~~~~--V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      ...+|...  +.+++|++  ..+++++.||.|++|++.+...                           .......|.+.
T Consensus        86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~---------------------------~~~~~~~~~~~  136 (401)
T 4aez_A           86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSV---------------------------SALAETDESTY  136 (401)
T ss_dssp             ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCE---------------------------EEEEECCTTCC
T ss_pred             eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcE---------------------------eEeeecCCCCC
Confidence            33455554  55566665  4577888999999999875211                           11222348899


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeEEec
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIMA  502 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~-~~~~~~~~~  502 (704)
                      |.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|  ++.++++|+.||.|++||++ ....+..+.
T Consensus       137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  214 (401)
T 4aez_A          137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ  214 (401)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEc
Confidence            999999999999999999999999999999999999999999999999  56799999999999999998 566788888


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCC-EEEEEe--CCCeEEEEeCCCC
Q 005277          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMASGD--EDGTIMMWDLASG  579 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~sg~--~dg~I~iwdl~~~  579 (704)
                      +|...|.+++|+|++++|++|+.||.|++||+++++++..+.+|...|.+++|+|++. ++++|+  .||.|++||+.++
T Consensus       215 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~  294 (401)
T 4aez_A          215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG  294 (401)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred             CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence            9999999999999999999999999999999999999999999999999999999764 566655  7999999999999


Q ss_pred             eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE--EeCCCcEEEEeCCCCcc
Q 005277          580 RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS--GSADCTVKLWDVTTSTK  657 (704)
Q Consensus       580 ~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las--gs~Dg~V~iWd~~~~~~  657 (704)
                      +.+..+. |...|.++.|                                  ++++.++++  |+.||.|++||+.++..
T Consensus       295 ~~~~~~~-~~~~v~~~~~----------------------------------s~~~~~l~~~~g~~dg~i~v~~~~~~~~  339 (401)
T 4aez_A          295 ARVNTVD-AGSQVTSLIW----------------------------------SPHSKEIMSTHGFPDNNLSIWSYSSSGL  339 (401)
T ss_dssp             CEEEEEE-CSSCEEEEEE----------------------------------CSSSSEEEEEECTTTCEEEEEEEETTEE
T ss_pred             CEEEEEe-CCCcEEEEEE----------------------------------CCCCCeEEEEeecCCCcEEEEecCCccc
Confidence            9988886 6678999999                                  999999998  55899999999987543


Q ss_pred             ccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          658 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       658 ~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                   .....+..|..+|.+++|+|+|.+|++|+.||+
T Consensus       340 -------------~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~  372 (401)
T 4aez_A          340 -------------TKQVDIPAHDTRVLYSALSPDGRILSTAASDEN  372 (401)
T ss_dssp             -------------EEEEEEECCSSCCCEEEECTTSSEEEEECTTSE
T ss_pred             -------------eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence                         223456678899999999999999999999874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5e-34  Score=314.16  Aligned_cols=310  Identities=25%  Similarity=0.461  Sum_probs=256.2

Q ss_pred             EEeeCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          346 TFINTHNGL-NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       346 ~~~~~~~~V-~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      .+.+|.+.| +|+.  ++|++|++|+.||.|++||+.+                            ......+.+|.++|
T Consensus       113 ~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~----------------------------~~~~~~~~~h~~~v  162 (445)
T 2ovr_B          113 VLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVT----------------------------GKCLRTLVGHTGGV  162 (445)
T ss_dssp             EEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTT----------------------------CCEEEECCCCSSCE
T ss_pred             EecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCC----------------------------CcEEEEEcCCCCCE
Confidence            467888875 5544  5689999999999999999875                            23456678999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      .+++|+  ++++++|+.||+|++||+.+++.+..+.+|...|.++.|+  +..+++|+.||+|++||+++++.+..+.+|
T Consensus       163 ~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~  238 (445)
T 2ovr_B          163 WSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGH  238 (445)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred             EEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            999998  6799999999999999999999999999999999999995  678999999999999999999999999999


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP  584 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~  584 (704)
                      ...|.+++|  +++++++|+.||.|++||+++++++..+.+|...|.+++|  ++.++++|+.||.|++||+++++.+..
T Consensus       239 ~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~  314 (445)
T 2ovr_B          239 VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT  314 (445)
T ss_dssp             SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            999999999  7889999999999999999999999999999999999999  899999999999999999999999999


Q ss_pred             ecCCCceeeeeeeeee---ehccccccccccccccceeeeee----eEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          585 LMGHTSCVWTLAYRFL---LLVTNAYLKISDKVSTGFLFYSL----TIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       585 ~~~h~~~V~sl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      +.+|...+.++.+...   ....++.+.+++...........    ....+.++..++++|++|+.||.|++||+.+++.
T Consensus       315 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          315 LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF  394 (445)
T ss_dssp             ECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred             EcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCce
Confidence            9999999998887432   22234455666543322111100    1111223344678999999999999999998765


Q ss_pred             ccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          658 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       658 ~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      +.....          .....+.++|.+++|+|++.+||+|+.||+
T Consensus       395 ~~~~~~----------~~~~~~~~~v~~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          395 IRNLVT----------LESGGSGGVVWRIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             EEEEEE----------CTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             eeeeec----------cccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence            422100          111457789999999999999999999986

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-34  Score=342.64  Aligned_cols=221  Identities=12%  Similarity=0.172  Sum_probs=191.4

Q ss_pred             EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      ....+|.+.|+|++|+|++++||+|+.||.|+||+....                            .. .....|..+|
T Consensus        11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~----------------------------~~-~~~~~~~~~V   61 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV----------------------------EV-VIKLEDRSAI   61 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC----------------------------EE-EEECSSCCCE
T ss_pred             ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc----------------------------EE-EEEcCCCCCE
Confidence            345689999999999999999999999999999997541                            11 1223478899


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee------
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL------  498 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~------  498 (704)
                      .+++|+| +++|++++.|++|++||+.+++.+..+. |...|++++|+|++.++++|+.||+|++||++++...      
T Consensus        62 ~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~  139 (902)
T 2oaj_A           62 KEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDN  139 (902)
T ss_dssp             EEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECC
T ss_pred             EEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecc
Confidence            9999999 8899999999999999999999988886 6789999999999999999999999999999987653      


Q ss_pred             -----EEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecC------------------CCCEEEEE
Q 005277          499 -----RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGH------------------RSMILSLA  554 (704)
Q Consensus       499 -----~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h------------------~~~i~~l~  554 (704)
                           ..+.+|.+.|.+++|+|+ +..+++|+.||.| +||+++++++..+..|                  ...|.+++
T Consensus       140 ~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~  218 (902)
T 2oaj_A          140 LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL  218 (902)
T ss_dssp             HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred             ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence                 223578899999999996 5789999999999 9999999999888766                  47799999


Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCeeeee--e---cC-------------CCceeeeeee
Q 005277          555 MSPDGRYMASGDEDGTIMMWDLASGRCVTP--L---MG-------------HTSCVWTLAY  597 (704)
Q Consensus       555 ~spdg~~l~sg~~dg~I~iwdl~~~~~~~~--~---~~-------------h~~~V~sl~~  597 (704)
                      |+|+|++|++|+.||.|++||+++++++..  +   ..             |...|++++|
T Consensus       219 fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w  279 (902)
T 2oaj_A          219 YHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYW  279 (902)
T ss_dssp             ECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEE
T ss_pred             EcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEE
Confidence            999999999999999999999999987653  2   12             3457888888

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-34  Score=312.85  Aligned_cols=294  Identities=23%  Similarity=0.349  Sum_probs=246.1

Q ss_pred             cCCCCCCCCCCCCCCCCChhHHHHHHHhccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005277          300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWD  379 (704)
Q Consensus       300 ~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwd  379 (704)
                      .+...|....+.+...+.+.....+.......+++|+.............|...|++++|+|++++|++|+.||.|++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  162 (401)
T 4aez_A           83 RVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD  162 (401)
T ss_dssp             EEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence            33444554555555555555433333445678999988776665555555888999999999999999999999999999


Q ss_pred             cccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeEE
Q 005277          380 MAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-LNANLVC  458 (704)
Q Consensus       380 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~-~~~~~~~  458 (704)
                      +..                            ......+.+|.+.|.+++|+  +.+|++|+.||.|++||++ ....+..
T Consensus       163 ~~~----------------------------~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~  212 (401)
T 4aez_A          163 VES----------------------------QTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGT  212 (401)
T ss_dssp             TTT----------------------------CCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CcC----------------------------CeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeE
Confidence            875                            23456677899999999995  6799999999999999999 4667888


Q ss_pred             eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCC-CEEEEEE--CCCcEEEEeCC
Q 005277          459 YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIATGS--SDKTVRLWDVS  535 (704)
Q Consensus       459 ~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs--~dg~I~iwd~~  535 (704)
                      +.+|...|.+++|+|++.+|++|+.||.|++||++++.++..+..|...|.+++|+|++ .++++|+  .|+.|++||++
T Consensus       213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~  292 (401)
T 4aez_A          213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA  292 (401)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred             EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence            89999999999999999999999999999999999999999999999999999999976 5666655  79999999999


Q ss_pred             CCcEEEEeecCCCCEEEEEEecCCCEEEEE--eCCCeEEEEeCCCCeeee--eecCCCceeeeeeeeeeehccccccccc
Q 005277          536 SGECVRIFIGHRSMILSLAMSPDGRYMASG--DEDGTIMMWDLASGRCVT--PLMGHTSCVWTLAYRFLLLVTNAYLKIS  611 (704)
Q Consensus       536 ~~~~~~~~~~h~~~i~~l~~spdg~~l~sg--~~dg~I~iwdl~~~~~~~--~~~~h~~~V~sl~~~~~~~~~~~~~~~~  611 (704)
                      +++++..+. +...|.+++|+|+|++|+++  +.||.|++||+.++....  .+.+|...|.++.|              
T Consensus       293 ~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~--------------  357 (401)
T 4aez_A          293 TGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSAL--------------  357 (401)
T ss_dssp             TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEE--------------
T ss_pred             CCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEE--------------
Confidence            999998885 66789999999999999994  489999999999876544  46789999999999              


Q ss_pred             cccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277          612 DKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~  658 (704)
                                          +|++.+|++|+.||.|++|++.++..+
T Consensus       358 --------------------s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          358 --------------------SPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             --------------------CTTSSEEEEECTTSEEEEEECCC----
T ss_pred             --------------------CCCCCEEEEEeCCCcEEEEECCCCccc
Confidence                                999999999999999999999987654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=304.76  Aligned_cols=296  Identities=18%  Similarity=0.269  Sum_probs=238.4

Q ss_pred             EEeeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          346 TFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      .+..|.+.|+|++|+| ++++||+|+.||.|+||++.............               ..........+|.+.|
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~v  102 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA---------------VCSIGRDHPDVHRYSV  102 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE---------------EEEECTTCTTCCSSCE
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc---------------cccccccccccCCCcE
Confidence            4567999999999999 99999999999999999998633211110000               0000011124699999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC---CCEEEEEeCCCeEEEEECCCCceeEE
Q 005277          425 YSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ---GHYFASSSHDRTARIWSMDRIQPLRI  500 (704)
Q Consensus       425 ~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~---~~~l~sgs~dg~i~lwd~~~~~~~~~  500 (704)
                      .+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|+|.   +.++++|+.||.|++||+++++.+..
T Consensus       103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  181 (408)
T 4a11_B          103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI  181 (408)
T ss_dssp             EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred             EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence            9999999 77899999999999999999998888776 7788999999994   45999999999999999999999999


Q ss_pred             eccCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCc-EEEEe---------------ecCCCCEEEEEEecCCCEEE
Q 005277          501 MAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGE-CVRIF---------------IGHRSMILSLAMSPDGRYMA  563 (704)
Q Consensus       501 ~~~~~~~V~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~-~~~~~---------------~~h~~~i~~l~~spdg~~l~  563 (704)
                      +.+|...|.+++|+|+++ ++++|+.||.|++||++++. ++..+               .+|...|.+++|+|+|++|+
T Consensus       182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  261 (408)
T 4a11_B          182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL  261 (408)
T ss_dssp             ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred             ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence            999999999999999998 58999999999999998765 44444               57889999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCeeeeeecCCCce--eeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEE
Q 005277          564 SGDEDGTIMMWDLASGRCVTPLMGHTSC--VWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG  641 (704)
Q Consensus       564 sg~~dg~I~iwdl~~~~~~~~~~~h~~~--V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasg  641 (704)
                      +++.||.|++||+.+++....+..+...  ...+.+.                               .....+..++++
T Consensus       262 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~  310 (408)
T 4a11_B          262 TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT-------------------------------VSCGCSSEFVFV  310 (408)
T ss_dssp             EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCE-------------------------------ECCSSSSCEEEE
T ss_pred             EecCCCeEEEEECCCCccceeccccccccccccceeE-------------------------------EecCCCceEEEE
Confidence            9999999999999998876655443211  1111110                               003345567777


Q ss_pred             eCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          642 SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       642 s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      +.||.|++||+.++..               +..+..|..+|.+++|+|++.+|++|+.||+
T Consensus       311 ~~~~~i~v~d~~~~~~---------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  357 (408)
T 4a11_B          311 PYGSTIAVYTVYSGEQ---------------ITMLKGHYKTVDCCVFQSNFQELYSGSRDCN  357 (408)
T ss_dssp             EETTEEEEEETTTCCE---------------EEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             ecCCEEEEEECcCCcc---------------eeeeccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence            8899999999988653               5567788999999999999999999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=8.5e-34  Score=301.84  Aligned_cols=285  Identities=19%  Similarity=0.309  Sum_probs=239.9

Q ss_pred             CCeEEEEEeeCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceee
Q 005277          340 PSVSFYTFINTHNGLNCASISQD---GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL  416 (704)
Q Consensus       340 p~~~~~~~~~~~~~V~~~~fs~d---g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (704)
                      |......+.+|.+.|+|++|+|+   |++|++|+.||.|+||++....                          ......
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~--------------------------~~~~~~   81 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--------------------------QTIPKA   81 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--------------------------CEEEEE
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--------------------------ceeEEE
Confidence            33344457789999999999999   6999999999999999987511                          223356


Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEE--cCCCCEEEEEeCCCeEEEEECCC
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF--NPQGHYFASSSHDRTARIWSMDR  494 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~--sp~~~~l~sgs~dg~i~lwd~~~  494 (704)
                      +.+|.++|.+++|+|++++|++++.||+|++||+.+++.+. +..|..+|++++|  +|++.+|++++.||.|++||+++
T Consensus        82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  160 (368)
T 3mmy_A           82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS  160 (368)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred             eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence            77899999999999999999999999999999999887665 5669999999999  89999999999999999999999


Q ss_pred             CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe--ecCCCCEEEEEEecCCCE----EEEEeCC
Q 005277          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRY----MASGDED  568 (704)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~--~~h~~~i~~l~~spdg~~----l~sg~~d  568 (704)
                      ++++..+..+. .+.++.+.  +..+++++.++.+++||++........  ..+...+.++++.+++..    +++|+.|
T Consensus       161 ~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  237 (368)
T 3mmy_A          161 SNPMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE  237 (368)
T ss_dssp             SSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CcEEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence            99998888664 56666655  458899999999999999876543332  234456777777776654    9999999


Q ss_pred             CeEEEEeCCCC---eeeeeecCCCc------------eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277          569 GTIMMWDLASG---RCVTPLMGHTS------------CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC  633 (704)
Q Consensus       569 g~I~iwdl~~~---~~~~~~~~h~~------------~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  633 (704)
                      |.|++||++..   ..+..+.+|..            .|.++.|                                  +|
T Consensus       238 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------sp  283 (368)
T 3mmy_A          238 GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF----------------------------------HP  283 (368)
T ss_dssp             SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEE----------------------------------CT
T ss_pred             CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEE----------------------------------ec
Confidence            99999999987   56677777776            6889988                                  99


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          634 EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       634 ~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ++++|++|+.||.|++||+.++..               +..+..|..+|.+++|+|+|.+|++|+.|+.
T Consensus       284 ~~~~l~s~~~dg~i~iwd~~~~~~---------------~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~  338 (368)
T 3mmy_A          284 VHGTLATVGSDGRFSFWDKDARTK---------------LKTSEQLDQPISACCFNHNGNIFAYASSYDW  338 (368)
T ss_dssp             TTCCEEEEETTSCEEEEETTTTEE---------------EEECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred             CCCEEEEEccCCeEEEEECCCCcE---------------EEEecCCCCCceEEEECCCCCeEEEEecccc
Confidence            999999999999999999987643               4566788999999999999999999998863

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.7e-34  Score=309.19  Aligned_cols=269  Identities=16%  Similarity=0.261  Sum_probs=234.9

Q ss_pred             cCeEeecCCCCCC-----eEEEEEeeCCCCEEEEEEcCC----C---CEEEEEeCCCcEEEEEcccCCccccccccCCCC
Q 005277          329 RNRVHLSSAALPS-----VSFYTFINTHNGLNCASISQD----G---SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN  396 (704)
Q Consensus       329 ~~~~~l~~~~~p~-----~~~~~~~~~~~~V~~~~fs~d----g---~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~  396 (704)
                      ...+++|......     ....++.+|...|++++|+|+    +   ++|++|+.||.|++|++......          
T Consensus        35 dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~----------  104 (397)
T 1sq9_A           35 DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET----------  104 (397)
T ss_dssp             TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT----------
T ss_pred             CCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc----------
Confidence            3467777665443     345667799999999999999    9   99999999999999998762210          


Q ss_pred             CCCCcccccCCCCCccceeeccCC-----ccCeEEEEEc----CCCCE-EEEEeCCCeEEEEeCCC------CceeE---
Q 005277          397 DTTPREDIIGPNGRKRSYTLYQGH-----SGPVYSASFS----PLGDF-ILSSSADTTIRLWSTKL------NANLV---  457 (704)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~s----p~~~~-l~s~s~Dg~I~lwd~~~------~~~~~---  457 (704)
                                   .......+.+|     ...|.+++|+    |++++ |++++.||.|++||+.+      +..+.   
T Consensus       105 -------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  171 (397)
T 1sq9_A          105 -------------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  171 (397)
T ss_dssp             -------------CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             -------------ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence                         01124566677     6999999999    99999 99999999999999998      66666   


Q ss_pred             --Eee-------cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc---C---CCCeeEEEEcCCCCEEEE
Q 005277          458 --CYK-------GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---H---LSDVDCVRWHINCNYIAT  522 (704)
Q Consensus       458 --~~~-------~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~---~---~~~V~~v~~~p~~~~l~t  522 (704)
                        .+.       .|...|++++|+|++ ++++|+.||.|++||+++++++..+..   |   ...|.+++|+|++++|++
T Consensus       172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~  250 (397)
T 1sq9_A          172 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI  250 (397)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred             cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence              674       488999999999999 999999999999999999999999998   8   999999999999999999


Q ss_pred             EECC---CcEEEEeCCCCcEEEEeec-------------CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277          523 GSSD---KTVRLWDVSSGECVRIFIG-------------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (704)
Q Consensus       523 gs~d---g~I~iwd~~~~~~~~~~~~-------------h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~  586 (704)
                      ++.|   |.|++||+++++.+..+.+             |...|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus       251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            9999   9999999999999999988             99999999999999999999999999999999999999998


Q ss_pred             ------CC---------------CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC----------
Q 005277          587 ------GH---------------TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG----------  635 (704)
Q Consensus       587 ------~h---------------~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g----------  635 (704)
                            +|               ...|.++.|                                  +|++          
T Consensus       331 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~----------------------------------~~~g~~~~~~~~~~  376 (397)
T 1sq9_A          331 MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF----------------------------------LKKGWRSGMGADLN  376 (397)
T ss_dssp             CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE----------------------------------ECTTTSBSTTCTTS
T ss_pred             cccCcccchhhhhccccccccccCCceeEEEe----------------------------------cccccccccccccc
Confidence                  88               899999999                                  8887          


Q ss_pred             CEEEEEeCCCcEEEEeCCCC
Q 005277          636 SLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       636 ~~lasgs~Dg~V~iWd~~~~  655 (704)
                      .+|++|+.||.|++|++.++
T Consensus       377 ~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          377 ESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             CEEEEEETTTEEEEEEEEC-
T ss_pred             ceEEEecCCCcEEEEEcCCC
Confidence            79999999999999998765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6e-33  Score=317.23  Aligned_cols=291  Identities=20%  Similarity=0.279  Sum_probs=241.5

Q ss_pred             eEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       331 ~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      .+.+|..   ......+.+|...|++++|+|++. ++++|+.||.|++||+..                           
T Consensus       143 ~v~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~---------------------------  192 (615)
T 1pgu_A          143 VFISWDS---GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP---------------------------  192 (615)
T ss_dssp             EEEETTT---CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT---------------------------
T ss_pred             EEEEEEC---CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC---------------------------
Confidence            5666762   234556788999999999999998 899999999999999765                           


Q ss_pred             CccceeeccCCcc---CeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEe-e---cCCcCeeEEEEcCCCCEEEEE
Q 005277          410 RKRSYTLYQGHSG---PVYSASFSPL-GDFILSSSADTTIRLWSTKLNANLVCY-K---GHNYPVWDVQFNPQGHYFASS  481 (704)
Q Consensus       410 ~~~~~~~~~~h~~---~V~~l~~sp~-~~~l~s~s~Dg~I~lwd~~~~~~~~~~-~---~h~~~V~~v~~sp~~~~l~sg  481 (704)
                       ......+.+|..   .|.+++|+|+ +++|++++.||.|++||+.+++.+..+ .   .|..+|.+++|+ ++.+|+++
T Consensus       193 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~  270 (615)
T 1pgu_A          193 -FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV  270 (615)
T ss_dssp             -BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE
T ss_pred             -cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE
Confidence             344566778988   9999999999 999999999999999999999999988 6   899999999999 99999999


Q ss_pred             eCCCeEEEEECCCCceeEEec---------------------------------------------cCCCCeeEEEEcCC
Q 005277          482 SHDRTARIWSMDRIQPLRIMA---------------------------------------------GHLSDVDCVRWHIN  516 (704)
Q Consensus       482 s~dg~i~lwd~~~~~~~~~~~---------------------------------------------~~~~~V~~v~~~p~  516 (704)
                      +.||.|++||+++++.+..+.                                             +|...|.+++| |+
T Consensus       271 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~  349 (615)
T 1pgu_A          271 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP  349 (615)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence            999999999998665443332                                             23333333332 21


Q ss_pred             --------------------------------------------------------------------------------
Q 005277          517 --------------------------------------------------------------------------------  516 (704)
Q Consensus       517 --------------------------------------------------------------------------------  516 (704)
                                                                                                      
T Consensus       350 l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  429 (615)
T 1pgu_A          350 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDL  429 (615)
T ss_dssp             TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEE
T ss_pred             cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCce
Confidence                                                                                            


Q ss_pred             --------------------------CCEEEEEEC-CCcEEEEeCCCCcEE-EEeecCCCCEEEEEEecCCCEEEEEeCC
Q 005277          517 --------------------------CNYIATGSS-DKTVRLWDVSSGECV-RIFIGHRSMILSLAMSPDGRYMASGDED  568 (704)
Q Consensus       517 --------------------------~~~l~tgs~-dg~I~iwd~~~~~~~-~~~~~h~~~i~~l~~spdg~~l~sg~~d  568 (704)
                                                +++|++++. |+.|++||+.++... ..+.+|...|++++|+|+|++|++|+.|
T Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  509 (615)
T 1pgu_A          430 LILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM  509 (615)
T ss_dssp             EEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCC
Confidence                                      334455555 666666666555444 4556788999999999999999999999


Q ss_pred             CeEEEEeCCCCeeeeeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC----------CCCE
Q 005277          569 GTIMMWDLASGRCVTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC----------EGSL  637 (704)
Q Consensus       569 g~I~iwdl~~~~~~~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----------~g~~  637 (704)
                      |.|++||+.+++.+..+.+ |...|+++.|                                  +|          ++.+
T Consensus       510 g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~----------------------------------sp~~~~~~~~~~~~~~  555 (615)
T 1pgu_A          510 GKILLYDLQSREVKTSRWAFRTSKINAISW----------------------------------KPAEKGANEEEIEEDL  555 (615)
T ss_dssp             SCEEEEETTTTEEEECCSCCCSSCEEEEEE----------------------------------CCCC------CCSCCE
T ss_pred             CeEEEeeCCCCcceeEeecCCCCceeEEEE----------------------------------cCccccccccccCCCE
Confidence            9999999999999999988 9999999999                                  89          9999


Q ss_pred             EEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          638 LASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       638 lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      |++|+.||.|++||+.++..              .+..+..|..+|.+++|+|++. |++|+.||+
T Consensus       556 l~~~~~dg~i~iw~~~~~~~--------------~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~  606 (615)
T 1pgu_A          556 VATGSLDTNIFIYSVKRPMK--------------IIKALNAHKDGVNNLLWETPST-LVSSGADAC  606 (615)
T ss_dssp             EEEEETTSCEEEEESSCTTC--------------CEEETTSSTTCEEEEEEEETTE-EEEEETTSC
T ss_pred             EEEEcCCCcEEEEECCCCce--------------echhhhcCccceEEEEEcCCCC-eEEecCCce
Confidence            99999999999999988632              3556778999999999999999 999999985

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.4e-33  Score=309.77  Aligned_cols=274  Identities=28%  Similarity=0.565  Sum_probs=241.5

Q ss_pred             eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      .+|..+|.|+.|  ++++|++|+.||.|++||+.+                            ......+.+|.++|.++
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~l  179 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT----------------------------LECKRILTGHTGSVLCL  179 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS----------------------------CCEEEEECCCSSCEEEE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC----------------------------CeEEEEEcCCCCcEEEE
Confidence            456678999987  789999999999999999875                            23456678999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---EEeccC
Q 005277          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL---RIMAGH  504 (704)
Q Consensus       428 ~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~---~~~~~~  504 (704)
                      +|  ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+  +.++++|+.||.|++||++++...   ..+.+|
T Consensus       180 ~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  255 (435)
T 1p22_A          180 QY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH  255 (435)
T ss_dssp             EC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred             EE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence            99  68899999999999999999999999999999999999997  459999999999999999987765   677899


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP  584 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~  584 (704)
                      ...|.+++|  +++++++|+.||.|++||+++++++..+.+|...|.+++|  +++++++|+.||.|++||+++++++..
T Consensus       256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~  331 (435)
T 1p22_A          256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV  331 (435)
T ss_dssp             SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            999999999  7889999999999999999999999999999999999999  478999999999999999999999999


Q ss_pred             ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccc
Q 005277          585 LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK  664 (704)
Q Consensus       585 ~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~  664 (704)
                      +.+|...|.++.|                                    ++.+|++|+.||.|++||+.++.....    
T Consensus       332 ~~~h~~~v~~~~~------------------------------------~~~~l~sg~~dg~i~vwd~~~~~~~~~----  371 (435)
T 1p22_A          332 LEGHEELVRCIRF------------------------------------DNKRIVSGAYDGKIKVWDLVAALDPRA----  371 (435)
T ss_dssp             ECCCSSCEEEEEC------------------------------------CSSEEEEEETTSCEEEEEHHHHTSTTS----
T ss_pred             EeCCcCcEEEEEe------------------------------------cCCEEEEEeCCCcEEEEECCCCCCccc----
Confidence            9999999999876                                    578999999999999999876542110    


Q ss_pred             cCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          665 SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       665 ~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                        ......+..+..|..+|.+++|  ++.+|++|+.||+
T Consensus       372 --~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~  406 (435)
T 1p22_A          372 --PAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT  406 (435)
T ss_dssp             --CTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE
T ss_pred             --cccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCE
Confidence              0111246677889999999999  7888999999984

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.1e-34  Score=306.76  Aligned_cols=284  Identities=12%  Similarity=0.104  Sum_probs=223.7

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeCCC-------cEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277          349 NTHNGLNCASISQDGSLVAGGFSDS-------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~dg-------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (704)
                      +..-+|+|++|+|||++||+|+.+.       .|++|++...........                  .......+.+|.
T Consensus        12 ~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~------------------~~~~~~~l~~~~   73 (365)
T 4h5i_A           12 NVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF------------------HILSEFALEDND   73 (365)
T ss_dssp             ECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE------------------EEEEEEECCTTS
T ss_pred             CCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeee------------------eeeeEEEccCCC
Confidence            3456899999999999999997643       499999875322110000                  011223467888


Q ss_pred             cCeEEEEEcCCCCEEEEE-----------eCCCeEEEEeCCCCceeEEe---------ecCCcCeeEEEEcCCCCEEEEE
Q 005277          422 GPVYSASFSPLGDFILSS-----------SADTTIRLWSTKLNANLVCY---------KGHNYPVWDVQFNPQGHYFASS  481 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~-----------s~Dg~I~lwd~~~~~~~~~~---------~~h~~~V~~v~~sp~~~~l~sg  481 (704)
                      ..|.+++++  ++.+++|           +.|+++++|++........+         ..+...+.+++|+|||++++++
T Consensus        74 ~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~a  151 (365)
T 4h5i_A           74 DSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIA  151 (365)
T ss_dssp             CCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEE
T ss_pred             CceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEE
Confidence            899888876  5566655           45788999998765432211         1244568899999999998765


Q ss_pred             e--CCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE--eecCCCCEEEEEEec
Q 005277          482 S--HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI--FIGHRSMILSLAMSP  557 (704)
Q Consensus       482 s--~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~--~~~h~~~i~~l~~sp  557 (704)
                      +  .|++|++||+.+++++..+. |...|.+++|+|+|+++++++. +.+++|+..++..+..  ..+|...|.+++|+|
T Consensus       152 s~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp  229 (365)
T 4h5i_A          152 SSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIA  229 (365)
T ss_dssp             ESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE
T ss_pred             ECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcC
Confidence            4  78999999999999888876 7788999999999999999984 5677777777776543  346888999999999


Q ss_pred             CCCEEEEEeCCC----eEEEEeCCCCee----eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeec
Q 005277          558 DGRYMASGDEDG----TIMMWDLASGRC----VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFG  629 (704)
Q Consensus       558 dg~~l~sg~~dg----~I~iwdl~~~~~----~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (704)
                      +|+++++++.|+    .+++||+..+..    ...+.+|...|++++|                                
T Consensus       230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--------------------------------  277 (365)
T 4h5i_A          230 DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDV--------------------------------  277 (365)
T ss_dssp             TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEE--------------------------------
T ss_pred             CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEE--------------------------------
Confidence            999999999887    688999877643    3466789999999999                                


Q ss_pred             ccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccc-cCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          630 CASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT-LPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       630 ~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                        +|+|++||+|+.||+|+|||+.+++.               +.. +.+|..+|++|+|||||++||+|+.|+|
T Consensus       278 --Spdg~~lasgs~D~~V~iwd~~~~~~---------------~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t  335 (365)
T 4h5i_A          278 --DMKGELAVLASNDNSIALVKLKDLSM---------------SKIFKQAHSFAITEVTISPDSTYVASVSAANT  335 (365)
T ss_dssp             --CTTSCEEEEEETTSCEEEEETTTTEE---------------EEEETTSSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             --CCCCCceEEEcCCCEEEEEECCCCcE---------------EEEecCcccCCEEEEEECCCCCEEEEEeCCCe
Confidence              99999999999999999999988653               333 4679999999999999999999999986

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.2e-34  Score=304.38  Aligned_cols=244  Identities=24%  Similarity=0.334  Sum_probs=205.3

Q ss_pred             eeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEE
Q 005277          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW  490 (704)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lw  490 (704)
                      ..+.+|.++|++++|+|++++|++|+.|++|++||+.++.  .+..+.+|..+|++++|+|  ++.+|++|+.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3456899999999999999999999999999999998775  4677899999999999986  48999999999999999


Q ss_pred             ECCCC--ceeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCcE---EEEeecCCCCEEEEEEecC-----
Q 005277          491 SMDRI--QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMILSLAMSPD-----  558 (704)
Q Consensus       491 d~~~~--~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~---~~~~~~h~~~i~~l~~spd-----  558 (704)
                      |++++  .....+.+|...|.+++|+|+  +.+|++|+.|++|++||++++..   ...+.+|...|.+++|+|+     
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence            99876  356677899999999999998  88999999999999999987632   3455689999999999997     


Q ss_pred             ------------CCEEEEEeCCCeEEEEeCCCC---eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeee
Q 005277          559 ------------GRYMASGDEDGTIMMWDLASG---RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL  623 (704)
Q Consensus       559 ------------g~~l~sg~~dg~I~iwdl~~~---~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (704)
                                  +++|++|+.|+.|++||++.+   +.+..+.+|...|.+++|                          
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~--------------------------  220 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW--------------------------  220 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEEC--------------------------
T ss_pred             ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEe--------------------------
Confidence                        478999999999999999765   467788999999999999                          


Q ss_pred             eEEeecccCCCC----CEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          624 TIIYFGCASCEG----SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       624 ~~~~~~~~s~~g----~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                              +|++    .+|++|+.||+|+||++.+.....           .....+..|..+|.+++|+|++.+||+|+
T Consensus       221 --------sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~-----------~~~~~~~~~~~~v~~v~~sp~g~~las~~  281 (316)
T 3bg1_A          221 --------APSIGLPTSTIASCSQDGRVFIWTCDDASSNT-----------WSPKLLHKFNDVVWHVSWSITANILAVSG  281 (316)
T ss_dssp             --------CCCSSCSCCEEEEEETTCEEEEEECSSTTCCC-----------CBCCEEEECSSCEEEEEECTTTCCEEEEE
T ss_pred             --------cCCCCCCCceEEEEcCCCeEEEEEccCccccc-----------hhhhhhhcCCCcEEEEEEcCCCCEEEEEc
Confidence                    8876    899999999999999997632100           01122345678999999999999999999


Q ss_pred             cCCC
Q 005277          700 LSKT  703 (704)
Q Consensus       700 ~dgt  703 (704)
                      .||+
T Consensus       282 ~D~~  285 (316)
T 3bg1_A          282 GDNK  285 (316)
T ss_dssp             SSSC
T ss_pred             CCCe
Confidence            9985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.2e-33  Score=305.57  Aligned_cols=271  Identities=22%  Similarity=0.380  Sum_probs=233.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (704)
                      .+++++||++ ++||+|. |++|+|||+.+..                          ......+.+|...|++++|+|+
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~--------------------------~~~~~~~~~~~~~V~sv~fspd  158 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGD--------------------------ILQLLQMEQPGEYISSVAWIKE  158 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCC--------------------------EEEEEECCSTTCCEEEEEECTT
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCC--------------------------EEEEEEecCCCCcEEEEEECCC
Confidence            3688999986 5888886 9999999987621                          1222345678899999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEeccCCCCeeEE
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCV  511 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~~~~~V~~v  511 (704)
                      |++|++|+.||+|++||+.+++.+..+.+|...+.+++|+  +.++++|+.|+.+++||.... ..+..+.+|...+.++
T Consensus       159 g~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~  236 (420)
T 4gga_A          159 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL  236 (420)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred             CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeee
Confidence            9999999999999999999999999999999999988874  789999999999999999864 4567788999999999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCCc----EEEEeecCCCCEEEEEEecCCC-EEEE--EeCCCeEEEEeCCCCeeeee
Q 005277          512 RWHINCNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDGR-YMAS--GDEDGTIMMWDLASGRCVTP  584 (704)
Q Consensus       512 ~~~p~~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~i~~l~~spdg~-~l~s--g~~dg~I~iwdl~~~~~~~~  584 (704)
                      .|+|+++++++++.|+.|++||..+++    .+.....|...|.+++|+|++. .+++  |+.|+.|++||+.+++++..
T Consensus       237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~  316 (420)
T 4gga_A          237 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA  316 (420)
T ss_dssp             EECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred             eecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence            999999999999999999999998765    3566778999999999999654 5554  45799999999999999988


Q ss_pred             ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe--CCCcEEEEeCCCCccccccc
Q 005277          585 LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS--ADCTVKLWDVTTSTKVLKTE  662 (704)
Q Consensus       585 ~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs--~Dg~V~iWd~~~~~~~~~~~  662 (704)
                      +..|. .+.++.|                                  +++++.+++++  .||.|+|||+.++..     
T Consensus       317 ~~~~~-~v~~~~~----------------------------------~~~~~~lv~~sg~~d~~I~iwd~~~~~~-----  356 (420)
T 4gga_A          317 VDAHS-QVCSILW----------------------------------SPHYKELISGHGFAQNQLVIWKYPTMAK-----  356 (420)
T ss_dssp             EECSS-CEEEEEE----------------------------------ETTTTEEEEEECTTTCCEEEEETTTCCE-----
T ss_pred             ecccc-ceeeeee----------------------------------cCCCCeEEEEEecCCCEEEEEECCCCcE-----
Confidence            87654 5677778                                  88888887765  799999999988643     


Q ss_pred             cccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       663 ~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                +..+.+|..+|.+|+|+|+|.+||+|+.|++
T Consensus       357 ----------v~~l~gH~~~V~~l~~spdg~~l~S~s~D~t  387 (420)
T 4gga_A          357 ----------VAELKGHTSRVLSLTMSPDGATVASAAADET  387 (420)
T ss_dssp             ----------EEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred             ----------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence                      5677889999999999999999999999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.2e-34  Score=305.10  Aligned_cols=261  Identities=22%  Similarity=0.406  Sum_probs=223.5

Q ss_pred             CeEeecCCCCC-CeEEEE-E--eeCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCc
Q 005277          330 NRVHLSSAALP-SVSFYT-F--INTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPR  401 (704)
Q Consensus       330 ~~~~l~~~~~p-~~~~~~-~--~~~~~~V~~~~fs~d----g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~  401 (704)
                      ..+.+|+.... ....+. +  ..|...|++++|+|+    +.+|++|+.||.|++||+.+                   
T Consensus        44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~-------------------  104 (366)
T 3k26_A           44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT-------------------  104 (366)
T ss_dssp             TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT-------------------
T ss_pred             CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh-------------------
Confidence            35777765432 222222 1  226688999999999    67999999999999999875                   


Q ss_pred             ccccCCCCCccceeeccCCccCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEe---ecCCcCeeEEEEcCCCCE
Q 005277          402 EDIIGPNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHY  477 (704)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~v~~sp~~~~  477 (704)
                               ......+.+|..+|.+++|+| ++.+|++|+.||+|++||+.+++.+..+   .+|...|.+++|+|++.+
T Consensus       105 ---------~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  175 (366)
T 3k26_A          105 ---------MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK  175 (366)
T ss_dssp             ---------CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSE
T ss_pred             ---------ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCE
Confidence                     234556778999999999999 8999999999999999999999988888   689999999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCceeEEec----------------------------cCCCCeeEEEEcCCCCEEEEEECCCcE
Q 005277          478 FASSSHDRTARIWSMDRIQPLRIMA----------------------------GHLSDVDCVRWHINCNYIATGSSDKTV  529 (704)
Q Consensus       478 l~sgs~dg~i~lwd~~~~~~~~~~~----------------------------~~~~~V~~v~~~p~~~~l~tgs~dg~I  529 (704)
                      |++++.||.|++||+++++....+.                            +|...|.+++|+  +++|++++.||.|
T Consensus       176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i  253 (366)
T 3k26_A          176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAI  253 (366)
T ss_dssp             EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEE
T ss_pred             EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEE
Confidence            9999999999999998765443333                            399999999998  7799999999999


Q ss_pred             EEEeCCCCcE--------------EEEeecCCCCEEEEEEecC--CCEEEEEeCCCeEEEEeCCCCeee----eeecCC-
Q 005277          530 RLWDVSSGEC--------------VRIFIGHRSMILSLAMSPD--GRYMASGDEDGTIMMWDLASGRCV----TPLMGH-  588 (704)
Q Consensus       530 ~iwd~~~~~~--------------~~~~~~h~~~i~~l~~spd--g~~l~sg~~dg~I~iwdl~~~~~~----~~~~~h-  588 (704)
                      ++||++++..              +..+.+|...|.+++|+|+  |++|++|+.||.|++||+.+++..    ..+.+| 
T Consensus       254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  333 (366)
T 3k26_A          254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK  333 (366)
T ss_dssp             EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred             EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence            9999987744              7788899999999999999  999999999999999999988643    367777 


Q ss_pred             -CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          589 -TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       589 -~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                       ...|.++.|                                  +|++++|++|+.||.|++||+.+
T Consensus       334 ~~~~v~~~~~----------------------------------s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          334 CGAAIRQTSF----------------------------------SRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CCSCEEEEEE----------------------------------CTTSSEEEEEETTSEEEEEEC--
T ss_pred             cCCceEEEEe----------------------------------CCCCCeEEEEeCCCEEEEEEecC
Confidence             799999999                                  99999999999999999999853

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.9e-33  Score=324.99  Aligned_cols=262  Identities=27%  Similarity=0.428  Sum_probs=223.2

Q ss_pred             cCeEeecCCCCC----CeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccc
Q 005277          329 RNRVHLSSAALP----SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (704)
Q Consensus       329 ~~~~~l~~~~~p----~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (704)
                      ...+++|.....    ..+...+.+|...|+|++|+|++++|++|+.||.|+|||+..                      
T Consensus       404 D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~----------------------  461 (694)
T 3dm0_A          404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA----------------------  461 (694)
T ss_dssp             TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------
T ss_pred             CCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC----------------------
Confidence            357788865332    345567889999999999999999999999999999999875                      


Q ss_pred             cCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe---ecCCcCeeEEEEcCCC--CEEE
Q 005277          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQG--HYFA  479 (704)
Q Consensus       405 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~v~~sp~~--~~l~  479 (704)
                            ......+.+|.+.|.+++|+|++++|++|+.|++|++||+.........   .+|...|.+++|+|++  ..++
T Consensus       462 ------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  535 (694)
T 3dm0_A          462 ------GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV  535 (694)
T ss_dssp             ------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred             ------CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence                  2345667899999999999999999999999999999998754333322   4688899999999986  6899


Q ss_pred             EEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC
Q 005277          480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG  559 (704)
Q Consensus       480 sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg  559 (704)
                      +|+.|++|++||+++.+....+.+|...|.+++|+|++++|++|+.||+|++||+++++++..+. +...|.+++|+|++
T Consensus       536 s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~  614 (694)
T 3dm0_A          536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNR  614 (694)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSS
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999888775 45679999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCeeeeeecCCCc-------------------eeeeeeeeeeehccccccccccccccceee
Q 005277          560 RYMASGDEDGTIMMWDLASGRCVTPLMGHTS-------------------CVWTLAYRFLLLVTNAYLKISDKVSTGFLF  620 (704)
Q Consensus       560 ~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~-------------------~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~  620 (704)
                      .+|++++ ++.|++||+.+++.+..+..+..                   .++++.|                       
T Consensus       615 ~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------------------  670 (694)
T 3dm0_A          615 YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW-----------------------  670 (694)
T ss_dssp             SEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEE-----------------------
T ss_pred             cEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEE-----------------------
Confidence            9888776 55699999999998887754422                   1344444                       


Q ss_pred             eeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       621 ~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                                 +|+|++|++|+.||+|+||++..
T Consensus       671 -----------spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          671 -----------SADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             -----------CTTSSEEEEEETTSEEEEEEC--
T ss_pred             -----------cCCCCEEEEEcCCCeEEEEeccC
Confidence                       99999999999999999999853

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.9e-34  Score=300.50  Aligned_cols=266  Identities=14%  Similarity=0.251  Sum_probs=227.6

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQD---GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~d---g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (704)
                      ...+++|.............+|...|+|++|+|+   +.+|++|+.||.|++|++....                     
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------  101 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE---------------------  101 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS---------------------
T ss_pred             CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC---------------------
Confidence            3578888877666655556689999999999999   7999999999999999987521                     


Q ss_pred             CCCCCccceeeccCCccCeEEEE------EcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEeecCCc----CeeEEE----
Q 005277          406 GPNGRKRSYTLYQGHSGPVYSAS------FSPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNY----PVWDVQ----  470 (704)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~------~sp~~~~l~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~----~V~~v~----  470 (704)
                            .....+.+|.+.|.++.      |+|++++|++++.||+|++||+.++. .+..+..|..    .|+++.    
T Consensus       102 ------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  175 (357)
T 3i2n_A          102 ------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA  175 (357)
T ss_dssp             ------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred             ------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence                  13456778999999995      57899999999999999999999887 6777766654    899998    


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcC---CCCEEEEEECCCcEEEEeCCCCcEEEEee---
Q 005277          471 FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSSGECVRIFI---  544 (704)
Q Consensus       471 ~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p---~~~~l~tgs~dg~I~iwd~~~~~~~~~~~---  544 (704)
                      |+|++.++++++.||.|++||+++++.... ..|...|.+++|+|   ++++|++|+.||.|++||+++++.+..+.   
T Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  254 (357)
T 3i2n_A          176 YNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS  254 (357)
T ss_dssp             CC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEE
T ss_pred             cCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeec
Confidence            788999999999999999999999877544 56889999999999   99999999999999999998876554444   


Q ss_pred             --cCCCCEEEEEEecCCC-EEEEEeCCCeEEEEeCCCC-------------------eeeeeecCCCceeeeeeeeeeeh
Q 005277          545 --GHRSMILSLAMSPDGR-YMASGDEDGTIMMWDLASG-------------------RCVTPLMGHTSCVWTLAYRFLLL  602 (704)
Q Consensus       545 --~h~~~i~~l~~spdg~-~l~sg~~dg~I~iwdl~~~-------------------~~~~~~~~h~~~V~sl~~~~~~~  602 (704)
                        +|...|++++|+|+++ +|++|+.||.|++||++++                   +.+..+.+|...|.+++|     
T Consensus       255 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~-----  329 (357)
T 3i2n_A          255 EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW-----  329 (357)
T ss_dssp             EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE-----
T ss_pred             cCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE-----
Confidence              8999999999999998 8999999999999999754                   456778889999999999     


Q ss_pred             ccccccccccccccceeeeeeeEEeecccCCCCCEEE-EEeCCCcEEEEeCCCCc
Q 005277          603 VTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA-SGSADCTVKLWDVTTST  656 (704)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~la-sgs~Dg~V~iWd~~~~~  656 (704)
                                                   +|++.+|+ +|+.||.|+|||+.+..
T Consensus       330 -----------------------------s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          330 -----------------------------SPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             -----------------------------CSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             -----------------------------cCCCCeEEEEecCCCcEEEEECCCcc
Confidence                                         99999998 89999999999998753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-34  Score=335.79  Aligned_cols=251  Identities=22%  Similarity=0.383  Sum_probs=222.2

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      ++.+|.+.|+|++|+|+|++|++|+.||.|+||++...                          .......+.+|.++|+
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--------------------------~~~~~~~l~~h~~~V~   57 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW   57 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT--------------------------EEEEEEEECCCSSCEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC--------------------------CCccceeccCCcCceE
Confidence            46789999999999999999999999999999998631                          1345567889999999


Q ss_pred             EEEEcCC--CCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEEEEECCCC--ce
Q 005277          426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRI--QP  497 (704)
Q Consensus       426 ~l~~sp~--~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~lwd~~~~--~~  497 (704)
                      +++|+|+  +++|++|+.||+|++||+.++.  .+..+.+|..+|++++|+|+  +.++++|+.||.|++||+++.  ..
T Consensus        58 ~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~  137 (753)
T 3jro_A           58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS  137 (753)
T ss_dssp             EEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC
T ss_pred             EEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc
Confidence            9999988  8999999999999999999886  67788899999999999999  999999999999999999876  34


Q ss_pred             eEEeccCCCCeeEEEEcC-------------CCCEEEEEECCCcEEEEeCCCC----cEEEEeecCCCCEEEEEEecC--
Q 005277          498 LRIMAGHLSDVDCVRWHI-------------NCNYIATGSSDKTVRLWDVSSG----ECVRIFIGHRSMILSLAMSPD--  558 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p-------------~~~~l~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~i~~l~~spd--  558 (704)
                      ...+.+|...|.+++|+|             ++.++++|+.||.|++||++++    .+...+.+|...|++++|+|+  
T Consensus       138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  217 (753)
T 3jro_A          138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  217 (753)
T ss_dssp             CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC
Confidence            556678999999999999             5899999999999999999877    566778899999999999999  


Q ss_pred             -CCEEEEEeCCCeEEEEeCCCCe-----eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277          559 -GRYMASGDEDGTIMMWDLASGR-----CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS  632 (704)
Q Consensus       559 -g~~l~sg~~dg~I~iwdl~~~~-----~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  632 (704)
                       |++|++|+.||.|++||+.++.     .+.....|...|+++.|                                  +
T Consensus       218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~----------------------------------s  263 (753)
T 3jro_A          218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW----------------------------------S  263 (753)
T ss_dssp             SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEE----------------------------------C
T ss_pred             CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEE----------------------------------c
Confidence             9999999999999999999874     34444668899999999                                  9


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          633 CEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       633 ~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                      |+|.+|++|+.||.|++|++..+.
T Consensus       264 pdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          264 LSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             TTTCCEEEECSSSCEECCBCCSSS
T ss_pred             CCCCEEEEEcCCCEEEEEecCCCC
Confidence            999999999999999999998543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=6e-33  Score=289.71  Aligned_cols=295  Identities=24%  Similarity=0.424  Sum_probs=250.2

Q ss_pred             cccCcCCCCCCCCCCCCCCCCChhHHHHHHHhccCeEeecCCCCCC-eEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCc
Q 005277          296 LEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGSLVAGGFSDSS  374 (704)
Q Consensus       296 ~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~p~-~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~  374 (704)
                      ..|..+.++|...+++|+..++|+....+...+.+.+++|+..... ...+...+|...|+|++|+|++++||+|+.||.
T Consensus        11 ~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~   90 (318)
T 4ggc_A           11 SLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE   90 (318)
T ss_dssp             SSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            3466678889888899988888886654445567899999876544 334456678889999999999999999999999


Q ss_pred             EEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-
Q 005277          375 LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-  453 (704)
Q Consensus       375 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~-  453 (704)
                      |+||++.+                            ......+.+|...+.++.+.  +..+++++.++.+++|+.... 
T Consensus        91 v~iw~~~~----------------------------~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~  140 (318)
T 4ggc_A           91 VQLWDVQQ----------------------------QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE  140 (318)
T ss_dssp             EEEEETTT----------------------------TEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS
T ss_pred             EEEeecCC----------------------------ceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCc
Confidence            99999876                            34556678899988877665  678999999999999998876 


Q ss_pred             ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc----eeEEeccCCCCeeEEEEcCCCCEE---EEEECC
Q 005277          454 ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRWHINCNYI---ATGSSD  526 (704)
Q Consensus       454 ~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~----~~~~~~~~~~~V~~v~~~p~~~~l---~tgs~d  526 (704)
                      ..+..+.+|...+..+.|++++.++++++.||+|++||+++++    .......+...|.++.++|++..+   ++++.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  220 (318)
T 4ggc_A          141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  220 (318)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred             eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence            4456788999999999999999999999999999999998754    345566788899999999976533   456788


Q ss_pred             CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe--CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcc
Q 005277          527 KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVT  604 (704)
Q Consensus       527 g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~--~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~  604 (704)
                      ++|++||.+.+...... .+...+..+.|+|++..+++++  .||.|++||+.+++++..+.+|.+.|++++|       
T Consensus       221 ~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~-------  292 (318)
T 4ggc_A          221 RHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM-------  292 (318)
T ss_dssp             CEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE-------
T ss_pred             CEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE-------
Confidence            99999999988877655 5677899999999999887755  7999999999999999999999999999999       


Q ss_pred             ccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          605 NAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                                                 +|+|++|+|||.||+|+|||+...
T Consensus       293 ---------------------------spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          293 ---------------------------SPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             ---------------------------CTTSSCEEEEETTTEEEEECCSCC
T ss_pred             ---------------------------cCCCCEEEEEecCCeEEEEECCCC
Confidence                                       999999999999999999999764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.3e-33  Score=344.01  Aligned_cols=346  Identities=20%  Similarity=0.275  Sum_probs=262.8

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ...+.+|+..... +..++.+|.+.|+|++|+|+|++||+|+.||.|+|||+.+                          
T Consensus       636 d~~i~vw~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~--------------------------  688 (1249)
T 3sfz_A          636 DKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT--------------------------  688 (1249)
T ss_dssp             TSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--------------------------
T ss_pred             CCeEEEEECCCCC-EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC--------------------------
Confidence            3467777765443 4556778999999999999999999999999999999875                          


Q ss_pred             CCccceeeccCCccCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSP--LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~  486 (704)
                        ......+.+|.+.|.+++|+|  ++.++++|+.||+|++||+.++.++..+.+|..+|++++|+|++.++++|+.||+
T Consensus       689 --~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~  766 (1249)
T 3sfz_A          689 --GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT  766 (1249)
T ss_dssp             --CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred             --CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence              245566778999999999999  4558999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceeEEe-------------------------------------------------------ccCCCCeeEE
Q 005277          487 ARIWSMDRIQPLRIM-------------------------------------------------------AGHLSDVDCV  511 (704)
Q Consensus       487 i~lwd~~~~~~~~~~-------------------------------------------------------~~~~~~V~~v  511 (704)
                      |++||+.++.....+                                                       .+|...|.++
T Consensus       767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~  846 (1249)
T 3sfz_A          767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC  846 (1249)
T ss_dssp             EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred             EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence            999998765433222                                                       2677889999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee---------
Q 005277          512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV---------  582 (704)
Q Consensus       512 ~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~---------  582 (704)
                      +|+|++.++++|+.||.|++||+.++..+..+.+|...|.+++|+|+|++|++++.||.|++||+.++...         
T Consensus       847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~  926 (1249)
T 3sfz_A          847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI  926 (1249)
T ss_dssp             EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccccee
Confidence            99999999999999999999999999999999999999999999999999999999999999997532100         


Q ss_pred             --------------------eee--------cCCCceeeeeeeee-----eehccccccccccccccceee---eeeeEE
Q 005277          583 --------------------TPL--------MGHTSCVWTLAYRF-----LLLVTNAYLKISDKVSTGFLF---YSLTII  626 (704)
Q Consensus       583 --------------------~~~--------~~h~~~V~sl~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~~  626 (704)
                                          ...        ..+...+.++.|.+     .....++.+.+++........   .....+
T Consensus       927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A          927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp             EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred             eEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce
Confidence                                000        01123445554421     111122233333322211110   111123


Q ss_pred             eecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccC-------------------------ccccccccccCCCCc
Q 005277          627 YFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG-------------------------TNRLRSLKTLPTKST  681 (704)
Q Consensus       627 ~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~-------------------------~~~~~~l~~~~~~~~  681 (704)
                      ...+++|+|++|++|+.||.|++||+.++...........                         ......+..+..|..
T Consensus      1007 ~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 1086 (1249)
T 3sfz_A         1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQG 1086 (1249)
T ss_dssp             CCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSS
T ss_pred             EEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCC
Confidence            3445689999999999999999999987654322111000                         011133455667889


Q ss_pred             CeEEEEEccCCcEEEEeecCCC
Q 005277          682 PVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       682 ~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      +|.+++|+|++.+|++|+.||+
T Consensus      1087 ~v~~~~~s~d~~~l~s~s~d~~ 1108 (1249)
T 3sfz_A         1087 TVLSCAISSDATKFSSTSADKT 1108 (1249)
T ss_dssp             CCCCEEECSSSSSCEEECCSSC
T ss_pred             cEEEEEECCCCCEEEEEcCCCc
Confidence            9999999999999999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.6e-33  Score=296.15  Aligned_cols=269  Identities=17%  Similarity=0.165  Sum_probs=228.8

Q ss_pred             cCeEeecCCCCCC-eEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277          329 RNRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (704)
Q Consensus       329 ~~~~~l~~~~~p~-~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (704)
                      ...+++|+..... ....++.+|...|++++|+|++++|++|+.||.|++|++....                       
T Consensus        29 d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------------------   85 (372)
T 1k8k_C           29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT-----------------------   85 (372)
T ss_dssp             SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-----------------------
T ss_pred             CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe-----------------------
Confidence            4567777665443 2455677899999999999999999999999999999986521                       


Q ss_pred             CCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eEEeecCCcCeeEEEEcCCCCEEEEEeC
Q 005277          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNPQGHYFASSSH  483 (704)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~----~~~~~~h~~~V~~v~~sp~~~~l~sgs~  483 (704)
                         ......+.+|...|.+++|+|++++|++++.||.|++||+..+..    .....+|...|.+++|+|++.+|++|+.
T Consensus        86 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           86 ---WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             ---EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             ---eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence               112334567899999999999999999999999999999998763    2333578999999999999999999999


Q ss_pred             CCeEEEEECC------------------CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec
Q 005277          484 DRTARIWSMD------------------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG  545 (704)
Q Consensus       484 dg~i~lwd~~------------------~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~  545 (704)
                      ||.|++||++                  .++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++++..+..
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  242 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  242 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence            9999999953                  6778888889999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC--Cee--e------------------------------------eee
Q 005277          546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS--GRC--V------------------------------------TPL  585 (704)
Q Consensus       546 h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~--~~~--~------------------------------------~~~  585 (704)
                      |...|.+++|+|+|++|++| .||.|++||+.+  +..  +                                    ..+
T Consensus       243 ~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (372)
T 1k8k_C          243 ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL  321 (372)
T ss_dssp             SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred             CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence            99999999999999988887 899999999987  421  1                                    222


Q ss_pred             -cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC---CEEEEEeCCCcEEEEeCCCCcc
Q 005277          586 -MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG---SLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       586 -~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g---~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                       .+|...|++++|.                                 +++|   .+|++|+.||.|++|++.+++.
T Consensus       322 ~~~h~~~v~~~~~~---------------------------------~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          322 DSLHKNSVSQISVL---------------------------------SGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             SSSSSSCEEEEEEE---------------------------------ESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             cccccCCcceeEEe---------------------------------cCCCcceeeEEEecCCCceEEEEecChhH
Confidence             3788888888761                                 5677   9999999999999999977543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.2e-33  Score=306.86  Aligned_cols=276  Identities=17%  Similarity=0.320  Sum_probs=232.6

Q ss_pred             EEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC-
Q 005277          354 LNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP-  431 (704)
Q Consensus       354 V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-  431 (704)
                      ..+++++|+.. ++++|+.||.|+||++...+..                        ......+.+|.++|++++|+| 
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~------------------------~~~~~~~~~h~~~V~~~~~~p~   92 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV------------------------DKNVPLVCGHTAPVLDIAWCPH   92 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC------------------------CTTCCCBCCCSSCEEEEEECTT
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC------------------------CCCCceEecCCCCEEEEEeCCC
Confidence            44678888865 4445788999999998652111                        123445778999999999999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------ceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEe--
Q 005277          432 LGDFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM--  501 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~~~~~~~--  501 (704)
                      ++++|++|+.||+|++||+.++       ..+..+.+|...|++++|+|++ .+|++|+.||+|++||+++++.+..+  
T Consensus        93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  172 (402)
T 2aq5_A           93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP  172 (402)
T ss_dssp             CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred             CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence            8999999999999999999987       6688899999999999999998 79999999999999999999999998  


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-ecCCCC-EEEEEEecCCCEEEEE---eCCCeEEEEeC
Q 005277          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSM-ILSLAMSPDGRYMASG---DEDGTIMMWDL  576 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~-i~~l~~spdg~~l~sg---~~dg~I~iwdl  576 (704)
                      .+|...|.+++|+|++++|++++.||.|++||+++++.+..+ .+|.+. +.+++|+|+|++|++|   +.|+.|++||+
T Consensus       173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~  252 (402)
T 2aq5_A          173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT  252 (402)
T ss_dssp             TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred             CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence            789999999999999999999999999999999999999988 788776 8999999999999999   79999999999


Q ss_pred             CCCee-eeee-cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEE-EEeCCCcEEEEeCC
Q 005277          577 ASGRC-VTPL-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA-SGSADCTVKLWDVT  653 (704)
Q Consensus       577 ~~~~~-~~~~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~la-sgs~Dg~V~iWd~~  653 (704)
                      ++++. +... ..|...+.++.|                                  +|++.+|+ +|+.||.|++||+.
T Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~----------------------------------s~~~~~l~~~g~~dg~i~i~d~~  298 (402)
T 2aq5_A          253 KHLEEPLSLQELDTSSGVLLPFF----------------------------------DPDTNIVYLCGKGDSSIRYFEIT  298 (402)
T ss_dssp             TBCSSCSEEEECCCCSSCEEEEE----------------------------------ETTTTEEEEEETTCSCEEEEEEC
T ss_pred             ccccCCceEEeccCCCceeEEEE----------------------------------cCCCCEEEEEEcCCCeEEEEEec
Confidence            98764 3333 356778889988                                  99999986 55579999999998


Q ss_pred             CCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          654 TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                      ++....           ..+..+. +..+|.+++|+|++.++++++
T Consensus       299 ~~~~~~-----------~~l~~~~-~~~~v~~~~~sp~~~~~~s~~  332 (402)
T 2aq5_A          299 SEAPFL-----------HYLSMFS-SKESQRGMGYMPKRGLEVNKC  332 (402)
T ss_dssp             SSTTCE-----------EEEEEEC-CSSCCSEEEECCGGGSCGGGT
T ss_pred             CCCcce-----------Eeecccc-cCCcccceEEecccccceecc
Confidence            865311           1233333 568999999999998877543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.4e-32  Score=325.53  Aligned_cols=307  Identities=22%  Similarity=0.325  Sum_probs=255.0

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      ..+.+|+.... ....++..|...|++++|+|++++||+|+.||.|+||++.+                           
T Consensus        35 g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~---------------------------   86 (814)
T 3mkq_A           35 GRVEIWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT---------------------------   86 (814)
T ss_dssp             SEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT---------------------------
T ss_pred             CEEEEEECCCC-ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC---------------------------
Confidence            46788875443 34456678999999999999999999999999999999875                           


Q ss_pred             CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeE
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTA  487 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i  487 (704)
                       ......+.+|.+.|.+++|+|++++|++++.||+|++||+.++ .....+.+|..+|.+++|+| ++..+++++.||+|
T Consensus        87 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v  165 (814)
T 3mkq_A           87 -GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (814)
T ss_dssp             -CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             -CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence             2345667789999999999999999999999999999999987 66778889999999999999 88999999999999


Q ss_pred             EEEECCCCceeEEeccCC-CCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277          488 RIWSMDRIQPLRIMAGHL-SDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~-~~V~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s  564 (704)
                      ++||+.++.....+..+. ..+.+++|+|  ++.+|++|+.||.|++||+++++++..+.+|...|.+++|+|+|++|++
T Consensus       166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  245 (814)
T 3mkq_A          166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS  245 (814)
T ss_dssp             EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            999999888877776555 8999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE-EEEEeC
Q 005277          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL-LASGSA  643 (704)
Q Consensus       565 g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-lasgs~  643 (704)
                      |+.||.|++||+.+++.+..+..|...+++++|                                  +|++.. +++++.
T Consensus       246 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~----------------------------------~~~~~~~~~~~~~  291 (814)
T 3mkq_A          246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT----------------------------------HPTGRKNYIASGF  291 (814)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCSSSSEEEEEE----------------------------------CTTCGGGEEEEEE
T ss_pred             EeCCCeEEEEECCCCcEEEEeecCCCcEEEEEE----------------------------------ccCCCceEEEEEe
Confidence            999999999999999999999999999999999                                  888763 244444


Q ss_pred             CCcEEEEeCCCCcccccccccc----------------------------CccccccccccCCCCcCeEEEEEccCCcEE
Q 005277          644 DCTVKLWDVTTSTKVLKTEEKS----------------------------GTNRLRSLKTLPTKSTPVYSLQFSRRNLLF  695 (704)
Q Consensus       644 Dg~V~iWd~~~~~~~~~~~~~~----------------------------~~~~~~~l~~~~~~~~~V~~l~fs~~g~~L  695 (704)
                      ++.+.+|++.............                            ..........+..+...+.+++|+|+|+++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  371 (814)
T 3mkq_A          292 DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFV  371 (814)
T ss_dssp             TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEE
T ss_pred             CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEE
Confidence            6678888877654332221100                            000001112234455668888888888888


Q ss_pred             EEee
Q 005277          696 AAGA  699 (704)
Q Consensus       696 a~gs  699 (704)
                      ++++
T Consensus       372 a~~~  375 (814)
T 3mkq_A          372 TVVG  375 (814)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8887

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-33  Score=315.60  Aligned_cols=309  Identities=7%  Similarity=0.015  Sum_probs=225.7

Q ss_pred             ccCeEeecCCCCCCe---EEEEEeeCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCC
Q 005277          328 LRNRVHLSSAALPSV---SFYTFINTHNGLNCASISQD------GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDT  398 (704)
Q Consensus       328 ~~~~~~l~~~~~p~~---~~~~~~~~~~~V~~~~fs~d------g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~  398 (704)
                      ....+++|.......   ...++..|.+.|.+++|+|+      +.+||+|+.||+|+||++..........        
T Consensus       181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~--------  252 (524)
T 2j04_B          181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF--------  252 (524)
T ss_dssp             -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE--------
T ss_pred             CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc--------
Confidence            455788887543322   12455677889999999997      5799999999999999987532110000        


Q ss_pred             CCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEeecCCcCeeEE--EEcCCC
Q 005277          399 TPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDV--QFNPQG  475 (704)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~v--~~sp~~  475 (704)
                            .   ........+.+|.+.|++++|++++ .|++|+.||+|++||+.++. ....+.+|..+|++|  .|+|++
T Consensus       253 ------~---~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g  322 (524)
T 2j04_B          253 ------K---MCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE  322 (524)
T ss_dssp             ------E---CCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS
T ss_pred             ------e---eecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC
Confidence                  0   0011234577899999999999864 89999999999999999764 456688999999999  578887


Q ss_pred             -CEEEEEeCCCeEEEEECCCCceeEEeccCCC--CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEE
Q 005277          476 -HYFASSSHDRTARIWSMDRIQPLRIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILS  552 (704)
Q Consensus       476 -~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~--~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~  552 (704)
                       .+|++|+.|++|+|||+++++++..+.+|..  .|.+++|+|+++.+++++.|++|++||++++.++..+.+|.+.|++
T Consensus       323 ~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~s  402 (524)
T 2j04_B          323 DTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITA  402 (524)
T ss_dssp             CCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEE
T ss_pred             CeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEE
Confidence             8999999999999999998887777777653  5889999999999999999999999999999998889999999999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC-----CCceeeeeeeeeeeh--cccccccccccccccee----ee
Q 005277          553 LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG-----HTSCVWTLAYRFLLL--VTNAYLKISDKVSTGFL----FY  621 (704)
Q Consensus       553 l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~-----h~~~V~sl~~~~~~~--~~~~~~~~~~~~~~~~~----~~  621 (704)
                      ++|+|+|++|++|+.||+|++||+..+ .+.....     +...+++++|.....  .......++.....+..    ..
T Consensus       403 va~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~g  481 (524)
T 2j04_B          403 IGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDA  481 (524)
T ss_dssp             EECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------
T ss_pred             EEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecC
Confidence            999999999999999999999998653 2222111     112466676642110  00000111100001111    11


Q ss_pred             eeeEEeecccCCCC---CEEEEEeCCCcEEEEeCCCC
Q 005277          622 SLTIIYFGCASCEG---SLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       622 ~~~~~~~~~~s~~g---~~lasgs~Dg~V~iWd~~~~  655 (704)
                      ....+...+++|++   .++|+|+.||.|+||++...
T Consensus       482 h~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          482 HGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             CCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence            12234455678885   49999999999999998753

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.4e-32  Score=314.07  Aligned_cols=271  Identities=15%  Similarity=0.180  Sum_probs=231.3

Q ss_pred             cCeEeecCCCCC---CeEEEEEeeCCCC-EEEEEEcC--CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcc
Q 005277          329 RNRVHLSSAALP---SVSFYTFINTHNG-LNCASISQ--DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE  402 (704)
Q Consensus       329 ~~~~~l~~~~~p---~~~~~~~~~~~~~-V~~~~fs~--dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~  402 (704)
                      ...+.+|....+   ......+.+|... |+|++|+|  ++++||+|+.||.|+||++........              
T Consensus        38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~--------------  103 (615)
T 1pgu_A           38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS--------------  103 (615)
T ss_dssp             TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE--------------
T ss_pred             CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccc--------------
Confidence            456778876533   1455677889999 99999999  999999999999999999864210000              


Q ss_pred             cccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC-E
Q 005277          403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-Y  477 (704)
Q Consensus       403 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D----g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-~  477 (704)
                            ........+.+|..+|.+++|+|++++|++++.+    +.|++||  .++.+..+.+|...|++++|+|++. .
T Consensus       104 ------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~  175 (615)
T 1pgu_A          104 ------VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMR  175 (615)
T ss_dssp             ------EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCE
T ss_pred             ------ccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcE
Confidence                  0123455677899999999999999999999988    7888888  5778888999999999999999998 8


Q ss_pred             EEEEeCCCeEEEEECCCCceeEEeccCCC---CeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEe-e---cCCCC
Q 005277          478 FASSSHDRTARIWSMDRIQPLRIMAGHLS---DVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIF-I---GHRSM  549 (704)
Q Consensus       478 l~sgs~dg~i~lwd~~~~~~~~~~~~~~~---~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~-~---~h~~~  549 (704)
                      +++++.|+.|++||+.+++.+..+.+|..   .|.+++|+|+ +++|++++.||.|++||+++++.+..+ .   +|...
T Consensus       176 l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  255 (615)
T 1pgu_A          176 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG  255 (615)
T ss_dssp             EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred             EEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCc
Confidence            99999999999999999999999999999   9999999999 999999999999999999999999998 6   89999


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCC----ceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277          550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT----SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI  625 (704)
Q Consensus       550 i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~----~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (704)
                      |.+++|+ ++++|++++.||.|++||+.+++.+..+..+.    ..+.++.|                            
T Consensus       256 v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------  306 (615)
T 1pgu_A          256 IFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA----------------------------  306 (615)
T ss_dssp             EEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE----------------------------
T ss_pred             eEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe----------------------------
Confidence            9999999 99999999999999999999999998887763    45556555                            


Q ss_pred             EeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          626 IYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       626 ~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                            + ++.++++|+.||.|++||+.++..
T Consensus       307 ------~-~~~~l~~~~~~g~i~~~d~~~~~~  331 (615)
T 1pgu_A          307 ------T-GNGRIISLSLDGTLNFYELGHDEV  331 (615)
T ss_dssp             ------E-ETTEEEEEETTSCEEEEETTEEEE
T ss_pred             ------C-CCCeEEEEECCCCEEEEECCCCcE
Confidence                  3 677888888888888888776443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.4e-32  Score=284.00  Aligned_cols=270  Identities=21%  Similarity=0.367  Sum_probs=227.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (704)
                      +++++||+++ +||+|. |++|+|||+.+..                          ......+.+|...|++++|+|++
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~--------------------------~~~~~~~~~~~~~V~~v~~~~~~   79 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGD--------------------------ILQLLQMEQPGEYISSVAWIKEG   79 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCC--------------------------EEEEEECCSTTCCEEEEEECTTS
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCC--------------------------EEEEEEecCCCCeEEEEEECCCC
Confidence            5789999986 788875 9999999987621                          11223456788999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEeccCCCCeeEEE
Q 005277          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCVR  512 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~~~~~V~~v~  512 (704)
                      ++|++|+.||+|++|++.+++.+..+.+|...+.++.+  ++..+++|+.++.+++|+.... ..+..+.+|...+.++.
T Consensus        80 ~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (318)
T 4ggc_A           80 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR  157 (318)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             CEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEE
Confidence            99999999999999999999999999999988877655  5789999999999999999865 45677889999999999


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCcE----EEEeecCCCCEEEEEEecCCCE---EEEEeCCCeEEEEeCCCCeeeeee
Q 005277          513 WHINCNYIATGSSDKTVRLWDVSSGEC----VRIFIGHRSMILSLAMSPDGRY---MASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~----~~~~~~h~~~i~~l~~spdg~~---l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                      |+++++++++++.||+|++||+++++.    ......|.+.|.+++++|++..   +++++.++.|++||..........
T Consensus       158 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~  237 (318)
T 4ggc_A          158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV  237 (318)
T ss_dssp             ECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred             EcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence            999999999999999999999987653    3455678889999999997653   346678899999999888776554


Q ss_pred             cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe--CCCcEEEEeCCCCcccccccc
Q 005277          586 MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEE  663 (704)
Q Consensus       586 ~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs--~Dg~V~iWd~~~~~~~~~~~~  663 (704)
                      . +...+..+.|                                  ++++..+++++  .||.|+|||+.+++.      
T Consensus       238 ~-~~~~v~~~~~----------------------------------~~~~~~~~~~sg~~d~~i~iwd~~~~~~------  276 (318)
T 4ggc_A          238 D-AHSQVCSILW----------------------------------SPHYKELISGHGFAQNQLVIWKYPTMAK------  276 (318)
T ss_dssp             E-CSSCEEEEEE----------------------------------ETTTTEEEEEECTTTCCEEEEETTTCCE------
T ss_pred             c-ceeeeeeeee----------------------------------cccccceEEEEEcCCCEEEEEECCCCcE------
Confidence            4 5667778888                                  78888776654  799999999988643      


Q ss_pred             ccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          664 KSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       664 ~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                               +..+.+|..+|++++|+|+|.+||+|+.||+
T Consensus       277 ---------~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~  307 (318)
T 4ggc_A          277 ---------VAELKGHTSRVLSLTMSPDGATVASAAADET  307 (318)
T ss_dssp             ---------EEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred             ---------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence                     5677889999999999999999999999985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-32  Score=329.23  Aligned_cols=309  Identities=14%  Similarity=0.158  Sum_probs=234.3

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ...+++|+...... ..++ .|.+.|++++|+|++++|++|+.||.|++||+..........                + 
T Consensus        78 D~~v~lWd~~~~~~-~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i----------------~-  138 (902)
T 2oaj_A           78 KDTVYVLSLYSQKV-LTTV-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL----------------D-  138 (902)
T ss_dssp             TCEEEEEETTTCSE-EEEE-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE----------------C-
T ss_pred             cCeEEEEECCCCcE-EEEE-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee----------------c-
Confidence            45788888765432 2333 477899999999999999999999999999987632110000                0 


Q ss_pred             CCccce-eeccCCccCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeecC------------------CcCeeE
Q 005277          409 GRKRSY-TLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNANLVCYKGH------------------NYPVWD  468 (704)
Q Consensus       409 ~~~~~~-~~~~~h~~~V~~l~~sp~-~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h------------------~~~V~~  468 (704)
                       ..... ..+.+|.++|.+++|+|+ +..|++|+.||+| +||+++++.+..+..|                  ...|++
T Consensus       139 -~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~  216 (902)
T 2oaj_A          139 -NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ  216 (902)
T ss_dssp             -CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEE
T ss_pred             -cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEE
Confidence             00000 234689999999999996 4689999999999 9999999888888765                  477999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceeEE--ec---c-------------CCCCeeEE-------------------
Q 005277          469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRI--MA---G-------------HLSDVDCV-------------------  511 (704)
Q Consensus       469 v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~--~~---~-------------~~~~V~~v-------------------  511 (704)
                      ++|+|+|.+|++|+.||+|++||+++++++..  +.   .             |...|.++                   
T Consensus       217 v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~  296 (902)
T 2oaj_A          217 SLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS  296 (902)
T ss_dssp             EEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence            99999999999999999999999876543321  00   0             00111111                   


Q ss_pred             --------------------------------------------------------------------------------
Q 005277          512 --------------------------------------------------------------------------------  511 (704)
Q Consensus       512 --------------------------------------------------------------------------------  511 (704)
                                                                                                      
T Consensus       297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l  376 (902)
T 2oaj_A          297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI  376 (902)
T ss_dssp             STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred             CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence                                                                                            


Q ss_pred             -----------------------------------------------------------------EEcCCCCEEEEEECC
Q 005277          512 -----------------------------------------------------------------RWHINCNYIATGSSD  526 (704)
Q Consensus       512 -----------------------------------------------------------------~~~p~~~~l~tgs~d  526 (704)
                                                                                       +|+|++++|++|+.|
T Consensus       377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~D  456 (902)
T 2oaj_A          377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSN  456 (902)
T ss_dssp             EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETT
T ss_pred             EEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCC
Confidence                                                                             224556677888888


Q ss_pred             CcEEEEeCCCCcEE----EE--ee-----cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe---------------
Q 005277          527 KTVRLWDVSSGECV----RI--FI-----GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR---------------  580 (704)
Q Consensus       527 g~I~iwd~~~~~~~----~~--~~-----~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~---------------  580 (704)
                      ++|++||+.++...    ..  +.     +|...|.+++|+|+|++||+|+.||+|+|||+.+++               
T Consensus       457 gtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~  536 (902)
T 2oaj_A          457 GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEM  536 (902)
T ss_dssp             SEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------------
T ss_pred             CcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccce
Confidence            88888888766421    11  11     788899999999999999999999999999998662               


Q ss_pred             ------------------------------eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277          581 ------------------------------CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC  630 (704)
Q Consensus       581 ------------------------------~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (704)
                                                    ++..+.+|.+.|++++|                                 
T Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svaf---------------------------------  583 (902)
T 2oaj_A          537 NFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINN---------------------------------  583 (902)
T ss_dssp             -CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEE---------------------------------
T ss_pred             eeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEe---------------------------------
Confidence                                          35677889999999998                                 


Q ss_pred             cCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccC-CCCcCeEEEEEc-----cCC---cEEEEeecC
Q 005277          631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP-TKSTPVYSLQFS-----RRN---LLFAAGALS  701 (704)
Q Consensus       631 ~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~V~~l~fs-----~~g---~~La~gs~d  701 (704)
                       ||+| +||+|+.||+|+|||+.++..+..          ..+..+. +|...|++|+|+     |||   .+|++|+.|
T Consensus       584 -SpdG-~lAsgs~D~tv~lwd~~~~~~~~~----------~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D  651 (902)
T 2oaj_A          584 -SNIG-FVGIAYAAGSLMLIDRRGPAIIYM----------ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM  651 (902)
T ss_dssp             -CBTS-EEEEEETTSEEEEEETTTTEEEEE----------EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT
T ss_pred             -cCCc-EEEEEeCCCcEEEEECCCCeEEEE----------eehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecC
Confidence             9999 999999999999999877543211          0123454 889999999999     885   899999999


Q ss_pred             CC
Q 005277          702 KT  703 (704)
Q Consensus       702 gt  703 (704)
                      ++
T Consensus       652 ~t  653 (902)
T 2oaj_A          652 GE  653 (902)
T ss_dssp             SE
T ss_pred             Cc
Confidence            85

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-33  Score=295.53  Aligned_cols=247  Identities=23%  Similarity=0.341  Sum_probs=217.2

Q ss_pred             ceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEE
Q 005277          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTAR  488 (704)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~  488 (704)
                      ....+.+|.++|++++|+|++++|++|+.||+|++|++.  ++..+..+.+|..+|++++|+++  +.+|++|+.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            345677899999999999999999999999999999998  55677788999999999999987  99999999999999


Q ss_pred             EEECCCCc--eeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCc--EEEEeecCCCCEEEEEEec-----
Q 005277          489 IWSMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSP-----  557 (704)
Q Consensus       489 lwd~~~~~--~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~i~~l~~sp-----  557 (704)
                      +||+++++  .+..+..|...|.+++|+|+  +++|++++.||.|++||++++.  ....+.+|...|.+++|+|     
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence            99999887  77788889999999999999  9999999999999999999873  4456678999999999999     


Q ss_pred             --------CCCEEEEEeCCCeEEEEeCCCCe----eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277          558 --------DGRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI  625 (704)
Q Consensus       558 --------dg~~l~sg~~dg~I~iwdl~~~~----~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (704)
                              ++.+|++|+.||.|++||++++.    .+..+.+|...|.++.|                            
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~----------------------------  214 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW----------------------------  214 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE----------------------------
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE----------------------------
Confidence                    69999999999999999998764    45677899999999999                            


Q ss_pred             EeecccCCC---CCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          626 IYFGCASCE---GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       626 ~~~~~~s~~---g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                            +|+   +.+|++|+.||.|++||+.++.....          ..+.....+..+|.+++|+|++.+|++|+.||
T Consensus       215 ------sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  278 (379)
T 3jrp_A          215 ------SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK----------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDN  278 (379)
T ss_dssp             ------CCCCSSSEEEEEEETTSCEEEEEESSTTSCCE----------EEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred             ------CCCCCCCCeEEEEeCCCEEEEEeCCCCCccce----------eeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence                  999   89999999999999999988642211          12334455788999999999999999999987


Q ss_pred             C
Q 005277          703 T  703 (704)
Q Consensus       703 t  703 (704)
                      +
T Consensus       279 ~  279 (379)
T 3jrp_A          279 K  279 (379)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-32  Score=286.45  Aligned_cols=263  Identities=16%  Similarity=0.228  Sum_probs=233.8

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      ..+.+|+.... ....++..|...|.+++|+|++++|++|+.||.|++||+...                          
T Consensus        54 g~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------------------------  106 (369)
T 3zwl_B           54 SSASVWYSLNG-ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG--------------------------  106 (369)
T ss_dssp             SCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--------------------------
T ss_pred             CEEEEEeCCCc-hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------------------
Confidence            46778865443 334567789999999999999999999999999999998752                          


Q ss_pred             CccceeeccCCccCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc-----------eeEEeecCCc--CeeEEEE
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD-----TTIRLWSTKLNA-----------NLVCYKGHNY--PVWDVQF  471 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D-----g~I~lwd~~~~~-----------~~~~~~~h~~--~V~~v~~  471 (704)
                        .....+. |..+|.+++|+|+++++++++.+     |.|++||+....           ....+..|..  .+.+++|
T Consensus       107 --~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          107 --QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             --CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             --cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence              2223333 78899999999999999999999     999999998654           3445556666  8999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCC-CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCE
Q 005277          472 NPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI  550 (704)
Q Consensus       472 sp~~~~l~sgs~dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i  550 (704)
                      +|+++++++++.||.|++||+++ ...+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+. +...+
T Consensus       184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~  262 (369)
T 3zwl_B          184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPL  262 (369)
T ss_dssp             CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCE
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCc
Confidence            99999999999999999999998 78888899999999999999999999999999999999999999998886 77889


Q ss_pred             EEEEEecCCCEEEEEeCCC--------------eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcccccccccccccc
Q 005277          551 LSLAMSPDGRYMASGDEDG--------------TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVST  616 (704)
Q Consensus       551 ~~l~~spdg~~l~sg~~dg--------------~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~  616 (704)
                      .+++|+|+++++++++.++              .+++||+.+++.+..+.+|...|.++.|                   
T Consensus       263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-------------------  323 (369)
T 3zwl_B          263 NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAI-------------------  323 (369)
T ss_dssp             EEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEE-------------------
T ss_pred             eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEE-------------------
Confidence            9999999999999999988              8999999999999999999999999999                   


Q ss_pred             ceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          617 GFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       617 ~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                                     +|++++|++|+.||.|+||++..+..
T Consensus       324 ---------------s~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          324 ---------------SPQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             ---------------CTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             ---------------CCCCCEEEEEcCCCeEEEEECccccc
Confidence                           99999999999999999999987543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.1e-32  Score=296.85  Aligned_cols=261  Identities=16%  Similarity=0.189  Sum_probs=218.6

Q ss_pred             cCeEeecCCCCCCeE-EEEEeeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277          329 RNRVHLSSAALPSVS-FYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~-~~~~~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (704)
                      ...+++|+....... .+...+|...|.+++|+| ++++|++|+.||.|++||+....                      
T Consensus        95 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----------------------  152 (383)
T 3ei3_B           95 GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV----------------------  152 (383)
T ss_dssp             TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE----------------------
T ss_pred             CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc----------------------
Confidence            357788877654433 333347999999999999 78999999999999999987411                      


Q ss_pred             CCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC-EEEEEeCCC
Q 005277          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDR  485 (704)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-~l~sgs~dg  485 (704)
                          ........+|...|.+++|+|++++|++|+.||.|++||+ +++.+..+.+|...|.+++|+|++. ++++|+.|+
T Consensus       153 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  227 (383)
T 3ei3_B          153 ----IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA  227 (383)
T ss_dssp             ----EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             ----eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC
Confidence                1122223456689999999999999999999999999999 5788899999999999999999998 999999999


Q ss_pred             eEEEEECCC----CceeEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-------------
Q 005277          486 TARIWSMDR----IQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-------------  547 (704)
Q Consensus       486 ~i~lwd~~~----~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-------------  547 (704)
                      +|++||+++    ...+..+ +|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.+|.             
T Consensus       228 ~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (383)
T 3ei3_B          228 TVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT  306 (383)
T ss_dssp             EEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred             EEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence            999999987    5566666 6999999999999 99999999999999999999988776666543             


Q ss_pred             ----CCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC--CCceeeeeeeeeeehccccccccccccccceeee
Q 005277          548 ----SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFY  621 (704)
Q Consensus       548 ----~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~--h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (704)
                          +.+..++|+|+|++  +|+.||.|++||+.+++.+..+.+  |...+..++|                        
T Consensus       307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~------------------------  360 (383)
T 3ei3_B          307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF------------------------  360 (383)
T ss_dssp             ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE------------------------
T ss_pred             ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEE------------------------
Confidence                34445667777766  778999999999999999999987  4567777789                        


Q ss_pred             eeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          622 SLTIIYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       622 ~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                                +|++.+|++|+ ||.|+|||+.+
T Consensus       361 ----------s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          361 ----------SPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             ----------CTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ----------ecCccEEEEec-CCcEEEEecCC
Confidence                      99999999997 99999999875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.2e-32  Score=299.92  Aligned_cols=264  Identities=25%  Similarity=0.440  Sum_probs=227.3

Q ss_pred             CCeEEEEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc
Q 005277          340 PSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ  418 (704)
Q Consensus       340 p~~~~~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (704)
                      |.........|.+.|++++|+|+ +.+||+|+.||.|+||++........                  ..........+.
T Consensus       117 ~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------------------~~~~~~~~~~~~  178 (430)
T 2xyi_A          117 GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------------------PSGECQPDLRLR  178 (430)
T ss_dssp             -CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------------------TTCCCCCSEEEE
T ss_pred             CceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------------------ccccCCCcEEec
Confidence            34445567889999999999997 78999999999999999975211100                  111234556678


Q ss_pred             CCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce-------eEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEE
Q 005277          419 GHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARI  489 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~-------~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~l  489 (704)
                      +|.+.|++++|+|++. +|++|+.||+|++|++..+..       ...+.+|...|.+++|+| ++.+|++++.||.|++
T Consensus       179 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i  258 (430)
T 2xyi_A          179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI  258 (430)
T ss_dssp             CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEE
Confidence            9999999999999998 999999999999999987432       456778999999999999 7889999999999999


Q ss_pred             EECCCC---ceeEEeccCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEecCCC-EEE
Q 005277          490 WSMDRI---QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGR-YMA  563 (704)
Q Consensus       490 wd~~~~---~~~~~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~-~l~  563 (704)
                      ||+++.   .++..+..|...|.+++|+|++. ++++|+.||.|++||+++ +.++..+.+|...|.+++|+|+++ +|+
T Consensus       259 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~  338 (430)
T 2xyi_A          259 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA  338 (430)
T ss_dssp             EETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred             EECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE
Confidence            999986   57788889999999999999887 688999999999999998 567888999999999999999985 799


Q ss_pred             EEeCCCeEEEEeCCC--------------CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeec
Q 005277          564 SGDEDGTIMMWDLAS--------------GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFG  629 (704)
Q Consensus       564 sg~~dg~I~iwdl~~--------------~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (704)
                      +++.||.|+|||+..              ...+..+.+|...|.++.|                                
T Consensus       339 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--------------------------------  386 (430)
T 2xyi_A          339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW--------------------------------  386 (430)
T ss_dssp             EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE--------------------------------
T ss_pred             EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE--------------------------------
Confidence            999999999999987              3567778899999999999                                


Q ss_pred             ccCCCCC-EEEEEeCCCcEEEEeCCCC
Q 005277          630 CASCEGS-LLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       630 ~~s~~g~-~lasgs~Dg~V~iWd~~~~  655 (704)
                        +|++. +|++++.||.|+||++...
T Consensus       387 --~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          387 --NPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             --CSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             --CCCCCCEEEEEECCCCEEEeEcccc
Confidence              99998 8999999999999998753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.5e-31  Score=281.97  Aligned_cols=263  Identities=25%  Similarity=0.407  Sum_probs=226.4

Q ss_pred             CeEeecCCCC----CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277          330 NRVHLSSAAL----PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (704)
Q Consensus       330 ~~~~l~~~~~----p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (704)
                      ..+++|+...    ...+..++.+|...|.+++|+|++++|++|+.||.|++|+...                       
T Consensus        61 ~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~-----------------------  117 (340)
T 4aow_A           61 KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT-----------------------  117 (340)
T ss_dssp             SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------------------
T ss_pred             CeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecc-----------------------
Confidence            4678886533    2345667888999999999999999999999999999999875                       


Q ss_pred             CCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEeecCCcCeeEEEEcCCC--CEEEEEe
Q 005277          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG--HYFASSS  482 (704)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~v~~sp~~--~~l~sgs  482 (704)
                           .........+...+..+.+++++.+|++|+.|+.+++||+...... ....+|...+..++|++++  .++++++
T Consensus       118 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~  192 (340)
T 4aow_A          118 -----GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG  192 (340)
T ss_dssp             -----TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             -----cceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence                 2233445567788999999999999999999999999999865443 4456789999999999854  5789999


Q ss_pred             CCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEE
Q 005277          483 HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM  562 (704)
Q Consensus       483 ~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l  562 (704)
                      .|+.|++||+++++.+..+.+|...|.+++|+|++++|++|+.||.|++||+++++++..+..+ ..|.+++|+|++.++
T Consensus       193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~  271 (340)
T 4aow_A          193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL  271 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE
T ss_pred             CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee
Confidence            9999999999999999999999999999999999999999999999999999999999888654 679999999988655


Q ss_pred             EEEeCCCeEEEEeCCCCeeeeee---------cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277          563 ASGDEDGTIMMWDLASGRCVTPL---------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC  633 (704)
Q Consensus       563 ~sg~~dg~I~iwdl~~~~~~~~~---------~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  633 (704)
                       +++.|+.|++||++++..+..+         .+|...|++++|                                  +|
T Consensus       272 -~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----------------------------------s~  316 (340)
T 4aow_A          272 -CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW----------------------------------SA  316 (340)
T ss_dssp             -EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEE----------------------------------CT
T ss_pred             -eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEE----------------------------------CC
Confidence             5667999999999988776655         367889999999                                  99


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCc
Q 005277          634 EGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       634 ~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                      +|++|++|+.||.|+|||+.+|+
T Consensus       317 dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          317 DGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             TSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCEEEEEeCCCEEEEEeCCCcC
Confidence            99999999999999999998875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-32  Score=301.20  Aligned_cols=301  Identities=13%  Similarity=0.090  Sum_probs=227.7

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCC---ccccccccCC-----CC--CCCCcccccC--C------------
Q 005277          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLG---QQAVSSGLQG-----EN--DTTPREDIIG--P------------  407 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~---~~~~~~~~~~-----~~--~~~~~~~~~~--~------------  407 (704)
                      .++.|++|++||++|+++ .++.|++||+.+..   ..........     ..  ..........  .            
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            478999999999976666 58899999987755   2111110000     00  0000000000  0            


Q ss_pred             -----CCCccceeeccCCccCeEEEEEcCCCCEE-EEEeCCCeEEEEeCC--CCceeEEee--cCCcCeeEEEEcCCCCE
Q 005277          408 -----NGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSADTTIRLWSTK--LNANLVCYK--GHNYPVWDVQFNPQGHY  477 (704)
Q Consensus       408 -----~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~Dg~I~lwd~~--~~~~~~~~~--~h~~~V~~v~~sp~~~~  477 (704)
                           ...........+|.+.|.+++|+|++++| ++|+.||+|++||+.  ++..+..+.  .|...|++++|+|++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                 00000111234678899999999999996 899999999999999  888888776  56789999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCceeE----EeccCCCCeeEEEEcCC---CCEEEEEECCCcEEEEeCCCCcEEEE-eecCCCC
Q 005277          478 FASSSHDRTARIWSMDRIQPLR----IMAGHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSM  549 (704)
Q Consensus       478 l~sgs~dg~i~lwd~~~~~~~~----~~~~~~~~V~~v~~~p~---~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~  549 (704)
                      |++|+.+|.+++|++.+.....    .+.+|...|.+++|+|+   +++|++|+.|+.|++||+++++++.. +.+|...
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~  243 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF  243 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence            9999999999999998876543    67789999999999999   99999999999999999999998877 5589999


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCC-------------------------ceeeeeeeeeeehcc
Q 005277          550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT-------------------------SCVWTLAYRFLLLVT  604 (704)
Q Consensus       550 i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~-------------------------~~V~sl~~~~~~~~~  604 (704)
                      |.+++|+ +|++|++|+.||.|++||+.+++++..+..+.                         ..|.++.|       
T Consensus       244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-------  315 (450)
T 2vdu_B          244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK-------  315 (450)
T ss_dssp             EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE-------
T ss_pred             eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE-------
Confidence            9999999 99999999999999999999999887775332                         23334444       


Q ss_pred             ccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCcEEEEeC--CCCccccccccccCccccccccccCCCCc
Q 005277          605 NAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCTVKLWDV--TTSTKVLKTEEKSGTNRLRSLKTLPTKST  681 (704)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  681 (704)
                                                 +|++++|++++ .|+.|+||++  ..+..            +..+..+..+ .
T Consensus       316 ---------------------------~~~~~~l~~~~~~d~~i~iw~~~~~~~~~------------l~~~~~~~~~-~  355 (450)
T 2vdu_B          316 ---------------------------SKNLPFVAFFVEATKCIIILEMSEKQKGD------------LALKQIITFP-Y  355 (450)
T ss_dssp             ---------------------------CSSSSEEEEEETTCSEEEEEEECSSSTTC------------EEEEEEEECS-S
T ss_pred             ---------------------------eCCCCEEEEEECCCCeEEEEEeccCCCCc------------eeeccEeccC-C
Confidence                                       89999999999 8999999999  33321            1234455555 7


Q ss_pred             CeEEEEEccCCcEEEEeecC
Q 005277          682 PVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       682 ~V~~l~fs~~g~~La~gs~d  701 (704)
                      +|.+++|+|++.++++++.+
T Consensus       356 ~v~~~~~~~~~~~v~~~~~~  375 (450)
T 2vdu_B          356 NVISLSAHNDEFQVTLDNKE  375 (450)
T ss_dssp             CEEEEEEETTEEEEEECCTT
T ss_pred             ceEEEEecCCcEEEEEeccc
Confidence            89999999977666665543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=278.77  Aligned_cols=259  Identities=22%  Similarity=0.357  Sum_probs=229.0

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      ..+++|+.... .....+..|...|.+++|+|++++|++|+.||.|++|++....                         
T Consensus        39 g~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~-------------------------   92 (313)
T 3odt_A           39 GTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS-------------------------   92 (313)
T ss_dssp             SEEEEEEESSS-EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT-------------------------
T ss_pred             CcEEEEECCCC-EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC-------------------------
Confidence            46778876433 3445677889999999999999999999999999999987521                         


Q ss_pred             CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEE
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTAR  488 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~  488 (704)
                      .......+.+|...|.+++|  ++++|++++.||.|++||  .+.....+..|..+|.++.|+| ++.++++++.||.++
T Consensus        93 ~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  168 (313)
T 3odt_A           93 GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIK  168 (313)
T ss_dssp             TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEE
T ss_pred             CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEE
Confidence            12334556789999999999  578999999999999999  6788888999999999999998 999999999999999


Q ss_pred             EEECCCCceeEEecc-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          489 IWSMDRIQPLRIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       489 lwd~~~~~~~~~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      +||  ..+....+.. |...|.+++|+|++. +++|+.||.|++||+++++.+..+.+|...|++++|+|+| .|++++.
T Consensus       169 i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~  244 (313)
T 3odt_A          169 LWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGE  244 (313)
T ss_dssp             EEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEET
T ss_pred             EEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEec
Confidence            999  4556777776 899999999999998 9999999999999999999999999999999999999999 5889999


Q ss_pred             CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcE
Q 005277          568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV  647 (704)
Q Consensus       568 dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V  647 (704)
                      ||.|++||+.+++.+..+..|...|.++.|                                  +|++. +++|+.||.|
T Consensus       245 dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~----------------------------------~~~~~-~~~~~~dg~i  289 (313)
T 3odt_A          245 DRTVRIWSKENGSLKQVITLPAISIWSVDC----------------------------------MSNGD-IIVGSSDNLV  289 (313)
T ss_dssp             TSEEEEECTTTCCEEEEEECSSSCEEEEEE----------------------------------CTTSC-EEEEETTSCE
T ss_pred             CCEEEEEECCCCceeEEEeccCceEEEEEE----------------------------------ccCCC-EEEEeCCCcE
Confidence            999999999999999999999999999999                                  99998 6679999999


Q ss_pred             EEEeCCCCcc
Q 005277          648 KLWDVTTSTK  657 (704)
Q Consensus       648 ~iWd~~~~~~  657 (704)
                      ++||+.++..
T Consensus       290 ~iw~~~~~~~  299 (313)
T 3odt_A          290 RIFSQEKSRW  299 (313)
T ss_dssp             EEEESCGGGC
T ss_pred             EEEeCCCCce
Confidence            9999987654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.1e-34  Score=305.60  Aligned_cols=239  Identities=20%  Similarity=0.261  Sum_probs=206.4

Q ss_pred             cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005277          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI  495 (704)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~  495 (704)
                      ..|.++|++++|+|++++|++|+.||+|++||+.++  ..+..+.+|..+|++++|+|++++|++|+.||+|++||+.++
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~   87 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD   87 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence            346789999999999999999999999999999988  778889999999999999999999999999999999999987


Q ss_pred             c---eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc---EEEEeec-CCCCEEEEEEecCCCEEEEEeCC
Q 005277          496 Q---PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE---CVRIFIG-HRSMILSLAMSPDGRYMASGDED  568 (704)
Q Consensus       496 ~---~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~-h~~~i~~l~~spdg~~l~sg~~d  568 (704)
                      .   +...+.+|...|.+++|+|++++|++|+.|+.|++||+++++   ....+.+ |...|.+++|+|++++|++|+.|
T Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d  167 (377)
T 3dwl_C           88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD  167 (377)
T ss_dssp             -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred             CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence            6   677788899999999999999999999999999999999887   4677777 99999999999999999999999


Q ss_pred             CeEEEEeCC------------------CCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277          569 GTIMMWDLA------------------SGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC  630 (704)
Q Consensus       569 g~I~iwdl~------------------~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (704)
                      |.|++||+.                  .++++..+ +|...|.++.|                                 
T Consensus       168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~---------------------------------  213 (377)
T 3dwl_C          168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGF---------------------------------  213 (377)
T ss_dssp             SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEE---------------------------------
T ss_pred             CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEE---------------------------------
Confidence            999999985                  35566667 89999999999                                 


Q ss_pred             cCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       631 ~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                       +|++++|++|+.||.|++||+.++...           ...+..+..|..+|.+++|+|+|.+|++|+.++
T Consensus       214 -sp~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  273 (377)
T 3dwl_C          214 -SPSGNALAYAGHDSSVTIAYPSAPEQP-----------PRALITVKLSQLPLRSLLWANESAIVAAGYNYS  273 (377)
T ss_dssp             -CTTSSCEEEEETTTEEC-CEECSTTSC-----------EEECCCEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred             -CCCCCEEEEEeCCCcEEEEECCCCCCc-----------ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence             999999999999999999999886531           122567778899999999999999999998765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.9e-32  Score=286.79  Aligned_cols=255  Identities=18%  Similarity=0.298  Sum_probs=217.4

Q ss_pred             eeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEE
Q 005277          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTAR  488 (704)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~  488 (704)
                      ..+.+|.++|++++|+|++++|++|+.||+|++||+.++    .....+.+|..+|++++|+|  ++.+|++|+.||+|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            456799999999999999999999999999999999876    35667789999999999999  699999999999999


Q ss_pred             EEECCCC---------ceeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCcEEEEee-------------
Q 005277          489 IWSMDRI---------QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFI-------------  544 (704)
Q Consensus       489 lwd~~~~---------~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~-------------  544 (704)
                      +||++.+         +++..+.+|...|.+++|+|+  +++|++++.||.|++||+++++.+..+.             
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999876         557788899999999999999  9999999999999999999887554332             


Q ss_pred             cCCCCEEEEEEecC---CCEEEEEeCCCeEEEEeCCCCee--eeeecCCCceeeeeeeeeeehcccccccccccccccee
Q 005277          545 GHRSMILSLAMSPD---GRYMASGDEDGTIMMWDLASGRC--VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFL  619 (704)
Q Consensus       545 ~h~~~i~~l~~spd---g~~l~sg~~dg~I~iwdl~~~~~--~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~  619 (704)
                      +|...+.+++|+|+   +.++++++.|+.+.+|+...++.  +..+.+|...|.++.|                      
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~----------------------  222 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW----------------------  222 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE----------------------
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEE----------------------
Confidence            67889999999997   99999999999999888887765  7778899999999999                      


Q ss_pred             eeeeeEEeecccCCCC----CEEEEEeCCCcEEEEeCCCCccccccccc-------------------------------
Q 005277          620 FYSLTIIYFGCASCEG----SLLASGSADCTVKLWDVTTSTKVLKTEEK-------------------------------  664 (704)
Q Consensus       620 ~~~~~~~~~~~~s~~g----~~lasgs~Dg~V~iWd~~~~~~~~~~~~~-------------------------------  664 (704)
                                  +|++    .+|++|+.||.|++||+..+.........                               
T Consensus       223 ------------~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
T 3f3f_A          223 ------------APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAEL  290 (351)
T ss_dssp             ------------CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------
T ss_pred             ------------CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeee
Confidence                        9998    89999999999999999875332211000                               


Q ss_pred             cCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          665 SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       665 ~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ........+..+..|..+|++++|+|++.+|++|+.||+
T Consensus       291 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~  329 (351)
T 3f3f_A          291 QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGK  329 (351)
T ss_dssp             CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSC
T ss_pred             cccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCc
Confidence            001122456677889999999999999999999999985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.9e-32  Score=291.34  Aligned_cols=254  Identities=12%  Similarity=0.108  Sum_probs=202.7

Q ss_pred             EEEeeCCCCEEEEEEcCCCCEEEEEe-----------CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccc
Q 005277          345 YTFINTHNGLNCASISQDGSLVAGGF-----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRS  413 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg~~lasg~-----------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (704)
                      +++..|...|.|++++  ++.+++|.           .|+.+++|++...........                   ...
T Consensus        67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-------------------~~~  125 (365)
T 4h5i_A           67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLT-------------------SVD  125 (365)
T ss_dssp             EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEE-------------------EEC
T ss_pred             EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEee-------------------eec
Confidence            3456677788888764  45666654           467899999865321110000                   000


Q ss_pred             eeeccCCccCeEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277          414 YTLYQGHSGPVYSASFSPLGDFILSS--SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (704)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~~~~l~s~--s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd  491 (704)
                      ......+...+.+++|+|||++++++  +.|++|+|||+.+++.+..+. |...|++++|+|+|+++++++.+ .+++|+
T Consensus       126 ~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~  203 (365)
T 4h5i_A          126 FDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVIS  203 (365)
T ss_dssp             SSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEE
T ss_pred             eeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEE
Confidence            11122345668999999999998754  478999999999999988886 77889999999999999999854 566777


Q ss_pred             CCCCceeEE--eccCCCCeeEEEEcCCCCEEEEEECCC----cEEEEeCCCCcE----EEEeecCCCCEEEEEEecCCCE
Q 005277          492 MDRIQPLRI--MAGHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGEC----VRIFIGHRSMILSLAMSPDGRY  561 (704)
Q Consensus       492 ~~~~~~~~~--~~~~~~~V~~v~~~p~~~~l~tgs~dg----~I~iwd~~~~~~----~~~~~~h~~~i~~l~~spdg~~  561 (704)
                      ..++..+..  ..+|...|.+++|+|+++++++++.|+    .+++||+..+..    ...+.+|...|++++|+|+|++
T Consensus       204 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~  283 (365)
T 4h5i_A          204 TVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL  283 (365)
T ss_dssp             TTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE
T ss_pred             eccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc
Confidence            666665533  346888899999999999999999887    688999877654    3456789999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCeeeeee-cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE
Q 005277          562 MASGDEDGTIMMWDLASGRCVTPL-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS  640 (704)
Q Consensus       562 l~sg~~dg~I~iwdl~~~~~~~~~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las  640 (704)
                      ||+|+.||.|+|||+.+++++..+ .+|...|++++|                                  +|+|++|||
T Consensus       284 lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f----------------------------------Spdg~~laS  329 (365)
T 4h5i_A          284 AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI----------------------------------SPDSTYVAS  329 (365)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE----------------------------------CTTSCEEEE
T ss_pred             eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE----------------------------------CCCCCEEEE
Confidence            999999999999999999999875 789999999999                                  999999999


Q ss_pred             EeCCCcEEEEeCCCC
Q 005277          641 GSADCTVKLWDVTTS  655 (704)
Q Consensus       641 gs~Dg~V~iWd~~~~  655 (704)
                      ||.|++|+||++...
T Consensus       330 ~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          330 VSAANTIHIIKLPLN  344 (365)
T ss_dssp             EETTSEEEEEECCTT
T ss_pred             EeCCCeEEEEEcCCC
Confidence            999999999999754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2e-31  Score=284.74  Aligned_cols=284  Identities=12%  Similarity=0.140  Sum_probs=214.9

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      +...|.+.|+|++|+|||++||+|+.+| ++||++....                            ....  .+...+.
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~----------------------------~~~~--~~~~~~~   62 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA----------------------------HIMS--QEMRHLS   62 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE----------------------------EEEE--EECSCCC
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc----------------------------eeee--eecCCeE
Confidence            3467889999999999999999998776 7899976411                            1111  1122478


Q ss_pred             EEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEecc
Q 005277          426 SASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAG  503 (704)
Q Consensus       426 ~l~~sp~~~~l-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~  503 (704)
                      .+++.++++.+ ++++.|++|++||+.+++.+..+. |..+|.++.|+++.  ++++ .|+.|++||+.+. +.+..+..
T Consensus        63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~  138 (355)
T 3vu4_A           63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR  138 (355)
T ss_dssp             EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred             EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc
Confidence            88899988877 467888999999999999988887 66799999998764  4444 4789999999987 66555543


Q ss_pred             CCCCeeEEEEcCCCCEEEE--EECCCcEEEEeCCCCc----------------EEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277          504 HLSDVDCVRWHINCNYIAT--GSSDKTVRLWDVSSGE----------------CVRIFIGHRSMILSLAMSPDGRYMASG  565 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~t--gs~dg~I~iwd~~~~~----------------~~~~~~~h~~~i~~l~~spdg~~l~sg  565 (704)
                         +...+++++  .++++  |+.||.|++||+.++.                ++..+.+|.+.|++++|+|+|++|++|
T Consensus       139 ---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~  213 (355)
T 3vu4_A          139 ---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC  213 (355)
T ss_dssp             ---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence               445566777  56666  5789999999999875                267889999999999999999999999


Q ss_pred             eCCCe-EEEEeCCCCeeeeeec-C-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe
Q 005277          566 DEDGT-IMMWDLASGRCVTPLM-G-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS  642 (704)
Q Consensus       566 ~~dg~-I~iwdl~~~~~~~~~~-~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs  642 (704)
                      +.||+ |++||+++++++..+. + |...|.+++|                                  +|++++|++|+
T Consensus       214 s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~----------------------------------s~~~~~l~s~s  259 (355)
T 3vu4_A          214 SQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKW----------------------------------STDGSKLAVVS  259 (355)
T ss_dssp             ETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEE----------------------------------CTTSCEEEEEE
T ss_pred             eCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEE----------------------------------CCCCCEEEEEE
Confidence            99998 9999999999999998 5 9999999999                                  99999999999


Q ss_pred             CCCcEEEEeCCCCccccccccc--------cCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          643 ADCTVKLWDVTTSTKVLKTEEK--------SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       643 ~Dg~V~iWd~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      .||+|+|||+..+.......-.        .................+...++|+++|.+|++|+.||+
T Consensus       260 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~  328 (355)
T 3vu4_A          260 DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRM  328 (355)
T ss_dssp             TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTE
T ss_pred             CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCe
Confidence            9999999999875421110000        000000000111122334577999999999999998873

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.4e-31  Score=291.77  Aligned_cols=255  Identities=18%  Similarity=0.373  Sum_probs=218.1

Q ss_pred             eeeccCCccCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCC----------CceeEEeecCCcCeeEEEEcCCCC-EEEEE
Q 005277          414 YTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQGH-YFASS  481 (704)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~-~~~l~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~v~~sp~~~-~l~sg  481 (704)
                      .....+|.+.|++++|+|+ +.+|++++.||.|++|++..          ...+..+.+|...|++++|+|++. +|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            4556789999999999997 67899999999999999986          577888899999999999999988 99999


Q ss_pred             eCCCeEEEEECCCCce-------eEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC---cEEEEeecCCCCE
Q 005277          482 SHDRTARIWSMDRIQP-------LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMI  550 (704)
Q Consensus       482 s~dg~i~lwd~~~~~~-------~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~i  550 (704)
                      +.||+|++|++.....       ...+.+|...|.+++|+| ++.+|++++.||.|++||++++   +.+..+..|...|
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            9999999999987322       466778999999999999 7889999999999999999987   5777888999999


Q ss_pred             EEEEEecCCC-EEEEEeCCCeEEEEeCCC-CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277          551 LSLAMSPDGR-YMASGDEDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF  628 (704)
Q Consensus       551 ~~l~~spdg~-~l~sg~~dg~I~iwdl~~-~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (704)
                      ++++|+|++. +|++|+.||.|++||+++ +.++..+.+|...|.++.|                               
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~-------------------------------  329 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW-------------------------------  329 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEE-------------------------------
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEE-------------------------------
Confidence            9999999987 688999999999999998 5678889999999999999                               


Q ss_pred             cccCCCCC-EEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCc-EEEEeecCCC
Q 005277          629 GCASCEGS-LLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGALSKT  703 (704)
Q Consensus       629 ~~~s~~g~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~-~La~gs~dgt  703 (704)
                         +|++. +|++|+.||.|+|||+........... ........+..+.+|..+|++++|+|++. +|++++.||+
T Consensus       330 ---sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~  402 (430)
T 2xyi_A          330 ---SPHNETILASSGTDRRLHVWDLSKIGEEQSTED-AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI  402 (430)
T ss_dssp             ---CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH-HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             ---CCCCCCEEEEEeCCCcEEEEeCCCCccccCccc-cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence               99884 799999999999999987432111000 00011245667788899999999999999 9999998874

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-32  Score=300.70  Aligned_cols=254  Identities=9%  Similarity=0.105  Sum_probs=209.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      -..+|.+++|||||+++|+++.|++|+  +...                            .   ..+.+|...|++++|
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~----------------------------~---~~l~gh~~~v~~V~F   60 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKY----------------------------A---KDINCNSKNLFHVKE   60 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECC----------------------------C---SCCSSBGGGTEEEEE
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--cccc----------------------------c---ceecCCCccEEEEEE
Confidence            347899999999999999999999999  5322                            0   123589999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC--
Q 005277          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS--  506 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~--  506 (704)
                      +|+|       .++++.+|+.+   ....+. .|...|++++|+|+|.++|+++.||+|++||.+.  .+..+. |..  
T Consensus        61 sPdg-------~~~~~~~~~~~---~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~  127 (588)
T 2j04_A           61 FPLE-------FENKLDFELAQ---QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL  127 (588)
T ss_dssp             ECCC-------CCCTTTTSCCC---SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS
T ss_pred             CCCC-------CcceEEEEeCC---CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc
Confidence            9999       45555555543   222222 4588899999999999999999999999999654  666666 665  


Q ss_pred             ---CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-------EEEEe----ecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277          507 ---DVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-------CVRIF----IGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (704)
Q Consensus       507 ---~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-------~~~~~----~~h~~~i~~l~~spdg~~l~sg~~dg~I~  572 (704)
                         .|.+++|||+|++|++|+.||+|++||+.++.       .+..+    .+|.+.|.+++|+|+|  +++++.|+.|+
T Consensus       128 ~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVr  205 (588)
T 2j04_A          128 SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVF  205 (588)
T ss_dssp             TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEE
T ss_pred             ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEE
Confidence               49999999999999999999999999999886       35666    6778899999999999  88899999999


Q ss_pred             EEeCCCCee---eeee-cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEE
Q 005277          573 MWDLASGRC---VTPL-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVK  648 (704)
Q Consensus       573 iwdl~~~~~---~~~~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~  648 (704)
                      +||+.++..   ..++ .+|...|.+++|                                  +  |+.||+++ +|+|+
T Consensus       206 lWd~~~~~~~~~~~tL~~~h~~~V~svaF----------------------------------s--g~~LASa~-~~tIk  248 (588)
T 2j04_A          206 SMTVSASSHQPVSRMIQNASRRKITDLKI----------------------------------V--DYKVVLTC-PGYVH  248 (588)
T ss_dssp             EECCCSSSSCCCEEEEECCCSSCCCCEEE----------------------------------E--TTEEEEEC-SSEEE
T ss_pred             EEECCCCccccceeeecccccCcEEEEEE----------------------------------E--CCEEEEEe-CCeEE
Confidence            999988773   3456 478899999999                                  7  68999997 69999


Q ss_pred             EEeCCCCccccccccccCccccccccccCCCCcCeEEEEE--ccCCcEEEEeecCCC
Q 005277          649 LWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF--SRRNLLFAAGALSKT  703 (704)
Q Consensus       649 iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~f--s~~g~~La~gs~dgt  703 (704)
                      +||+.++...               ....+|...|+.+.|  +|++..|++++.+|+
T Consensus       249 LWd~~~~~~~---------------~~~~gh~~~V~~va~~~s~d~~~La~a~edG~  290 (588)
T 2j04_A          249 KIDLKNYSIS---------------SLKTGSLENFHIIPLNHEKESTILLMSNKTSY  290 (588)
T ss_dssp             EEETTTTEEE---------------EEECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred             EEECCCCeEE---------------EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence            9999876431               112268999999999  999999999998875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.3e-32  Score=298.96  Aligned_cols=266  Identities=17%  Similarity=0.225  Sum_probs=216.8

Q ss_pred             cCeEeecCCCCCC-eEEEEEeeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277          329 RNRVHLSSAALPS-VSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (704)
Q Consensus       329 ~~~~~l~~~~~p~-~~~~~~~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (704)
                      ...+++|+..... .+.+.+.+|.+.|+|++|+| ++.+|++|+.||+|+|||+....                      
T Consensus       141 dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~----------------------  198 (435)
T 4e54_B          141 GGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI----------------------  198 (435)
T ss_dssp             TSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE----------------------
T ss_pred             CCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc----------------------
Confidence            4578999875543 45566788999999999998 68999999999999999986521                      


Q ss_pred             CCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC-EEEEEeCCC
Q 005277          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDR  485 (704)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-~l~sgs~dg  485 (704)
                          .........+...+.+++|+|++.+|++|+.||+|++||++ ++.+..+.+|..+|++++|+|++. +|++|+.|+
T Consensus       199 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~  273 (435)
T 4e54_B          199 ----LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ  273 (435)
T ss_dssp             ----EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred             ----eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcc
Confidence                11112223345678899999999999999999999999997 567778899999999999999875 788999999


Q ss_pred             eEEEEECCCCceeEE---eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC------CEEEEEEe
Q 005277          486 TARIWSMDRIQPLRI---MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS------MILSLAMS  556 (704)
Q Consensus       486 ~i~lwd~~~~~~~~~---~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~------~i~~l~~s  556 (704)
                      +|++||+++.+....   ..+|...|.+++|+|++++|++|+.||.|++||++++.+...+..|..      .+....|+
T Consensus       274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (435)
T 4e54_B          274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH  353 (435)
T ss_dssp             BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred             eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence            999999987654433   357999999999999999999999999999999999988887766653      23456788


Q ss_pred             cCCCEEEEEe------------CCCeEEEEeCCCCeeeeeec-CCCceeeee-eeeeeehccccccccccccccceeeee
Q 005277          557 PDGRYMASGD------------EDGTIMMWDLASGRCVTPLM-GHTSCVWTL-AYRFLLLVTNAYLKISDKVSTGFLFYS  622 (704)
Q Consensus       557 pdg~~l~sg~------------~dg~I~iwdl~~~~~~~~~~-~h~~~V~sl-~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (704)
                      |++.++++++            .++.|++||..+++.+..+. +|...|.++ .|                         
T Consensus       354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~f-------------------------  408 (435)
T 4e54_B          354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEF-------------------------  408 (435)
T ss_dssp             SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEE-------------------------
T ss_pred             CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEE-------------------------
Confidence            8887777764            34579999999999988774 678888887 57                         


Q ss_pred             eeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          623 LTIIYFGCASCEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       623 ~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                               +|+|.+|++|+ |++|+||++..++
T Consensus       409 ---------spdg~~lasg~-d~~i~iW~~~~gk  432 (435)
T 4e54_B          409 ---------NPMGDTLASAM-GYHILIWSQQEAR  432 (435)
T ss_dssp             ---------CTTSSCEEEEC-SSEEEECCCC---
T ss_pred             ---------CCCCCEEEEEc-CCcEEEEECCcCe
Confidence                     99999999886 7899999998864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-32  Score=297.06  Aligned_cols=259  Identities=12%  Similarity=0.206  Sum_probs=210.4

Q ss_pred             ceeec-cCCccCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCC---Cc---eeEEeecCCcCeeEEEEcCCCCEEEEEeCC
Q 005277          413 SYTLY-QGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKL---NA---NLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (704)
Q Consensus       413 ~~~~~-~~h~~~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~---~~---~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d  484 (704)
                      ....+ .+|.++|++++|+| ++++|++|+.||+|++||+.+   +.   ....+ +|..+|++++|+|++.+|++|+.|
T Consensus        54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d  132 (437)
T 3gre_A           54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD  132 (437)
T ss_dssp             EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence            44455 88999999999999 999999999999999999876   33   23333 499999999999999999999999


Q ss_pred             CeEEEEECC---CCceeEEecc------------CCCCeeEEE--EcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec--
Q 005277          485 RTARIWSMD---RIQPLRIMAG------------HLSDVDCVR--WHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--  545 (704)
Q Consensus       485 g~i~lwd~~---~~~~~~~~~~------------~~~~V~~v~--~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--  545 (704)
                      |+|++||++   .++....+.+            +...+.++.  ++|++++|++|+.||.|++||+++++++..+.+  
T Consensus       133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  212 (437)
T 3gre_A          133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP  212 (437)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred             CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence            999999995   4444433322            455667776  558899999999999999999999999999988  


Q ss_pred             CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec-CCCceeeeeeeeeeehccccccccccccccceeeeeee
Q 005277          546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT  624 (704)
Q Consensus       546 h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~-~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (704)
                      |...|++++|+|++++|++|+.||.|++||+++++++..+. .|...|.++.|.+                         
T Consensus       213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-------------------------  267 (437)
T 3gre_A          213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ-------------------------  267 (437)
T ss_dssp             GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT-------------------------
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc-------------------------
Confidence            89999999999999999999999999999999999999886 7888999996611                         


Q ss_pred             EEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcccccc---------ccccCC--CCcCeEEEEEccCCc
Q 005277          625 IIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS---------LKTLPT--KSTPVYSLQFSRRNL  693 (704)
Q Consensus       625 ~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~---------l~~~~~--~~~~V~~l~fs~~g~  693 (704)
                           .+++++.+|++|+.||.|++||+.++.................         -..+.+  |..+|.+++|+ ++.
T Consensus       268 -----~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~  341 (437)
T 3gre_A          268 -----FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK  341 (437)
T ss_dssp             -----TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred             -----ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence                 1167888999999999999999998876544432211110000         012333  78899999999 889


Q ss_pred             EEEEeecCCC
Q 005277          694 LFAAGALSKT  703 (704)
Q Consensus       694 ~La~gs~dgt  703 (704)
                      +|++|+.||+
T Consensus       342 ~l~s~~~d~~  351 (437)
T 3gre_A          342 ILLTDEATSS  351 (437)
T ss_dssp             EEEEEGGGTE
T ss_pred             EEEecCCCCe
Confidence            9999999874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=5.2e-31  Score=289.31  Aligned_cols=254  Identities=26%  Similarity=0.562  Sum_probs=221.7

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ...+++|+..... +..++.+|...|.|++|  ++++|++|+.||.|++||+.+                          
T Consensus       152 dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~--------------------------  202 (435)
T 1p22_A          152 DNTIKIWDKNTLE-CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT--------------------------  202 (435)
T ss_dssp             SSCEEEEESSSCC-EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS--------------------------
T ss_pred             CCeEEEEeCCCCe-EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--------------------------
Confidence            3467778764433 44567789999999999  788999999999999999875                          


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee---EEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~---~~~~~h~~~V~~v~~sp~~~~l~sgs~dg  485 (704)
                        ......+.+|.+.|.+++|+  +.++++|+.||+|++||+.++...   ..+.+|...|.+++|  ++.++++|+.||
T Consensus       203 --~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg  276 (435)
T 1p22_A          203 --GEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR  276 (435)
T ss_dssp             --CCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             --CcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC
Confidence              23456677899999999997  458999999999999999988765   667889999999999  788999999999


Q ss_pred             eEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (704)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg  565 (704)
                      .|++||+++++.+..+.+|...|.++.|  +++++++|+.||.|++||+++++++..+.+|...|.+++|  ++.+|++|
T Consensus       277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg  352 (435)
T 1p22_A          277 TIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG  352 (435)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred             eEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence            9999999999999999999999999998  4689999999999999999999999999999999999999  78999999


Q ss_pred             eCCCeEEEEeCCCCe---------eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC
Q 005277          566 DEDGTIMMWDLASGR---------CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS  636 (704)
Q Consensus       566 ~~dg~I~iwdl~~~~---------~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  636 (704)
                      +.||.|++||+.++.         ++..+.+|.+.|.++.|                                    ++.
T Consensus       353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------------------------------------~~~  396 (435)
T 1p22_A          353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF------------------------------------DEF  396 (435)
T ss_dssp             ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE------------------------------------CSS
T ss_pred             eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe------------------------------------CCC
Confidence            999999999997765         78888999999999877                                    567


Q ss_pred             EEEEEeCCCcEEEEeCCCCcc
Q 005277          637 LLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       637 ~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      +|++|+.||+|++||+.+...
T Consensus       397 ~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          397 QIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             CEEECCSSSEEEEEC------
T ss_pred             EEEEEeCCCEEEEEECCCCCC
Confidence            899999999999999988654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-32  Score=285.56  Aligned_cols=232  Identities=15%  Similarity=0.101  Sum_probs=191.4

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEE
Q 005277          358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL  437 (704)
Q Consensus       358 ~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~  437 (704)
                      .+.+++.+|++|+.||.|++||+.+..                            ....+.  ...|.++.|+|+   ++
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~----------------------------~~~~~~--~~~v~~~~~~~~---~~   89 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSK----------------------------TITTIT--TPNPRTGGEHPA---II   89 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSS----------------------------CEEEEE--EECCCTTCCCCS---EE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCc----------------------------EEEEEe--cCCceeeeeCCc---eE
Confidence            445688999999999999999987622                            112221  467888889987   99


Q ss_pred             EEeCCCeEEEEeCC---------CCceeEEee-cCCcCeeEEEEcC--CCCEEEEEeCCCeEEEEECCCCceeEEec-cC
Q 005277          438 SSSADTTIRLWSTK---------LNANLVCYK-GHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMA-GH  504 (704)
Q Consensus       438 s~s~Dg~I~lwd~~---------~~~~~~~~~-~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lwd~~~~~~~~~~~-~~  504 (704)
                      +++.|++|++|+..         ++..+..+. +|..+|.+++|+|  ++.++++|+.||+|++||+++++.+.... .+
T Consensus        90 s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~  169 (343)
T 3lrv_A           90 SRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS  169 (343)
T ss_dssp             EECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS
T ss_pred             EecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC
Confidence            99999999999765         444444444 6778999999999  99999999999999999999998877664 45


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEE-EEeec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV-RIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~-~~~~~-h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~  582 (704)
                      ...|.+++|+|++.+|++|+.||.|++||+++++.+ ..+.+ |.++|++++|+|+|.+|++++ |+.|++||+++++.+
T Consensus       170 ~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~  248 (343)
T 3lrv_A          170 DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT  248 (343)
T ss_dssp             SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC
T ss_pred             CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc
Confidence            568999999999999999999999999999999987 77887 999999999999999999999 559999999998876


Q ss_pred             eeecC---CCceee--eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC-CCcEEEEeCCCCc
Q 005277          583 TPLMG---HTSCVW--TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA-DCTVKLWDVTTST  656 (704)
Q Consensus       583 ~~~~~---h~~~V~--sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~-Dg~V~iWd~~~~~  656 (704)
                      ..+..   |...+.  +++|                                  +|+|++|++|+. |+.|+||++....
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~----------------------------------~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          249 LAYPTYTIPEFKTGTVTYDI----------------------------------DDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             BSSCCCBC-----CCEEEEE----------------------------------CTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             eeecccccccccccceEEEE----------------------------------CCCCCEEEEecCCCCcEEEEEEcccc
Confidence            66554   444444  4777                                  999999999998 9999999997754


Q ss_pred             c
Q 005277          657 K  657 (704)
Q Consensus       657 ~  657 (704)
                      .
T Consensus       295 ~  295 (343)
T 3lrv_A          295 K  295 (343)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=2.5e-31  Score=288.45  Aligned_cols=254  Identities=17%  Similarity=0.256  Sum_probs=217.2

Q ss_pred             EEeeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          346 TFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      .+.+|.+.|++++|+| ++++||+|+.||.|+||++.......                     ........+.+|...|
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~---------------------~~~~~~~~~~~h~~~v  134 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL---------------------PLREPVITLEGHTKRV  134 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS---------------------CBCSCSEEEECCSSCE
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc---------------------ccCCceEEecCCCCeE
Confidence            3568999999999999 89999999999999999987632110                     0013456678999999


Q ss_pred             EEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEe--ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          425 YSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       425 ~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~--~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      .+++|+|++ .+|++|+.||+|++||+.+++.+..+  .+|...|.+++|+|++.+|++++.||.|++||+++++.+..+
T Consensus       135 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  214 (402)
T 2aq5_A          135 GIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEK  214 (402)
T ss_dssp             EEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeee
Confidence            999999998 69999999999999999999999998  789999999999999999999999999999999999999888


Q ss_pred             -ccCCCC-eeEEEEcCCCCEEEEE---ECCCcEEEEeCCCCcE-EEEee-cCCCCEEEEEEecCCCEEEE-EeCCCeEEE
Q 005277          502 -AGHLSD-VDCVRWHINCNYIATG---SSDKTVRLWDVSSGEC-VRIFI-GHRSMILSLAMSPDGRYMAS-GDEDGTIMM  573 (704)
Q Consensus       502 -~~~~~~-V~~v~~~p~~~~l~tg---s~dg~I~iwd~~~~~~-~~~~~-~h~~~i~~l~~spdg~~l~s-g~~dg~I~i  573 (704)
                       .+|.+. +.++.|+|++.+|++|   +.|+.|++||++++.. +.... .|...+.+++|+|+|++|++ |+.||.|++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i  294 (402)
T 2aq5_A          215 DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY  294 (402)
T ss_dssp             ECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred             ccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence             678776 8999999999999999   7899999999998654 33332 57788999999999999975 557999999


Q ss_pred             EeCCCCee-eeeecC--CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEE
Q 005277          574 WDLASGRC-VTPLMG--HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLW  650 (704)
Q Consensus       574 wdl~~~~~-~~~~~~--h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iW  650 (704)
                      ||+.+++. +..+..  |...|.++.|                                  +|++.++++  .++.+++|
T Consensus       295 ~d~~~~~~~~~~l~~~~~~~~v~~~~~----------------------------------sp~~~~~~s--~~~~~~~~  338 (402)
T 2aq5_A          295 FEITSEAPFLHYLSMFSSKESQRGMGY----------------------------------MPKRGLEVN--KCEIARFY  338 (402)
T ss_dssp             EEECSSTTCEEEEEEECCSSCCSEEEE----------------------------------CCGGGSCGG--GTEEEEEE
T ss_pred             EEecCCCcceEeecccccCCcccceEE----------------------------------eccccccee--cceeEEEE
Confidence            99998874 444433  5689999999                                  999988775  46799999


Q ss_pred             eCCCCc
Q 005277          651 DVTTST  656 (704)
Q Consensus       651 d~~~~~  656 (704)
                      ++.++.
T Consensus       339 ~l~~~~  344 (402)
T 2aq5_A          339 KLHERK  344 (402)
T ss_dssp             EEETTE
T ss_pred             EcCCCc
Confidence            998754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=5.7e-31  Score=285.21  Aligned_cols=258  Identities=16%  Similarity=0.120  Sum_probs=178.9

Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-----EEeecCCcCeeEEEEcC--------CCCEEEEEeC
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-----VCYKGHNYPVWDVQFNP--------QGHYFASSSH  483 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~-----~~~~~h~~~V~~v~~sp--------~~~~l~sgs~  483 (704)
                      ...|.+.+....+++++.+|++++.|++|+|||+.++...     ..+.+|...|++++|+|        ++++|++|+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~  164 (393)
T 4gq1_A           85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD  164 (393)
T ss_dssp             CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred             ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence            3445566666666777788999999999999999987653     23578999999999998        7899999999


Q ss_pred             CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEEEE--------------------
Q 005277          484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRI--------------------  542 (704)
Q Consensus       484 dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~--------------------  542 (704)
                      |++|+|||+.+..++..+.+|...|.+++|+|++ ++|++|+.||+|++||+++++....                    
T Consensus       165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL  244 (393)
T ss_dssp             TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred             CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence            9999999999888888888899999999999987 5899999999999999998764432                    


Q ss_pred             -----eecCCCCEEEEEEe-cCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcccccccccccccc
Q 005277          543 -----FIGHRSMILSLAMS-PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVST  616 (704)
Q Consensus       543 -----~~~h~~~i~~l~~s-pdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~  616 (704)
                           ..+|...+.++.|+ |+|+.|++++.|+.+++||+.+++....+..|...+..+.+..........         
T Consensus       245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------  315 (393)
T 4gq1_A          245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF---------  315 (393)
T ss_dssp             C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS---------
T ss_pred             eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc---------
Confidence                 23577788999987 799999999999999999999998888888888777776652211000000         


Q ss_pred             ceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEE
Q 005277          617 GFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA  696 (704)
Q Consensus       617 ~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La  696 (704)
                      ....   ..  ......++.++++|+.||+|+|||+.++..               +..+..+..+|.+|+|+|||++||
T Consensus       316 ~~~~---~~--~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~---------------~~~~~~~~~~V~svafspdG~~LA  375 (393)
T 4gq1_A          316 PSLL---GA--CPHPRYMDYFATAHSQHGLIQLINTYEKDS---------------NSIPIQLGMPIVDFCWHQDGSHLA  375 (393)
T ss_dssp             CCSS---CC--EECSSCTTEEEEEETTTTEEEEEETTCTTC---------------CEEEEECSSCEEEEEECTTSSEEE
T ss_pred             Ccce---eE--EEccCCCCEEEEEECCCCEEEEEECCCCcE---------------EEEecCCCCcEEEEEEcCCCCEEE
Confidence            0000   00  001133556778899999999999988753               334456778999999999999999


Q ss_pred             EeecCCC
Q 005277          697 AGALSKT  703 (704)
Q Consensus       697 ~gs~dgt  703 (704)
                      +|+.+|.
T Consensus       376 ~as~~Gv  382 (393)
T 4gq1_A          376 IATEGSV  382 (393)
T ss_dssp             EEESSEE
T ss_pred             EEeCCCe
Confidence            9998863

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.1e-31  Score=308.94  Aligned_cols=245  Identities=22%  Similarity=0.340  Sum_probs=215.0

Q ss_pred             eeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEEEE
Q 005277          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIW  490 (704)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~lw  490 (704)
                      ..+.+|.++|++++|+|++++|++|+.||+|++||+.  ++..+..+.+|..+|++++|+|+  ++++++|+.||+|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            4567999999999999999999999999999999998  45677888999999999999987  9999999999999999


Q ss_pred             ECCCCc--eeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCC--cEEEEeecCCCCEEEEEEec-------
Q 005277          491 SMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSP-------  557 (704)
Q Consensus       491 d~~~~~--~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~--~~~~~~~~h~~~i~~l~~sp-------  557 (704)
                      |+++++  .+..+.+|...|.+++|+|+  ++++++|+.||.|++||++++  .....+.+|...|.+++|+|       
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            999886  67788899999999999999  999999999999999999877  34456678999999999999       


Q ss_pred             ------CCCEEEEEeCCCeEEEEeCCCC----eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277          558 ------DGRYMASGDEDGTIMMWDLASG----RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY  627 (704)
Q Consensus       558 ------dg~~l~sg~~dg~I~iwdl~~~----~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (704)
                            ++.+|++|+.||.|++||++++    ..+..+.+|...|+++.|                              
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~------------------------------  212 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW------------------------------  212 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE------------------------------
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEe------------------------------
Confidence                  5899999999999999999887    566788899999999999                              


Q ss_pred             ecccCCC---CCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          628 FGCASCE---GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       628 ~~~~s~~---g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                          +|+   +.+|++|+.||.|++||+.++....          ...+.....+..+|++++|+|+|.+|++|+.||+
T Consensus       213 ----sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~----------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~  277 (753)
T 3jro_A          213 ----SPTVLLRSYLASVSQDRTCIIWTQDNEQGPW----------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  277 (753)
T ss_dssp             ----CCCCSSSEEEEEEESSSCEEEEEESSSSSCC----------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred             ----ccCCCCCCEEEEEecCCEEEEecCCCCCCcc----------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence                999   8999999999999999998864311          1223445568889999999999999999999884

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=6.3e-30  Score=269.87  Aligned_cols=255  Identities=15%  Similarity=0.162  Sum_probs=219.8

Q ss_pred             cCeEeecCCCCCC--eEEEEEeeCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEc-ccCCccccccccCCCCCCCCcccc
Q 005277          329 RNRVHLSSAALPS--VSFYTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDM-AKLGQQAVSSGLQGENDTTPREDI  404 (704)
Q Consensus       329 ~~~~~l~~~~~p~--~~~~~~~~~~~~V~~~~fs~dg~-~lasg~~dg~I~iwdl-~~~~~~~~~~~~~~~~~~~~~~~~  404 (704)
                      ...+++|......  ........|...|++++|+|+++ +|++|+.||.|++|++ ...                     
T Consensus        32 d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---------------------   90 (342)
T 1yfq_A           32 DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP---------------------   90 (342)
T ss_dssp             TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS---------------------
T ss_pred             CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC---------------------
Confidence            3567777654433  33455668999999999999999 9999999999999998 641                     


Q ss_pred             cCCCCCccceeeccC--CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CceeEEeecCCcCeeEEEEcC
Q 005277          405 IGPNGRKRSYTLYQG--HSGPVYSASFSPLGDFILSSSADTTIRLWSTKL---------NANLVCYKGHNYPVWDVQFNP  473 (704)
Q Consensus       405 ~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~---------~~~~~~~~~h~~~V~~v~~sp  473 (704)
                              ....+.+  |...|.+++|+| +.+|++++.|+.|++||+.+         ++.+..+. |...|.+++|+|
T Consensus        91 --------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           91 --------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             --------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred             --------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence                    2245667  999999999999 99999999999999999987         66666666 889999999998


Q ss_pred             CCCEEEEEeCCCeEEEEECCC-Cc--eeEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC------cEEEEe
Q 005277          474 QGHYFASSSHDRTARIWSMDR-IQ--PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG------ECVRIF  543 (704)
Q Consensus       474 ~~~~l~sgs~dg~i~lwd~~~-~~--~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~------~~~~~~  543 (704)
                      ++  +++++.|+.|++||+++ ..  .......|...|.+++|+| +++++++|+.||.|++||+..+      +....+
T Consensus       161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  238 (342)
T 1yfq_A          161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence            87  99999999999999988 44  3345557888999999999 9999999999999999999887      778888


Q ss_pred             ecCCC---------CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC-Cceeeeeeeeeeehccccccccccc
Q 005277          544 IGHRS---------MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYRFLLLVTNAYLKISDK  613 (704)
Q Consensus       544 ~~h~~---------~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h-~~~V~sl~~~~~~~~~~~~~~~~~~  613 (704)
                      ..|..         .|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+| ...|.++.                 
T Consensus       239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~-----------------  301 (342)
T 1yfq_A          239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA-----------------  301 (342)
T ss_dssp             ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE-----------------
T ss_pred             ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec-----------------
Confidence            88865         9999999999999999999999999999999999999998 88887763                 


Q ss_pred             cccceeeeeeeEEeecccCCCCCEEEEEeCCCc-EEEEeC
Q 005277          614 VSTGFLFYSLTIIYFGCASCEGSLLASGSADCT-VKLWDV  652 (704)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~-V~iWd~  652 (704)
                                         +++.+|++|+.||. .+.|..
T Consensus       302 -------------------~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          302 -------------------CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             -------------------ECSSEEEEEEECTHHHHCSSS
T ss_pred             -------------------CCCCeEEEEecCCcccccccc
Confidence                               47899999999998 555554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.3e-31  Score=290.29  Aligned_cols=246  Identities=9%  Similarity=0.064  Sum_probs=206.5

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc-----C
Q 005277          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG-----P  423 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~  423 (704)
                      .|...|.+++|||||++||+++.||.|+||+...                              ....+. |..     .
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~------------------------------~l~~l~-~~~~~~~~s  131 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK------------------------------MLTNLD-SKGNLSSRT  131 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE------------------------------EEEECC-CSSCSTTTC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc------------------------------eeeecc-CCCcccccc
Confidence            4467899999999999999999999999999542                              223334 444     5


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------eEEe----ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------LVCY----KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~-------~~~~----~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~  492 (704)
                      |.+++|||||++|++|+.||+|++||+.++..       +.++    .+|...|.+++|+|+|  +++++.|++|++||+
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~  209 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTV  209 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECC
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEEC
Confidence            99999999999999999999999999998753       5665    5677899999999999  888999999999999


Q ss_pred             CCCce---eEEe-ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEE--ecCCCEEEEEe
Q 005277          493 DRIQP---LRIM-AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM--SPDGRYMASGD  566 (704)
Q Consensus       493 ~~~~~---~~~~-~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~--spdg~~l~sg~  566 (704)
                      .....   .+.+ .+|...|.+++|+  +++||+++ +++|++||+.+++......+|.+.|..++|  +|++..|++++
T Consensus       210 ~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          210 SASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             CSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred             CCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence            88763   3456 4788999999999  68999997 699999999988875444489999999999  99999999999


Q ss_pred             CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT  646 (704)
Q Consensus       567 ~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~  646 (704)
                      .||+ ++|...                .+++                                  +|++..+++.  |++
T Consensus       287 edG~-klw~~d----------------~~~~----------------------------------spd~~l~a~~--d~~  313 (588)
T 2j04_A          287 KTSY-KVLLED----------------ELHV----------------------------------TADNIIAPYL--EKK  313 (588)
T ss_dssp             SCEE-EEEESS----------------SEEE----------------------------------ECCCSSHHHH--HHH
T ss_pred             CCCC-EEEeec----------------cEEE----------------------------------CCCceEEEEc--CCE
Confidence            9999 999976                1335                                  8899888775  999


Q ss_pred             EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277          647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       647 V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~  700 (704)
                      +++|+...+.                +..+.+ ...|++++|||||.++|+++.
T Consensus       314 v~lW~~~g~~----------------l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          314 FKKWSTIWNE----------------FNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             HHHTTTTTTS----------------SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             EEEEECCCCc----------------eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence            9999975432                334444 677999999999999998874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=6.1e-29  Score=273.46  Aligned_cols=288  Identities=25%  Similarity=0.454  Sum_probs=244.5

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ...+++|+..... +..++.+|.+.|.+++|+  +++|++|+.||.|++||+.+                          
T Consensus       138 dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~--------------------------  188 (445)
T 2ovr_B          138 DNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET--------------------------  188 (445)
T ss_dssp             TSCEEEEETTTCC-EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT--------------------------
T ss_pred             CCcEEEEECCCCc-EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc--------------------------
Confidence            3567788765433 455678899999999997  67999999999999999875                          


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEE
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~  488 (704)
                        ......+.+|...|.++.|+  ++.+++|+.||+|++||+.+++.+..+.+|..+|.+++|  ++.++++|+.||.|+
T Consensus       189 --~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~  262 (445)
T 2ovr_B          189 --GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVK  262 (445)
T ss_dssp             --TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEE
T ss_pred             --CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEE
Confidence              23456677899999999996  678999999999999999999999999999999999999  788999999999999


Q ss_pred             EEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC
Q 005277          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (704)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d  568 (704)
                      +||+++++++..+.+|...|.++.|  ++.++++|+.||.|++||+++++++..+.+|...+.++.+  ++++|++|+.|
T Consensus       263 iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d  338 (445)
T 2ovr_B          263 VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNAD  338 (445)
T ss_dssp             EEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETT
T ss_pred             EEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCC
Confidence            9999999999999999999999999  7899999999999999999999999999999999998887  47799999999


Q ss_pred             CeEEEEeCCCCeeeeeecC---CCceeeeeeeeeee---hccccccccccccccceeee--------eeeEEeecccCCC
Q 005277          569 GTIMMWDLASGRCVTPLMG---HTSCVWTLAYRFLL---LVTNAYLKISDKVSTGFLFY--------SLTIIYFGCASCE  634 (704)
Q Consensus       569 g~I~iwdl~~~~~~~~~~~---h~~~V~sl~~~~~~---~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~  634 (704)
                      |.|++||+++++.+..+.+   |...|.++.|....   ...++.+.+++.........        ....+...+++|+
T Consensus       339 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  418 (445)
T 2ovr_B          339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  418 (445)
T ss_dssp             SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             CeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC
Confidence            9999999999999998876   88899999984322   22345566666544332211        1224555677999


Q ss_pred             CCEEEEEeCCCc----EEEEeCCCC
Q 005277          635 GSLLASGSADCT----VKLWDVTTS  655 (704)
Q Consensus       635 g~~lasgs~Dg~----V~iWd~~~~  655 (704)
                      +.++++|+.||+    |.|||+...
T Consensus       419 ~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          419 KLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEEEEEcccCCCCccEEEEEECCCC
Confidence            999999999998    999999764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=2.7e-30  Score=283.43  Aligned_cols=234  Identities=14%  Similarity=0.315  Sum_probs=197.5

Q ss_pred             CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------eeEEeecCC------------cCeeEEEEcCCC
Q 005277          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-----------NLVCYKGHN------------YPVWDVQFNPQG  475 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-----------~~~~~~~h~------------~~V~~v~~sp~~  475 (704)
                      .|.+.|++++|+|++++|++|+.||.|++|++.++.           ....+.+|.            .+|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            478999999999999999999999999999999876           477888998            889999999998


Q ss_pred             --CEEEEEeCCCeEEEEECCCCcee---------------------------------------EE-eccCCCCeeEEEE
Q 005277          476 --HYFASSSHDRTARIWSMDRIQPL---------------------------------------RI-MAGHLSDVDCVRW  513 (704)
Q Consensus       476 --~~l~sgs~dg~i~lwd~~~~~~~---------------------------------------~~-~~~~~~~V~~v~~  513 (704)
                        .+|++++.||+|++||+......                                       +. ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              89999999999999998763321                                       12 3579999999999


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCC-CcEEEE-------eecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEeCCCCee---
Q 005277          514 HINCNYIATGSSDKTVRLWDVSS-GECVRI-------FIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRC---  581 (704)
Q Consensus       514 ~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~-------~~~h~~~i~~l~~spdg-~~l~sg~~dg~I~iwdl~~~~~---  581 (704)
                      +|++++|++| .|+.|++||+++ +..+..       +.+|...|.+++|+|+| ++|++|+.||.|++||+++++.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999999 899999999984 445542       55899999999999998 9999999999999999999887   


Q ss_pred             -eeeecCCCc------------eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEE
Q 005277          582 -VTPLMGHTS------------CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVK  648 (704)
Q Consensus       582 -~~~~~~h~~------------~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~  648 (704)
                       +..+.+|..            .|.++.|                                  +|++.+|++|+. |.|+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------s~~g~~l~~~~~-~~v~  309 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKF----------------------------------SHSGRYMMTRDY-LSVK  309 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEE----------------------------------CTTSSEEEEEES-SEEE
T ss_pred             eeeEeccCCCccccccccccCceEEEEEE----------------------------------CCCCCEEEEeeC-CeEE
Confidence             778888876            8999999                                  999999999999 9999


Q ss_pred             EEeCCC-CccccccccccCccccccccccCCCCc---------------CeEEEEEccCCcEEEEeecCCC
Q 005277          649 LWDVTT-STKVLKTEEKSGTNRLRSLKTLPTKST---------------PVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       649 iWd~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      |||+.+ +...               ..+..|..               .+..++|+|++.+|++|+.||+
T Consensus       310 iwd~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~  365 (447)
T 3dw8_B          310 VWDLNMENRPV---------------ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF  365 (447)
T ss_dssp             EEETTCCSSCS---------------CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred             EEeCCCCcccc---------------ceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE
Confidence            999987 4332               22222221               2445999999999999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=3.9e-29  Score=276.28  Aligned_cols=235  Identities=28%  Similarity=0.530  Sum_probs=212.3

Q ss_pred             ceeeccCCccCe-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277          413 SYTLYQGHSGPV-YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (704)
Q Consensus       413 ~~~~~~~h~~~V-~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd  491 (704)
                      ....+.+|.+.| .++.+  ++++|++|+.||+|++||+.+++.+..+.+|..+|++++|+|++ ++++|+.||+|++||
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd  189 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD  189 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence            445678898885 66666  47899999999999999999999999999999999999999988 999999999999999


Q ss_pred             CCCCceeEEeccCCCCeeEEEEc--CCCCEEEEEECCCcEEEEeCCCCc-----------------------EEEEeecC
Q 005277          492 MDRIQPLRIMAGHLSDVDCVRWH--INCNYIATGSSDKTVRLWDVSSGE-----------------------CVRIFIGH  546 (704)
Q Consensus       492 ~~~~~~~~~~~~~~~~V~~v~~~--p~~~~l~tgs~dg~I~iwd~~~~~-----------------------~~~~~~~h  546 (704)
                      +++++.+..+.+|...|.+++|+  ++++++++|+.||+|++||++++.                       .+..+.+|
T Consensus       190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (464)
T 3v7d_B          190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  269 (464)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred             CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence            99999999999999999999998  578999999999999999998765                       25567789


Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEE
Q 005277          547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTII  626 (704)
Q Consensus       547 ~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (704)
                      ...|.++  +++++++++|+.||.|++||+++++.+..+.+|...|.++.|                             
T Consensus       270 ~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~-----------------------------  318 (464)
T 3v7d_B          270 MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY-----------------------------  318 (464)
T ss_dssp             SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-----------------------------
T ss_pred             cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE-----------------------------
Confidence            8888877  678999999999999999999999999999999999999999                             


Q ss_pred             eecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          627 YFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       627 ~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                           +++++++++|+.||.|++||+.++..               +..+..|..+|.++.|+  +.+|++|+.||+
T Consensus       319 -----~~~~~~l~sg~~dg~i~vwd~~~~~~---------------~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~  373 (464)
T 3v7d_B          319 -----DHERKRCISASMDTTIRIWDLENGEL---------------MYTLQGHTALVGLLRLS--DKFLVSAAADGS  373 (464)
T ss_dssp             -----ETTTTEEEEEETTSCEEEEETTTTEE---------------EEEECCCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred             -----cCCCCEEEEEeCCCcEEEEECCCCcE---------------EEEEeCCCCcEEEEEEc--CCEEEEEeCCCc
Confidence                 99999999999999999999988643               55677889999999997  578999999874

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.2e-28  Score=269.48  Aligned_cols=283  Identities=12%  Similarity=0.057  Sum_probs=232.3

Q ss_pred             EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      ..........+.+++|+|++.++++++.++.|++||+.+......                       .....+.+|.+.
T Consensus       115 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~-----------------------~~~~~~~~~~~~  171 (433)
T 3bws_A          115 FISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL-----------------------SPPEKYKKKLGF  171 (433)
T ss_dssp             EEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEE-----------------------CCCHHHHTTCCE
T ss_pred             EEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeee-----------------------cCcccccccCCc
Confidence            333444556677999999888889998999999999875321110                       011135689999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEec
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMA  502 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg-s~dg~i~lwd~~~~~~~~~~~  502 (704)
                      |.+++|+|++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|++.+++++ +.|+.|++||+++++.+..+.
T Consensus       172 v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~  251 (433)
T 3bws_A          172 VETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD  251 (433)
T ss_dssp             EEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC
T ss_pred             eeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec
Confidence            9999999999999999999999999999999999999999999999999999988554 479999999999998888777


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEE--------CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEE-EEEeCCCeEEE
Q 005277          503 GHLSDVDCVRWHINCNYIATGS--------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMM  573 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs--------~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l-~sg~~dg~I~i  573 (704)
                      .+ ..+.+++|+|+++++++++        .||.|++||+++++.+..+ .|...+.+++|+|+|+.+ ++++.|+.|++
T Consensus       252 ~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v  329 (433)
T 3bws_A          252 KI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEV  329 (433)
T ss_dssp             CC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred             CC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEE
Confidence            54 5699999999999999988        5889999999999887765 456689999999999755 66689999999


Q ss_pred             EeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC----------
Q 005277          574 WDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA----------  643 (704)
Q Consensus       574 wdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~----------  643 (704)
                      ||+.+++.+..+. +...+.++.|                                  +|+++++++++.          
T Consensus       330 ~d~~~~~~~~~~~-~~~~~~~~~~----------------------------------s~dg~~l~~~~~~~~~~~~~~~  374 (433)
T 3bws_A          330 YDLKEKKVQKSIP-VFDKPNTIAL----------------------------------SPDGKYLYVSCRGPNHPTEGYL  374 (433)
T ss_dssp             EETTTTEEEEEEE-CSSSEEEEEE----------------------------------CTTSSEEEEEECCCCCTTTCTT
T ss_pred             EECCCCcEEEEec-CCCCCCeEEE----------------------------------cCCCCEEEEEecCCCccccccc
Confidence            9999998887776 6677888888                                  999998888776          


Q ss_pred             -----CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec-CC
Q 005277          644 -----DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL-SK  702 (704)
Q Consensus       644 -----Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~-dg  702 (704)
                           ||.|++||+.+++..               ..+.. ...+.+++|+|+|.+|++++. |+
T Consensus       375 ~~g~~dg~v~~~d~~~~~~~---------------~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~  423 (433)
T 3bws_A          375 KKGLVLGKVYVIDTTTDTVK---------------EFWEA-GNQPTGLDVSPDNRYLVISDFLDH  423 (433)
T ss_dssp             SCCSSCCEEEEEETTTTEEE---------------EEEEC-SSSEEEEEECTTSCEEEEEETTTT
T ss_pred             cccccceEEEEEECCCCcEE---------------EEecC-CCCCceEEEcCCCCEEEEEECCCC
Confidence                 579999999886542               22322 456899999999999988765 55

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=5.7e-29  Score=268.66  Aligned_cols=247  Identities=21%  Similarity=0.323  Sum_probs=207.0

Q ss_pred             eCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          349 NTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       349 ~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      .|...|.+++|+| ++.+|++|+.||.|++||+...                            .....+ .+...+.++
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------------------~~~~~~-~~~~~~~~~  147 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----------------------------QTADVF-NFEETVYSH  147 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT----------------------------EEEEEE-ECSSCEEEE
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC----------------------------ccceec-cCCCceeee
Confidence            4889999999999 7889999999999999998752                            122222 367889999


Q ss_pred             EEcCCC---CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC-EEEEEeCCCeEEEEECCCCc-eeEEe-
Q 005277          428 SFSPLG---DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQ-PLRIM-  501 (704)
Q Consensus       428 ~~sp~~---~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-~l~sgs~dg~i~lwd~~~~~-~~~~~-  501 (704)
                      .|+|.+   .++++++.||.|++||+.++..+..+.+|..+|.+++|+|++. .|++|+.||.|++||+++.. ++..+ 
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~  227 (408)
T 4a11_B          148 HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD  227 (408)
T ss_dssp             EECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECC
T ss_pred             EeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccc
Confidence            999854   4999999999999999999999999999999999999999988 59999999999999998765 44444 


Q ss_pred             --------------ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-----CCEEEEEEecCCCEE
Q 005277          502 --------------AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYM  562 (704)
Q Consensus       502 --------------~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~i~~l~~spdg~~l  562 (704)
                                    .+|...|.+++|+|++++|++++.||.|++||+.+++....+.++.     ..+........+..+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
T 4a11_B          228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF  307 (408)
T ss_dssp             TTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred             ccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence                          5688999999999999999999999999999999987765443321     122222223345667


Q ss_pred             EEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe
Q 005277          563 ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS  642 (704)
Q Consensus       563 ~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs  642 (704)
                      ++++.|+.|++||+.+++.+..+.+|...|.++.|                                  +|++.+|++|+
T Consensus       308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~----------------------------------s~~~~~l~s~~  353 (408)
T 4a11_B          308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF----------------------------------QSNFQELYSGS  353 (408)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE----------------------------------ETTTTEEEEEE
T ss_pred             EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE----------------------------------cCCCCEEEEEC
Confidence            77888999999999999999999999999999999                                  99999999999


Q ss_pred             CCCcEEEEeCCCCccc
Q 005277          643 ADCTVKLWDVTTSTKV  658 (704)
Q Consensus       643 ~Dg~V~iWd~~~~~~~  658 (704)
                      .||.|++||+.+.+.+
T Consensus       354 ~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          354 RDCNILAWVPSLYEPV  369 (408)
T ss_dssp             TTSCEEEEEECC----
T ss_pred             CCCeEEEEeCCCCCcc
Confidence            9999999999987654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=3.1e-30  Score=279.46  Aligned_cols=246  Identities=14%  Similarity=0.126  Sum_probs=182.7

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      .|...+....+++++.+||+|+.|++|+|||+.......                       ......+.||.+.|++++
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~-----------------------~~~~~~~~gH~~~v~~v~  143 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIIT-----------------------QHVLGGKSGHHNFVNDID  143 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEE-----------------------EEEECTTTSCSSCEEEEE
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccce-----------------------eeeecccCCCCCceEEEE
Confidence            344455666677789999999999999999987532111                       123445789999999999


Q ss_pred             EcC--------CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeE
Q 005277          429 FSP--------LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       429 ~sp--------~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      |+|        ++++|+||+.|++|+|||+.++.++..+.+|..+|.+++|+|++ .+|++|+.||+|++||+++++...
T Consensus       144 ~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~  223 (393)
T 4gq1_A          144 IADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAE  223 (393)
T ss_dssp             EEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC---
T ss_pred             EccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccc
Confidence            998        78899999999999999999998888888899999999999987 589999999999999998765432


Q ss_pred             E-------------------------eccCCCCeeEEEEc-CCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEE
Q 005277          500 I-------------------------MAGHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL  553 (704)
Q Consensus       500 ~-------------------------~~~~~~~V~~v~~~-p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l  553 (704)
                      .                         ..+|...+.++.|+ |++..|++++.|+++++||+.+++....+..|...+..+
T Consensus       224 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~  303 (393)
T 4gq1_A          224 ENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPK  303 (393)
T ss_dssp             -------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------
T ss_pred             cccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccE
Confidence            2                         23577889999987 799999999999999999999887776666665555444


Q ss_pred             EEec--------------------CCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccc
Q 005277          554 AMSP--------------------DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDK  613 (704)
Q Consensus       554 ~~sp--------------------dg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~  613 (704)
                      .+.|                    ++.++++|+.||.|++||+.+++.+....+|..+|.+++|                
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svaf----------------  367 (393)
T 4gq1_A          304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCW----------------  367 (393)
T ss_dssp             CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEE----------------
T ss_pred             EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEE----------------
Confidence            3333                    3446778889999999999999998888889999999999                


Q ss_pred             cccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277          614 VSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV  652 (704)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~  652 (704)
                                        +|+|++||+++.+| +.+|.+
T Consensus       368 ------------------spdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          368 ------------------HQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             ------------------CTTSSEEEEEESSE-EEEEEE
T ss_pred             ------------------cCCCCEEEEEeCCC-eEEEEE
Confidence                              99999999999766 666654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.1e-29  Score=273.58  Aligned_cols=220  Identities=15%  Similarity=0.087  Sum_probs=193.5

Q ss_pred             eeCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEEcc--cCCccccccccCCCCCCCCcccccCCCCCccceeecc--CCcc
Q 005277          348 INTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMA--KLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ--GHSG  422 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~l-asg~~dg~I~iwdl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~  422 (704)
                      .+|.+.|+|++|+|++++| |+|+.||.|+||++.  ..                            .....+.  +|..
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~----------------------------~~~~~~~~~~~~~  150 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK----------------------------NVLKLRKRFCFSK  150 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS----------------------------SCEEEEEEEECSS
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC----------------------------ceeeeeecccCCC
Confidence            4678899999999999996 899999999999987  31                            1222332  5778


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE----EeecCCcCeeEEEEcCC---CCEEEEEeCCCeEEEEECCCC
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV----CYKGHNYPVWDVQFNPQ---GHYFASSSHDRTARIWSMDRI  495 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~----~~~~h~~~V~~v~~sp~---~~~l~sgs~dg~i~lwd~~~~  495 (704)
                      .|.+++|+|++++|++|+.||.|++|++.++....    .+.+|...|++++|+|+   +.+|++|+.|++|++||++++
T Consensus       151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~  230 (450)
T 2vdu_B          151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC  230 (450)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence            99999999999999999999999999998877554    77889999999999999   999999999999999999998


Q ss_pred             ceeEE-eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec-------------------------CCCC
Q 005277          496 QPLRI-MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-------------------------HRSM  549 (704)
Q Consensus       496 ~~~~~-~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-------------------------h~~~  549 (704)
                      +.+.. +.+|...|.+++|+ ++++|++|+.|+.|++||+++++++..+..                         ....
T Consensus       231 ~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (450)
T 2vdu_B          231 FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA  309 (450)
T ss_dssp             TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred             ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence            88877 55899999999999 999999999999999999999998888763                         2457


Q ss_pred             EEEEEEecCCCEEEEEe-CCCeEEEEeC--CCC---eeeeeecCCCceeeeeee
Q 005277          550 ILSLAMSPDGRYMASGD-EDGTIMMWDL--ASG---RCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       550 i~~l~~spdg~~l~sg~-~dg~I~iwdl--~~~---~~~~~~~~h~~~V~sl~~  597 (704)
                      |.+++|+|++++|++++ .|+.|++||+  .++   ..+..+.+| ..|.+++|
T Consensus       310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~  362 (450)
T 2vdu_B          310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSA  362 (450)
T ss_dssp             EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEe
Confidence            99999999999999998 8999999999  565   677778888 88999999

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.8e-28  Score=260.60  Aligned_cols=260  Identities=16%  Similarity=0.170  Sum_probs=218.3

Q ss_pred             cCeEeecCCCC-CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277          329 RNRVHLSSAAL-PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (704)
Q Consensus       329 ~~~~~l~~~~~-p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (704)
                      ...+++|+... .......+..|...|++++|+|++++|++|+.||.|++||+...                        
T Consensus        63 dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------------------------  118 (368)
T 3mmy_A           63 ANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN------------------------  118 (368)
T ss_dssp             TSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------------------------
T ss_pred             CCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC------------------------
Confidence            35688888766 33434677889999999999999999999999999999998752                        


Q ss_pred             CCCccceeeccCCccCeEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277          408 NGRKRSYTLYQGHSGPVYSASF--SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (704)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~--sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg  485 (704)
                           ....+.+|..+|.+++|  +|++.+|++++.||+|++||+.+++.+..+..|. .+.++.+.  +..+++++.++
T Consensus       119 -----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~  190 (368)
T 3mmy_A          119 -----QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATAER  190 (368)
T ss_dssp             -----EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGG
T ss_pred             -----CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeCCC
Confidence                 12234569999999999  8999999999999999999999999999888765 56666665  45889999999


Q ss_pred             eEEEEECCCCceeEEec--cCCCCeeEEEEcCCCCE----EEEEECCCcEEEEeCCCC---cEEEEeecCCC--------
Q 005277          486 TARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNY----IATGSSDKTVRLWDVSSG---ECVRIFIGHRS--------  548 (704)
Q Consensus       486 ~i~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~~~~----l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~--------  548 (704)
                      .+++|+++.........  .+...+.++++.++...    +++|+.||.|++||++..   ..+..+.+|..        
T Consensus       191 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (368)
T 3mmy_A          191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP  270 (368)
T ss_dssp             CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCC
T ss_pred             cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccc
Confidence            99999998765433322  34456777777765544    999999999999999987   56777777776        


Q ss_pred             ----CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeee
Q 005277          549 ----MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT  624 (704)
Q Consensus       549 ----~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (704)
                          .|++++|+|+|++|++|+.||.|++||+.+++++..+.+|...|.+++|                           
T Consensus       271 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---------------------------  323 (368)
T 3mmy_A          271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF---------------------------  323 (368)
T ss_dssp             EEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEE---------------------------
T ss_pred             ccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEE---------------------------
Confidence                7999999999999999999999999999999999999999999999999                           


Q ss_pred             EEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          625 IIYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       625 ~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                             +|+|.+|++|+.|+..+.|++..
T Consensus       324 -------s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          324 -------NHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             -------CTTSSCEEEEECCCSTTCGGGCC
T ss_pred             -------CCCCCeEEEEecccccccccccC
Confidence                   99999999999998766666544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.6e-27  Score=245.99  Aligned_cols=260  Identities=15%  Similarity=0.108  Sum_probs=183.9

Q ss_pred             EEEEEEcCCCC---EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccc-cCCC-CCccceeeccCCccCeEEEE
Q 005277          354 LNCASISQDGS---LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI-IGPN-GRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       354 V~~~~fs~dg~---~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~h~~~V~~l~  428 (704)
                      +.++.|-.-|-   .+++++ ...|++|+................  ..+...+ ..++ .+.-++..-.-|...|.+++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla  118 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFA--EVPVLQIVPVPDVYNLVCVALGNLEIREIRALF  118 (356)
T ss_dssp             EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECC--SSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred             EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEecc--CceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence            66777765443   566665 678999998764111110000000  0000000 0010 11112222233556778888


Q ss_pred             EcCC----CCEEEEEeC--------------------CCeEEEEeCC-CCceeEEeecCCcCeeEEEEcC---CCCEEEE
Q 005277          429 FSPL----GDFILSSSA--------------------DTTIRLWSTK-LNANLVCYKGHNYPVWDVQFNP---QGHYFAS  480 (704)
Q Consensus       429 ~sp~----~~~l~s~s~--------------------Dg~I~lwd~~-~~~~~~~~~~h~~~V~~v~~sp---~~~~l~s  480 (704)
                      |+|+    ++++++++.                    |++|++|++. .++.+..+.+|...+..++|+|   ++.+|++
T Consensus       119 ~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaS  198 (356)
T 2w18_A          119 CSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLG  198 (356)
T ss_dssp             C------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEE
T ss_pred             ECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEE
Confidence            8888    666666543                    8889999984 4777788888998999999999   7799999


Q ss_pred             EeCCCeEEEEECCCCceeEEeccCC---CCeeEEEEcCCCCEE------------EEEECCCcEEEEeCCCCcEEEEe--
Q 005277          481 SSHDRTARIWSMDRIQPLRIMAGHL---SDVDCVRWHINCNYI------------ATGSSDKTVRLWDVSSGECVRIF--  543 (704)
Q Consensus       481 gs~dg~i~lwd~~~~~~~~~~~~~~---~~V~~v~~~p~~~~l------------~tgs~dg~I~iwd~~~~~~~~~~--  543 (704)
                      |+.|++|+|||+.+++.++.+.+|.   ..+.+++|+|+|.++            ++|+.|++|++||..+++.+..+  
T Consensus       199 gS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~  278 (356)
T 2w18_A          199 TTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLY  278 (356)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEE
T ss_pred             ecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEe
Confidence            9999999999999999999998654   357778999999886            56888999999999999988766  


Q ss_pred             ---ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceee-eeeeeeeehcccccccccccccccee
Q 005277          544 ---IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW-TLAYRFLLLVTNAYLKISDKVSTGFL  619 (704)
Q Consensus       544 ---~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~-sl~~~~~~~~~~~~~~~~~~~~~~~~  619 (704)
                         .+|...+.+..++  +.++++|+.||+|+|||+.+++++.++.+|...+. +++|                      
T Consensus       279 ~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf----------------------  334 (356)
T 2w18_A          279 CLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW----------------------  334 (356)
T ss_dssp             CCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE----------------------
T ss_pred             eccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE----------------------
Confidence               3676665555554  88999999999999999999999999999987665 4789                      


Q ss_pred             eeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277          620 FYSLTIIYFGCASCEGSLLASGSADCTVKLWDV  652 (704)
Q Consensus       620 ~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~  652 (704)
                                  +|+|++|++|+.|++|+|||+
T Consensus       335 ------------SPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          335 ------------SGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ------------CSSSSEEEEECTTSCEEEEEE
T ss_pred             ------------CCCCCEEEEEECCCcEEEecC
Confidence                        999999999999999999995

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=2.9e-26  Score=247.02  Aligned_cols=263  Identities=14%  Similarity=0.131  Sum_probs=213.9

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ..+++|+.....  ......++..+.+++|+|+|++| ++++.|+.|++||+.+.                         
T Consensus        12 ~~v~v~d~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~-------------------------   64 (391)
T 1l0q_A           12 DNISVIDVTSNK--VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN-------------------------   64 (391)
T ss_dssp             TEEEEEETTTTE--EEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-------------------------
T ss_pred             CEEEEEECCCCe--EEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC-------------------------
Confidence            467777654332  22234455679999999999976 67778999999998652                         


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEE-EEEeCCCe
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF-ASSSHDRT  486 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l-~sgs~dg~  486 (704)
                         .....+..|. .+.+++|+|++++|+ +++.++.|++||+.+++.+..+..| ..+.+++|+|+++++ ++++.++.
T Consensus        65 ---~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~  139 (391)
T 1l0q_A           65 ---NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKT  139 (391)
T ss_dssp             ---EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTE
T ss_pred             ---eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCE
Confidence               2233333333 899999999999876 5556799999999999888887755 468999999999977 67888999


Q ss_pred             EEEEECCCCceeEEeccCCCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (704)
Q Consensus       487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg  565 (704)
                      |++||+.+++.+..+..+ ..+.+++|+|+++++ ++++.++.|++||+++++.+..+. +...+.+++|+|+|++|+++
T Consensus       140 v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~  217 (391)
T 1l0q_A          140 VSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVT  217 (391)
T ss_dssp             EEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEE
T ss_pred             EEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEE
Confidence            999999999888888765 567999999999988 567788999999999998887775 55689999999999999988


Q ss_pred             e---CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEE-EEE
Q 005277          566 D---EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL-ASG  641 (704)
Q Consensus       566 ~---~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-asg  641 (704)
                      +   .++.|++||+.+++.+..+..|.. +.++.|                                  +|++++| +++
T Consensus       218 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~----------------------------------s~dg~~l~~s~  262 (391)
T 1l0q_A          218 NVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAV----------------------------------TPDGKKVYVAL  262 (391)
T ss_dssp             EECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEE----------------------------------CTTSSEEEEEE
T ss_pred             ecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEE----------------------------------ccCCCEEEEEc
Confidence            8   689999999999999888887654 677888                                  9999877 677


Q ss_pred             eCCCcEEEEeCCCCcccccc
Q 005277          642 SADCTVKLWDVTTSTKVLKT  661 (704)
Q Consensus       642 s~Dg~V~iWd~~~~~~~~~~  661 (704)
                      +.|+.|++||+.+++.....
T Consensus       263 ~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          263 SFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEE
Confidence            88999999999987655433

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.2e-28  Score=258.27  Aligned_cols=223  Identities=12%  Similarity=0.052  Sum_probs=184.8

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC---------CCcee
Q 005277          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---------RIQPL  498 (704)
Q Consensus       428 ~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~---------~~~~~  498 (704)
                      .+.+++.+|++|+.||+|++||+.+++.+..+.  ...|.++.|+|.   +++|+.|+++++|+.+         +.+.+
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            445678899999999999999999999888776  567888999988   9999999999999765         44444


Q ss_pred             EEec-cCCCCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277          499 RIMA-GHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (704)
Q Consensus       499 ~~~~-~~~~~V~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg~~l~sg~~dg~I~iw  574 (704)
                      ..+. +|...|.+++|+|  +++++++|+.||+|++||+++++++.... .|...|++++|+|+|.+|++|+.||.|++|
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw  197 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY  197 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred             EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence            4444 6778899999999  99999999999999999999999977664 455689999999999999999999999999


Q ss_pred             eCCCCeee-eeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277          575 DLASGRCV-TPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV  652 (704)
Q Consensus       575 dl~~~~~~-~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~  652 (704)
                      |+++++.+ ..+.+ |.+.|.++.|                                  +|++.+|++|+ |+.|++||+
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~l~f----------------------------------s~~g~~l~s~~-~~~v~iwd~  242 (343)
T 3lrv_A          198 NLSSPDQASSRFPVDEEAKIKEVKF----------------------------------ADNGYWMVVEC-DQTVVCFDL  242 (343)
T ss_dssp             ESSCTTSCCEECCCCTTSCEEEEEE----------------------------------CTTSSEEEEEE-SSBEEEEET
T ss_pred             ECCCCCCCccEEeccCCCCEEEEEE----------------------------------eCCCCEEEEEe-CCeEEEEEc
Confidence            99999887 77887 9999999999                                  99999999999 559999999


Q ss_pred             CCCccccccccccCccccccccccCCCCcCe--EEEEEccCCcEEEEeec-CC
Q 005277          653 TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV--YSLQFSRRNLLFAAGAL-SK  702 (704)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V--~~l~fs~~g~~La~gs~-dg  702 (704)
                      .+......            +..+..+..++  .+++|+|+|.+|++|+. |+
T Consensus       243 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~  283 (343)
T 3lrv_A          243 RKDVGTLA------------YPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN  283 (343)
T ss_dssp             TSSTTCBS------------SCCCBC-----CCEEEEECTTSSEEEEEETTTT
T ss_pred             CCCCccee------------ecccccccccccceEEEECCCCCEEEEecCCCC
Confidence            88754321            22222233333  46999999999999876 54

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.9e-26  Score=248.44  Aligned_cols=256  Identities=13%  Similarity=0.108  Sum_probs=210.4

Q ss_pred             CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE-EEEeCC
Q 005277          364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSAD  442 (704)
Q Consensus       364 ~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~D  442 (704)
                      .++++|+.|+.|++||+.+                            ......+.+|. .+.+++|+|++++| ++++.|
T Consensus         3 ~l~vs~~~d~~v~v~d~~~----------------------------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d   53 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTS----------------------------NKVTATIPVGS-NPMGAVISPDGTKVYVANAHS   53 (391)
T ss_dssp             EEEEEETTTTEEEEEETTT----------------------------TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGG
T ss_pred             EEEEEcCCCCEEEEEECCC----------------------------CeEEEEeecCC-CcceEEECCCCCEEEEECCCC
Confidence            4688899999999999875                            22334445554 58999999999987 577799


Q ss_pred             CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEE-
Q 005277          443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-  520 (704)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l-  520 (704)
                      ++|++||+.+++.+..+..+. .+.+++|+|+++++++++ .++.|++||+.+++.+..+..+ ..+.+++|+|+++++ 
T Consensus        54 ~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~  131 (391)
T 1l0q_A           54 NDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY  131 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred             CeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence            999999999999988887665 899999999999876554 6799999999999888887754 578999999999988 


Q ss_pred             EEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEE-EEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeee
Q 005277          521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRF  599 (704)
Q Consensus       521 ~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l-~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~  599 (704)
                      ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+|++| ++++.++.|++||+++++.+..+. +...+.++.|  
T Consensus       132 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~--  207 (391)
T 1l0q_A          132 VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAV--  207 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEE--
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEE--
Confidence            67778999999999999998888765 457999999999987 577889999999999998887776 4557788888  


Q ss_pred             eehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe---CCCcEEEEeCCCCccccccccccCcccccccccc
Q 005277          600 LLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS---ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL  676 (704)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs---~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~  676 (704)
                                                      +|++++|++++   .++.|++||+.++...               ..+
T Consensus       208 --------------------------------~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~---------------~~~  240 (391)
T 1l0q_A          208 --------------------------------NPEGTKAYVTNVDKYFNTVSMIDTGTNKIT---------------ARI  240 (391)
T ss_dssp             --------------------------------CTTSSEEEEEEECSSCCEEEEEETTTTEEE---------------EEE
T ss_pred             --------------------------------CCCCCEEEEEecCcCCCcEEEEECCCCeEE---------------EEE
Confidence                                            99999998888   6899999999876532               233


Q ss_pred             CCCCcCeEEEEEccCCcEE-EEeecCC
Q 005277          677 PTKSTPVYSLQFSRRNLLF-AAGALSK  702 (704)
Q Consensus       677 ~~~~~~V~~l~fs~~g~~L-a~gs~dg  702 (704)
                      ..+ ..+.+++|+|+|..| ++++.|+
T Consensus       241 ~~~-~~~~~~~~s~dg~~l~~s~~~d~  266 (391)
T 1l0q_A          241 PVG-PDPAGIAVTPDGKKVYVALSFXN  266 (391)
T ss_dssp             ECC-SSEEEEEECTTSSEEEEEETTTT
T ss_pred             ecC-CCccEEEEccCCCEEEEEcCCCC
Confidence            333 347899999999877 5656665

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=1.2e-25  Score=245.52  Aligned_cols=259  Identities=12%  Similarity=0.111  Sum_probs=214.8

Q ss_pred             CeEeecCCCCCCeEEE----EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277          330 NRVHLSSAALPSVSFY----TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~----~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (704)
                      ..+++|+.........    .+.+|.+.|.+++|++++.++++++.|+.|++||+.+                       
T Consensus       144 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~-----------------------  200 (433)
T 3bws_A          144 EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT-----------------------  200 (433)
T ss_dssp             SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-----------------------
T ss_pred             CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-----------------------
Confidence            3577776554433221    2346778999999999999999999999999999875                       


Q ss_pred             CCCCCccceeeccCCccCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe--
Q 005277          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--  482 (704)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs--  482 (704)
                           ......+..|...+.+++|+|++++++ +++.|+.|++||+.+++.+..+..+ ..+.+++|+|+++++++++  
T Consensus       201 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~  274 (433)
T 3bws_A          201 -----LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFS  274 (433)
T ss_dssp             -----CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEE
T ss_pred             -----ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECC
Confidence                 223445557889999999999999885 5558999999999999888877755 4589999999999999988  


Q ss_pred             ------CCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEE
Q 005277          483 ------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM  555 (704)
Q Consensus       483 ------~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~  555 (704)
                            .||.|++||+.+++.+..+ .|...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+. +...+.+++|
T Consensus       275 ~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~  352 (433)
T 3bws_A          275 ASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL  352 (433)
T ss_dssp             SCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE
T ss_pred             CCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE
Confidence                  4889999999988777665 355688999999999755 566889999999999999888775 6778999999


Q ss_pred             ecCCCEEEEEeC---------------CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceee
Q 005277          556 SPDGRYMASGDE---------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF  620 (704)
Q Consensus       556 spdg~~l~sg~~---------------dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~  620 (704)
                      +|+|++|++++.               ||.|++||+.+++.+..+..+ ..+.++.|                       
T Consensus       353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~-----------------------  408 (433)
T 3bws_A          353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDV-----------------------  408 (433)
T ss_dssp             CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEE-----------------------
T ss_pred             cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEE-----------------------
Confidence            999999988876               579999999999998888764 46788888                       


Q ss_pred             eeeeEEeecccCCCCCEEEEEeC-CCcEEEEeCCC
Q 005277          621 YSLTIIYFGCASCEGSLLASGSA-DCTVKLWDVTT  654 (704)
Q Consensus       621 ~~~~~~~~~~~s~~g~~lasgs~-Dg~V~iWd~~~  654 (704)
                                 +|+|++|++++. |+.|++|++..
T Consensus       409 -----------s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          409 -----------SPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             -----------CTTSCEEEEEETTTTEEEEEEETT
T ss_pred             -----------cCCCCEEEEEECCCCeEEEEEecC
Confidence                       999999988875 99999999863

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=3.3e-26  Score=244.19  Aligned_cols=229  Identities=13%  Similarity=0.115  Sum_probs=183.4

Q ss_pred             eeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEE-EEEeCCCeEEEEEC
Q 005277          414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF-ASSSHDRTARIWSM  492 (704)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l-~sgs~dg~i~lwd~  492 (704)
                      .....+|.++|++++|+|++++|++|+.+| +++|++.++........  ..+..+++.++++++ ++++.|++|++||+
T Consensus        12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred             ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence            344578999999999999999999998775 78999987766654432  257889999988887 56778899999999


Q ss_pred             CCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-cEEEEeecCCCCEEEEEEecCCCEEEE--EeCCC
Q 005277          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMAS--GDEDG  569 (704)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~l~s--g~~dg  569 (704)
                      .+++.+..+. +...|.+++|+++.  ++++ .++.|++||+.++ +.+..+..   +...+++++  .++++  |+.||
T Consensus        89 ~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g  159 (355)
T 3vu4_A           89 VKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLG  159 (355)
T ss_dssp             TTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTT
T ss_pred             CCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCc
Confidence            9999988887 66799999998764  4444 4789999999988 66655544   455667777  56665  58999


Q ss_pred             eEEEEeCCCCe----------------eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277          570 TIMMWDLASGR----------------CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC  633 (704)
Q Consensus       570 ~I~iwdl~~~~----------------~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  633 (704)
                      .|++||+.++.                .+..+.+|...|.+++|                                  +|
T Consensus       160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~----------------------------------s~  205 (355)
T 3vu4_A          160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRL----------------------------------NR  205 (355)
T ss_dssp             CEEEEECCC------------------CCEEECCCSSCEEEEEE----------------------------------CT
T ss_pred             EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEE----------------------------------CC
Confidence            99999999875                27788999999999999                                  99


Q ss_pred             CCCEEEEEeCCCc-EEEEeCCCCccccccccccCccccccccccC-C-CCcCeEEEEEccCCcEEEEeecCCC
Q 005277          634 EGSLLASGSADCT-VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP-T-KSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       634 ~g~~lasgs~Dg~-V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      +|++|++|+.||+ |+|||+.++..               +..+. + |..+|.+++|+|+|.+|++|+.|++
T Consensus       206 ~g~~l~s~s~d~~~v~iwd~~~~~~---------------~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~  263 (355)
T 3vu4_A          206 KSDMVATCSQDGTIIRVFKTEDGVL---------------VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT  263 (355)
T ss_dssp             TSSEEEEEETTCSEEEEEETTTCCE---------------EEEEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCcE---------------EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence            9999999999998 99999998754               34444 3 8899999999999999999999975

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=1.4e-25  Score=231.58  Aligned_cols=229  Identities=11%  Similarity=0.143  Sum_probs=174.0

Q ss_pred             CeEEEEEcCCCC---EEEEEeCCCeEEEEeCCCC---ceeEEeecCCcC-------------------------eeEEEE
Q 005277          423 PVYSASFSPLGD---FILSSSADTTIRLWSTKLN---ANLVCYKGHNYP-------------------------VWDVQF  471 (704)
Q Consensus       423 ~V~~l~~sp~~~---~l~s~s~Dg~I~lwd~~~~---~~~~~~~~h~~~-------------------------V~~v~~  471 (704)
                      .+.++.|-..+-   .++++++ .+|++|+...+   +.+.++..|..+                         |+.+++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            356677755443   5777776 58999999988   777777777654                         556667


Q ss_pred             cCC----CCEEEEEeC--------------------CCeEEEEEC-CCCceeEEeccCCCCeeEEEEcC---CCCEEEEE
Q 005277          472 NPQ----GHYFASSSH--------------------DRTARIWSM-DRIQPLRIMAGHLSDVDCVRWHI---NCNYIATG  523 (704)
Q Consensus       472 sp~----~~~l~sgs~--------------------dg~i~lwd~-~~~~~~~~~~~~~~~V~~v~~~p---~~~~l~tg  523 (704)
                      +|+    ++++++++.                    |+.|++|++ .+++.+..+.+|...+..++|+|   ++.+|++|
T Consensus       120 spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg  199 (356)
T 2w18_A          120 SSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT  199 (356)
T ss_dssp             ------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred             CCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence            777    777777653                    888999998 44777777888988999999998   77999999


Q ss_pred             ECCCcEEEEeCCCCcEEEEeecCC---CCEEEEEEecCCCEE------------EEEeCCCeEEEEeCCCCeeeeee---
Q 005277          524 SSDKTVRLWDVSSGECVRIFIGHR---SMILSLAMSPDGRYM------------ASGDEDGTIMMWDLASGRCVTPL---  585 (704)
Q Consensus       524 s~dg~I~iwd~~~~~~~~~~~~h~---~~i~~l~~spdg~~l------------~sg~~dg~I~iwdl~~~~~~~~~---  585 (704)
                      +.|++|+|||+.+|++++++.+|.   ..+.+++|+|+|.++            ++|+.|++|++||..+++.+..+   
T Consensus       200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~  279 (356)
T 2w18_A          200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC  279 (356)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee
Confidence            999999999999999999998754   367888999999986            56888999999999999887655   


Q ss_pred             --cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccc
Q 005277          586 --MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEE  663 (704)
Q Consensus       586 --~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~  663 (704)
                        .+|...+.+.                                    +.++.++++|+.||+|+|||+.+++.      
T Consensus       280 ~p~Gh~~~~lsg------------------------------------~~sg~~lASgS~DgTIkIWDl~tGk~------  317 (356)
T 2w18_A          280 LPPGQAGRFLEG------------------------------------DVKDHCAAAILTSGTIAIWDLLLGQC------  317 (356)
T ss_dssp             CCTTCCCCEEEE------------------------------------EEETTEEEEEETTSCEEEEETTTCSE------
T ss_pred             ccCCCcceeEcc------------------------------------ccCCCEEEEEcCCCcEEEEECCCCcE------
Confidence              3555443322                                    23478999999999999999998754      


Q ss_pred             ccCccccccccccCCCCcCeE-EEEEccCCcEEEEeecCCC
Q 005277          664 KSGTNRLRSLKTLPTKSTPVY-SLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       664 ~~~~~~~~~l~~~~~~~~~V~-~l~fs~~g~~La~gs~dgt  703 (704)
                               +.++.+|...+. .++|||||++|++|+.|+|
T Consensus       318 ---------l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T  349 (356)
T 2w18_A          318 ---------TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN  349 (356)
T ss_dssp             ---------EEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred             ---------EEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence                     456666766554 6899999999999999986

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=2.4e-25  Score=242.69  Aligned_cols=278  Identities=17%  Similarity=0.116  Sum_probs=220.8

Q ss_pred             eEeecCC--CCCCeE-EEEEeeCCCCEEEEEEcC--------------CCCEEEEEeCC------CcEEEEEcccCCccc
Q 005277          331 RVHLSSA--ALPSVS-FYTFINTHNGLNCASISQ--------------DGSLVAGGFSD------SSLKVWDMAKLGQQA  387 (704)
Q Consensus       331 ~~~l~~~--~~p~~~-~~~~~~~~~~V~~~~fs~--------------dg~~lasg~~d------g~I~iwdl~~~~~~~  387 (704)
                      .+++|+.  ...... ..++..|...+.++++++              .+..++.++.+      +.|++||+..     
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-----  168 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-----  168 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-----
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-----
Confidence            6788876  444322 245778888888777765              25666666654      7999999864     


Q ss_pred             cccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeEEeecCCc
Q 005277          388 VSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT---TIRLWSTKLNANLVCYKGHNY  464 (704)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg---~I~lwd~~~~~~~~~~~~h~~  464 (704)
                                              .....+.+|...|.+++|+|++++|++++.++   .|++||+.+++.. .+..|..
T Consensus       169 ------------------------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~  223 (415)
T 2hqs_A          169 ------------------------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPR  223 (415)
T ss_dssp             ------------------------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSS
T ss_pred             ------------------------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCC
Confidence                                    12345567889999999999999999999875   9999999988765 5667888


Q ss_pred             CeeEEEEcCCCCEEE-EEeCCCe--EEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCc
Q 005277          465 PVWDVQFNPQGHYFA-SSSHDRT--ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGE  538 (704)
Q Consensus       465 ~V~~v~~sp~~~~l~-sgs~dg~--i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~I~iwd~~~~~  538 (704)
                      .+.+++|+|+|++++ +++.++.  |++||+.+++. ..+..|...+.+++|+|+|++|++++. ++  .|++||+.+++
T Consensus       224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            999999999999888 6666554  99999988765 566778889999999999999998886 44  68888998887


Q ss_pred             EEEEeecCCCCEEEEEEecCCCEEEEEeCC---CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccc
Q 005277          539 CVRIFIGHRSMILSLAMSPDGRYMASGDED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVS  615 (704)
Q Consensus       539 ~~~~~~~h~~~i~~l~~spdg~~l~sg~~d---g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~  615 (704)
                      .. .+..+...+.+++|+|+|++|++++.+   +.|.+||+.+++.. .+..|. .+.++.|                  
T Consensus       303 ~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~------------------  361 (415)
T 2hqs_A          303 PQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSL------------------  361 (415)
T ss_dssp             CE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEE------------------
T ss_pred             EE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEE------------------
Confidence            53 455677889999999999999988764   58999999988764 455554 7888888                  


Q ss_pred             cceeeeeeeEEeecccCCCCCEEEEEeCCC---cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCC
Q 005277          616 TGFLFYSLTIIYFGCASCEGSLLASGSADC---TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN  692 (704)
Q Consensus       616 ~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg---~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g  692 (704)
                                      +|+|++|++++.++   .|++||+..+.                ...+..+.+.|.+++|+|.-
T Consensus       362 ----------------spdg~~l~~~s~~~~~~~l~~~d~~g~~----------------~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          362 ----------------APNGTMVIYSSSQGMGSVLNLVSTDGRF----------------KARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             ----------------CTTSSEEEEEEEETTEEEEEEEETTSCC----------------EEECCCSSSEEEEEEECCCC
T ss_pred             ----------------cCCCCEEEEEEcCCCccEEEEEECCCCc----------------EEEeeCCCCCCcCCcccccc
Confidence                            99999999988877   79999987532                45677888999999999964

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=2.2e-24  Score=235.13  Aligned_cols=269  Identities=14%  Similarity=0.106  Sum_probs=208.5

Q ss_pred             CEEEEEEcCCC-CEEEEEe----CCC----cEEEEEc--ccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277          353 GLNCASISQDG-SLVAGGF----SDS----SLKVWDM--AKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (704)
Q Consensus       353 ~V~~~~fs~dg-~~lasg~----~dg----~I~iwdl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (704)
                      .+...+|++.| .++++|+    .+|    .|+|||+  .+...                          .....+.+|.
T Consensus        64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~--------------------------~~~~~~~~~~  117 (415)
T 2hqs_A           64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTV--------------------------LAQNSYKVNK  117 (415)
T ss_dssp             GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCE--------------------------EEEEEEEECG
T ss_pred             CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCE--------------------------EeeeEEEcCh
Confidence            45666777775 4666776    467    8999998  54211                          1113456677


Q ss_pred             cCeEEEEEcC--------------CCCEEEEEeCC------CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE
Q 005277          422 GPVYSASFSP--------------LGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS  481 (704)
Q Consensus       422 ~~V~~l~~sp--------------~~~~l~s~s~D------g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg  481 (704)
                      ..+..+++++              .+..++.++.+      ++|++||+. +.....+.+|...|.+++|+|+|++++++
T Consensus       118 ~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~  196 (415)
T 2hqs_A          118 QWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYV  196 (415)
T ss_dssp             GGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEE
Confidence            7776666654              25566655544      799999998 55677788899999999999999999999


Q ss_pred             eCCC---eEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEE-EEECCCc--EEEEeCCCCcEEEEeecCCCCEEEEEE
Q 005277          482 SHDR---TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIA-TGSSDKT--VRLWDVSSGECVRIFIGHRSMILSLAM  555 (704)
Q Consensus       482 s~dg---~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~-tgs~dg~--I~iwd~~~~~~~~~~~~h~~~i~~l~~  555 (704)
                      +.++   .|++||+++++.. .+..|...+.+++|+|+|++|+ +++.++.  |++||+.+++. ..+..|...+.+++|
T Consensus       197 s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~  274 (415)
T 2hqs_A          197 TFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW  274 (415)
T ss_dssp             ECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred             EecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence            9875   9999999988775 4566888999999999999888 5666655  99999998876 456788889999999


Q ss_pred             ecCCCEEEEEeC-CC--eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277          556 SPDGRYMASGDE-DG--TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS  632 (704)
Q Consensus       556 spdg~~l~sg~~-dg--~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  632 (704)
                      +|||++|++++. +|  .|.+||+.+++. ..+..|...+.++.|                                  +
T Consensus       275 spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~----------------------------------s  319 (415)
T 2hqs_A          275 FPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADV----------------------------------S  319 (415)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEE----------------------------------C
T ss_pred             CCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEE----------------------------------C
Confidence            999999998876 44  688889988764 445567778888888                                  9


Q ss_pred             CCCCEEEEEeCC---CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          633 CEGSLLASGSAD---CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       633 ~~g~~lasgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      |+|++|++++.+   +.|++||+.++..                ..+..+. .+.+++|+|+|.+|++++.++
T Consensus       320 pdG~~l~~~~~~~g~~~i~~~d~~~~~~----------------~~l~~~~-~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          320 SDGKFMVMVSSNGGQQHIAKQDLATGGV----------------QVLSSTF-LDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEETTTCCE----------------EECCCSS-SCEEEEECTTSSEEEEEEEET
T ss_pred             CCCCEEEEEECcCCceEEEEEECCCCCE----------------EEecCCC-CcCCeEEcCCCCEEEEEEcCC
Confidence            999999888764   5899999987643                1222333 789999999999999988765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=2.3e-24  Score=221.02  Aligned_cols=256  Identities=18%  Similarity=0.197  Sum_probs=199.6

Q ss_pred             EEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEE
Q 005277          368 GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRL  447 (704)
Q Consensus       368 sg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~l  447 (704)
                      .++.|+.|++||+.+.                             ....+..|.+.|.+++|+|++++|++++ ++.|++
T Consensus        17 ~~~~~~~i~~~d~~~~-----------------------------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~   66 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR-----------------------------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYR   66 (297)
T ss_dssp             -CCCCEEEEEEETTTT-----------------------------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEE
T ss_pred             CCCcceeEEEEeCCCC-----------------------------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEE
Confidence            3457899999998751                             1233455888999999999999999887 789999


Q ss_pred             EeCCC-CceeEEeecC-CcCeeEEEEcCCCCEEEEEe--CCCeEEEEE--CCCCceeEEeccCCCCeeEEEEcCCCCEEE
Q 005277          448 WSTKL-NANLVCYKGH-NYPVWDVQFNPQGHYFASSS--HDRTARIWS--MDRIQPLRIMAGHLSDVDCVRWHINCNYIA  521 (704)
Q Consensus       448 wd~~~-~~~~~~~~~h-~~~V~~v~~sp~~~~l~sgs--~dg~i~lwd--~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~  521 (704)
                      ||+.+ ++.......+ ...+.+++|+|+++++++++  .++...||.  ..++. ...+..+ ..+.+++|+|++++|+
T Consensus        67 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~  144 (297)
T 2ojh_A           67 LSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFT  144 (297)
T ss_dssp             EESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEE
T ss_pred             EeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEE
Confidence            99998 7777666666 46789999999999999998  334555555  44444 3444433 3588999999999887


Q ss_pred             -EEECCCcEEEEeCC-CCcEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCC-CCeeeeeecCCCceeeeeee
Q 005277          522 -TGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       522 -tgs~dg~I~iwd~~-~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~-~~~~~~~~~~h~~~V~sl~~  597 (704)
                       +++.++.+++|++. .+.....+..+...+.+++|+|+|++|++++ .++.+.+|++. .+..+..+..|...+.++.|
T Consensus       145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  224 (297)
T 2ojh_A          145 YCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHP  224 (297)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEE
T ss_pred             EEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEE
Confidence             67789999999863 2333455667888999999999999888766 58999999986 56667778888888889999


Q ss_pred             eeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC-----------CcEEEEeCCCCccccccccccC
Q 005277          598 RFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD-----------CTVKLWDVTTSTKVLKTEEKSG  666 (704)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D-----------g~V~iWd~~~~~~~~~~~~~~~  666 (704)
                                                        +|+|++|++++.+           +.|++||+.++..         
T Consensus       225 ----------------------------------s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~---------  261 (297)
T 2ojh_A          225 ----------------------------------SPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV---------  261 (297)
T ss_dssp             ----------------------------------CTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC---------
T ss_pred             ----------------------------------CCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc---------
Confidence                                              9999999888876           5699999987643         


Q ss_pred             ccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          667 TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       667 ~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                          ..+..+..+...|.+++|+|+|..|++++.+.
T Consensus       262 ----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          262 ----ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             ----EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             ----eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                22334446677899999999999999888764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=5.8e-24  Score=249.19  Aligned_cols=293  Identities=14%  Similarity=0.107  Sum_probs=211.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEeC-CC-----cEEEEEcccCCccccccccCCCCCCCCcccccCCC-CCccceeeccCCccC
Q 005277          351 HNGLNCASISQDGSLVAGGFS-DS-----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN-GRKRSYTLYQGHSGP  423 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~-dg-----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~  423 (704)
                      ...+.+++|||||++|++++. ||     .|.+||+.+.............    +........ ...+....+. ....
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~  110 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL----PGTETLSDEEKARRERQRIA-AMTG  110 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-------------------------CCEE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc----cccccccchhhhhhhhhhhc-cccC
Confidence            456899999999999999998 88     8999999874432221110000    000000000 0000000000 1245


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      |.+++|+|||++|++++. +.|++||+.++.  ....+..|...+.+++|+|+|+++++++ ++.|++||+.+++..+..
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence            889999999999998886 899999999873  4556677888999999999999999987 469999999988766655


Q ss_pred             ccCCCC----------------eeEEEEcCCCCEEEEEECCC---------------------------------cEEEE
Q 005277          502 AGHLSD----------------VDCVRWHINCNYIATGSSDK---------------------------------TVRLW  532 (704)
Q Consensus       502 ~~~~~~----------------V~~v~~~p~~~~l~tgs~dg---------------------------------~I~iw  532 (704)
                      ..+...                +.+++|+|||++|++++.|+                                 .|++|
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            444332                47899999999999988765                                 78999


Q ss_pred             eCCC-CcEEEEee--cCCCCEEEEEEecCCCEEEEEeC-----CCeEEEEeCCCCeeeeeecCCCc----eeeeeeeeee
Q 005277          533 DVSS-GECVRIFI--GHRSMILSLAMSPDGRYMASGDE-----DGTIMMWDLASGRCVTPLMGHTS----CVWTLAYRFL  600 (704)
Q Consensus       533 d~~~-~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~~-----dg~I~iwdl~~~~~~~~~~~h~~----~V~sl~~~~~  600 (704)
                      |+.+ ++......  .|...+.+++| |||++|++++.     ++.|++||+.+++....+..+..    .+.++.|   
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~---  344 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF---  344 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE---
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE---
Confidence            9998 87765543  37778999999 99999997654     57899999999987766655442    3457777   


Q ss_pred             ehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCC
Q 005277          601 LLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS  680 (704)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  680 (704)
                                                     +|+|+++++++.||.++||.+.....               +..+..+.
T Consensus       345 -------------------------------spdg~~~~~~~~~g~~~l~~~~~~~~---------------~~~l~~~~  378 (741)
T 2ecf_A          345 -------------------------------LDDGSILWSSERTGFQHLYRIDSKGK---------------AAALTHGN  378 (741)
T ss_dssp             -------------------------------CTTSCEEEEECTTSSCEEEEECSSSC---------------EEESCCSS
T ss_pred             -------------------------------CCCCeEEEEecCCCccEEEEEcCCCC---------------eeeeeecc
Confidence                                           99999999999999999988763211               22344556


Q ss_pred             cCeEEE-EEccCCcEEEEeec
Q 005277          681 TPVYSL-QFSRRNLLFAAGAL  700 (704)
Q Consensus       681 ~~V~~l-~fs~~g~~La~gs~  700 (704)
                      ..|..+ .|+|+|..|++.+.
T Consensus       379 ~~v~~~~~~s~dg~~l~~~~~  399 (741)
T 2ecf_A          379 WSVDELLAVDEKAGLAYFRAG  399 (741)
T ss_dssp             SCEEEEEEEETTTTEEEEEEC
T ss_pred             eEEEeEeEEeCCCCEEEEEEe
Confidence            678887 59999987755443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=1.2e-22  Score=228.60  Aligned_cols=299  Identities=11%  Similarity=0.086  Sum_probs=226.2

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEc--ccCCccccccccCCCCCCCCcccccC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDM--AKLGQQAVSSGLQGENDTTPREDIIG  406 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl--~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (704)
                      ...+.+++...... ..++..+. .+.+++|||||++|++++.|+.|.+||+  .+                        
T Consensus       158 d~~V~v~D~~t~~~-~~~i~~g~-~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t------------------------  211 (543)
T 1nir_A          158 AGQIALVDGDSKKI-VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKE------------------------  211 (543)
T ss_dssp             GTEEEEEETTTCCE-EEEEECST-TEEEEEECTTSCEEEEEETTSEEEEEETTSSS------------------------
T ss_pred             CCeEEEEECCCceE-EEEEecCc-ccceEEECCCCCEEEEECCCCeEEEEECcCCC------------------------
Confidence            45677776554433 23333232 3999999999999999999999999998  33                        


Q ss_pred             CCCCccceeeccCCccCeEEEEEcC----CCCEEEEEe-CCCeEEEEeCCCCceeEEeecC-----------CcCeeEEE
Q 005277          407 PNGRKRSYTLYQGHSGPVYSASFSP----LGDFILSSS-ADTTIRLWSTKLNANLVCYKGH-----------NYPVWDVQ  470 (704)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp----~~~~l~s~s-~Dg~I~lwd~~~~~~~~~~~~h-----------~~~V~~v~  470 (704)
                          ......+. +...+.+++|+|    ++++|++++ .+++|.+||..+++++..+..+           ...+.++.
T Consensus       212 ----~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~  286 (543)
T 1nir_A          212 ----PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII  286 (543)
T ss_dssp             ----CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred             ----CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEE
Confidence                12223333 334579999999    999999887 4899999999999998887642           23688999


Q ss_pred             EcCCCCE-EEEEeCCCeEEEEECCCCceeE--EeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeec-
Q 005277          471 FNPQGHY-FASSSHDRTARIWSMDRIQPLR--IMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIG-  545 (704)
Q Consensus       471 ~sp~~~~-l~sgs~dg~i~lwd~~~~~~~~--~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~-  545 (704)
                      ++|++.. +++...++.|.+||+.+.+.+.  .+ .+...+..+.|+|+++++++++ .+++|.+||+.+++++..+.. 
T Consensus       287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g  365 (543)
T 1nir_A          287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG  365 (543)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence            9997655 5666788999999998766544  33 3556788999999999887665 588999999999999888764 


Q ss_pred             ---CCCCEEEEEEecC-CCEEEEEe-CCCeEEEEeCCC-------CeeeeeecCCCceeeeeeeeeeehccccccccccc
Q 005277          546 ---HRSMILSLAMSPD-GRYMASGD-EDGTIMMWDLAS-------GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDK  613 (704)
Q Consensus       546 ---h~~~i~~l~~spd-g~~l~sg~-~dg~I~iwdl~~-------~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~  613 (704)
                         |.+....+ ++|+ |..++++. .|++|.+||+.+       ++++.++.+|.+.+..+.+                
T Consensus       366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~----------------  428 (543)
T 1nir_A          366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT----------------  428 (543)
T ss_dssp             SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC----------------
T ss_pred             CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEc----------------
Confidence               55444333 5777 66667765 689999999998       8999999999888888888                


Q ss_pred             cccceeeeeeeEEeecccCCCCCEEEEEe-------CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEE
Q 005277          614 VSTGFLFYSLTIIYFGCASCEGSLLASGS-------ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL  686 (704)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~s~~g~~lasgs-------~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l  686 (704)
                                        +|+|++|++++       .+++|.|||+.+.+.......      ......+..+...|..+
T Consensus       429 ------------------~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~------v~~~~~~~~~~~~~~~~  484 (543)
T 1nir_A          429 ------------------HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP------IAEWADLGEGAKRVVQP  484 (543)
T ss_dssp             ------------------CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC------HHHHHCCCSSCCEEEEE
T ss_pred             ------------------CCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEee------chhhcccCCCCCceEec
Confidence                              99999999987       378999999998765311100      00011234556789999


Q ss_pred             EEccCCcEEEEeec
Q 005277          687 QFSRRNLLFAAGAL  700 (704)
Q Consensus       687 ~fs~~g~~La~gs~  700 (704)
                      .|+|+|..|.++..
T Consensus       485 ~~~~~g~~~~~s~~  498 (543)
T 1nir_A          485 EYNKRGDEVWFSVW  498 (543)
T ss_dssp             EECSSSSEEEEEEE
T ss_pred             cCCCCCCEEEEEee
Confidence            99999999987754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=2.1e-22  Score=213.13  Aligned_cols=273  Identities=10%  Similarity=0.037  Sum_probs=213.1

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeC-------CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277          349 NTHNGLNCASISQDGSLVAGGFS-------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~-------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (704)
                      .....+..++|+|+|+++++++.       ++.|.+||..+..                            ....+. +.
T Consensus        38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~----------------------------~~~~~~-~~   88 (353)
T 3vgz_A           38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE----------------------------VTQAIH-ND   88 (353)
T ss_dssp             EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC----------------------------EEEEEE-ES
T ss_pred             hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe----------------------------EEEEEe-cC
Confidence            44567899999999998888874       5679999987522                            111111 12


Q ss_pred             cCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcC---------eeEEEEcCCCCEEEEEe--CCCeEEE
Q 005277          422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYP---------VWDVQFNPQGHYFASSS--HDRTARI  489 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---------V~~v~~sp~~~~l~sgs--~dg~i~l  489 (704)
                      ..+.+++|+|++++++ ++..++.|.+||..+++.+..+..+...         +.++.|+|+++++++++  .++.|.+
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV  168 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence            3467899999999665 5566799999999999988887765422         68899999999877776  4789999


Q ss_pred             EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec----CCCCEEEEEEecCCCEEEEE
Q 005277          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG----HRSMILSLAMSPDGRYMASG  565 (704)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~----h~~~i~~l~~spdg~~l~sg  565 (704)
                      ||..+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.+++.+..+..    +...+.+++|+|+|++++++
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  248 (353)
T 3vgz_A          169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT  248 (353)
T ss_dssp             EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred             EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence            99999998888876666789999999999999999999999999999998877764    55678899999999987776


Q ss_pred             eC-CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-C
Q 005277          566 DE-DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-A  643 (704)
Q Consensus       566 ~~-dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~  643 (704)
                      +. ++.|.+||+.+++.+..+.....  ..+.|                                  +++|+++++++ .
T Consensus       249 ~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~----------------------------------s~dg~~l~v~~~~  292 (353)
T 3vgz_A          249 DSKAAEVLVVDTRNGNILAKVAAPES--LAVLF----------------------------------NPARNEAYVTHRQ  292 (353)
T ss_dssp             ESSSSEEEEEETTTCCEEEEEECSSC--CCEEE----------------------------------ETTTTEEEEEETT
T ss_pred             eCCCCEEEEEECCCCcEEEEEEcCCC--ceEEE----------------------------------CCCCCEEEEEECC
Confidence            65 49999999999988877764432  45666                                  89998665554 7


Q ss_pred             CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       644 Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      ++.|.+||..+++..               ..+.. ...+.+++|+|+|++|+++..++
T Consensus       293 ~~~v~~~d~~~~~~~---------------~~~~~-~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          293 AGKVSVIDAKSYKVV---------------KTFDT-PTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             TTEEEEEETTTTEEE---------------EEEEC-CSEEEEEEECTTSCEEEEEEECC
T ss_pred             CCeEEEEECCCCeEE---------------EEEec-CCCCCeEEEcCCCCEEEEEEccc
Confidence            899999999886543               22222 23578999999999777766553

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=5.4e-22  Score=208.61  Aligned_cols=290  Identities=9%  Similarity=0.113  Sum_probs=200.2

Q ss_pred             cCeEeecCCC-CCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277          329 RNRVHLSSAA-LPSVSFYTFINTHNGLNCASISQDGSLVAGGFSD-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (704)
Q Consensus       329 ~~~~~l~~~~-~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~d-g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (704)
                      ...+.+|... ...........+...+.+++|+|+|++|++++.+ +.|.+|++....                      
T Consensus        14 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~----------------------   71 (343)
T 1ri6_A           14 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD----------------------   71 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT----------------------
T ss_pred             CCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC----------------------
Confidence            3466777543 2233344456778889999999999988888886 999999987210                      


Q ss_pred             CCCCccceeeccCCccCeEEEEEcCCCCEEEEEe-CCCeEEEEeCC---CCceeEEeecCCcCeeEEEEcCCCCEEEEEe
Q 005277          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS-ADTTIRLWSTK---LNANLVCYKGHNYPVWDVQFNPQGHYFASSS  482 (704)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~I~lwd~~---~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs  482 (704)
                        +.......+..+. .+.+++|+|++++|++++ .++.|.+||+.   .......+..+ ..+.+++|+|+++++++++
T Consensus        72 --~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~  147 (343)
T 1ri6_A           72 --GALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPA  147 (343)
T ss_dssp             --CCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEE
T ss_pred             --CceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEec
Confidence              0111222233333 788999999999887665 48899999994   33344444433 4688999999999888887


Q ss_pred             -CCCeEEEEECCC-CceeE----Eec-cCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCC--CcE--EEEee----cC
Q 005277          483 -HDRTARIWSMDR-IQPLR----IMA-GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS--GEC--VRIFI----GH  546 (704)
Q Consensus       483 -~dg~i~lwd~~~-~~~~~----~~~-~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~--~~~--~~~~~----~h  546 (704)
                       .++.|.+||+.+ ++...    .+. .....+.+++|+|+++++++++ .++.|.+||+..  +..  ...+.    ++
T Consensus       148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~  227 (343)
T 1ri6_A          148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF  227 (343)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred             CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence             899999999987 54432    222 2345788999999999876655 789999999953  433  22222    11


Q ss_pred             --CCCEEEEEEecCCCEEEE-EeCCCeEEEEeCC--C--CeeeeeecCCCceeeeeeeeeeehcccccccccccccccee
Q 005277          547 --RSMILSLAMSPDGRYMAS-GDEDGTIMMWDLA--S--GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFL  619 (704)
Q Consensus       547 --~~~i~~l~~spdg~~l~s-g~~dg~I~iwdl~--~--~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~  619 (704)
                        ...+.+++|+|+|++|++ +..++.|.+||+.  +  .+.+..+..+.. +..+.|                      
T Consensus       228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~----------------------  284 (343)
T 1ri6_A          228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNV----------------------  284 (343)
T ss_dssp             CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEE----------------------
T ss_pred             cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEE----------------------
Confidence              235778999999998875 4578999999998  2  344555554444 778888                      


Q ss_pred             eeeeeEEeecccCCCCCEEEEEe-CCCcEEEEeCC--CCccccccccccCccccccccccCCCCcCeEEEEEccCCc
Q 005277          620 FYSLTIIYFGCASCEGSLLASGS-ADCTVKLWDVT--TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL  693 (704)
Q Consensus       620 ~~~~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~  693 (704)
                                  +|+|++|++++ .++.|.+|++.  ++..             ..+..++.. ....+++|.++..
T Consensus       285 ------------s~dg~~l~~~~~~~~~v~v~~~d~~~g~~-------------~~~~~~~~g-~~p~~i~~~~~~~  335 (343)
T 1ri6_A          285 ------------DHSGKYLIAAGQKSHHISVYEIVGEQGLL-------------HEKGRYAVG-QGPMWVVVNAHEG  335 (343)
T ss_dssp             ------------CTTSSEEEEECTTTCEEEEEEEETTTTEE-------------EEEEEEECS-SSCCEEEEEEEC-
T ss_pred             ------------CCCCCEEEEecCCCCeEEEEEEcCCCcee-------------eEccccccC-CCCeeEEEEcccC
Confidence                        99999888877 68999999665  3321             223344332 3455677776543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=8.8e-23  Score=239.15  Aligned_cols=270  Identities=14%  Similarity=0.129  Sum_probs=207.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (704)
                      .|.+++|||||++|++++. +.|.+||+.+...                          .....+..|...+.+++|+||
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~--------------------------~~~~~l~~~~~~~~~~~~SPD  162 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK--------------------------AAVRQLTHGEGFATDAKLSPK  162 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCST--------------------------TSCCBCCCSSSCEEEEEECTT
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCc--------------------------ceEEEcccCCcccccccCCCC
Confidence            4789999999999999986 9999999875200                          012334567788999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcC----------------eeEEEEcCCCCEEEEEeCCC-----------
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYP----------------VWDVQFNPQGHYFASSSHDR-----------  485 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~----------------V~~v~~sp~~~~l~sgs~dg-----------  485 (704)
                      |++|+.++. +.|++||+.+++.......+...                +.+++|+|+|++|++++.|+           
T Consensus       163 G~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~  241 (741)
T 2ecf_A          163 GGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEV  241 (741)
T ss_dssp             SSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCC
Confidence            999998874 69999999987766554444332                47899999999999998765           


Q ss_pred             ----------------------eEEEEECCC-CceeEEec--cCCCCeeEEEEcCCCCEEEEEEC-----CCcEEEEeCC
Q 005277          486 ----------------------TARIWSMDR-IQPLRIMA--GHLSDVDCVRWHINCNYIATGSS-----DKTVRLWDVS  535 (704)
Q Consensus       486 ----------------------~i~lwd~~~-~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~-----dg~I~iwd~~  535 (704)
                                            .|.+||+.+ ++......  .|...+..++| |+|++|++++.     +..|++||+.
T Consensus       242 ~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~  320 (741)
T 2ecf_A          242 YADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA  320 (741)
T ss_dssp             CSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT
T ss_pred             CCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC
Confidence                                  889999988 77665543  36778999999 99999998764     5679999999


Q ss_pred             CCcEEEEeecCCC----CEEEEEEecCCCEEEEEeCCCeEEEEeCC-CCeeeeeecCCCceeeee-eeeeeehccccccc
Q 005277          536 SGECVRIFIGHRS----MILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTL-AYRFLLLVTNAYLK  609 (704)
Q Consensus       536 ~~~~~~~~~~h~~----~i~~l~~spdg~~l~sg~~dg~I~iwdl~-~~~~~~~~~~h~~~V~sl-~~~~~~~~~~~~~~  609 (704)
                      ++++...+..+..    .+.+++|+|||+++++++.||.++||.+. .+. ...+..|...+.++ .|            
T Consensus       321 ~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~------------  387 (741)
T 2ecf_A          321 SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAV------------  387 (741)
T ss_dssp             TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEE------------
T ss_pred             CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEE------------
Confidence            9998877766553    45689999999999999999988888765 344 77777787778776 47            


Q ss_pred             cccccccceeeeeeeEEeecccCCCCCEEE-EEeCCC--cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEE
Q 005277          610 ISDKVSTGFLFYSLTIIYFGCASCEGSLLA-SGSADC--TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL  686 (704)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~la-sgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l  686 (704)
                                            +++|+.|+ +++.++  .++||++.....              .+..+.. ...+..+
T Consensus       388 ----------------------s~dg~~l~~~~~~~~~~~~~l~~~~~~g~--------------~~~~l~~-~~~~~~~  430 (741)
T 2ecf_A          388 ----------------------DEKAGLAYFRAGIESARESQIYAVPLQGG--------------QPQRLSK-APGMHSA  430 (741)
T ss_dssp             ----------------------ETTTTEEEEEECSSCTTCBEEEEEETTCC--------------CCEECCC-SCSEEEE
T ss_pred             ----------------------eCCCCEEEEEEeCCCCceEEEEEEEcCCC--------------Ceeeccc-CCCceEE
Confidence                                  99998775 555555  899999864221              1122222 4568899


Q ss_pred             EEccCCcEEEEeecC
Q 005277          687 QFSRRNLLFAAGALS  701 (704)
Q Consensus       687 ~fs~~g~~La~gs~d  701 (704)
                      +|||||..|+....+
T Consensus       431 ~~spdg~~l~~~~~~  445 (741)
T 2ecf_A          431 SFARNASVYVDSWSN  445 (741)
T ss_dssp             EECTTSSEEEEEEEE
T ss_pred             EECCCCCEEEEEecC
Confidence            999999988876543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=1.9e-22  Score=227.01  Aligned_cols=267  Identities=11%  Similarity=0.109  Sum_probs=210.2

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc-CCccCeEEEEEcCCCCEE
Q 005277          358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSGPVYSASFSPLGDFI  436 (704)
Q Consensus       358 ~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l  436 (704)
                      +|+|++.++++++.|++|.+||..+.                            .....+. +|.  +.+++|+|++++|
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~----------------------------~~~~~i~~g~~--~~~v~~spdg~~l  193 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSK----------------------------KIVKVIDTGYA--VHISRMSASGRYL  193 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTC----------------------------CEEEEEECSTT--EEEEEECTTSCEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCc----------------------------eEEEEEecCcc--cceEEECCCCCEE
Confidence            37889999999999999999998752                            2233333 343  8899999999999


Q ss_pred             EEEeCCCeEEEEeC--CCCceeEEeecCCcCeeEEEEcC----CCCEEEEEe-CCCeEEEEECCCCceeEEeccC-----
Q 005277          437 LSSSADTTIRLWST--KLNANLVCYKGHNYPVWDVQFNP----QGHYFASSS-HDRTARIWSMDRIQPLRIMAGH-----  504 (704)
Q Consensus       437 ~s~s~Dg~I~lwd~--~~~~~~~~~~~h~~~V~~v~~sp----~~~~l~sgs-~dg~i~lwd~~~~~~~~~~~~~-----  504 (704)
                      ++++.|++|++||+  .+++.+..+.. ...+..++|+|    +|+++++++ .+++|.+||..+.+++..+..+     
T Consensus       194 ~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~  272 (543)
T 1nir_A          194 LVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD  272 (543)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS
T ss_pred             EEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC
Confidence            99999999999999  78888888874 45679999999    999999988 5899999999999998887642     


Q ss_pred             ------CCCeeEEEEcCCCCE-EEEEECCCcEEEEeCCCCcEEE--EeecCCCCEEEEEEecCCCEEEEE-eCCCeEEEE
Q 005277          505 ------LSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVR--IFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMW  574 (704)
Q Consensus       505 ------~~~V~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~--~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iw  574 (704)
                            ...+.++.++|++.. +++...++.|.+||+.+++.+.  .+ .+...+.+++|+|+|++|+++ ..+++|.+|
T Consensus       273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~  351 (543)
T 1nir_A          273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVI  351 (543)
T ss_dssp             SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEE
Confidence                  236889999997655 4556678999999998866543  33 456678899999999987655 468999999


Q ss_pred             eCCCCeeeeeecC----CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC-CCEEEEEe-CCCcEE
Q 005277          575 DLASGRCVTPLMG----HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE-GSLLASGS-ADCTVK  648 (704)
Q Consensus       575 dl~~~~~~~~~~~----h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~lasgs-~Dg~V~  648 (704)
                      |+.+++++..+..    |.+....+ +                                  +|+ +.+++++. .|++|.
T Consensus       352 D~~tg~l~~~i~~g~~ph~g~g~~~-~----------------------------------~p~~g~~~~s~~~~d~~V~  396 (543)
T 1nir_A          352 DSKDRRLSALVDVGKTPHPGRGANF-V----------------------------------HPKYGPVWSTSHLGDGSIS  396 (543)
T ss_dssp             ETTTTEEEEEEECSSSBCCTTCEEE-E----------------------------------ETTTEEEEEEEBSSSSEEE
T ss_pred             ECCCCeEEEeeccCCCCCCCCCccc-C----------------------------------CCCCccEEEeccCCCceEE
Confidence            9999998887764    44322222 2                                  565 66777775 689999


Q ss_pred             EEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          649 LWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       649 iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                      |||+.+...        ....++.+.++..+...+..+.|+|+++.|++++
T Consensus       397 v~d~~~~~~--------~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          397 LIGTDPKNH--------PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             EEECCTTTC--------TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             EEEeCCCCC--------chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence            999987321        0112356778888888899999999999999987

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=6.4e-23  Score=239.53  Aligned_cols=271  Identities=10%  Similarity=0.091  Sum_probs=199.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc---CeEEEEE
Q 005277          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG---PVYSASF  429 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~  429 (704)
                      .+.+++|+|||+++++ +.||.|++||+.+..                            ....+.+|..   .|.+++|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~----------------------------~~~~~~~~~~~~~~v~~~~~   68 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT----------------------------STVLIEGKKIESLRAIRYEI   68 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC----------------------------CEEEECTTTTTTTTCSEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCc----------------------------EEEEeccccccccccceEEE
Confidence            3567899999998876 689999999987622                            2233444543   4899999


Q ss_pred             cCCCCEEEEEeCC---------CeEEEEeCCCCceeEEee---cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277          430 SPLGDFILSSSAD---------TTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (704)
Q Consensus       430 sp~~~~l~s~s~D---------g~I~lwd~~~~~~~~~~~---~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~  497 (704)
                      ||||++|++++.+         +.|.+||+.+++. ..+.   +|...+..++|+|+|+.+++++. +.|++||+.+++.
T Consensus        69 SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~  146 (723)
T 1xfd_A           69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA  146 (723)
T ss_dssp             CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC
T ss_pred             CCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce
Confidence            9999999998764         7889999998876 3333   34455889999999999999886 8999999999887


Q ss_pred             eEEeccCCCCe------------------eEEEEcCCCCEEEEEECCC--------------------------------
Q 005277          498 LRIMAGHLSDV------------------DCVRWHINCNYIATGSSDK--------------------------------  527 (704)
Q Consensus       498 ~~~~~~~~~~V------------------~~v~~~p~~~~l~tgs~dg--------------------------------  527 (704)
                      .+....+...+                  .+++|+|+|++|++++.++                                
T Consensus       147 ~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  226 (723)
T 1xfd_A          147 IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENP  226 (723)
T ss_dssp             EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCC
T ss_pred             EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCC
Confidence            77766544433                  7899999999999987553                                


Q ss_pred             --cEEEEeCCCCcEEEEeecC------CCCEEEEEEecCCCEEEEEeC----CCeEEEEeCCCCeeeeeecC-CCceee-
Q 005277          528 --TVRLWDVSSGECVRIFIGH------RSMILSLAMSPDGRYMASGDE----DGTIMMWDLASGRCVTPLMG-HTSCVW-  593 (704)
Q Consensus       528 --~I~iwd~~~~~~~~~~~~h------~~~i~~l~~spdg~~l~sg~~----dg~I~iwdl~~~~~~~~~~~-h~~~V~-  593 (704)
                        .|++||+.+++....+..+      ...+.+++|||||++|++...    +..|++||+.+++....+.. +...+. 
T Consensus       227 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~  306 (723)
T 1xfd_A          227 SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHR  306 (723)
T ss_dssp             EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred             eeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEec
Confidence              7999999988865666554      567899999999999877653    35799999999887665543 333332 


Q ss_pred             ---eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE--EeCCC------cEEEEeC-CCCcccccc
Q 005277          594 ---TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS--GSADC------TVKLWDV-TTSTKVLKT  661 (704)
Q Consensus       594 ---sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las--gs~Dg------~V~iWd~-~~~~~~~~~  661 (704)
                         .+.|                                  +|+|+.|+.  +..+|      .|.+||+ ..+..    
T Consensus       307 ~~~~~~~----------------------------------spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~----  348 (723)
T 1xfd_A          307 QNEEPVF----------------------------------SKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN----  348 (723)
T ss_dssp             CCCCCEE----------------------------------CTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS----
T ss_pred             cCCCceE----------------------------------cCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc----
Confidence               6677                                  999997764  45667      4666773 33220    


Q ss_pred             ccccCccccccccccCCCCcCeEE-EEEccCCcEEEEeecC
Q 005277          662 EEKSGTNRLRSLKTLPTKSTPVYS-LQFSRRNLLFAAGALS  701 (704)
Q Consensus       662 ~~~~~~~~~~~l~~~~~~~~~V~~-l~fs~~g~~La~gs~d  701 (704)
                               .....+......+.. ++|+|+|+.|+..+.+
T Consensus       349 ---------~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~  380 (723)
T 1xfd_A          349 ---------DNIQSITSGDWDVTKILAYDEKGNKIYFLSTE  380 (723)
T ss_dssp             ---------CCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred             ---------cceeEeecCCeEEEeeeEEcCCCCEEEEEEcC
Confidence                     001122223344554 6999999999876655

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=4.9e-22  Score=203.64  Aligned_cols=250  Identities=16%  Similarity=0.134  Sum_probs=191.6

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEccc-CCccccccccCCCCCCCCcccccCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK-LGQQAVSSGLQGENDTTPREDIIGP  407 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~  407 (704)
                      ...+++|+.......  .+..|...|.+++|+|||++|++++ ++.|.+||+.+ ...                      
T Consensus        21 ~~~i~~~d~~~~~~~--~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~----------------------   75 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMR--VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP----------------------   75 (297)
T ss_dssp             CEEEEEEETTTTEEE--EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC----------------------
T ss_pred             ceeEEEEeCCCCcee--eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc----------------------
Confidence            346777765544333  4566888999999999999999986 88999999875 221                      


Q ss_pred             CCCccceeeccCC-ccCeEEEEEcCCCCEEEEEe--CCCeEEEEeC--CCCceeEEeecCCcCeeEEEEcCCCCEEE-EE
Q 005277          408 NGRKRSYTLYQGH-SGPVYSASFSPLGDFILSSS--ADTTIRLWST--KLNANLVCYKGHNYPVWDVQFNPQGHYFA-SS  481 (704)
Q Consensus       408 ~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~s--~Dg~I~lwd~--~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-sg  481 (704)
                            .....+| ...|.+++|+|++++|++++  .++.+.||.+  .++. ...+..+ ..+..++|+|++++++ ++
T Consensus        76 ------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~  147 (297)
T 2ojh_A           76 ------EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCG  147 (297)
T ss_dssp             ------EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEE
T ss_pred             ------eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEE
Confidence                  1222233 46788999999999999988  3345555554  4443 4444433 3588999999999887 77


Q ss_pred             eCCCeEEEEECCC-CceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCC-CCcEEEEeecCCCCEEEEEEecC
Q 005277          482 SHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPD  558 (704)
Q Consensus       482 s~dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~-~~~~~~~~~~h~~~i~~l~~spd  558 (704)
                      +.++.+++|+++. ......+..+...+.+++|+|++++|++++ .++.+++|++. .+..+..+..|...+.+++|+|+
T Consensus       148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~d  227 (297)
T 2ojh_A          148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPS  227 (297)
T ss_dssp             EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTT
T ss_pred             CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCC
Confidence            8899999999642 234456667888999999999999888776 58999999986 56667778888888999999999


Q ss_pred             CCEEEEEeCC-----------CeEEEEeCCCCee--eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277          559 GRYMASGDED-----------GTIMMWDLASGRC--VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI  625 (704)
Q Consensus       559 g~~l~sg~~d-----------g~I~iwdl~~~~~--~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (704)
                      |++|++++.+           +.|.+||+.+++.  +..+.+|...+.++.|                            
T Consensus       228 g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~----------------------------  279 (297)
T 2ojh_A          228 GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNW----------------------------  279 (297)
T ss_dssp             SSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCB----------------------------
T ss_pred             CCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceE----------------------------
Confidence            9999988765           5699999988765  4444578888999999                            


Q ss_pred             EeecccCCCCCEEEEEeCCC
Q 005277          626 IYFGCASCEGSLLASGSADC  645 (704)
Q Consensus       626 ~~~~~~s~~g~~lasgs~Dg  645 (704)
                            +|+++.|++++.+.
T Consensus       280 ------spdg~~l~~~~~~~  293 (297)
T 2ojh_A          280 ------SPDGDEFAYVRYFP  293 (297)
T ss_dssp             ------CTTSSEEEEEEECC
T ss_pred             ------CCCCCEEEEEEecc
Confidence                  99999998887654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=9.9e-22  Score=206.34  Aligned_cols=274  Identities=12%  Similarity=0.081  Sum_probs=193.3

Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE
Q 005277          358 SISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI  436 (704)
Q Consensus       358 ~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l  436 (704)
                      .|.+++. .++++..++.|.+||+.+..                            .......+...+ +++|+|+++++
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~----------------------------~~~~~~~~~~~~-~~~~s~dg~~l   54 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLE----------------------------ILNQITLGYDFV-DTAITSDCSNV   54 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCC----------------------------EEEEEECCCCEE-EEEECSSSCEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccc----------------------------eeeeEEccCCcc-eEEEcCCCCEE
Confidence            4555544 57778889999999987521                            222223344556 99999999977


Q ss_pred             EEEeC-CCeEEEEeCCCCce-eEEeecCCcCeeEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeEEeccCCCCeeEE
Q 005277          437 LSSSA-DTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDR---TARIWSMDRIQPLRIMAGHLSDVDCV  511 (704)
Q Consensus       437 ~s~s~-Dg~I~lwd~~~~~~-~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg---~i~lwd~~~~~~~~~~~~~~~~V~~v  511 (704)
                      ++++. ++.|.+||+.+++. ...+..+..+..+++|+|+|++++++..++   .|.+||+.+++.+..+..+ ....++
T Consensus        55 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~  133 (331)
T 3u4y_A           55 VVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGI  133 (331)
T ss_dssp             EEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEE
T ss_pred             EEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccce
Confidence            76655 89999999999887 777777777776699999999999655553   8999999999888877643 457899


Q ss_pred             EEcCCCCEEEEE-ECCCc-EEEEeCCCCcEE----EEeecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEeCCCCee---
Q 005277          512 RWHINCNYIATG-SSDKT-VRLWDVSSGECV----RIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGRC---  581 (704)
Q Consensus       512 ~~~p~~~~l~tg-s~dg~-I~iwd~~~~~~~----~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iwdl~~~~~---  581 (704)
                      +|+|+|++++++ ..++. |.+|++.....+    .........+.+++|+|+|++++++ ..++.|.+||+.+++.   
T Consensus       134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~  213 (331)
T 3u4y_A          134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITL  213 (331)
T ss_dssp             EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred             EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccce
Confidence            999999866554 55688 999998754332    1222345568999999999966554 4689999999999887   


Q ss_pred             eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCcEEEEeCCCCccccc
Q 005277          582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCTVKLWDVTTSTKVLK  660 (704)
Q Consensus       582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~~~~~~~~  660 (704)
                      +..+..+ ..+..+.|                                  +|+|+++++++ .++.|.+||+.+++....
T Consensus       214 ~~~~~~~-~~~~~~~~----------------------------------spdg~~l~v~~~~~~~i~~~d~~~~~~~~~  258 (331)
T 3u4y_A          214 LNAVGTN-NLPGTIVV----------------------------------SRDGSTVYVLTESTVDVFNFNQLSGTLSFV  258 (331)
T ss_dssp             EEEEECS-SCCCCEEE----------------------------------CTTSSEEEEECSSEEEEEEEETTTTEEEEE
T ss_pred             eeeccCC-CCCceEEE----------------------------------CCCCCEEEEEEcCCCEEEEEECCCCceeee
Confidence            6666643 55667777                                  99999775554 578999999988754110


Q ss_pred             cccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          661 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       661 ~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      ....      ..+...+.....+..++|+|+|.+|++++.++
T Consensus       259 ~~~~------~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  294 (331)
T 3u4y_A          259 KSFG------HGLLIDPRPLFGANQMALNKTETKLFISANIS  294 (331)
T ss_dssp             EEEE------CCCCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred             cccc------cccccCCCCcccccceEECCCCCEEEEecCCC
Confidence            0000      00000011111235689999999887766554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=6.9e-22  Score=207.82  Aligned_cols=263  Identities=13%  Similarity=0.188  Sum_probs=184.9

Q ss_pred             CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCC-
Q 005277          364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD-  442 (704)
Q Consensus       364 ~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D-  442 (704)
                      .++++++.|+.|++|++...+.                         ..... ...|...+.+++|+|++++|++++.+ 
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~-------------------------~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~   59 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGA-------------------------LTLTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPE   59 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSC-------------------------EEEEE-EEECSSCCCCEEECTTSSEEEEEETTT
T ss_pred             EEEEeCCCCCeEEEEEECCCCc-------------------------EEEee-eEecCCCCceEEECCCCCEEEEeecCC
Confidence            3455557899999999863110                         11111 23466788999999999999988876 


Q ss_pred             CeEEEEeCC--CCc--eeEEeecCCcCeeEEEEcCCCCEEEEEeC-CCeEEEEECC---CCceeEEeccCCCCeeEEEEc
Q 005277          443 TTIRLWSTK--LNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMD---RIQPLRIMAGHLSDVDCVRWH  514 (704)
Q Consensus       443 g~I~lwd~~--~~~--~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg~i~lwd~~---~~~~~~~~~~~~~~V~~v~~~  514 (704)
                      +.|.+|++.  ++.  .+..+..+. .+..++|+|+++++++++. ++.|.+||++   ....+..+.. ...+.+++|+
T Consensus        60 ~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s  137 (343)
T 1ri6_A           60 FRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANIS  137 (343)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEEC
T ss_pred             CeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEEC
Confidence            999999998  444  334455444 7889999999998877764 8899999994   3344445443 3568999999


Q ss_pred             CCCCEEEEEE-CCCcEEEEeCCC-CcEEE----Eeec-CCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCC--Cee--e
Q 005277          515 INCNYIATGS-SDKTVRLWDVSS-GECVR----IFIG-HRSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS--GRC--V  582 (704)
Q Consensus       515 p~~~~l~tgs-~dg~I~iwd~~~-~~~~~----~~~~-h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~--~~~--~  582 (704)
                      |+++++++++ .++.|++||+.+ ++...    .... ....+.+++|+|+|++|++++ .++.|.+||+..  ++.  .
T Consensus       138 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~  217 (343)
T 1ri6_A          138 PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV  217 (343)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred             CCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence            9999988887 899999999987 65432    2222 345788999999999776554 889999999953  432  2


Q ss_pred             eeec----CC--CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEE-EEeCCCcEEEEeCCCC
Q 005277          583 TPLM----GH--TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA-SGSADCTVKLWDVTTS  655 (704)
Q Consensus       583 ~~~~----~h--~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~la-sgs~Dg~V~iWd~~~~  655 (704)
                      ..+.    ++  ...+..+.|                                  +|+|++|+ ++..++.|.+|++...
T Consensus       218 ~~~~~~~~~~~~~~~~~~i~~----------------------------------s~dg~~l~v~~~~~~~i~v~d~~~~  263 (343)
T 1ri6_A          218 QTLDMMPENFSDTRWAADIHI----------------------------------TPDGRHLYACDRTASLITVFSVSED  263 (343)
T ss_dssp             EEEECSCTTCCSCCCEEEEEE----------------------------------CTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             eeccccCccccccCCccceEE----------------------------------CCCCCEEEEEecCCCEEEEEEEcCC
Confidence            2221    11  123445666                                  99998776 5557999999999742


Q ss_pred             ccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277          656 TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       656 ~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~  700 (704)
                      ...           ...+..++.+.. +.+++|+|+|.+|++++.
T Consensus       264 ~~~-----------~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~  296 (343)
T 1ri6_A          264 GSV-----------LSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQ  296 (343)
T ss_dssp             SCC-----------EEEEEEEECSSS-CCCEEECTTSSEEEEECT
T ss_pred             CCc-----------eEEeeeecCCCc-cceEEECCCCCEEEEecC
Confidence            110           122333433433 889999999998887774

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=5e-22  Score=231.97  Aligned_cols=299  Identities=14%  Similarity=0.104  Sum_probs=210.3

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCC---CEEEEEEcCCCCEEEEEeCC---------CcEEEEEcccCCccccccccCCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHN---GLNCASISQDGSLVAGGFSD---------SSLKVWDMAKLGQQAVSSGLQGEND  397 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~---~V~~~~fs~dg~~lasg~~d---------g~I~iwdl~~~~~~~~~~~~~~~~~  397 (704)
                      ..+++|+........ .+..|..   .|.+++|||||++||+++.+         +.|.+||+.+...            
T Consensus        37 g~i~~~d~~~g~~~~-~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------  103 (723)
T 1xfd_A           37 GTVRLWNVETNTSTV-LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP------------  103 (723)
T ss_dssp             SCEEEBCGGGCCCEE-EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC------------
T ss_pred             CCEEEEECCCCcEEE-EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce------------
Confidence            367777765443322 2333333   49999999999999999875         7788999876321            


Q ss_pred             CCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCe-----------
Q 005277          398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV-----------  466 (704)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V-----------  466 (704)
                                    .......+|...+.+++|||||+.|+.++. +.|++|++.+++.......+...+           
T Consensus       104 --------------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~  168 (723)
T 1xfd_A          104 --------------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE  168 (723)
T ss_dssp             --------------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred             --------------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence                          111222346666889999999999998886 799999999887776665544333           


Q ss_pred             -------eEEEEcCCCCEEEEEeCCC----------------------------------eEEEEECCCCceeEEeccC-
Q 005277          467 -------WDVQFNPQGHYFASSSHDR----------------------------------TARIWSMDRIQPLRIMAGH-  504 (704)
Q Consensus       467 -------~~v~~sp~~~~l~sgs~dg----------------------------------~i~lwd~~~~~~~~~~~~~-  504 (704)
                             .+++|+|+|++|++++.|+                                  .|++||+.+++....+..+ 
T Consensus       169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~  248 (723)
T 1xfd_A          169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD  248 (723)
T ss_dssp             HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC
T ss_pred             EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc
Confidence                   7899999999999987553                                  8999999988765666544 


Q ss_pred             -----CCCeeEEEEcCCCCEEEEEEC----CCcEEEEeCCCCcEEEEeec-CCCCE----EEEEEecCCCEEEE--EeCC
Q 005277          505 -----LSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGECVRIFIG-HRSMI----LSLAMSPDGRYMAS--GDED  568 (704)
Q Consensus       505 -----~~~V~~v~~~p~~~~l~tgs~----dg~I~iwd~~~~~~~~~~~~-h~~~i----~~l~~spdg~~l~s--g~~d  568 (704)
                           ...+.+++|+|||+++++.+.    +..|++||+.++++...+.. +...+    ..++|+|||+.|+.  +..+
T Consensus       249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  328 (723)
T 1xfd_A          249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ  328 (723)
T ss_dssp             CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred             cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence                 567899999999999877653    35799999999988776644 33433    37899999997775  4566


Q ss_pred             C------eEEEEe-CCCCe--eeeeecCCCceeee-eeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEE
Q 005277          569 G------TIMMWD-LASGR--CVTPLMGHTSCVWT-LAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL  638 (704)
Q Consensus       569 g------~I~iwd-l~~~~--~~~~~~~h~~~V~s-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  638 (704)
                      |      .|.+|| ..++.  +...+..+...+.. +.|                                  +|+|+.|
T Consensus       329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~----------------------------------spdg~~l  374 (723)
T 1xfd_A          329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAY----------------------------------DEKGNKI  374 (723)
T ss_dssp             SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEE----------------------------------ETTTTEE
T ss_pred             CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEE----------------------------------cCCCCEE
Confidence            6      577778 34444  14455443333433 577                                  9999999


Q ss_pred             EEEeCC---CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277          639 ASGSAD---CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       639 asgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~  700 (704)
                      +..+.+   +.++||++......          ....+..-..+...+..++|+|+|+.|+....
T Consensus       375 ~~~~~~~~~~~~~l~~~~~~~~~----------~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          375 YFLSTEDLPRRRQLYSANTVGNF----------NRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             EEEESSSCTTCCEEEEECSSTTC----------CCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             EEEEcCCCCcceEEEEEeCCCCC----------CcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence            766655   88999998754310          00111111114566889999999998887543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=3.1e-22  Score=227.94  Aligned_cols=258  Identities=12%  Similarity=0.031  Sum_probs=197.0

Q ss_pred             CEEEEEEcCCCCEEEEEeC-CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc-cCeEEEEEc
Q 005277          353 GLNCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFS  430 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s  430 (704)
                      .|.+++|+|||+.||+++. ||.++||++.+.                             ....+..|. ..|.+++|+
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-----------------------------~~~~lt~~~~~~~~~~~~s   73 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-----------------------------ETVKLNREPINSVLDPHYG   73 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETT-----------------------------EEEECCSSCCSEECEECTT
T ss_pred             chheeecCCCCCeEEEEEccCCceeEEEEcCC-----------------------------CcEeeecccccccccccCC
Confidence            5899999999999999887 999999997541                             112233444 689999999


Q ss_pred             CCCCEEEEEeC---CCeEEEEeCCC--CceeEEeecCCcCeeEEEEcCCCC--EEEEEeCCCeEEEEECCCCceeEEecc
Q 005277          431 PLGDFILSSSA---DTTIRLWSTKL--NANLVCYKGHNYPVWDVQFNPQGH--YFASSSHDRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       431 p~~~~l~s~s~---Dg~I~lwd~~~--~~~~~~~~~h~~~V~~v~~sp~~~--~l~sgs~dg~i~lwd~~~~~~~~~~~~  503 (704)
                      || +.+++++.   +...++|.+..  ......+..+. .+...+|+|+|+  .+++++. +.+.+||+++++..+....
T Consensus        74 pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~~  150 (582)
T 3o4h_A           74 VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK-PMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELARL  150 (582)
T ss_dssp             CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSC-SBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEEEE
T ss_pred             CC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCC-CceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEeecC
Confidence            99 77777765   45566765543  22222333222 344668888775  3444444 4555999998876665543


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC--eEEEEeCC
Q 005277          504 HLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG--TIMMWDLA  577 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg--~I~iwdl~  577 (704)
                      +.   .+++|+|||++|++++.+    +.|++||+.+++.. .+..|.+.+.+++|||||++|+++..+|  .|++||+.
T Consensus       151 ~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~  226 (582)
T 3o4h_A          151 PG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPR  226 (582)
T ss_dssp             SS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT
T ss_pred             CC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCC
Confidence            33   889999999999988877    78999999988865 5678888999999999999999888888  89999999


Q ss_pred             CCeeeeeecCCCceeeeee--------eeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          578 SGRCVTPLMGHTSCVWTLA--------YRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       578 ~~~~~~~~~~h~~~V~sl~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                      +++.. .+.+|...+..+.        |                                  +|+|.++++++.||++++
T Consensus       227 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------------------spdg~~~~~~~~~g~~~l  271 (582)
T 3o4h_A          227 DGSVE-DLELPSKDFSSYRPTAITWLGY----------------------------------LPDGRLAVVARREGRSAV  271 (582)
T ss_dssp             TCCEE-ECCCSCSHHHHHCCSEEEEEEE----------------------------------CTTSCEEEEEEETTEEEE
T ss_pred             CCcEE-EccCCCcChhhhhhccccceeE----------------------------------cCCCcEEEEEEcCCcEEE
Confidence            98887 7778887777776        6                                  999999999999999999


Q ss_pred             EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      |++  ++..               .   ...+.|.+++|+ +|.++++++.+.
T Consensus       272 ~~~--g~~~---------------~---~~~~~v~~~~~s-dg~~l~~~s~~~  303 (582)
T 3o4h_A          272 FID--GERV---------------E---APQGNHGRVVLW-RGKLVTSHTSLS  303 (582)
T ss_dssp             EET--TEEE---------------C---CCSSEEEEEEEE-TTEEEEEEEETT
T ss_pred             EEE--CCee---------------c---cCCCceEEEEec-CCEEEEEEcCCC
Confidence            999  3321               1   123568899999 999998887764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=7e-22  Score=230.25  Aligned_cols=267  Identities=16%  Similarity=0.155  Sum_probs=201.7

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      ..|.+++|||| ..++.+. ++.|++||+.+.                             ....+..+.+.+.+++|+|
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~-----------------------------~~~~l~~~~~~~~~~~~Sp  130 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLAR-----------------------------KVTYLFDTNEETASLDFSP  130 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTT-----------------------------EEEEEECCTTCCTTCEECT
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCC-----------------------------ceEEccCCcccccCCcCCC
Confidence            56999999999 6666664 599999998752                             1223344667788999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC-----CceeEEeecCCcC--------------eeEEEEcCCCCEEEEEe----------
Q 005277          432 LGDFILSSSADTTIRLWSTKL-----NANLVCYKGHNYP--------------VWDVQFNPQGHYFASSS----------  482 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~-----~~~~~~~~~h~~~--------------V~~v~~sp~~~~l~sgs----------  482 (704)
                      ||++|+++ .|+.|++|++.+     ++.......+...              +.++.|+|+|++|++++          
T Consensus       131 dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~  209 (706)
T 2z3z_A          131 VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTP  209 (706)
T ss_dssp             TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEE
T ss_pred             CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEE
Confidence            99999985 679999999998     7665544444332              48999999999999987          


Q ss_pred             -----------------------CCCeEEEEECCCCceeEEec--cCCCCeeEEEEcCCCCEEEEEECCC-----cEEEE
Q 005277          483 -----------------------HDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDK-----TVRLW  532 (704)
Q Consensus       483 -----------------------~dg~i~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg-----~I~iw  532 (704)
                                             .+..|++||+.+++......  .|...+.+++|+|+|++|++++.++     .|++|
T Consensus       210 ~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~  289 (706)
T 2z3z_A          210 IVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAY  289 (706)
T ss_dssp             EEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred             eeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEE
Confidence                                   45789999999887655443  4667799999999999999988775     89999


Q ss_pred             eCCCCcEEEEee-c-CCC---CEEEEEEec--CCCEEEEEeCCCeEEEEeCC-CCeeeeeecCCCceeee-eeeeeeehc
Q 005277          533 DVSSGECVRIFI-G-HRS---MILSLAMSP--DGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWT-LAYRFLLLV  603 (704)
Q Consensus       533 d~~~~~~~~~~~-~-h~~---~i~~l~~sp--dg~~l~sg~~dg~I~iwdl~-~~~~~~~~~~h~~~V~s-l~~~~~~~~  603 (704)
                      |+.+++....+. . +..   .+.+++|+|  ||+++++++.||.++||++. ++..+..+..|...+.+ +.|      
T Consensus       290 d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~------  363 (706)
T 2z3z_A          290 DAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGF------  363 (706)
T ss_dssp             ETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEE------
T ss_pred             ECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEE------
Confidence            999994333332 2 222   246789999  99999999999999999886 66777788878777776 678      


Q ss_pred             cccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC-CC----cEEEEeCCCCccccccccccCccccccccccCC
Q 005277          604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA-DC----TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT  678 (704)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~-Dg----~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~  678 (704)
                                                  +|+|+.|+.++. ++    .|..||+.++..                ..+ .
T Consensus       364 ----------------------------spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~----------------~~l-~  398 (706)
T 2z3z_A          364 ----------------------------DPKGTRLYFESTEASPLERHFYCIDIKGGKT----------------KDL-T  398 (706)
T ss_dssp             ----------------------------CTTSSEEEEEESSSCTTCBEEEEEETTCCCC----------------EES-C
T ss_pred             ----------------------------cCCCCEEEEEecCCCCceEEEEEEEcCCCCc----------------eec-c
Confidence                                        999987765554 44    566666665431                112 2


Q ss_pred             CCcCeEEEEEccCCcEEEEeecC
Q 005277          679 KSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       679 ~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                      +...+.+++|+|+|.+++.++.+
T Consensus       399 ~~~~~~~~~~spdg~~l~~~~~~  421 (706)
T 2z3z_A          399 PESGMHRTQLSPDGSAIIDIFQS  421 (706)
T ss_dssp             CSSSEEEEEECTTSSEEEEEEEC
T ss_pred             CCCceEEEEECCCCCEEEEEecC
Confidence            45568999999999988877554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=1.3e-21  Score=238.15  Aligned_cols=273  Identities=12%  Similarity=0.131  Sum_probs=221.4

Q ss_pred             EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      ..+.+|...+.++.|+++ .+++++..+|.++||.++...                           .....+..|. .+
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g---------------------------~~~~~l~~~~-~~  247 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG---------------------------KDLRKHTSFT-DY  247 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTS---------------------------CSCEECCCCC-SS
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCC---------------------------CcceEecCCC-Cc
Confidence            344788999999999998 777788889999999876411                           1122333443 46


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec-----------CCcCeeEEEEc-CCCCEEEEEeCCCeEEEEEC
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-----------HNYPVWDVQFN-PQGHYFASSSHDRTARIWSM  492 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~-----------h~~~V~~v~~s-p~~~~l~sgs~dg~i~lwd~  492 (704)
                      ...+|+|+|++|++++ ++.|.+|++.. ..+..+.+           |...+.+++|+ |+|+++++++ ++.+.+|++
T Consensus       248 ~~~~~SpDG~~la~~~-~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~  324 (1045)
T 1k32_A          248 YPRHLNTDGRRILFSK-GGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV  324 (1045)
T ss_dssp             CEEEEEESSSCEEEEE-TTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred             ceeeEcCCCCEEEEEe-CCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence            6789999999988874 89999999954 34445544           34478999999 9999999888 789999999


Q ss_pred             CCCceeEEeccCCC-CeeEEEEcCCCCEEEEEECCCcEE-EEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCe
Q 005277          493 DRIQPLRIMAGHLS-DVDCVRWHINCNYIATGSSDKTVR-LWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (704)
Q Consensus       493 ~~~~~~~~~~~~~~-~V~~v~~~p~~~~l~tgs~dg~I~-iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~  570 (704)
                      ..+.... +..|.. .+.+++|+ +|+.|++++.++.+. +||+.+++.... .+|...+.+++|+|||++|++++.++.
T Consensus       325 ~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~  401 (1045)
T 1k32_A          325 SGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDRFE  401 (1045)
T ss_dssp             TSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEECCCCe
Confidence            8876544 566777 89999999 999999999888898 999988776544 488889999999999999999999999


Q ss_pred             EEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC-----
Q 005277          571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC-----  645 (704)
Q Consensus       571 I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg-----  645 (704)
                      |++||+.+++....+.+|...+.++.|                                  +|+|++|++++.++     
T Consensus       402 v~~~d~~tg~~~~~~~~~~~~v~~~~~----------------------------------SpDG~~la~~~~~~~~~~~  447 (1045)
T 1k32_A          402 IMTVDLETGKPTVIERSREAMITDFTI----------------------------------SDNSRFIAYGFPLKHGETD  447 (1045)
T ss_dssp             EEEEETTTCCEEEEEECSSSCCCCEEE----------------------------------CTTSCEEEEEEEECSSTTC
T ss_pred             EEEEECCCCceEEeccCCCCCccceEE----------------------------------CCCCCeEEEEecCcccccc
Confidence            999999999888877789999999999                                  99999998887654     


Q ss_pred             -----cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          646 -----TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       646 -----~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                           .|++||+.++.                +..+..+...+..++|+|+|+.|++++.++
T Consensus       448 ~~~~~~i~l~d~~~g~----------------~~~l~~~~~~~~~~~~spdG~~l~~~s~~~  493 (1045)
T 1k32_A          448 GYVMQAIHVYDMEGRK----------------IFAATTENSHDYAPAFDADSKNLYYLSYRS  493 (1045)
T ss_dssp             SCCEEEEEEEETTTTE----------------EEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred             CCCCCeEEEEECCCCc----------------EEEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence                 89999998754                223445666788899999999999888754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=2e-20  Score=196.36  Aligned_cols=263  Identities=11%  Similarity=0.066  Sum_probs=187.5

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (704)
                      ...+.+++........ .+..+...+ +++|+|||+++++++. ++.|.+||+.+...                      
T Consensus        19 ~~~v~~~d~~~~~~~~-~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~----------------------   74 (331)
T 3u4y_A           19 LRRISFFSTDTLEILN-QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP----------------------   74 (331)
T ss_dssp             GTEEEEEETTTCCEEE-EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC----------------------
T ss_pred             CCeEEEEeCcccceee-eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce----------------------
Confidence            3466777655443322 223344556 9999999996666655 89999999875211                      


Q ss_pred             CCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE-eC
Q 005277          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT---TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SH  483 (704)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg---~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg-s~  483 (704)
                           ....+..+..++.+++|+|++++|+++..++   .|.+||+.+++.+..+..+. ...+++|+|+|++++++ ..
T Consensus        75 -----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~  148 (331)
T 3u4y_A           75 -----KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRS  148 (331)
T ss_dssp             -----EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEET
T ss_pred             -----eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecC
Confidence                 1233444556666699999999999655553   89999999998888776544 56899999999855544 56


Q ss_pred             CCe-EEEEECCCCcee----EEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcE---EEEeecCCCCEEEEE
Q 005277          484 DRT-ARIWSMDRIQPL----RIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGEC---VRIFIGHRSMILSLA  554 (704)
Q Consensus       484 dg~-i~lwd~~~~~~~----~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~---~~~~~~h~~~i~~l~  554 (704)
                      ++. +.+|+++....+    ...........+++|+|+|+++++++ .++.|++||+.+++.   +..+..+ ..+.+++
T Consensus       149 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~  227 (331)
T 3u4y_A          149 SANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIV  227 (331)
T ss_dssp             TTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEE
T ss_pred             CCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEE
Confidence            688 999999764433    11223445689999999999776655 688999999999988   7777643 6678999


Q ss_pred             EecCCCEEEEEe-CCCeEEEEeCCCCee--eeeecCC----Ccee---eeeeeeeeehccccccccccccccceeeeeee
Q 005277          555 MSPDGRYMASGD-EDGTIMMWDLASGRC--VTPLMGH----TSCV---WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT  624 (704)
Q Consensus       555 ~spdg~~l~sg~-~dg~I~iwdl~~~~~--~~~~~~h----~~~V---~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (704)
                      |+|+|++|++++ .++.|.+||+.+++.  +..+..+    ....   ..+.|                           
T Consensus       228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  280 (331)
T 3u4y_A          228 VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMAL---------------------------  280 (331)
T ss_dssp             ECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEE---------------------------
T ss_pred             ECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEE---------------------------
Confidence            999999776655 578899999999876  3333222    2222   23455                           


Q ss_pred             EEeecccCCCCCEEEEEe-CCCcEEEEeCCCCc
Q 005277          625 IIYFGCASCEGSLLASGS-ADCTVKLWDVTTST  656 (704)
Q Consensus       625 ~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~~~~  656 (704)
                             +|+|++|++++ .++.|.+||+....
T Consensus       281 -------spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          281 -------NKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             -------CTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             -------CCCCCEEEEecCCCCcEEEEEecCCc
Confidence                   99999886555 56799999998754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=3.3e-21  Score=210.99  Aligned_cols=213  Identities=16%  Similarity=0.137  Sum_probs=163.1

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      ..++++++++++.++++|+.+| |+||+.........    ... .   .....     .........|.+.|.+++|+|
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~----~~~-~---~~~~~-----~~~~~~~~~~~~~v~~l~~sp  102 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK----PGD-D---PNKIV-----DKVQGLLVPMKFPIHHLALSC  102 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC----TTC-C---TTCEE-----ECCCCEEECCSSCEEEEEECT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc----ccc-C---ccccc-----ccCccccccCCCcccEEEEcC
Confidence            3578899999999999999988 99998754210000    000 0   00000     000011234678899999999


Q ss_pred             CCCEEE----EEeCCCeEEEEeCCCC--------ce---eEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 005277          432 LGDFIL----SSSADTTIRLWSTKLN--------AN---LVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI  495 (704)
Q Consensus       432 ~~~~l~----s~s~Dg~I~lwd~~~~--------~~---~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~  495 (704)
                      ++++|+    +|+.|++|++||+.++        +.   +..+.+|...|++++|+|+ +.+|++++.||+|++||++++
T Consensus       103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~  182 (434)
T 2oit_A          103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET  182 (434)
T ss_dssp             TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred             CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence            999999    7889999999998754        22   3556679999999999997 899999999999999999998


Q ss_pred             ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-------CCEEEEEEecCCCEEEEE-eC
Q 005277          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-------SMILSLAMSPDGRYMASG-DE  567 (704)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-------~~i~~l~~spdg~~l~sg-~~  567 (704)
                      ..+....+|...|.+++|+|+|++|++|+.||+|++||++ ++....+..|.       ..|.+++|++++.++++. ..
T Consensus       183 ~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~  261 (434)
T 2oit_A          183 VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA  261 (434)
T ss_dssp             EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred             cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence            7776777888999999999999999999999999999998 66666554442       389999999999887653 34


Q ss_pred             CC------eEEEEeCCCC
Q 005277          568 DG------TIMMWDLASG  579 (704)
Q Consensus       568 dg------~I~iwdl~~~  579 (704)
                      ||      .+++||++..
T Consensus       262 dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          262 DGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TCCSSSCCEEEEEECCCT
T ss_pred             CCccCCCCceEEEEeccC
Confidence            43      3899999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=1e-20  Score=230.24  Aligned_cols=298  Identities=10%  Similarity=-0.014  Sum_probs=214.9

Q ss_pred             CCCCEEEEEEc-CCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc-CeEEE
Q 005277          350 THNGLNCASIS-QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG-PVYSA  427 (704)
Q Consensus       350 ~~~~V~~~~fs-~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l  427 (704)
                      |...+.+++|| |||++||+++ ++.|.+|++...                             ....+..|.+ .+.++
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~  343 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT-----------------------------YVLKVPEPLRIRYVRR  343 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS-----------------------------BEEECSCCSCEEEEEE
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC-----------------------------ceEEccCCCcceEEee
Confidence            34479999999 9999999987 889999987641                             1223456666 89999


Q ss_pred             EEcCCCCEEEEEeCCCeEE-EEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC
Q 005277          428 SFSPLGDFILSSSADTTIR-LWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS  506 (704)
Q Consensus       428 ~~sp~~~~l~s~s~Dg~I~-lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~  506 (704)
                      +|+ +++.|++++.++.+. +|++.++.... +.+|...+..++|+|+|+++++++.++.|++||+.+++......+|..
T Consensus       344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~  421 (1045)
T 1k32_A          344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA  421 (1045)
T ss_dssp             CSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred             eEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC
Confidence            999 999999998888898 99998766543 447888999999999999999999999999999999988888878999


Q ss_pred             CeeEEEEcCCCCEEEEEECCC----------cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          507 DVDCVRWHINCNYIATGSSDK----------TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg----------~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                      .+.+++|+|+|++|++++.++          .|++||+.+++ +..+..|...+.+++|+|||++|++++.++...+|+.
T Consensus       422 ~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          422 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence            999999999999999887654          89999999887 6667788888999999999999999999999999987


Q ss_pred             CCCeeeeeecCCCceeeeeeeee--------eehccccccccccccc---cceee-eeeeEEeecccCCCCCEEEE----
Q 005277          577 ASGRCVTPLMGHTSCVWTLAYRF--------LLLVTNAYLKISDKVS---TGFLF-YSLTIIYFGCASCEGSLLAS----  640 (704)
Q Consensus       577 ~~~~~~~~~~~h~~~V~sl~~~~--------~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~s~~g~~las----  640 (704)
                      ......   ..+...++.+.+..        ...........+....   ..... .....+...+++++|.++++    
T Consensus       501 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~  577 (1045)
T 1k32_A          501 VVLNFS---FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH  577 (1045)
T ss_dssp             SSSCEE---CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCC
T ss_pred             hccccc---cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEeccc
Confidence            644321   11223333332210        0000000000000000   00000 00112223344899987775    


Q ss_pred             ---------EeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          641 ---------GSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       641 ---------gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                               .+..+.|.+||+.++...                .+.   ..|.+++|||||+.|++++.++
T Consensus       578 g~~~~~~~~~~~~~~l~~~d~~~~~~~----------------~l~---~~v~~~~~S~DG~~l~~~~~~~  629 (1045)
T 1k32_A          578 GEFAAYYQGAPEKGVLLKYDVKTRKVT----------------EVK---NNLTDLRLSADRKTVMVRKDDG  629 (1045)
T ss_dssp             CSHHHHHHCCCCCEEEEEEETTTCCEE----------------EEE---EEEEEEEECTTSCEEEEEETTS
T ss_pred             CcccccccccCCCceEEEEECCCCcEE----------------Eee---cCcceEEECCCCCEEEEEcCCc
Confidence                     123457888888776421                111   5688999999999999987663

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=5.2e-20  Score=194.89  Aligned_cols=253  Identities=7%  Similarity=0.083  Sum_probs=179.2

Q ss_pred             CeEEEEEeeCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc
Q 005277          341 SVSFYTFINTHNGLNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ  418 (704)
Q Consensus       341 ~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~--dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (704)
                      .........+...+..++|+|||++++++..  ++.|.+|++....                          ......+.
T Consensus        29 ~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~--------------------------~~~~~~~~   82 (347)
T 3hfq_A           29 TLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQT--------------------------AHKLNTVV   82 (347)
T ss_dssp             EEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTE--------------------------EEEEEEEE
T ss_pred             eEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCc--------------------------EEEeeeee
Confidence            3334445566677889999999994444432  6899999986421                          11223334


Q ss_pred             CCccCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCce---eEEeec---------CCcCeeEEEEcCCCCEEEEEeCCC
Q 005277          419 GHSGPVYSASFSPLGDFILSSS-ADTTIRLWSTKLNAN---LVCYKG---------HNYPVWDVQFNPQGHYFASSSHDR  485 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~~l~s~s-~Dg~I~lwd~~~~~~---~~~~~~---------h~~~V~~v~~sp~~~~l~sgs~dg  485 (704)
                      .+...+..++|+|++++|++++ .+++|.+|++.....   +..+..         +...+.+++|+|+|++++++..++
T Consensus        83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~  162 (347)
T 3hfq_A           83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD  162 (347)
T ss_dssp             EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred             cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence            4667788999999999988887 789999999963322   222221         122488999999999666667789


Q ss_pred             eEEEEECC-CCceeE--Eecc-CCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCC--CcE--EEEeecCC------CCE
Q 005277          486 TARIWSMD-RIQPLR--IMAG-HLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSS--GEC--VRIFIGHR------SMI  550 (704)
Q Consensus       486 ~i~lwd~~-~~~~~~--~~~~-~~~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~~~--~~~--~~~~~~h~------~~i  550 (704)
                      .|.+|+++ +++...  .+.. ....+..++|+|+|++++++ ..++.|.+|++..  ++.  +..+....      ..+
T Consensus       163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  242 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA  242 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred             EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence            99999998 443322  2222 23467889999999977664 5688999999874  543  22232222      458


Q ss_pred             EEEEEecCCCEEE-EEeCCCeEEEEeCCC---CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEE
Q 005277          551 LSLAMSPDGRYMA-SGDEDGTIMMWDLAS---GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTII  626 (704)
Q Consensus       551 ~~l~~spdg~~l~-sg~~dg~I~iwdl~~---~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (704)
                      ..++|+|||++|+ ++..++.|.+||+..   .+.+..+..+...+..++|                             
T Consensus       243 ~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------------------------  293 (347)
T 3hfq_A          243 AAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL-----------------------------  293 (347)
T ss_dssp             EEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE-----------------------------
T ss_pred             eeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE-----------------------------
Confidence            8999999999874 556789999999972   2555666666667788888                             


Q ss_pred             eecccCCCCCEEEEEeC-CCcEEEEeCC
Q 005277          627 YFGCASCEGSLLASGSA-DCTVKLWDVT  653 (704)
Q Consensus       627 ~~~~~s~~g~~lasgs~-Dg~V~iWd~~  653 (704)
                           +|+|++|++++. ++.|.+|++.
T Consensus       294 -----spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          294 -----DPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             -----CTTSSEEEEEETTTTEEEEEEEC
T ss_pred             -----CCCCCEEEEEEcCCCcEEEEEEe
Confidence                 999998888775 4899999554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=4.3e-21  Score=210.13  Aligned_cols=242  Identities=14%  Similarity=0.144  Sum_probs=175.6

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----------ceeE-----EeecCCcCeeEEEEcCCCCEEE----EEe
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLN----------ANLV-----CYKGHNYPVWDVQFNPQGHYFA----SSS  482 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~----------~~~~-----~~~~h~~~V~~v~~sp~~~~l~----sgs  482 (704)
                      ..++.+++++++.++++++.|+ +++|+....          ..+.     ....+...|.+++|+|+|++|+    +|+
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            4578899999999999999988 888875311          0111     1123567899999999999999    788


Q ss_pred             CCCeEEEEECCCC--------ce---eEEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCE
Q 005277          483 HDRTARIWSMDRI--------QP---LRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI  550 (704)
Q Consensus       483 ~dg~i~lwd~~~~--------~~---~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i  550 (704)
                      .|++|++||+++.        ++   +..+.+|...|.+++|+|+ +++|++++.||+|++||++++..+....+|...|
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v  195 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV  195 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred             CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence            8999999998654        22   4556679999999999998 8999999999999999999998777777899999


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC-------Cceeeeeeeeeeehccccccccccccccceeeeee
Q 005277          551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-------TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL  623 (704)
Q Consensus       551 ~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h-------~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (704)
                      ++++|+|+|++|++|+.||.|++||++ ++....+..|       ...|.++.|                          
T Consensus       196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w--------------------------  248 (434)
T 2oit_A          196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLW--------------------------  248 (434)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEE--------------------------
T ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEE--------------------------
Confidence            999999999999999999999999998 5555555433       337888888                          


Q ss_pred             eEEeecccCCCCCEEEE-EeCCCc------EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEE
Q 005277          624 TIIYFGCASCEGSLLAS-GSADCT------VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA  696 (704)
Q Consensus       624 ~~~~~~~~s~~g~~las-gs~Dg~------V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La  696 (704)
                              ++++.++++ ++.||.      +++|++.+.........   .........+.....+-+.+.+-++..+++
T Consensus       249 --------~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~---~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~  317 (434)
T 2oit_A          249 --------IGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIF---VNFMEPCYGSCTERQHHYYLSYIEEWDLVL  317 (434)
T ss_dssp             --------EETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEE---EECCCSSCCCCSSSCCCEEEEEEGGGTEEE
T ss_pred             --------ecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcce---EecccCCCCCCCCcCcceeeehhccCCEEE
Confidence                    777766644 334443      99999986532100000   000011111123344444455557777777


Q ss_pred             EeecCC
Q 005277          697 AGALSK  702 (704)
Q Consensus       697 ~gs~dg  702 (704)
                      +++...
T Consensus       318 v~s~~s  323 (434)
T 2oit_A          318 AASAAS  323 (434)
T ss_dssp             EEETTC
T ss_pred             EecCCC
Confidence            776543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=1.3e-20  Score=219.36  Aligned_cols=280  Identities=12%  Similarity=0.110  Sum_probs=193.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCc--cccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQ--QAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      +..+.|+  |..+++++.+| | +||+.+...  ...........      . .....   .  ....+...|.+++|+|
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~------~-l~~~~---~--~~~~~~~~v~~~~~sp   91 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNA------L-MPEGC---K--FQTTDAFPSFRTLDAG   91 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHT------T-C----------------CCCEEEEETT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhh------h-ccchh---c--cccccccCceeEEECC
Confidence            4456777  66777777788 8 999876433  11110000000      0 00000   0  0112335799999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-----CceeEEeccCCC
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-----IQPLRIMAGHLS  506 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-----~~~~~~~~~~~~  506 (704)
                      + ..++.+. +++|++||+.+++.. .+..+...+.+++|+|+|++++++ .++.|++||+.+     ++..+....+..
T Consensus        92 d-~~~~~~~-~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~  167 (706)
T 2z3z_A           92 R-GLVVLFT-QGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE  167 (706)
T ss_dssp             T-TEEEEEE-TTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred             C-CeEEEEE-CCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC
Confidence            9 6666554 599999999887654 445567789999999999999985 679999999998     776665544444


Q ss_pred             C--------------eeEEEEcCCCCEEEEEE---------------------------------CCCcEEEEeCCCCcE
Q 005277          507 D--------------VDCVRWHINCNYIATGS---------------------------------SDKTVRLWDVSSGEC  539 (704)
Q Consensus       507 ~--------------V~~v~~~p~~~~l~tgs---------------------------------~dg~I~iwd~~~~~~  539 (704)
                      .              +.+++|+|+|++|++++                                 .+..|++||+.+++.
T Consensus       168 ~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~  247 (706)
T 2z3z_A          168 TLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT  247 (706)
T ss_dssp             TEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred             CeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence            3              48999999999999987                                 456799999999887


Q ss_pred             EEEee--cCCCCEEEEEEecCCCEEEEEeCCC-----eEEEEeCCCCeeeeeec--CCCc---eeeeeeeeeeehccccc
Q 005277          540 VRIFI--GHRSMILSLAMSPDGRYMASGDEDG-----TIMMWDLASGRCVTPLM--GHTS---CVWTLAYRFLLLVTNAY  607 (704)
Q Consensus       540 ~~~~~--~h~~~i~~l~~spdg~~l~sg~~dg-----~I~iwdl~~~~~~~~~~--~h~~---~V~sl~~~~~~~~~~~~  607 (704)
                      .....  .|...+.+++|+|||++|++++.++     .|.+||+.+++....+.  .+..   .+.++.|          
T Consensus       248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~----------  317 (706)
T 2z3z_A          248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF----------  317 (706)
T ss_dssp             EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE----------
T ss_pred             EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee----------
Confidence            65543  4667899999999999999988775     99999999984333332  1221   2355667          


Q ss_pred             cccccccccceeeeeeeEEeecccCC--CCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEE
Q 005277          608 LKISDKVSTGFLFYSLTIIYFGCASC--EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS  685 (704)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~  685 (704)
                                              +|  +|+++++++.||.++||.+.....              .+..+..+...|..
T Consensus       318 ------------------------sp~~dg~~l~~~~~~g~~~l~~~~~~~~--------------~~~~l~~~~~~v~~  359 (706)
T 2z3z_A          318 ------------------------LPGSNNQFIWQSRRDGWNHLYLYDTTGR--------------LIRQVTKGEWEVTN  359 (706)
T ss_dssp             ------------------------CTTCSSEEEEEECTTSSCEEEEEETTSC--------------EEEECCCSSSCEEE
T ss_pred             ------------------------ecCCCCEEEEEEccCCccEEEEEECCCC--------------EEEecCCCCeEEEe
Confidence                                    99  999999999999999998863211              13344456667876


Q ss_pred             -EEEccCCcEEEEeecC
Q 005277          686 -LQFSRRNLLFAAGALS  701 (704)
Q Consensus       686 -l~fs~~g~~La~gs~d  701 (704)
                       +.|+|+|..|++++.+
T Consensus       360 ~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          360 FAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             EEEECTTSSEEEEEESS
T ss_pred             eeEEcCCCCEEEEEecC
Confidence             8999999877666554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=2.8e-20  Score=194.91  Aligned_cols=255  Identities=11%  Similarity=0.130  Sum_probs=191.0

Q ss_pred             CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc-CCcc-CeEEEEEcCCCCEEE-EEe
Q 005277          364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSG-PVYSASFSPLGDFIL-SSS  440 (704)
Q Consensus       364 ~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~V~~l~~sp~~~~l~-s~s  440 (704)
                      ++|++++.++.|.+||+.+..                            ....+. ++.. .+.+++|+|++++++ +++
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~----------------------------~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~   53 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMA----------------------------VDKVITIADAGPTPMVPMVAPGGRIAYATVN   53 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE----------------------------EEEEEECTTCTTCCCCEEECTTSSEEEEEET
T ss_pred             cEEEEcCCCCeEEEEECCCCc----------------------------EEEEEEcCCCCCCccceEEcCCCCEEEEEeC
Confidence            478999999999999987521                            112221 2222 478899999998765 566


Q ss_pred             CCCeEEEEeCCCCceeEEeecC-----CcCeeEEEEcCCCCEEEEEe------------CCCeEEEEECCCCceeEEecc
Q 005277          441 ADTTIRLWSTKLNANLVCYKGH-----NYPVWDVQFNPQGHYFASSS------------HDRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h-----~~~V~~v~~sp~~~~l~sgs------------~dg~i~lwd~~~~~~~~~~~~  503 (704)
                      .++.|.+||+.+++.+..+...     ...+.+++|+|+|+++++++            .++.|.+||+.+++.+..+..
T Consensus        54 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~  133 (337)
T 1pby_B           54 KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA  133 (337)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred             CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence            6889999999999887766532     22677899999999998886            579999999999888777764


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC--------------
Q 005277          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG--------------  569 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg--------------  569 (704)
                       ...+.+++|+|++++|+++  ++.|++||+.+++.+..+..+... ..+.|+|+|+.++..+..+              
T Consensus       134 -~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~  209 (337)
T 1pby_B          134 -PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDI  209 (337)
T ss_dssp             -CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTS
T ss_pred             -CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeecccccc
Confidence             4568889999999988888  689999999999988777654311 1337899998776554332              


Q ss_pred             ----------eEEEEeCCCCeee-eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEE
Q 005277          570 ----------TIMMWDLASGRCV-TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL  638 (704)
Q Consensus       570 ----------~I~iwdl~~~~~~-~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  638 (704)
                                .|.+||+.+++.. ..+..+...+.++.|                                  +|+|+++
T Consensus       210 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~----------------------------------s~dg~~l  255 (337)
T 1pby_B          210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV----------------------------------NPAKTRA  255 (337)
T ss_dssp             CTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE----------------------------------CTTSSEE
T ss_pred             ccccccccccceEEEeCCCCCceEeecCCCCCceeeEEE----------------------------------CCCCCEE
Confidence                      4689999988764 223345556677788                                  9999999


Q ss_pred             EEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          639 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       639 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                      +++  ++.|++||+.+++..               ..+.. ...+.+++|+|+|.+|++++.++
T Consensus       256 ~~~--~~~v~~~d~~~~~~~---------------~~~~~-~~~~~~~~~s~dg~~l~~~~~~~  301 (337)
T 1pby_B          256 FGA--YNVLESFDLEKNASI---------------KRVPL-PHSYYSVNVSTDGSTVWLGGALG  301 (337)
T ss_dssp             EEE--ESEEEEEETTTTEEE---------------EEEEC-SSCCCEEEECTTSCEEEEESBSS
T ss_pred             EEe--CCeEEEEECCCCcCc---------------ceecC-CCceeeEEECCCCCEEEEEcCCC
Confidence            888  799999999876532               12221 23578999999999888887654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=5.8e-20  Score=192.52  Aligned_cols=260  Identities=12%  Similarity=0.092  Sum_probs=192.5

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCC---CEEEEEEcCCCCEE-EEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277          330 NRVHLSSAALPSVSFYTFINTHN---GLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~---~V~~~~fs~dg~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (704)
                      ..+.+++.......  .......   .+.+++|+|+|+.+ +++..++.|.+||+.+.....                  
T Consensus        11 ~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~------------------   70 (337)
T 1pby_B           11 DKLVVIDTEKMAVD--KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG------------------   70 (337)
T ss_dssp             TEEEEEETTTTEEE--EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE------------------
T ss_pred             CeEEEEECCCCcEE--EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe------------------
Confidence            35566654433222  2222333   58899999999765 455567899999987532111                  


Q ss_pred             CCCCCccceeeccC----CccCeEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCCceeEEeecCCcCeeEE
Q 005277          406 GPNGRKRSYTLYQG----HSGPVYSASFSPLGDFILSSS------------ADTTIRLWSTKLNANLVCYKGHNYPVWDV  469 (704)
Q Consensus       406 ~~~~~~~~~~~~~~----h~~~V~~l~~sp~~~~l~s~s------------~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v  469 (704)
                               ....+    |...+.+++|+|++++|++++            .++.|.+||+.+++.+..+.. ...+.++
T Consensus        71 ---------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~  140 (337)
T 1pby_B           71 ---------RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML  140 (337)
T ss_dssp             ---------EEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred             ---------eEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence                     00011    233577899999999988886            579999999998888777764 4567889


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCC----------------------
Q 005277          470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK----------------------  527 (704)
Q Consensus       470 ~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg----------------------  527 (704)
                      +|+|+|++++++  ++.|.+||+.+++.+..+..+.. ...+.|+|++.++++++..+                      
T Consensus       141 ~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (337)
T 1pby_B          141 AWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY  217 (337)
T ss_dssp             EECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred             EECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence            999999988888  68999999999988777764431 11337889988776554332                      


Q ss_pred             --cEEEEeCCCCcEE-EEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcc
Q 005277          528 --TVRLWDVSSGECV-RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVT  604 (704)
Q Consensus       528 --~I~iwd~~~~~~~-~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~  604 (704)
                        .|.+||+.+++.. ..+..+...+.+++|+|+|++++++  ++.|.+||+.+++.+..+..+ ..+.++.|       
T Consensus       218 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~-------  287 (337)
T 1pby_B          218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNV-------  287 (337)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEE-------
T ss_pred             ccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEE-------
Confidence              4689999998774 2234566778999999999999988  789999999999888777643 45677788       


Q ss_pred             ccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 005277          605 NAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL  659 (704)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~  659 (704)
                                                 +|+|++|++++.++.|++||+.+++...
T Consensus       288 ---------------------------s~dg~~l~~~~~~~~i~v~d~~~~~~~~  315 (337)
T 1pby_B          288 ---------------------------STDGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             ---------------------------CTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             ---------------------------CCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence                                       9999999999999999999999876543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=1e-18  Score=186.10  Aligned_cols=244  Identities=12%  Similarity=0.148  Sum_probs=173.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCC----CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          350 THNGLNCASISQDGSLVAGGFSD----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~d----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      +...+..++|+|||++|++++.+    +.|.+|+++...                        +..........+.....
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~------------------------g~~~~~~~~~~~~~~p~  103 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK------------------------GTLHLLNTQKTMGADPC  103 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT------------------------TEEEEEEEEECSSSCEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC------------------------CcEEEeeEeccCCCCcE
Confidence            66778889999999999999876    899999987521                        00112222333445667


Q ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEe------ec--------CCcCeeEEEEcCCCCEEEEEe-CCCeEEE
Q 005277          426 SASFSPLGDFILSSS-ADTTIRLWSTKLNANLVCY------KG--------HNYPVWDVQFNPQGHYFASSS-HDRTARI  489 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s-~Dg~I~lwd~~~~~~~~~~------~~--------h~~~V~~v~~sp~~~~l~sgs-~dg~i~l  489 (704)
                      .+++  ++++|++++ .+++|.+|++.....+...      .+        +...+.+++|+|+|+++++++ .++.+.+
T Consensus       104 ~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v  181 (361)
T 3scy_A          104 YLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHK  181 (361)
T ss_dssp             EEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEE
Confidence            7787  788777665 6889999999754433211      11        123357899999999776655 5899999


Q ss_pred             EECCCCce------e-------EEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEE--EEe---ecCCCCE
Q 005277          490 WSMDRIQP------L-------RIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECV--RIF---IGHRSMI  550 (704)
Q Consensus       490 wd~~~~~~------~-------~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~--~~~---~~h~~~i  550 (704)
                      |+++....      +       .....+...+.+++|+|+|+++++++ .++.|.+||+.++...  ..+   ..+...+
T Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~  261 (361)
T 3scy_A          182 FNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS  261 (361)
T ss_dssp             EEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE
T ss_pred             EEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc
Confidence            99875431      1       22233456688999999999888877 6899999999877542  222   2333557


Q ss_pred             EEEEEecCCCEEEEEeC--CCeEEEEeCC--CCe--eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeee
Q 005277          551 LSLAMSPDGRYMASGDE--DGTIMMWDLA--SGR--CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT  624 (704)
Q Consensus       551 ~~l~~spdg~~l~sg~~--dg~I~iwdl~--~~~--~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (704)
                      .+++|+|||++|+++..  ++.|.+|++.  +++  .+..+.. ...+..++|                           
T Consensus       262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~---------------------------  313 (361)
T 3scy_A          262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII---------------------------  313 (361)
T ss_dssp             EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE---------------------------
T ss_pred             ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE---------------------------
Confidence            89999999999877665  4899999985  444  3444444 455677788                           


Q ss_pred             EEeecccCCCCCEEEEEe-CCCcEEEEeCCC
Q 005277          625 IIYFGCASCEGSLLASGS-ADCTVKLWDVTT  654 (704)
Q Consensus       625 ~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~~  654 (704)
                             +|+|++|++++ .++.|.+|++..
T Consensus       314 -------spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          314 -------TPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             -------CTTSCEEEEEETTTTEEEEEEECT
T ss_pred             -------CCCCCEEEEEECCCCCEEEEEEEC
Confidence                   99999888887 678999976653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=1.3e-19  Score=190.93  Aligned_cols=234  Identities=13%  Similarity=0.088  Sum_probs=180.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC-ccCeEEEEEcCCCC
Q 005277          356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH-SGPVYSASFSPLGD  434 (704)
Q Consensus       356 ~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~  434 (704)
                      .+++++++.++++++.++.|.+||+.+..                            ....+..+ ...+..++|+|+++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~----------------------------~~~~~~~~~~~~~~~~~~s~dg~   55 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDT----------------------------VYKSCVMPDKFGPGTAMMAPDNR   55 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTE----------------------------EEEEEECSSCCSSCEEEECTTSS
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCc----------------------------EEEEEecCCCCCCceeEECCCCC
Confidence            45688899999999999999999987521                            12222222 12567899999998


Q ss_pred             EEE-EEeCCCeEEEEeCCCCceeEEeecCC------cCeeEEEEcCCCCEEEEEeCC------------CeEEEEECCCC
Q 005277          435 FIL-SSSADTTIRLWSTKLNANLVCYKGHN------YPVWDVQFNPQGHYFASSSHD------------RTARIWSMDRI  495 (704)
Q Consensus       435 ~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~------~~V~~v~~sp~~~~l~sgs~d------------g~i~lwd~~~~  495 (704)
                      +++ ++..++.|.+||+.+++.+..+..+.      ..+.+++|+|+|+++++++.+            +.|.+||+.++
T Consensus        56 ~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  135 (349)
T 1jmx_B           56 TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  135 (349)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             EEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc
Confidence            665 55678999999999988877766332      237899999999999998865            89999999874


Q ss_pred             c---eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-------------------------
Q 005277          496 Q---PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-------------------------  547 (704)
Q Consensus       496 ~---~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-------------------------  547 (704)
                      +   .+..+. +...+.+++|+|+++ +++++  +.|++||+.+++.+..+..+.                         
T Consensus       136 ~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (349)
T 1jmx_B          136 LEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS  211 (349)
T ss_dssp             GGBCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred             cccceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence            3   334444 334688999999999 65553  449999999988777654331                         


Q ss_pred             -------------------------------------------CCEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCeeee
Q 005277          548 -------------------------------------------SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVT  583 (704)
Q Consensus       548 -------------------------------------------~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~~~~~  583 (704)
                                                                 ..+.+++|+| +|++++++  ++.|.+||+.+++.+.
T Consensus       212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~  289 (349)
T 1jmx_B          212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK  289 (349)
T ss_dssp             EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE
T ss_pred             eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE
Confidence                                                       1345678889 99999888  8899999999998887


Q ss_pred             eecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277          584 PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       584 ~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~  658 (704)
                      .+... ..+.++.|                                  +++|++|++++.++.|++||+.+++.+
T Consensus       290 ~~~~~-~~~~~~~~----------------------------------s~dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          290 AANLD-HTYYCVAF----------------------------------DKKGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             EEECS-SCCCEEEE----------------------------------CSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             EEcCC-CCccceEE----------------------------------CCCCCEEEEecCCCeEEEEecccccee
Confidence            77533 34667888                                  999998888888999999999887654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=3e-19  Score=189.00  Aligned_cols=236  Identities=14%  Similarity=0.152  Sum_probs=167.9

Q ss_pred             CCccCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 005277          419 GHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSM  492 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~~l~s~s~---Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~  492 (704)
                      .+...+..++|+|+++ |++++.   ++.|.+|++.++.  .+..+..+...+..++|+|+|+++++++ .++.+.+|++
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            3456678899999999 665544   6899999997665  3444455777889999999999988888 7899999999


Q ss_pred             CCC---ceeEEecc---------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCcEEE--Eeec-CCCCEEEEEEe
Q 005277          493 DRI---QPLRIMAG---------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVR--IFIG-HRSMILSLAMS  556 (704)
Q Consensus       493 ~~~---~~~~~~~~---------~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~~--~~~~-h~~~i~~l~~s  556 (704)
                      +..   ..+..+..         +...+.+++|+|+|++++++..++.|++||+. +++...  .+.. ....+..++|+
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s  195 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS  195 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence            632   22333321         12347889999999966666678899999998 554332  2222 23367889999


Q ss_pred             cCCCEEEE-EeCCCeEEEEeCCC--Cee--eeeecCCC------ceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277          557 PDGRYMAS-GDEDGTIMMWDLAS--GRC--VTPLMGHT------SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI  625 (704)
Q Consensus       557 pdg~~l~s-g~~dg~I~iwdl~~--~~~--~~~~~~h~------~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (704)
                      |||++|++ +..++.|.+|++..  ++.  +..+....      ..+..+.|                            
T Consensus       196 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------------  247 (347)
T 3hfq_A          196 PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRL----------------------------  247 (347)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEE----------------------------
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEE----------------------------
Confidence            99996665 56788999999874  443  22222211      34566666                            


Q ss_pred             EeecccCCCCCEE-EEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          626 IYFGCASCEGSLL-ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       626 ~~~~~~s~~g~~l-asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                            +|+|++| +++..++.|.+|++.....            ...+..++.+...+..++|+|+|++|++++.+
T Consensus       248 ------spdG~~l~v~~~~~~~v~v~~~~~~g~------------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          248 ------SHDGHFLYVSNRGYNTLAVFAVTADGH------------LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             ------CTTSCEEEEEEETTTEEEEEEECGGGC------------EEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred             ------CCCCCEEEEEeCCCCEEEEEEECCCCc------------EEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence                  9999977 5566789999999874221            12344555556668899999999988887765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=9.1e-19  Score=184.97  Aligned_cols=243  Identities=11%  Similarity=-0.024  Sum_probs=179.1

Q ss_pred             eEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       331 ~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~la-sg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      .+.+++........  .......+.+++|+|+|++++ ++..++.|.+||..+............               
T Consensus        70 ~v~~~d~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---------------  132 (353)
T 3vgz_A           70 VVYRLDPVTLEVTQ--AIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDR---------------  132 (353)
T ss_dssp             EEEEECTTTCCEEE--EEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCC---------------
T ss_pred             cEEEEcCCCCeEEE--EEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCC---------------
Confidence            45555544333222  223345578899999999555 455579999999876322111000000               


Q ss_pred             CccceeeccCCccCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeE
Q 005277          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i  487 (704)
                          ..........+.+++|+|+++++++++  .++.|.+||..+++.+..+..+...+.+++|+|+|+++++++.++.+
T Consensus       133 ----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i  208 (353)
T 3vgz_A          133 ----KRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGEL  208 (353)
T ss_dssp             ----CCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEE
T ss_pred             ----ccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeE
Confidence                000000111368899999999887665  47899999999999888887666678899999999999999999999


Q ss_pred             EEEECCCCceeEEecc----CCCCeeEEEEcCCCCEEEEEECC-CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEE
Q 005277          488 RIWSMDRIQPLRIMAG----HLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM  562 (704)
Q Consensus       488 ~lwd~~~~~~~~~~~~----~~~~V~~v~~~p~~~~l~tgs~d-g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l  562 (704)
                      .+||+.+++.+..+..    +...+.+++|+|+++++++++.+ +.|.+||+.+++.+..+.....  .+++|+|+|+++
T Consensus       209 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l  286 (353)
T 3vgz_A          209 ITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEA  286 (353)
T ss_dssp             EEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEE
T ss_pred             EEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEE
Confidence            9999999988877654    45567889999999988777654 9999999999998887765432  579999999976


Q ss_pred             EEEe-CCCeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277          563 ASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       563 ~sg~-~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      ++++ .++.|.+||+.+++.+..+..+. .+.++.|
T Consensus       287 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~  321 (353)
T 3vgz_A          287 YVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLAL  321 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEE
T ss_pred             EEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEE
Confidence            6555 78999999999999888776543 6678888

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.84  E-value=2.3e-19  Score=192.68  Aligned_cols=289  Identities=11%  Similarity=-0.007  Sum_probs=191.2

Q ss_pred             EEEEeeCCCCEEE-----EEEcCCCCEEEEEeC-CCc--EEEEEcccCCccccccccCCCCCCCCcccccCCCCCcccee
Q 005277          344 FYTFINTHNGLNC-----ASISQDGSLVAGGFS-DSS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT  415 (704)
Q Consensus       344 ~~~~~~~~~~V~~-----~~fs~dg~~lasg~~-dg~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (704)
                      ...+..+......     .+|||||++||.++. +|.  |.+||+.+.                            ....
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g----------------------------~~~~   74 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ----------------------------VATQ   74 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC----------------------------EEEE
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC----------------------------ceEE
Confidence            3344555555555     789999999999987 675  666676541                            2223


Q ss_pred             eccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEE--EcCCCCEEEEE------------
Q 005277          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQ--FNPQGHYFASS------------  481 (704)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~--~sp~~~~l~sg------------  481 (704)
                      ...+|...+.++.|+||++.|+.++.++.|++||+.+++....+..+...+....  ++|++.+++..            
T Consensus        75 lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~  154 (388)
T 3pe7_A           75 LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD  154 (388)
T ss_dssp             CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred             eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccc
Confidence            3345555566778999999999999999999999999988777776666554444  48999988743            


Q ss_pred             ----------eCCCeEEEEECCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEECC------CcEEEEeCCCCcEEEEee
Q 005277          482 ----------SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSD------KTVRLWDVSSGECVRIFI  544 (704)
Q Consensus       482 ----------s~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~  544 (704)
                                +.+..|.+||+.+++..... .+...+..++|+| +|+.|+..+.+      ..|.++|...+... .+.
T Consensus       155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~  232 (388)
T 3pe7_A          155 WKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVK  232 (388)
T ss_dssp             HHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESC
T ss_pred             cchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-Eee
Confidence                      24478999999988655444 4667789999999 99999887753      37888888766543 344


Q ss_pred             cCC--CCEEEEEEecCCCEEEEEeC-CC----eEEEEeCCCCeee--eeecCCCce---eeeeeeeeeehcccccccccc
Q 005277          545 GHR--SMILSLAMSPDGRYMASGDE-DG----TIMMWDLASGRCV--TPLMGHTSC---VWTLAYRFLLLVTNAYLKISD  612 (704)
Q Consensus       545 ~h~--~~i~~l~~spdg~~l~sg~~-dg----~I~iwdl~~~~~~--~~~~~h~~~---V~sl~~~~~~~~~~~~~~~~~  612 (704)
                      .+.  ..+..++|+|||+.|+..+. ++    .|++||+.+++..  ..+.++...   .....|               
T Consensus       233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~---------------  297 (388)
T 3pe7_A          233 THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLM---------------  297 (388)
T ss_dssp             CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEE---------------
T ss_pred             eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeE---------------
Confidence            444  25788999999997765443 22    3999999988643  233321110   011133               


Q ss_pred             ccccceeeeeeeEEeecccCCCCCEEEEE---------eCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCe
Q 005277          613 KVSTGFLFYSLTIIYFGCASCEGSLLASG---------SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV  683 (704)
Q Consensus       613 ~~~~~~~~~~~~~~~~~~~s~~g~~lasg---------s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V  683 (704)
                                         +|+|+.|+..         ..+..|++||+.++....-.... .  .+..  ........+
T Consensus       298 -------------------spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~--~~~~--~~~~~~~~~  353 (388)
T 3pe7_A          298 -------------------VGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHD-T--SWKV--FEGDRQVTH  353 (388)
T ss_dssp             -------------------EEEECCC------------CCCCEEEEEETTTTEEEEEEECC-C--CCCC--BTTBSSTTC
T ss_pred             -------------------ccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecccc-C--cccc--cccccccCC
Confidence                               8888877643         45678999999886431100000 0  0000  000111247


Q ss_pred             EEEEEccCCcEEEEeecC
Q 005277          684 YSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       684 ~~l~fs~~g~~La~gs~d  701 (704)
                      .+++|+|||+.|+.++..
T Consensus       354 ~~~~~spDg~~l~~~s~~  371 (388)
T 3pe7_A          354 PHPSFTPDDKQILFTSDV  371 (388)
T ss_dssp             CCCEECTTSSEEEEEECT
T ss_pred             CCccCCCCCCEEEEEecC
Confidence            788999999988877653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=3.6e-20  Score=216.27  Aligned_cols=264  Identities=12%  Similarity=0.116  Sum_probs=187.5

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc---CeEEEEEcCC
Q 005277          356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG---PVYSASFSPL  432 (704)
Q Consensus       356 ~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~  432 (704)
                      +++|+|||++++++ .||.|++||+.+..                            ....+.+|..   .|.+++||||
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~----------------------------~~~~~~~~~~~~~~~~~~~~SpD   70 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQ----------------------------SYTILSNRTMKSVNASNYGLSPD   70 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCC----------------------------EEEEECHHHHHTTTCSEEEECTT
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCc----------------------------EEEEEccccccccceeeEEECCC
Confidence            56899999766555 69999999987622                            2223333333   4899999999


Q ss_pred             CCEEEEEeC---------CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-c
Q 005277          433 GDFILSSSA---------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-A  502 (704)
Q Consensus       433 ~~~l~s~s~---------Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~-~  502 (704)
                      |++|++++.         +++|++||+.+++.+.... ....+..++|||+|+.|+++. ++.|++|++.+++..+.. .
T Consensus        71 g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~  148 (719)
T 1z68_A           71 RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN  148 (719)
T ss_dssp             SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCC
T ss_pred             CCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC
Confidence            999998876         7899999999887621111 135688999999999999986 789999999887765543 2


Q ss_pred             cCCCC-----------------eeEEEEcCCCCEEEEEECCC----------------------------------cEEE
Q 005277          503 GHLSD-----------------VDCVRWHINCNYIATGSSDK----------------------------------TVRL  531 (704)
Q Consensus       503 ~~~~~-----------------V~~v~~~p~~~~l~tgs~dg----------------------------------~I~i  531 (704)
                      ++...                 ..+++|+|||++|++++.|.                                  .|++
T Consensus       149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~  228 (719)
T 1z68_A          149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI  228 (719)
T ss_dssp             CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence            22222                 25899999999999987652                                  7889


Q ss_pred             EeCCCCcEE---EE-----eecCCCCEEEEEEecCCCEEEEEeCC----CeEEEEe----CCCCeeeeee----cCCCce
Q 005277          532 WDVSSGECV---RI-----FIGHRSMILSLAMSPDGRYMASGDED----GTIMMWD----LASGRCVTPL----MGHTSC  591 (704)
Q Consensus       532 wd~~~~~~~---~~-----~~~h~~~i~~l~~spdg~~l~sg~~d----g~I~iwd----l~~~~~~~~~----~~h~~~  591 (704)
                      ||+.+++..   ..     +.+|...+.+++|||||+++++....    ..|.+||    +.+++....+    .+|...
T Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~  308 (719)
T 1z68_A          229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGW  308 (719)
T ss_dssp             EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSC
T ss_pred             EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCce
Confidence            999988753   21     23578889999999999877775433    3488999    8888776665    467766


Q ss_pred             ee-----eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE--EeCCC--cEEEEeCCCCccccccc
Q 005277          592 VW-----TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS--GSADC--TVKLWDVTTSTKVLKTE  662 (704)
Q Consensus       592 V~-----sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las--gs~Dg--~V~iWd~~~~~~~~~~~  662 (704)
                      +.     .+.|                                  +|+|+.++.  +..+|  .|.+||+.++.      
T Consensus       309 ~~~~~~~~~~~----------------------------------spdg~~l~~~~~~~~g~~~l~~~~~~~~~------  348 (719)
T 1z68_A          309 AGGFFVSTPVF----------------------------------SYDAISYYKIFSDKDGYKHIHYIKDTVEN------  348 (719)
T ss_dssp             SSSSSCCCCEE----------------------------------CTTSSCEEEEEECTTSCEEEEEESSCSTT------
T ss_pred             EccccCCccEE----------------------------------CCCCCeEEEEEEccCCceEEEEEECCCCc------
Confidence            66     6777                                  999986543  44566  46666665543      


Q ss_pred             cccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       663 ~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                                ...+..+...|..+.|+ ++..++..+.+
T Consensus       349 ----------~~~lt~~~~~v~~~~~~-d~~~i~~~~~~  376 (719)
T 1z68_A          349 ----------AIQITSGKWEAINIFRV-TQDSLFYSSNE  376 (719)
T ss_dssp             ----------CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred             ----------eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence                      11233344557777777 77666655543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=2.1e-18  Score=183.61  Aligned_cols=234  Identities=12%  Similarity=0.158  Sum_probs=163.9

Q ss_pred             CccCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCC--c--eeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEE
Q 005277          420 HSGPVYSASFSPLGDFILSSSAD----TTIRLWSTKLN--A--NLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIW  490 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~D----g~I~lwd~~~~--~--~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lw  490 (704)
                      +...+..++|+|++++|++++.+    +.|.+|++...  .  .+.....+......+++  +++++++++ .++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            66777889999999999988876    79999998763  2  23334445556777888  788777776 68899999


Q ss_pred             ECCCCceeEE------ecc--------CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCc-------E------EEE
Q 005277          491 SMDRIQPLRI------MAG--------HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGE-------C------VRI  542 (704)
Q Consensus       491 d~~~~~~~~~------~~~--------~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~-------~------~~~  542 (704)
                      ++.....+..      ..+        +...+.+++|+|+|+++++++ .++.|++|++....       .      ...
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            9975432211      111        123357899999999776665 47899999887533       1      122


Q ss_pred             eecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCCCee--eeee---cCCCceeeeeeeeeeehcccccccccccccc
Q 005277          543 FIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRC--VTPL---MGHTSCVWTLAYRFLLLVTNAYLKISDKVST  616 (704)
Q Consensus       543 ~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~~~--~~~~---~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~  616 (704)
                      ...+...+.+++|+|+|+++++++ .++.|.+||+.+++.  +..+   ..+......+.|                   
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~-------------------  266 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHL-------------------  266 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEE-------------------
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEE-------------------
Confidence            234456688999999999888777 689999999987754  2222   223344567777                   


Q ss_pred             ceeeeeeeEEeecccCCCCCEEEEEeC--CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcE
Q 005277          617 GFLFYSLTIIYFGCASCEGSLLASGSA--DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL  694 (704)
Q Consensus       617 ~~~~~~~~~~~~~~~s~~g~~lasgs~--Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~  694 (704)
                                     +|+|++|++++.  ++.|.+|++......           ...+..+.. ...+.+++|+|+|++
T Consensus       267 ---------------spdg~~l~v~~~~~~~~i~v~~~~~~~g~-----------~~~~~~~~~-g~~~~~~~~spdg~~  319 (361)
T 3scy_A          267 ---------------SPDGKYLYASNRLKADGVAIFKVDETNGT-----------LTKVGYQLT-GIHPRNFIITPNGKY  319 (361)
T ss_dssp             ---------------CTTSSEEEEEECSSSCEEEEEEECTTTCC-----------EEEEEEEEC-SSCCCEEEECTTSCE
T ss_pred             ---------------CCCCCEEEEECCCCCCEEEEEEEcCCCCc-----------EEEeeEecC-CCCCceEEECCCCCE
Confidence                           999998866665  489999999632110           122333433 456789999999998


Q ss_pred             EEEeecC
Q 005277          695 FAAGALS  701 (704)
Q Consensus       695 La~gs~d  701 (704)
                      |++++.+
T Consensus       320 l~~~~~~  326 (361)
T 3scy_A          320 LLVACRD  326 (361)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            8888743

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=1.4e-19  Score=211.27  Aligned_cols=293  Identities=12%  Similarity=0.120  Sum_probs=200.1

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCC----CEEEEEEcCCCCEEEEEeC---------CCcEEEEEcccCCccccccccCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHN----GLNCASISQDGSLVAGGFS---------DSSLKVWDMAKLGQQAVSSGLQGEN  396 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~----~V~~~~fs~dg~~lasg~~---------dg~I~iwdl~~~~~~~~~~~~~~~~  396 (704)
                      ..+++|+........  +..++.    .+.+++|||||++||+++.         ++.|++||+.+.....         
T Consensus        36 ~~i~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~---------  104 (719)
T 1z68_A           36 NNIVLYNIETGQSYT--ILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR---------  104 (719)
T ss_dssp             SCEEEEESSSCCEEE--EECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---------
T ss_pred             CCEEEEEcCCCcEEE--EEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc---------
Confidence            467777765554332  233322    4899999999999999876         7899999987632100         


Q ss_pred             CCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-ecCCcCe---------
Q 005277          397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGHNYPV---------  466 (704)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~-~~h~~~V---------  466 (704)
                                       ...+   ...+.+++|||||+.|+.++ ++.|++|++.++...... .++...|         
T Consensus       105 -----------------~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~  163 (719)
T 1z68_A          105 -----------------GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY  163 (719)
T ss_dssp             -----------------SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred             -----------------ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence                             0001   24588899999999999886 789999999887765432 2232222         


Q ss_pred             --------eEEEEcCCCCEEEEEeCCC----------------------------------eEEEEECCCCcee---EE-
Q 005277          467 --------WDVQFNPQGHYFASSSHDR----------------------------------TARIWSMDRIQPL---RI-  500 (704)
Q Consensus       467 --------~~v~~sp~~~~l~sgs~dg----------------------------------~i~lwd~~~~~~~---~~-  500 (704)
                              .+++|+|||++|++++.|.                                  .|++||+.+++..   .. 
T Consensus       164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~  243 (719)
T 1z68_A          164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP  243 (719)
T ss_dssp             HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred             eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence                    4899999999999988652                                  7899999887642   21 


Q ss_pred             ----eccCCCCeeEEEEcCCCCEEEEEECC----CcEEEEe----CCCCcEEEEe----ecCCCCEE-----EEEEecCC
Q 005277          501 ----MAGHLSDVDCVRWHINCNYIATGSSD----KTVRLWD----VSSGECVRIF----IGHRSMIL-----SLAMSPDG  559 (704)
Q Consensus       501 ----~~~~~~~V~~v~~~p~~~~l~tgs~d----g~I~iwd----~~~~~~~~~~----~~h~~~i~-----~l~~spdg  559 (704)
                          +.+|...+.+++|+||++++++....    ..|.+||    +.++++...+    .+|...+.     .++|+|||
T Consensus       244 ~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          244 VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence                23577789999999998877775433    2489999    8888766555    46777676     88999999


Q ss_pred             CEEEE--EeCCC--eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC
Q 005277          560 RYMAS--GDEDG--TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG  635 (704)
Q Consensus       560 ~~l~s--g~~dg--~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  635 (704)
                      +.|+.  +..+|  .|.+||+.+++ ...+..+...+..+.+                                  + ++
T Consensus       324 ~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~----------------------------------~-d~  367 (719)
T 1z68_A          324 ISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFR----------------------------------V-TQ  367 (719)
T ss_dssp             SCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEE----------------------------------E-CS
T ss_pred             CeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEE----------------------------------E-eC
Confidence            96554  44555  57778887766 4455555556666666                                  6 67


Q ss_pred             CEEEEEeCC-----CcEEEEeCCCCccccccccccCcccccccc-ccCCCCcCeEEEEEccCCcEEEEee
Q 005277          636 SLLASGSAD-----CTVKLWDVTTSTKVLKTEEKSGTNRLRSLK-TLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       636 ~~lasgs~D-----g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                      +.|+..+.+     +.+++|.+......         .....+. .+..+...+..+.|+|++..++..+
T Consensus       368 ~~i~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~  428 (719)
T 1z68_A          368 DSLFYSSNEFEEYPGRRNIYRISIGSYP---------PSKKCVTCHLRKERCQYYTASFSDYAKYYALVC  428 (719)
T ss_dssp             SEEEEEESCGGGCTTCBEEEEEECSSSS---------CCEEESSTTTTTTTBCBEEEEECGGGSSEEEEE
T ss_pred             CEEEEEEecCCCCCceEEEEEEeCCCCC---------CCceeccCccCCCCCceEEEEECCCCCEEEEEc
Confidence            766665554     88999988652110         0001121 1333556788999999998777543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=4.3e-18  Score=181.88  Aligned_cols=242  Identities=11%  Similarity=0.032  Sum_probs=170.7

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcc-cCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMA-KLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      ..+..++|+|||++|++++.+ .|.+|++. .....                          .......+ +.+.+++|+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~--------------------------~~~~~~~~-g~~~~~~~s   91 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV--------------------------HEASHPIG-GHPRANDAD   91 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE--------------------------EEEEEECC-SSGGGGCTT
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE--------------------------EeeEeecC-CCCccEEEC
Confidence            467889999999999998887 99999986 31100                          00001111 224558899


Q ss_pred             CCCCE--EEEEe-------------CCCeEEEEeCCC-CceeEEee----cCCcCeeEEEEcCCCCEEEEEeC-CCeEEE
Q 005277          431 PLGDF--ILSSS-------------ADTTIRLWSTKL-NANLVCYK----GHNYPVWDVQFNPQGHYFASSSH-DRTARI  489 (704)
Q Consensus       431 p~~~~--l~s~s-------------~Dg~I~lwd~~~-~~~~~~~~----~h~~~V~~v~~sp~~~~l~sgs~-dg~i~l  489 (704)
                      |++++  +++++             .+|++.+|++.. ++....+.    .+...+.+++|+|+|+++++++. ++.|++
T Consensus        92 pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~  171 (365)
T 1jof_A           92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWT  171 (365)
T ss_dssp             SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEE
Confidence            99994  44553             689999999974 55443333    24567999999999998887764 689999


Q ss_pred             EECC-CCcee--EEec--cCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCC--CCcEEE---Eee-------cCCC---
Q 005277          490 WSMD-RIQPL--RIMA--GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVS--SGECVR---IFI-------GHRS---  548 (704)
Q Consensus       490 wd~~-~~~~~--~~~~--~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~--~~~~~~---~~~-------~h~~---  548 (704)
                      |+++ +++..  ..+.  .|...+..++|+|+|+++++++. ++.|.+|++.  +++...   .+.       +|..   
T Consensus       172 ~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~  251 (365)
T 1jof_A          172 HRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG  251 (365)
T ss_dssp             EEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred             EEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccc
Confidence            9998 66543  2333  24567899999999999988775 6899999765  565431   221       1222   


Q ss_pred             ---CEEEEE-EecCCCEEEEEeCC-C-----eEEEEeCC-CCeeee---eecCCCceeeeeeeeeeehcccccccccccc
Q 005277          549 ---MILSLA-MSPDGRYMASGDED-G-----TIMMWDLA-SGRCVT---PLMGHTSCVWTLAYRFLLLVTNAYLKISDKV  614 (704)
Q Consensus       549 ---~i~~l~-~spdg~~l~sg~~d-g-----~I~iwdl~-~~~~~~---~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~  614 (704)
                         .+..++ |+|||++|++++.+ +     .|.+|++. +++...   ....+...+..++|                 
T Consensus       252 ~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~-----------------  314 (365)
T 1jof_A          252 KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV-----------------  314 (365)
T ss_dssp             SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCE-----------------
T ss_pred             cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCccccee-----------------
Confidence               588999 99999998876543 2     89999996 565433   23334444566666                 


Q ss_pred             ccceeeeeeeEEeecccCC---CCCEEEEEeCC-CcEEEEeCCCC
Q 005277          615 STGFLFYSLTIIYFGCASC---EGSLLASGSAD-CTVKLWDVTTS  655 (704)
Q Consensus       615 ~~~~~~~~~~~~~~~~~s~---~g~~lasgs~D-g~V~iWd~~~~  655 (704)
                                       +|   +|++|++++.+ +.|.+|++...
T Consensus       315 -----------------sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          315 -----------------SPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             -----------------EECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             -----------------cCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence                             88   89999988864 89999998764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.80  E-value=8.3e-19  Score=199.58  Aligned_cols=226  Identities=11%  Similarity=0.034  Sum_probs=168.5

Q ss_pred             ccCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeEEeecCC-cCeeEEEEcCCCCEEEEEeC---CCeEEEEECCC-
Q 005277          421 SGPVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASSSH---DRTARIWSMDR-  494 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~-Dg~I~lwd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~l~sgs~---dg~i~lwd~~~-  494 (704)
                      ..+|++++|+|||+.|++++. ||+++||++.++.. ..+..|. ..+..+.|+|+ +.+++++.   +....+|.++. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            568999999999999998876 99999999975554 4444454 68999999999 77777765   45566665533 


Q ss_pred             -CceeEEeccCCCCeeEEEEcCCCCE-EEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC----
Q 005277          495 -IQPLRIMAGHLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED----  568 (704)
Q Consensus       495 -~~~~~~~~~~~~~V~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d----  568 (704)
                       ......+... ..+...+|+|+++. +++.+.++.+.+||+.+++.......+.   .+++|||||++|++++.+    
T Consensus        99 ~~g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~  174 (582)
T 3o4h_A           99 RPGEEQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGR  174 (582)
T ss_dssp             STTCCEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTE
T ss_pred             CCCccccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCC
Confidence             2222233322 34556788888853 3344455556699999998766554433   789999999999988777    


Q ss_pred             CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC--c
Q 005277          569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC--T  646 (704)
Q Consensus       569 g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg--~  646 (704)
                      +.|++||+.+++.. .+..|.+.+.++.|                                  ||||+.|++++.+|  .
T Consensus       175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~----------------------------------SpDG~~l~~~~~~~~~~  219 (582)
T 3o4h_A          175 VSLFTSNLSSGGLR-VFDSGEGSFSSASI----------------------------------SPGMKVTAGLETAREAR  219 (582)
T ss_dssp             EEEEEEETTTCCCE-EECCSSCEEEEEEE----------------------------------CTTSCEEEEEECSSCEE
T ss_pred             eEEEEEcCCCCCce-EeecCCCccccceE----------------------------------CCCCCEEEEccCCCeeE
Confidence            78999999888754 67788888999999                                  99999999888888  8


Q ss_pred             EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEE--------EccCCcEEEEeecCCC
Q 005277          647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ--------FSRRNLLFAAGALSKT  703 (704)
Q Consensus       647 V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~--------fs~~g~~La~gs~dgt  703 (704)
                      |++||+.++...                .+..+...+..+.        |+|||.++++++.+++
T Consensus       220 i~~~d~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~  268 (582)
T 3o4h_A          220 LVTVDPRDGSVE----------------DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR  268 (582)
T ss_dssp             EEEECTTTCCEE----------------ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTE
T ss_pred             EEEEcCCCCcEE----------------EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCc
Confidence            999999876542                2223333444444        9999998898888774

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.79  E-value=8.5e-18  Score=196.90  Aligned_cols=237  Identities=13%  Similarity=0.151  Sum_probs=171.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc-----cCeEEEE
Q 005277          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-----GPVYSAS  428 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~l~  428 (704)
                      ..+++|+|||.+++++  ||.|++|++.+...                            ...+.+|.     ....+++
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~   68 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNS----------------------------SVFLENSTFDEFGHSINDYS   68 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCE----------------------------EEEECTTTTTTCCSCCCEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCce----------------------------EEEEechhhhhhcccccceE
Confidence            5578999999999987  99999999876322                            22233333     2334589


Q ss_pred             EcCCCCEEEEEeCC---------CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277          429 FSPLGDFILSSSAD---------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       429 ~sp~~~~l~s~s~D---------g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      |||||++|+.++.+         +.+.+||+.+++.. .+..|...+...+|||||+.+|.+. ++.|++|++.++...+
T Consensus        69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~  146 (740)
T 4a5s_A           69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR  146 (740)
T ss_dssp             ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred             ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE
Confidence            99999999988876         56679999988754 4666778899999999999999884 6899999998877554


Q ss_pred             Eec-cCCCCe-----------------eEEEEcCCCCEEEEEECCC----------------------------------
Q 005277          500 IMA-GHLSDV-----------------DCVRWHINCNYIATGSSDK----------------------------------  527 (704)
Q Consensus       500 ~~~-~~~~~V-----------------~~v~~~p~~~~l~tgs~dg----------------------------------  527 (704)
                      ... ++...+                 ..+.|+|||++|+.++.|.                                  
T Consensus       147 lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~  226 (740)
T 4a5s_A          147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNP  226 (740)
T ss_dssp             CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCC
T ss_pred             EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCC
Confidence            322 222222                 3589999999999876332                                  


Q ss_pred             --cEEEEeCCC---C---cEEEEee-----cCCCCEEEEEEecCCCEEEEEeC----CCeEEEEeCCCCe----ee--ee
Q 005277          528 --TVRLWDVSS---G---ECVRIFI-----GHRSMILSLAMSPDGRYMASGDE----DGTIMMWDLASGR----CV--TP  584 (704)
Q Consensus       528 --~I~iwd~~~---~---~~~~~~~-----~h~~~i~~l~~spdg~~l~sg~~----dg~I~iwdl~~~~----~~--~~  584 (704)
                        +|++||+.+   +   +......     +|...+..++|+|||+.++....    +..|.+||+.+++    +.  ..
T Consensus       227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~  306 (740)
T 4a5s_A          227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ  306 (740)
T ss_dssp             EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC
T ss_pred             eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE
Confidence              488899988   7   4443322     37778999999999997766532    3479999999887    22  22


Q ss_pred             e--cCCCceee-----eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEE-EEeC-CC--cEEEEeCC
Q 005277          585 L--MGHTSCVW-----TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA-SGSA-DC--TVKLWDVT  653 (704)
Q Consensus       585 ~--~~h~~~V~-----sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~la-sgs~-Dg--~V~iWd~~  653 (704)
                      +  .+|...|.     +..|                                  +|||+.|+ ..+. +|  .|++||+.
T Consensus       307 l~~~~~~~~v~~~~~~~p~f----------------------------------spDG~~l~~~~s~~~G~~~l~~~~~~  352 (740)
T 4a5s_A          307 HIEMSTTGWVGRFRPSEPHF----------------------------------TLDGNSFYKIISNEEGYRHICYFQID  352 (740)
T ss_dssp             EEEECSSSCSSSSSCCCCEE----------------------------------CTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred             eeeccCCceEccCcCCCceE----------------------------------cCCCCEEEEEEEcCCCceEEEEEECC
Confidence            2  44555444     5566                                  99999876 6653 34  57888887


Q ss_pred             CCc
Q 005277          654 TST  656 (704)
Q Consensus       654 ~~~  656 (704)
                      ++.
T Consensus       353 ~~~  355 (740)
T 4a5s_A          353 KKD  355 (740)
T ss_dssp             CSS
T ss_pred             CCc
Confidence            654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.79  E-value=2.8e-18  Score=184.23  Aligned_cols=276  Identities=9%  Similarity=-0.031  Sum_probs=179.8

Q ss_pred             EEEEEEcCCCCEEEEEeCC-C--cEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          354 LNCASISQDGSLVAGGFSD-S--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~d-g--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      +.+++|||||++||.+... |  .|.+|++.+..                            ......++......+.|+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~----------------------------~~~l~~~~~~~~~~~~~s   89 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ----------------------------AVQLTEGKGDNTFGGFIS   89 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE----------------------------EEECCCSSCBCTTTCEEC
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc----------------------------EEEeecCCCCccccceEC
Confidence            6778999999998887653 3  57777765421                            111111222223347899


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeE-------------------EEEcCCCCEEEEE-----eCCCe
Q 005277          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD-------------------VQFNPQGHYFASS-----SHDRT  486 (704)
Q Consensus       431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~-------------------v~~sp~~~~l~sg-----s~dg~  486 (704)
                      |++++|+.++.++.|++|++.+++.......+......                   +.|+|+++.++.+     ..+..
T Consensus        90 pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~  169 (396)
T 3c5m_A           90 TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCR  169 (396)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred             CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcce
Confidence            99999999999999999999988776666544442222                   3567777766554     35678


Q ss_pred             EEEEECCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEECC------CcEEEEeCCCCcEEEEeecC-CCCEEEEEEecC
Q 005277          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSD------KTVRLWDVSSGECVRIFIGH-RSMILSLAMSPD  558 (704)
Q Consensus       487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~h-~~~i~~l~~spd  558 (704)
                      |.+||+.+++..... .+...+..+.|+| ++..|+..+.+      ..|.+||+.+++........ ...+..++|+|+
T Consensus       170 l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spd  248 (396)
T 3c5m_A          170 LIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPD  248 (396)
T ss_dssp             EEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTT
T ss_pred             EEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCC
Confidence            999999988765554 4667889999999 78877776643      36889998766544333211 235888999999


Q ss_pred             CCEEEEEeCC-----CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277          559 GRYMASGDED-----GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC  633 (704)
Q Consensus       559 g~~l~sg~~d-----g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  633 (704)
                      |++|+.++.+     +.|++||+.+++........ . .. +.|                                  ++
T Consensus       249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~----------------------------------s~  291 (396)
T 3c5m_A          249 GSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS-HLM----------------------------------SN  291 (396)
T ss_dssp             SSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE-EEE----------------------------------EC
T ss_pred             CCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC-CCc----------------------------------cC
Confidence            9988776543     45999999888654322211 1 11 556                                  88


Q ss_pred             -CCCEEEEEe----------------CCCcEEEEeCCCCccccccccccCcccccccccc-CCCCcCeEEEEEccCCcEE
Q 005277          634 -EGSLLASGS----------------ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL-PTKSTPVYSLQFSRRNLLF  695 (704)
Q Consensus       634 -~g~~lasgs----------------~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~V~~l~fs~~g~~L  695 (704)
                       +|+++++++                .++.|++||+.++....-......      +..+ ......+..+.|+|+|..|
T Consensus       292 ~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~s~dg~~l  365 (396)
T 3c5m_A          292 FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTS------WDVLDGDRQITHPHPSFTPNDDGV  365 (396)
T ss_dssp             SSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCC------CCCBTTBSSTTCCCCEECTTSSEE
T ss_pred             CCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCc------cccccccccCCCCCceEccCCCeE
Confidence             999888765                347899999987643110000000      0000 0001125567899999988


Q ss_pred             EEeecC
Q 005277          696 AAGALS  701 (704)
Q Consensus       696 a~gs~d  701 (704)
                      +.++..
T Consensus       366 ~~~s~~  371 (396)
T 3c5m_A          366 LFTSDF  371 (396)
T ss_dssp             EEEECT
T ss_pred             EEEecC
Confidence            877654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.79  E-value=1.8e-17  Score=191.48  Aligned_cols=282  Identities=12%  Similarity=0.008  Sum_probs=187.9

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEE--eCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          347 FINTHNGLNCASISQDGSLVAGG--FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg--~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      +..|...|.+++|++++-+++.+  ..++...||.....+.                            ...+..|...+
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------------~~~l~~~~~~~   70 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA----------------------------EESALPAPWNV   70 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC----------------------------EEESSCTTCCB
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC----------------------------cceeCCCCccc
Confidence            34567789999999887777777  5588999998632111                            12222233333


Q ss_pred             E---------EEEEc--CCCCE-EEEEeC-CCeEEEEeCC--CCceeEEeec-----CCcCeeEEEEcCCCCEEEEEeCC
Q 005277          425 Y---------SASFS--PLGDF-ILSSSA-DTTIRLWSTK--LNANLVCYKG-----HNYPVWDVQFNPQGHYFASSSHD  484 (704)
Q Consensus       425 ~---------~l~~s--p~~~~-l~s~s~-Dg~I~lwd~~--~~~~~~~~~~-----h~~~V~~v~~sp~~~~l~sgs~d  484 (704)
                      .         ...|+  ||++. |+.++. +..|.+|++.  .......+..     |...+.+++|+|+|+.|++++.+
T Consensus        71 ~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~  150 (662)
T 3azo_A           71 RNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEE  150 (662)
T ss_dssp             CCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEE
T ss_pred             cccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEec
Confidence            3         44454  99998 775543 5567777765  2034455555     66788999999999999998876


Q ss_pred             ----------CeEEEEECCC------CceeEEec-cCCCCeeEEEEcCCCCEEEEEECC--------CcEEEEeCC-CC-
Q 005277          485 ----------RTARIWSMDR------IQPLRIMA-GHLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVS-SG-  537 (704)
Q Consensus       485 ----------g~i~lwd~~~------~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~d--------g~I~iwd~~-~~-  537 (704)
                                ..|++||+.+      +.. ..+. .+...+..++|+|||++|+.++.+        ..|++||+. ++ 
T Consensus       151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~  229 (662)
T 3azo_A          151 FTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR  229 (662)
T ss_dssp             ECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred             ccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence                      5899999988      444 4455 556778889999999999988755        379999998 57 


Q ss_pred             --cEEEEeecCCCCEEEEEEecCCCEEEEEeCCC--eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccc
Q 005277          538 --ECVRIFIGHRSMILSLAMSPDGRYMASGDEDG--TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDK  613 (704)
Q Consensus       538 --~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg--~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~  613 (704)
                        +......+|...+..++|+|||+++++++.+|  .|.+||+.+++.......+ ..+....|.+..            
T Consensus       230 ~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~p~w~~~~------------  296 (662)
T 3azo_A          230 FADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE-EEFAGPLWTPGM------------  296 (662)
T ss_dssp             EEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS-SBSSCCCCSTTC------------
T ss_pred             ccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc-ccccCccccccC------------
Confidence              55555555678899999999999888888888  6777777677654443333 222222220000            


Q ss_pred             cccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC--CCCccccccccccCccccccccccCCCCcCeEEE-EEcc
Q 005277          614 VSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV--TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL-QFSR  690 (704)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l-~fs~  690 (704)
                                   ....+++++.++++++. +.++||.+  .++.                +..+..+...+..+ +++.
T Consensus       297 -------------~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~----------------~~~l~~~~~~~~~~~s~~~  346 (662)
T 3azo_A          297 -------------RWFAPLANGLIAVVHGK-GAAVLGILDPESGE----------------LVDAAGPWTEWAATLTVSG  346 (662)
T ss_dssp             -------------CSEEECTTSCEEEEEBS-SSCEEEEEETTTTE----------------EEECCSSCCEEEEEEEEET
T ss_pred             -------------ceEeEeCCCEEEEEEEc-CccEEEEEECCCCc----------------EEEecCCCCeEEEEEecCC
Confidence                         00011789999999999 99999954  3332                22344445566666 5555


Q ss_pred             CCcEEEEeec
Q 005277          691 RNLLFAAGAL  700 (704)
Q Consensus       691 ~g~~La~gs~  700 (704)
                      +..++++++.
T Consensus       347 ~~~~~~~~~~  356 (662)
T 3azo_A          347 TRAVGVAASP  356 (662)
T ss_dssp             TEEEEEEEET
T ss_pred             CEEEEEEcCC
Confidence            5555555543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.78  E-value=3.1e-17  Score=175.16  Aligned_cols=234  Identities=10%  Similarity=0.040  Sum_probs=163.4

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeEEeec-CCcCeeEEEEcCCCCE--EEEEe-------------C
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTK-LNANLVCYKG-HNYPVWDVQFNPQGHY--FASSS-------------H  483 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~-~~~~~~~~~~-h~~~V~~v~~sp~~~~--l~sgs-------------~  483 (704)
                      ...+..++|+|++++|++++.+ +|.+|++. +++....... ..+.+.+++|+|+|++  +++++             .
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            3467889999999999999888 99999997 6765433221 1123567999999994  45553             6


Q ss_pred             CCeEEEEECC-CCceeEEec----cCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCC-CCcEE--EEee--cCCCCEEE
Q 005277          484 DRTARIWSMD-RIQPLRIMA----GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVS-SGECV--RIFI--GHRSMILS  552 (704)
Q Consensus       484 dg~i~lwd~~-~~~~~~~~~----~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~-~~~~~--~~~~--~h~~~i~~  552 (704)
                      +|++.+|+++ .++....+.    .+...+.+++|+|+|+++++++. ++.|++||+. +++..  ..+.  .|...+..
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~  197 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence            8999999997 455443333    24567999999999999888764 6799999998 77653  2233  24567999


Q ss_pred             EEEecCCCEEEEEeC-CCeEEEEeCC--CCeee------eeec----CCCc------eeeeee-eeeeehcccccccccc
Q 005277          553 LAMSPDGRYMASGDE-DGTIMMWDLA--SGRCV------TPLM----GHTS------CVWTLA-YRFLLLVTNAYLKISD  612 (704)
Q Consensus       553 l~~spdg~~l~sg~~-dg~I~iwdl~--~~~~~------~~~~----~h~~------~V~sl~-~~~~~~~~~~~~~~~~  612 (704)
                      ++|+|+|++|++++. ++.|.+|++.  +++..      ..+.    +|..      .+..+. |               
T Consensus       198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~---------------  262 (365)
T 1jof_A          198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL---------------  262 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE---------------
T ss_pred             eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEE---------------
Confidence            999999999988775 7899999765  45532      1121    1121      456666 6               


Q ss_pred             ccccceeeeeeeEEeecccCCCCCEEEEEeCC-C-----cEEEEeCCCCccccccccccCcccccccc-ccCCCCcCeEE
Q 005277          613 KVSTGFLFYSLTIIYFGCASCEGSLLASGSAD-C-----TVKLWDVTTSTKVLKTEEKSGTNRLRSLK-TLPTKSTPVYS  685 (704)
Q Consensus       613 ~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D-g-----~V~iWd~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~V~~  685 (704)
                                         +|+|++|++++.+ +     +|.+|++......            ..+. ....+...+..
T Consensus       263 -------------------spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~------------~~~~~~~~~~~~~~~~  311 (365)
T 1jof_A          263 -------------------TFSGKYMFASSRANKFELQGYIAGFKLRDCGSI------------EKQLFLSPTPTSGGHS  311 (365)
T ss_dssp             -------------------CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE------------EEEEEEEECSSCCTTC
T ss_pred             -------------------CCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE------------EEeeeeeecCCCCccc
Confidence                               9999988776643 2     8999999632111            1111 12233445667


Q ss_pred             EEEcc---CCcEEEEeecC
Q 005277          686 LQFSR---RNLLFAAGALS  701 (704)
Q Consensus       686 l~fs~---~g~~La~gs~d  701 (704)
                      ++|+|   +|.+|++++.+
T Consensus       312 ~a~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          312 NAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             CCEEECTTCTTEEEEECSS
T ss_pred             ceecCCCcCCCEEEEEEcC
Confidence            89999   79999988765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.78  E-value=9.7e-18  Score=176.60  Aligned_cols=255  Identities=9%  Similarity=0.058  Sum_probs=170.1

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCC-cCeeEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeEEecc
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFA-SSSHDRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~l~-sgs~dg~i~lwd~~~~~~~~~~~~  503 (704)
                      ++++++++.++++++.+++|.+||+.+++.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.+..+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678888899999999999999999998888777543 2578999999998655 555789999999999888776653


Q ss_pred             CC------CCeeEEEEcCCCCEEEEEECC------------CcEEEEeCCCCc---EEEEeecCCCCEEEEEEecCCCEE
Q 005277          504 HL------SDVDCVRWHINCNYIATGSSD------------KTVRLWDVSSGE---CVRIFIGHRSMILSLAMSPDGRYM  562 (704)
Q Consensus       504 ~~------~~V~~v~~~p~~~~l~tgs~d------------g~I~iwd~~~~~---~~~~~~~h~~~i~~l~~spdg~~l  562 (704)
                      +.      ..+.+++|+|+|+++++++.+            +.|.+||+.+++   .+..+. +...+.+++|+|+|+ +
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence            22      237899999999999998865            899999998854   334443 334688999999999 6


Q ss_pred             EEEeCCCeEEEEeCCCCeeeeeecCCCc------------------------eeeeeeeeeee----hcc-cccccc-cc
Q 005277          563 ASGDEDGTIMMWDLASGRCVTPLMGHTS------------------------CVWTLAYRFLL----LVT-NAYLKI-SD  612 (704)
Q Consensus       563 ~sg~~dg~I~iwdl~~~~~~~~~~~h~~------------------------~V~sl~~~~~~----~~~-~~~~~~-~~  612 (704)
                      ++++.  .|.+||+.+++.+..+..+..                        ....+.+....    ... ...... ..
T Consensus       162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence            66544  499999999988776653320                        01111110000    000 000000 00


Q ss_pred             ccccceee----eeeeEEeecccCC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEE
Q 005277          613 KVSTGFLF----YSLTIIYFGCASC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ  687 (704)
Q Consensus       613 ~~~~~~~~----~~~~~~~~~~~s~-~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~  687 (704)
                      ........    .....+...+++| ++++++++  ++.|.+||+.+++..               ..+.. ...+.+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~---------------~~~~~-~~~~~~~~  301 (349)
T 1jmx_B          240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI---------------KAANL-DHTYYCVA  301 (349)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE---------------EEEEC-SSCCCEEE
T ss_pred             ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE---------------EEEcC-CCCccceE
Confidence            00000000    0001233445689 99999888  889999999886532               12211 23467899


Q ss_pred             EccCCcEEEEeecCC
Q 005277          688 FSRRNLLFAAGALSK  702 (704)
Q Consensus       688 fs~~g~~La~gs~dg  702 (704)
                      |+|+|..|++++.++
T Consensus       302 ~s~dg~~l~~~~~~~  316 (349)
T 1jmx_B          302 FDKKGDKLYLGGTFN  316 (349)
T ss_dssp             ECSSSSCEEEESBSS
T ss_pred             ECCCCCEEEEecCCC
Confidence            999998888776554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=2.3e-16  Score=165.85  Aligned_cols=239  Identities=14%  Similarity=0.130  Sum_probs=182.3

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCC------------------------cEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277          352 NGLNCASISQDGSLVAGGFSDS------------------------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~dg------------------------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (704)
                      +.+.+++++|+|++++++..++                        .|.+||..+.                        
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g------------------------   79 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA------------------------   79 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC------------------------
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC------------------------
Confidence            5689999999999999988884                        4555554321                        


Q ss_pred             CCCccceeec-cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEe---------ecCCcCeeEEEEcC-CC
Q 005277          408 NGRKRSYTLY-QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCY---------KGHNYPVWDVQFNP-QG  475 (704)
Q Consensus       408 ~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-~~~~~---------~~h~~~V~~v~~sp-~~  475 (704)
                          .....+ .++-....+++++|+++++++.+.++.|++|+..... .+..+         .++-....+|+++| ++
T Consensus        80 ----~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g  155 (329)
T 3fvz_A           80 ----EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG  155 (329)
T ss_dssp             ----CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC
T ss_pred             ----eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC
Confidence                111112 2344578899999999988888889999999987542 45544         23445688999999 78


Q ss_pred             CEEEEEe-CCCeEEEEECCCCceeEEecc----------CCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEe
Q 005277          476 HYFASSS-HDRTARIWSMDRIQPLRIMAG----------HLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIF  543 (704)
Q Consensus       476 ~~l~sgs-~dg~i~lwd~~~~~~~~~~~~----------~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~  543 (704)
                      .++++.+ .++.|++|+. .+..+..+..          +......++++|+ +.++++...++.|++||..+|+.+..+
T Consensus       156 ~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~  234 (329)
T 3fvz_A          156 AVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI  234 (329)
T ss_dssp             CEEEEECSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             eEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence            8888886 6999999994 5566666642          2234889999998 777777778899999999989988887


Q ss_pred             e--cCCCCEEEEEEecCCCEEEEE-------eCCCeEEEEeCCCCeeeeeec---CCCceeeeeeeeeeehccccccccc
Q 005277          544 I--GHRSMILSLAMSPDGRYMASG-------DEDGTIMMWDLASGRCVTPLM---GHTSCVWTLAYRFLLLVTNAYLKIS  611 (704)
Q Consensus       544 ~--~h~~~i~~l~~spdg~~l~sg-------~~dg~I~iwdl~~~~~~~~~~---~h~~~V~sl~~~~~~~~~~~~~~~~  611 (704)
                      .  .+...+.+++|+| |..+++.       ..+..|++||+.+++.+..+.   ++......+++              
T Consensus       235 ~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~--------------  299 (329)
T 3fvz_A          235 KHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVA--------------  299 (329)
T ss_dssp             CCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEE--------------
T ss_pred             eccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEE--------------
Confidence            4  4566789999999 4443333       345589999999999888873   55666778887              


Q ss_pred             cccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          612 DKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                                          +++|.++++...++.|++|++..
T Consensus       300 --------------------~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          300 --------------------SEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             --------------------CTTSEEEEEESSSCCEEEEEEEE
T ss_pred             --------------------CCCCCEEEEECCCCEEEEEeCCc
Confidence                                99998889999999999999864

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.76  E-value=6.7e-16  Score=158.48  Aligned_cols=242  Identities=10%  Similarity=0.184  Sum_probs=179.1

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE-c
Q 005277          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF-S  430 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-s  430 (704)
                      ..+.+++++++++++++...++.|.+|+..... .....                      ......+|...+.++++ .
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~-~~~~~----------------------~~~~~~~~~~~p~~i~~~~   86 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF-KFQFG----------------------ECGKRDSQLLYPNRVAVVR   86 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE-EEEEC----------------------CBSSSTTCBSSEEEEEEET
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCCCcE-EEEec----------------------ccCCCcccccCceEEEEEc
Confidence            468999999999999998889999999975311 00000                      00001235567889999 4


Q ss_pred             CCCCEEEEEeC-CCeEEEEeCCCCceeEEeec-CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--cCCC
Q 005277          431 PLGDFILSSSA-DTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHLS  506 (704)
Q Consensus       431 p~~~~l~s~s~-Dg~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~--~~~~  506 (704)
                      +++.++++... ++.|.+|+ .+++.+..+.. +...+.+++++|+|+++++...++.|.+||.+ ++.+..+.  .+..
T Consensus        87 ~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~  164 (286)
T 1q7f_A           87 NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLE  164 (286)
T ss_dssp             TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCS
T ss_pred             CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccC
Confidence            67766666543 78999999 45666666643 34578999999999988887788999999975 45555553  3456


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC--CCCEEEEEEecCCCEEEEEeCCC-eEEEEeCCCCeeee
Q 005277          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDG-TIMMWDLASGRCVT  583 (704)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~i~~l~~spdg~~l~sg~~dg-~I~iwdl~~~~~~~  583 (704)
                      .+.+++++|+++++++.+.++.|++||. +++.+..+..+  ...+..++++|+|+++++...++ .|.+||. +++.+.
T Consensus       165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~  242 (286)
T 1q7f_A          165 FPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLIS  242 (286)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEE
T ss_pred             CcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEE
Confidence            7899999999998888778999999997 56666666543  36789999999999888888776 9999995 566666


Q ss_pred             eecCCC--ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          584 PLMGHT--SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       584 ~~~~h~--~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                      .+..+.  ..+.++++                                  +++|+++++ +.|++|++|++...
T Consensus       243 ~~~~~~~~~~~~~i~~----------------------------------~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          243 ALESKVKHAQCFDVAL----------------------------------MDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEESSCCSCEEEEEE----------------------------------ETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEcccCCCCcceeEEE----------------------------------CCCCcEEEE-CCCCeEEEEEcccc
Confidence            665443  23556777                                  889987777 57999999998654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.75  E-value=3.6e-16  Score=165.01  Aligned_cols=249  Identities=10%  Similarity=0.101  Sum_probs=173.4

Q ss_pred             CEEEEEEcCCCCEEEEEe---------CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          353 GLNCASISQDGSLVAGGF---------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~---------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      .+...++  ||+.+|...         .++.|.+|++.+..                            . ..+    ..
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~----------------------------~-~~l----~~   60 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA----------------------------R-RFI----EN   60 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC----------------------------E-EEE----ES
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc----------------------------e-EEc----cc
Confidence            4566777  888887653         25678888876511                            1 112    56


Q ss_pred             eEEEEEcCCCCEEEEEeCC---C--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC--------------
Q 005277          424 VYSASFSPLGDFILSSSAD---T--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD--------------  484 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~D---g--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d--------------  484 (704)
                      +.+++|+|||++|+.++.+   +  .|.+|++.+++.......+ . +..+.|+|+|+.|+.++.+              
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~  138 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP  138 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence            8899999999999877653   3  4788888877665544433 3 9999999999998888642              


Q ss_pred             -------------CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCC-------cEEEEeCCCCcEEEEee
Q 005277          485 -------------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK-------TVRLWDVSSGECVRIFI  544 (704)
Q Consensus       485 -------------g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg-------~I~iwd~~~~~~~~~~~  544 (704)
                                   ..|.+||+.+++.+..+.. . .+..+.|+|+| ++++++.++       ...+|.+.+++... +.
T Consensus       139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-l~  214 (347)
T 2gop_A          139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEK-MF  214 (347)
T ss_dssp             CC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEE-EE
T ss_pred             eeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEE-ec
Confidence                         5799999998876445544 3 78899999999 777776542       33444444555443 43


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCC--------CeEEEEeCCCCeeeeeecCCCceeee-eeeeeeehccccccccccccc
Q 005277          545 GHRSMILSLAMSPDGRYMASGDED--------GTIMMWDLASGRCVTPLMGHTSCVWT-LAYRFLLLVTNAYLKISDKVS  615 (704)
Q Consensus       545 ~h~~~i~~l~~spdg~~l~sg~~d--------g~I~iwdl~~~~~~~~~~~h~~~V~s-l~~~~~~~~~~~~~~~~~~~~  615 (704)
                      .+ ..+..+  +|||++|+.++.+        ..|.+||  +++.......|...+.. +.|                  
T Consensus       215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~------------------  271 (347)
T 2gop_A          215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIK------------------  271 (347)
T ss_dssp             EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEE------------------
T ss_pred             cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEE------------------
Confidence            44 555554  9999998887744        4788888  66655555667777876 778                  


Q ss_pred             cceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEE
Q 005277          616 TGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF  695 (704)
Q Consensus       616 ~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~L  695 (704)
                                      + ++ ++++++.++.++|| +.++..                ..+..+...|.+++|+|  .++
T Consensus       272 ----------------s-dg-~~~~~~~~~~~~l~-~~~g~~----------------~~~~~~~~~v~~~~~s~--~~~  314 (347)
T 2gop_A          272 ----------------D-GK-VYFTLFEEGSVNLY-IWDGEI----------------KPIAKGRHWIMGFDVDE--IVV  314 (347)
T ss_dssp             ----------------T-TE-EEEEEEETTEEEEE-EESSSE----------------EEEECSSSEEEEEEESS--SEE
T ss_pred             ----------------c-Cc-EEEEEecCCcEEEE-EcCCce----------------EEEecCCCeEEeeeeeC--cEE
Confidence                            8 88 99999999999999 873321                11222356789999999  455


Q ss_pred             EEeecCC
Q 005277          696 AAGALSK  702 (704)
Q Consensus       696 a~gs~dg  702 (704)
                      ++++.++
T Consensus       315 ~~~~~~~  321 (347)
T 2gop_A          315 YLKETAT  321 (347)
T ss_dssp             EEEECSS
T ss_pred             EEEcCCC
Confidence            5555544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.74  E-value=5.7e-16  Score=162.63  Aligned_cols=273  Identities=11%  Similarity=0.038  Sum_probs=188.7

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      ..|.++.|++++..++....++.++.|.-                               .....+.++...+.+++|+|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   54 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITA-------------------------------EPWLEISKKGLQLEGLNFDR   54 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEEC-------------------------------EEEEEEESSCCCEEEEEECT
T ss_pred             cccceeeecCCccceeEEeecccCccccc-------------------------------ceeEEEeccCccccCcEECC
Confidence            45778889999888877778888888831                               12334445666779999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC----CeEEEEECCCCceeEEec--cCC
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRIQPLRIMA--GHL  505 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d----g~i~lwd~~~~~~~~~~~--~~~  505 (704)
                      ++++++++..++.|.+||..+++.......+...+.+++|+|+|+++++...+    +.|.+||.++......+.  .+.
T Consensus        55 ~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  134 (333)
T 2dg1_A           55 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA  134 (333)
T ss_dssp             TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence            99987788889999999999877655444567789999999999988777666    689999998876554433  244


Q ss_pred             CCeeEEEEcCCCCEEEEEEC------CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE-EeCCCeEEEEeCCC
Q 005277          506 SDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS-GDEDGTIMMWDLAS  578 (704)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s-g~~dg~I~iwdl~~  578 (704)
                      ..+.+++++|+|+++++...      .+.|..||..+++..... .+...+..++|+|+|+.|+. .+.++.|.+||+.+
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            57899999999987776653      356777776655544332 33345789999999986654 45678999999864


Q ss_pred             -Ceeeeee--------cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          579 -GRCVTPL--------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       579 -~~~~~~~--------~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                       +..+..+        .++ ..+..+.+                                  +++|+++++...++.|.+
T Consensus       214 ~g~~~~~~~~~~~~~~~~~-~~~~~i~~----------------------------------d~~G~l~v~~~~~~~v~~  258 (333)
T 2dg1_A          214 DGVTIQPFGATIPYYFTGH-EGPDSCCI----------------------------------DSDDNLYVAMYGQGRVLV  258 (333)
T ss_dssp             TSSSEEEEEEEEEEECCSS-SEEEEEEE----------------------------------BTTCCEEEEEETTTEEEE
T ss_pred             CCcCcccccceEEEecCCC-CCCCceEE----------------------------------CCCCCEEEEEcCCCEEEE
Confidence             3322211        111 23344444                                  889998888888899999


Q ss_pred             EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                      ||.. +.....+...         ....++...+.+++|+|++..|.+++.+
T Consensus       259 ~d~~-g~~~~~~~~~---------~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          259 FNKR-GYPIGQILIP---------GRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             ECTT-SCEEEEEECT---------TGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             ECCC-CCEEEEEEcC---------CCccccccCcceEEECCCCCEEEEEeCc
Confidence            9984 3321111000         0000112257899999998666655554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.73  E-value=1.4e-15  Score=159.83  Aligned_cols=235  Identities=14%  Similarity=0.176  Sum_probs=179.9

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCC------------------------CeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCC
Q 005277          421 SGPVYSASFSPLGDFILSSSAD------------------------TTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQG  475 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~D------------------------g~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~  475 (704)
                      -+.+.+++++|+|+++++.+.+                        ++|.+||..+++.+..+. ++-.....++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3679999999999988888777                        479999999888776654 344578899999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCc-eeEEe---------ccCCCCeeEEEEcC-CCCEEEEEE-CCCcEEEEeCCCCcEEEEe
Q 005277          476 HYFASSSHDRTARIWSMDRIQ-PLRIM---------AGHLSDVDCVRWHI-NCNYIATGS-SDKTVRLWDVSSGECVRIF  543 (704)
Q Consensus       476 ~~l~sgs~dg~i~lwd~~~~~-~~~~~---------~~~~~~V~~v~~~p-~~~~l~tgs-~dg~I~iwd~~~~~~~~~~  543 (704)
                      +++++.+.++.|++||.+... .+..+         .++......++++| ++.++++.+ .++.|++|| .++..+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888889999999986542 45555         24455788999999 788888886 699999999 677777776


Q ss_pred             ecCC----------CCEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCeeeeeec--CCCceeeeeeeeeeehcccccccc
Q 005277          544 IGHR----------SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLM--GHTSCVWTLAYRFLLLVTNAYLKI  610 (704)
Q Consensus       544 ~~h~----------~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~~~~~~~--~h~~~V~sl~~~~~~~~~~~~~~~  610 (704)
                      ....          .....++++|+ |.++++...++.|++||..+++.+..+.  .+...+..+.+             
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~-------------  248 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISY-------------  248 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEE-------------
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeee-------------
Confidence            4322          34899999998 7777888889999999999898888774  45566777777             


Q ss_pred             ccccccceeeeeeeEEeecccCC------CCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeE
Q 005277          611 SDKVSTGFLFYSLTIIYFGCASC------EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY  684 (704)
Q Consensus       611 ~~~~~~~~~~~~~~~~~~~~~s~------~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~  684 (704)
                                           +|      +|+..++.+.++.|++|+..+++.+...            .....+...+.
T Consensus       249 ---------------------~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~------------~~~~~~~~~p~  295 (329)
T 3fvz_A          249 ---------------------IPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF------------KPVRKHFDMPH  295 (329)
T ss_dssp             ---------------------ETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE------------CCSSSCCSSEE
T ss_pred             ---------------------cCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE------------cCCCCccCCee
Confidence                                 44      4444444455679999999887643221            11134556689


Q ss_pred             EEEEccCCcEEEEeecCC
Q 005277          685 SLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       685 ~l~fs~~g~~La~gs~dg  702 (704)
                      .|+|+|+|.++++...++
T Consensus       296 ~ia~~~dG~lyvad~~~~  313 (329)
T 3fvz_A          296 DIVASEDGTVYIGDAHTN  313 (329)
T ss_dssp             EEEECTTSEEEEEESSSC
T ss_pred             EEEECCCCCEEEEECCCC
Confidence            999999998888776654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=1e-16  Score=187.79  Aligned_cols=142  Identities=15%  Similarity=0.255  Sum_probs=113.4

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcC-----eeEEEEcCCCCEEEEEeCC---------CeE
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP-----VWDVQFNPQGHYFASSSHD---------RTA  487 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~-----V~~v~~sp~~~~l~sgs~d---------g~i  487 (704)
                      ....++.|+|++++++++  ||+|++||+.++++...+.+|...     ..++.|||||++++.++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            346689999999988886  899999999999988888877643     2448899999999999876         566


Q ss_pred             EEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-ecCCCCE----------------
Q 005277          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMI----------------  550 (704)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~i----------------  550 (704)
                      .+||+.+++... +..|...+...+|+|||+.||.+. ++.|++||+.++...+.. .++...+                
T Consensus        95 ~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           95 DIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence            799999987543 566778899999999999999985 789999999988765532 2333223                


Q ss_pred             -EEEEEecCCCEEEEEeC
Q 005277          551 -LSLAMSPDGRYMASGDE  567 (704)
Q Consensus       551 -~~l~~spdg~~l~sg~~  567 (704)
                       ..+.|||||++|+.++.
T Consensus       173 ~~~~~wSpDg~~la~~~~  190 (740)
T 4a5s_A          173 YSALWWSPNGTFLAYAQF  190 (740)
T ss_dssp             SBCEEECTTSSEEEEEEE
T ss_pred             CcceEECCCCCEEEEEEE
Confidence             34899999999998753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.72  E-value=2.1e-15  Score=160.75  Aligned_cols=221  Identities=11%  Similarity=0.045  Sum_probs=153.7

Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeecC------CcCeeEEEEcCCCCEEEE
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH------NYPVWDVQFNPQGHYFAS  480 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s----------~Dg~I~lwd~~~~~~~~~~~~h------~~~V~~v~~sp~~~~l~s  480 (704)
                      +..+..+  .++|+|+++++++++          .+++|.+||..+.+.+..+...      ......++|+|+|+++++
T Consensus        47 i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v  124 (361)
T 2oiz_A           47 VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVL  124 (361)
T ss_dssp             EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEE
T ss_pred             ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEE
Confidence            3445555  899999999999886          3678999999998888777632      345678999999999998


Q ss_pred             EeC--CCeEEEEECCCCceeEE-eccCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCC-CcEE---------------
Q 005277          481 SSH--DRTARIWSMDRIQPLRI-MAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSS-GECV---------------  540 (704)
Q Consensus       481 gs~--dg~i~lwd~~~~~~~~~-~~~~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~-~~~~---------------  540 (704)
                      +..  +++|.+||+.+.+.+.. +... . ...+.+.|++ ..+++.+.||.+.+|++.. ++..               
T Consensus       125 ~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~  202 (361)
T 2oiz_A          125 QNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP  202 (361)
T ss_dssp             EEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC
T ss_pred             ECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc
Confidence            874  68999999999887776 4321 1 1123334433 3444444455554444432 2211               


Q ss_pred             ----------------------------------EEeec------CC----CCEEEEEEecCCCEEEEEeC---------
Q 005277          541 ----------------------------------RIFIG------HR----SMILSLAMSPDGRYMASGDE---------  567 (704)
Q Consensus       541 ----------------------------------~~~~~------h~----~~i~~l~~spdg~~l~sg~~---------  567 (704)
                                                        ..+..      +.    .....++|+|+++.++++..         
T Consensus       203 ~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~  282 (361)
T 2oiz_A          203 IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHK  282 (361)
T ss_dssp             BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTT
T ss_pred             eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccccc
Confidence                                              11000      00    00112688999888777643         


Q ss_pred             --CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277          568 --DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC  645 (704)
Q Consensus       568 --dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg  645 (704)
                        .+.|.+||+.+++.+.++..+.  ++++.|                                  +|+|++|++++. +
T Consensus       283 ~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~----------------------------------spdg~~l~v~n~-~  325 (361)
T 2oiz_A          283 FPAAEIWVMDTKTKQRVARIPGRD--ALSMTI----------------------------------DQQRNLMLTLDG-G  325 (361)
T ss_dssp             CCCSEEEEEETTTTEEEEEEECTT--CCEEEE----------------------------------ETTTTEEEEECS-S
T ss_pred             CCCceEEEEECCCCcEEEEEecCC--eeEEEE----------------------------------CCCCCEEEEeCC-C
Confidence              3489999999999999998777  888888                                  999999998887 9


Q ss_pred             cEEEEeCCCC--ccccccccccCccccccccccCCCCcCeEEEEEccCCc
Q 005277          646 TVKLWDVTTS--TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL  693 (704)
Q Consensus       646 ~V~iWd~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~  693 (704)
                      +|.+||..++  +.               +.++.........+.|+|+|.
T Consensus       326 ~v~v~D~~t~~l~~---------------~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          326 NVNVYDISQPEPKL---------------LRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CEEEEECSSSSCEE---------------EEEETTSCSSEEEEEECCCSC
T ss_pred             eEEEEECCCCccee---------------eEEeccCCCCcEEEEecCCCC
Confidence            9999999887  43               344444556678899999985

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.70  E-value=9.5e-16  Score=176.94  Aligned_cols=174  Identities=10%  Similarity=0.069  Sum_probs=133.8

Q ss_pred             CccCeEEEEEcCCCCEEEEEeCC----------CeEEEEeCCCC-----ceeEEee-cCCcCeeEEEEcCCCCEEEEEeC
Q 005277          420 HSGPVYSASFSPLGDFILSSSAD----------TTIRLWSTKLN-----ANLVCYK-GHNYPVWDVQFNPQGHYFASSSH  483 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~D----------g~I~lwd~~~~-----~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~  483 (704)
                      |...+.+++|+|||+.|++++.+          .+|++||+.+.     .....+. .+...+..++|+|||++|+.++.
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~  207 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAW  207 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEEC
Confidence            66788999999999999988877          58999999872     3344555 56677889999999999998875


Q ss_pred             C--------CeEEEEECC-CC---ceeEEeccCCCCeeEEEEcCCCCEEEEEECCC--cEEEEeCCCCcEEEEeecCCCC
Q 005277          484 D--------RTARIWSMD-RI---QPLRIMAGHLSDVDCVRWHINCNYIATGSSDK--TVRLWDVSSGECVRIFIGHRSM  549 (704)
Q Consensus       484 d--------g~i~lwd~~-~~---~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg--~I~iwd~~~~~~~~~~~~h~~~  549 (704)
                      +        ..|.+||++ ++   .......++...+..+.|+|+|+++++++.++  .|.+||+.+++.......+...
T Consensus       208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~  287 (662)
T 3azo_A          208 DHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF  287 (662)
T ss_dssp             CTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBS
T ss_pred             CCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccc
Confidence            5        379999998 56   44455555678899999999999888888888  6777777677765544333222


Q ss_pred             --------EEEEEEecCCCEEEEEeCCCeEEEE--eCCCCeeeeeecCCCceeeee
Q 005277          550 --------ILSLAMSPDGRYMASGDEDGTIMMW--DLASGRCVTPLMGHTSCVWTL  595 (704)
Q Consensus       550 --------i~~l~~spdg~~l~sg~~dg~I~iw--dl~~~~~~~~~~~h~~~V~sl  595 (704)
                              +.+++|+|+++++++++. +.++||  |+.+++ +..+..|...+..+
T Consensus       288 ~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~  341 (662)
T 3azo_A          288 AGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT  341 (662)
T ss_dssp             SCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE
T ss_pred             cCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE
Confidence                    567899999999999998 999999  655555 56677777666655

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.70  E-value=3.3e-15  Score=174.08  Aligned_cols=240  Identities=10%  Similarity=0.047  Sum_probs=176.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCC-----cEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          353 GLNCASISQDGSLVAGGFSDS-----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~dg-----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      .+.+++|||||++||.+..++     .|++||+.+...                            ..... ....+.++
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~----------------------------~~~~~-~~~~~~~~  176 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE----------------------------LPDVL-ERVKFSCM  176 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE----------------------------EEEEE-EEECSCCE
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC----------------------------Ccccc-cCcccceE
Confidence            588999999999999887644     899999876221                            11111 11236789


Q ss_pred             EEcCCCCEEEEEeCCCe----------------EEEEeCCCCce--eEEeec--CCcCeeEEEEcCCCCEEEEEeC----
Q 005277          428 SFSPLGDFILSSSADTT----------------IRLWSTKLNAN--LVCYKG--HNYPVWDVQFNPQGHYFASSSH----  483 (704)
Q Consensus       428 ~~sp~~~~l~s~s~Dg~----------------I~lwd~~~~~~--~~~~~~--h~~~V~~v~~sp~~~~l~sgs~----  483 (704)
                      +|+|||+.|+.++.++.                |++|++.++..  ...+..  |...+..+.|+|+|++++.++.    
T Consensus       177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~  256 (710)
T 2xdw_A          177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD  256 (710)
T ss_dssp             EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred             EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence            99999999998888766                99999988763  233333  4556789999999999888764    


Q ss_pred             -CCeEEEEECCC------Cc-eeEEeccCCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCCc--EEEEeecCCC-
Q 005277          484 -DRTARIWSMDR------IQ-PLRIMAGHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGE--CVRIFIGHRS-  548 (704)
Q Consensus       484 -dg~i~lwd~~~------~~-~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~~--~~~~~~~h~~-  548 (704)
                       +..|.+||+.+      +. ....+..+...+.. .|+|+|+.|+..+..    +.|.+||+.++.  ....+..|.. 
T Consensus       257 ~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  335 (710)
T 2xdw_A          257 PVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK  335 (710)
T ss_dssp             SCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred             CccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC
Confidence             67899999976      43 45566666666655 488999888877653    359999998774  2344445544 


Q ss_pred             -CEEEEEEecCCCEEEEEeCCCe--EEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277          549 -MILSLAMSPDGRYMASGDEDGT--IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI  625 (704)
Q Consensus       549 -~i~~l~~spdg~~l~sg~~dg~--I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (704)
                       .+..++|++++.++++...++.  |.+||+.+++.+..+..+.+.+..+.+                            
T Consensus       336 ~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~----------------------------  387 (710)
T 2xdw_A          336 DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG----------------------------  387 (710)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEEC----------------------------
T ss_pred             CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEec----------------------------
Confidence             6888999988888888888884  666787778877788777778888877                            


Q ss_pred             EeecccCCCCCEEEEE-e---CCCcEEEEeCCCCc
Q 005277          626 IYFGCASCEGSLLASG-S---ADCTVKLWDVTTST  656 (704)
Q Consensus       626 ~~~~~~s~~g~~lasg-s---~Dg~V~iWd~~~~~  656 (704)
                            ++++..++.. +   ..++|++||+.+++
T Consensus       388 ------s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          388 ------QKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ------CTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ------CCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence                  8888766533 2   35789999998766

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.69  E-value=1.5e-13  Score=141.05  Aligned_cols=271  Identities=10%  Similarity=0.040  Sum_probs=193.0

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      +..+...+.+++++++|+++++...++.|.+|+... ...                           ......+...+.+
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~-~~~---------------------------~~~~~~~~~~~~~   61 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLDG-KIT---------------------------EYPLPTPDAKVMC   61 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEE---------------------------EEECSSTTCCEEE
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCCC-CeE---------------------------EecCCcccCceee
Confidence            344557899999999999888776688999998652 100                           0111123467899


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE-ecc
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAG  503 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~-~~~  503 (704)
                      +++.+++.++++...++.|..|+.. +. ...+.  .....+.++++.++|.++++...++.|..||. +++.... ...
T Consensus        62 i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~  138 (299)
T 2z2n_A           62 LTISSDGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPN  138 (299)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             EEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCC
Confidence            9999999988877778899999986 33 23332  24557899999999988887777889999998 4443332 233


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE-eecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~  582 (704)
                      ....+.++++.+++++.++...++.|..||. +++.... ...+...+.+++++++|++.++...++.|.+||. +++..
T Consensus       139 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~  216 (299)
T 2z2n_A          139 KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT  216 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred             CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE
Confidence            4567899999999988777767789999999 7765543 2334557889999999997777777889999998 66543


Q ss_pred             ee-ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277          583 TP-LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT  661 (704)
Q Consensus       583 ~~-~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~  661 (704)
                      .. ...+...+.++.+                                  +++|+++++...++.|.+||.. +. ..  
T Consensus       217 ~~~~~~~~~~~~~i~~----------------------------------~~~g~l~v~~~~~~~i~~~d~~-g~-~~--  258 (299)
T 2z2n_A          217 EFKIPTPNARPHAITA----------------------------------GAGIDLWFTEWGANKIGRLTSN-NI-IE--  258 (299)
T ss_dssp             EEECSSTTCCEEEEEE----------------------------------CSTTCEEEEETTTTEEEEEETT-TE-EE--
T ss_pred             EEECCCCCCCceeEEE----------------------------------CCCCCEEEeccCCceEEEECCC-Cc-eE--
Confidence            22 2234455667766                                  8889877777678899999983 32 11  


Q ss_pred             ccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277          662 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       662 ~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~  700 (704)
                                 ...++.....+.++.+ ++|.+.++...
T Consensus       259 -----------~~~~~~~~~~~~~i~~-~~g~l~v~~~~  285 (299)
T 2z2n_A          259 -----------EYPIQIKSAEPHGICF-DGETIWFAMEC  285 (299)
T ss_dssp             -----------EEECSSSSCCEEEEEE-CSSCEEEEETT
T ss_pred             -----------EEeCCCCCCccceEEe-cCCCEEEEecC
Confidence                       1112334467899999 98888777543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.69  E-value=7e-15  Score=151.77  Aligned_cols=238  Identities=12%  Similarity=0.050  Sum_probs=175.2

Q ss_pred             EeeCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          347 FINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      +..+.....+++|+|+|+ +++++..++.|..|+..+.                              ...+..+...+.
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~------------------------------~~~~~~~~~~~~   72 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ------------------------------LSPEMHPSHHQN   72 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC------------------------------EEEEESSCSSEE
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC------------------------------eEEEECCCCCcc
Confidence            344556688999999998 8888989999999997641                              233344667799


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC----CcCeeEEEEcCCCCEEEEEeC-----------------C
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGHYFASSSH-----------------D  484 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h----~~~V~~v~~sp~~~~l~sgs~-----------------d  484 (704)
                      +++++|+++++++...++.|.+||..+++........    ...+.+++++|+|+++++.+.                 .
T Consensus        73 ~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~  152 (296)
T 3e5z_A           73 GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPG  152 (296)
T ss_dssp             EEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred             eeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCC
Confidence            9999999998877777789999999877754433221    234678999999998887321                 2


Q ss_pred             CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCcE---EEEeecCCCCEEEEEEecCCC
Q 005277          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGEC---VRIFIGHRSMILSLAMSPDGR  560 (704)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~---~~~~~~h~~~i~~l~~spdg~  560 (704)
                      +.|..++.+ + .+..+..+......++|+|+++.+++.+.++.|++||+. ++..   ...+..+...+.+++++++|+
T Consensus       153 ~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          153 RWVFRLAPD-G-TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL  230 (296)
T ss_dssp             CEEEEECTT-S-CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred             cEEEEECCC-C-CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence            455555554 3 344455566778999999999999777778999999997 5554   334434555678899999998


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE
Q 005277          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS  640 (704)
Q Consensus       561 ~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las  640 (704)
                      ++++.  ++.|.+||.. ++.+..+..+.. +.++.|.                                 +++++.|++
T Consensus       231 l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~---------------------------------~~d~~~L~v  273 (296)
T 3e5z_A          231 IWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFG---------------------------------GPEGRTLYM  273 (296)
T ss_dssp             EEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEE---------------------------------STTSCEEEE
T ss_pred             EEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEE---------------------------------CCCCCEEEE
Confidence            66665  7889999986 777777877776 7788772                                 578888888


Q ss_pred             EeCCCcEEEEeCCC
Q 005277          641 GSADCTVKLWDVTT  654 (704)
Q Consensus       641 gs~Dg~V~iWd~~~  654 (704)
                      ++.++ +.-++..+
T Consensus       274 ~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          274 TVSTE-FWSIETNV  286 (296)
T ss_dssp             EETTE-EEEEECSC
T ss_pred             EcCCe-EEEEEccc
Confidence            88763 44444444

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.69  E-value=2.5e-15  Score=160.95  Aligned_cols=209  Identities=13%  Similarity=0.050  Sum_probs=157.3

Q ss_pred             ceeeccCCccCeEE-----EEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC
Q 005277          413 SYTLYQGHSGPVYS-----ASFSPLGDFILSSSA-DT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (704)
Q Consensus       413 ~~~~~~~h~~~V~~-----l~~sp~~~~l~s~s~-Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d  484 (704)
                      ....+..|...+..     .+|+|||++|+.++. +|  .|.+||+.+++......++...+..+.|+|+|+.|+.++.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            34455566655555     889999999998877 67  48888999888777677776666678999999999999999


Q ss_pred             CeEEEEECCCCceeEEeccCCCCeeEEE--EcCCCCEEEEEE----------------------CCCcEEEEeCCCCcEE
Q 005277          485 RTARIWSMDRIQPLRIMAGHLSDVDCVR--WHINCNYIATGS----------------------SDKTVRLWDVSSGECV  540 (704)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~--~~p~~~~l~tgs----------------------~dg~I~iwd~~~~~~~  540 (704)
                      +.+++||+.+++....+..+...+....  ++|++.+++...                      .+..|++||+.+++..
T Consensus       102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~  181 (388)
T 3pe7_A          102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST  181 (388)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred             CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence            9999999999988777766665554444  489999887532                      3467999999998765


Q ss_pred             EEeecCCCCEEEEEEec-CCCEEEEEeCC------CeEEEEeCCCCeeeeeecCCC--ceeeeeeeeeeehccccccccc
Q 005277          541 RIFIGHRSMILSLAMSP-DGRYMASGDED------GTIMMWDLASGRCVTPLMGHT--SCVWTLAYRFLLLVTNAYLKIS  611 (704)
Q Consensus       541 ~~~~~h~~~i~~l~~sp-dg~~l~sg~~d------g~I~iwdl~~~~~~~~~~~h~--~~V~sl~~~~~~~~~~~~~~~~  611 (704)
                      .. ..+...+..++|+| ||+.|+.+..+      ..|.++|+..+... .+..+.  ..+....|              
T Consensus       182 ~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~--------------  245 (388)
T 3pe7_A          182 VI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFW--------------  245 (388)
T ss_dssp             EE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEE--------------
T ss_pred             Ee-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceE--------------
Confidence            54 45667899999999 99998877653      37888887765443 343333  35677778              


Q ss_pred             cccccceeeeeeeEEeecccCCCCCEEEEEeC-CC----cEEEEeCCCCcc
Q 005277          612 DKVSTGFLFYSLTIIYFGCASCEGSLLASGSA-DC----TVKLWDVTTSTK  657 (704)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~-Dg----~V~iWd~~~~~~  657 (704)
                                          +|+|+.|+..+. ++    .|++||+.+++.
T Consensus       246 --------------------spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          246 --------------------VPDGSALVYVSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             --------------------CTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred             --------------------CCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence                                999997765443 22    399999988763

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.69  E-value=4.8e-15  Score=156.29  Aligned_cols=223  Identities=12%  Similarity=0.087  Sum_probs=158.0

Q ss_pred             CCEEEEEEcCCCCEEEEEeCC---Cc--EEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          352 NGLNCASISQDGSLVAGGFSD---SS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~d---g~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      ..+.+++|||||+.||.++.+   +.  |.+|++.+.                            .... +..+.. +.+
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g----------------------------~~~~-l~~~~~-~~~  108 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL----------------------------SSKK-ILEAKN-IRS  108 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT----------------------------EEEE-EEEESE-EEE
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC----------------------------ceEE-EEcCCC-ccc
Confidence            468899999999999988764   34  556665531                            1111 122233 899


Q ss_pred             EEEcCCCCEEEEEeCC---------------------------CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEE
Q 005277          427 ASFSPLGDFILSSSAD---------------------------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA  479 (704)
Q Consensus       427 l~~sp~~~~l~s~s~D---------------------------g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  479 (704)
                      ++|+|+++.|+.++.+                           ..|.+||+.+++.+..+.. . .+..+.|+|+| +++
T Consensus       109 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~  185 (347)
T 2gop_A          109 LEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVV  185 (347)
T ss_dssp             EEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEE
T ss_pred             eeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEE
Confidence            9999999988877632                           5799999998876455544 3 78899999999 777


Q ss_pred             EEeCCC-------eEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECC--------CcEEEEeCCCCcEEEEee
Q 005277          480 SSSHDR-------TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIFI  544 (704)
Q Consensus       480 sgs~dg-------~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d--------g~I~iwd~~~~~~~~~~~  544 (704)
                      +++.++       ...||.+++++ ...+..+ ..+..+  +|+|++|+.++.+        ..|.+||  +++......
T Consensus       186 ~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~  259 (347)
T 2gop_A          186 NVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD  259 (347)
T ss_dssp             EEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST
T ss_pred             EEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc
Confidence            776542       44555554444 3444434 444444  8999999887754        3688888  666655555


Q ss_pred             cCCCCEEE-EEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeee
Q 005277          545 GHRSMILS-LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL  623 (704)
Q Consensus       545 ~h~~~i~~-l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (704)
                      ++...+.. +.|+ +| ++++++.++.++|| +.+++.. .+..+...|.++.|                          
T Consensus       260 ~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~--------------------------  309 (347)
T 2gop_A          260 EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDV--------------------------  309 (347)
T ss_dssp             TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEE--------------------------
T ss_pred             cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeee--------------------------
Confidence            66778886 9999 88 88999999999999 8766553 34445778888888                          


Q ss_pred             eEEeecccCCCCCEEEEEeCCCcE-EEEeCC
Q 005277          624 TIIYFGCASCEGSLLASGSADCTV-KLWDVT  653 (704)
Q Consensus       624 ~~~~~~~~s~~g~~lasgs~Dg~V-~iWd~~  653 (704)
                              ++  .++++++.++.. .||.+.
T Consensus       310 --------s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          310 --------DE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             --------SS--SEEEEEECSSSCCEEEEES
T ss_pred             --------eC--cEEEEEcCCCChHHheEeC
Confidence                    88  677888777765 777765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.68  E-value=1.2e-14  Score=147.52  Aligned_cols=240  Identities=9%  Similarity=0.020  Sum_probs=173.4

Q ss_pred             CEEEEEEcCCCCEEE-EEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          353 GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       353 ~V~~~~fs~dg~~la-sg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      ...+++++++|++++ +...++.|.+|+......                            ......+...+.++++++
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~----------------------------~~~~~~~~~~p~~i~~~~   76 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT----------------------------TVLPFNGLYQPQGLAVDG   76 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC---------------------------------EECCCCSCCSCCCEEECT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCccc----------------------------ceEeeCCcCCcceeEECC
Confidence            678899999999777 557789999998653110                            001112334577899999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeE
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC  510 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~  510 (704)
                      +++++++.. ++.|.+||...... ..+. .....+.+++++++|+.+++...++.|.+|+..+.............+.+
T Consensus        77 ~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~  154 (270)
T 1rwi_B           77 AGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDG  154 (270)
T ss_dssp             TCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCC
T ss_pred             CCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCcee
Confidence            998666655 88999999876543 3332 23356889999999998877777899999987655443333334456789


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCc
Q 005277          511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS  590 (704)
Q Consensus       511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~  590 (704)
                      ++++|+++++++...++.|.+||...+........+...+.+++++++|..+++...++.|.+||............+..
T Consensus       155 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~  234 (270)
T 1rwi_B          155 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN  234 (270)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCS
T ss_pred             EEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCC
Confidence            99999999777776788999999887765543334446789999999998777777788999999876543332222334


Q ss_pred             eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          591 CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       591 ~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                      .+.++.+                                  +++|+++++...++.|++++....+
T Consensus       235 ~p~~i~~----------------------------------~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          235 TPLAVAV----------------------------------DSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CEEEEEE----------------------------------CTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CceeEEE----------------------------------CCCCCEEEEECCCCEEEEEcCCCcc
Confidence            5667777                                  8999988999999999999987654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.68  E-value=2.5e-14  Score=146.69  Aligned_cols=231  Identities=11%  Similarity=0.178  Sum_probs=170.6

Q ss_pred             CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee------cCCcCeeEEEE-cCCCCEEEEEeC-CCeEEEE
Q 005277          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK------GHNYPVWDVQF-NPQGHYFASSSH-DRTARIW  490 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~------~h~~~V~~v~~-sp~~~~l~sgs~-dg~i~lw  490 (704)
                      ++-..+.+++++++++++++.+.++.|.+||.. ++.+..+.      ++...+.++++ .+++.++++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            455678999999999988888889999999987 66665553      23456889999 467776666543 8999999


Q ss_pred             ECCCCceeEEec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCCCEEEEEeC
Q 005277          491 SMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       491 d~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      | .+++.+..+. .+...+.+++++|+++++++...++.|.+||. .++.+..+.  .+...+.+++++|+|+++++...
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            9 4566666554 34467899999999998888778899999996 466666654  34457899999999998888888


Q ss_pred             CCeEEEEeCCCCeeeeeecCC--CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277          568 DGTIMMWDLASGRCVTPLMGH--TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC  645 (704)
Q Consensus       568 dg~I~iwdl~~~~~~~~~~~h--~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg  645 (704)
                      ++.|.+||. .++.+..+..+  ...+..+++                                  +++|+++++...++
T Consensus       184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~----------------------------------d~~G~l~v~~~~~~  228 (286)
T 1q7f_A          184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGI----------------------------------NSNGEILIADNHNN  228 (286)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEEEE----------------------------------CTTCCEEEEECSSS
T ss_pred             CCEEEEEcC-CCCEEEEEccCCccCCCcEEEE----------------------------------CCCCCEEEEeCCCC
Confidence            999999997 45566666433  245666766                                  89999998888886


Q ss_pred             -cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          646 -TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       646 -~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                       .|.+|+.. +..+..            +.. ......+.+++|+|+|.++++ +.++
T Consensus       229 ~~i~~~~~~-g~~~~~------------~~~-~~~~~~~~~i~~~~~g~l~vs-~~~~  271 (286)
T 1q7f_A          229 FNLTIFTQD-GQLISA------------LES-KVKHAQCFDVALMDDGSVVLA-SKDY  271 (286)
T ss_dssp             CEEEEECTT-SCEEEE------------EEE-SSCCSCEEEEEEETTTEEEEE-ETTT
T ss_pred             EEEEEECCC-CCEEEE------------Ecc-cCCCCcceeEEECCCCcEEEE-CCCC
Confidence             99999954 322111            111 112234789999999998887 4443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.66  E-value=2e-14  Score=148.26  Aligned_cols=231  Identities=16%  Similarity=0.069  Sum_probs=169.3

Q ss_pred             eeccCCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005277          415 TLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (704)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~  493 (704)
                      ..+..+.....+++|+|+++ +++++..++.|..|+..++  ...+..+...+.+++++|+|+++++...++.|.+||..
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            34445566788999999998 7778888999999999977  66677777889999999999988777777899999998


Q ss_pred             CCceeEEeccC----CCCeeEEEEcCCCCEEEEE----E-------------CCCcEEEEeCCCCcEEEEeecCCCCEEE
Q 005277          494 RIQPLRIMAGH----LSDVDCVRWHINCNYIATG----S-------------SDKTVRLWDVSSGECVRIFIGHRSMILS  552 (704)
Q Consensus       494 ~~~~~~~~~~~----~~~V~~v~~~p~~~~l~tg----s-------------~dg~I~iwd~~~~~~~~~~~~h~~~i~~  552 (704)
                      +++........    ...+..++++|+|+++++.    +             ..+.|..++.. ++ +..+..+......
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~g  176 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNG  176 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEE
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCcc
Confidence            77654443221    2356789999999988873    2             13456666654 44 3445566677899


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCC-CCee---eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277          553 LAMSPDGRYMASGDEDGTIMMWDLA-SGRC---VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF  628 (704)
Q Consensus       553 l~~spdg~~l~sg~~dg~I~iwdl~-~~~~---~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (704)
                      ++|+|+|+.|++.+.++.|.+||+. +++.   ...+..+...+..+.+                               
T Consensus       177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~-------------------------------  225 (296)
T 3e5z_A          177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRV-------------------------------  225 (296)
T ss_dssp             EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEE-------------------------------
T ss_pred             EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEE-------------------------------
Confidence            9999999999777888999999987 4543   2233233444556666                               


Q ss_pred             cccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEE-ccCCcEEEEeecCC
Q 005277          629 GCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF-SRRNLLFAAGALSK  702 (704)
Q Consensus       629 ~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~f-s~~g~~La~gs~dg  702 (704)
                         +++|+++++.  ++.|.+|+.. +..               +..+..+.. +.+++| +|++..|.+++.++
T Consensus       226 ---d~~G~l~v~~--~~~v~~~~~~-g~~---------------~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          226 ---DAGGLIWASA--GDGVHVLTPD-GDE---------------LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             ---BTTSCEEEEE--TTEEEEECTT-SCE---------------EEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             ---CCCCCEEEEc--CCeEEEECCC-CCE---------------EEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence               8999877766  7899999976 322               333444444 889999 58988888877654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=2.4e-14  Score=166.69  Aligned_cols=229  Identities=11%  Similarity=0.041  Sum_probs=164.3

Q ss_pred             CCccCeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe-------
Q 005277          419 GHSGPVYSASFSPLGDFILSSSADT-----TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT-------  486 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~~l~s~s~Dg-----~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~-------  486 (704)
                      +|...+.+++|||||++|+.++.++     +|++||+.+++.+.....+ ..+.+++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            4555788999999999998665433     8999999998876543322 23678999999999999988766       


Q ss_pred             ---------EEEEECCCCce--eEEecc--CCCCeeEEEEcCCCCEEEEEEC-----CCcEEEEeCCC------Cc-EEE
Q 005277          487 ---------ARIWSMDRIQP--LRIMAG--HLSDVDCVRWHINCNYIATGSS-----DKTVRLWDVSS------GE-CVR  541 (704)
Q Consensus       487 ---------i~lwd~~~~~~--~~~~~~--~~~~V~~v~~~p~~~~l~tgs~-----dg~I~iwd~~~------~~-~~~  541 (704)
                               |++|++.++..  ...+..  |...+..+.|+|+|++|+.++.     +..|++||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     99999988763  233333  4455789999999999988764     56899999986      53 355


Q ss_pred             EeecCCCCEEEEEEecCCCEEEEEeCC----CeEEEEeCCCCee--eeeecCCCc--eeeeeeeeeeehccccccccccc
Q 005277          542 IFIGHRSMILSLAMSPDGRYMASGDED----GTIMMWDLASGRC--VTPLMGHTS--CVWTLAYRFLLLVTNAYLKISDK  613 (704)
Q Consensus       542 ~~~~h~~~i~~l~~spdg~~l~sg~~d----g~I~iwdl~~~~~--~~~~~~h~~--~V~sl~~~~~~~~~~~~~~~~~~  613 (704)
                      .+..+...+.. .|+|+|+.|+..+..    +.|.+||+.++..  ...+..|..  .+..+.|                
T Consensus       281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~----------------  343 (710)
T 2xdw_A          281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVAC----------------  343 (710)
T ss_dssp             EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEE----------------
T ss_pred             EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEE----------------
Confidence            56666666655 588999988776653    3699999987742  344444543  6777777                


Q ss_pred             cccceeeeeeeEEeecccCCCCCEEEEEeCCCc--EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccC
Q 005277          614 VSTGFLFYSLTIIYFGCASCEGSLLASGSADCT--VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR  691 (704)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~--V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~  691 (704)
                                        ++++.+++++..|+.  |.+|++.++..               +..+..+...|..+.++|+
T Consensus       344 ------------------~~~~~lv~~~~~~g~~~l~~~~~~~g~~---------------~~~l~~~~~~v~~~~~s~d  390 (710)
T 2xdw_A          344 ------------------VRSNFLVLCYLHDVKNTLQLHDLATGAL---------------LKIFPLEVGSVVGYSGQKK  390 (710)
T ss_dssp             ------------------ETTTEEEEEEEETTEEEEEEEETTTCCE---------------EEEECCCSSEEEEEECCTT
T ss_pred             ------------------EcCCEEEEEEEECCEEEEEEEECCCCCE---------------EEecCCCCceEEEEecCCC
Confidence                              767778888888885  55566655432               1223334567888999998


Q ss_pred             CcEEEEe
Q 005277          692 NLLFAAG  698 (704)
Q Consensus       692 g~~La~g  698 (704)
                      +..++..
T Consensus       391 ~~~l~~~  397 (710)
T 2xdw_A          391 DTEIFYQ  397 (710)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEE
Confidence            8766544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.65  E-value=2.3e-13  Score=142.68  Aligned_cols=224  Identities=10%  Similarity=0.086  Sum_probs=159.6

Q ss_pred             EEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (704)
Q Consensus       343 ~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (704)
                      ....+..+...+.+++|+++|++++++..++.|.+|+..+..                            .......+..
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~----------------------------~~~~~~~~~~   87 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE----------------------------IKRPFVSHKA   87 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC----------------------------EEEEEECSSS
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc----------------------------EEEEeeCCCC
Confidence            344556677788999999999988889899999999976421                            1111223557


Q ss_pred             CeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEEee--cCCcCeeEEEEcCCCCEEEEEeC------CCeEEEE
Q 005277          423 PVYSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSH------DRTARIW  490 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~D----g~I~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~l~sgs~------dg~i~lw  490 (704)
                      .+.+++|+|++++++++..+    +.|.+||..++.....+.  .+...+.++.++|+|+++++...      .+.|..|
T Consensus        88 ~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~  167 (333)
T 2dg1_A           88 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV  167 (333)
T ss_dssp             SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred             CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEE
Confidence            89999999999988777766    689999998776543332  24457899999999987776653      3556666


Q ss_pred             ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCC-CcEEEE--------eecCCCCEEEEEEecCCC
Q 005277          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSS-GECVRI--------FIGHRSMILSLAMSPDGR  560 (704)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~~~-~~~~~~--------~~~h~~~i~~l~~spdg~  560 (704)
                      +.++++.... ..+...+.+++|+|++++|+++ +.++.|.+||+.+ +..+..        +.++ ..+..++++++|+
T Consensus       168 ~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~  245 (333)
T 2dg1_A          168 SPDFRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN  245 (333)
T ss_dssp             CTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC
T ss_pred             eCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC
Confidence            6655444333 2334567899999999866554 4578999999964 332221        1122 4678899999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeeeeecCCCc------eeeeeee
Q 005277          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTS------CVWTLAY  597 (704)
Q Consensus       561 ~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~------~V~sl~~  597 (704)
                      ++++...++.|.+||. .++.+..+..+..      .+.++.|
T Consensus       246 l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~  287 (333)
T 2dg1_A          246 LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQF  287 (333)
T ss_dssp             EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEE
T ss_pred             EEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEE
Confidence            8888878899999998 5666666654432      5777777

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.64  E-value=1.1e-14  Score=169.34  Aligned_cols=241  Identities=14%  Similarity=0.031  Sum_probs=167.9

Q ss_pred             CCCEEEEEEcCCCCEEEE-----EeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          351 HNGLNCASISQDGSLVAG-----GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~las-----g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      ...+.+++|||||++||.     |+.+..|++||+.+.....                          ...+.+.  ...
T Consensus       120 ~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--------------------------~~~~~~~--~~~  171 (695)
T 2bkl_A          120 TVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--------------------------VDVIEGG--KYA  171 (695)
T ss_dssp             CEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--------------------------SCCBSCC--TTC
T ss_pred             CEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--------------------------CcccCcc--ccc
Confidence            346899999999999994     4445789999998632110                          0001111  125


Q ss_pred             EEEEcCCCCEEEEEeCCCe-------------EEEEeCCCCce--eEEe--ecCCcCeeEEEEcCCCCEEEEEeCCC---
Q 005277          426 SASFSPLGDFILSSSADTT-------------IRLWSTKLNAN--LVCY--KGHNYPVWDVQFNPQGHYFASSSHDR---  485 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~-------------I~lwd~~~~~~--~~~~--~~h~~~V~~v~~sp~~~~l~sgs~dg---  485 (704)
                      +++|+|||+.|+.++.|..             |++|++.++..  ...+  ..|...+.++.|+|+|++++.++.++   
T Consensus       172 ~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~  251 (695)
T 2bkl_A          172 TPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSE  251 (695)
T ss_dssp             CCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTE
T ss_pred             ceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCc
Confidence            7899999999999988776             99999998762  2333  34556788999999999998887666   


Q ss_pred             -eEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC----CCcEEEEeCCCCcE---EEEeecC-CCCEEEEEEe
Q 005277          486 -TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGEC---VRIFIGH-RSMILSLAMS  556 (704)
Q Consensus       486 -~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~----dg~I~iwd~~~~~~---~~~~~~h-~~~i~~l~~s  556 (704)
                       .|.+|+..++.. ..+..+...+....| +++. ++..+.    ++.|.+||+.++..   ...+..+ ...+..++|+
T Consensus       252 ~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~  328 (695)
T 2bkl_A          252 NDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV  328 (695)
T ss_dssp             EEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred             eEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence             677776655543 444445556666667 5666 544443    58899999987753   3333333 4568889998


Q ss_pred             cCCCEEEEEeCCCeEEEEeCC-CCeeeeeecCC-CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC
Q 005277          557 PDGRYMASGDEDGTIMMWDLA-SGRCVTPLMGH-TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE  634 (704)
Q Consensus       557 pdg~~l~sg~~dg~I~iwdl~-~~~~~~~~~~h-~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  634 (704)
                       ++.++++...|+..+||.+. +++....+..+ .+.+..+.+                                  +++
T Consensus       329 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~----------------------------------s~d  373 (695)
T 2bkl_A          329 -GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMG----------------------------------LED  373 (695)
T ss_dssp             -TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBS----------------------------------CTT
T ss_pred             -CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeec----------------------------------CCC
Confidence             77888899999988888654 45555656554 566777777                                  888


Q ss_pred             CCEEEEE----eCCCcEEEEeCCCCcc
Q 005277          635 GSLLASG----SADCTVKLWDVTTSTK  657 (704)
Q Consensus       635 g~~lasg----s~Dg~V~iWd~~~~~~  657 (704)
                      +..++..    ...++|++||+.+++.
T Consensus       374 ~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          374 LDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             CSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            8776633    2457899999988653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.62  E-value=4.1e-15  Score=159.42  Aligned_cols=224  Identities=11%  Similarity=0.042  Sum_probs=156.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277          423 PVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      .+.+++|+|||++|+.++..   ..|.+||+.+++......++......+.|+|+|++|+.++.++.|++||+.+++...
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence            36778999999998866443   468888998776544433333333348899999999999999999999999887766


Q ss_pred             EeccCCCCeeE-------------------EEEcCCCCEEEEE-----ECCCcEEEEeCCCCcEEEEeecCCCCEEEEEE
Q 005277          500 IMAGHLSDVDC-------------------VRWHINCNYIATG-----SSDKTVRLWDVSSGECVRIFIGHRSMILSLAM  555 (704)
Q Consensus       500 ~~~~~~~~V~~-------------------v~~~p~~~~l~tg-----s~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~  555 (704)
                      ....+......                   +.|+|+++.++.+     ..+..|++||+.+++..... .+...+..+.|
T Consensus       117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~  195 (396)
T 3c5m_A          117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIY  195 (396)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEE
T ss_pred             EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceE
Confidence            66544432222                   3456777766554     35678999999988876554 56678999999


Q ss_pred             ec-CCCEEEEEeCC------CeEEEEeCCCCeeeeeecCC-CceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277          556 SP-DGRYMASGDED------GTIMMWDLASGRCVTPLMGH-TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY  627 (704)
Q Consensus       556 sp-dg~~l~sg~~d------g~I~iwdl~~~~~~~~~~~h-~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (704)
                      +| +|+.|+..+.+      ..|.+||+.+++........ ...+..+.|                              
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~------------------------------  245 (396)
T 3c5m_A          196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFW------------------------------  245 (396)
T ss_dssp             ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEE------------------------------
T ss_pred             CCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEE------------------------------
Confidence            99 88877766543      46889998766533333321 235777788                              


Q ss_pred             ecccCCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc-CCcEEEEee
Q 005277          628 FGCASCEGSLLASGSAD-----CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RNLLFAAGA  699 (704)
Q Consensus       628 ~~~~s~~g~~lasgs~D-----g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~-~g~~La~gs  699 (704)
                          +|+|+.|+.++.+     +.|++||+.++...             .+..++.    .. +.|+| +|.++++++
T Consensus       246 ----spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-------------~l~~~~~----~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          246 ----IPDGSAMAYVSYFKGQTDRVIYKANPETLENE-------------EVMVMPP----CS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             ----CTTSSCEEEEEEETTTCCEEEEEECTTTCCEE-------------EEEECCS----EE-EEEECSSSSEEEEEE
T ss_pred             ----CCCCCEEEEEecCCCCccceEEEEECCCCCeE-------------EeeeCCC----CC-CCccCCCCceEEEec
Confidence                9999987777544     44999999876431             1222221    22 88999 999888765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.61  E-value=1.9e-13  Score=139.68  Aligned_cols=192  Identities=13%  Similarity=0.092  Sum_probs=153.6

Q ss_pred             CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc-cCeEEEEEcCCCCEEEEEe
Q 005277          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFSPLGDFILSSS  440 (704)
Q Consensus       362 dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~s  440 (704)
                      .+++|++++.++.|.+||..+.                            +....+..+. ..+.++.++|+|++++  +
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG----------------------------~~~w~~~~~~~~~~~~~~~~pdG~ilv--s   53 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTK----------------------------EIVWEYPLEKGWECNSVAATKAGEILF--S   53 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTT----------------------------EEEEEEECCTTCCCCEEEECTTSCEEE--E
T ss_pred             CCcEEEeeCCCCEEEEEECCCC----------------------------eEEEEeCCCccCCCcCeEECCCCCEEE--e
Confidence            4678999999999999997552                            2233333343 4678999999999888  4


Q ss_pred             CCCeEEEEeCCCCceeEEeecC-CcCeeEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEEecc------CCCCeeEEE
Q 005277          441 ADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRIMAG------HLSDVDCVR  512 (704)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~v~~sp~~~~l~sgs~-dg~i~lwd~~~~~~~~~~~~------~~~~V~~v~  512 (704)
                      .++.|..||. +++.+..+..+ ...+.++.+.++|+++++.+. ++.+..+|. +++.+..+..      +......++
T Consensus        54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~  131 (276)
T 3no2_A           54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN  131 (276)
T ss_dssp             CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred             CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence            5778999999 79999988865 357889999999999999887 788888886 5666655541      223455677


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC
Q 005277          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG  587 (704)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~  587 (704)
                      +.++|+++++...++.|..||.. |+.+..+..+ ..+.++.+.++|+.+++++.++.|..+|..+|+.+.++..
T Consensus       132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~  204 (276)
T 3no2_A          132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA  204 (276)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred             ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence            88999999999999999999987 9999988765 4556788899999999999889999999999999887753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.61  E-value=1.3e-13  Score=146.89  Aligned_cols=235  Identities=15%  Similarity=0.147  Sum_probs=155.0

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEEcccCCccccccccCCCCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS----------DSSLKVWDMAKLGQQAVSSGLQGENDTT  399 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~----------dg~I~iwdl~~~~~~~~~~~~~~~~~~~  399 (704)
                      ..+++++....... .++..+.. - .++|+|||++|+++..          ++.|.+||..+......           
T Consensus        31 ~~v~v~D~~t~~~~-~~i~~g~~-p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~-----------   96 (361)
T 2oiz_A           31 SRVHVYDYTNGKFL-GMVPTAFN-G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKE-----------   96 (361)
T ss_dssp             CEEEEEETTTCCEE-EEEECCEE-E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEE-----------
T ss_pred             CeEEEEECCCCeEE-EEecCCCC-C-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEE-----------
Confidence            35566654333222 22322322 3 8999999999998863          67899999865322111           


Q ss_pred             CcccccCCCCCccceeecc---CCccCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEE-eecCCcCeeEEEEcC
Q 005277          400 PREDIIGPNGRKRSYTLYQ---GHSGPVYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNP  473 (704)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~s~--Dg~I~lwd~~~~~~~~~-~~~h~~~V~~v~~sp  473 (704)
                                    +....   .+......++|+|+|++|+++..  +++|.+||+.+++.+.. +...  ..+.+.+.|
T Consensus        97 --------------i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p  160 (361)
T 2oiz_A           97 --------------ISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQP  160 (361)
T ss_dssp             --------------EEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECT
T ss_pred             --------------EEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcC
Confidence                          00000   12234567999999999998864  68999999999887776 4421  122344455


Q ss_pred             CC-CEEEEEeCCCeEEEEECCC-Ccee-------------------------------------------------EEec
Q 005277          474 QG-HYFASSSHDRTARIWSMDR-IQPL-------------------------------------------------RIMA  502 (704)
Q Consensus       474 ~~-~~l~sgs~dg~i~lwd~~~-~~~~-------------------------------------------------~~~~  502 (704)
                      ++ ..+++.+.||.+.+|+++. ++..                                                 ..+.
T Consensus       161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~  240 (361)
T 2oiz_A          161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS  240 (361)
T ss_dssp             TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE
T ss_pred             CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc
Confidence            43 4455555555555555432 1111                                                 0000


Q ss_pred             c------C----CCCeeEEEEcCCCCEEEEEEC-----------CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCE
Q 005277          503 G------H----LSDVDCVRWHINCNYIATGSS-----------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY  561 (704)
Q Consensus       503 ~------~----~~~V~~v~~~p~~~~l~tgs~-----------dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~  561 (704)
                      .      +    ......++|+|+++.++++..           .+.|.+||+.+++.+..+..+.  +.+++|+|||++
T Consensus       241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~  318 (361)
T 2oiz_A          241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNL  318 (361)
T ss_dssp             SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTE
T ss_pred             ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCE
Confidence            0      0    011112788999888877653           3479999999999999998776  899999999999


Q ss_pred             EEEEeCCCeEEEEeCCCC--eeeeeecCCCceeeeeee
Q 005277          562 MASGDEDGTIMMWDLASG--RCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       562 l~sg~~dg~I~iwdl~~~--~~~~~~~~h~~~V~sl~~  597 (704)
                      |++++. +.|.+||..++  +.+..+..+......+.+
T Consensus       319 l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~  355 (361)
T 2oiz_A          319 MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQF  355 (361)
T ss_dssp             EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEE
T ss_pred             EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEe
Confidence            998887 99999999999  999888767766677777

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.60  E-value=2.8e-14  Score=165.74  Aligned_cols=226  Identities=8%  Similarity=-0.050  Sum_probs=155.3

Q ss_pred             CCccCeEEEEEcCCCCEEE-----EEeCCCeEEEEeCCCCceeEEeecCCcCe--eEEEEcCCCCEEEEEeCCCe-----
Q 005277          419 GHSGPVYSASFSPLGDFIL-----SSSADTTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSSHDRT-----  486 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~~l~-----s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V--~~v~~sp~~~~l~sgs~dg~-----  486 (704)
                      +|...+.+++|||||++|+     +|+.+.+|++||+.+++.+.  ..+...+  ..++|+|+|+.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            5667899999999999988     33445789999999887651  1122222  68999999999999998776     


Q ss_pred             --------EEEEECCCCce--eEEec--cCCCCeeEEEEcCCCCEEEEEECCC----cEEEEeCCCCcEEEEeecCCCCE
Q 005277          487 --------ARIWSMDRIQP--LRIMA--GHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGECVRIFIGHRSMI  550 (704)
Q Consensus       487 --------i~lwd~~~~~~--~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg----~I~iwd~~~~~~~~~~~~h~~~i  550 (704)
                              |++|++.++..  ...+.  .+...+.++.|+|+|++|+.++.++    .|++||..++.... +..+...+
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~  274 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGVGAK  274 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEECSSCC
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eecCCCce
Confidence                    99999988762  23333  3456788999999999999887666    68888776665443 44555566


Q ss_pred             EEEEEecCCCEEEEEe---CCCeEEEEeCCCCee---eeeecCC-Cceeeeeeeeeeehccccccccccccccceeeeee
Q 005277          551 LSLAMSPDGRYMASGD---EDGTIMMWDLASGRC---VTPLMGH-TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL  623 (704)
Q Consensus       551 ~~l~~spdg~~l~sg~---~dg~I~iwdl~~~~~---~~~~~~h-~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (704)
                      ....+ ++|.+++++.   .++.|.+||+.++..   ...+..+ ...+..+.|                          
T Consensus       275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~--------------------------  327 (695)
T 2bkl_A          275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSI--------------------------  327 (695)
T ss_dssp             EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEE--------------------------
T ss_pred             EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEE--------------------------
Confidence            66666 6777444433   358999999987753   2233333 445666666                          


Q ss_pred             eEEeecccCCCCCEEEEEeCCCcEEEEeCCC-CccccccccccCccccccccccCCC-CcCeEEEEEccCCcEEEEe
Q 005277          624 TIIYFGCASCEGSLLASGSADCTVKLWDVTT-STKVLKTEEKSGTNRLRSLKTLPTK-STPVYSLQFSRRNLLFAAG  698 (704)
Q Consensus       624 ~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~~~V~~l~fs~~g~~La~g  698 (704)
                              + ++.+++++..|+..+||.+.. +..               +..+..+ ...|..++|+|++..++..
T Consensus       328 --------~-~~~lv~~~~~dg~~~l~~~~~~g~~---------------~~~l~~~~~~~v~~~~~s~d~~~l~~~  380 (695)
T 2bkl_A          328 --------V-GGHLSLEYLKDATSEVRVATLKGKP---------------VRTVQLPGVGAASNLMGLEDLDDAYYV  380 (695)
T ss_dssp             --------E-TTEEEEEEEETTEEEEEEEETTCCE---------------EEECCCSSSSEECCCBSCTTCSEEEEE
T ss_pred             --------E-CCEEEEEEEECCEEEEEEEeCCCCe---------------eEEecCCCCeEEEEeecCCCCCEEEEE
Confidence                    5 667889999999988887652 221               1122222 4456677778877665543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.59  E-value=9.5e-12  Score=127.56  Aligned_cols=270  Identities=10%  Similarity=0.022  Sum_probs=189.8

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      .....+.+++++++|++.++...++.|.+|+... ...                          . ..+..+...+.+++
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~~~--------------------------~-~~~~~~~~~~~~i~   68 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQSG-RIK--------------------------E-FEVPTPDAKVMCLI   68 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE--------------------------E-EECSSTTCCEEEEE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCCC-ceE--------------------------E-EECCCCCCcceeEE
Confidence            3456789999999999888877789999998651 100                          0 01112335688999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeE-EeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE-eccCCC
Q 005277          429 FSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLS  506 (704)
Q Consensus       429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~-~~~~~~  506 (704)
                      +.+++.++++...++.|..||.. ++... ........+.++++.++|.++++...++.|..||.+ ++.... +.....
T Consensus        69 ~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~  146 (300)
T 2qc5_A           69 VSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS  146 (300)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred             ECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC
Confidence            99999977777778899999988 54432 222234678999999999988877778899999987 544432 233456


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee-
Q 005277          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP-  584 (704)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~-  584 (704)
                      .+.++++.+++++.++...++.|..||. +++..... ..+...+.+++++++|++.++....+.|.+||. +++.... 
T Consensus       147 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~  224 (300)
T 2qc5_A          147 YPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD  224 (300)
T ss_dssp             CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred             CceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE
Confidence            7899999999996666666788999998 66554422 234457899999999987777777788999998 5544332 


Q ss_pred             ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccc
Q 005277          585 LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK  664 (704)
Q Consensus       585 ~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~  664 (704)
                      +..+...+.++.+                                  +++|++.++...++.|..|+.. +...      
T Consensus       225 ~~~~~~~~~~i~~----------------------------------d~~g~l~v~~~~~~~i~~~~~~-g~~~------  263 (300)
T 2qc5_A          225 IPTPNARPHAITA----------------------------------GKNSEIWFTEWGANQIGRITND-NTIQ------  263 (300)
T ss_dssp             CSSTTCCEEEEEE----------------------------------CSTTCEEEEETTTTEEEEECTT-SCEE------
T ss_pred             CCCCCCCceEEEE----------------------------------CCCCCEEEeccCCCeEEEECCC-CcEE------
Confidence            2333445666666                                  8889877777777999999983 3211      


Q ss_pred             cCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          665 SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       665 ~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                              ...++.....+.++.++++|.+.++..
T Consensus       264 --------~~~~~~~~~~~~~i~~~~~g~l~v~~~  290 (300)
T 2qc5_A          264 --------EYQLQTENAEPHGITFGKDGSVWFALK  290 (300)
T ss_dssp             --------EEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred             --------EEECCccCCccceeEeCCCCCEEEEcc
Confidence                    011222345578899999998777654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.58  E-value=3.3e-13  Score=136.72  Aligned_cols=230  Identities=9%  Similarity=0.040  Sum_probs=161.5

Q ss_pred             CeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          423 PVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      ...++++++++++++ +.+.++.|.+|+..+.........+...+.+++++++|+++++.. ++.|.+||.+........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            678999999999666 447789999999875543322223345678999999998666655 889999998765443222


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~  581 (704)
                      ......+.+++++|+++++++...++.|.+|+..+.............+.+++++|+|+++++...++.|.+||......
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            23336789999999999777777788999998766554433223334678999999999777777788999999887654


Q ss_pred             eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277          582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT  661 (704)
Q Consensus       582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~  661 (704)
                      ......+...+..+.+                                  +++|.++++...++.|.+|+.......   
T Consensus       184 ~~~~~~~~~~p~~i~~----------------------------------d~~g~l~v~~~~~~~v~~~~~~~~~~~---  226 (270)
T 1rwi_B          184 VVLPFTDITAPWGIAV----------------------------------DEAGTVYVTEHNTNQVVKLLAGSTTST---  226 (270)
T ss_dssp             EECCCSSCCSEEEEEE----------------------------------CTTCCEEEEETTTSCEEEECTTCSCCE---
T ss_pred             EeecccCCCCceEEEE----------------------------------CCCCCEEEEECCCCcEEEEcCCCCcce---
Confidence            4333333345566666                                  889988888888899999998654321   


Q ss_pred             ccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          662 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       662 ~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                                  .....+...+.+++++++|.++++...++
T Consensus       227 ------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~  255 (270)
T 1rwi_B          227 ------------VLPFTGLNTPLAVAVDSDRTVYVADRGND  255 (270)
T ss_dssp             ------------ECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred             ------------eeccCCCCCceeEEECCCCCEEEEECCCC
Confidence                        01112235689999999999888776654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.56  E-value=2.1e-12  Score=133.69  Aligned_cols=246  Identities=9%  Similarity=0.068  Sum_probs=171.7

Q ss_pred             eeCCCCEEEEEEcCCCCEEEE-------EeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC
Q 005277          348 INTHNGLNCASISQDGSLVAG-------GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~las-------g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  420 (704)
                      ...-....+++|+++|.++++       +..++.|.+|+..+.......                        .....++
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~------------------------~~~~~~~   69 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC------------------------KPEVNGY   69 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE------------------------CCEETTE
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE------------------------ecccCCC
Confidence            344456789999999998888       677899999986542111000                        0001235


Q ss_pred             ccCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEE-eec----CCcCeeEEEEcCCCCEEEEEeCC----------
Q 005277          421 SGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNANLVC-YKG----HNYPVWDVQFNPQGHYFASSSHD----------  484 (704)
Q Consensus       421 ~~~V~~l~~sp~-~~~l~s~s~Dg~I~lwd~~~~~~~~~-~~~----h~~~V~~v~~sp~~~~l~sgs~d----------  484 (704)
                      ...+.+++++++ ++++++.. .+.|.+||.. ++.... ...    ....+.+++++++|+++++...+          
T Consensus        70 ~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~  147 (314)
T 1pjx_A           70 GGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS  147 (314)
T ss_dssp             ECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred             CCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence            567899999999 66554444 4479999998 654332 221    12358899999999887776655          


Q ss_pred             -----CeEEEEECCCCceeEEeccCCCCeeEEEEc----CCCCEEEEE-ECCCcEEEEeCC-CCc-----EEEEeecCC-
Q 005277          485 -----RTARIWSMDRIQPLRIMAGHLSDVDCVRWH----INCNYIATG-SSDKTVRLWDVS-SGE-----CVRIFIGHR-  547 (704)
Q Consensus       485 -----g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~----p~~~~l~tg-s~dg~I~iwd~~-~~~-----~~~~~~~h~-  547 (704)
                           +.|..|+.+ ++... +..+......++|+    |+++.++++ ..++.|.+||+. ++.     ....+.++. 
T Consensus       148 ~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~  225 (314)
T 1pjx_A          148 MQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             TSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             ccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence                 567777765 44333 33344557889999    999766655 467899999986 454     222333343 


Q ss_pred             CCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277          548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY  627 (704)
Q Consensus       548 ~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (704)
                      ..+..++++++|+++++...++.|.+||..+++.+..+..+...+.++.+                              
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~------------------------------  275 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF------------------------------  275 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE------------------------------
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEE------------------------------
Confidence            56889999999998888878899999999878777777666677788887                              


Q ss_pred             ecccCCCCCEE-EEEeCCCcEEEEeCCCC
Q 005277          628 FGCASCEGSLL-ASGSADCTVKLWDVTTS  655 (704)
Q Consensus       628 ~~~~s~~g~~l-asgs~Dg~V~iWd~~~~  655 (704)
                          +++++.| ++...++.|..|++...
T Consensus       276 ----~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          276 ----KPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             ----CTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             ----CCCCCEEEEEeCCCCeEEEEeCCCC
Confidence                8999955 55556789999998754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.56  E-value=5e-13  Score=136.57  Aligned_cols=191  Identities=11%  Similarity=0.083  Sum_probs=156.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeecCC-cCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC-CCCee
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH-LSDVD  509 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~-~~~V~  509 (704)
                      .++.|++++.|+.|.+||..+++.+..+..+. ..+.++.++|+|++++  +.++.|..||. +++.+..+..+ ...+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            36789999999999999999999999998776 5789999999999888  45788999999 78888888764 35788


Q ss_pred             EEEEcCCCCEEEEEEC-CCcEEEEeCCCCcEEEEeec------CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277          510 CVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFIG------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (704)
Q Consensus       510 ~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~------h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~  582 (704)
                      ++.+.|+|+++++.+. ++.|..+|. +|+.+..+..      +......+++.++|+++++...++.|.+||.. |+.+
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence            8999999999999887 788888885 7887777642      11234566789999999999999999999987 9988


Q ss_pred             eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccc
Q 005277          583 TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE  662 (704)
Q Consensus       583 ~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~  662 (704)
                      .++..+. ...++..                                  .++|+++++++.++.|..+|..+++.+.+..
T Consensus       159 w~~~~~~-~~~~~~~----------------------------------~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          159 NSVKLSG-TPFSSAF----------------------------------LDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EEEECSS-CCCEEEE----------------------------------CTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             EEEECCC-CccceeE----------------------------------cCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            8876542 2334444                                  7889999999988999999999888766553

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.55  E-value=3.7e-13  Score=157.45  Aligned_cols=238  Identities=15%  Similarity=0.058  Sum_probs=165.4

Q ss_pred             CEEEEEEcCCCCEEEEEeCC-----CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          353 GLNCASISQDGSLVAGGFSD-----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~d-----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      .+.+++|||||++||.+..+     ..|++||+.+...                            ... ..+...+.++
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~----------------------------~~~-~~~~~~~~~~  214 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP----------------------------LAD-ELKWVKFSGL  214 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE----------------------------EEE-EEEEEESCCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC----------------------------CCc-cCCCceeccE
Confidence            68899999999999988764     3599999876321                            110 1111223578


Q ss_pred             EEcCCCCEEEEEeCCCe--------------EEEEeCCCCce--eEEeec--CCcCeeEEEEcCCCCEEEEEeCCC----
Q 005277          428 SFSPLGDFILSSSADTT--------------IRLWSTKLNAN--LVCYKG--HNYPVWDVQFNPQGHYFASSSHDR----  485 (704)
Q Consensus       428 ~~sp~~~~l~s~s~Dg~--------------I~lwd~~~~~~--~~~~~~--h~~~V~~v~~sp~~~~l~sgs~dg----  485 (704)
                      +|+|| +.|+.++.++.              |++|++.++..  ...+..  +...+.++.|+|+|++++..+.++    
T Consensus       215 ~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  293 (741)
T 1yr2_A          215 AWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPV  293 (741)
T ss_dssp             EESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSC
T ss_pred             EEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCc
Confidence            99999 98888776654              89999987753  233333  333588999999999988877544    


Q ss_pred             -eEEEEECCCC--ceeEEeccCCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCC--cEEEEeecCCCCEEEEEEe
Q 005277          486 -TARIWSMDRI--QPLRIMAGHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSG--ECVRIFIGHRSMILSLAMS  556 (704)
Q Consensus       486 -~i~lwd~~~~--~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~--~~~~~~~~h~~~i~~l~~s  556 (704)
                       .|.+||++++  .+...+..+...+.... .|+|+.|+..+.+    +.|.+||+.++  .....+..+...+..++|+
T Consensus       294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~  372 (741)
T 1yr2_A          294 NTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA  372 (741)
T ss_dssp             CEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE
T ss_pred             ceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE
Confidence             8999999876  41445555555555553 4889988887764    45999999874  3444454555567778887


Q ss_pred             cCCCEEEEEeCCCeEEEEeCC-CCeeeeeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC
Q 005277          557 PDGRYMASGDEDGTIMMWDLA-SGRCVTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE  634 (704)
Q Consensus       557 pdg~~l~sg~~dg~I~iwdl~-~~~~~~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  634 (704)
                       ++.++++...||..+||.+. ++.....+.. +.+.+..+.+                                  +++
T Consensus       373 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~----------------------------------s~d  417 (741)
T 1yr2_A          373 -GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSG----------------------------------RPG  417 (741)
T ss_dssp             -BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEEC----------------------------------CBT
T ss_pred             -CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeec----------------------------------CCC
Confidence             66778888889987777554 4555555654 3567777777                                  888


Q ss_pred             CCEEE-EE---eCCCcEEEEeCCCCc
Q 005277          635 GSLLA-SG---SADCTVKLWDVTTST  656 (704)
Q Consensus       635 g~~la-sg---s~Dg~V~iWd~~~~~  656 (704)
                      +..|+ +.   ...++|++||+.+++
T Consensus       418 ~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          418 DRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             CSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            77555 22   245789999998765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.54  E-value=2.1e-11  Score=136.88  Aligned_cols=298  Identities=10%  Similarity=0.044  Sum_probs=195.3

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (704)
                      ..+.+.+.....+.  ........+.++.|||||+++.+++.|+.|.+||+....                         
T Consensus       177 ~~V~viD~~t~~v~--~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t-------------------------  229 (567)
T 1qks_A          177 GQIALIDGSTYEIK--TVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE-------------------------  229 (567)
T ss_dssp             TEEEEEETTTCCEE--EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS-------------------------
T ss_pred             CeEEEEECCCCeEE--EEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCC-------------------------
Confidence            34555444333222  223445567899999999999999999999999985100                         


Q ss_pred             CccceeeccCCccCeEEEEEc----CCCCEEEEEe-CCCeEEEEeCCCCceeEEeecC-----------CcCeeEEEEcC
Q 005277          410 RKRSYTLYQGHSGPVYSASFS----PLGDFILSSS-ADTTIRLWSTKLNANLVCYKGH-----------NYPVWDVQFNP  473 (704)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~s----p~~~~l~s~s-~Dg~I~lwd~~~~~~~~~~~~h-----------~~~V~~v~~sp  473 (704)
                       ......+.... ....++|+    |||+++++++ .+++|.++|..+.+.+..+...           ...+..+..++
T Consensus       230 -~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~  307 (567)
T 1qks_A          230 -PTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH  307 (567)
T ss_dssp             -CCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred             -CcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcC
Confidence             11112222222 35789999    6999888665 4599999999999888776521           12577888998


Q ss_pred             CCCEEE-EEeCCCeEEEEECCCCceeEEec-cCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeec-----
Q 005277          474 QGHYFA-SSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIG-----  545 (704)
Q Consensus       474 ~~~~l~-sgs~dg~i~lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~-----  545 (704)
                      ++..++ ....+|.|.++|......+.... .......++.|+|+++++++++ .++.|.++|+.+++.+..+..     
T Consensus       308 ~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P  387 (567)
T 1qks_A          308 YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP  387 (567)
T ss_dssp             SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred             CCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC
Confidence            766544 44567999999997754332211 2334567889999999988766 578999999999988776643     


Q ss_pred             CCCCEEEEEEecCCCEE-EEEe-CCCeEEEEeCCC-------CeeeeeecCCCceeeeeeeeeeehcccccccccccccc
Q 005277          546 HRSMILSLAMSPDGRYM-ASGD-EDGTIMMWDLAS-------GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVST  616 (704)
Q Consensus       546 h~~~i~~l~~spdg~~l-~sg~-~dg~I~iwdl~~-------~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~  616 (704)
                      |.+.-..+ ++|++..+ +++. .++.|.++|..+       .+.+.++......-..+..                   
T Consensus       388 hpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~-------------------  447 (567)
T 1qks_A          388 HPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKT-------------------  447 (567)
T ss_dssp             CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC-------------------
T ss_pred             CCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEe-------------------
Confidence            33222222 68875544 4443 568999999987       5566666544322122233                   


Q ss_pred             ceeeeeeeEEeecccCCCCCEEEEEeC-------CCcEEEEeCCCC-----ccccccccccCcccccccc---ccCCCCc
Q 005277          617 GFLFYSLTIIYFGCASCEGSLLASGSA-------DCTVKLWDVTTS-----TKVLKTEEKSGTNRLRSLK---TLPTKST  681 (704)
Q Consensus       617 ~~~~~~~~~~~~~~~s~~g~~lasgs~-------Dg~V~iWd~~~~-----~~~~~~~~~~~~~~~~~l~---~~~~~~~  681 (704)
                                     +|+++++.+...       .++|.|+|+.+.     ......         ..+.   .++....
T Consensus       448 ---------------~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~  503 (567)
T 1qks_A          448 ---------------HPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKT---------LPIAEWAGITEGQP  503 (567)
T ss_dssp             ---------------CTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEE---------ECHHHHHTCCSSCC
T ss_pred             ---------------CCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEE---------eccccccccCCCCc
Confidence                           999999888663       469999999875     110000         0011   1223345


Q ss_pred             CeEEEEEccCCcEEEEeec
Q 005277          682 PVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       682 ~V~~l~fs~~g~~La~gs~  700 (704)
                      .+..+.|+|+|..+.++..
T Consensus       504 ~~~~~~~~~~G~~~~~s~~  522 (567)
T 1qks_A          504 RVVQGEFNKDGTEVWFSVW  522 (567)
T ss_dssp             EEEEEEECTTSSEEEEEEE
T ss_pred             ceEeeeECCCCCEEEEEee
Confidence            6889999999988777643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.52  E-value=5.4e-12  Score=132.37  Aligned_cols=223  Identities=10%  Similarity=-0.018  Sum_probs=161.9

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      ....++.+. +++..++...++.|.+||..+++.+..+.. ......++++++++.+++...++.|.+||..+++....+
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            345677775 344555666689999999999999888863 456889999999855555548999999999998877666


Q ss_pred             ccCC-----CCeeEEEEcCCCCEEEEEE--CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC------
Q 005277          502 AGHL-----SDVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED------  568 (704)
Q Consensus       502 ~~~~-----~~V~~v~~~p~~~~l~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d------  568 (704)
                      ....     .....+++  ++..+++++  .++.|.+||..+++.+..+... .....++++|+|++++++..+      
T Consensus       122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~  198 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPY  198 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred             EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCcc
Confidence            5332     14567777  344555554  4889999999999988877643 345789999999977776654      


Q ss_pred             ----CeEEEEeCCCCeeeeeecCC-CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277          569 ----GTIMMWDLASGRCVTPLMGH-TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA  643 (704)
Q Consensus       569 ----g~I~iwdl~~~~~~~~~~~h-~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~  643 (704)
                          +.|.+||..+++....+... ......+++                                  +|+++.|+++..
T Consensus       199 ~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~----------------------------------~~d~~~lyv~~~  244 (328)
T 3dsm_A          199 GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL----------------------------------NGTRDTLYWINN  244 (328)
T ss_dssp             CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE----------------------------------CTTSCEEEEESS
T ss_pred             ccCCceEEEEECCCCeEEEEEecCCCCCceeEEE----------------------------------ecCCCEEEEEcc
Confidence                78999999999887766532 235677777                                  999998888765


Q ss_pred             CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc-CCcEEEEe
Q 005277          644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RNLLFAAG  698 (704)
Q Consensus       644 Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~-~g~~La~g  698 (704)
                        .|.+||..+++...             ...+.........++++| ++.++++.
T Consensus       245 --~v~~~d~~t~~~~~-------------~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          245 --DIWRMPVEADRVPV-------------RPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             --SEEEEETTCSSCCS-------------SCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             --EEEEEECCCCceee-------------eeeecCCCCceEEEEEcCCCCeEEEEc
Confidence              89999998765310             011112245688999999 56666665

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.52  E-value=9.7e-13  Score=153.90  Aligned_cols=226  Identities=12%  Similarity=0.026  Sum_probs=154.5

Q ss_pred             CccCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe--------
Q 005277          420 HSGPVYSASFSPLGDFILSSSAD-----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT--------  486 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~D-----g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~--------  486 (704)
                      |...+.+++|||||++|+.++.+     .+|++||+.+++.+.. ..+...+..++|+|+ +.|+.++.++.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44578899999999998866543     4699999999887543 212223468899999 99988876654        


Q ss_pred             ------EEEEECCCCce--eEEecc--CCCCeeEEEEcCCCCEEEEEECCC-----cEEEEeCCCC--cEEEEeecCCCC
Q 005277          487 ------ARIWSMDRIQP--LRIMAG--HLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSSG--ECVRIFIGHRSM  549 (704)
Q Consensus       487 ------i~lwd~~~~~~--~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg-----~I~iwd~~~~--~~~~~~~~h~~~  549 (704)
                            |++|++.++..  ...+..  +...+..+.|+|+|++|+..+.++     .|++||+.++  .+...+..+...
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                  88999977652  233333  233588999999999998877544     7999999877  414455555555


Q ss_pred             EEEEEEecCCCEEEEEeC----CCeEEEEeCCCC--eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeee
Q 005277          550 ILSLAMSPDGRYMASGDE----DGTIMMWDLASG--RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL  623 (704)
Q Consensus       550 i~~l~~spdg~~l~sg~~----dg~I~iwdl~~~--~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (704)
                      +... ++|+|+.|+..+.    ++.|.+||+.++  .....+..+...+.++.|                          
T Consensus       319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~--------------------------  371 (741)
T 1yr2_A          319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGI--------------------------  371 (741)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEE--------------------------
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEE--------------------------
Confidence            5555 3589998888775    356999999874  334444445555555655                          


Q ss_pred             eEEeecccCCCCCEEEEEeCCCcEEEEeCCC-CccccccccccCccccccccccCC-CCcCeEEEEEccCCcEEEEe
Q 005277          624 TIIYFGCASCEGSLLASGSADCTVKLWDVTT-STKVLKTEEKSGTNRLRSLKTLPT-KSTPVYSLQFSRRNLLFAAG  698 (704)
Q Consensus       624 ~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~-~~~~~~~~~~~~~~~~~~l~~~~~-~~~~V~~l~fs~~g~~La~g  698 (704)
                              + ++.++++...||..+||.+.. +..               +..+.. ....|..+.|+|++..|+..
T Consensus       372 --------~-~~~lv~~~~~dg~~~l~~~~~~g~~---------------~~~l~~~~~~~v~~~~~s~d~~~l~~~  424 (741)
T 1yr2_A          372 --------A-GNRLFASYIHDAKSQVLAFDLDGKP---------------AGAVSLPGIGSASGLSGRPGDRHAYLS  424 (741)
T ss_dssp             --------E-BTEEEEEEEETTEEEEEEEETTSCE---------------EEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred             --------E-CCEEEEEEEECCEEEEEEEeCCCCc---------------eeeccCCCCeEEEEeecCCCCCEEEEE
Confidence                    4 556788889999888886652 221               112221 24568889999988755543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.52  E-value=4.2e-12  Score=133.20  Aligned_cols=235  Identities=7%  Similarity=-0.070  Sum_probs=166.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (704)
                      ...+.+. ++++.++...++.|.+||..+..                            ....+. .......+++++++
T Consensus        46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~----------------------------~~~~i~-~~~~p~~i~~~~~g   95 (328)
T 3dsm_A           46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFK----------------------------EVGRIT-GFTSPRYIHFLSDE   95 (328)
T ss_dssp             EEEEEEE-TTEEEEEEGGGTEEEEEETTTCC----------------------------EEEEEE-CCSSEEEEEEEETT
T ss_pred             ceEEEEE-CCEEEEEEcCCCEEEEEECcccE----------------------------EEEEcC-CCCCCcEEEEeCCC
Confidence            4556663 45566666678999999987522                            212222 23567899999888


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeecCC-----cCeeEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeEEeccCCC
Q 005277          434 DFILSSSADTTIRLWSTKLNANLVCYKGHN-----YPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAGHLS  506 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~-----~~V~~v~~sp~~~~l~sgs--~dg~i~lwd~~~~~~~~~~~~~~~  506 (704)
                      +..++...++.|.+||..+++....+....     .....+++ .++ .+++++  .++.|.+||+.+++.+..+... .
T Consensus        96 ~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~  172 (328)
T 3dsm_A           96 KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDKVVDELTIG-I  172 (328)
T ss_dssp             EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTEEEEEEECS-S
T ss_pred             eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCeEEEEEEcC-C
Confidence            544444488999999999988777666433     14557777 344 444444  4899999999998887777643 3


Q ss_pred             CeeEEEEcCCCCEEEEEECC----------CcEEEEeCCCCcEEEEeecC-CCCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277          507 DVDCVRWHINCNYIATGSSD----------KTVRLWDVSSGECVRIFIGH-RSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (704)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~d----------g~I~iwd~~~~~~~~~~~~h-~~~i~~l~~spdg~~l~sg~~dg~I~iwd  575 (704)
                      ....+.++|+|++++++..+          +.|.+||..+++....+... ......++|+|+++.|+++..  .|.+||
T Consensus       173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d  250 (328)
T 3dsm_A          173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMP  250 (328)
T ss_dssp             CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEE
T ss_pred             CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEE
Confidence            45788999999877766554          78999999999887766532 346899999999999988765  899999


Q ss_pred             CCCCeeeee--ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC-CCCEEEEE----eCCCcEE
Q 005277          576 LASGRCVTP--LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC-EGSLLASG----SADCTVK  648 (704)
Q Consensus       576 l~~~~~~~~--~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~lasg----s~Dg~V~  648 (704)
                      ..+++....  +..+......+++                                  +| ++.++++.    ..++.|.
T Consensus       251 ~~t~~~~~~~~~~~~~~~p~gi~v----------------------------------dp~~g~lyva~~~~y~~~~~V~  296 (328)
T 3dsm_A          251 VEADRVPVRPFLEFRDTKYYGLTV----------------------------------NPNNGEVYVADAIDYQQQGIVY  296 (328)
T ss_dssp             TTCSSCCSSCSBCCCSSCEEEEEE----------------------------------CTTTCCEEEEECTTSSSEEEEE
T ss_pred             CCCCceeeeeeecCCCCceEEEEE----------------------------------cCCCCeEEEEcccccccCCEEE
Confidence            988875421  1212345566666                                  88 56666776    6789999


Q ss_pred             EEeCCCCccc
Q 005277          649 LWDVTTSTKV  658 (704)
Q Consensus       649 iWd~~~~~~~  658 (704)
                      +||.. ++.+
T Consensus       297 v~d~~-g~~~  305 (328)
T 3dsm_A          297 RYSPQ-GKLI  305 (328)
T ss_dssp             EECTT-CCEE
T ss_pred             EECCC-CCEE
Confidence            99998 6544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.51  E-value=2.3e-11  Score=136.67  Aligned_cols=266  Identities=11%  Similarity=0.089  Sum_probs=182.5

Q ss_pred             CCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEe
Q 005277          361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS  440 (704)
Q Consensus       361 ~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s  440 (704)
                      +.+.++++...++.|.+||..+..                            ....+. ....+.++.|+||++++++++
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~----------------------------v~~~i~-~g~~p~~v~~SpDGr~lyv~~  215 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYE----------------------------IKTVLD-TGYAVHISRLSASGRYLFVIG  215 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCC----------------------------EEEEEE-CSSCEEEEEECTTSCEEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCe----------------------------EEEEEe-CCCCccceEECCCCCEEEEEc
Confidence            445667777789999999987622                            222222 123466899999999999999


Q ss_pred             CCCeEEEEeCC--CCceeEEeecCCcCeeEEEEc----CCCCEEEEEe-CCCeEEEEECCCCceeEEeccC---------
Q 005277          441 ADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFN----PQGHYFASSS-HDRTARIWSMDRIQPLRIMAGH---------  504 (704)
Q Consensus       441 ~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~v~~s----p~~~~l~sgs-~dg~i~lwd~~~~~~~~~~~~~---------  504 (704)
                      .|+.|.+||+.  +.+.+..+.... ....++|+    |+|+++++++ .++++.++|..+.+++..+...         
T Consensus       216 ~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~  294 (567)
T 1qks_A          216 RDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY  294 (567)
T ss_dssp             TTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred             CCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc
Confidence            99999999996  777777777544 35789999    6999887776 5699999999999988776521         


Q ss_pred             --CCCeeEEEEcCCCCEEEE-EECCCcEEEEeCCCCcEEEEe-ecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCCC
Q 005277          505 --LSDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG  579 (704)
Q Consensus       505 --~~~V~~v~~~p~~~~l~t-gs~dg~I~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~  579 (704)
                        ...+..+..++++..+++ ....|.|.++|..+.+..... .........+.|+|+|++++++. .++.|.++|+.++
T Consensus       295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence              125778888887665544 456799999999876433221 13345678899999999887655 6789999999999


Q ss_pred             eeeeeecC-----CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC-CEEEEEe-CCCcEEEEeC
Q 005277          580 RCVTPLMG-----HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG-SLLASGS-ADCTVKLWDV  652 (704)
Q Consensus       580 ~~~~~~~~-----h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~lasgs-~Dg~V~iWd~  652 (704)
                      +.+..+..     |.+.  ...|                                 ++|++ .+++++. .+++|.++|.
T Consensus       375 kl~~~i~vgg~~Phpg~--g~~~---------------------------------~~p~~g~v~~t~~~g~~~Vsvid~  419 (567)
T 1qks_A          375 KLVAIEDTGGQTPHPGR--GANF---------------------------------VHPTFGPVWATSHMGDDSVALIGT  419 (567)
T ss_dssp             EEEEEEECSSSSBCCTT--CEEE---------------------------------EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             cEEEEEeccCcCCCCcc--ceee---------------------------------ECCCCCcEEEeCCCCCCeEEEecC
Confidence            87766543     2211  1111                                 06664 4445553 5689999999


Q ss_pred             CCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          653 TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                      .+....        ...++.+.++......-..+.++|+++.|.+..
T Consensus       420 ~~~~~~--------~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~  458 (567)
T 1qks_A          420 DPEGHP--------DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA  458 (567)
T ss_dssp             CTTTCT--------TTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred             CCCCCc--------cccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence            873211        111233444444333334567889888777654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.49  E-value=6.2e-11  Score=121.34  Aligned_cols=225  Identities=9%  Similarity=-0.008  Sum_probs=163.5

Q ss_pred             CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 005277          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~  498 (704)
                      +...+.++++.+++..+++...++.|.+||.. +..... ...+...+.++++.++|.++++...++.|..|+.+. + .
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-~   89 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-I-I   89 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-C-E
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-c-E
Confidence            44678999999999977777668899999988 543322 223456789999999999888777788999999863 3 2


Q ss_pred             EEec--cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277          499 RIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (704)
Q Consensus       499 ~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwd  575 (704)
                      ..+.  .....+.+++++|++.++++...++.|..||. +++..... ..+...+.+++++++|+.+++...++.|..||
T Consensus        90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  168 (299)
T 2z2n_A           90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT  168 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence            2232  24567899999999988887777889999998 66544332 23456789999999998888777788999999


Q ss_pred             CCCCeeeee-ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277          576 LASGRCVTP-LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT  654 (704)
Q Consensus       576 l~~~~~~~~-~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~  654 (704)
                      . +++.... ...+...+..+.+                                  +++|.++++...++.|.+||. +
T Consensus       169 ~-~g~~~~~~~~~~~~~~~~i~~----------------------------------~~~g~l~v~~~~~~~i~~~~~-~  212 (299)
T 2z2n_A          169 E-SGDITEFKIPTPASGPVGITK----------------------------------GNDDALWFVEIIGNKIGRITT-S  212 (299)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEE----------------------------------CTTSSEEEEETTTTEEEEECT-T
T ss_pred             C-CCcEEEeeCCCCCCcceeEEE----------------------------------CCCCCEEEEccCCceEEEECC-C
Confidence            8 6654432 2223344556666                                  888888777777889999998 5


Q ss_pred             CccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEe
Q 005277          655 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG  698 (704)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~g  698 (704)
                      +...              ....+.....+.++.++++|.++++.
T Consensus       213 g~~~--------------~~~~~~~~~~~~~i~~~~~g~l~v~~  242 (299)
T 2z2n_A          213 GEIT--------------EFKIPTPNARPHAITAGAGIDLWFTE  242 (299)
T ss_dssp             CCEE--------------EEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             CcEE--------------EEECCCCCCCceeEEECCCCCEEEec
Confidence            4321              01122344668899999999877664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.48  E-value=8.8e-13  Score=140.05  Aligned_cols=182  Identities=14%  Similarity=0.086  Sum_probs=140.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (704)
                      .++.+++++...++++|+.++ +.+|++..........   ..             . ... .....+.+ |+.++|  +
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~---~~-------------~-~~~-~~~~~lp~-V~~l~f--d   96 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD---ST-------------P-LTF-KWEKEIPD-VIFVCF--H   96 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS---SC-------------C-CCC-SEEEECTT-EEEEEE--E
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccc---cc-------------c-ccc-eEEeeCCC-eeEEEE--C
Confidence            578899999999999999885 4569987522100000   00             0 001 11223566 999999  8


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEE
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~  512 (704)
                      +.+|+++ .++.|++||+.+.........|..++.++.+.+..  +++++.||.+.+||+.++....    +...|.|++
T Consensus        97 ~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~  169 (388)
T 1xip_A           97 GDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFD  169 (388)
T ss_dssp             TTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEE
T ss_pred             CCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEE
Confidence            9999988 88999999999887777777888889988887653  8999999999999999876643    346899999


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCcE--EEEe------e---cCCCCEEEEEEecCCCEEEEE
Q 005277          513 WHINCNYIATGSSDKTVRLWDVSSGEC--VRIF------I---GHRSMILSLAMSPDGRYMASG  565 (704)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~--~~~~------~---~h~~~i~~l~~spdg~~l~sg  565 (704)
                      |+|+|  ++.|..||++++|+...+..  ...+      .   +|...|.+++|.+++.++++-
T Consensus       170 WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          170 VTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             ECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            99999  78899999999999887775  5555      2   477899999999999998873

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.48  E-value=1.8e-11  Score=132.38  Aligned_cols=248  Identities=10%  Similarity=0.115  Sum_probs=161.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (704)
                      ....++|+++++++++...++.|++||..+..                            .......... .. ++|+|+
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~----------------------------~~~~~~~~~~-~~-ia~~~~  181 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK----------------------------VTTVHPGFKG-GK-PAVTKD  181 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTE----------------------------EEEEEETCCB-CB-CEECTT
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCE----------------------------EEEeeccCCC-Cc-eeEecC
Confidence            57889999999988888888999999986421                            1111112222 23 899999


Q ss_pred             CCEEEEEeCCC--eEEEEeCCCCceeEEe----ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE----ec
Q 005277          433 GDFILSSSADT--TIRLWSTKLNANLVCY----KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI----MA  502 (704)
Q Consensus       433 ~~~l~s~s~Dg--~I~lwd~~~~~~~~~~----~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~----~~  502 (704)
                      ++.|+++..++  .|.+|+...+.....+    ......+++++++|++..|+++..++.|+.||.+++.....    ..
T Consensus       182 g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~  261 (409)
T 3hrp_A          182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS  261 (409)
T ss_dssp             SSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred             CCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence            99999888766  7999988766554333    22445678999999555555577789999999987653332    22


Q ss_pred             cCCCCe--eEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecCC---------------CCEEEEEEecCCCEEEE
Q 005277          503 GHLSDV--DCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHR---------------SMILSLAMSPDGRYMAS  564 (704)
Q Consensus       503 ~~~~~V--~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~---------------~~i~~l~~spdg~~l~s  564 (704)
                      ++...-  ..++|+|+ +.++++...++.|+.|+....  +..+.++.               .....++++|+|+++++
T Consensus       262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva  339 (409)
T 3hrp_A          262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV  339 (409)
T ss_dssp             SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred             CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence            222222  39999995 555555667889999997543  33343432               35789999999997777


Q ss_pred             Ee-CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277          565 GD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA  643 (704)
Q Consensus       565 g~-~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~  643 (704)
                      -. .++.|+.||+.++.. ..+.++... .  .+      .++ .      .....+   ..+.-.+++++|.++++-..
T Consensus       340 d~~~~~~I~~~~~~~G~v-~~~~g~~~~-~--g~------~~g-~------~~~~~~---~~P~giavd~~g~lyVad~~  399 (409)
T 3hrp_A          340 DGFKGYCLRKLDILDGYV-STVAGQVDV-A--SQ------IDG-T------PLEATF---NYPYDICYDGEGGYWIAEAW  399 (409)
T ss_dssp             ETTTTCEEEEEETTTTEE-EEEEECTTC-B--SC------CCB-S------TTTCCB---SSEEEEEECSSSEEEEEEST
T ss_pred             eCCCCCEEEEEECCCCEE-EEEeCCCCC-C--Cc------CCC-C------hhceEe---CCceEEEEcCCCCEEEEECC
Confidence            77 889999999877764 333333110 0  00      000 0      000000   01111222888888888888


Q ss_pred             CCcEEEEeC
Q 005277          644 DCTVKLWDV  652 (704)
Q Consensus       644 Dg~V~iWd~  652 (704)
                      ++.|+.+++
T Consensus       400 n~~Ir~i~~  408 (409)
T 3hrp_A          400 GKAIRKYAV  408 (409)
T ss_dssp             TCEEEEEEE
T ss_pred             CCeEEEEEe
Confidence            888888765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.45  E-value=3.7e-11  Score=124.31  Aligned_cols=227  Identities=10%  Similarity=0.088  Sum_probs=155.2

Q ss_pred             ccCeEEEEEcCCCCEEEE-------EeCCCeEEEEeCCCCceeEEee----cCCcCeeEEEEcCC-CCEEEEEeCCCeEE
Q 005277          421 SGPVYSASFSPLGDFILS-------SSADTTIRLWSTKLNANLVCYK----GHNYPVWDVQFNPQ-GHYFASSSHDRTAR  488 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s-------~s~Dg~I~lwd~~~~~~~~~~~----~h~~~V~~v~~sp~-~~~l~sgs~dg~i~  488 (704)
                      -....+++|++++.++++       ++.++.|.+||..+++......    ++...+.+++++++ |++++ ++..+.|.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~   95 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLL   95 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCEE
Confidence            345689999999987777       5778899999988776543221    24467899999999 66444 44455799


Q ss_pred             EEECCCCceeEE-ecc----CCCCeeEEEEcCCCCEEEEEECC---------------CcEEEEeCCCCcEEEEeecCCC
Q 005277          489 IWSMDRIQPLRI-MAG----HLSDVDCVRWHINCNYIATGSSD---------------KTVRLWDVSSGECVRIFIGHRS  548 (704)
Q Consensus       489 lwd~~~~~~~~~-~~~----~~~~V~~v~~~p~~~~l~tgs~d---------------g~I~iwd~~~~~~~~~~~~h~~  548 (704)
                      +||.+ ++.... ...    ....+.+++++|+|+++++...+               +.|..||.. ++..... .+..
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~  172 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQ  172 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEES
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCC
Confidence            99998 554333 221    12357899999999887776554               567778765 5544333 3344


Q ss_pred             CEEEEEEe----cCCCEEEEE-eCCCeEEEEeCC-CCe-----eeeeecCCC-ceeeeeeeeeeehcccccccccccccc
Q 005277          549 MILSLAMS----PDGRYMASG-DEDGTIMMWDLA-SGR-----CVTPLMGHT-SCVWTLAYRFLLLVTNAYLKISDKVST  616 (704)
Q Consensus       549 ~i~~l~~s----pdg~~l~sg-~~dg~I~iwdl~-~~~-----~~~~~~~h~-~~V~sl~~~~~~~~~~~~~~~~~~~~~  616 (704)
                      ....++|+    |+|+.|+.+ ..++.|.+||+. +++     ....+..+. .....+.+                   
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~-------------------  233 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF-------------------  233 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE-------------------
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE-------------------
Confidence            57899999    999766555 567899999986 443     222233333 44555555                   


Q ss_pred             ceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEE
Q 005277          617 GFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA  696 (704)
Q Consensus       617 ~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La  696 (704)
                                     +++|+++++...++.|.+||..++...               ..+..+...+.+++|+++|..|.
T Consensus       234 ---------------d~~G~l~v~~~~~~~i~~~d~~~g~~~---------------~~~~~~~~~~~~i~~~~dg~~l~  283 (314)
T 1pjx_A          234 ---------------DEDNNLLVANWGSSHIEVFGPDGGQPK---------------MRIRCPFEKPSNLHFKPQTKTIF  283 (314)
T ss_dssp             ---------------BTTCCEEEEEETTTEEEEECTTCBSCS---------------EEEECSSSCEEEEEECTTSSEEE
T ss_pred             ---------------CCCCCEEEEEcCCCEEEEEcCCCCcEe---------------EEEeCCCCCceeEEECCCCCEEE
Confidence                           889998888888899999998754321               22223346789999999998555


Q ss_pred             Eeec
Q 005277          697 AGAL  700 (704)
Q Consensus       697 ~gs~  700 (704)
                      +++.
T Consensus       284 v~~~  287 (314)
T 1pjx_A          284 VTEH  287 (314)
T ss_dssp             EEET
T ss_pred             EEeC
Confidence            5443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.43  E-value=4e-10  Score=115.27  Aligned_cols=216  Identities=6%  Similarity=-0.043  Sum_probs=150.8

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      ....+.+++++++|.+.++...++.|..|+... ...                           ..........+.++++
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g-~~~---------------------------~~~~~~~~~~~~~i~~  111 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKKG-GFT---------------------------EYPLPQPDSGPYGITE  111 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE---------------------------EEECSSTTCCEEEEEE
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCCC-CeE---------------------------EecCCCCCCCCccceE
Confidence            346789999999999888777788899998652 110                           0111112356889999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEE-eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE-eccCCCC
Q 005277          430 SPLGDFILSSSADTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLSD  507 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~-~~~~~~~  507 (704)
                      .+++.++++...++.|..|+.. ++.... +......+.++++.++|+.+++...++.|..|+. +++.... ...+...
T Consensus       112 ~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~  189 (300)
T 2qc5_A          112 GLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAA  189 (300)
T ss_dssp             CSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred             CCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCC
Confidence            9999988777778899999987 544322 2334557889999999997766666789999998 4444332 2234457


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE-eecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee-e
Q 005277          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP-L  585 (704)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~-~  585 (704)
                      +.++++++++++.++....+.|.+||. ++..... ...+...+.+++++++|+..++...++.|..||. +++.... +
T Consensus       190 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~  267 (300)
T 2qc5_A          190 PVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQL  267 (300)
T ss_dssp             EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEEC
T ss_pred             cceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEEC
Confidence            889999999987777666778999998 5554443 2334567899999999997777667789999998 4443321 2


Q ss_pred             cCCCceeeeeee
Q 005277          586 MGHTSCVWTLAY  597 (704)
Q Consensus       586 ~~h~~~V~sl~~  597 (704)
                      ......+.++..
T Consensus       268 ~~~~~~~~~i~~  279 (300)
T 2qc5_A          268 QTENAEPHGITF  279 (300)
T ss_dssp             CSTTCCCCCEEE
T ss_pred             CccCCccceeEe
Confidence            223344556655

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.43  E-value=5e-11  Score=123.02  Aligned_cols=213  Identities=13%  Similarity=0.182  Sum_probs=149.7

Q ss_pred             CEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          353 GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       353 ~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      ---+..|+++ +.++++...++.|..|+..+...                             ..+ .+...+.++++++
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------------------------~~~-~~~~~~~~i~~~~   63 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----------------------------QRV-TMDAPVSSVALRQ   63 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------------------------EEE-ECSSCEEEEEEBT
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----------------------------EEE-eCCCceEEEEECC
Confidence            4568899995 66777777889999999765210                             111 1345789999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeec----CCcCeeEEEEcCCCCEEEEEeC---------CCeEEEEECCCCcee
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNPQGHYFASSSH---------DRTARIWSMDRIQPL  498 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~v~~sp~~~~l~sgs~---------dg~i~lwd~~~~~~~  498 (704)
                      +++++++ . ++.|.+||..+++.......    ....+.+++++|+|+++++...         .....+|.++.....
T Consensus        64 dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~  141 (297)
T 3g4e_A           64 SGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV  141 (297)
T ss_dssp             TSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE
T ss_pred             CCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE
Confidence            9995554 4 56799999987765433322    1245789999999996665432         133455655433233


Q ss_pred             EEeccCCCCeeEEEEcCCCCEEEE-EECCCcEEEEeC--CCCcEE-----EEeecCCCCEEEEEEecCCCEEEEEeCCCe
Q 005277          499 RIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLWDV--SSGECV-----RIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (704)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~t-gs~dg~I~iwd~--~~~~~~-----~~~~~h~~~i~~l~~spdg~~l~sg~~dg~  570 (704)
                      ..+..+......++|+|+++.|+. .+.++.|.+||+  .+|...     ..+..+.+.+..++++++|++.++...++.
T Consensus       142 ~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~  221 (297)
T 3g4e_A          142 KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR  221 (297)
T ss_dssp             EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE
T ss_pred             EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE
Confidence            333334456788999999987755 455788999987  455432     222334467889999999998888878889


Q ss_pred             EEEEeCCCCeeeeeecCCCceeeeeee
Q 005277          571 IMMWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       571 I~iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      |.+||..+++.+..+..+...+++++|
T Consensus       222 v~~~d~~tG~~~~~i~~p~~~~t~~~f  248 (297)
T 3g4e_A          222 VIRLDPVTGKRLQTVKLPVDKTTSCCF  248 (297)
T ss_dssp             EEEECTTTCCEEEEEECSSSBEEEEEE
T ss_pred             EEEEcCCCceEEEEEECCCCCceEEEE
Confidence            999999999999888877778889988

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.42  E-value=3e-12  Score=135.90  Aligned_cols=161  Identities=11%  Similarity=0.025  Sum_probs=130.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNA-----------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-----------~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd  491 (704)
                      +++.+++++...++++|+.++ +++|++....           ..... .+.. |+.++|  ++.+++++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            689999999999999999985 6669865332           11222 3566 999999  99999999 889999999


Q ss_pred             CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277          492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (704)
Q Consensus       492 ~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I  571 (704)
                      +++.........|...+.++.+.+.  .+++++.||.|.+||+.++....    +...|+|++|||+|  ++.|..||.+
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i  184 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF  184 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence            9887766666677788888877654  38889999999999999887654    34589999999999  7789999999


Q ss_pred             EEEeCCCCee--eeee------c---CCCceeeeeee
Q 005277          572 MMWDLASGRC--VTPL------M---GHTSCVWTLAY  597 (704)
Q Consensus       572 ~iwdl~~~~~--~~~~------~---~h~~~V~sl~~  597 (704)
                      ++|+...+..  ..++      .   +|...|.++.|
T Consensus       185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~w  221 (388)
T 1xip_A          185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTI  221 (388)
T ss_dssp             EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEE
T ss_pred             EEEcCCCccccccceecCCcccccccCCCeeEEEEEE
Confidence            9999887775  5555      2   47889999999

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.40  E-value=3.2e-11  Score=139.84  Aligned_cols=236  Identities=13%  Similarity=0.112  Sum_probs=158.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEe-----CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC--
Q 005277          351 HNGLNCASISQDGSLVAGGF-----SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP--  423 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~-----~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--  423 (704)
                      ...+..++|||||++||.+.     ....|++||+.+...                            ...   +...  
T Consensus       128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~----------------------------~~~---~~~~~k  176 (693)
T 3iuj_A          128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP----------------------------LET---PLKDVK  176 (693)
T ss_dssp             CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE----------------------------EEE---EEEEEE
T ss_pred             cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC----------------------------Ccc---ccCCce
Confidence            34688899999999999643     335699999886321                            110   1112  


Q ss_pred             eEEEEEcCCCCEEEEEeCCCe-------------EEEEeCCCCce--eEEee--c-CCcCeeEEEEcCCCCEEEEEeC--
Q 005277          424 VYSASFSPLGDFILSSSADTT-------------IRLWSTKLNAN--LVCYK--G-HNYPVWDVQFNPQGHYFASSSH--  483 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~-------------I~lwd~~~~~~--~~~~~--~-h~~~V~~v~~sp~~~~l~sgs~--  483 (704)
                      ..+++|+ |++.|+.++.+..             |++|++.+...  ...+.  . |...+.++.|+|+|++++....  
T Consensus       177 ~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~  255 (693)
T 3iuj_A          177 FSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS  255 (693)
T ss_dssp             SCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred             eccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC
Confidence            3567899 9999998887743             99999987653  33333  2 3445788999999998765442  


Q ss_pred             --CCeEEEEECCCCc-eeEEeccCCCCeeEEEEcCCCCEEEEEE-CC---CcEEEEeCCCCcE--EEEeecCCCCEEEEE
Q 005277          484 --DRTARIWSMDRIQ-PLRIMAGHLSDVDCVRWHINCNYIATGS-SD---KTVRLWDVSSGEC--VRIFIGHRSMILSLA  554 (704)
Q Consensus       484 --dg~i~lwd~~~~~-~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~d---g~I~iwd~~~~~~--~~~~~~h~~~i~~l~  554 (704)
                        ++.+.+||++++. ....+..+....... |++++..|+..+ .+   +.|..+|+.++..  .+.+..|...+.  .
T Consensus       256 ~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~  332 (693)
T 3iuj_A          256 TSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--T  332 (693)
T ss_dssp             SSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--E
T ss_pred             CCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--E
Confidence              3589999998763 445555565555554 566666665544 33   6799999987754  345666766665  8


Q ss_pred             EecCCCEEEEEeCCC---eEEEEeCCCCeeeeeec-CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277          555 MSPDGRYMASGDEDG---TIMMWDLASGRCVTPLM-GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC  630 (704)
Q Consensus       555 ~spdg~~l~sg~~dg---~I~iwdl~~~~~~~~~~-~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (704)
                      |++++++|+....++   .|++||+..+. ...+. ...+.+..+.+                                 
T Consensus       333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~---------------------------------  378 (693)
T 3iuj_A          333 VHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNG---------------------------------  378 (693)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCC---------------------------------
T ss_pred             EEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeec---------------------------------
Confidence            999999887765443   68999987543 34443 33455666665                                 


Q ss_pred             cCCCCCEEEEEeCC----CcEEEEeCCCCc
Q 005277          631 ASCEGSLLASGSAD----CTVKLWDVTTST  656 (704)
Q Consensus       631 ~s~~g~~lasgs~D----g~V~iWd~~~~~  656 (704)
                       ++++..++....+    ++|..||+.++.
T Consensus       379 -~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          379 -KHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             -CTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             -CCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence             7777766555444    789999987765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.39  E-value=2.4e-10  Score=117.90  Aligned_cols=226  Identities=12%  Similarity=0.105  Sum_probs=149.5

Q ss_pred             CccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 005277          420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (704)
Q Consensus       420 h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~  498 (704)
                      +..-..+..|+|++. ++++...++.|..||..++.. ..+. ....+.+++++++|+++++ . ++.|.+||.++++..
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence            334456889999655 555667789999999987654 3333 4567999999999995544 4 578999999877644


Q ss_pred             EEecc----CCCCeeEEEEcCCCCEEEEEECC---------CcEEEEeCCC-CcEEEEeecCCCCEEEEEEecCCCEEE-
Q 005277          499 RIMAG----HLSDVDCVRWHINCNYIATGSSD---------KTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMA-  563 (704)
Q Consensus       499 ~~~~~----~~~~V~~v~~~p~~~~l~tgs~d---------g~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~~l~-  563 (704)
                      .....    ....+..++++|+|+++++....         ....+|.+.. ++... +..+......++|+|+|+.|+ 
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv  165 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYY  165 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEE
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEE
Confidence            33322    12347889999999966654321         2334554432 44333 333445578999999998765 


Q ss_pred             EEeCCCeEEEEeC--CCCeee-----eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC
Q 005277          564 SGDEDGTIMMWDL--ASGRCV-----TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS  636 (704)
Q Consensus       564 sg~~dg~I~iwdl--~~~~~~-----~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  636 (704)
                      +.+.++.|.+||+  .++...     ..+..+.+....+.+                                  +++|+
T Consensus       166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~----------------------------------d~~G~  211 (297)
T 3g4e_A          166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI----------------------------------DAEGK  211 (297)
T ss_dssp             EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE----------------------------------BTTSC
T ss_pred             ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE----------------------------------CCCCC
Confidence            4556789999987  455421     122222234444554                                  88998


Q ss_pred             EEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEc-cCCcEEEEee
Q 005277          637 LLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS-RRNLLFAAGA  699 (704)
Q Consensus       637 ~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs-~~g~~La~gs  699 (704)
                      +.++...++.|.+||..+++.               +..+......+++++|. |++..|.+++
T Consensus       212 lwva~~~~~~v~~~d~~tG~~---------------~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          212 LWVACYNGGRVIRLDPVTGKR---------------LQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EEEEEETTTEEEEECTTTCCE---------------EEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             EEEEEcCCCEEEEEcCCCceE---------------EEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            888888888999999987653               23333344578999998 8876554444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.39  E-value=1.1e-10  Score=126.20  Aligned_cols=256  Identities=11%  Similarity=0.039  Sum_probs=158.8

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeE
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLR  499 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg--~i~lwd~~~~~~~~  499 (704)
                      ....+++|+++++++++...++.|++||..++........... .. ++|+|++..++++..++  .|.+|+........
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            3578999999999777777889999999997766655554333 33 99999999998888766  78888887655444


Q ss_pred             Ee----ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE----eecCCCCE--EEEEEecC-CCEEEEEeCC
Q 005277          500 IM----AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI----FIGHRSMI--LSLAMSPD-GRYMASGDED  568 (704)
Q Consensus       500 ~~----~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~----~~~h~~~i--~~l~~spd-g~~l~sg~~d  568 (704)
                      .+    ......+.+++++|++..|+++..++.|+.||..++.....    ..++...-  ..++|+|+ +.++++-..+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            44    22456788999999655666677788999999987764332    22222222  39999995 6666666778


Q ss_pred             CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCcE
Q 005277          569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCTV  647 (704)
Q Consensus       569 g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~V  647 (704)
                      +.|+.||....  +..+.++....   .+.      ++ ..      ....+   ..+.-.+++++|+++++-+ .++.|
T Consensus       289 ~~I~~~~~~g~--~~~~~g~~~~~---g~~------dg-~~------~~~~~---~~P~gia~d~dG~lyvad~~~~~~I  347 (409)
T 3hrp_A          289 SSVYKITPDGE--CEWFCGSATQK---TVQ------DG-LR------EEALF---AQPNGMTVDEDGNFYIVDGFKGYCL  347 (409)
T ss_dssp             TEEEEECTTCC--EEEEEECTTCC---SCB------CE-EG------GGCBC---SSEEEEEECTTCCEEEEETTTTCEE
T ss_pred             CEEEEEecCCC--EEEEEeCCCCC---CcC------CC-cc------cccEe---CCCeEEEEeCCCCEEEEeCCCCCEE
Confidence            89999997643  22332221000   000      00 00      00000   0011223389999888888 89999


Q ss_pred             EEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          648 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       648 ~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                      +.|++.++.... ............-......-.....++++++|.++++-..+
T Consensus       348 ~~~~~~~G~v~~-~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n  400 (409)
T 3hrp_A          348 RKLDILDGYVST-VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG  400 (409)
T ss_dssp             EEEETTTTEEEE-EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT
T ss_pred             EEEECCCCEEEE-EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC
Confidence            999987664321 11110000000000001112457899999999888776544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.37  E-value=1.2e-10  Score=120.69  Aligned_cols=231  Identities=8%  Similarity=0.049  Sum_probs=157.9

Q ss_pred             EeeCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          347 FINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      +...........|+|+|+ +++++..++.|..|+...                              ....+..+...+.
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g------------------------------~~~~~~~~~~~~~   89 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG------------------------------TVDVLLDATAFTN   89 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS------------------------------CEEEEEESCSCEE
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC------------------------------CEEEEeCCCCccc
Confidence            344455678899999998 777788889999998632                              0122223456789


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC----CcCeeEEEEcCCCCEEEE----EeC-------------C
Q 005277          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGHYFAS----SSH-------------D  484 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h----~~~V~~v~~sp~~~~l~s----gs~-------------d  484 (704)
                      +++++++|+++++...++.|.+|+.. ++........    ...+.++++.|+|+++++    |..             .
T Consensus        90 gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~  168 (305)
T 3dr2_A           90 GNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH  168 (305)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred             eeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence            99999999976666666889999986 5432221111    134678999999998876    332             2


Q ss_pred             CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECC------CcEEEEeCCCCcE--EEEe-ecCCCCEEEEEE
Q 005277          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD------KTVRLWDVSSGEC--VRIF-IGHRSMILSLAM  555 (704)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d------g~I~iwd~~~~~~--~~~~-~~h~~~i~~l~~  555 (704)
                      +.|..||..+++.....  .......++|+|+++.|+++...      +.|++||+..+..  ...+ ....+....+++
T Consensus       169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~  246 (305)
T 3dr2_A          169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCV  246 (305)
T ss_dssp             EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEE
T ss_pred             CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEE
Confidence            56777777666554433  44567889999999988887665      7899999876541  1122 112344567899


Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC
Q 005277          556 SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG  635 (704)
Q Consensus       556 spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  635 (704)
                      +++|++. +++.+ .|.+||. .++.+..+..+. .+.++.|                                  ++++
T Consensus       247 d~~G~lw-v~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f----------------------------------~~d~  288 (305)
T 3dr2_A          247 DRGGWLW-SSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTF----------------------------------DQAQ  288 (305)
T ss_dssp             CTTSCEE-ECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEE----------------------------------CTTS
T ss_pred             CCCCCEE-EecCC-cEEEECC-CCCEEEEEECCC-ceeEEEE----------------------------------eCCC
Confidence            9999944 44444 4999997 577777666554 4677777                                  8888


Q ss_pred             CEEEEEeCCCcEE
Q 005277          636 SLLASGSADCTVK  648 (704)
Q Consensus       636 ~~lasgs~Dg~V~  648 (704)
                      +.|+.++.++..+
T Consensus       289 ~~L~it~~~~l~~  301 (305)
T 3dr2_A          289 QRLFITGGPCLWM  301 (305)
T ss_dssp             CEEEEEETTEEEE
T ss_pred             CEEEEEcCCeEEE
Confidence            8888887764333

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.37  E-value=3.1e-10  Score=118.75  Aligned_cols=209  Identities=9%  Similarity=-0.026  Sum_probs=144.1

Q ss_pred             CEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          353 GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       353 ~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      -..+..|+|+ +.+++++..++.|.+|+..+..                             ...+. +...+.+++|+|
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~-----------------------------~~~~~-~~~~v~~i~~~~   99 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGR-----------------------------KTVHA-LPFMGSALAKIS   99 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-----------------------------EEEEE-CSSCEEEEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc-----------------------------EEEEE-CCCcceEEEEeC
Confidence            3567899997 5667777778999999976411                             11111 235789999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeec----CCcCeeEEEEcCCCCEEEEEeC------CCeEEEEECCCCceeEEe
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~v~~sp~~~~l~sgs~------dg~i~lwd~~~~~~~~~~  501 (704)
                      ++++++++ .+ .|.+||..+++.......    ....+.++.++|+|+++++...      .+.|..++  +++. ..+
T Consensus       100 dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~  174 (326)
T 2ghs_A          100 DSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKL  174 (326)
T ss_dssp             TTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEE
T ss_pred             CCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEe
Confidence            99877654 44 499999987765432221    1235889999999987665432      24555555  4433 333


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCC--CC-c-----EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277          502 AGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS--SG-E-----CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~--~~-~-----~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~  572 (704)
                      ..+......++|+|+++.++.+. .++.|.+||+.  +| .     .+..+......+..++++++|++.++...++.|.
T Consensus       175 ~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~  254 (326)
T 2ghs_A          175 FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVD  254 (326)
T ss_dssp             EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEE
Confidence            33344577899999998776554 56899999986  56 3     1222333445678999999998877777778999


Q ss_pred             EEeCCCCeeeeeecCCCceeeeeee
Q 005277          573 MWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       573 iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      +||. +++.+..+..+...+++++|
T Consensus       255 ~~d~-~g~~~~~i~~~~~~~~~~af  278 (326)
T 2ghs_A          255 RYDT-DGNHIARYEVPGKQTTCPAF  278 (326)
T ss_dssp             EECT-TCCEEEEEECSCSBEEEEEE
T ss_pred             EECC-CCCEEEEEECCCCCcEEEEE
Confidence            9998 67777777766667888888

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.36  E-value=6.7e-11  Score=124.79  Aligned_cols=265  Identities=11%  Similarity=0.030  Sum_probs=170.8

Q ss_pred             CCEEEEEEcCCCCEEEEEe--CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          352 NGLNCASISQDGSLVAGGF--SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~--~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      ..+..++++++|+++++..  .++.++||.+.. +...  . ....              .    ....+|-..+.++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~--~-~p~~--------------~----~~~~~~~~~p~gv~~   74 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLI--P-FPPQ--------------S----GNAIITFDTVLGIKS   74 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEE--E-SCCC--------------C----SSCCCCCSCEEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCee--c-CCCc--------------c----cCcccceeEeeEEEE
Confidence            6789999999999988864  245467777652 1110  0 0000              0    012246678999999


Q ss_pred             cCCCCEEEEEeC-----CCeEEEEeCCCCceeEEeecC------CcCeeEEEEcCCC-CEEEEEe---CCCeEEEEECCC
Q 005277          430 SPLGDFILSSSA-----DTTIRLWSTKLNANLVCYKGH------NYPVWDVQFNPQG-HYFASSS---HDRTARIWSMDR  494 (704)
Q Consensus       430 sp~~~~l~s~s~-----Dg~I~lwd~~~~~~~~~~~~h------~~~V~~v~~sp~~-~~l~sgs---~dg~i~lwd~~~  494 (704)
                      +++++++++-+.     ++.|.+||+.+++.+..+...      ...+.++++++++ ..+++..   .++.|.+||+.+
T Consensus        75 d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~  154 (343)
T 2qe8_A           75 DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT  154 (343)
T ss_dssp             CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred             cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence            999886665443     578999999988877666532      2356899999864 4445554   678999999998


Q ss_pred             CceeEEeccCCCCee-EEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC-eEE
Q 005277          495 IQPLRIMAGHLSDVD-CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG-TIM  572 (704)
Q Consensus       495 ~~~~~~~~~~~~~V~-~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg-~I~  572 (704)
                      ++..+.+.+|..... ...+.++|..+.+.+.++.+..|.              ..+..|+|+|+|+.|+++..++ .|.
T Consensus       155 g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~  220 (343)
T 2qe8_A          155 GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMY  220 (343)
T ss_dssp             CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEE
T ss_pred             CCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEE
Confidence            887777765432111 144556777777778888876663              2367899999999998887766 444


Q ss_pred             EEeCC---CCee-----ee--eecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe
Q 005277          573 MWDLA---SGRC-----VT--PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS  642 (704)
Q Consensus       573 iwdl~---~~~~-----~~--~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs  642 (704)
                      .++..   .+..     ..  ...++.+....+++                                  +++|.++++..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~----------------------------------d~~G~l~va~~  266 (343)
T 2qe8_A          221 RIKSADLSNLQLTDAELGSKIERYSEKPICDGISI----------------------------------DKDHNIYVGDL  266 (343)
T ss_dssp             EEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE----------------------------------CTTCCEEEEEG
T ss_pred             EEEHHHhcCCCCChhhhhcceEecccCCCCceEEE----------------------------------CCCCCEEEEcc
Confidence            44421   1100     00  00111222233444                                  88999999999


Q ss_pred             CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277          643 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       643 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~  700 (704)
                      .++.|.+||..++..             ..+...+ ....+.+++|+++|.++++.+.
T Consensus       267 ~~~~V~~~d~~~G~~-------------~~~~~~~-~~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          267 AHSAIGVITSADRAY-------------KLLVTDE-KLSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             GGTEEEEEETTTTEE-------------EEEEECG-GGSCEEEEEECTTSCEEEEECC
T ss_pred             CCCeEEEEECCCCCE-------------EEEEECC-ceecCCeeEECCCCcEEEEeCc
Confidence            999999999844431             1111111 2345789999999988887663

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.34  E-value=2.5e-09  Score=113.94  Aligned_cols=228  Identities=7%  Similarity=-0.058  Sum_probs=146.4

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeecC-------CcCeeEEEEcCCCCEEEEEeC--CCe
Q 005277          426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT  486 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~v~~sp~~~~l~sgs~--dg~  486 (704)
                      .++++||+++++.+.          .+++|.+||..+.+.+..+...       ......+.|+|+|+++++++.  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999998875          3678999999988877766432       123458999999999998874  588


Q ss_pred             EEEEECCCCceeEE-eccCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEEEEee-----cCCCC-EEEEEEecC
Q 005277          487 ARIWSMDRIQPLRI-MAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFI-----GHRSM-ILSLAMSPD  558 (704)
Q Consensus       487 i~lwd~~~~~~~~~-~~~~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~-----~h~~~-i~~l~~spd  558 (704)
                      |.++| .+++.+.. +...    .|+.+.|++ ..+++.+.||.+.+||. +++.+....     ....+ .....+.++
T Consensus       150 v~viD-~t~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~  223 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence            99999 99888766 5422    134555655 45566778999999999 887763321     11122 233566777


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCe--eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC
Q 005277          559 GRYMASGDEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS  636 (704)
Q Consensus       559 g~~l~sg~~dg~I~iwdl~~~~--~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  636 (704)
                      +..++..+..+.+.+.|+.++.  .+..+...........|.+                        .......++++++
T Consensus       224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p------------------------~g~~~~~~s~d~~  279 (373)
T 2mad_H          224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRP------------------------GGWQQVAYLKSSD  279 (373)
T ss_pred             CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceec------------------------CceEeEEECCCCC
Confidence            6655555578899999987552  2222211111000111100                        0000011288888


Q ss_pred             EEEEEeC----------CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCc-EEEEee
Q 005277          637 LLASGSA----------DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGA  699 (704)
Q Consensus       637 ~lasgs~----------Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~-~La~gs  699 (704)
                      .++++..          ++.|.++|..+.+.+               .+++. .....++.|+|||+ +|+++.
T Consensus       280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv---------------~~i~~-g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS---------------SQISL-GHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             EEEEEeccCCcccccCCCCeEEEEECCCCEEE---------------EEEEC-CCCcCeEEECCCCCeEEEEEc
Confidence            7777543          357999999887543               33322 23578999999999 676665

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.34  E-value=1.2e-09  Score=116.38  Aligned_cols=241  Identities=9%  Similarity=-0.081  Sum_probs=161.1

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       356 ~~~fs~dg~~lasg~----------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      .++|||||++|.++.          .++.|.+||..+...........                ..   ...  +...-.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~----------------~~---~~~--~g~~p~  128 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD----------------AP---RFD--VGPYSW  128 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC----------------cc---ccc--cCCCcc
Confidence            899999999999886          36789999987532211100000                00   000  012235


Q ss_pred             EEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEE-eecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          426 SASFSPLGDFILSSSA--DTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~--Dg~I~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      .+.|+|||++|+.++.  +++|.++| .+++.+.. +... .   ++.+.|++ +.+++.+.||.+.+||. +++.....
T Consensus       129 ~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~  202 (373)
T 2mad_H          129 MNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAG  202 (373)
T ss_pred             ceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEE
Confidence            8899999999998874  57899999 98888776 5432 2   24455544 45677788999999999 77665322


Q ss_pred             c-----cCCCC-eeEEEEcCCCCEEEEEECCCcEEEEeCCCCc--EEEEeec----------CCCCEEEEEEecCCCEEE
Q 005277          502 A-----GHLSD-VDCVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIG----------HRSMILSLAMSPDGRYMA  563 (704)
Q Consensus       502 ~-----~~~~~-V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~----------h~~~i~~l~~spdg~~l~  563 (704)
                      .     ....+ .....+.+++..++..+..+.+.+.|+.++.  .+..+..          .......++++|+++.++
T Consensus       203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly  282 (373)
T 2mad_H          203 LVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             eccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence            1     11112 1234556666555555578899999997553  2222211          112344578999999888


Q ss_pred             EEeC----------CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277          564 SGDE----------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC  633 (704)
Q Consensus       564 sg~~----------dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  633 (704)
                      ++..          ++.|.++|+.+++.+.++.. ....+.+.|                                  ++
T Consensus       283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~----------------------------------s~  327 (373)
T 2mad_H          283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISV----------------------------------AQ  327 (373)
T ss_pred             EEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEE----------------------------------CC
Confidence            7653          35899999999999888853 335778888                                  99


Q ss_pred             CCC-EEEEEe-CCCcEEEEeCCCCccc
Q 005277          634 EGS-LLASGS-ADCTVKLWDVTTSTKV  658 (704)
Q Consensus       634 ~g~-~lasgs-~Dg~V~iWd~~~~~~~  658 (704)
                      ||+ +++++. .++.|.+||+.+.+.+
T Consensus       328 Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          328 DGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence            999 777777 5899999999987754

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.34  E-value=7.7e-10  Score=115.71  Aligned_cols=220  Identities=10%  Similarity=0.002  Sum_probs=145.4

Q ss_pred             eEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277          424 VYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (704)
Q Consensus       424 V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~  502 (704)
                      ..+..|+|++. ++++...++.|..||..++... .+. ....+.++.|+|+|+++++. . +.|.+||.++++......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEee
Confidence            46788999755 5556677889999999876543 333 34679999999999876654 4 459999998876543332


Q ss_pred             c----CCCCeeEEEEcCCCCEEEEEEC------CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE-eCCCeE
Q 005277          503 G----HLSDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTI  571 (704)
Q Consensus       503 ~----~~~~V~~v~~~p~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I  571 (704)
                      .    ....+..++++|+|+++++...      .+.|..++  +++... +..+......++|+|+|+.|+.+ +.++.|
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I  203 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRL  203 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence            1    1235789999999987665432      24566666  555433 33333457899999999877555 457899


Q ss_pred             EEEeCC--CC-ee-----eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277          572 MMWDLA--SG-RC-----VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA  643 (704)
Q Consensus       572 ~iwdl~--~~-~~-----~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~  643 (704)
                      .+||+.  ++ ..     +..+.........+.+                                  +++|.+.++...
T Consensus       204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~----------------------------------d~~G~lwva~~~  249 (326)
T 2ghs_A          204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVC----------------------------------DAEGHIWNARWG  249 (326)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEE----------------------------------CTTSCEEEEEET
T ss_pred             EEEEcccccCCcccCceEEEECCCCCCCCCeeEE----------------------------------CCCCCEEEEEeC
Confidence            999986  55 32     1122222233344444                                  888988887777


Q ss_pred             CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEc-cCCcEEEEeec
Q 005277          644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS-RRNLLFAAGAL  700 (704)
Q Consensus       644 Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs-~~g~~La~gs~  700 (704)
                      ++.|.+|+. ++..               +..+......+++++|+ +++..|.+++.
T Consensus       250 ~~~v~~~d~-~g~~---------------~~~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          250 EGAVDRYDT-DGNH---------------IARYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             TTEEEEECT-TCCE---------------EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCEEEEECC-CCCE---------------EEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence            789999997 3332               22233334568999998 88766655443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.33  E-value=2.3e-10  Score=118.43  Aligned_cols=227  Identities=12%  Similarity=0.048  Sum_probs=151.4

Q ss_pred             ccCCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005277          417 YQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI  495 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~  495 (704)
                      +..+.....+..|+|+++ +++++..++.|..|+.. +. ...+..+...+..++++++|+++++...++.|.+|+.+ +
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence            334455678899999998 56677788999999984 44 45555566778999999999976665566889999986 4


Q ss_pred             ceeEEecc----CCCCeeEEEEcCCCCEEEE----EEC-------------CCcEEEEeCCCCcEEEEeecCCCCEEEEE
Q 005277          496 QPLRIMAG----HLSDVDCVRWHINCNYIAT----GSS-------------DKTVRLWDVSSGECVRIFIGHRSMILSLA  554 (704)
Q Consensus       496 ~~~~~~~~----~~~~V~~v~~~p~~~~l~t----gs~-------------dg~I~iwd~~~~~~~~~~~~h~~~i~~l~  554 (704)
                      +.......    ....+..++++|+|++.++    |..             .+.|..||..+++.....  .......++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~  194 (305)
T 3dr2_A          117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLA  194 (305)
T ss_dssp             CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEE
T ss_pred             CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceE
Confidence            43222211    1234678999999998886    332             256888888777655443  345678899


Q ss_pred             EecCCCEEEEEeCC------CeEEEEeCCCCeeeee---e-cCCCceeeeeeeeeeehccccccccccccccceeeeeee
Q 005277          555 MSPDGRYMASGDED------GTIMMWDLASGRCVTP---L-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT  624 (704)
Q Consensus       555 ~spdg~~l~sg~~d------g~I~iwdl~~~~~~~~---~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (704)
                      |+|||+.|+.+...      +.|.+||+..+. +..   + ....+....+.+                           
T Consensus       195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~---------------------------  246 (305)
T 3dr2_A          195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCV---------------------------  246 (305)
T ss_dssp             ECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEE---------------------------
T ss_pred             EcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEE---------------------------
Confidence            99999988877665      789999987654 211   1 111122223333                           


Q ss_pred             EEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          625 IIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       625 ~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                             +++|++.++ +.+ .|.+|+... ..               +..+.... .+.+++|++++..|.+++.++
T Consensus       247 -------d~~G~lwv~-~~~-gv~~~~~~g-~~---------------~~~~~~~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          247 -------DRGGWLWSS-SGT-GVCVFDSDG-QL---------------LGHIPTPG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             -------CTTSCEEEC-CSS-EEEEECTTS-CE---------------EEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred             -------CCCCCEEEe-cCC-cEEEECCCC-CE---------------EEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence                   888885544 444 499999743 22               22222222 478899999988777776543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.25  E-value=2e-10  Score=133.19  Aligned_cols=197  Identities=14%  Similarity=0.090  Sum_probs=135.0

Q ss_pred             CccCeEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe--------
Q 005277          420 HSGPVYSASFSPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT--------  486 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~-----s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~--------  486 (704)
                      |...+.+++|||||++|+-+     +...+|++||+.+++.+.... +......++|+ ||+.|+.++.+..        
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            55578899999999988832     333579999999988654311 11123578999 9999999887743        


Q ss_pred             -----EEEEECCCCce--eEEecc---CCCCeeEEEEcCCCCEEEEEEC----CCcEEEEeCCCCc-EEEEeecCCCCEE
Q 005277          487 -----ARIWSMDRIQP--LRIMAG---HLSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGE-CVRIFIGHRSMIL  551 (704)
Q Consensus       487 -----i~lwd~~~~~~--~~~~~~---~~~~V~~v~~~p~~~~l~tgs~----dg~I~iwd~~~~~-~~~~~~~h~~~i~  551 (704)
                           |++|++.+...  ...+..   |...+..+.|+|+|++|+....    ...|++||+.++. ....+..+.....
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~  284 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV  284 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence                 99999987643  334432   3445788999999999866543    3589999998763 3445556666665


Q ss_pred             EEEEecCCCEEEEEe-C---CCeEEEEeCCCCee--eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277          552 SLAMSPDGRYMASGD-E---DGTIMMWDLASGRC--VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI  625 (704)
Q Consensus       552 ~l~~spdg~~l~sg~-~---dg~I~iwdl~~~~~--~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (704)
                      .. |+++|..|+..+ .   .+.|..||+.++..  ...+..|...+.  .|                            
T Consensus       285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~----------------------------  333 (693)
T 3iuj_A          285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TV----------------------------  333 (693)
T ss_dssp             EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EE----------------------------
T ss_pred             EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EE----------------------------
Confidence            55 667766655444 3   36899999988754  344555655443  55                            


Q ss_pred             EeecccCCCCCEEEEEeC-CC--cEEEEeCCCC
Q 005277          626 IYFGCASCEGSLLASGSA-DC--TVKLWDVTTS  655 (704)
Q Consensus       626 ~~~~~~s~~g~~lasgs~-Dg--~V~iWd~~~~  655 (704)
                            +++++.|+.... +|  .|++|++..+
T Consensus       334 ------s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          334 ------HSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             ------EEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             ------EEECCEEEEEEEECCeeEEEEEECCCC
Confidence                  778887766654 44  6889988743

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.23  E-value=9.3e-10  Score=116.35  Aligned_cols=244  Identities=12%  Similarity=0.047  Sum_probs=160.7

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       356 ~~~fs~dg~~lasg~----------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      .+++||||+++.++.          .++.|.+||..+...........+.                   +  ......-.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~-------------------r--~~~g~~P~  140 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP-------------------R--FLVGTYPW  140 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC-------------------C--CCBSCCGG
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc-------------------c--cccCCCCc
Confidence            399999999887765          3678999998763321110000000                   0  00011345


Q ss_pred             EEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEec
Q 005277          426 SASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMA  502 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-~~~~~~~~  502 (704)
                      .+.|+|||++++.+..  +++|.++|+.+++.+..+....  . ...+....+.|++.+.||.+.+.++.. ++......
T Consensus       141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~  217 (386)
T 3sjl_D          141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT  217 (386)
T ss_dssp             GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred             eEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec
Confidence            6899999999988764  6899999999999988886422  1 223333556778888999999999976 44432221


Q ss_pred             cCC----CCe-eEEEEc-CCCCEEEEEECCCcEEEEeCCCCcE--EEEee---c-------CCCCEEEEEEecCCCEEEE
Q 005277          503 GHL----SDV-DCVRWH-INCNYIATGSSDKTVRLWDVSSGEC--VRIFI---G-------HRSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       503 ~~~----~~V-~~v~~~-p~~~~l~tgs~dg~I~iwd~~~~~~--~~~~~---~-------h~~~i~~l~~spdg~~l~s  564 (704)
                      .+.    ..+ ....|. ++|++++ .+.+|.|++.|+.++..  +..+.   .       ..+.+..++++|+++.++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV  296 (386)
T 3sjl_D          218 EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL  296 (386)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEE
Confidence            111    122 124564 5675555 55689999999976642  22121   0       1123345788999998887


Q ss_pred             EeC----------CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC
Q 005277          565 GDE----------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE  634 (704)
Q Consensus       565 g~~----------dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  634 (704)
                      ...          .+.|.+.|+.+++.+..+..- ..++++.+                                  +++
T Consensus       297 ~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lav----------------------------------s~D  341 (386)
T 3sjl_D          297 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINV----------------------------------SQD  341 (386)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEE----------------------------------CSS
T ss_pred             EeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEE----------------------------------CCC
Confidence            643          257999999999999887532 36778888                                  999


Q ss_pred             CC-EEEEE-eCCCcEEEEeCCCCcccc
Q 005277          635 GS-LLASG-SADCTVKLWDVTTSTKVL  659 (704)
Q Consensus       635 g~-~lasg-s~Dg~V~iWd~~~~~~~~  659 (704)
                      ++ +|+++ ..++.|.++|..+++.+.
T Consensus       342 ~~~~ly~tn~~~~~VsViD~~t~k~~~  368 (386)
T 3sjl_D          342 EKPLLYALSTGDKTLYIHDAESGEELR  368 (386)
T ss_dssp             SSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             CCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence            86 66664 558999999999887643

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.21  E-value=2.6e-09  Score=112.89  Aligned_cols=255  Identities=14%  Similarity=0.079  Sum_probs=165.2

Q ss_pred             cCCCCEEEEEeC-----CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC
Q 005277          360 SQDGSLVAGGFS-----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD  434 (704)
Q Consensus       360 s~dg~~lasg~~-----dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  434 (704)
                      .|+++.+.+...     ++.|.+.|..+.                            +.......-..+  .++++||++
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~----------------------------~v~~~I~vG~~P--~va~spDG~   90 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAG----------------------------RVIGMIDGGFLP--NPVVADDGS   90 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTT----------------------------EEEEEEEECSSC--EEEECTTSS
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCC----------------------------eEEEEEECCCCC--cEEECCCCC
Confidence            577777777654     578999998752                            222222222234  499999999


Q ss_pred             EEEEEe----------CCCeEEEEeCCCCceeEEeecC-------CcCeeEEEEcCCCCEEEEEeC--CCeEEEEECCCC
Q 005277          435 FILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRI  495 (704)
Q Consensus       435 ~l~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~v~~sp~~~~l~sgs~--dg~i~lwd~~~~  495 (704)
                      ++++++          .+++|.+||..+.+.+..+.-.       ......+.|+|+|++++++..  ++.|.++|+.+.
T Consensus        91 ~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~  170 (386)
T 3sjl_D           91 FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK  170 (386)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred             EEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC
Confidence            888765          3678999999999988877532       124668999999999988864  689999999999


Q ss_pred             ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEEeecC----CCCEE-EEEEe-cCCCEEEEEeCC
Q 005277          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGH----RSMIL-SLAMS-PDGRYMASGDED  568 (704)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h----~~~i~-~l~~s-pdg~~l~sg~~d  568 (704)
                      +.+..+....  . ...+......+++.+.||++.+.++.+ ++.......+    ..++. ...|. ++|++++ .+.+
T Consensus       171 ~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~  246 (386)
T 3sjl_D          171 AFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYT  246 (386)
T ss_dssp             EEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTT
T ss_pred             cEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCC
Confidence            9888875321  1 222333446777888899999999976 5543322111    12221 24664 6786555 5568


Q ss_pred             CeEEEEeCCCCe--eeeeecCC----------CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC
Q 005277          569 GTIMMWDLASGR--CVTPLMGH----------TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS  636 (704)
Q Consensus       569 g~I~iwdl~~~~--~~~~~~~h----------~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  636 (704)
                      |.|.+.|+.++.  .+..+...          .+....+.+                                  +++++
T Consensus       247 g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~----------------------------------~~~~~  292 (386)
T 3sjl_D          247 GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY----------------------------------HRALD  292 (386)
T ss_dssp             SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE----------------------------------ETTTT
T ss_pred             CEEEEEECCCCcceeecceeccccccccccccCCCcceeeE----------------------------------CCCCC
Confidence            999999987654  22222100          001111222                                  67777


Q ss_pred             EEEEEeC----------CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCc-EEEEe
Q 005277          637 LLASGSA----------DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAG  698 (704)
Q Consensus       637 ~lasgs~----------Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~-~La~g  698 (704)
                      .++....          .+.|.+.|+.+.+.+               ..++. ..++..+.|++|++ +|.++
T Consensus       293 ~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~---------------~~i~v-g~~~~~lavs~D~~~~ly~t  349 (386)
T 3sjl_D          293 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERL---------------AKFEM-GHEIDSINVSQDEKPLLYAL  349 (386)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---------------EEEEE-EEEECEEEECSSSSCEEEEE
T ss_pred             eEEEEeccccccccCCCCCEEEEEECCCCeEE---------------EEEEC-CCCcceEEECCCCCeEEEEE
Confidence            7766542          257999999887654               22222 23688999999996 55554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.20  E-value=8.2e-12  Score=133.25  Aligned_cols=185  Identities=14%  Similarity=0.070  Sum_probs=109.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC-eeE
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDC  510 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~-V~~  510 (704)
                      ++..+++++.||.|+.||..+++.+..+..  .++.+..+..++..+++++.||.++.||..+++.+..+..+... +.+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            477899999999999999999999988876  55666666667878888889999999999988877665433211 110


Q ss_pred             -EEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCC
Q 005277          511 -VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT  589 (704)
Q Consensus       511 -v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~  589 (704)
                       ..+ ..+..+++|+.++.|+.||..+|+.+..+..+.    ...++|++..+++++.|+.|+.||..+|+.+..+..+.
T Consensus        86 sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~  160 (369)
T 2hz6_A           86 SPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD  160 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred             CceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence             011 135578888889999999999999988776543    24566788899999999999999999998765543111


Q ss_pred             ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC---CCEEEEEeCCCcEEEEeCCCCcccc
Q 005277          590 SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE---GSLLASGSADCTVKLWDVTTSTKVL  659 (704)
Q Consensus       590 ~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---g~~lasgs~Dg~V~iWd~~~~~~~~  659 (704)
                        .....+                                  +.+   ...+++++.||.|+.||..+++...
T Consensus       161 --~~~~~~----------------------------------~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W  197 (369)
T 2hz6_A          161 --YAASLP----------------------------------EDDVDYKMSHFVSNGDGLVVTVDSESGDVLW  197 (369)
T ss_dssp             --ECCBCC----------------------------------CCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred             --ccCccc----------------------------------cCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence              111111                                  222   1467778899999999999887643

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.16  E-value=5.4e-09  Score=112.41  Aligned_cols=77  Identities=8%  Similarity=0.078  Sum_probs=62.9

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeecC-------CcCeeEEEEcCCCCEEEEEeC--CCe
Q 005277          426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT  486 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~v~~sp~~~~l~sgs~--dg~  486 (704)
                      .+.++||+++|+++.          .++.|.++|..+.+.+..+.-.       ......+.|+|+|++++++..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            899999999888775          4678999999999988776521       234568999999999999874  588


Q ss_pred             EEEEECCCCceeEEec
Q 005277          487 ARIWSMDRIQPLRIMA  502 (704)
Q Consensus       487 i~lwd~~~~~~~~~~~  502 (704)
                      |.+.|+.+.+.+..+.
T Consensus       202 VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             EEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCeEEEEEE
Confidence            9999999988776665

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.12  E-value=2.5e-11  Score=129.43  Aligned_cols=188  Identities=12%  Similarity=0.005  Sum_probs=107.3

Q ss_pred             CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeC
Q 005277          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA  441 (704)
Q Consensus       362 dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~  441 (704)
                      ++..+++|+.||.|..||..+....                            ..+..  +++.+..+..++..+++++.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~----------------------------W~~~~--~~~~s~p~~~~g~~~v~~s~   57 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIK----------------------------WTLKE--DPVLQVPTHVEEPAFLPDPN   57 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEE----------------------------EEEEC--CCSCCCC-----CCEEECTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEE----------------------------EEecC--CCceecceEcCCCEEEEeCC
Confidence            5778999999999999998763221                            11111  33444445566777888889


Q ss_pred             CCeEEEEeCCCCceeEEeecCCcC-eeE-EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCE
Q 005277          442 DTTIRLWSTKLNANLVCYKGHNYP-VWD-VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY  519 (704)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~~~-V~~-v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~  519 (704)
                      ||.|+.||..+++.+..+..+... +.+ ..+. .+..+++|+.++.++.||..+++.+..+..+.    ...++|++..
T Consensus        58 dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~  132 (369)
T 2hz6_A           58 DGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSL  132 (369)
T ss_dssp             TCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------
T ss_pred             CCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCE
Confidence            999999999999887766543211 110 0111 34567888889999999999998887776543    2345678889


Q ss_pred             EEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC---CEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277          520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASGDEDGTIMMWDLASGRCVTPLM  586 (704)
Q Consensus       520 l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg---~~l~sg~~dg~I~iwdl~~~~~~~~~~  586 (704)
                      +++++.++.|+.||.++|+.+..+..+.  ....++++++   ..+++++.||.|..||..+|+.+....
T Consensus       133 v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          133 LYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            9999999999999999998776654221  1223333332   567788999999999999998877665

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.07  E-value=1.4e-08  Score=117.17  Aligned_cols=186  Identities=12%  Similarity=0.072  Sum_probs=127.8

Q ss_pred             CCCeEEEEeCCCCceeEEeecCC------------------------------cCe-eEEEEcCCCCEEEEEeCCCe---
Q 005277          441 ADTTIRLWSTKLNANLVCYKGHN------------------------------YPV-WDVQFNPQGHYFASSSHDRT---  486 (704)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~------------------------------~~V-~~v~~sp~~~~l~sgs~dg~---  486 (704)
                      .+|.|+.||..+++.+..+....                              ..+ ..++++|++..++.++.++.   
T Consensus       181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~  260 (689)
T 1yiq_A          181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWD  260 (689)
T ss_dssp             CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccc
Confidence            37899999999999987765210                              011 25788898889999887764   


Q ss_pred             ----------------EEEEECCCCceeEEecc--CC-------CCeeEEEEcCCCC---EEEEEECCCcEEEEeCCCCc
Q 005277          487 ----------------ARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINCN---YIATGSSDKTVRLWDVSSGE  538 (704)
Q Consensus       487 ----------------i~lwd~~~~~~~~~~~~--~~-------~~V~~v~~~p~~~---~l~tgs~dg~I~iwd~~~~~  538 (704)
                                      |..||.++++.+..+..  |.       ..+.......+|.   .++.++.+|.++++|..+|+
T Consensus       261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  340 (689)
T 1yiq_A          261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE  340 (689)
T ss_dssp             HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence                            99999999999887764  21       1122222223554   78899999999999999999


Q ss_pred             EEEEeecCC----------------------------C-----------CEEEEEEecCCCEEEEEeC------------
Q 005277          539 CVRIFIGHR----------------------------S-----------MILSLAMSPDGRYMASGDE------------  567 (704)
Q Consensus       539 ~~~~~~~h~----------------------------~-----------~i~~l~~spdg~~l~sg~~------------  567 (704)
                      .+.......                            .           ....++++|+...++++..            
T Consensus       341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~  420 (689)
T 1yiq_A          341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA  420 (689)
T ss_dssp             EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred             EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence            874332110                            0           0113788998888877643            


Q ss_pred             ---------------------------------CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcccccccccccc
Q 005277          568 ---------------------------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKV  614 (704)
Q Consensus       568 ---------------------------------dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~  614 (704)
                                                       +|.|..||+.+++.+-.+..+.. +..-.+                 
T Consensus       421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~-----------------  482 (689)
T 1yiq_A          421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTL-----------------  482 (689)
T ss_dssp             CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEE-----------------
T ss_pred             ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccc-----------------
Confidence                                             36677777777776655543321 111112                 


Q ss_pred             ccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277          615 STGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT  661 (704)
Q Consensus       615 ~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~  661 (704)
                                       +..+.++++|+.||.|+.||..+++.+.+.
T Consensus       483 -----------------~tagglvf~gt~dg~l~a~D~~tG~~lw~~  512 (689)
T 1yiq_A          483 -----------------STAGNLVFEGSADGRVIAYAADTGEKLWEQ  512 (689)
T ss_dssp             -----------------EETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             -----------------eECCCEEEEECCCCcEEEEECCCCccceee
Confidence                             456779999999999999999999876543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.04  E-value=1.9e-08  Score=115.74  Aligned_cols=241  Identities=12%  Similarity=0.062  Sum_probs=156.7

Q ss_pred             CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeC
Q 005277          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA  441 (704)
Q Consensus       362 dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~  441 (704)
                      ++..|.+++.|+.|..+|..+....-........               ..   .......++    .  .+..++.++.
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~---------------~~---~~~~~~~p~----v--~~~~v~v~~~  182 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQ---------------KG---SLTITGAPR----V--FKGKVIIGNG  182 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTC---------------CS---SCBCCSCCE----E--ETTEEEECCB
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCc---------------Cc---CcccccCcE----E--ECCEEEEEec
Confidence            3567888888999999998764332211100000               00   000011121    1  1344554443


Q ss_pred             ------CCeEEEEeCCCCceeEEeecCCcC--------------------------------eeEEEEcCCCCEEEEEeC
Q 005277          442 ------DTTIRLWSTKLNANLVCYKGHNYP--------------------------------VWDVQFNPQGHYFASSSH  483 (704)
Q Consensus       442 ------Dg~I~lwd~~~~~~~~~~~~h~~~--------------------------------V~~v~~sp~~~~l~sgs~  483 (704)
                            +|.|+.||..+++.+..+......                                ...++++|++..++.++.
T Consensus       183 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~  262 (677)
T 1kb0_A          183 GAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG  262 (677)
T ss_dssp             CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred             ccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECC
Confidence                  799999999999998877643211                                125788898888888876


Q ss_pred             CC-------------------eEEEEECCCCceeEEecc--CC-------CCeeEEEEcCCC---CEEEEEECCCcEEEE
Q 005277          484 DR-------------------TARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINC---NYIATGSSDKTVRLW  532 (704)
Q Consensus       484 dg-------------------~i~lwd~~~~~~~~~~~~--~~-------~~V~~v~~~p~~---~~l~tgs~dg~I~iw  532 (704)
                      ++                   .|..+|.++++.+..+..  |.       .....+....+|   ..+++++.+|.++++
T Consensus       263 ~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~l  342 (677)
T 1kb0_A          263 NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVL  342 (677)
T ss_dssp             CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEE
Confidence            64                   599999999998877663  21       112223333467   688999999999999


Q ss_pred             eCCCCcEEEEeecCC-----------CCE------------------------EEEEEecCCCEEEEEeCC---------
Q 005277          533 DVSSGECVRIFIGHR-----------SMI------------------------LSLAMSPDGRYMASGDED---------  568 (704)
Q Consensus       533 d~~~~~~~~~~~~h~-----------~~i------------------------~~l~~spdg~~l~sg~~d---------  568 (704)
                      |..+|+.+..+....           .++                        ..++++|++.++++...+         
T Consensus       343 D~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~  422 (677)
T 1kb0_A          343 DRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDK  422 (677)
T ss_dssp             ETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECT
T ss_pred             ECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccc
Confidence            999999887654221           011                        156889998888776432         


Q ss_pred             ----------------------------------CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcccccccccccc
Q 005277          569 ----------------------------------GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKV  614 (704)
Q Consensus       569 ----------------------------------g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~  614 (704)
                                                        |.|..||+.+++.+-.+.. ..+++...+                 
T Consensus       423 ~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~-----------------  484 (677)
T 1kb0_A          423 KWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTL-----------------  484 (677)
T ss_dssp             TCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEE-----------------
T ss_pred             ccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcce-----------------
Confidence                                              6788888888877665542 222222222                 


Q ss_pred             ccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277          615 STGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT  661 (704)
Q Consensus       615 ~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~  661 (704)
                                       ...+.+++.|+.||.+++||..+++.+..+
T Consensus       485 -----------------~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          485 -----------------TTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (677)
T ss_dssp             -----------------EETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             -----------------EeCCCEEEEECCCCcEEEEECCCCceeeee
Confidence                             556778899999999999999999876544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.00  E-value=4.7e-08  Score=104.05  Aligned_cols=151  Identities=14%  Similarity=0.184  Sum_probs=108.7

Q ss_pred             EEc--CCCCEEE-EEeCCCeEEEEeCCCC----ceeEEee------c-CCcCeeEEEEcCCCCEEEEEeCC------CeE
Q 005277          428 SFS--PLGDFIL-SSSADTTIRLWSTKLN----ANLVCYK------G-HNYPVWDVQFNPQGHYFASSSHD------RTA  487 (704)
Q Consensus       428 ~~s--p~~~~l~-s~s~Dg~I~lwd~~~~----~~~~~~~------~-h~~~V~~v~~sp~~~~l~sgs~d------g~i  487 (704)
                      .++  +++++|+ ++..+++|.++|+.+.    +...++.      . ....-..+..+|+| .++++..+      |.+
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            446  7788776 5667788999999755    4455552      0 11234567889999 77776655      789


Q ss_pred             EEEECCCCceeEEeccCCCC---eeEEEEcCCCCEEEEEE-------------------CCCcEEEEeCCCCcEEEEeec
Q 005277          488 RIWSMDRIQPLRIMAGHLSD---VDCVRWHINCNYIATGS-------------------SDKTVRLWDVSSGECVRIFIG  545 (704)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~---V~~v~~~p~~~~l~tgs-------------------~dg~I~iwd~~~~~~~~~~~~  545 (704)
                      .++|.++.+.+..+.....+   -..+.|+|+++.+++..                   ...+|.+||+.+++.+..+..
T Consensus       167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred             EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence            99999999998888632222   23478899999888874                   368999999999988877764


Q ss_pred             C-C-CCEEEEEE--ecCCCEEEEEe------CCCeEEEEeCCCC
Q 005277          546 H-R-SMILSLAM--SPDGRYMASGD------EDGTIMMWDLASG  579 (704)
Q Consensus       546 h-~-~~i~~l~~--spdg~~l~sg~------~dg~I~iwdl~~~  579 (704)
                      . . .....+.|  +|+|+++++++      .+++|.+|....+
T Consensus       247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g  290 (462)
T 2ece_A          247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG  290 (462)
T ss_dssp             CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred             CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC
Confidence            2 1 23455656  99999988877      4668888776544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.99  E-value=2.7e-08  Score=103.34  Aligned_cols=209  Identities=13%  Similarity=0.045  Sum_probs=144.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEE
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~  512 (704)
                      +..|+.++.++.|..+|.. ++....+..+...+.++...+++. ++.++.++.+..||.. ++....+......+.++.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            5567788889999999998 777777766666677777877776 6667788999999998 777766665566777888


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCcee
Q 005277          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV  592 (704)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V  592 (704)
                      ..+++.+. +++  +.|..|| .+++....+......+.++...++|. |..++.++.|..+| .+++.+..+......+
T Consensus       184 ~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~  257 (330)
T 3hxj_A          184 IGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRIE  257 (330)
T ss_dssp             ECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCCC
T ss_pred             EcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCcc
Confidence            87777644 444  8899999 78887777766666788888988875 55566778888888 4565555544333222


Q ss_pred             eeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcccccc
Q 005277          593 WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS  672 (704)
Q Consensus       593 ~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~  672 (704)
                      .++..                                  .+++ .|..|+.+|.|..+|. ++....             
T Consensus       258 ~~~~~----------------------------------~~~g-~l~v~t~~ggl~~~d~-~g~~~~-------------  288 (330)
T 3hxj_A          258 SSPVI----------------------------------GNTD-TIYFGSYDGHLYAINP-DGTEKW-------------  288 (330)
T ss_dssp             SCCEE----------------------------------CTTS-CEEEECTTCEEEEECT-TSCEEE-------------
T ss_pred             ccceE----------------------------------cCCC-eEEEecCCCCEEEECC-CCcEEE-------------
Confidence            22222                                  4344 5667788888999985 443321             


Q ss_pred             ccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277          673 LKTLPTKSTPVYSLQFSRRNLLFAAGALSK  702 (704)
Q Consensus       673 l~~~~~~~~~V~~l~fs~~g~~La~gs~dg  702 (704)
                        .+......+.++...++|.+.+ |+.+|
T Consensus       289 --~~~~~~~~~~~~~~d~~g~l~~-gt~~G  315 (330)
T 3hxj_A          289 --NFETGSWIIATPVIDENGTIYF-GTRNG  315 (330)
T ss_dssp             --EEECSSCCCSCCEECTTCCEEE-ECTTS
T ss_pred             --EEEcCCccccceEEcCCCEEEE-EcCCC
Confidence              1112234566677777887555 55554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.98  E-value=7.5e-07  Score=89.77  Aligned_cols=158  Identities=9%  Similarity=-0.003  Sum_probs=106.1

Q ss_pred             cCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCE-EEEEeCCCeEEEEECCCCceeE
Q 005277          422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~-l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      ..+.+++|++++..|+ +...++.|..++.........+.........++++|++.. +++....+.|.+++++......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            4578999999776665 4556789999999865543333333346789999996554 4455567899999997644333


Q ss_pred             EeccCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCCCcEEEEe-ecCCCCEEEEEEecCCCEEEEE-eCCCeEEEE
Q 005277          500 IMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASG-DEDGTIMMW  574 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~I~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iw  574 (704)
                      ...........++++|++..|+.+..   .+.|..+++.... ...+ ...-.....++++|++..|+.+ ...+.|.++
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence            33323356789999997666665554   3688888875432 2322 2333467899999987766554 456799999


Q ss_pred             eCCCCe
Q 005277          575 DLASGR  580 (704)
Q Consensus       575 dl~~~~  580 (704)
                      |+....
T Consensus       195 ~~~g~~  200 (267)
T 1npe_A          195 NPAQPG  200 (267)
T ss_dssp             ETTEEE
T ss_pred             ecCCCc
Confidence            987543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.98  E-value=2.2e-08  Score=105.83  Aligned_cols=194  Identities=7%  Similarity=-0.044  Sum_probs=127.0

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeecC-------CcCeeEEEEcCCCCEEEEEeC--CCe
Q 005277          426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT  486 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~v~~sp~~~~l~sgs~--dg~  486 (704)
                      .+.++||+++++++.          .+++|.+||+.+++.+..+...       ......+.++|+|++++++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999988876          3789999999999999888643       123568999999999998874  467


Q ss_pred             EEE--EECCCCceeEEecc-C-----------------CCCeeEEEE--------------------------cCCCCEE
Q 005277          487 ARI--WSMDRIQPLRIMAG-H-----------------LSDVDCVRW--------------------------HINCNYI  520 (704)
Q Consensus       487 i~l--wd~~~~~~~~~~~~-~-----------------~~~V~~v~~--------------------------~p~~~~l  520 (704)
                      +.+  +|+.+   +..+.. .                 .+.+..+..                          .+++..+
T Consensus       149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~  225 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence            888  88865   222210 0                 000000000                          2233333


Q ss_pred             EEEECCCcEEEEeCCCCc--EEEEeec-------CC---CCEEEEEEecCCCEEEEEeC---------CCeEEEEeCCCC
Q 005277          521 ATGSSDKTVRLWDVSSGE--CVRIFIG-------HR---SMILSLAMSPDGRYMASGDE---------DGTIMMWDLASG  579 (704)
Q Consensus       521 ~tgs~dg~I~iwd~~~~~--~~~~~~~-------h~---~~i~~l~~spdg~~l~sg~~---------dg~I~iwdl~~~  579 (704)
                      +..+. +.|.+.|+.++.  .+..+.-       +.   .....++++|+|+.++++..         ++.+.++|+.++
T Consensus       226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~  304 (368)
T 1mda_H          226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG  304 (368)
T ss_dssp             EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred             EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence            33334 666677765432  1111110       00   11122689999998887543         235669999999


Q ss_pred             eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC-EEEEEe-CCCcEEEEeCCCCcc
Q 005277          580 RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS-LLASGS-ADCTVKLWDVTTSTK  657 (704)
Q Consensus       580 ~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~lasgs-~Dg~V~iWd~~~~~~  657 (704)
                      +.+..+.... ..+.+.+                                  +++|+ ++++.. .++.|.++|+.+.+.
T Consensus       305 ~vv~~i~vg~-~p~gi~~----------------------------------s~Dg~~l~va~~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          305 QTSGPISNGH-DSDAIIA----------------------------------AQDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             CEEECCEEEE-EECEEEE----------------------------------CCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             eEEEEEECCC-CcceEEE----------------------------------CCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence            9988886433 5677777                                  99997 566666 599999999999765


Q ss_pred             c
Q 005277          658 V  658 (704)
Q Consensus       658 ~  658 (704)
                      +
T Consensus       350 v  350 (368)
T 1mda_H          350 Q  350 (368)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.97  E-value=1e-08  Score=107.92  Aligned_cols=211  Identities=9%  Similarity=0.009  Sum_probs=134.5

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          350 THNGLNCASISQDGSLVAGGFS-----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~-----dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      +-..+.+++|+++|+++++-..     ++.|.+||+.+..........                      .....+...+
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~----------------------~~~~~~~~~~  122 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLP----------------------PPITLSNSFV  122 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECC----------------------TTTSCTTCCC
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECC----------------------hhhccccccc
Confidence            4457999999999987776544     578999998753211110000                      0001233456


Q ss_pred             EEEEEcCCCCEE-EEEe---CCCeEEEEeCCCCceeEEeecCCcCee-EEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277          425 YSASFSPLGDFI-LSSS---ADTTIRLWSTKLNANLVCYKGHNYPVW-DVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       425 ~~l~~sp~~~~l-~s~s---~Dg~I~lwd~~~~~~~~~~~~h~~~V~-~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      ..+++++++..+ ++.+   .++.|.+||+.+++....+.+|..... ...+.++|..|.+.+.++.+..|.        
T Consensus       123 ~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------  194 (343)
T 2qe8_A          123 NDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------  194 (343)
T ss_dssp             CEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------
T ss_pred             ceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------
Confidence            889999865554 4544   678999999998877666655432111 134455777787788888876653        


Q ss_pred             EeccCCCCeeEEEEcCCCCEEEEEECCC-cEEEEeCC---CCc--------EEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          500 IMAGHLSDVDCVRWHINCNYIATGSSDK-TVRLWDVS---SGE--------CVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg-~I~iwd~~---~~~--------~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                            ..+..++|+|+++.|+++...+ .+..++..   .+.        .+. ..++.+....++++++|+++++...
T Consensus       195 ------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~  267 (343)
T 2qe8_A          195 ------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLA  267 (343)
T ss_dssp             ------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGG
T ss_pred             ------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccC
Confidence                  2367899999999998887766 44444421   111        011 1134445667999999999999989


Q ss_pred             CCeEEEEeCCCCeeeeeecC-CCceeeeeee
Q 005277          568 DGTIMMWDLASGRCVTPLMG-HTSCVWTLAY  597 (704)
Q Consensus       568 dg~I~iwdl~~~~~~~~~~~-h~~~V~sl~~  597 (704)
                      ++.|.+||..+++....... +.....++++
T Consensus       268 ~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~  298 (343)
T 2qe8_A          268 HSAIGVITSADRAYKLLVTDEKLSWTDSFNF  298 (343)
T ss_dssp             GTEEEEEETTTTEEEEEEECGGGSCEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEECCceecCCeeEE
Confidence            99999999856654322221 1234556666

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.92  E-value=1.9e-07  Score=99.39  Aligned_cols=194  Identities=11%  Similarity=0.136  Sum_probs=131.2

Q ss_pred             EEc--CCCCEEEE-EeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec--------cCCccCeEE
Q 005277          358 SIS--QDGSLVAG-GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY--------QGHSGPVYS  426 (704)
Q Consensus       358 ~fs--~dg~~las-g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~V~~  426 (704)
                      .++  +++++|.+ |..++.|.|+|+.+.....                        +.....        .+- ..-..
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p------------------------~~~k~ie~~~~~~~~g~-s~Ph~  142 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP------------------------KIIKVIEPEEVKKVSGY-SRLHT  142 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC------------------------EEEEEECHHHHHHHHCE-EEEEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCc------------------------eeeeeechhhcccccCC-Ccccc
Confidence            446  77776655 5568889999986422111                        111111        011 12345


Q ss_pred             EEEcCCCCEEEEEeCC------CeEEEEeCCCCceeEEeecCCc---CeeEEEEcCCCCEEEEEe---------------
Q 005277          427 ASFSPLGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNY---PVWDVQFNPQGHYFASSS---------------  482 (704)
Q Consensus       427 l~~sp~~~~l~s~s~D------g~I~lwd~~~~~~~~~~~~h~~---~V~~v~~sp~~~~l~sgs---------------  482 (704)
                      +..+|+| .++++..+      |.|.++|..+++.+..+.....   --.++.|+|+++.+++..               
T Consensus       143 ~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~  221 (462)
T 2ece_A          143 VHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEH  221 (462)
T ss_dssp             EEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTT
T ss_pred             eeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhh
Confidence            6788999 77766655      7899999999999888863222   234688999999888885               


Q ss_pred             ----CCCeEEEEECCCCceeEEeccC-C-CCeeEEEE--cCCCCEEEEEE------CCCcEEEEeCCCCcE--EEEe--e
Q 005277          483 ----HDRTARIWSMDRIQPLRIMAGH-L-SDVDCVRW--HINCNYIATGS------SDKTVRLWDVSSGEC--VRIF--I  544 (704)
Q Consensus       483 ----~dg~i~lwd~~~~~~~~~~~~~-~-~~V~~v~~--~p~~~~l~tgs------~dg~I~iwd~~~~~~--~~~~--~  544 (704)
                          .+.+|.+||+.+++.+..+... . .....+.|  +|+++++++++      .+++|.+|....|..  ...+  .
T Consensus       222 ~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~  301 (462)
T 2ece_A          222 LKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIP  301 (462)
T ss_dssp             HHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEEC
T ss_pred             hhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCC
Confidence                3689999999988777776642 1 23445656  99999998877      456888776654431  1111  1


Q ss_pred             cC----------------CCCEEEEEEecCCCEEEEEe-CCCeEEEEeCC
Q 005277          545 GH----------------RSMILSLAMSPDGRYMASGD-EDGTIMMWDLA  577 (704)
Q Consensus       545 ~h----------------~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~  577 (704)
                      ..                ......|.+||||++|+++. ..+.|.+||+.
T Consensus       302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            00                24578899999999988766 46899999986

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.90  E-value=2.3e-07  Score=99.76  Aligned_cols=186  Identities=13%  Similarity=0.052  Sum_probs=133.3

Q ss_pred             CCCCEEEEEeC-C----CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe----------CCCeEEEEECCCC
Q 005277          431 PLGDFILSSSA-D----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----------HDRTARIWSMDRI  495 (704)
Q Consensus       431 p~~~~l~s~s~-D----g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs----------~dg~i~lwd~~~~  495 (704)
                      ++++.++++.. +    ++|.++|..+++.+..+..-..+  .+.++|+|++++++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            45565555544 2    69999999999999988866666  899999999888876          4679999999999


Q ss_pred             ceeEEeccC-------CCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC-CEEEEE
Q 005277          496 QPLRIMAGH-------LSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASG  565 (704)
Q Consensus       496 ~~~~~~~~~-------~~~V~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~l~sg  565 (704)
                      +.+..+.-.       ......+.|+|+|++++++..  ++.|.+.|+.+++.+..+....    +....|+| +.+++.
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~  235 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMN  235 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEE
Confidence            888776421       234567899999999999874  5789999999999988876422    13344543 566677


Q ss_pred             eCCCeEEEEeCCCCeeeeee----cCCCceee-eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE
Q 005277          566 DEDGTIMMWDLASGRCVTPL----MGHTSCVW-TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS  640 (704)
Q Consensus       566 ~~dg~I~iwdl~~~~~~~~~----~~h~~~V~-sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las  640 (704)
                      +.||.+.+.++.+++.....    .....++. .+.+                                  ++++..++.
T Consensus       236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~----------------------------------~~dg~~~~~  281 (426)
T 3c75_H          236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAF----------------------------------SLRSGRLVW  281 (426)
T ss_dssp             ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEE----------------------------------CTTTCEEEE
T ss_pred             cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeee----------------------------------cCCCCEEEE
Confidence            78888888888666544221    11111111 1122                                  777777777


Q ss_pred             EeCCCcEEEEeCCCCc
Q 005277          641 GSADCTVKLWDVTTST  656 (704)
Q Consensus       641 gs~Dg~V~iWd~~~~~  656 (704)
                      .+..|.|.+.|+....
T Consensus       282 ~s~~g~V~ViD~~~~~  297 (426)
T 3c75_H          282 PTYTGKIFQADLTAEG  297 (426)
T ss_dssp             EBTTSEEEEEEECSSC
T ss_pred             EeCCCcEEEEeccCCc
Confidence            7778999999987644

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.87  E-value=1.8e-06  Score=91.66  Aligned_cols=224  Identities=12%  Similarity=0.016  Sum_probs=145.9

Q ss_pred             CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC--CccCeEEEEEcCCCCEEEEE
Q 005277          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG--HSGPVYSASFSPLGDFILSS  439 (704)
Q Consensus       362 dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~s~  439 (704)
                      ++..+.+++.++.|..+|..+....-..                          ...+  ...++    ..  +..++.+
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~--------------------------~~~~~~~~~p~----~~--~~~v~v~  149 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQT--------------------------KVAGEALSRPV----VS--DGLVLIH  149 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEE--------------------------ECSSCCCSCCE----EE--TTEEEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEE--------------------------eCCCceEcCCE----EE--CCEEEEE
Confidence            4557778888999999998753221110                          0000  11121    11  4578888


Q ss_pred             eCCCeEEEEeCCCCceeEEeecCCcCe-----eEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC----ee-
Q 005277          440 SADTTIRLWSTKLNANLVCYKGHNYPV-----WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD----VD-  509 (704)
Q Consensus       440 s~Dg~I~lwd~~~~~~~~~~~~h~~~V-----~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~----V~-  509 (704)
                      +.++.|..+|..+++.+..+.......     .....  .+..+++++.++.+..+|..+++.+.........    +. 
T Consensus       150 ~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~  227 (376)
T 3q7m_A          150 TSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR  227 (376)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC---------
T ss_pred             cCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccc
Confidence            899999999999999888776432211     11122  2456788888999999999999887766532110    00 


Q ss_pred             --EEEEcC--CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277          510 --CVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       510 --~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                        .+...|  .+..+++++.++.+..+|..+|+.+.....  .....+..  ++..+++++.+|.|..+|..+++.+...
T Consensus       228 ~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          228 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             --CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             ccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence              010111  356788888899999999999998876542  33444444  4667888889999999999999877655


Q ss_pred             cCCC-ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 005277          586 MGHT-SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL  659 (704)
Q Consensus       586 ~~h~-~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~  659 (704)
                      .... ..+....                                    ..+..|+.++.+|.|+++|..+++...
T Consensus       304 ~~~~~~~~~~~~------------------------------------~~~~~l~v~~~~g~l~~~d~~tG~~~~  342 (376)
T 3q7m_A          304 SDLLHRLLTSPV------------------------------------LYNGNLVVGDSEGYLHWINVEDGRFVA  342 (376)
T ss_dssp             CTTTTSCCCCCE------------------------------------EETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cccCCCcccCCE------------------------------------EECCEEEEEeCCCeEEEEECCCCcEEE
Confidence            4211 1111111                                    134688889999999999999987643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.85  E-value=5.8e-08  Score=106.90  Aligned_cols=227  Identities=12%  Similarity=0.075  Sum_probs=150.5

Q ss_pred             CCCCEEEEEe-CCCeEEEEeCCCCceeEEeec-CCcCeeEEEE-c-CCCCEEEEEe------------------CCCeEE
Q 005277          431 PLGDFILSSS-ADTTIRLWSTKLNANLVCYKG-HNYPVWDVQF-N-PQGHYFASSS------------------HDRTAR  488 (704)
Q Consensus       431 p~~~~l~s~s-~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~v~~-s-p~~~~l~sgs------------------~dg~i~  488 (704)
                      +||++++.+. .++.|.+.|+.+.++...+.- .......+++ + |++.++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            3788877654 456799999999998875542 2345778888 5 8999998885                  346899


Q ss_pred             EEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCC--------------------------------------cEE
Q 005277          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK--------------------------------------TVR  530 (704)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg--------------------------------------~I~  530 (704)
                      ++|.++.+....+.-.. ....++++|+|+++++.+.+.                                      .|.
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            99999988877766333 457788999999999988553                                      477


Q ss_pred             EEeCCC--CcE-EEEeecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCCCe------------eeeeecCCCceeee
Q 005277          531 LWDVSS--GEC-VRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGR------------CVTPLMGHTSCVWT  594 (704)
Q Consensus       531 iwd~~~--~~~-~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~~------------~~~~~~~h~~~V~s  594 (704)
                      +.|.++  ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+            .+..... ......
T Consensus       258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h  335 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLH  335 (595)
T ss_dssp             EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEE
T ss_pred             EEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcce
Confidence            778777  544 444432 23457899999999877655 67899999998653            1222221 123344


Q ss_pred             eeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcccccccc
Q 005277          595 LAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLK  674 (704)
Q Consensus       595 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~  674 (704)
                      ++|                                  +++|...++.-.|+.|.+||+........     +......+.
T Consensus       336 ~aF----------------------------------~~dG~aY~t~~ldsqV~kwdi~~a~~~~~-----g~~~~~vi~  376 (595)
T 1fwx_A          336 TAF----------------------------------DGRGNAYTSLFLDSQVVKWNIEDAIRAYA-----GEKVDPIKD  376 (595)
T ss_dssp             EEE----------------------------------CTTSEEEEEETTTTEEEEEEHHHHHHHHH-----TCSCCCEEE
T ss_pred             EEE----------------------------------CCCCeEEEEEecCCcEEEEEhhHhhhhhc-----ccccceeEE
Confidence            555                                  99995456667899999999876221000     000012233


Q ss_pred             ccCCCCcCe-----EEEEEccCCcEEEEee
Q 005277          675 TLPTKSTPV-----YSLQFSRRNLLFAAGA  699 (704)
Q Consensus       675 ~~~~~~~~V-----~~l~fs~~g~~La~gs  699 (704)
                      .++.+-.|-     ..+.++|||++|+++.
T Consensus       377 kidV~yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          377 KLDVHYQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             EEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             EeecccccccceeccceEeCCCCCEEEEcC
Confidence            343333321     2234578999888764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.84  E-value=1.9e-07  Score=107.66  Aligned_cols=152  Identities=11%  Similarity=0.143  Sum_probs=108.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecC--CcCeeEEEEcC---CCCEEEEEe------CCCeEEEEECCCCceeEEe
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNP---QGHYFASSS------HDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~v~~sp---~~~~l~sgs------~dg~i~lwd~~~~~~~~~~  501 (704)
                      +..++.++.|+.|..+|..+++.+..+...  ......+..+|   ++. +++++      .+|.|+.||.++++.+..+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            567888999999999999999998877642  11111222222   444 44443      3789999999999988776


Q ss_pred             ccCC-------------------------------CCeeEEEEcCCCCEEEEEECCCc-------------------EEE
Q 005277          502 AGHL-------------------------------SDVDCVRWHINCNYIATGSSDKT-------------------VRL  531 (704)
Q Consensus       502 ~~~~-------------------------------~~V~~v~~~p~~~~l~tgs~dg~-------------------I~i  531 (704)
                      ....                               .....+++.|+...+++++.++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            4210                               11135788898899999987764                   999


Q ss_pred             EeCCCCcEEEEeec--CC-------CCEEEEEEecCCC---EEEEEeCCCeEEEEeCCCCeeeeee
Q 005277          532 WDVSSGECVRIFIG--HR-------SMILSLAMSPDGR---YMASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       532 wd~~~~~~~~~~~~--h~-------~~i~~l~~spdg~---~l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                      ||..+|+.+..+..  |.       ..+.......+|+   .++.++.+|.++++|..+|+.+...
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  345 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAK  345 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence            99999999988764  21       1222233334675   7889999999999999999988554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.84  E-value=2e-07  Score=107.29  Aligned_cols=153  Identities=7%  Similarity=0.061  Sum_probs=110.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecC-C----cCeeEEEEcCCCCEEEEEeC------CCeEEEEECCCCceeEEe
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGH-N----YPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h-~----~~V~~v~~sp~~~~l~sgs~------dg~i~lwd~~~~~~~~~~  501 (704)
                      +..|+.++.|+.|..+|..+++.+..+..+ .    ..+.+--.. .+..+++++.      ++.|+.||..+++.+..+
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            567888999999999999999999888754 2    112110001 2345555543      799999999999988776


Q ss_pred             ccCCCC--------------------------------eeEEEEcCCCCEEEEEECCC-------------------cEE
Q 005277          502 AGHLSD--------------------------------VDCVRWHINCNYIATGSSDK-------------------TVR  530 (704)
Q Consensus       502 ~~~~~~--------------------------------V~~v~~~p~~~~l~tgs~dg-------------------~I~  530 (704)
                      ......                                ...++++|++..+++++.++                   +|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            532211                                13578889999999887664                   599


Q ss_pred             EEeCCCCcEEEEeec--CC-------CCEEEEEEecCC---CEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277          531 LWDVSSGECVRIFIG--HR-------SMILSLAMSPDG---RYMASGDEDGTIMMWDLASGRCVTPLM  586 (704)
Q Consensus       531 iwd~~~~~~~~~~~~--h~-------~~i~~l~~spdg---~~l~sg~~dg~I~iwdl~~~~~~~~~~  586 (704)
                      .+|..+|+.+..+..  |.       .....+....+|   ..++.++.+|.|+++|..+|+.+..+.
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence            999999999888763  21       122333444578   689999999999999999999887664

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.83  E-value=8e-07  Score=92.32  Aligned_cols=267  Identities=7%  Similarity=0.030  Sum_probs=151.4

Q ss_pred             CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC
Q 005277          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (704)
Q Consensus       340 p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (704)
                      |....+.+.+.-....+++|+++|+++.++..++.|..|+............  .....    . ....+...  .....
T Consensus         7 ~~~~~i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~--~~~~~----~-~~~~g~~~--~~~~~   77 (322)
T 2fp8_A            7 PILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYA--SPYWN----K-AFCENSTD--AEKRP   77 (322)
T ss_dssp             ---CEEEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEES--CTTCC----H-HHHTTCCC--GGGHH
T ss_pred             CccceeecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecc--ccccc----c-cccccccc--hhccc
Confidence            3333344433334566788999999888898999999998654211100000  00000    0 00000000  00001


Q ss_pred             CccCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeec-----CCcCeeEEEEcC-CCCEEEEEeC---------
Q 005277          420 HSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKG-----HNYPVWDVQFNP-QGHYFASSSH---------  483 (704)
Q Consensus       420 h~~~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~-----h~~~V~~v~~sp-~~~~l~sgs~---------  483 (704)
                      ..+.+.++++.+ +++ |+.+...+.|..+|..++.. ..+..     ......++++.+ +|+.+++-..         
T Consensus        78 ~~~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~  155 (322)
T 2fp8_A           78 LCGRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ  155 (322)
T ss_dssp             HHCCEEEEEEETTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred             cCCCCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccc
Confidence            123578899998 554 55555555688888775432 22211     113467899999 9987666432         


Q ss_pred             --------CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCc--EEEEeecCCCCEEE
Q 005277          484 --------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGE--CVRIFIGHRSMILS  552 (704)
Q Consensus       484 --------dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~--~~~~~~~h~~~i~~  552 (704)
                              ++.|..||..+++...... .......++|+|+++.|+++ +..+.|..|++....  ....+....+ ...
T Consensus       156 ~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~g  233 (322)
T 2fp8_A          156 QIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGN  233 (322)
T ss_dssp             HHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEE
T ss_pred             eehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCC
Confidence                    3678888887665433222 22345679999999977666 456889999987421  1222222223 788


Q ss_pred             EEEecCCCEEEEEeC----------CCeEEEEeCCCCeeeeeecCCCc----eeeeeeeeeeehccccccccccccccce
Q 005277          553 LAMSPDGRYMASGDE----------DGTIMMWDLASGRCVTPLMGHTS----CVWTLAYRFLLLVTNAYLKISDKVSTGF  618 (704)
Q Consensus       553 l~~spdg~~l~sg~~----------dg~I~iwdl~~~~~~~~~~~h~~----~V~sl~~~~~~~~~~~~~~~~~~~~~~~  618 (704)
                      +++.++|++.++...          .+.|..+|. .++.+..+....+    .+.++.+                     
T Consensus       234 i~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~---------------------  291 (322)
T 2fp8_A          234 IKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE---------------------  291 (322)
T ss_dssp             EEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE---------------------
T ss_pred             eEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE---------------------
Confidence            999999987666544          467888886 4666665543321    2222222                     


Q ss_pred             eeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          619 LFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       619 ~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                                    .++.++++....+.|.++++...
T Consensus       292 --------------~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          292 --------------HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             --------------ETTEEEEECSSCSEEEEEEC---
T ss_pred             --------------eCCEEEEeecCCCceEEEecccc
Confidence                          24566666667888999988654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.83  E-value=3.8e-07  Score=94.56  Aligned_cols=219  Identities=11%  Similarity=-0.000  Sum_probs=147.9

Q ss_pred             CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCC
Q 005277          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD  442 (704)
Q Consensus       363 g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D  442 (704)
                      +..|.+|+.++.|..+|... ..                            ......+...+.++...+++. ++.++.+
T Consensus       107 ~~~l~v~t~~~~l~~~d~~g-~~----------------------------~~~~~~~~~~~~~~~~~~~g~-l~vgt~~  156 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTDG-TE----------------------------KWRFKTKKAIYATPIVSEDGT-IYVGSND  156 (330)
T ss_dssp             TTEEEEECTTSEEEEECTTS-CE----------------------------EEEEECSSCCCSCCEECTTSC-EEEECTT
T ss_pred             CCEEEEEecCCEEEEEcCCC-CE----------------------------EEEEcCCCceeeeeEEcCCCE-EEEEcCC
Confidence            44577788888888888651 11                            011111223345556666666 6667788


Q ss_pred             CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEE
Q 005277          443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT  522 (704)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t  522 (704)
                      +.|..+|.. ++....+......+.++...+++..++ ++  +.+..|| .+++....+......+.++...+++. |.+
T Consensus       157 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v  230 (330)
T 3hxj_A          157 NYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYV  230 (330)
T ss_dssp             SEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEE
T ss_pred             CEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEE
Confidence            999999999 877777776666778888877887544 44  8899999 67777766665666788888888764 566


Q ss_pred             EECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeeh
Q 005277          523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLL  602 (704)
Q Consensus       523 gs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~  602 (704)
                      ++.++.|..+| .+++.+..+......+.++.+.++| .|..++.+|.|..+|. +++.+..+......+.++..     
T Consensus       231 ~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~-----  302 (330)
T 3hxj_A          231 TSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVI-----  302 (330)
T ss_dssp             EETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEE-----
T ss_pred             EcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEE-----
Confidence            77788899998 4666666665554445556666566 4667888888999995 67766555443334444433     


Q ss_pred             ccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          603 VTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                                                   ..+|. |..|+.+|.+++......
T Consensus       303 -----------------------------d~~g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          303 -----------------------------DENGT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             -----------------------------CTTCC-EEEECTTSCEEEEEC---
T ss_pred             -----------------------------cCCCE-EEEEcCCCeEEEEecccc
Confidence                                         56665 566888999999887653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.83  E-value=2.7e-06  Score=90.27  Aligned_cols=188  Identities=9%  Similarity=-0.004  Sum_probs=127.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCe---
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV---  508 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V---  508 (704)
                      ++..++.++.++.|..+|..+++.+..+............  .+..+++++.++.+..+|..+++.+..+.......   
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            3567888899999999999999988777654322222222  24578888899999999999998887765432211   


Q ss_pred             --eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCC-------EEEEEEec--CCCEEEEEeCCCeEEEEeCC
Q 005277          509 --DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-------ILSLAMSP--DGRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       509 --~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-------i~~l~~sp--dg~~l~sg~~dg~I~iwdl~  577 (704)
                        .....  .+..+++++.++.|..+|..+|+.+..+......       +..+...|  .+..+++++.+|.+..+|..
T Consensus       180 ~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~  257 (376)
T 3q7m_A          180 GESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR  257 (376)
T ss_dssp             CCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred             CCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence              11222  2457888888999999999999988776532110       00011111  35677888889999999999


Q ss_pred             CCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          578 SGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       578 ~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      +|+.+......  ....+                                    ..++..++.++.+|.|..+|..+++.
T Consensus       258 tG~~~w~~~~~--~~~~~------------------------------------~~~~~~l~~~~~~g~l~~~d~~tG~~  299 (376)
T 3q7m_A          258 SGQIMWKRELG--SVNDF------------------------------------IVDGNRIYLVDQNDRVMALTIDGGVT  299 (376)
T ss_dssp             TCCEEEEECCC--CEEEE------------------------------------EEETTEEEEEETTCCEEEEETTTCCE
T ss_pred             CCcEEeeccCC--CCCCc------------------------------------eEECCEEEEEcCCCeEEEEECCCCcE
Confidence            99877554321  11111                                    22356788888899999999999876


Q ss_pred             cccc
Q 005277          658 VLKT  661 (704)
Q Consensus       658 ~~~~  661 (704)
                      ....
T Consensus       300 ~w~~  303 (376)
T 3q7m_A          300 LWTQ  303 (376)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            5443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.81  E-value=9.2e-08  Score=101.05  Aligned_cols=208  Identities=12%  Similarity=-0.044  Sum_probs=126.0

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       356 ~~~fs~dg~~lasg~----------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      .+.++|||+++.++.          .++.|.+||+.+............                .   +...+  ....
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~----------------~---~~~~g--~~P~  127 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA----------------P---RFSVG--PRVH  127 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS----------------C---SCCBS--CCTT
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc----------------c---ccccC--CCcc
Confidence            799999999988886          368899999887432221100000                0   00000  1245


Q ss_pred             EEEEcCCCCEEEEEeC--CCeEEE--EeCCCCceeEEeecCCc----C---eeEEEE-----------------------
Q 005277          426 SASFSPLGDFILSSSA--DTTIRL--WSTKLNANLVCYKGHNY----P---VWDVQF-----------------------  471 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~--Dg~I~l--wd~~~~~~~~~~~~h~~----~---V~~v~~-----------------------  471 (704)
                      .+.++|||++++++..  +..|.+  +|+.+   +..+..-..    +   -.-+.+                       
T Consensus       128 ~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~  204 (368)
T 1mda_H          128 IIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA  204 (368)
T ss_dssp             SEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred             eEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEE
Confidence            6888999998887764  356888  88865   222210000    0   000111                       


Q ss_pred             --------------cCCCCEEEEEeCCCeEEEEECCCCc--eeEEecc----------CCCCeeEEEEcCCCCEEEEEEC
Q 005277          472 --------------NPQGHYFASSSHDRTARIWSMDRIQ--PLRIMAG----------HLSDVDCVRWHINCNYIATGSS  525 (704)
Q Consensus       472 --------------sp~~~~l~sgs~dg~i~lwd~~~~~--~~~~~~~----------~~~~V~~v~~~p~~~~l~tgs~  525 (704)
                                    .+++..++..+. +.+.+.|+....  .+..+..          .......+.++|+++.++++..
T Consensus       205 ~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~  283 (368)
T 1mda_H          205 QCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTV  283 (368)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred             EeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEec
Confidence                          223333333333 666666664322  1111110          0111223789999998887643


Q ss_pred             -C--------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCC-EEEEEe-CCCeEEEEeCCCCeeeeeecCCC
Q 005277          526 -D--------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMASGD-EDGTIMMWDLASGRCVTPLMGHT  589 (704)
Q Consensus       526 -d--------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~sg~-~dg~I~iwdl~~~~~~~~~~~h~  589 (704)
                       .        +.+.++|+.+++.+..+.... ...+++|+|||+ .+++.. .++.|.++|+.+++.+.++....
T Consensus       284 ~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~  357 (368)
T 1mda_H          284 EHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             ECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred             cccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence             2        356699999999888776433 578999999998 456666 59999999999999999887554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.79  E-value=7.4e-07  Score=98.13  Aligned_cols=188  Identities=10%  Similarity=0.038  Sum_probs=132.0

Q ss_pred             CCCCEEEEEeC-CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE-c-CCCCEEE
Q 005277          361 QDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF-S-PLGDFIL  437 (704)
Q Consensus       361 ~dg~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-s-p~~~~l~  437 (704)
                      +||++|.+... ++.|.+.|+........                         + .+ ........+++ + |++++++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~i-------------------------i-~i-p~g~~phg~~~~~~p~~~~v~  151 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAI-------------------------L-EI-PNAKGIHGLRPQKWPRSNYVF  151 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEE-------------------------E-EC-SSCCSEEEEEECCSSBCSEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeE-------------------------E-eC-CCCCCCcceeeeecCCCcEEE
Confidence            47888777665 56699999887432111                         1 11 11234667787 4 8999988


Q ss_pred             EEe------------------CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC--------------
Q 005277          438 SSS------------------ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--------------  485 (704)
Q Consensus       438 s~s------------------~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg--------------  485 (704)
                      +++                  .++.+.++|..+.+.+.++.--. ....++++|+|+++++.+.+.              
T Consensus       152 ~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~  230 (595)
T 1fwx_A          152 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM  230 (595)
T ss_dssp             EEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred             EecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence            884                  34689999999988887776323 346788999999998887543              


Q ss_pred             ------------------------eEEEEECCC--Cce-eEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCC
Q 005277          486 ------------------------TARIWSMDR--IQP-LRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG  537 (704)
Q Consensus       486 ------------------------~i~lwd~~~--~~~-~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~  537 (704)
                                              .|.+.|..+  ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.
T Consensus       231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence                                    366677766  434 344432 23567899999999887765 6789999999865


Q ss_pred             c------------EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          538 E------------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       538 ~------------~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                      +            .+... .-......++|+|+|...++...|+.|.+||+.+
T Consensus       310 ~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          310 DAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             HHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            3            23333 2334678999999995555677899999999876

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.78  E-value=1e-05  Score=81.26  Aligned_cols=215  Identities=9%  Similarity=0.047  Sum_probs=135.7

Q ss_pred             CEEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          353 GLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       353 ~V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      .+.+++|++++. ++++-..++.|.++++.....                            ............++++++
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~----------------------------~~~~~~~~~~p~~ia~d~   88 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP----------------------------TTIIRQDLGSPEGIALDH   88 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC----------------------------EEEECTTCCCEEEEEEET
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc----------------------------EEEEECCCCCccEEEEEe
Confidence            578899999655 555555678899999764210                            011111123568899999


Q ss_pred             CCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeEEeccCCCC
Q 005277          432 LGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDRIQPLRIMAGHLSD  507 (704)
Q Consensus       432 ~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~---dg~i~lwd~~~~~~~~~~~~~~~~  507 (704)
                      ++..|+ +....+.|.+++++.................++++|++..++.+..   .+.|..++++..............
T Consensus        89 ~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~  168 (267)
T 1npe_A           89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL  168 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSC
T ss_pred             cCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCC
Confidence            766555 4456789999998754332222222245689999996555555543   468888888754332222233456


Q ss_pred             eeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277          508 VDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (704)
Q Consensus       508 V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~  586 (704)
                      ...++++|++..|+.+. ..+.|.++|...........+ ......++.. .+..+++....+.|.++|..+++.+..+.
T Consensus       169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            78899999877766554 567899999975544333332 3345677764 34444444466899999999999888875


Q ss_pred             CCC-ceeeeeee
Q 005277          587 GHT-SCVWTLAY  597 (704)
Q Consensus       587 ~h~-~~V~sl~~  597 (704)
                      ... ...+.+.+
T Consensus       247 ~g~~~~p~gi~~  258 (267)
T 1npe_A          247 PHKQTRLYGITI  258 (267)
T ss_dssp             CSSCCCCCCEEE
T ss_pred             cccccccceeee
Confidence            433 23455555

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.74  E-value=1.6e-06  Score=86.71  Aligned_cols=193  Identities=8%  Similarity=-0.001  Sum_probs=137.5

Q ss_pred             eEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeecCC-cCeeEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeE
Q 005277          424 VYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFA-SSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~--Dg~I~lwd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~l~-sgs~dg~i~lwd~~~~~~~~  499 (704)
                      ...+.|++++.+.++.+.  ++.|+++|+.+++.+..+.-.. .....+++.  +..++ +.-.++.+.++|..+.+.+.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence            579999998654444443  5799999999999888775322 122345554  44444 44468999999999999888


Q ss_pred             EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-----CCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMMW  574 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~i~~l~~spdg~~l~sg~~dg~I~iw  574 (704)
                      .+.....  ....++++++.++++..++.|.++|..+.+.+..+.-..     ..+..+.|. +|+..+....++.|.+.
T Consensus       101 ~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI  177 (266)
T 2iwa_A          101 NFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI  177 (266)
T ss_dssp             EEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence            8753211  123355688878777778999999999998887765321     246788888 77655555568899999


Q ss_pred             eCCCCeeeeeecCCC-------------ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC-EEEE
Q 005277          575 DLASGRCVTPLMGHT-------------SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS-LLAS  640 (704)
Q Consensus       575 dl~~~~~~~~~~~h~-------------~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~las  640 (704)
                      |..+++.+..+....             .....+++                                  +++++ ++++
T Consensus       178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~----------------------------------~~~~~~lfVT  223 (266)
T 2iwa_A          178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAW----------------------------------DQENKRIFVT  223 (266)
T ss_dssp             ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEE----------------------------------ETTTTEEEEE
T ss_pred             ECCCCcEEEEEECCCcccccccccccccCceEEEEE----------------------------------cCCCCEEEEE
Confidence            999999888775321             23456666                                  88875 5566


Q ss_pred             EeCCCcEEEEeCCCC
Q 005277          641 GSADCTVKLWDVTTS  655 (704)
Q Consensus       641 gs~Dg~V~iWd~~~~  655 (704)
                      +...+.|.+.++...
T Consensus       224 gk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          224 GKLWPKLFEIKLHLV  238 (266)
T ss_dssp             ETTCSEEEEEEEEEC
T ss_pred             CCCCCeEEEEEEecc
Confidence            767889999888664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.73  E-value=7.7e-07  Score=102.18  Aligned_cols=274  Identities=9%  Similarity=0.026  Sum_probs=152.3

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------cEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          356 CASISQ-DGSLVAGGFSDS-----------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       356 ~~~fs~-dg~~lasg~~dg-----------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      ++++.+ ++++++.|+.+.           .+.+||..+..-..                         .......+...
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~-------------------------~~~~~~~~~~~  244 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD-------------------------RTVTVTKHDMF  244 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC-------------------------CEEEECSCCCS
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe-------------------------CcccCCCCCCc
Confidence            456666 899999987643           47778766421100                         00111123333


Q ss_pred             eEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEeecCCc-CeeEEEEcCCCCEEEEEe-CC-----CeEEEEECCCC
Q 005277          424 VYSASFSPLGDFILSSS-ADTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNPQGHYFASSS-HD-----RTARIWSMDRI  495 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s-~Dg~I~lwd~~~~~~~~~~~~h~~-~V~~v~~sp~~~~l~sgs-~d-----g~i~lwd~~~~  495 (704)
                      ..++++..+++.++.|+ .++.+.+||..+.+-...-..+.. .-.+++..++++.++.|+ .+     ..+.+||..+.
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            44577888999888887 456899999886643322111211 123456677999999998 44     57899999876


Q ss_pred             ceeEEe----ccCCCCeeEEEEcCCCCEEEEEECCC---------cEEEEeCCCCcEEEEeecCC---------CCEEEE
Q 005277          496 QPLRIM----AGHLSDVDCVRWHINCNYIATGSSDK---------TVRLWDVSSGECVRIFIGHR---------SMILSL  553 (704)
Q Consensus       496 ~~~~~~----~~~~~~V~~v~~~p~~~~l~tgs~dg---------~I~iwd~~~~~~~~~~~~h~---------~~i~~l  553 (704)
                      +-...-    ......-....+..++..++.|+.+|         .+..||..+.........+.         ..-.++
T Consensus       325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av  404 (656)
T 1k3i_A          325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV  404 (656)
T ss_dssp             EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred             cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence            533320    00000000011224455555555443         46788887765443322111         122445


Q ss_pred             EEec-CCCEEEEEeCCC-----------eEEEEeCCCCeeeeee--cCCCceeeeeeeeeeehcccccccccccccccee
Q 005277          554 AMSP-DGRYMASGDEDG-----------TIMMWDLASGRCVTPL--MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFL  619 (704)
Q Consensus       554 ~~sp-dg~~l~sg~~dg-----------~I~iwdl~~~~~~~~~--~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~  619 (704)
                      .|.. ++++++.|+.++           .|.+||..+.......  ..+.......                        
T Consensus       405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~------------------------  460 (656)
T 1k3i_A          405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT------------------------  460 (656)
T ss_dssp             EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE------------------------
T ss_pred             eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCC------------------------
Confidence            5544 778888887543           5777777665433221  1111111000                        


Q ss_pred             eeeeeEEeecccCCCCCEEEEEeCC-----------CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEE
Q 005277          620 FYSLTIIYFGCASCEGSLLASGSAD-----------CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF  688 (704)
Q Consensus       620 ~~~~~~~~~~~~s~~g~~lasgs~D-----------g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~f  688 (704)
                               ++..+++++++.||.+           ..+.+||..+..             +..+..++.......+..+
T Consensus       461 ---------~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~-------------W~~~~~~~~~R~~hs~a~l  518 (656)
T 1k3i_A          461 ---------SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT-------------FYKQNPNSIVRVYHSISLL  518 (656)
T ss_dssp             ---------EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE-------------EEECCCCSSCCCTTEEEEE
T ss_pred             ---------eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc-------------eeecCCCCCccccccHhhc
Confidence                     0116789999999865           468888876532             2223333333334445567


Q ss_pred             ccCCcEEEEeec
Q 005277          689 SRRNLLFAAGAL  700 (704)
Q Consensus       689 s~~g~~La~gs~  700 (704)
                      .++|++++.|+.
T Consensus       519 l~dg~v~v~GG~  530 (656)
T 1k3i_A          519 LPDGRVFNGGGG  530 (656)
T ss_dssp             CTTSCEEEEECC
T ss_pred             CCCcEEEecCCC
Confidence            799999999985

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.71  E-value=5.4e-05  Score=88.82  Aligned_cols=276  Identities=11%  Similarity=0.089  Sum_probs=169.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      ...|.++...++|.+.+ |+.++-+.+|+..+.........               . ...     ..-....|.++...
T Consensus       214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~---------------~-~~~-----~~l~~~~i~~i~~d  271 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHS---------------P-SNP-----KSISSNYIRSLAMD  271 (795)
T ss_dssp             CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCC---------------T-TCT-----TSCSCSBEEEEEEC
T ss_pred             CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecC---------------C-CCc-----cccCCCeEEEEEEc
Confidence            45688888888777554 55444477888654211100000               0 000     00123569999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeec-------CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKG-------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~-------h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~  503 (704)
                      ++|.+.+ |+.+ -|.+|+..++........       ....|.++...++|. +..|+.++-|..|+..+.... .+..
T Consensus       272 ~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~  347 (795)
T 4a2l_A          272 SQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRN  347 (795)
T ss_dssp             TTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECC
T ss_pred             CCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcC
Confidence            8887544 4555 488999876654332211       235699999998886 677888788999987654322 2221


Q ss_pred             -------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec--------CCCCEEEEEEecCCCEEEEEeCC
Q 005277          504 -------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--------HRSMILSLAMSPDGRYMASGDED  568 (704)
Q Consensus       504 -------~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--------h~~~i~~l~~spdg~~l~sg~~d  568 (704)
                             ....|.++...++|+ |.+|+.++-|..||..++........        ....|.+++..++|+.|..|+.+
T Consensus       348 ~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~  426 (795)
T 4a2l_A          348 IPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHA  426 (795)
T ss_dssp             CTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCc
Confidence                   234688998887775 66688888899999887765443211        23579999999999866677877


Q ss_pred             CeEEEEeCCCCeeeeeec----CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277          569 GTIMMWDLASGRCVTPLM----GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD  644 (704)
Q Consensus       569 g~I~iwdl~~~~~~~~~~----~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D  644 (704)
                      +-|.+||..+++......    .+...|.++..                                  .++|.+.+.. . 
T Consensus       427 ~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~----------------------------------d~~g~lwigt-~-  470 (795)
T 4a2l_A          427 GGLSILHRNSGQVENFNQRNSQLVNENVYAILP----------------------------------DGEGNLWLGT-L-  470 (795)
T ss_dssp             TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEE----------------------------------CSSSCEEEEE-S-
T ss_pred             CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEE----------------------------------CCCCCEEEEe-c-
Confidence            779999988775433221    12345555554                                  6677655544 4 


Q ss_pred             CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEe
Q 005277          645 CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG  698 (704)
Q Consensus       645 g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~g  698 (704)
                      +-|.+||..++.... .....        ..-......|.++...++|.+.+..
T Consensus       471 ~Gl~~~~~~~~~~~~-~~~~~--------~~~~~~~~~i~~i~~d~~g~lWigt  515 (795)
T 4a2l_A          471 SALVRFNPEQRSFTT-IEKEK--------DGTPVVSKQITTLFRDSHKRLWIGG  515 (795)
T ss_dssp             SCEEEEETTTTEEEE-CCBCT--------TCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred             CceeEEeCCCCeEEE-ccccc--------cccccCCceEEEEEECCCCCEEEEe
Confidence            458889977653211 00000        0001123568899998888766654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.65  E-value=7e-06  Score=82.09  Aligned_cols=200  Identities=7%  Similarity=0.002  Sum_probs=134.9

Q ss_pred             eeCCCC--EEEEEEcCCCCEEEEEeC--CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          348 INTHNG--LNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       348 ~~~~~~--V~~~~fs~dg~~lasg~~--dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      ..|...  ...++|++|+.+.++.+.  ++.|+++|+.+......                          ..+..+ ..
T Consensus        15 ~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~--------------------------i~l~~~-~f   67 (266)
T 2iwa_A           15 FPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENI--------------------------HKMDDS-YF   67 (266)
T ss_dssp             EECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEE--------------------------EECCTT-CC
T ss_pred             EECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEE--------------------------EecCCC-cc
Confidence            455543  578999998765555443  68999999876332111                          001111 11


Q ss_pred             eEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277          424 VYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (704)
Q Consensus       424 V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~  502 (704)
                      ...+++.  +..|+ +.-.++.+.++|..+.+.+..+......-+.  ++++|..++++..++.|.++|..+.+.+..+.
T Consensus        68 geGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~  143 (266)
T 2iwa_A           68 GEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHN  143 (266)
T ss_dssp             EEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             eEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            2245554  44555 5556789999999999988888633122234  44577777777778999999999988877765


Q ss_pred             cCC-----CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC-------------CCCEEEEEEecCCCE-EE
Q 005277          503 GHL-----SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-------------RSMILSLAMSPDGRY-MA  563 (704)
Q Consensus       503 ~~~-----~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-------------~~~i~~l~~spdg~~-l~  563 (704)
                      -..     ..++.+.|. ++...+....++.|.+.|..+++.+..+.-.             ......|+|+|+++. ++
T Consensus       144 Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfV  222 (266)
T 2iwa_A          144 VKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV  222 (266)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEE
T ss_pred             ECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEE
Confidence            321     236678887 6644444446789999999999998887532             135689999999865 55


Q ss_pred             EEeCCCeEEEEeCCCC
Q 005277          564 SGDEDGTIMMWDLASG  579 (704)
Q Consensus       564 sg~~dg~I~iwdl~~~  579 (704)
                      ++...+.+.+.++...
T Consensus       223 Tgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          223 TGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EETTCSEEEEEEEEEC
T ss_pred             ECCCCCeEEEEEEecc
Confidence            5667888998887654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.64  E-value=7e-05  Score=87.86  Aligned_cols=269  Identities=9%  Similarity=0.002  Sum_probs=167.8

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      ..|.++...++|. |..|+.++-|..|+...........                 ..   .  ...-....|.++...+
T Consensus       310 ~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~-----------------~~---~--~~~l~~~~V~~i~~d~  366 (795)
T 4a2l_A          310 RSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRN-----------------IP---Y--KNSLSDNVVSCIVEDK  366 (795)
T ss_dssp             SCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECC-----------------CT---T--SSSCSCSSEEEEEECT
T ss_pred             CcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcC-----------------CC---C--CCCCCCCeeEEEEECC
Confidence            5699999999887 5567777778888765321100000                 00   0  0001235699999988


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeec--------CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKG--------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-  502 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~--------h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~-  502 (704)
                      +|. |..|+.++-|..|+..++........        ....|.++...++|..+..|+.++-+.+||..+++...... 
T Consensus       367 ~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~  445 (795)
T 4a2l_A          367 DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR  445 (795)
T ss_dssp             TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred             CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence            887 55677777799999886654332211        23568999998888867788887889999998765443322 


Q ss_pred             ---cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec------CCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 005277          503 ---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG------HRSMILSLAMSPDGRYMASGDEDGTIMM  573 (704)
Q Consensus       503 ---~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~------h~~~i~~l~~spdg~~l~sg~~dg~I~i  573 (704)
                         .....|.++...+++.+. .|+. +.+.+||..+++.......      ....|.++...++|+..+.. .. -|..
T Consensus       446 ~~~l~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~-Gl~~  521 (795)
T 4a2l_A          446 NSQLVNENVYAILPDGEGNLW-LGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EE-GLSV  521 (795)
T ss_dssp             TSCCSCSCEEEEEECSSSCEE-EEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SS-CEEE
T ss_pred             CCCcCCCeeEEEEECCCCCEE-EEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-CC-ceEE
Confidence               134578899888877644 4445 4589999887765433211      23579999999998866544 44 4888


Q ss_pred             EeCCCCeeeeeecC-------CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277          574 WDLASGRCVTPLMG-------HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT  646 (704)
Q Consensus       574 wdl~~~~~~~~~~~-------h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~  646 (704)
                      ||..+++.  .+..       ....|.++..                                  .++|.+.++.. . -
T Consensus       522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~----------------------------------d~~g~lWigT~-~-G  563 (795)
T 4a2l_A          522 FKQEGLDI--QKASILPVSNVTKLFTNCIYE----------------------------------ASNGIIWVGTR-E-G  563 (795)
T ss_dssp             EEEETTEE--EECCCSCSCGGGGSCEEEEEE----------------------------------CTTSCEEEEES-S-C
T ss_pred             EeCCCCeE--EEecCCCCCCCCCCeeEEEEE----------------------------------CCCCCEEEEeC-C-C
Confidence            99877654  2221       1234455544                                  67777655443 3 5


Q ss_pred             EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEe
Q 005277          647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG  698 (704)
Q Consensus       647 V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~g  698 (704)
                      |..||..+.... ....         ...+  ....|.++...++|.+.+++
T Consensus       564 l~~~d~~~~~~~-~~~~---------~~gl--~~~~i~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          564 FYCFNEKDKQIK-RYNT---------TNGL--PNNVVYGILEDSFGRLWLST  603 (795)
T ss_dssp             EEEEETTTTEEE-EECG---------GGTC--SCSCEEEEEECTTSCEEEEE
T ss_pred             ceeECCCCCcEE-EeCC---------CCCC--chhheEEEEECCCCCEEEEc
Confidence            888887664321 0000         0011  13357888888888766554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.61  E-value=3.4e-05  Score=79.34  Aligned_cols=212  Identities=9%  Similarity=0.041  Sum_probs=128.0

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      .....++|+++|+++++-..++.|..|+....                             ....+ ...+.+.++++.+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-----------------------------~~~~~-~~~~~p~gia~~~   81 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-----------------------------QQIHA-TVEGKVSGLAFTS   81 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-----------------------------EEEEE-ECSSEEEEEEECT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-----------------------------eEEEE-eCCCCceeEEEcC
Confidence            56788999999998888778899988886531                             00011 1123578999999


Q ss_pred             CCCEEEEEeCC-C-eEEEEeCCCCceeEEeec-CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eEEec-----
Q 005277          432 LGDFILSSSAD-T-TIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRIMA-----  502 (704)
Q Consensus       432 ~~~~l~s~s~D-g-~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~-~~~~~-----  502 (704)
                      +++++++.... + .|..++..+++....... .......++..+.+..+++-..++.|.++|...+.. +....     
T Consensus        82 dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~  161 (306)
T 2p4o_A           82 NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR  161 (306)
T ss_dssp             TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred             CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence            99966555432 2 466677776664332221 122334555555555555554688899998875421 21111     


Q ss_pred             ----cCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCC-CcE--EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277          503 ----GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS-GEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (704)
Q Consensus       503 ----~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~-~~~--~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw  574 (704)
                          ........+  +|+++.|+++. ..+.|..||+.. +..  ...+.. ......++++++|+++++....+.|.++
T Consensus       162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~  238 (306)
T 2p4o_A          162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRI  238 (306)
T ss_dssp             SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEE
T ss_pred             ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEE
Confidence                111234455  78887766554 567899999874 321  122211 1345678999999887777778899999


Q ss_pred             eCCCCeeee--eecCCCceeeeeee
Q 005277          575 DLASGRCVT--PLMGHTSCVWTLAY  597 (704)
Q Consensus       575 dl~~~~~~~--~~~~h~~~V~sl~~  597 (704)
                      |.. ++...  .+.......++++|
T Consensus       239 ~~~-G~~~~~~~~~~~~~~p~~~a~  262 (306)
T 2p4o_A          239 APD-RSTTIIAQAEQGVIGSTAVAF  262 (306)
T ss_dssp             CTT-CCEEEEECGGGTCTTEEEEEE
T ss_pred             CCC-CCEEEEeecccccCCceEEEE
Confidence            975 55422  23322234566666

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.60  E-value=5.6e-06  Score=81.87  Aligned_cols=158  Identities=14%  Similarity=0.116  Sum_probs=113.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEE
Q 005277          424 VYSASFSPLGDFILSSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRI  500 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~~~~~~~~~  500 (704)
                      ...+.|+ ++.+..+++.+|  .|+.+|+.+++.+..+.... ........+++..++... .++.+.+||..+.+.+..
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            4788998 666666777766  89999999999988876433 333322233354555544 589999999999999988


Q ss_pred             eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-----CCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMMWD  575 (704)
Q Consensus       501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~i~~l~~spdg~~l~sg~~dg~I~iwd  575 (704)
                      +.-..   ....+++++..|+.+..++.|.++|..+.+.+..+....     ..++.+.|. +|+..+..-.++.|.+.|
T Consensus       123 i~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vID  198 (262)
T 3nol_A          123 FNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRID  198 (262)
T ss_dssp             EECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred             EECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence            87432   222333677777777667889999999999888765421     335567886 787665555788999999


Q ss_pred             CCCCeeeeeecC
Q 005277          576 LASGRCVTPLMG  587 (704)
Q Consensus       576 l~~~~~~~~~~~  587 (704)
                      ..+++.+..+..
T Consensus       199 p~tG~V~~~Id~  210 (262)
T 3nol_A          199 PETGKVTGIIDL  210 (262)
T ss_dssp             TTTCBEEEEEEC
T ss_pred             CCCCcEEEEEEC
Confidence            999998887753

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.59  E-value=3.2e-06  Score=97.08  Aligned_cols=185  Identities=9%  Similarity=0.048  Sum_probs=124.3

Q ss_pred             CCeEEEEeCCCCceeEEeecCC-------------------------------cCeeEEEEcCCCCEEEEEeCCC-----
Q 005277          442 DTTIRLWSTKLNANLVCYKGHN-------------------------------YPVWDVQFNPQGHYFASSSHDR-----  485 (704)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~-------------------------------~~V~~v~~sp~~~~l~sgs~dg-----  485 (704)
                      +|.|..+|..+++.+..+....                               .....+++.|.+..++.++.++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            5899999999999988775310                               0112468888888888887766     


Q ss_pred             --------------eEEEEECCCCceeEEecc--CC-------CCeeEEEEcCCCC---EEEEEECCCcEEEEeCCCCcE
Q 005277          486 --------------TARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINCN---YIATGSSDKTVRLWDVSSGEC  539 (704)
Q Consensus       486 --------------~i~lwd~~~~~~~~~~~~--~~-------~~V~~v~~~p~~~---~l~tgs~dg~I~iwd~~~~~~  539 (704)
                                    .|..+|.++++.+..+..  |.       .+.....+..+|+   .+++++.+|.++++|..+|+.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          399999999998887764  22       2222223334664   688899999999999999998


Q ss_pred             EEEeecCC------------CC------------------------EEEEEEecCCCEEEEEe-----------------
Q 005277          540 VRIFIGHR------------SM------------------------ILSLAMSPDGRYMASGD-----------------  566 (704)
Q Consensus       540 ~~~~~~h~------------~~------------------------i~~l~~spdg~~l~sg~-----------------  566 (704)
                      +.......            .+                        -..++++|+...+++..                 
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~  416 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence            74432211            00                        01267888766665422                 


Q ss_pred             -------------------CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277          567 -------------------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY  627 (704)
Q Consensus       567 -------------------~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (704)
                                         .+|.|..||+.+++.+-....+. +......                              
T Consensus       417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~------------------------------  465 (668)
T 1kv9_A          417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTL------------------------------  465 (668)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEE------------------------------
T ss_pred             cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCcee------------------------------
Confidence                               23678888888887765543221 1111111                              


Q ss_pred             ecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277          628 FGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT  661 (704)
Q Consensus       628 ~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~  661 (704)
                          ...+.++++|+.||.|++||..+++.+...
T Consensus       466 ----~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          466 ----STAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             ----EETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ----EeCCCEEEEECCcccchhhhhhcChhheEe
Confidence                445778999999999999999998876544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.59  E-value=1.6e-05  Score=89.43  Aligned_cols=111  Identities=9%  Similarity=-0.035  Sum_probs=74.3

Q ss_pred             CEEEEEeC------CCeEEEEeCCCCceeEEeecCCcC-------------------------------------e-eEE
Q 005277          434 DFILSSSA------DTTIRLWSTKLNANLVCYKGHNYP-------------------------------------V-WDV  469 (704)
Q Consensus       434 ~~l~s~s~------Dg~I~lwd~~~~~~~~~~~~h~~~-------------------------------------V-~~v  469 (704)
                      ..++.++.      ++.|..+|..+++.+..+......                                     + ..+
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~  240 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY  240 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence            34555554      789999999999998876532211                                     1 135


Q ss_pred             EEcCCCCEEEEEeCC----------------CeEEEEECCCCceeEEeccCCC---------CeeEEEEcCCCC---EEE
Q 005277          470 QFNPQGHYFASSSHD----------------RTARIWSMDRIQPLRIMAGHLS---------DVDCVRWHINCN---YIA  521 (704)
Q Consensus       470 ~~sp~~~~l~sgs~d----------------g~i~lwd~~~~~~~~~~~~~~~---------~V~~v~~~p~~~---~l~  521 (704)
                      ++.+....++.++.+                +.|..+|.++++.+..+.....         ...-+...++|+   .++
T Consensus       241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~  320 (571)
T 2ad6_A          241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS  320 (571)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE
T ss_pred             EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEE
Confidence            666766666666532                3699999999998877753211         111122224674   677


Q ss_pred             EEECCCcEEEEeCCCCcEEEEee
Q 005277          522 TGSSDKTVRLWDVSSGECVRIFI  544 (704)
Q Consensus       522 tgs~dg~I~iwd~~~~~~~~~~~  544 (704)
                      .++.+|.++++|..+|+.+..+.
T Consensus       321 ~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          321 HIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEE
T ss_pred             EeCCCcEEEEEECCCCCEEeeec
Confidence            88899999999999999887654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.53  E-value=1.1e-05  Score=79.87  Aligned_cols=200  Identities=13%  Similarity=0.121  Sum_probs=130.2

Q ss_pred             eeEEeecCCcC--eeEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcE
Q 005277          455 NLVCYKGHNYP--VWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTV  529 (704)
Q Consensus       455 ~~~~~~~h~~~--V~~v~~sp~~~~l~sgs~dg--~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I  529 (704)
                      .+..+ .|...  ...+.|+ ++.++.+.+.+|  .|+.+|+++++.++.+.... ........+.++.|+... .++.+
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEE
Confidence            34455 35433  4788998 677777777766  89999999999888876433 333322233455665554 58899


Q ss_pred             EEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC--Ccee---eeeeeeeeehcc
Q 005277          530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH--TSCV---WTLAYRFLLLVT  604 (704)
Q Consensus       530 ~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h--~~~V---~sl~~~~~~~~~  604 (704)
                      .+||..+.+.+..+....   ....+++||+.|+.+..++.|.++|..+.+.+..+...  ..++   ..+.|       
T Consensus       110 ~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~-------  179 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW-------  179 (262)
T ss_dssp             EEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE-------
T ss_pred             EEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE-------
Confidence            999999999999887433   22344467888877777889999999999888777542  2232   23444       


Q ss_pred             ccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeE
Q 005277          605 NAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY  684 (704)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~  684 (704)
                                                 . +|.+.+..-.++.|.+.|..+++....+....-...   ...........+
T Consensus       180 ---------------------------~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~---~~~~~~~~~vlN  228 (262)
T 3nol_A          180 ---------------------------V-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAE---AGPLPSPIDVLN  228 (262)
T ss_dssp             ---------------------------E-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGG---SCSCCSSCCCEE
T ss_pred             ---------------------------E-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccc---cccccCcCCceE
Confidence                                       3 566666555788999999999887654432110000   000112234568


Q ss_pred             EEEEccCCc-EEEEe
Q 005277          685 SLQFSRRNL-LFAAG  698 (704)
Q Consensus       685 ~l~fs~~g~-~La~g  698 (704)
                      .++|+|++. ++++|
T Consensus       229 GIA~dp~~~~lfVTG  243 (262)
T 3nol_A          229 GIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCEEEEEC
Confidence            999999765 45554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.51  E-value=0.00011  Score=75.45  Aligned_cols=226  Identities=10%  Similarity=0.029  Sum_probs=134.9

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeE
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLR  499 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg--~i~lwd~~~~~~~~  499 (704)
                      ....+++|+++++++++...++.|..||... .....+. ....+..+++.++|+++++....+  .|..++..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            4578899999999777777889999999875 3333333 234688999999999666554322  46667777766443


Q ss_pred             Eecc-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE-EEEee---------cCCCCEEEEEEecCCCEEEEE-eC
Q 005277          500 IMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFI---------GHRSMILSLAMSPDGRYMASG-DE  567 (704)
Q Consensus       500 ~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~---------~h~~~i~~l~~spdg~~l~sg-~~  567 (704)
                      .... .......++..+++..+++-..++.|+.+|..+++. +....         ..-.....+  +|++++|+.+ ..
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence            3221 122234555555554455544688999999876532 21111         111234555  8888766554 45


Q ss_pred             CCeEEEEeCCC-Cee--eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277          568 DGTIMMWDLAS-GRC--VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD  644 (704)
Q Consensus       568 dg~I~iwdl~~-~~~--~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D  644 (704)
                      .+.|..||+.. ++.  ...+.. ......+++                                  +++|+++++....
T Consensus       188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~v----------------------------------d~dG~l~va~~~~  232 (306)
T 2p4o_A          188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAF----------------------------------DVEGNLYGATHIY  232 (306)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEE----------------------------------BTTCCEEEECBTT
T ss_pred             CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEE----------------------------------CCCCCEEEEeCCC
Confidence            68899999864 321  000000 011122222                                  8889888887778


Q ss_pred             CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEc---cCCcEEEEeec
Q 005277          645 CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS---RRNLLFAAGAL  700 (704)
Q Consensus       645 g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs---~~g~~La~gs~  700 (704)
                      +.|.+++.. +...             .+..+...-....+++|.   +++..|.+++.
T Consensus       233 ~~V~~~~~~-G~~~-------------~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          233 NSVVRIAPD-RSTT-------------IIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             CCEEEECTT-CCEE-------------EEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CeEEEECCC-CCEE-------------EEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            899999864 3211             011222223457899998   78665555544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.49  E-value=2.7e-05  Score=80.64  Aligned_cols=152  Identities=11%  Similarity=0.022  Sum_probs=102.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec--------------------CCcCeeEEEEcC-CCCEEEEE
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--------------------HNYPVWDVQFNP-QGHYFASS  481 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~--------------------h~~~V~~v~~sp-~~~~l~sg  481 (704)
                      ...+++|.+++++++++..++.|..|+..++... .+..                    ....+..+++.+ +++ ++++
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            3567889999987888888999999998765432 2221                    012468899998 554 5555


Q ss_pred             eCCCeEEEEECCCCceeEEecc-----CCCCeeEEEEcC-CCCEEEEEEC-----------------CCcEEEEeCCCCc
Q 005277          482 SHDRTARIWSMDRIQPLRIMAG-----HLSDVDCVRWHI-NCNYIATGSS-----------------DKTVRLWDVSSGE  538 (704)
Q Consensus       482 s~dg~i~lwd~~~~~~~~~~~~-----~~~~V~~v~~~p-~~~~l~tgs~-----------------dg~I~iwd~~~~~  538 (704)
                      ...+.+..+|.+++.. ..+..     .......+++.+ +|++.++-..                 ++.|..||..+++
T Consensus        98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            5556688888775432 22221     123467899999 8877666432                 3678899987776


Q ss_pred             EEEEeecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEeCCC
Q 005277          539 CVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLAS  578 (704)
Q Consensus       539 ~~~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iwdl~~  578 (704)
                      ....... -.....++++|+|++|+.+ ...+.|.+|++..
T Consensus       177 ~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          177 TTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            4432221 2345679999999876655 5568999999875

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.46  E-value=5e-05  Score=85.48  Aligned_cols=104  Identities=10%  Similarity=-0.012  Sum_probs=73.1

Q ss_pred             CCCeEEEEeCCCCceeEEeecCCcC-------------------------------------ee-EEEEcCCCCEEEEEe
Q 005277          441 ADTTIRLWSTKLNANLVCYKGHNYP-------------------------------------VW-DVQFNPQGHYFASSS  482 (704)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~~~-------------------------------------V~-~v~~sp~~~~l~sgs  482 (704)
                      .+|.|+.+|..+++.+..+......                                     +| .+++.+....++.++
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            3799999999999998777633211                                     11 345667777777776


Q ss_pred             CC----------------CeEEEEECCCCceeEEeccCCCCe---------eEEEEc-CCC---CEEEEEECCCcEEEEe
Q 005277          483 HD----------------RTARIWSMDRIQPLRIMAGHLSDV---------DCVRWH-INC---NYIATGSSDKTVRLWD  533 (704)
Q Consensus       483 ~d----------------g~i~lwd~~~~~~~~~~~~~~~~V---------~~v~~~-p~~---~~l~tgs~dg~I~iwd  533 (704)
                      .+                +.|..+|.++++.+..+.......         .-+... .+|   ..++.++.+|.++++|
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD  339 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD  339 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEE
Confidence            55                389999999999887776432211         112222 467   5677788999999999


Q ss_pred             CCCCcEEEEee
Q 005277          534 VSSGECVRIFI  544 (704)
Q Consensus       534 ~~~~~~~~~~~  544 (704)
                      ..+|+.+....
T Consensus       340 ~~tG~~lw~~~  350 (599)
T 1w6s_A          340 RTDGALVSANK  350 (599)
T ss_dssp             TTTCCEEEEEE
T ss_pred             CCCCCEeeccc
Confidence            99999887654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.45  E-value=1.3e-05  Score=91.84  Aligned_cols=154  Identities=10%  Similarity=0.114  Sum_probs=108.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCCc-CeeEEEEcC--CCCEEEEEeC------CCeEEEEECCCCceeEEecc
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNP--QGHYFASSSH------DRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-~V~~v~~sp--~~~~l~sgs~------dg~i~lwd~~~~~~~~~~~~  503 (704)
                      +..++.++.|+.|..+|..+++.+..+..... ....+..+|  .+..+++++.      +|.|..+|.++++.+..+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            56788888999999999999999888764211 001111112  1334555543      58999999999998877642


Q ss_pred             CC-------------------------------CCeeEEEEcCCCCEEEEEECCC-------------------cEEEEe
Q 005277          504 HL-------------------------------SDVDCVRWHINCNYIATGSSDK-------------------TVRLWD  533 (704)
Q Consensus       504 ~~-------------------------------~~V~~v~~~p~~~~l~tgs~dg-------------------~I~iwd  533 (704)
                      ..                               .....+++.|....+++++.++                   .|..+|
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD  276 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence            10                               0112468888888998888776                   399999


Q ss_pred             CCCCcEEEEeec--CC-------CCEEEEEEecCCC---EEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277          534 VSSGECVRIFIG--HR-------SMILSLAMSPDGR---YMASGDEDGTIMMWDLASGRCVTPLM  586 (704)
Q Consensus       534 ~~~~~~~~~~~~--h~-------~~i~~l~~spdg~---~l~sg~~dg~I~iwdl~~~~~~~~~~  586 (704)
                      ..+|+.+..+..  |.       .+.....+..+|+   .++.++.+|.++++|..+|+.+....
T Consensus       277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~  341 (668)
T 1kv9_A          277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK  341 (668)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence            999999988764  22       2333334445776   68899999999999999999886553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.44  E-value=2.5e-05  Score=91.04  Aligned_cols=193  Identities=9%  Similarity=0.035  Sum_probs=113.3

Q ss_pred             CEEEEEEc-CCCCEEEEEeCC-C----cEEEEEcccC-CccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          353 GLNCASIS-QDGSLVAGGFSD-S----SLKVWDMAKL-GQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       353 ~V~~~~fs-~dg~~lasg~~d-g----~I~iwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      .+...+|| |||++||.+... |    .|+++|+.+. ...                        ...   +   .....
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l------------------------~~~---~---~~~~~  224 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI------------------------ADK---V---SGTNG  224 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC------------------------CCC---E---EEECS
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC------------------------Ccc---c---cCcee
Confidence            57889999 999999876542 3    4899998762 100                        000   0   11134


Q ss_pred             EEEEcCCCCEEEEEeCC-----CeEEEEeCCCCce--eEEeec-CCcCeeEEEEcCCCCEEEEEe---CCCeEEEEECCC
Q 005277          426 SASFSPLGDFILSSSAD-----TTIRLWSTKLNAN--LVCYKG-HNYPVWDVQFNPQGHYFASSS---HDRTARIWSMDR  494 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s~D-----g~I~lwd~~~~~~--~~~~~~-h~~~V~~v~~sp~~~~l~sgs---~dg~i~lwd~~~  494 (704)
                      +++|+||++.|+..+.|     ..|.++++.++..  ...+.. .......+.|+|+|++|+..+   ....|.++|+.+
T Consensus       225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            68899999988866654     3688888887642  233332 233456889999999988765   344688889887


Q ss_pred             Cc-ee--EEec-cCCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCCcEEEE-eecCCC--CEEEEEEecCCCEEE
Q 005277          495 IQ-PL--RIMA-GHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRI-FIGHRS--MILSLAMSPDGRYMA  563 (704)
Q Consensus       495 ~~-~~--~~~~-~~~~~V~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~~~~~~-~~~h~~--~i~~l~~spdg~~l~  563 (704)
                      +. ..  +.+. ........+.|+..+.+++....+    ..|..+|+.++..... +..+..  .+..+.+. .+.+++
T Consensus       305 ~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~  383 (751)
T 2xe4_A          305 GNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVV  383 (751)
T ss_dssp             CTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEE
T ss_pred             CCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEE
Confidence            52 22  3333 334455556655444344444333    3577778765322222 233443  34445544 234455


Q ss_pred             EEeCCCe--EEEEeC
Q 005277          564 SGDEDGT--IMMWDL  576 (704)
Q Consensus       564 sg~~dg~--I~iwdl  576 (704)
                      +...+|.  |.++|+
T Consensus       384 ~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          384 AGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEETTEEEEEEEEC
T ss_pred             EEEeCCEEEEEEEec
Confidence            6667775  455564

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.43  E-value=1.3e-05  Score=79.35  Aligned_cols=155  Identities=13%  Similarity=0.040  Sum_probs=113.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCee--EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW--DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~--~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      ..++.|+ ++.+..+.+.+|.|+++|+.+++.+..+ -. ....  .+++.. ++.++..-.++.+.+||..+.+.+..+
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            4688887 3556668888899999999999988777 22 2332  355543 344444457899999999999999888


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-----CCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                      .... .-..++  +++..|+.+..++.|.++|..+.+.+..+....     ..++.+.|. +|+..+..-.++.|.+.|.
T Consensus       133 ~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp  208 (268)
T 3nok_A          133 RYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDP  208 (268)
T ss_dssp             ECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECT
T ss_pred             eCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeC
Confidence            7432 223444  567888888778999999999999888765322     245677887 7865555557889999999


Q ss_pred             CCCeeeeeec
Q 005277          577 ASGRCVTPLM  586 (704)
Q Consensus       577 ~~~~~~~~~~  586 (704)
                      .+++.+..+.
T Consensus       209 ~TG~V~~~Id  218 (268)
T 3nok_A          209 ATGTVVGVID  218 (268)
T ss_dssp             TTCBEEEEEE
T ss_pred             CCCcEEEEEE
Confidence            9999887764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.43  E-value=0.0016  Score=67.42  Aligned_cols=268  Identities=12%  Similarity=0.053  Sum_probs=144.6

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      ....+.++.|.+++..+|+| ..|.| +...+.........                        .........+.++.|
T Consensus        34 ~~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~------------------------~~~~~~~~~~~~i~~   87 (327)
T 2xbg_A           34 TTATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRT------------------------LVLDHSDYRFNSVSF   87 (327)
T ss_dssp             CSSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECC------------------------CCCSCCCCEEEEEEE
T ss_pred             CCCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECC------------------------CCCCCCCccEEEEEe
Confidence            34579999998888888865 56654 33322211100000                        000112346888999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEee---cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-EEeccCC
Q 005277          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-RIMAGHL  505 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~-~~~~~~~  505 (704)
                      .+ +. ++.++.+|.|.. ..+.++.-....   .+...+..+.+.+++..++++ .+|.+.. ..+.++.- ....+..
T Consensus        88 ~~-~~-~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~  162 (327)
T 2xbg_A           88 QG-NE-GWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAI  162 (327)
T ss_dssp             ET-TE-EEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCC
T ss_pred             cC-Ce-EEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCC
Confidence            86 44 444455665544 344343322222   233457788887777766655 4554422 23333322 2223455


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeC--CCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeee
Q 005277          506 SDVDCVRWHINCNYIATGSSDKTVRLWDV--SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (704)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~--~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~  583 (704)
                      ..+..+.+.|++.+++++...+..+-+|-  .+-+.+  -......+..+.+.+++..++ ++.+|.+.+++...++.-.
T Consensus       163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~  239 (327)
T 2xbg_A          163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWG  239 (327)
T ss_dssp             CCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEEC
T ss_pred             cceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeE
Confidence            67889999999888877654333333442  222232  224456789999999987654 5567888777433233322


Q ss_pred             eec-C---CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 005277          584 PLM-G---HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL  659 (704)
Q Consensus       584 ~~~-~---h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~  659 (704)
                      .+. +   +...+.++.+                                  .+++.++++|. +|.| ++..+.+.   
T Consensus       240 ~~~~~~~~~~~~~~~v~~----------------------------------~~~~~~~~~g~-~g~i-~~S~DgG~---  280 (327)
T 2xbg_A          240 ELLSPLRRNSVGFLDLAY----------------------------------RTPNEVWLAGG-AGAL-LCSQDGGQ---  280 (327)
T ss_dssp             CCBCTTSSCCSCEEEEEE----------------------------------SSSSCEEEEES-TTCE-EEESSTTS---
T ss_pred             eccCCcccCCcceEEEEe----------------------------------cCCCEEEEEeC-CCeE-EEeCCCCc---
Confidence            221 1   2234566666                                  66677666654 6766 34444332   


Q ss_pred             ccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          660 KTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       660 ~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                               .+..+.........++++.|.+++.++++|.
T Consensus       281 ---------tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~  311 (327)
T 2xbg_A          281 ---------TWQQDVDVKKVPSNFYKILFFSPDQGFILGQ  311 (327)
T ss_dssp             ---------SCEECGGGTTSSSCCCEEEEEETTEEEEECS
T ss_pred             ---------ccEEcCccCCCCCCeEEEEEECCCceEEEcC
Confidence                     1222222112235678899987777666654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.43  E-value=4.9e-05  Score=74.46  Aligned_cols=159  Identities=11%  Similarity=0.004  Sum_probs=112.9

Q ss_pred             cCeEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceeEEeecCCcCe-eEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 005277          422 GPVYSASFSPLGDFILSSSAD--TTIRLWSTKLNANLVCYKGHNYPV-WDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~D--g~I~lwd~~~~~~~~~~~~h~~~V-~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~  498 (704)
                      .-..++.|++ +.+..+.+.+  +.|+.+|+.+++.+.......... -.+++. .++.+...-.++.+.+||.++.+.+
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEE
Confidence            3466899986 5555566665  489999999999988776433221 234443 2344444457899999999999999


Q ss_pred             EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-----CCEEEEEEecCCCEEEEEeCCCeEEE
Q 005277          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMM  573 (704)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~i~~l~~spdg~~l~sg~~dg~I~i  573 (704)
                      ..+..... =..++  +++..|+.+..++.|.++|..+.+.++.+....     ..++.+.|. +|+..+..-.+..|.+
T Consensus        99 ~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~v  174 (243)
T 3mbr_X           99 ARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIAR  174 (243)
T ss_dssp             EEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             EEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEE
Confidence            88874332 23444  567777777778899999999998888775422     345667776 7776655556889999


Q ss_pred             EeCCCCeeeeeec
Q 005277          574 WDLASGRCVTPLM  586 (704)
Q Consensus       574 wdl~~~~~~~~~~  586 (704)
                      .|..+++.+..+.
T Consensus       175 IDp~tG~V~~~id  187 (243)
T 3mbr_X          175 IDPASGKVVAWID  187 (243)
T ss_dssp             ECTTTCBEEEEEE
T ss_pred             EECCCCCEEEEEE
Confidence            9999999887764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.42  E-value=0.00029  Score=73.83  Aligned_cols=158  Identities=11%  Similarity=-0.019  Sum_probs=106.3

Q ss_pred             cCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeE
Q 005277          422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      ..+.+++|++.+..|+ +-...+.|..+++..................+++.+. +.++++-...+.|.+.+++......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            4578999998766665 5456788999999866544433333344578999874 5555666677899999998665444


Q ss_pred             EeccCCCCeeEEEEcCCCCEEEEEE-CC-CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeC
Q 005277          500 IMAGHLSDVDCVRWHINCNYIATGS-SD-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDL  576 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs-~d-g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl  576 (704)
                      ...........++++|.+..|+... .. +.|..+++............-.....++++|++..|+.+. ..+.|..+|+
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~  232 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  232 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            4444456678999999666555544 44 7788888764332222222334678999998766665554 5678999998


Q ss_pred             CCC
Q 005277          577 ASG  579 (704)
Q Consensus       577 ~~~  579 (704)
                      ...
T Consensus       233 dG~  235 (349)
T 3v64_C          233 DGS  235 (349)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.36  E-value=0.00022  Score=70.72  Aligned_cols=168  Identities=8%  Similarity=0.084  Sum_probs=115.6

Q ss_pred             eccCCccCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeec-CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005277          416 LYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (704)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~  493 (704)
                      .+.+-.+.+.+++|+|++..|+ +...++.|...|.. ++.+..+.- -....-.|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4556667899999999877555 57778889999998 777776642 23567789999999877776677899999886


Q ss_pred             CCcee---EEec------cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC---CCcEEEEee-------cCCCCEEEEE
Q 005277          494 RIQPL---RIMA------GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---SGECVRIFI-------GHRSMILSLA  554 (704)
Q Consensus       494 ~~~~~---~~~~------~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~---~~~~~~~~~-------~h~~~i~~l~  554 (704)
                      ....+   ....      ........++|+|.++.|+++.......+|.+.   .+..+....       .+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            54422   2221      133456899999999888887766555555553   111222221       1234578999


Q ss_pred             EecC-CCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277          555 MSPD-GRYMASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       555 ~spd-g~~l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                      ++|. |++++....+..+.++|.. |+.+..+
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~  210 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEM  210 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEE
Confidence            9995 5667777788899999965 5555544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.36  E-value=0.00011  Score=72.06  Aligned_cols=200  Identities=14%  Similarity=0.090  Sum_probs=128.2

Q ss_pred             eeEEeecCC--cCeeEEEEcCCCCEEEEEeCC--CeEEEEECCCCceeEEeccCCCCe-eEEEEcCCCCEEEE-EECCCc
Q 005277          455 NLVCYKGHN--YPVWDVQFNPQGHYFASSSHD--RTARIWSMDRIQPLRIMAGHLSDV-DCVRWHINCNYIAT-GSSDKT  528 (704)
Q Consensus       455 ~~~~~~~h~--~~V~~v~~sp~~~~l~sgs~d--g~i~lwd~~~~~~~~~~~~~~~~V-~~v~~~p~~~~l~t-gs~dg~  528 (704)
                      .+..+ .|.  .-...+.|++ +.++.+.+.+  ..|+.+|+.+++.++......... ..+++.  ++.|+. .-.++.
T Consensus        11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~   86 (243)
T 3mbr_X           11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred             EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence            34445 454  3466899986 5566666654  489999999999988776433221 234443  444544 446889


Q ss_pred             EEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC--CCce---eeeeeeeeeehc
Q 005277          529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--HTSC---VWTLAYRFLLLV  603 (704)
Q Consensus       529 I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~--h~~~---V~sl~~~~~~~~  603 (704)
                      +.+||..+.+.+..+......   ..+++++..|+.+..++.|.++|..+.+.+.++..  +..+   +..+.|      
T Consensus        87 v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~------  157 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW------  157 (243)
T ss_dssp             EEEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE------
T ss_pred             EEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE------
Confidence            999999999999988743322   33446788777777899999999999988877753  2222   223333      


Q ss_pred             cccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcccccccccc-CCCCcC
Q 005277          604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL-PTKSTP  682 (704)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~  682 (704)
                                                  . +|.+.+..-.+..|.+.|..+++....+.-..-...   .... ......
T Consensus       158 ----------------------------~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~---~~~~~~~~~~v  205 (243)
T 3mbr_X          158 ----------------------------V-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPD---ADALTDSTNDV  205 (243)
T ss_dssp             ----------------------------E-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTT---TTSCCCTTSSC
T ss_pred             ----------------------------e-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccc---cccccCCcCCc
Confidence                                        2 566565555678999999999887655432210000   0000 123346


Q ss_pred             eEEEEEccCC-cEEEEee
Q 005277          683 VYSLQFSRRN-LLFAAGA  699 (704)
Q Consensus       683 V~~l~fs~~g-~~La~gs  699 (704)
                      .+.++|+|++ +++++|-
T Consensus       206 lNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          206 LNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEEEETTTTEEEEEET
T ss_pred             eEEEEEcCCCCEEEEECC
Confidence            7899999965 5666653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.35  E-value=0.00049  Score=80.48  Aligned_cols=280  Identities=12%  Similarity=0.032  Sum_probs=162.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      ...|.++...++|. |..|+..+-|.+++............        .........      ....-....|.++...
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~--------~f~~~~~~~------~~~~l~~~~v~~i~~D  321 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQI--------RFEFIREGD------NNYSLSNASARYIFQD  321 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-----------------CEEECBCS------STTSBSSSCEEEEEEC
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeecc--------ccccccCCC------CCCCCCCCeEEEEEEe
Confidence            35699999988876 55566645677888654211100000        000000000      0001134579999998


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEee---------cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          431 PLGDFILSSSADTTIRLWSTKLNANLVCYK---------GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~---------~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      ++|. |..|+.++-|..|+..+........         .....|.++...++|. +..|+.++-+..|+..+.......
T Consensus       322 ~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~  399 (781)
T 3v9f_A          322 SFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNK  399 (781)
T ss_dssp             SSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-
T ss_pred             CCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEcc
Confidence            8886 5567766778999887554322110         1235689999887776 667776677889998654222111


Q ss_pred             ---ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          502 ---AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       502 ---~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                         ......|.++...+++. |.+|+.++.+..+|..+++......  .....|.++...++|.+.+ |+. +-|.+||.
T Consensus       400 ~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~  476 (781)
T 3v9f_A          400 ENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDL  476 (781)
T ss_dssp             ----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEES
T ss_pred             CCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeC
Confidence               12335688888877765 5557777789999988776543221  1346799999988887544 555 45889998


Q ss_pred             CCCeeeeeecCC-----CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEe
Q 005277          577 ASGRCVTPLMGH-----TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD  651 (704)
Q Consensus       577 ~~~~~~~~~~~h-----~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd  651 (704)
                      .+++........     ...|.++..                                  .++|.+.+ |+.++-|..||
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~i~~i~~----------------------------------d~~g~lWi-gt~~~Gl~~~~  521 (781)
T 3v9f_A          477 ASKKVIHHYDTSNSQLLENFVRSIAQ----------------------------------DSEGRFWI-GTFGGGVGIYT  521 (781)
T ss_dssp             SSSSCCEEECTTTSSCSCSCEEEEEE----------------------------------CTTCCEEE-EESSSCEEEEC
T ss_pred             CCCeEEecccCcccccccceeEEEEE----------------------------------cCCCCEEE-EEcCCCEEEEe
Confidence            776543322111     234555544                                  67776555 44434477788


Q ss_pred             CCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEE
Q 005277          652 VTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA  697 (704)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~  697 (704)
                      ..+.... ....         -..  -....|.++...++|.+.++
T Consensus       522 ~~~~~~~-~~~~---------~~~--l~~~~i~~i~~d~~g~lWi~  555 (781)
T 3v9f_A          522 PDMQLVR-KFNQ---------YEG--FCSNTINQIYRSSKGQMWLA  555 (781)
T ss_dssp             TTCCEEE-EECT---------TTT--CSCSCEEEEEECTTSCEEEE
T ss_pred             CCCCeEE-EccC---------CCC--CCCCeeEEEEECCCCCEEEE
Confidence            7654321 0000         001  12456888988888876654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.34  E-value=0.00037  Score=81.48  Aligned_cols=275  Identities=12%  Similarity=0.061  Sum_probs=161.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      ...|.++...++|. |..|+.++-|..|+............               +..  .  ....-....|.++...
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~---------------~~~--~--~~~~l~~~~v~~i~~d  371 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYS---------------PTQ--M--NESSLSNKVVSSVCDD  371 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC-------------------C--C--CSSCCSSSCEEEEEEC
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccC---------------ccc--c--ccCCCCCcceEEEEEc
Confidence            35699999998887 56677777788887653211100000               000  0  0000123568999988


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEe---ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--cCC
Q 005277          431 PLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHL  505 (704)
Q Consensus       431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~--~~~  505 (704)
                      +++. |..|+.++-|..|+..++......   ......|.++...++|. +..|+.++-+..++..+++......  ...
T Consensus       372 ~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~  449 (781)
T 3v9f_A          372 GQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNEL  449 (781)
T ss_dssp             TTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCC
T ss_pred             CCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCC
Confidence            8776 556665666888987654322111   12345789999887776 5557777789999887664332221  134


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC-----CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-----~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      ..|.++...+++. |..|+. +.|..||..+++........     ...|.++...++|++.+ |+.++-|..||..+++
T Consensus       450 ~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          450 LDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             CCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE
T ss_pred             CeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe
Confidence            5788888877765 555666 56899998877654433222     35799999999888655 4443347779987664


Q ss_pred             eeeeecC-C---CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          581 CVTPLMG-H---TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       581 ~~~~~~~-h---~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                      .. .+.. +   ...|.++..                                  .++|.+.++. .+|.|..||..++.
T Consensus       527 ~~-~~~~~~~l~~~~i~~i~~----------------------------------d~~g~lWi~T-~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          527 VR-KFNQYEGFCSNTINQIYR----------------------------------SSKGQMWLAT-GEGLVCFPSARNFD  570 (781)
T ss_dssp             EE-EECTTTTCSCSCEEEEEE----------------------------------CTTSCEEEEE-TTEEEEESCTTTCC
T ss_pred             EE-EccCCCCCCCCeeEEEEE----------------------------------CCCCCEEEEE-CCCceEEECCCCCc
Confidence            33 2321 1   234555544                                  6777755544 46665888876653


Q ss_pred             cccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEe
Q 005277          657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG  698 (704)
Q Consensus       657 ~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~g  698 (704)
                      .. .....         .-+  ....|.++...++|.+.+++
T Consensus       571 ~~-~~~~~---------~gl--~~~~i~~i~~d~~g~lW~~t  600 (781)
T 3v9f_A          571 YQ-VFQRK---------EGL--PNTHIRAISEDKNGNIWAST  600 (781)
T ss_dssp             CE-EECGG---------GTC--SCCCCCEEEECSSSCEEEEC
T ss_pred             EE-Ecccc---------CCC--CCceEEEEEECCCCCEEEEc
Confidence            21 00000         011  12346677777777655543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.33  E-value=0.00014  Score=81.73  Aligned_cols=104  Identities=8%  Similarity=-0.079  Sum_probs=70.3

Q ss_pred             CCeEEEEeCCCCceeEEeecCCcC----------------------------------------e-eEEEEcCCCCEEEE
Q 005277          442 DTTIRLWSTKLNANLVCYKGHNYP----------------------------------------V-WDVQFNPQGHYFAS  480 (704)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~~~----------------------------------------V-~~v~~sp~~~~l~s  480 (704)
                      +|.|..+|..+++.+.........                                        + ..+++.|....++.
T Consensus       183 ~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv  262 (582)
T 1flg_A          183 VGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIV  262 (582)
T ss_dssp             BCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEE
T ss_pred             CCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEE
Confidence            789999999999887765421100                                        0 13456666677776


Q ss_pred             EeC--------------------C----CeEEEEECCCCceeEEecc--CCC----Cee-EEEEc---CCC---CEEEEE
Q 005277          481 SSH--------------------D----RTARIWSMDRIQPLRIMAG--HLS----DVD-CVRWH---INC---NYIATG  523 (704)
Q Consensus       481 gs~--------------------d----g~i~lwd~~~~~~~~~~~~--~~~----~V~-~v~~~---p~~---~~l~tg  523 (704)
                      ++.                    |    +.|..+|.++++.+..+..  |..    .+. -+.+.   .+|   ..++.+
T Consensus       263 ~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~  342 (582)
T 1flg_A          263 GAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHA  342 (582)
T ss_dssp             EECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEE
T ss_pred             eCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEE
Confidence            653                    2    6899999999999887753  211    111 12222   466   378889


Q ss_pred             ECCCcEEEEeCCCCcEEEEeec
Q 005277          524 SSDKTVRLWDVSSGECVRIFIG  545 (704)
Q Consensus       524 s~dg~I~iwd~~~~~~~~~~~~  545 (704)
                      +.+|.++++|..+|+.+..+..
T Consensus       343 ~~~G~l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          343 DRNGFFYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             CTTSEEEEEETTTCCEEEEEES
T ss_pred             CCCceEEEEECCCCCEeccccc
Confidence            9999999999999998876543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.33  E-value=0.00049  Score=73.21  Aligned_cols=158  Identities=10%  Similarity=-0.038  Sum_probs=106.7

Q ss_pred             cCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeE
Q 005277          422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      ..+.+++|.+.+..|+ +-...+.|..+++........+.........+++.+. +.++++-...+.|.+.+++......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            4578999998666555 5556788999999866544433333334568899874 5555666667889999987655444


Q ss_pred             EeccCCCCeeEEEEcCCCCEEEEEEC-C-CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEeC
Q 005277          500 IMAGHLSDVDCVRWHINCNYIATGSS-D-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDL  576 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~-d-g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iwdl  576 (704)
                      .+.........++++|.+..|+.... . +.|..+++............-.....|+|+|++..|+.+ ...+.|..+|+
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~  275 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  275 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            44445567789999997766665543 3 678888876443333333334467899999876666555 45678999997


Q ss_pred             CCC
Q 005277          577 ASG  579 (704)
Q Consensus       577 ~~~  579 (704)
                      ...
T Consensus       276 dG~  278 (386)
T 3v65_B          276 DGS  278 (386)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.31  E-value=7.1e-05  Score=74.02  Aligned_cols=185  Identities=9%  Similarity=0.023  Sum_probs=124.0

Q ss_pred             eCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          349 NTHNG--LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       349 ~~~~~--V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      .|...  ...+.|+ ++.+..+.+.+|.|+++|+.+.....                         ..  +... ----.
T Consensus        50 phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~-------------------------~~--l~~~-~FgeG  100 (268)
T 3nok_A           50 PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVW-------------------------ME--RLGN-IFAEG  100 (268)
T ss_dssp             ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSE-------------------------EE--ECTT-CCEEE
T ss_pred             cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEe-------------------------EE--CCCC-cceeE
Confidence            44443  4678887 46777788888999999987632211                         11  1111 01123


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC-
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL-  505 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~-  505 (704)
                      +++.. ++..+..-.++.+.+||..+.+.+.++... ..-+.+++  ++..++.+..++.|.++|..+.+.+..+.-.. 
T Consensus       101 it~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~  176 (268)
T 3nok_A          101 LASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGLCY--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR  176 (268)
T ss_dssp             EEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCEEE--ETTEEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred             EEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEEec--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC
Confidence            44442 233334556889999999999999888743 33356664  67777777779999999999998887765322 


Q ss_pred             ----CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC-------------CCCEEEEEEecCCCEEEEEeC
Q 005277          506 ----SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-------------RSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       506 ----~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-------------~~~i~~l~~spdg~~l~sg~~  567 (704)
                          ..++.+.|. +|...+....+..|.+.|..+|+.+..+.-.             ..-.+.|+++|+++.|++.+.
T Consensus       177 g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          177 GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence                234567776 6754444446889999999999998876521             135789999998766555543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.30  E-value=3e-05  Score=90.27  Aligned_cols=153  Identities=13%  Similarity=0.131  Sum_probs=97.4

Q ss_pred             CeEEEEEc-CCCCEEEEE-eCCC----eEEEEeCCCC-ceeEE-eecCCcCeeEEEEcCCCCEEEEEeCC-----CeEEE
Q 005277          423 PVYSASFS-PLGDFILSS-SADT----TIRLWSTKLN-ANLVC-YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARI  489 (704)
Q Consensus       423 ~V~~l~~s-p~~~~l~s~-s~Dg----~I~lwd~~~~-~~~~~-~~~h~~~V~~v~~sp~~~~l~sgs~d-----g~i~l  489 (704)
                      .+...+|| |||++|+-+ +.+|    +|+++|+.++ +.+.. +.   ....++.|+|+|+.|+....+     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67889999 999988743 3333    5999999988 53211 11   124578999999888777654     36888


Q ss_pred             EECCCCce--eEEec-cCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCCC--cE-EEEee-cCCCCEEEEEEecCC
Q 005277          490 WSMDRIQP--LRIMA-GHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSG--EC-VRIFI-GHRSMILSLAMSPDG  559 (704)
Q Consensus       490 wd~~~~~~--~~~~~-~~~~~V~~v~~~p~~~~l~tgs~---dg~I~iwd~~~~--~~-~~~~~-~h~~~i~~l~~spdg  559 (704)
                      +++.++..  ...+. ........+.|+|+|++|+..+.   ...|+++|+.++  .. ++.+. .......++.|+..+
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            88877642  23333 22334567899999999887653   346888999875  23 13333 334455555555434


Q ss_pred             CEEEEEeCC----CeEEEEeCCC
Q 005277          560 RYMASGDED----GTIMMWDLAS  578 (704)
Q Consensus       560 ~~l~sg~~d----g~I~iwdl~~  578 (704)
                      .+++....+    ..|..+|+.+
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTS
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCC
Confidence            444444333    3677778765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.29  E-value=0.00045  Score=72.34  Aligned_cols=211  Identities=7%  Similarity=-0.057  Sum_probs=133.6

Q ss_pred             eeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          348 INTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       348 ~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      ......+..++|++. +.++++-...+.|..+++.....                            ............+
T Consensus        69 ~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----------------------------~~~~~~~~~~p~g  120 (349)
T 3v64_C           69 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----------------------------EEVVSTGLESPGG  120 (349)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------------------------EEEECSSCSCCCE
T ss_pred             ecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc----------------------------eEEEeCCCCCccE
Confidence            334456889999975 44555555678888888764211                            0111111233467


Q ss_pred             EEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCE-EEEEeCC-CeEEEEECCCCceeEEecc
Q 005277          427 ASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHD-RTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       427 l~~sp~~~~l-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~-l~sgs~d-g~i~lwd~~~~~~~~~~~~  503 (704)
                      +++.+.+..| ++-...+.|.+.+++...........-....++++.|.+.. +++-... +.|..++++..........
T Consensus       121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~  200 (349)
T 3v64_C          121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT  200 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred             EEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence            8888755555 45566789999998855444434334456789999995554 4454444 7888888876433333333


Q ss_pred             CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277          504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~  582 (704)
                      .......++++|++..|+.+. ..+.|..+|+........+.........+++ ..+..+++-...+.|..+|..+|+.+
T Consensus       201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCcc
Confidence            345578999998776666654 5678999998654433333334456778888 35566666667788999987777666


Q ss_pred             eeecC
Q 005277          583 TPLMG  587 (704)
Q Consensus       583 ~~~~~  587 (704)
                      ..+..
T Consensus       280 ~~i~~  284 (349)
T 3v64_C          280 EIIRN  284 (349)
T ss_dssp             EEEEC
T ss_pred             EEecc
Confidence            65543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.28  E-value=0.002  Score=66.30  Aligned_cols=156  Identities=7%  Similarity=-0.068  Sum_probs=102.7

Q ss_pred             cCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCC----CceeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 005277          422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI  495 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~  495 (704)
                      ..+.+++|++.+..|+ +-...+.|..+++..    ......+...-.....+++.+. ++.+++-...+.|.+++++..
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            4578999998766555 555678999999885    2222223222234578999874 455556567889999999865


Q ss_pred             ceeEEeccCCCCeeEEEEcCCCCEEEEEECC--CcEEEEeCCCCcEEEEe-ecCCCCEEEEEEecCCCEEEEEe-CCCeE
Q 005277          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSD--KTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGD-EDGTI  571 (704)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d--g~I~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~l~sg~-~dg~I  571 (704)
                      .....+.........++++|.+..|+.+...  +.|..+++. |.....+ ...-.....++++|++..|+.+. ..+.|
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I  188 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  188 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence            4444444344667899999976666655543  688888875 3333333 23345678999999877666554 56789


Q ss_pred             EEEeCCC
Q 005277          572 MMWDLAS  578 (704)
Q Consensus       572 ~iwdl~~  578 (704)
                      ..+|+..
T Consensus       189 ~~~d~dg  195 (316)
T 1ijq_A          189 SSIDVNG  195 (316)
T ss_dssp             EEEETTS
T ss_pred             EEEecCC
Confidence            9999864

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.24  E-value=0.00054  Score=67.91  Aligned_cols=198  Identities=13%  Similarity=0.113  Sum_probs=126.2

Q ss_pred             eCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          349 NTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      +-.+.+..++|+|++. +.++...++.|...|... ...                          ....+.+ ....-+|
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-~v~--------------------------~~i~l~g-~~D~EGI   75 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-DLI--------------------------RTIPLDF-VKDLETI   75 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-CEE--------------------------EEEECSS-CSSEEEE
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-CEE--------------------------EEEecCC-CCChHHe
Confidence            4446799999999865 555566778777777652 100                          0011122 2457788


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCcee---EEee------cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC---C
Q 005277          428 SFSPLGDFILSSSADTTIRLWSTKLNANL---VCYK------GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR---I  495 (704)
Q Consensus       428 ~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~---~~~~------~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~---~  495 (704)
                      ++.+++.++++.-.++.+.++++.....+   ....      ..+...-.++|+|.++.|+++.......+|.++.   .
T Consensus        76 a~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~  155 (255)
T 3qqz_A           76 EYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS  155 (255)
T ss_dssp             EECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS
T ss_pred             EEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC
Confidence            99988887777667788999988765432   2221      1344568999999987777776655555555541   1


Q ss_pred             ceeEEec-------cCCCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCcEEEEeecCC---------CCEEEEEEecC
Q 005277          496 QPLRIMA-------GHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHR---------SMILSLAMSPD  558 (704)
Q Consensus       496 ~~~~~~~-------~~~~~V~~v~~~p~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~---------~~i~~l~~spd  558 (704)
                      ..+....       .+...+.+++++|....+ +.....+.+..+|.. |+.+..+.-..         ...-.|+|.++
T Consensus       156 ~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~  234 (255)
T 3qqz_A          156 NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS  234 (255)
T ss_dssp             SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTT
T ss_pred             CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCC
Confidence            1223221       234568899999975554 455567788889965 55665554221         26789999999


Q ss_pred             CCEEEEEeCCCeEEEEeC
Q 005277          559 GRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       559 g~~l~sg~~dg~I~iwdl  576 (704)
                      |+. +..++-+.++.+.-
T Consensus       235 G~l-yIvsE~n~~y~f~~  251 (255)
T 3qqz_A          235 GNI-YIVSEPNRFYRFTP  251 (255)
T ss_dssp             CCE-EEEETTTEEEEEEC
T ss_pred             CCE-EEEcCCceEEEEEe
Confidence            984 44577776766653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.22  E-value=0.00024  Score=76.80  Aligned_cols=151  Identities=8%  Similarity=0.015  Sum_probs=93.6

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277          354 LNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (704)
Q Consensus       354 V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (704)
                      ...++++| ++..|.+....+.|+.+++...                             .+..+.........++|+++
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-----------------------------~v~~~~~~~~~P~~ia~d~~  189 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-----------------------------YVSTVYSGLSKVRTICWTHE  189 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTT-----------------------------EEEEEECCCSCEEEEEECTT
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCC-----------------------------EEEEEecCCCCcceEEEeCC
Confidence            46788887 3444555544477888887641                             11122223355789999999


Q ss_pred             CCEEEEEeCC-C----eEEEEeCCCCcee--EEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEec-c
Q 005277          433 GDFILSSSAD-T----TIRLWSTKLNANL--VCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMA-G  503 (704)
Q Consensus       433 ~~~l~s~s~D-g----~I~lwd~~~~~~~--~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~~-~  503 (704)
                      +++|+.+... +    .+.+.+.. +...  ..+.. ......++++| +|.++++-..++.|..++.+......... +
T Consensus       190 G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~  267 (430)
T 3tc9_A          190 ADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ  267 (430)
T ss_dssp             SSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             CCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC
Confidence            9966665542 1    23334433 2221  22222 23456889999 77777766678899999998765422222 2


Q ss_pred             CCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCC
Q 005277          504 HLSDVDCVRWHINCNYIATG-SSDKTVRLWDVS  535 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~~  535 (704)
                      .......++|+|++++|+.+ ...+.|..++..
T Consensus       268 ~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            22346789999999965555 467889998765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.20  E-value=0.00037  Score=75.30  Aligned_cols=196  Identities=10%  Similarity=0.055  Sum_probs=114.7

Q ss_pred             EEEEEEcCC--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          354 LNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       354 V~~~~fs~d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      ...++|+|+  ...|..+...+.|+.++....                             .+..+.+......+++|++
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-----------------------------~v~~~~~~~~~P~giavd~  191 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-----------------------------YVDIKTTNIGQCADVNFTL  191 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTT-----------------------------EEEEECCCCSCEEEEEECT
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCC-----------------------------EEEEeecCCCCccEEEECC
Confidence            467889984  333444433388988887531                             1122222334578999999


Q ss_pred             CCCEEEEEeCC---C-eEEEEeCCCCce-eEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEe-cc-
Q 005277          432 LGDFILSSSAD---T-TIRLWSTKLNAN-LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIM-AG-  503 (704)
Q Consensus       432 ~~~~l~s~s~D---g-~I~lwd~~~~~~-~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~-~~-  503 (704)
                      +++++++....   . .+...+...+.. ...+. .......++++| +|.++++-..++.|+.++.+++.....+ .. 
T Consensus       192 dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~  270 (433)
T 4hw6_A          192 NGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD  270 (433)
T ss_dssp             TCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS
T ss_pred             CCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC
Confidence            99944444321   1 233333322211 11122 223456789999 7776666667789999999866552222 21 


Q ss_pred             CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCC--CCcE--EEEeecC---------------CCCEEEEEE--------
Q 005277          504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS--SGEC--VRIFIGH---------------RSMILSLAM--------  555 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~--~~~~--~~~~~~h---------------~~~i~~l~~--------  555 (704)
                      ....-..++|+|++++|+.+. ..+.|+.++..  ++..  ...+.+.               -.....+++        
T Consensus       271 ~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~  350 (433)
T 4hw6_A          271 TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAG  350 (433)
T ss_dssp             CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTT
T ss_pred             CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccc
Confidence            122234699999999665554 56789998865  3321  1222221               123667888        


Q ss_pred             -ecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          556 -SPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       556 -spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                       .++|.+.++-...+.|+.++. +|.
T Consensus       351 dd~~g~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          351 EEDEYDFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             SSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred             cCCCCcEEEEECCCCEEEEECC-CCC
Confidence             667777766667778888884 453

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.19  E-value=0.0007  Score=71.97  Aligned_cols=219  Identities=6%  Similarity=-0.067  Sum_probs=137.6

Q ss_pred             eCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          349 NTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       349 ~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      ........++|++. +.++++-...+.|..|++.....                            ............++
T Consensus       113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----------------------------~~~~~~~~~~p~gl  164 (386)
T 3v65_B          113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----------------------------EEVVSTGLESPGGL  164 (386)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE----------------------------EEEECSSCSCCCCE
T ss_pred             cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc----------------------------EEEEeCCCCCccEE
Confidence            34456889999975 55555556678888888764211                            01111111234677


Q ss_pred             EEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CC-CeEEEEECCCCceeEEeccC
Q 005277          428 SFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HD-RTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       428 ~~sp~~~~l-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~d-g~i~lwd~~~~~~~~~~~~~  504 (704)
                      ++.+.+..| ++-...+.|.+.+++.......+.........+++.|.+..++.+. .. +.|..++++...........
T Consensus       165 avd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~  244 (386)
T 3v65_B          165 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH  244 (386)
T ss_dssp             EEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred             EEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC
Confidence            888755555 4556677899988875544444443445678999998665554443 44 68888888765444444444


Q ss_pred             CCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeee
Q 005277          505 LSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~  583 (704)
                      ......++|+|++..|+.+. ..+.|..+|+........+.........+++ ..+..+++-...+.|..+|..+|+.+.
T Consensus       245 ~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~  323 (386)
T 3v65_B          245 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQE  323 (386)
T ss_dssp             CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceE
Confidence            45578999998766666554 5678999998654433334334456778888 455666666778899999977777666


Q ss_pred             eecCCCceeeeee
Q 005277          584 PLMGHTSCVWTLA  596 (704)
Q Consensus       584 ~~~~h~~~V~sl~  596 (704)
                      .+.........+.
T Consensus       324 ~i~~~~~~p~gi~  336 (386)
T 3v65_B          324 IIRNKLHFPMDIH  336 (386)
T ss_dssp             EEECSCSCCCCEE
T ss_pred             EEccCCCCCceEE
Confidence            6643333333343

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.18  E-value=0.0045  Score=66.02  Aligned_cols=161  Identities=7%  Similarity=-0.057  Sum_probs=109.6

Q ss_pred             CccCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCC----ceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 005277          420 HSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMD  493 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~  493 (704)
                      ....+.+++|++.+..|+ +-...+.|+.+++...    .....+.........+++.+ .++++++-...+.|.+.+++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            345688999998766665 4456788999998752    22333333345677899988 55566666678899999998


Q ss_pred             CCceeEEeccCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCe
Q 005277          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGT  570 (704)
Q Consensus       494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~  570 (704)
                      .......+.........++++|.+.+|+....  .+.|...++............-.....|+++|++..|+.+. ..+.
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~  269 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  269 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence            76655555545566889999997666666543  37899999865443333333345789999999877776664 5678


Q ss_pred             EEEEeCCCCe
Q 005277          571 IMMWDLASGR  580 (704)
Q Consensus       571 I~iwdl~~~~  580 (704)
                      |..+|+....
T Consensus       270 I~~~d~dG~~  279 (400)
T 3p5b_L          270 ISSIDVNGGN  279 (400)
T ss_dssp             EEEEETTSCC
T ss_pred             EEEEeCCCCc
Confidence            9999986543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.15  E-value=0.00054  Score=76.87  Aligned_cols=153  Identities=11%  Similarity=0.058  Sum_probs=102.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcC-eeEEEEcC--CCCEEEEEeC------CCeEEEEECCCCceeEEecc
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYP-VWDVQFNP--QGHYFASSSH------DRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~-V~~v~~sp--~~~~l~sgs~------dg~i~lwd~~~~~~~~~~~~  503 (704)
                      +..++.++.|+.+..+|..+++.+..+...... -..+.-+|  .+..+++++.      ++.|..+|..+++.+..+..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            567888889999999999999998776532200 00111112  1335555554      79999999999998876653


Q ss_pred             CCCC--------------------------------------eeEEEEcCCCCEEEEEECC----------------CcE
Q 005277          504 HLSD--------------------------------------VDCVRWHINCNYIATGSSD----------------KTV  529 (704)
Q Consensus       504 ~~~~--------------------------------------V~~v~~~p~~~~l~tgs~d----------------g~I  529 (704)
                      ....                                      ...+++.+....++.++.+                +.|
T Consensus       195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v  274 (571)
T 2ad6_A          195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence            2111                                      0235667777777776642                359


Q ss_pred             EEEeCCCCcEEEEeecC--C--------CCEEEEEEecCCC---EEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277          530 RLWDVSSGECVRIFIGH--R--------SMILSLAMSPDGR---YMASGDEDGTIMMWDLASGRCVTPLM  586 (704)
Q Consensus       530 ~iwd~~~~~~~~~~~~h--~--------~~i~~l~~spdg~---~l~sg~~dg~I~iwdl~~~~~~~~~~  586 (704)
                      ..+|..+|+.+..+...  .        .++ -+...++|+   .++.++.+|.+.++|..+|+.+....
T Consensus       275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence            99999999998877532  1        222 123335784   67788999999999999999887654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.14  E-value=0.00041  Score=77.98  Aligned_cols=148  Identities=14%  Similarity=0.126  Sum_probs=102.2

Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEeecCCc----CeeE-EEEcCCCCEEEEEe------CCCeEEEEECCCCceeEEeccC
Q 005277          436 ILSSSADTTIRLWSTKLNANLVCYKGHNY----PVWD-VQFNPQGHYFASSS------HDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       436 l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~----~V~~-v~~sp~~~~l~sgs------~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      |+.++.|+.+..+|..+++.+........    .+.+ -.+. ++ .+++++      .+|.|+.+|.++++.+..+...
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            88888999999999999999877653220    1111 0111 44 455554      3799999999999988776532


Q ss_pred             CCC-------------------------------------e-eEEEEcCCCCEEEEEECC----------------CcEE
Q 005277          505 LSD-------------------------------------V-DCVRWHINCNYIATGSSD----------------KTVR  530 (704)
Q Consensus       505 ~~~-------------------------------------V-~~v~~~p~~~~l~tgs~d----------------g~I~  530 (704)
                      ...                                     + ..+++.+....++.++.+                +.|.
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~  281 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence            211                                     0 134566777888887765                3799


Q ss_pred             EEeCCCCcEEEEeecCC----------CCEEEEEEe-cCC---CEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277          531 LWDVSSGECVRIFIGHR----------SMILSLAMS-PDG---RYMASGDEDGTIMMWDLASGRCVTPLM  586 (704)
Q Consensus       531 iwd~~~~~~~~~~~~h~----------~~i~~l~~s-pdg---~~l~sg~~dg~I~iwdl~~~~~~~~~~  586 (704)
                      -+|..+|+.+..+....          .++. +... .+|   ..++.++.+|.+.++|..+|+.+....
T Consensus       282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            99999999988776422          1221 2222 567   567889999999999999999886653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.10  E-value=0.005  Score=65.67  Aligned_cols=223  Identities=9%  Similarity=0.026  Sum_probs=139.3

Q ss_pred             eeCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          348 INTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg-~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      ......+..++|++.+ .+..+-...+.|..+++......                        ...............+
T Consensus       108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~------------------------~~~~~~~~~~~~~p~g  163 (400)
T 3p5b_L          108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------SSYDTVISRDIQAPDG  163 (400)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------------------------CCCEEEECSSCSCEEE
T ss_pred             ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC------------------------CcceEEEeCCCCCccc
Confidence            4455678999999864 45555556788888887641100                        0011111222345678


Q ss_pred             EEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-C-CCeEEEEECCCCceeEEecc
Q 005277          427 ASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-H-DRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       427 l~~sp~~~~l-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~-dg~i~lwd~~~~~~~~~~~~  503 (704)
                      +++.+.+..| ++-...+.|.+.+++.......+.........|++.|.+.+++... . .+.|...+++..........
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~  243 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  243 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC
Confidence            8888755444 4556678999999986655444544445578999999655555444 2 37888888876554444444


Q ss_pred             CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeec--CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~--h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      .......|+++|++..|+.+. ..+.|..+|+...........  .-.....+++. .+..+++-...+.|..+|..+|+
T Consensus       244 ~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          244 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  322 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCC
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCC
Confidence            446778999998877776664 467899999865433333322  23455677773 44555666677889999988887


Q ss_pred             eeeeecCCCceeeee
Q 005277          581 CVTPLMGHTSCVWTL  595 (704)
Q Consensus       581 ~~~~~~~h~~~V~sl  595 (704)
                      .+..+.........+
T Consensus       323 ~~~~i~~~~~~p~~i  337 (400)
T 3p5b_L          323 DVNLLAENLLSPEDM  337 (400)
T ss_dssp             CCEEEECSCSCEEEE
T ss_pred             ceEEEecCCCCCceE
Confidence            776665433333344

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.08  E-value=0.0062  Score=62.56  Aligned_cols=212  Identities=8%  Similarity=0.033  Sum_probs=131.3

Q ss_pred             eCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          349 NTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg-~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      ..-.....++|++++ .+.++-..++.|..+++......                        ..........-....++
T Consensus        27 ~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~------------------------~~~~~~~~~~~~~p~gl   82 (316)
T 1ijq_A           27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------SSYDTVISRDIQAPDGL   82 (316)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCCCEE
T ss_pred             cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC------------------------cccEEEEeCCCCCcCEE
Confidence            345568899999865 45555566788988887641000                        00001111112345788


Q ss_pred             EEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-C-CeEEEEECCCCceeEEeccC
Q 005277          428 SFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-D-RTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       428 ~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-d-g~i~lwd~~~~~~~~~~~~~  504 (704)
                      ++.+.+..|+ +-...+.|.+.++........+........++++.|.+..++.+.. . +.|...+++...........
T Consensus        83 avd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~  162 (316)
T 1ijq_A           83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN  162 (316)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred             EEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECC
Confidence            8887555554 5567789999998854443334433456789999996555544443 3 68888888654333333334


Q ss_pred             CCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEe-ec--CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          505 LSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIF-IG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~-~~--h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      ......++++|++..|+.+. ..+.|..+|+.... .+.+ ..  .......+++. .+..+++-...+.|..+|..+++
T Consensus       163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence            45678999998877776655 55789999986433 2333 21  23456788885 45666666678899999987887


Q ss_pred             eeeeec
Q 005277          581 CVTPLM  586 (704)
Q Consensus       581 ~~~~~~  586 (704)
                      .+..+.
T Consensus       241 ~~~~i~  246 (316)
T 1ijq_A          241 DVNLLA  246 (316)
T ss_dssp             CCEEEE
T ss_pred             ceEEEe
Confidence            666554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.08  E-value=0.0022  Score=66.03  Aligned_cols=158  Identities=7%  Similarity=-0.033  Sum_probs=105.1

Q ss_pred             cCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCce-eEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCcee
Q 005277          422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPL  498 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~  498 (704)
                      ..+.+++|.+.+..|+ +-...+.|..+++..... ...+...-.....+++.+ .+..+++-...+.|.+++++.....
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            3567899998655554 556678899999886532 122222223466889987 4555566667789999999865444


Q ss_pred             EEeccCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEe
Q 005277          499 RIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWD  575 (704)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iwd  575 (704)
                      ............++++|.+..|+.+..  .+.|...++............-.....++++|++..|+.+ +..+.|..+|
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d  194 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  194 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence            444445566789999997666666653  5788888875433222222333467899999976666655 4567899999


Q ss_pred             CCCC
Q 005277          576 LASG  579 (704)
Q Consensus       576 l~~~  579 (704)
                      +...
T Consensus       195 ~dG~  198 (318)
T 3sov_A          195 LDGT  198 (318)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            8643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.04  E-value=0.0022  Score=66.05  Aligned_cols=206  Identities=8%  Similarity=0.031  Sum_probs=130.3

Q ss_pred             CEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          353 GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       353 ~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      ....++|++. +.+..+-...+.|..+++.....                          .. ......-....++++.+
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~--------------------------~~-~~~~~~l~~p~glavd~   88 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--------------------------VQ-NVVVSGLLSPDGLACDW   88 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC--------------------------CC-EEEEECCSCCCEEEEET
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc--------------------------eE-EEEcCCCCCccEEEEEc
Confidence            4678899885 55666666678888888764210                          00 01111113456788887


Q ss_pred             CCCEE-EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeEEeccCCCCe
Q 005277          432 LGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAGHLSDV  508 (704)
Q Consensus       432 ~~~~l-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs--~dg~i~lwd~~~~~~~~~~~~~~~~V  508 (704)
                      .+..| ++-...+.|.+++++.................+++.|.+..++.+.  ..+.|...+++...............
T Consensus        89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~P  168 (318)
T 3sov_A           89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP  168 (318)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE
T ss_pred             CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCc
Confidence            55544 4556678999999885443333334445678999998655555544  35788888887544333333334556


Q ss_pred             eEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277          509 DCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (704)
Q Consensus       509 ~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~  586 (704)
                      ..++++|++..|+.+. ..+.|..+|+..........+.......+++. .+..+++-...+.|..+|..+|+....+.
T Consensus       169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            8999999766666554 56789999986433332333344567788886 34555566677899999988887665554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.01  E-value=0.00081  Score=72.58  Aligned_cols=153  Identities=12%  Similarity=0.091  Sum_probs=99.8

Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CC----eEEEEECCCCc
Q 005277          423 PVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR----TARIWSMDRIQ  496 (704)
Q Consensus       423 ~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg----~i~lwd~~~~~  496 (704)
                      ....++|+| ++..|+.+...+.|+.+|+..+.... +.........|+|+++|++++++.. ++    .+..++.+...
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            457889998 45667666655889999998655433 3334456789999999996666654 22    23334432211


Q ss_pred             -eeEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEecCCCEEEE-EeCCCeEE
Q 005277          497 -PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMAS-GDEDGTIM  572 (704)
Q Consensus       497 -~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg~~l~s-g~~dg~I~  572 (704)
                       ....+. .......++++| ++.++++-..++.|+.++..++....... +.......++|+|+|++|+. -...+.|.
T Consensus       217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence             112222 234467888999 67766666678899999998766533322 22245789999999995554 45678899


Q ss_pred             EEeCC
Q 005277          573 MWDLA  577 (704)
Q Consensus       573 iwdl~  577 (704)
                      .++..
T Consensus       296 ~~~~d  300 (430)
T 3tc9_A          296 RSDYD  300 (430)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            98765

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.94  E-value=0.00011  Score=84.21  Aligned_cols=115  Identities=10%  Similarity=0.111  Sum_probs=75.8

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------eEEEEeCCCCce--eEEeec-CCcCeeEEEEcCCCCEEEEEe-CCCeEEE
Q 005277          426 SASFSP-LGDFILSSSADT-----------TIRLWSTKLNAN--LVCYKG-HNYPVWDVQFNPQGHYFASSS-HDRTARI  489 (704)
Q Consensus       426 ~l~~sp-~~~~l~s~s~Dg-----------~I~lwd~~~~~~--~~~~~~-h~~~V~~v~~sp~~~~l~sgs-~dg~i~l  489 (704)
                      ++++.+ +++.++.|+.+.           .+.+||..+++-  +..+.. +.....++++..+++.+++|+ .++.+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556667 788888876543           588999887653  233322 333344578888999999998 4568999


Q ss_pred             EECCCCceeEEeccCCC-CeeEEEEcCCCCEEEEEE-CC-----CcEEEEeCCCCcEE
Q 005277          490 WSMDRIQPLRIMAGHLS-DVDCVRWHINCNYIATGS-SD-----KTVRLWDVSSGECV  540 (704)
Q Consensus       490 wd~~~~~~~~~~~~~~~-~V~~v~~~p~~~~l~tgs-~d-----g~I~iwd~~~~~~~  540 (704)
                      ||..+.+-...-..+.. .-.+++..+++++++.|+ .+     ..+.+||..++.-.
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence            99877543332111211 123455667999999988 34     56999999887643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.92  E-value=0.0038  Score=70.02  Aligned_cols=154  Identities=16%  Similarity=0.137  Sum_probs=103.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeecCCc----CeeE--EEEcC--CCC-EEEEEe------CCCeEEEEECCCCce
Q 005277          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNY----PVWD--VQFNP--QGH-YFASSS------HDRTARIWSMDRIQP  497 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~----~V~~--v~~sp--~~~-~l~sgs------~dg~i~lwd~~~~~~  497 (704)
                      +..++.++.|+.|..+|..+++.+..+.....    .+.+  +....  +|+ .+++++      .++.|..+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            56688888999999999999999877654321    1111  11111  233 566654      378999999999988


Q ss_pred             eEEeccCCCC-----------------------------------------eeEEEEcCCCCEEEEEEC-----------
Q 005277          498 LRIMAGHLSD-----------------------------------------VDCVRWHINCNYIATGSS-----------  525 (704)
Q Consensus       498 ~~~~~~~~~~-----------------------------------------V~~v~~~p~~~~l~tgs~-----------  525 (704)
                      +.........                                         -..+++.|....+++++.           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            7655321100                                         023566677778887763           


Q ss_pred             ---------C----CcEEEEeCCCCcEEEEeec--CC--------CCEEEEEEe-cCCC---EEEEEeCCCeEEEEeCCC
Q 005277          526 ---------D----KTVRLWDVSSGECVRIFIG--HR--------SMILSLAMS-PDGR---YMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       526 ---------d----g~I~iwd~~~~~~~~~~~~--h~--------~~i~~l~~s-pdg~---~l~sg~~dg~I~iwdl~~  578 (704)
                               |    +.|.-+|..+|+.+..+..  |.        .++. +... .+|+   .++.++.+|.++++|..+
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence                     2    5899999999999988753  32        1221 2222 4674   788899999999999999


Q ss_pred             CeeeeeecC
Q 005277          579 GRCVTPLMG  587 (704)
Q Consensus       579 ~~~~~~~~~  587 (704)
                      |+.+.....
T Consensus       356 G~~lw~~~~  364 (582)
T 1flg_A          356 GKLQNAFPF  364 (582)
T ss_dssp             CCEEEEEES
T ss_pred             CCEeccccc
Confidence            998876653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.82  E-value=0.0091  Score=61.65  Aligned_cols=169  Identities=12%  Similarity=0.109  Sum_probs=95.6

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEEC--CCCcee
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM--DRIQPL  498 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~--~~~~~~  498 (704)
                      +.++.+.+.+++..++.+ .+|.|.. ..+.++.-.. ..++...+..+.+.+++.+++++...+..+-+|-  .+.+.+
T Consensus       122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~  199 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH  199 (327)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE
T ss_pred             CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC
Confidence            456778877767655554 4554422 2232332222 2345567899999999988877655444444443  222232


Q ss_pred             EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-c---CCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-G---HRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (704)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~---h~~~i~~l~~spdg~~l~sg~~dg~I~iw  574 (704)
                        -......+..+.+.+++..++ ++.+|.+++.+...|+.-..+. +   +...+.++++.+++..++++. +|.| ++
T Consensus       200 --~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~  274 (327)
T 2xbg_A          200 --NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LC  274 (327)
T ss_dssp             --ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EE
T ss_pred             --CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EE
Confidence              234456788899999887654 4567888776433343322222 1   223588999998887766654 6666 34


Q ss_pred             eCCCCeeeeeec---CCCceeeeeee
Q 005277          575 DLASGRCVTPLM---GHTSCVWTLAY  597 (704)
Q Consensus       575 dl~~~~~~~~~~---~h~~~V~sl~~  597 (704)
                      ....|+.-..+.   .+...+.++.|
T Consensus       275 S~DgG~tW~~~~~~~~~~~~~~~v~~  300 (327)
T 2xbg_A          275 SQDGGQTWQQDVDVKKVPSNFYKILF  300 (327)
T ss_dssp             ESSTTSSCEECGGGTTSSSCCCEEEE
T ss_pred             eCCCCcccEEcCccCCCCCCeEEEEE
Confidence            444443322222   22345566655

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.81  E-value=0.0044  Score=63.26  Aligned_cols=154  Identities=8%  Similarity=0.088  Sum_probs=108.6

Q ss_pred             eEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEeecC-------CcCeeEEEE---cCCCCEEEEEe----------
Q 005277          424 VYSASFSPLGDFILSSS-ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQF---NPQGHYFASSS----------  482 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s-~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~v~~---sp~~~~l~sgs----------  482 (704)
                      -.++.|.+....++.++ ..++|..|+...+.........       ...+..|.|   .|+++++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            34688987655555555 7899999999855443332221       113679999   68888877644          


Q ss_pred             ---CCCeEEEEECC---CCceeEEec--c-----------CCCCeeEEEEcCCCCEEEEEECC-CcEEEEeCCCCcEEEE
Q 005277          483 ---HDRTARIWSMD---RIQPLRIMA--G-----------HLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRI  542 (704)
Q Consensus       483 ---~dg~i~lwd~~---~~~~~~~~~--~-----------~~~~V~~v~~~p~~~~l~tgs~d-g~I~iwd~~~~~~~~~  542 (704)
                         .++.+..+|+.   +++.+....  .           -......++..++|+..++++.. +.|..++.... .+..
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~  173 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVST  173 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence               26789999999   777765543  1           11247789999999999999888 88888886533 3332


Q ss_pred             ee-c-----CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          543 FI-G-----HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       543 ~~-~-----h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                      +. .     .....+.|+++|+|+.|++....|.|..+|+.+
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            21 1     122467999999999999887799999999874

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.78  E-value=0.0064  Score=66.06  Aligned_cols=200  Identities=8%  Similarity=0.013  Sum_probs=112.3

Q ss_pred             CEEEEEEcCC--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE-
Q 005277          353 GLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF-  429 (704)
Q Consensus       353 ~V~~~~fs~d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-  429 (704)
                      ....++|+|.  ++++++-...+.|++.|+.........                         ..-.........++| 
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~-------------------------~~~~~~~~~p~~ia~~  194 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPL-------------------------NINTIPTNRIRSIAFN  194 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEE-------------------------CCTTSSCSBEEEEEEC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEE-------------------------ccCccccCCCcEEEEe
Confidence            3578899983  555555544566888887642111000                         000011235789999 


Q ss_pred             ------cCCCCEEEEEeCCC-------eEEEEeCCC-Ccee-----EEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEE
Q 005277          430 ------SPLGDFILSSSADT-------TIRLWSTKL-NANL-----VCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARI  489 (704)
Q Consensus       430 ------sp~~~~l~s~s~Dg-------~I~lwd~~~-~~~~-----~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~l  489 (704)
                            ++++++|+.+...+       .|.+.+... +...     ..+.... ....++++| ++.++++-..++.|..
T Consensus       195 ~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r  273 (496)
T 3kya_A          195 KKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFR  273 (496)
T ss_dssp             CCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred             ecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEE
Confidence                  99999777665543       266665443 1211     1222222 345788999 5565666668888999


Q ss_pred             EECC-------CCce-----------e-EEec-cCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeC--CCCcE--EEEee
Q 005277          490 WSMD-------RIQP-----------L-RIMA-GHLSDVDCVRWHINCNYIATG-SSDKTVRLWDV--SSGEC--VRIFI  544 (704)
Q Consensus       490 wd~~-------~~~~-----------~-~~~~-~~~~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~--~~~~~--~~~~~  544 (704)
                      +|++       ++..           . ..+. +.......++|+|++++|+.+ +..+.|+.+|.  .++..  ...+.
T Consensus       274 ~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~a  353 (496)
T 3kya_A          274 LDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFV  353 (496)
T ss_dssp             ECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEE
T ss_pred             EecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEec
Confidence            9987       4432           1 1122 223445789999999965555 45678888665  33322  12332


Q ss_pred             cC---C------------CCEE-EEEEe-------cCCCEEEEEeCCCeEEEEeCCCC
Q 005277          545 GH---R------------SMIL-SLAMS-------PDGRYMASGDEDGTIMMWDLASG  579 (704)
Q Consensus       545 ~h---~------------~~i~-~l~~s-------pdg~~l~sg~~dg~I~iwdl~~~  579 (704)
                      +.   .            .... .++..       ++|.++++=...+.|+.++ .+|
T Consensus       354 G~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G  410 (496)
T 3kya_A          354 GGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG  410 (496)
T ss_dssp             EBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC
T ss_pred             CCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC
Confidence            21   1            1233 34444       4555555555667777777 344

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.76  E-value=0.018  Score=66.73  Aligned_cols=162  Identities=7%  Similarity=-0.071  Sum_probs=108.1

Q ss_pred             CccCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCC----ceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECC
Q 005277          420 HSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMD  493 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~  493 (704)
                      ....+.+|+|.+....|+ +-...+.|+.+++...    .....+.........|++.+.+ +++++-...+.|.+.+++
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            345678999998655555 5556688999998753    2233333334456789998866 555566678899999998


Q ss_pred             CCceeEEeccCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCe
Q 005277          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGT  570 (704)
Q Consensus       494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~  570 (704)
                      .......+.........|+++|...+|+....  .+.|...++........+...-.....|++++.+..|+.+. ..+.
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~  581 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  581 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence            76554444445567889999998666666543  26798888865444333433445789999998766666654 4568


Q ss_pred             EEEEeCCCCee
Q 005277          571 IMMWDLASGRC  581 (704)
Q Consensus       571 I~iwdl~~~~~  581 (704)
                      |...++.....
T Consensus       582 I~~~d~dG~~~  592 (791)
T 3m0c_C          582 ISSIDVNGGNR  592 (791)
T ss_dssp             EEEEETTSCSC
T ss_pred             EEEEecCCCce
Confidence            99999865433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.75  E-value=0.0047  Score=63.60  Aligned_cols=142  Identities=17%  Similarity=0.222  Sum_probs=98.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC----CC---E-EEEEeC--CCeEEEEECC-CCceeEE
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ----GH---Y-FASSSH--DRTARIWSMD-RIQPLRI  500 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~----~~---~-l~sgs~--dg~i~lwd~~-~~~~~~~  500 (704)
                      ...+++.....+-+.+||+ .++.+..+..  +.+..+..-|.    |.   + +++.-.  +++|++|+++ ....+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3456777777889999999 6888888764  45677766652    22   2 233334  6899999774 2224554


Q ss_pred             ecc------CC-CCeeEEEE--cCC-CC-EEEEEECCCcEEEEeCC-------CCcEEEEeecCCCCEEEEEEecCCCEE
Q 005277          501 MAG------HL-SDVDCVRW--HIN-CN-YIATGSSDKTVRLWDVS-------SGECVRIFIGHRSMILSLAMSPDGRYM  562 (704)
Q Consensus       501 ~~~------~~-~~V~~v~~--~p~-~~-~l~tgs~dg~I~iwd~~-------~~~~~~~~~~h~~~i~~l~~spdg~~l  562 (704)
                      +..      .. ..+..+|+  +|. +. ++++...+|.+..|++.       +++.++.|.. .+.+..+...+....|
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L  194 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL  194 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence            421      11 45667777  664 43 68888889999999983       3466777764 4578899999988899


Q ss_pred             EEEeCCCeEEEEeCC
Q 005277          563 ASGDEDGTIMMWDLA  577 (704)
Q Consensus       563 ~sg~~dg~I~iwdl~  577 (704)
                      +.+-++.-|..+|..
T Consensus       195 yv~eEd~GIw~~da~  209 (355)
T 3amr_A          195 YIAEEDEAIWKFSAE  209 (355)
T ss_dssp             EEEETTTEEEEEECS
T ss_pred             EEecccceEEEEeCC
Confidence            999999777777755

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.75  E-value=0.017  Score=66.91  Aligned_cols=214  Identities=9%  Similarity=0.038  Sum_probs=132.9

Q ss_pred             eeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          348 INTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       348 ~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      ......+..++|++. +.++++-...+.|+.+++......                        ......+........+
T Consensus       420 ~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~------------------------~~~~~vi~~~l~~P~G  475 (791)
T 3m0c_C          420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------SSYDTVISRDIQAPDG  475 (791)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCCCE
T ss_pred             ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC------------------------cceeEEEecCCCCcce
Confidence            344556788999885 555555556778888887641100                        0011112222345667


Q ss_pred             EEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CC-CeEEEEECCCCceeEEecc
Q 005277          427 ASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HD-RTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       427 l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~d-g~i~lwd~~~~~~~~~~~~  503 (704)
                      |++.+.+..|+ +-...+.|.+.+++.......+.........|++.|.+.+|+... .. +.|...+++.......+..
T Consensus       476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~  555 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  555 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC
Confidence            88887776555 556778999999985554444444445678999999755555444 33 6888889876655555554


Q ss_pred             CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecC--CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h--~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      .......|++.+.+..|+.+. ..+.|..+++............  -....+|++. .++++++-...+.|...|..+|+
T Consensus       556 ~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          556 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCc
Confidence            556788999998777666664 4567999998654443333322  2345567764 23444455566888888888887


Q ss_pred             eeeeec
Q 005277          581 CVTPLM  586 (704)
Q Consensus       581 ~~~~~~  586 (704)
                      .+..+.
T Consensus       635 ~~~~l~  640 (791)
T 3m0c_C          635 DVNLLA  640 (791)
T ss_dssp             CCEEEE
T ss_pred             ceEEee
Confidence            666554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.72  E-value=0.087  Score=59.35  Aligned_cols=209  Identities=9%  Similarity=0.030  Sum_probs=124.8

Q ss_pred             CCCCEEEEEEcCCCCEEE-EEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          350 THNGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~la-sg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      .-.....++|++.+..|. +=...+.|..++++....                           .......--....+++
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~---------------------------~~~v~~~~~~~P~GlA   90 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---------------------------VQNVVVSGLLSPDGLA   90 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCEEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc---------------------------eEEEEeCCCCCcCeEE
Confidence            344578899998655554 444567788888764100                           0111111224578899


Q ss_pred             EcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC--CCeEEEEECCCCceeEEeccCC
Q 005277          429 FSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQPLRIMAGHL  505 (704)
Q Consensus       429 ~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~--dg~i~lwd~~~~~~~~~~~~~~  505 (704)
                      +.+.+..|+ +-...+.|.+.+++...........-....+|++.|.+.+++....  .+.|...+++............
T Consensus        91 vD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~  170 (619)
T 3s94_A           91 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI  170 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred             EEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCC
Confidence            998666555 5566789999999855443333344455779999996555544443  4577777777554444444445


Q ss_pred             CCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277          506 SDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP  584 (704)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~  584 (704)
                      .....+++++++..|+.+. ..+.|..+|+..........+.......|++..+ ...++-...+.|...|..+++....
T Consensus       171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence            5678999998766666554 5678999998654333222212223346677544 4444444677899999888876555


Q ss_pred             ec
Q 005277          585 LM  586 (704)
Q Consensus       585 ~~  586 (704)
                      +.
T Consensus       250 i~  251 (619)
T 3s94_A          250 IH  251 (619)
T ss_dssp             CC
T ss_pred             Ee
Confidence            54

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.72  E-value=0.0079  Score=61.91  Aligned_cols=193  Identities=14%  Similarity=0.235  Sum_probs=122.0

Q ss_pred             CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC----CC---
Q 005277          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL----GD---  434 (704)
Q Consensus       362 dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~----~~---  434 (704)
                      ...++++....+-+.+||+..                             +....+..  +.++.+..-|+    ++   
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G-----------------------------~~l~~~~~--g~~nnVD~r~~~~l~g~~~d   87 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDG-----------------------------KMLHSYNT--GKLNNVDIRYDFPLNGKKVD   87 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTS-----------------------------CEEEEECC--SCEEEEEEEEEEEETTEEEE
T ss_pred             CccEEEEEcCCCCEEEEcCCC-----------------------------cEEEEccC--CCcccEEEecccccCCceEe
Confidence            445555555677899999954                             22222221  44555555442    22   


Q ss_pred             EEE-EEeC--CCeEEEEeCCC-CceeEEeec------CC-cCeeEEEE--cCC-CC-EEEEEeCCCeEEEEECC------
Q 005277          435 FIL-SSSA--DTTIRLWSTKL-NANLVCYKG------HN-YPVWDVQF--NPQ-GH-YFASSSHDRTARIWSMD------  493 (704)
Q Consensus       435 ~l~-s~s~--Dg~I~lwd~~~-~~~~~~~~~------h~-~~V~~v~~--sp~-~~-~l~sgs~dg~i~lwd~~------  493 (704)
                      +++ +.-.  +++|.+|+++. ...+..+..      .. ..+..+++  +|. +. ++++...+|.+..|++.      
T Consensus        88 la~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~  167 (355)
T 3amr_A           88 IAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY  167 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC
T ss_pred             EEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc
Confidence            223 3333  57999997742 223444421      11 45667888  774 43 67788888999999883      


Q ss_pred             -CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-----CCcEEEEee-cC-CCCEEEEEEe--cCCC-EE
Q 005277          494 -RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-----SGECVRIFI-GH-RSMILSLAMS--PDGR-YM  562 (704)
Q Consensus       494 -~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-----~~~~~~~~~-~h-~~~i~~l~~s--pdg~-~l  562 (704)
                       +.+.++.+.. .+.+..+...+....|+++-.+..|..+|..     +++.+..+. ++ ...+..|++-  ++|+ +|
T Consensus       168 ~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL  246 (355)
T 3amr_A          168 ISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL  246 (355)
T ss_dssp             EEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred             ccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence             2345677664 4578888889989999999999777777755     345565542 22 2368888884  4555 55


Q ss_pred             EEEe-CCCeEEEEeCC-CCeeeeeec
Q 005277          563 ASGD-EDGTIMMWDLA-SGRCVTPLM  586 (704)
Q Consensus       563 ~sg~-~dg~I~iwdl~-~~~~~~~~~  586 (704)
                      ++++ .++...+||.. +.+.+..+.
T Consensus       247 ivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          247 MASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            5555 67899999996 566666653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.70  E-value=0.011  Score=60.39  Aligned_cols=197  Identities=9%  Similarity=0.079  Sum_probs=123.3

Q ss_pred             EEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC------CccCeEE
Q 005277          354 LNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG------HSGPVYS  426 (704)
Q Consensus       354 V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~V~~  426 (704)
                      --|++|.+. +.++++....|.|..|+........                          . .+.+      ....+.+
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~--------------------------~-~~~~~s~~g~~~~~~sG   67 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN--------------------------V-VIDGASSNGDGEQQMSG   67 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE--------------------------E-CCTTTCCSSCCSEEEEE
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE--------------------------E-ecCCccccCCCcceeeE
Confidence            457889875 4444444479999999976321110                          0 1111      0113579


Q ss_pred             EEE---cCCCCEEEEEe-------------CCCeEEEEeCC---CCceeEEeec-------------CCcCeeEEEEcCC
Q 005277          427 ASF---SPLGDFILSSS-------------ADTTIRLWSTK---LNANLVCYKG-------------HNYPVWDVQFNPQ  474 (704)
Q Consensus       427 l~~---sp~~~~l~s~s-------------~Dg~I~lwd~~---~~~~~~~~~~-------------h~~~V~~v~~sp~  474 (704)
                      |.|   .|+++++++..             .+..|..+|+.   +++.+....-             -.....+++..++
T Consensus        68 l~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~  147 (334)
T 2p9w_A           68 LSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD  147 (334)
T ss_dssp             EEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT
T ss_pred             EEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC
Confidence            999   58877766543             26779999999   7777655441             1124789999999


Q ss_pred             CCEEEEEeCC-CeEEEEECCCCceeEEec------cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE--EEEee-
Q 005277          475 GHYFASSSHD-RTARIWSMDRIQPLRIMA------GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC--VRIFI-  544 (704)
Q Consensus       475 ~~~l~sgs~d-g~i~lwd~~~~~~~~~~~------~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~--~~~~~-  544 (704)
                      |+..++++.. +.|...+.+.. .+..+.      ......+.|+++|+++.|++....|.+..+|+.+...  +..-. 
T Consensus       148 GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~  226 (334)
T 2p9w_A          148 GNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKIN  226 (334)
T ss_dssp             SCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEES
T ss_pred             CCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeeccccc
Confidence            9999999988 88777777654 222221      1122367999999999998887799999999884332  22110 


Q ss_pred             cC---CCCEEEE-EEecCCCE-EEEEeCCCeEEEEeCCC
Q 005277          545 GH---RSMILSL-AMSPDGRY-MASGDEDGTIMMWDLAS  578 (704)
Q Consensus       545 ~h---~~~i~~l-~~spdg~~-l~sg~~dg~I~iwdl~~  578 (704)
                      +.   -.....| ..-.+|+. |++....+.+.+.+...
T Consensus       227 G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          227 GDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             SCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             CCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence            21   1223443 33347777 44555566666665444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.58  E-value=0.00082  Score=77.27  Aligned_cols=158  Identities=6%  Similarity=-0.059  Sum_probs=98.0

Q ss_pred             cCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCC----CceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 005277          422 GPVYSASFSPLGDFILSS-SADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI  495 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~-s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~  495 (704)
                      ..+.+++|.+.+..|+.+ ...+.|+.+++..    ......+.........|++.+ .++++++-...+.|.+++++..
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            346688999877766654 4567899999875    222222221222345788875 4555555566789999998865


Q ss_pred             ceeEEeccCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEE-EEeCCCeEE
Q 005277          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA-SGDEDGTIM  572 (704)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~-sg~~dg~I~  572 (704)
                      .....+.........++++|.+.+|+.+..  .+.|..+++............-.....|+|+|++..|+ +-...+.|.
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            544444434456688999997665555442  26788887753322222222234567899999765554 445667899


Q ss_pred             EEeCCCC
Q 005277          573 MWDLASG  579 (704)
Q Consensus       573 iwdl~~~  579 (704)
                      .+|+...
T Consensus       566 ~~d~dG~  572 (699)
T 1n7d_A          566 SIDVNGG  572 (699)
T ss_dssp             EECSSSS
T ss_pred             EEccCCC
Confidence            9998643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.56  E-value=0.044  Score=61.79  Aligned_cols=159  Identities=7%  Similarity=-0.042  Sum_probs=103.6

Q ss_pred             cCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCce-eEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCCcee
Q 005277          422 GPVYSASFSPLGDFILSS-SADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPL  498 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~-s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~~~~  498 (704)
                      ..+.+++|++.+..|+.+ ...+.|..++++.... ...+...-.....+++.+. ++++++-...+.|.+.+++.....
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~  119 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  119 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence            457899999977766644 4567899999875532 2233333356789999985 455556567789999999875544


Q ss_pred             EEeccCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEe
Q 005277          499 RIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWD  575 (704)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iwd  575 (704)
                      ............|+++|.+.+|+....  .+.|...++............-.....|++++++..|+.+ ...+.|...|
T Consensus       120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~  199 (619)
T 3s94_A          120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  199 (619)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEES
T ss_pred             EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEec
Confidence            444345566789999997666666553  4567777765433333333344568999999976666555 4567888888


Q ss_pred             CCCCe
Q 005277          576 LASGR  580 (704)
Q Consensus       576 l~~~~  580 (704)
                      +....
T Consensus       200 ~dG~~  204 (619)
T 3s94_A          200 LDGTN  204 (619)
T ss_dssp             SSCCE
T ss_pred             CCCCc
Confidence            86543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.56  E-value=0.026  Score=58.82  Aligned_cols=199  Identities=9%  Similarity=0.117  Sum_probs=103.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      .-..-..++|.|||+++++ ..+|.|.+++ .. .......                       .............|+|
T Consensus        29 ~l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g-~~~~~~~-----------------------~~v~~~g~~~p~gia~   82 (352)
T 2ism_A           29 GLEVPWALAFLPDGGMLIA-ERPGRIRLFR-EG-RLSTYAE-----------------------LSVYHRGESGLLGLAL   82 (352)
T ss_dssp             CCSCEEEEEECTTSCEEEE-ETTTEEEEEE-TT-EEEEEEE-----------------------CCCCCSTTCSEEEEEE
T ss_pred             CCCCceEEEEcCCCeEEEE-eCCCeEEEEE-CC-CccEeec-----------------------ceEeecCCCCceeEEE
Confidence            3445789999999996555 5679999988 32 1100000                       0011112345789999


Q ss_pred             cCC---CCEEEEEeC-C-----CeEEEEeCCCCc-----eeE-Eee---cCCcCeeEEEEcCCCCEEEEEeC--------
Q 005277          430 SPL---GDFILSSSA-D-----TTIRLWSTKLNA-----NLV-CYK---GHNYPVWDVQFNPQGHYFASSSH--------  483 (704)
Q Consensus       430 sp~---~~~l~s~s~-D-----g~I~lwd~~~~~-----~~~-~~~---~h~~~V~~v~~sp~~~~l~sgs~--------  483 (704)
                      +|+   +..|+.+.. .     +.|..|+...+.     .+. .+.   +.......++|.|+|.++++.+.        
T Consensus        83 ~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~  162 (352)
T 2ism_A           83 HPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQ  162 (352)
T ss_dssp             CTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGG
T ss_pred             CCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCcccc
Confidence            998   555554433 2     568788876431     111 122   11123468999999976666432        


Q ss_pred             -----CCeEEEEECCCC------------ceeEEe-ccCCCCeeEEEEcC-CCCEEEEEECCCcE------EEEeCCCCc
Q 005277          484 -----DRTARIWSMDRI------------QPLRIM-AGHLSDVDCVRWHI-NCNYIATGSSDKTV------RLWDVSSGE  538 (704)
Q Consensus       484 -----dg~i~lwd~~~~------------~~~~~~-~~~~~~V~~v~~~p-~~~~l~tgs~dg~I------~iwd~~~~~  538 (704)
                           .|.|.-++.+..            .....+ .++ .....++|+| ++.++++-.....+      .+.-+..+.
T Consensus       163 d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~  241 (352)
T 2ism_A          163 DLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGG  241 (352)
T ss_dssp             CTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTC
T ss_pred             CCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCC
Confidence                 245666665531            011112 222 3456789999 56655553333321      122222221


Q ss_pred             ------------------EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277          539 ------------------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       539 ------------------~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~  577 (704)
                                        ++..+ .+......++| .+|..+++....+.|...++.
T Consensus       242 nyGwp~~~g~~~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~  296 (352)
T 2ism_A          242 NYGWPRVVGRGNDPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLE  296 (352)
T ss_dssp             BCCTTTCCSCCCCTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCcccCCCCCCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEEC
Confidence                              22223 22234566777 356665555555666666554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.53  E-value=0.066  Score=60.42  Aligned_cols=158  Identities=8%  Similarity=-0.056  Sum_probs=107.5

Q ss_pred             cCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeE
Q 005277          422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      ..+.+++|++.+..|+ +-..++.|..++++.......+.........+++.+. ++.+++-...+.|.+.+++......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            4578999999776666 5556789999998855443333333345678999875 4455665667899999997655444


Q ss_pred             EeccCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeC
Q 005277          500 IMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDL  576 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl  576 (704)
                      ...........++++|...+|+....  .+.|...++....... +...-.....|+++++++.|+.+. ..+.|..+|+
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~-l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT-LVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE-EECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            44345566789999996656666542  5678888876444333 333456788999999877666654 5678999998


Q ss_pred             CCCe
Q 005277          577 ASGR  580 (704)
Q Consensus       577 ~~~~  580 (704)
                      ....
T Consensus       196 dG~~  199 (628)
T 4a0p_A          196 LGLN  199 (628)
T ss_dssp             TSCS
T ss_pred             CCCc
Confidence            6543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.50  E-value=0.0096  Score=60.35  Aligned_cols=135  Identities=9%  Similarity=0.031  Sum_probs=69.3

Q ss_pred             CeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc---eeEEec--cCCCCeeE
Q 005277          443 TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQ---PLRIMA--GHLSDVDC  510 (704)
Q Consensus       443 g~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~d-----g~i~lwd~~~~~---~~~~~~--~~~~~V~~  510 (704)
                      ..+.+||..+.+-...  +.........+.  -++..++.|+.+     ..+.+||..+.+   -...-.  .......+
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~  108 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA  108 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence            3578888876542221  111111111222  257777777754     468899988765   322211  11111122


Q ss_pred             EEEcCCCCEEEEEECC-----CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCe
Q 005277          511 VRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-----GTIMMWDLASGR  580 (704)
Q Consensus       511 v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d-----g~I~iwdl~~~~  580 (704)
                      +.  .++.+++.|+.+     ..+.+||+.+++-...-..........+..-+++.++.|+.+     ..+.+||+.+.+
T Consensus       109 ~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~  186 (301)
T 2vpj_A          109 TT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGH  186 (301)
T ss_dssp             EE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             EE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCc
Confidence            22  256677777643     358899988765433221111111111122267777777754     457888887664


Q ss_pred             e
Q 005277          581 C  581 (704)
Q Consensus       581 ~  581 (704)
                      -
T Consensus       187 W  187 (301)
T 2vpj_A          187 W  187 (301)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.49  E-value=0.014  Score=62.83  Aligned_cols=153  Identities=10%  Similarity=0.101  Sum_probs=96.7

Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEe-ecC-CcCeeEEEEcCCCCEEEEE-eCCCeEEEEECCC--Cc
Q 005277          423 PVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCY-KGH-NYPVWDVQFNPQGHYFASS-SHDRTARIWSMDR--IQ  496 (704)
Q Consensus       423 ~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~-~~h-~~~V~~v~~sp~~~~l~sg-s~dg~i~lwd~~~--~~  496 (704)
                      ....++++| ++.+.++-..++.|+.++..++.....+ ... ...-..++|+|++++|+.+ ...+.|+.++.+.  +.
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~  308 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK  308 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc
Confidence            346688899 6665556667788999999877652222 211 1223469999999855544 5668899988753  21


Q ss_pred             e--eEEeccC---------------CCCeeEEEE---------cCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC---
Q 005277          497 P--LRIMAGH---------------LSDVDCVRW---------HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR---  547 (704)
Q Consensus       497 ~--~~~~~~~---------------~~~V~~v~~---------~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~---  547 (704)
                      .  ...+.+.               ......+++         .+++++.++-...+.|+.++. +|... .+.+..   
T Consensus       309 ~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~  386 (433)
T 4hw6_A          309 LAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSR  386 (433)
T ss_dssp             BCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTC
T ss_pred             cCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCC
Confidence            1  1222221               123556888         677777777667788999985 56433 333221   


Q ss_pred             ---------------CCEEEEEEe-cCCCEEEEEeCCCeEEEEeCC
Q 005277          548 ---------------SMILSLAMS-PDGRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       548 ---------------~~i~~l~~s-pdg~~l~sg~~dg~I~iwdl~  577 (704)
                                     .....|+++ ++|.++++=...+.|+.+++.
T Consensus       387 ~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          387 EWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             SSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence                           236789999 567666666667788887753

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.48  E-value=0.094  Score=54.61  Aligned_cols=203  Identities=10%  Similarity=0.058  Sum_probs=108.4

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      +...-.....++|.|||+++++ ..+|.|++++-..  ......                       .............
T Consensus        24 va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G--~~~~~~-----------------------~~v~~~g~~g~~g   77 (354)
T 3a9g_A           24 VASDLEVPWSIAPLGGGRYLVT-ERPGRLVLISPSG--KKLVAS-----------------------FDVANVGEAGLLG   77 (354)
T ss_dssp             EECSCSCEEEEEEEETTEEEEE-ETTTEEEEECSSC--EEEEEE-----------------------CCCCCSTTCSEEE
T ss_pred             EeCCCCCCeEEEEcCCCeEEEE-eCCCEEEEEeCCC--ceEeec-----------------------cceeecCCCceee
Confidence            3333456789999999985555 5669998886321  100000                       0001112345789


Q ss_pred             EEEcCC---CCEEEEEeC----C----CeEEEEeCCCCc-----e--e-EEeec-CCcCeeEEEEcCCCCEEEEEeC---
Q 005277          427 ASFSPL---GDFILSSSA----D----TTIRLWSTKLNA-----N--L-VCYKG-HNYPVWDVQFNPQGHYFASSSH---  483 (704)
Q Consensus       427 l~~sp~---~~~l~s~s~----D----g~I~lwd~~~~~-----~--~-~~~~~-h~~~V~~v~~sp~~~~l~sgs~---  483 (704)
                      |+|+|+   +..|+.+..    +    +.|..|+.....     .  + ..+.. .......|.|.|+|.++++.+.   
T Consensus        78 ia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~  157 (354)
T 3a9g_A           78 LALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAAD  157 (354)
T ss_dssp             EEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTC
T ss_pred             EEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCC
Confidence            999998   555554432    3    567777766431     1  1 11221 1123467999999987776432   


Q ss_pred             ----------CCeEEEEECCCCc-------eeEEe-ccCCCCeeEEEEcC-CCCEEEEEECCC---cEEEEeCCCC----
Q 005277          484 ----------DRTARIWSMDRIQ-------PLRIM-AGHLSDVDCVRWHI-NCNYIATGSSDK---TVRLWDVSSG----  537 (704)
Q Consensus       484 ----------dg~i~lwd~~~~~-------~~~~~-~~~~~~V~~v~~~p-~~~~l~tgs~dg---~I~iwd~~~~----  537 (704)
                                .|.|.-++.+..-       ....+ .++ .....++|+| ++.++++-...+   .|.+..  .+    
T Consensus       158 ~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyG  234 (354)
T 3a9g_A          158 PRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYG  234 (354)
T ss_dssp             GGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCC
T ss_pred             CccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCC
Confidence                      2455555554320       01122 233 3456899999 566555432221   133322  11    


Q ss_pred             --------------cEEEEeecCCCCEEEEEEe-------cCCCEEEEEeCCCeEEEEeCCC
Q 005277          538 --------------ECVRIFIGHRSMILSLAMS-------PDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       538 --------------~~~~~~~~h~~~i~~l~~s-------pdg~~l~sg~~dg~I~iwdl~~  578 (704)
                                    .++..+.........++|.       .+|.++++....+.|...++..
T Consensus       235 wp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          235 WPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             TTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             CCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence                          1222331122457788883       4677777666667787777764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.48  E-value=0.037  Score=60.05  Aligned_cols=153  Identities=15%  Similarity=0.155  Sum_probs=95.8

Q ss_pred             CeEEEEEcCC-CCEEEEE-eCCCeEEEEeCCCCceeEEeecC---CcCeeEEEE-------cCCCCEEEEEeCCC-----
Q 005277          423 PVYSASFSPL-GDFILSS-SADTTIRLWSTKLNANLVCYKGH---NYPVWDVQF-------NPQGHYFASSSHDR-----  485 (704)
Q Consensus       423 ~V~~l~~sp~-~~~l~s~-s~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~v~~-------sp~~~~l~sgs~dg-----  485 (704)
                      ....|+|.|. +..|+.+ ...+.|++.|+..+.........   ......|+|       +++|.+++++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983 5545544 44467888998866555444321   224789999       99999666665543     


Q ss_pred             --eEEEEECCC-Ccee-----EEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCC-------CCcE----------
Q 005277          486 --TARIWSMDR-IQPL-----RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVS-------SGEC----------  539 (704)
Q Consensus       486 --~i~lwd~~~-~~~~-----~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~-------~~~~----------  539 (704)
                        .+.+++... +...     +.+.. ......++++|+ +.++++-..++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              255665333 1111     22322 224467888995 5555566677889999987       5543          


Q ss_pred             -EEE-ee-cCCCCEEEEEEecCCCEEEEE-eCCCeEEEEeC
Q 005277          540 -VRI-FI-GHRSMILSLAMSPDGRYMASG-DEDGTIMMWDL  576 (704)
Q Consensus       540 -~~~-~~-~h~~~i~~l~~spdg~~l~sg-~~dg~I~iwdl  576 (704)
                       ... +. +.......|+|+|+|++|+.+ .....|+.+|.
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence             111 21 233456899999999965554 46678888664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.46  E-value=0.0095  Score=60.39  Aligned_cols=144  Identities=8%  Similarity=0.014  Sum_probs=77.4

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCc---eeE--EeecCCcCeeEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Q 005277          432 LGDFILSSSAD-----TTIRLWSTKLNA---NLV--CYKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQ  496 (704)
Q Consensus       432 ~~~~l~s~s~D-----g~I~lwd~~~~~---~~~--~~~~h~~~V~~v~~sp~~~~l~sgs~d-----g~i~lwd~~~~~  496 (704)
                      ++..++.|+.+     ..+.+||..+..   -..  .+.........+.+  ++..++.|+.+     ..+.+||..+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            45666666654     468899988765   222  11111111122222  67777777643     368888987765


Q ss_pred             eeEEe--ccCCCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCcEEEEeecCCC--CEEEEEEecCCCEEEEEeC
Q 005277          497 PLRIM--AGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRS--MILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       497 ~~~~~--~~~~~~V~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~--~i~~l~~spdg~~l~sg~~  567 (704)
                      -...-  ........++.  -++.+++.|+.+     ..+.+||+.+++-...-.....  ...++.  -+++.++.|+.
T Consensus       140 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~  215 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGF  215 (301)
T ss_dssp             EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred             EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCC
Confidence            33322  11111112222  266777777654     4689999987754432111111  112222  26777777776


Q ss_pred             C-----CeEEEEeCCCCee
Q 005277          568 D-----GTIMMWDLASGRC  581 (704)
Q Consensus       568 d-----g~I~iwdl~~~~~  581 (704)
                      +     ..+.+||+.+.+-
T Consensus       216 ~~~~~~~~v~~yd~~~~~W  234 (301)
T 2vpj_A          216 DGTAHLSSVEAYNIRTDSW  234 (301)
T ss_dssp             CSSSBCCCEEEEETTTTEE
T ss_pred             CCCcccceEEEEeCCCCcE
Confidence            4     4688899877643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.46  E-value=0.00074  Score=77.61  Aligned_cols=211  Identities=9%  Similarity=0.036  Sum_probs=121.7

Q ss_pred             CCEEEEEEcCCCCEEEEE-eCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          352 NGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg-~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      ..+..++|++.+..|... ...+.|+.+++.......                        .....+........+|++.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~------------------------~~~~~i~~~~~~P~glavD  461 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS------------------------SYDTVISRDIQAPDGLAVD  461 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C------------------------CCCCBCCSCC--CCCEECC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc------------------------ceEEEEeCCCCCcceEEEE
Confidence            456678898865555444 456788888876410000                        0000010111224567777


Q ss_pred             CCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CC-CeEEEEECCCCceeEEeccCCCC
Q 005277          431 PLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HD-RTARIWSMDRIQPLRIMAGHLSD  507 (704)
Q Consensus       431 p~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~d-g~i~lwd~~~~~~~~~~~~~~~~  507 (704)
                      +.+. ++++-...+.|.++++........+.........|++.|.+.+|+.+. .. +.|..++++..............
T Consensus       462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~  541 (699)
T 1n7d_A          462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW  541 (699)
T ss_dssp             CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSS
T ss_pred             eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCC
Confidence            5444 444545678899999885544433333334567899999655444443 22 67888877654333333333445


Q ss_pred             eeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCcEEEEeec--CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277          508 VDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP  584 (704)
Q Consensus       508 V~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~~--h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~  584 (704)
                      ...|+|+|++..|+.+ +..+.|..+|+........+..  .......|++..+ .++++....+.|..+|..+++.+..
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~  620 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNL  620 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEE
Confidence            6789999876555544 4567899999864333222221  1223445666543 4555556678999999888887777


Q ss_pred             ecC
Q 005277          585 LMG  587 (704)
Q Consensus       585 ~~~  587 (704)
                      +..
T Consensus       621 i~~  623 (699)
T 1n7d_A          621 LAE  623 (699)
T ss_dssp             CCT
T ss_pred             eec
Confidence            654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.39  E-value=0.13  Score=57.95  Aligned_cols=203  Identities=7%  Similarity=-0.033  Sum_probs=129.2

Q ss_pred             CCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          352 NGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       352 ~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      ..+..++|++. +.+.++-..++.|..++++.....                            ...........++++.
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~----------------------------~v~~~g~~~P~GlAvD   88 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE----------------------------HVVEFGLDYPEGMAVD   88 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----------------------------EEECSSCSCCCEEEEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE----------------------------EEEeCCCCCcceEEEE
Confidence            46789999986 445555566788888887642110                            1111111345678887


Q ss_pred             CCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeEEeccCCCC
Q 005277          431 PLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAGHLSD  507 (704)
Q Consensus       431 p~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs--~dg~i~lwd~~~~~~~~~~~~~~~~  507 (704)
                      +.+..|+ +-...+.|.+.+++.......+...-....+|++.|...+|+...  ..+.|...+++......... ....
T Consensus        89 ~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~  167 (628)
T 4a0p_A           89 WLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGR  167 (628)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSS
T ss_pred             eCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCC
Confidence            7666554 555678899999875543333333344568999999544444444  25678888887655444433 4566


Q ss_pred             eeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277          508 VDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       508 V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                      ...+++++++..|+.+. ..+.|..+|+..... ..+.........+++.. +..+++-...+.|...|..+++....+
T Consensus       168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             cceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence            78999999877766664 567899999865443 34444444567888864 445555556789999998777554444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.38  E-value=0.039  Score=57.53  Aligned_cols=138  Identities=14%  Similarity=0.115  Sum_probs=78.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EEee---cCCcCeeEEEEcCC---CCEEEEEeC-C-----CeEE
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANL--VCYK---GHNYPVWDVQFNPQ---GHYFASSSH-D-----RTAR  488 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~--~~~~---~h~~~V~~v~~sp~---~~~l~sgs~-d-----g~i~  488 (704)
                      ...+++|.|+++++ .+..+|.|++++  .+...  ..+.   ........|+|+|+   +..++++.. .     +.|.
T Consensus        32 ~P~~ia~~pdG~l~-V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGML-IAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEE-EEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEE-EEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            45789999999854 455679999998  34321  1111   12346789999998   445544433 2     6788


Q ss_pred             EEECCCCc-----ee-EEec---cCCCCeeEEEEcCCCCEEEEEEC-------------CCcEEEEeCCC----------
Q 005277          489 IWSMDRIQ-----PL-RIMA---GHLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSS----------  536 (704)
Q Consensus       489 lwd~~~~~-----~~-~~~~---~~~~~V~~v~~~p~~~~l~tgs~-------------dg~I~iwd~~~----------  536 (704)
                      .|+.....     .+ ..+.   +.......++|.|+|.+.++.+.             .|.|.-++...          
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            88876431     11 1122   11123468999999976665432             14566666542          


Q ss_pred             ----CcEEEEeecCCCCEEEEEEec-CCCEEEEE
Q 005277          537 ----GECVRIFIGHRSMILSLAMSP-DGRYMASG  565 (704)
Q Consensus       537 ----~~~~~~~~~h~~~i~~l~~sp-dg~~l~sg  565 (704)
                          ...+. -.++. ....++|+| +|.++++-
T Consensus       189 ~~~~~~~i~-a~G~r-np~g~a~d~~~g~l~v~d  220 (352)
T 2ism_A          189 RRGARPEVY-SLGHR-NPQGLAWHPKTGELFSSE  220 (352)
T ss_dssp             CTTSCTTEE-EECCS-EECCCEECTTTCCEEEEE
T ss_pred             CCCCCccEE-EEcCC-CcccEEEECCCCCEEEEE
Confidence                01111 12332 356788999 66655543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.36  E-value=0.019  Score=58.23  Aligned_cols=141  Identities=8%  Similarity=-0.002  Sum_probs=73.2

Q ss_pred             EEEEEeC--CCeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCC----CeEEEEECCCCceeEEeccCCC
Q 005277          435 FILSSSA--DTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRIQPLRIMAGHLS  506 (704)
Q Consensus       435 ~l~s~s~--Dg~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~d----g~i~lwd~~~~~~~~~~~~~~~  506 (704)
                      .++.|+.  ...+.+||..+.+-...  +.........+.+  ++..++.|+.+    ..+.+||..+.+-...-.....
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            3444543  35688888876543221  1111111122222  67777787754    6788899887653332221111


Q ss_pred             --CeeEEEEcCCCCEEEEEECC------CcEEEEeCCCCcEEEEeecCCCC-EEEEEEecCCCEEEEEeC---------C
Q 005277          507 --DVDCVRWHINCNYIATGSSD------KTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGDE---------D  568 (704)
Q Consensus       507 --~V~~v~~~p~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~h~~~-i~~l~~spdg~~l~sg~~---------d  568 (704)
                        ...++.  -++.+++.|+.+      ..+.+||..+.+-...-...... -.+++. -+++.++.|+.         -
T Consensus        92 r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~  168 (306)
T 3ii7_A           92 RDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVL  168 (306)
T ss_dssp             CBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEEC
T ss_pred             ccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccccc
Confidence              112222  266677777754      46899999887543321111111 111222 26677676653         3


Q ss_pred             CeEEEEeCCCCe
Q 005277          569 GTIMMWDLASGR  580 (704)
Q Consensus       569 g~I~iwdl~~~~  580 (704)
                      ..+.+||+.+.+
T Consensus       169 ~~~~~yd~~~~~  180 (306)
T 3ii7_A          169 NSCEVYDPATET  180 (306)
T ss_dssp             CCEEEEETTTTE
T ss_pred             ceEEEeCCCCCe
Confidence            457888887764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.35  E-value=0.096  Score=54.50  Aligned_cols=150  Identities=10%  Similarity=0.037  Sum_probs=78.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      -.....++|.|+|+.|.++...|.|++++..........                      ..........+....|+|+
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~----------------------~~~~v~~~g~~g~~gia~~   74 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLS----------------------GVPDVWAHGQGGLLDVVLA   74 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCB----------------------SCCCCCCSTTCSEEEEEEC
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEec----------------------CCcccccCCCCCceeEEEC
Confidence            345789999999993344556799988874321000000                      0000111123456899999


Q ss_pred             CC---CCEEEEEe-C-------CCeEEEEeCCCCc----ee-EEeec------CCcCeeEEEEcCCCCEEEEEeC-----
Q 005277          431 PL---GDFILSSS-A-------DTTIRLWSTKLNA----NL-VCYKG------HNYPVWDVQFNPQGHYFASSSH-----  483 (704)
Q Consensus       431 p~---~~~l~s~s-~-------Dg~I~lwd~~~~~----~~-~~~~~------h~~~V~~v~~sp~~~~l~sgs~-----  483 (704)
                      |+   +.+|+.+. .       ...|..|++....    .. ..+..      .......|.|.|+|.++++.+.     
T Consensus        75 pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~  154 (353)
T 2g8s_A           75 PDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRP  154 (353)
T ss_dssp             TTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGG
T ss_pred             CCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCC
Confidence            96   55555442 2       2356666664321    11 11111      1122467999999976665433     


Q ss_pred             --------CCeEEEEECCCCc------------eeEEeccCCCCeeEEEEcC-CCCEEEE
Q 005277          484 --------DRTARIWSMDRIQ------------PLRIMAGHLSDVDCVRWHI-NCNYIAT  522 (704)
Q Consensus       484 --------dg~i~lwd~~~~~------------~~~~~~~~~~~V~~v~~~p-~~~~l~t  522 (704)
                              .|.|.-++.+..-            ....+.........++|+| ++.++++
T Consensus       155 ~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          155 TAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             GGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred             ccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence                    2456666665420            1122222224467899999 5544443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.27  E-value=0.023  Score=57.49  Aligned_cols=132  Identities=16%  Similarity=0.154  Sum_probs=66.4

Q ss_pred             eEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeEEeccCC--CCeeEEEEc
Q 005277          444 TIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQPLRIMAGHL--SDVDCVRWH  514 (704)
Q Consensus       444 ~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~d-----g~i~lwd~~~~~~~~~~~~~~--~~V~~v~~~  514 (704)
                      .+.+||..+..-...  +......-..+.+  ++..++.|+.+     ..+.+||..+.+-...-....  ....++.  
T Consensus        31 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--  106 (302)
T 2xn4_A           31 SVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--  106 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--
T ss_pred             cEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--
Confidence            577888776542221  1111111112222  67777777754     358888887764332211111  1112222  


Q ss_pred             CCCCEEEEEECCC-----cEEEEeCCCCcEEEEeecCCC-CEEEEEEecCCCEEEEEeCC-------CeEEEEeCCCCe
Q 005277          515 INCNYIATGSSDK-----TVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDED-------GTIMMWDLASGR  580 (704)
Q Consensus       515 p~~~~l~tgs~dg-----~I~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~~l~sg~~d-------g~I~iwdl~~~~  580 (704)
                      -++.+++.|+.++     .+.+||+.+.+-...-..... .-.+++. -+++.++.|+.+       ..+.+||+.+.+
T Consensus       107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~  184 (302)
T 2xn4_A          107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNE  184 (302)
T ss_dssp             ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred             ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence            2567777777553     578899887654332111111 1112222 266777776642       357888887654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.26  E-value=0.13  Score=53.56  Aligned_cols=139  Identities=12%  Similarity=0.075  Sum_probs=79.4

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEee---cCCcCeeEEEEcCC---CCEEEEEeC----C----Ce
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCYK---GHNYPVWDVQFNPQ---GHYFASSSH----D----RT  486 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-~~~~~~---~h~~~V~~v~~sp~---~~~l~sgs~----d----g~  486 (704)
                      ....+++|.|+++ |+.+..+|.|++++. .+. .+..+.   ........|+|+|+   +..|+++..    +    +.
T Consensus        29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            3467899999998 455566699999974 344 122111   12345789999997   445544433    3    56


Q ss_pred             EEEEECCCC--c---e--e-EEec-cCCCCeeEEEEcCCCCEEEEEEC-------------CCcEEEEeCCCC-------
Q 005277          487 ARIWSMDRI--Q---P--L-RIMA-GHLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSSG-------  537 (704)
Q Consensus       487 i~lwd~~~~--~---~--~-~~~~-~~~~~V~~v~~~p~~~~l~tgs~-------------dg~I~iwd~~~~-------  537 (704)
                      |..|+....  .   .  + ..+. ........++|.|+|.+.++.+.             .|.|.-++....       
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf  186 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF  186 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence            777776543  1   1  1 1122 11123467999999987666432             245666655321       


Q ss_pred             --cEEEEeecCCCCEEEEEEec-CCCEEEE
Q 005277          538 --ECVRIFIGHRSMILSLAMSP-DGRYMAS  564 (704)
Q Consensus       538 --~~~~~~~~h~~~i~~l~~sp-dg~~l~s  564 (704)
                        ..+. -.++.. ...++|+| +|+++++
T Consensus       187 ~~~~i~-a~G~rn-p~Gla~d~~~g~l~v~  214 (354)
T 3a9g_A          187 PNSPIW-SYGHRN-PQGIDWHRASGVMVAT  214 (354)
T ss_dssp             TTCCEE-EECCSC-CCEEEECTTTCCEEEE
T ss_pred             CCCcEE-EEccCC-cceEEEeCCCCCEEEE
Confidence              1122 224443 45789999 6665554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.25  E-value=0.022  Score=57.67  Aligned_cols=145  Identities=12%  Similarity=0.105  Sum_probs=74.9

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceeE
Q 005277          432 LGDFILSSSAD-----TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHDR-----TARIWSMDRIQPLR  499 (704)
Q Consensus       432 ~~~~l~s~s~D-----g~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~dg-----~i~lwd~~~~~~~~  499 (704)
                      ++..++.|+.+     ..+.+||..+.+-...  +.........+.+  ++..++.|+.++     .+.+||+.+.+-..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            45666666644     3578888876543221  1111111122222  677778887553     57788887654333


Q ss_pred             EeccCCCC-eeEEEEcCCCCEEEEEEC-------CCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCCCEEEEEeCC-
Q 005277          500 IMAGHLSD-VDCVRWHINCNYIATGSS-------DKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDED-  568 (704)
Q Consensus       500 ~~~~~~~~-V~~v~~~p~~~~l~tgs~-------dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~~d-  568 (704)
                      .-...... -.+++. -++.+++.|+.       -..+.+||+.+++-...-.  ........+.  -++++++.|+.+ 
T Consensus       139 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~  215 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDG  215 (302)
T ss_dssp             ECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSS
T ss_pred             cCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCC
Confidence            21111111 112222 25666666653       2458899998775433211  1111112222  267777777764 


Q ss_pred             ----CeEEEEeCCCCee
Q 005277          569 ----GTIMMWDLASGRC  581 (704)
Q Consensus       569 ----g~I~iwdl~~~~~  581 (704)
                          ..+.+||+.+.+-
T Consensus       216 ~~~~~~~~~yd~~~~~W  232 (302)
T 2xn4_A          216 PLVRKSVEVYDPTTNAW  232 (302)
T ss_dssp             SSBCCCEEEEETTTTEE
T ss_pred             CcccceEEEEeCCCCCE
Confidence                3688888877643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.20  E-value=0.045  Score=55.47  Aligned_cols=145  Identities=7%  Similarity=0.020  Sum_probs=76.1

Q ss_pred             CCCEEEEEeCC----CeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCC------CeEEEEECCCCceeE
Q 005277          432 LGDFILSSSAD----TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRIQPLR  499 (704)
Q Consensus       432 ~~~~l~s~s~D----g~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~d------g~i~lwd~~~~~~~~  499 (704)
                      ++..++.|+.+    ..+.+||..+.+-...  +.........+.+  ++..++.|+.+      ..+.+||..+.+-..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            45566666644    5688889887643222  1111111122222  67777888765      468889988765333


Q ss_pred             EeccCCCCe-eEEEEcCCCCEEEEEEC---------CCcEEEEeCCCCcEEEEeecCCCC-EEEEEEecCCCEEEEEeCC
Q 005277          500 IMAGHLSDV-DCVRWHINCNYIATGSS---------DKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGDED  568 (704)
Q Consensus       500 ~~~~~~~~V-~~v~~~p~~~~l~tgs~---------dg~I~iwd~~~~~~~~~~~~h~~~-i~~l~~spdg~~l~sg~~d  568 (704)
                      .-....... .+++. -++.+++.|+.         -..+.+||+.+..-...-...... -.+++.. ++++++.|+.+
T Consensus       133 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~  210 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQN  210 (306)
T ss_dssp             ECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEE
T ss_pred             CCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCC
Confidence            211111111 11222 35666666653         345889999887543321111111 1122222 67777777653


Q ss_pred             -----CeEEEEeCCCCe
Q 005277          569 -----GTIMMWDLASGR  580 (704)
Q Consensus       569 -----g~I~iwdl~~~~  580 (704)
                           ..+.+||+.+.+
T Consensus       211 ~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          211 GLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             TTEEBCCEEEEETTTTE
T ss_pred             CCCCCceEEEeeCCCCc
Confidence                 357888887764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.09  E-value=0.39  Score=50.53  Aligned_cols=206  Identities=12%  Similarity=0.220  Sum_probs=132.5

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE
Q 005277          357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI  436 (704)
Q Consensus       357 ~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l  436 (704)
                      .-.+|..+.||.=. ...++|+|+....                            ...... ...+|.-=.|-.+ +.|
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~----------------------------klks~~-~~e~VvfWkWis~-~~l  119 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKS----------------------------KMKAHT-MTDDVTFWKWISL-NTV  119 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTE----------------------------EEEEEE-CSSCCCEEEEEET-TEE
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhh----------------------------hhccee-cCCCceEEEecCC-CeE
Confidence            34567777777664 6789999998622                            111111 1234555566543 345


Q ss_pred             EEEeCCCeEEEEeCCC-CceeEEeecC----CcCeeEEEEcCCCCEEEEEe-------CCCeEEEEECCCCceeEEeccC
Q 005277          437 LSSSADTTIRLWSTKL-NANLVCYKGH----NYPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       437 ~s~s~Dg~I~lwd~~~-~~~~~~~~~h----~~~V~~v~~sp~~~~l~sgs-------~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      +-.+ +..|.-|++.. ..++..+..|    ...|..-..+++.++++..|       -.|.+.+|..++. ..+.+.||
T Consensus       120 ~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh  197 (494)
T 1bpo_A          120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH  197 (494)
T ss_dssp             EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS
T ss_pred             EEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee
Confidence            5444 35799999974 3456666654    35677778888999887654       3478999999875 45667788


Q ss_pred             CCCeeEEEEcCC---CCEEEEEECC---CcEEEEeCCCC---------cEEEEeec---CCCCEEEEEEecCCCEEEEEe
Q 005277          505 LSDVDCVRWHIN---CNYIATGSSD---KTVRLWDVSSG---------ECVRIFIG---HRSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       505 ~~~V~~v~~~p~---~~~l~tgs~d---g~I~iwd~~~~---------~~~~~~~~---h~~~i~~l~~spdg~~l~sg~  566 (704)
                      ......+....+   .+.++.+...   +.+++.++...         +.+..+..   ..+-..++..|+.-..++.-+
T Consensus       198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT  277 (494)
T 1bpo_A          198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT  277 (494)
T ss_dssp             EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE
T ss_pred             eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe
Confidence            665554444321   2344444432   78999988532         12222222   234566889999888899999


Q ss_pred             CCCeEEEEeCCCCeeeeeecCCCceeeee
Q 005277          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTL  595 (704)
Q Consensus       567 ~dg~I~iwdl~~~~~~~~~~~h~~~V~sl  595 (704)
                      .-|.|++||+.++.++..-+-...+|...
T Consensus       278 K~G~i~lyDleTgt~i~~nrIs~~~iF~t  306 (494)
T 1bpo_A          278 KYGYIHLYDLETGTCIYMNRISGETIFVT  306 (494)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             cCceEEEEecccceeeeeecccCCceEEe
Confidence            99999999999999987766555555443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.03  E-value=0.036  Score=56.39  Aligned_cols=143  Identities=10%  Similarity=-0.005  Sum_probs=71.6

Q ss_pred             CCCEEEEEeC----CCeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeC----C-----CeEEEEECCCCc
Q 005277          432 LGDFILSSSA----DTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSH----D-----RTARIWSMDRIQ  496 (704)
Q Consensus       432 ~~~~l~s~s~----Dg~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~----d-----g~i~lwd~~~~~  496 (704)
                      ++..++.|+.    -..+.+||..+.+-...  +....... +++.. ++..++.|+.    +     ..+.+||..+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            3455555553    23578888876543221  11111111 22222 5667777765    2     457888887654


Q ss_pred             eeEEe--ccCCCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCCCEEEEEeC
Q 005277          497 PLRIM--AGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       497 ~~~~~--~~~~~~V~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      -...-  ........++.  -++.+++.|+.+     ..+.+||..+.+-...-.  .....-.++.+  +++.++.|+.
T Consensus       102 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  177 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF  177 (308)
T ss_dssp             EEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence            32221  11111122222  256677776643     468899988765333211  11111122222  6777777765


Q ss_pred             C-----CeEEEEeCCCCe
Q 005277          568 D-----GTIMMWDLASGR  580 (704)
Q Consensus       568 d-----g~I~iwdl~~~~  580 (704)
                      +     ..+.+||+.+.+
T Consensus       178 ~~~~~~~~~~~yd~~~~~  195 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNE  195 (308)
T ss_dssp             CSSCBCCCEEEEETTTTE
T ss_pred             CCCCcCceEEEEeCCCCe
Confidence            4     457888877654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.90  E-value=0.5  Score=48.71  Aligned_cols=210  Identities=13%  Similarity=0.135  Sum_probs=108.8

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (704)
                      ++...-..-..++|.|||+++++-...|.|++++...........                      .-.......+...
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~----------------------~~~v~~~g~~Gll   83 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGE----------------------VPGVSPSGEGGLL   83 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE----------------------CTTCCCBTTBSEE
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecc----------------------cCceeecCCCCce
Confidence            344445667899999999987777558999888743211100000                      0001122345688


Q ss_pred             EEEEcCC---CCEEEEE---eCCCeEEEEeCCCCc--------e--eE-Eee-cCCcCeeEEEEcCCCCEEEEEeC----
Q 005277          426 SASFSPL---GDFILSS---SADTTIRLWSTKLNA--------N--LV-CYK-GHNYPVWDVQFNPQGHYFASSSH----  483 (704)
Q Consensus       426 ~l~~sp~---~~~l~s~---s~Dg~I~lwd~~~~~--------~--~~-~~~-~h~~~V~~v~~sp~~~~l~sgs~----  483 (704)
                      .|+|+|+   +.+|+.+   ..++.|.-|.+..+.        .  +. .+. ........|.|.|+|.++++.+.    
T Consensus        84 Gia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~  163 (347)
T 3das_A           84 GIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDT  163 (347)
T ss_dssp             EEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCG
T ss_pred             eeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCC
Confidence            9999996   4445433   244556666655411        1  11 121 11223467999999987777542    


Q ss_pred             ---------CCeEEEEECCCCc-------eeEEec-cCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCc-------
Q 005277          484 ---------DRTARIWSMDRIQ-------PLRIMA-GHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGE-------  538 (704)
Q Consensus       484 ---------dg~i~lwd~~~~~-------~~~~~~-~~~~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~-------  538 (704)
                               .|.|.-.+.+..-       ....+. +| .....++|+|++.+.++- +.++.-.|--+..|.       
T Consensus       164 ~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~  242 (347)
T 3das_A          164 GLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEA  242 (347)
T ss_dssp             GGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTC
T ss_pred             ccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcc
Confidence                     3445444554320       112222 34 346689999987665543 223322332222221       


Q ss_pred             -----------EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277          539 -----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (704)
Q Consensus       539 -----------~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~  579 (704)
                                 ++..+..+......++|. +|..++..-..+.|....+...
T Consensus       243 ~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~  293 (347)
T 3das_A          243 EGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGT  293 (347)
T ss_dssp             CSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETT
T ss_pred             cCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCC
Confidence                       122232222355667776 4555555544555555555433

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.86  E-value=0.25  Score=51.27  Aligned_cols=153  Identities=14%  Similarity=0.167  Sum_probs=92.3

Q ss_pred             CeEEEEEcCCCCEEEEE------------eCCCeEEEEeCCCC--ce-eEEeec-----CCcCeeEEEEcC--CCC-EEE
Q 005277          423 PVYSASFSPLGDFILSS------------SADTTIRLWSTKLN--AN-LVCYKG-----HNYPVWDVQFNP--QGH-YFA  479 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~------------s~Dg~I~lwd~~~~--~~-~~~~~~-----h~~~V~~v~~sp--~~~-~l~  479 (704)
                      ....+...|+|..++++            ..+|.|.++|..+.  +. ...+.+     .......+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            45677788877655554            26899999998742  21 112222     224566777765  343 444


Q ss_pred             EEe-C--CCeEEEEECCCCce----eEEeccC-CCCeeEEEEcCCCCEEEEEEC-----------------CCcEEEEeC
Q 005277          480 SSS-H--DRTARIWSMDRIQP----LRIMAGH-LSDVDCVRWHINCNYIATGSS-----------------DKTVRLWDV  534 (704)
Q Consensus       480 sgs-~--dg~i~lwd~~~~~~----~~~~~~~-~~~V~~v~~~p~~~~l~tgs~-----------------dg~I~iwd~  534 (704)
                      ++. .  +.++.+|+++....    +..+.+. ....+.+.+.++|.+.++...                 .|.|.-+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            443 2  46788887765322    2233322 235778999999987776541                 244555554


Q ss_pred             CCCcEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCC
Q 005277          535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS  578 (704)
Q Consensus       535 ~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~  578 (704)
                        ++.. .....-...+.++|+|||+.|+.+. ..+.|..|++..
T Consensus       211 --~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          211 --NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             --TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             --CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence              3322 2222334578999999998877665 568899999863

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.84  E-value=0.14  Score=53.03  Aligned_cols=151  Identities=12%  Similarity=0.197  Sum_probs=92.1

Q ss_pred             cCeEEEEEcC--CCC-EEEEE-eC--CCeEEEEeCCCCce----eEEeecC-CcCeeEEEEcCCCCEEEEEeC-------
Q 005277          422 GPVYSASFSP--LGD-FILSS-SA--DTTIRLWSTKLNAN----LVCYKGH-NYPVWDVQFNPQGHYFASSSH-------  483 (704)
Q Consensus       422 ~~V~~l~~sp--~~~-~l~s~-s~--Dg~I~lwd~~~~~~----~~~~~~h-~~~V~~v~~sp~~~~l~sgs~-------  483 (704)
                      .....+.+.+  ++. +|+.+ ..  +.+|.+|+++....    +..+.+. -....++.+.++|.+.++...       
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence            3455666655  344 34444 22  57888988775432    2233322 235789999999987776541       


Q ss_pred             ----------CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCC-CcE--EEEeecCCCC
Q 005277          484 ----------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS-GEC--VRIFIGHRSM  549 (704)
Q Consensus       484 ----------dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~-~~~--~~~~~~h~~~  549 (704)
                                .|.+..+|.  ++ +..+......-+.++|+|+++.|+++. ..+.|+.|++.. +..  .+.+ ...+.
T Consensus       192 ~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~  267 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTL  267 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSE
T ss_pred             ccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCC
Confidence                      234444444  32 333333445678999999998887765 568899999863 332  2334 23456


Q ss_pred             EEEEEEec-CCCEEEEEeCC-CeEEEEeC
Q 005277          550 ILSLAMSP-DGRYMASGDED-GTIMMWDL  576 (704)
Q Consensus       550 i~~l~~sp-dg~~l~sg~~d-g~I~iwdl  576 (704)
                      .-.+++.+ +|++.+++..+ +.|..||.
T Consensus       268 PDGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          268 VDNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             EEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             CceEEEeCCCCcEEEEecCCceEEEEECC
Confidence            78889998 58877766544 34554553

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.82  E-value=0.72  Score=49.61  Aligned_cols=112  Identities=11%  Similarity=0.084  Sum_probs=60.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      -.....++|.|||+++++-...+.|++++............ .                   .........+....|+|+
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~-~-------------------~~~~~~~g~~Gllgia~~   85 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQV-P-------------------EIVNDADGQNGLLGFAFH   85 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-T-------------------TCCCCTTSSCSEEEEEEC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecC-C-------------------ccccccCCCCceeEEEEC
Confidence            44678999999999777654445687776432111000000 0                   000000124567899999


Q ss_pred             CC---CCEEEEEeC-------------CCeEEEEeCCCCc-------eeEE-ee-cCCcCeeEEEEcCCCCEEEEEe
Q 005277          431 PL---GDFILSSSA-------------DTTIRLWSTKLNA-------NLVC-YK-GHNYPVWDVQFNPQGHYFASSS  482 (704)
Q Consensus       431 p~---~~~l~s~s~-------------Dg~I~lwd~~~~~-------~~~~-~~-~h~~~V~~v~~sp~~~~l~sgs  482 (704)
                      |+   +.+|+.+..             ...|.-|+.....       .+.. +. ........|.|.|+|.++++.+
T Consensus        86 Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           86 PDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            96   555554432             2345555543221       1111 21 1123468999999998777654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.81  E-value=0.088  Score=53.57  Aligned_cols=147  Identities=5%  Similarity=-0.039  Sum_probs=73.4

Q ss_pred             CCCCEEEEEeC-----C------CeEEEEeCCCCceeE--EeecCCcCeeEEEEcCCCCEEEEEeCC--------CeEEE
Q 005277          431 PLGDFILSSSA-----D------TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHD--------RTARI  489 (704)
Q Consensus       431 p~~~~l~s~s~-----D------g~I~lwd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~sgs~d--------g~i~l  489 (704)
                      .++..++.|+.     .      ..+.+||..+.+-..  .+.........+.+  ++..++.|+.+        ..+.+
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~  121 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMC  121 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEE
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEE
Confidence            46676666763     1      126778887654321  11111111111222  56677777632        45888


Q ss_pred             EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-C-----CcEEEEeCCCCcEEEEeecCCCC-EEEEEEecCCCEE
Q 005277          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-D-----KTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYM  562 (704)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-d-----g~I~iwd~~~~~~~~~~~~h~~~-i~~l~~spdg~~l  562 (704)
                      ||..+.+-...-..........+..-++.+++.|+. +     ..+.+||..+.+-...-...... -.+++ .-+++.+
T Consensus       122 ~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iy  200 (315)
T 4asc_A          122 YDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRII  200 (315)
T ss_dssp             EETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEE
T ss_pred             ECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEE
Confidence            898775432211111111111111235667777765 2     46899999876533221111111 11222 2267777


Q ss_pred             EEEeCCC-----eEEEEeCCCCe
Q 005277          563 ASGDEDG-----TIMMWDLASGR  580 (704)
Q Consensus       563 ~sg~~dg-----~I~iwdl~~~~  580 (704)
                      +.|+.++     .+.+||+.+.+
T Consensus       201 v~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          201 VAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             EEEEECSSSEEEEEEEEETTTTE
T ss_pred             EEeccCCCCccceEEEEECCCCe
Confidence            7887654     57888887764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.81  E-value=0.11  Score=52.96  Aligned_cols=141  Identities=9%  Similarity=-0.061  Sum_probs=70.8

Q ss_pred             EEEEeCCCeEEEEeCCCCceeE-EeecCCcCeeEEEEcCCCCEEEEEeC-----C------CeEEEEECCCCceeEEecc
Q 005277          436 ILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSH-----D------RTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       436 l~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~v~~sp~~~~l~sgs~-----d------g~i~lwd~~~~~~~~~~~~  503 (704)
                      ++.|+  ..+.+||..+.+-.. .+..............++..++.|+.     .      ..+..||..+.+-.. +..
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~   84 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPP   84 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCC
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCC
Confidence            34454  468899988766432 11111122222233447788888873     1      126778887654322 111


Q ss_pred             CCCC-e-eEEEEcCCCCEEEEEECC--------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC-C----
Q 005277          504 HLSD-V-DCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-D----  568 (704)
Q Consensus       504 ~~~~-V-~~v~~~p~~~~l~tgs~d--------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~-d----  568 (704)
                      -..+ . .+++. -++.+++.|+.+        ..+.+||..+++-...-..........+..-+++.++.|+. +    
T Consensus        85 ~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  163 (315)
T 4asc_A           85 LPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKC  163 (315)
T ss_dssp             BSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCB
T ss_pred             CCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcc
Confidence            1111 0 11222 256666666632        45899999877533211111111111122236777777775 2    


Q ss_pred             -CeEEEEeCCCCe
Q 005277          569 -GTIMMWDLASGR  580 (704)
Q Consensus       569 -g~I~iwdl~~~~  580 (704)
                       ..+.+||+.+.+
T Consensus       164 ~~~~~~yd~~~~~  176 (315)
T 4asc_A          164 LNKMCVYDPKKFE  176 (315)
T ss_dssp             CCCEEEEETTTTE
T ss_pred             cceEEEEeCCCCe
Confidence             468888887654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.80  E-value=0.13  Score=54.10  Aligned_cols=142  Identities=16%  Similarity=0.166  Sum_probs=97.2

Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC---Cc-CeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------
Q 005277          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGH---NY-PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ---------  496 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h---~~-~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~---------  496 (704)
                      +.+|..++.+- ++.||.-++.....-+.++..   .. .|..+..+|+|.++|..+. ..|.|..+..+.         
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            34566666654 468888888755444444432   22 6888999999999998864 688888876221         


Q ss_pred             ---eeEEecc------CCCCeeEEEEcCC---CCEEEEEECCCcEEEEeCCCC--cEEEEee---------cCCCCEEEE
Q 005277          497 ---PLRIMAG------HLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSG--ECVRIFI---------GHRSMILSL  553 (704)
Q Consensus       497 ---~~~~~~~------~~~~V~~v~~~p~---~~~l~tgs~dg~I~iwd~~~~--~~~~~~~---------~h~~~i~~l  553 (704)
                         ..+.+.-      ...+|..+.|||-   +..|++-..|+.|++||+...  ++. .+.         .....|.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence               1223321      2467999999994   578999999999999999752  222 222         122568899


Q ss_pred             EEecCCCEEEEEe--CCCeEEEE
Q 005277          554 AMSPDGRYMASGD--EDGTIMMW  574 (704)
Q Consensus       554 ~~spdg~~l~sg~--~dg~I~iw  574 (704)
                      +|.++|-.|...+  ..|.|+-.
T Consensus       186 ~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          186 EFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEcCCCcEEEEEecCCCCCEEEE
Confidence            9999887777755  77877654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.71  E-value=0.31  Score=50.62  Aligned_cols=141  Identities=12%  Similarity=0.067  Sum_probs=77.2

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-------ecCCcCeeEEEEcCC---CCEEEEE-eC-------
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-------KGHNYPVWDVQFNPQ---GHYFASS-SH-------  483 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~-------~~h~~~V~~v~~sp~---~~~l~sg-s~-------  483 (704)
                      ....+|+|.|++++|+.+...|.|++++.. +.....+       .........|+|+|+   +..|..+ +.       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            346799999999844455667999999854 3221111       112345689999995   4444443 22       


Q ss_pred             CCeEEEEECCCCc----eeE-Eecc------CCCCeeEEEEcCCCCEEEEEEC-------------CCcEEEEeCCCCc-
Q 005277          484 DRTARIWSMDRIQ----PLR-IMAG------HLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSSGE-  538 (704)
Q Consensus       484 dg~i~lwd~~~~~----~~~-~~~~------~~~~V~~v~~~p~~~~l~tgs~-------------dg~I~iwd~~~~~-  538 (704)
                      ...|..|+.+...    ... .+..      ....-..+.|.|+|.+.++.+.             .|.|.-++....- 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            2356666664321    111 1211      1112457999999965555433             2456666654220 


Q ss_pred             -----------EEEEe-ecCCCCEEEEEEec-CCCEEEE
Q 005277          539 -----------CVRIF-IGHRSMILSLAMSP-DGRYMAS  564 (704)
Q Consensus       539 -----------~~~~~-~~h~~~i~~l~~sp-dg~~l~s  564 (704)
                                 ....+ .++. ....++|+| +|++.++
T Consensus       177 ~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred             CCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence                       11111 2343 367899999 5654443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.70  E-value=1.4  Score=50.83  Aligned_cols=194  Identities=9%  Similarity=0.068  Sum_probs=112.6

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      ++.|+|+.-..+|. |..|+.+| +..||-....  .. .                .        ........|.++.-.
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~--~~-~----------------~--------~~~~~~~~i~~i~~d   71 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQ--QH-F----------------T--------YGENNNTRIYCGVII   71 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEE--EC-S----------------C--------TTSTTSSCEEEEEEE
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCceE--EE-E----------------c--------cCCCCCceEEEEEEc
Confidence            56799999888875 56677787 4445521100  00 0                0        000123468888777


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec----cCCC
Q 005277          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA----GHLS  506 (704)
Q Consensus       431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~----~~~~  506 (704)
                      .++ .|..|+.+| +..||..+.............|+++... +| .+..|+.+ -+..+|..+.+......    ....
T Consensus        72 ~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~  146 (758)
T 3ott_A           72 DNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNN  146 (758)
T ss_dssp             TTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCS
T ss_pred             CCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCC
Confidence            665 466666665 7889987654322111122357776543 44 57777765 68888887654332211    1234


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC-----CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (704)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-----~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~  581 (704)
                      .|.++....++.+. .|+.+ -+..+|..+++........     ...|.++...+++..|..|+. +-+..+|..+++.
T Consensus       147 ~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~  223 (758)
T 3ott_A          147 TIYSIIRTKDNQIY-VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI  223 (758)
T ss_dssp             CEEEEEECTTCCEE-EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE
T ss_pred             eEEEEEEcCCCCEE-EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE
Confidence            57788777776644 45554 4788888776543321111     224888888887775555654 4588889877653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.69  E-value=0.071  Score=54.11  Aligned_cols=144  Identities=15%  Similarity=0.108  Sum_probs=74.2

Q ss_pred             CCCEEEEEeC----C-----CeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 005277          432 LGDFILSSSA----D-----TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRI  495 (704)
Q Consensus       432 ~~~~l~s~s~----D-----g~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~d-----g~i~lwd~~~~  495 (704)
                      ++..++.|+.    +     ..+.+||..+.+-...  +.........+.+  ++..++.|+.+     ..+.+||..+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            4555555554    2     3578888876542221  1111111122222  67777777643     45788888765


Q ss_pred             ceeEEec--cCCCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCCCEEEEEe
Q 005277          496 QPLRIMA--GHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       496 ~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~  566 (704)
                      +-...-.  .......++.+  ++.+++.|+.+     ..+.+||+.+.+-...-.  .......++.+  +++.++.|+
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  223 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGG  223 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeC
Confidence            4322211  11111122222  56677777654     458999988765332211  11111222222  677777777


Q ss_pred             CC-----CeEEEEeCCCCee
Q 005277          567 ED-----GTIMMWDLASGRC  581 (704)
Q Consensus       567 ~d-----g~I~iwdl~~~~~  581 (704)
                      .+     ..+.+||+.+.+-
T Consensus       224 ~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          224 YDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             BCSSSBCCCEEEEETTTTEE
T ss_pred             CCCCCccceEEEEeCCCCcE
Confidence            54     4688889877643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.51  E-value=1.2  Score=47.88  Aligned_cols=103  Identities=11%  Similarity=0.096  Sum_probs=60.1

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--Eeec------CCcCeeEEEEcCC---CCEEEEEeC-------
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--CYKG------HNYPVWDVQFNPQ---GHYFASSSH-------  483 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~--~~~~------h~~~V~~v~~sp~---~~~l~sgs~-------  483 (704)
                      ....+|+|.|+|+++++-...+.|++++..++....  .+..      .......|+|+|+   +.+|..+..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            345799999999976665444578888865554322  2211      2345679999995   444444432       


Q ss_pred             ------CCeEEEEECCCC-----ceeEE---ec-cCCCCeeEEEEcCCCCEEEEEE
Q 005277          484 ------DRTARIWSMDRI-----QPLRI---MA-GHLSDVDCVRWHINCNYIATGS  524 (704)
Q Consensus       484 ------dg~i~lwd~~~~-----~~~~~---~~-~~~~~V~~v~~~p~~~~l~tgs  524 (704)
                            ...|.-|+.+..     .....   +. ........|+|.|+|.+.++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                  234555554321     11111   21 1123468899999998777644

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.46  E-value=0.28  Score=49.87  Aligned_cols=147  Identities=7%  Similarity=0.061  Sum_probs=72.5

Q ss_pred             cCCCCEEEEEeC----CC-------eEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCC-------CeEEE
Q 005277          430 SPLGDFILSSSA----DT-------TIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-------RTARI  489 (704)
Q Consensus       430 sp~~~~l~s~s~----Dg-------~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~d-------g~i~l  489 (704)
                      ..++..++.|+.    ++       .+.+||..+.+-...  +.........+.+  ++..++.|+.+       ..+.+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence            345666677763    11       266778765543221  1111111112222  67777777754       35778


Q ss_pred             EECCCCceeEEeccCCCCe-eEEEEcCCCCEEEEEEC------CCcEEEEeCCCCcEEEEeecCCC-CEEEEEEecCCCE
Q 005277          490 WSMDRIQPLRIMAGHLSDV-DCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRY  561 (704)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V-~~v~~~p~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~~  561 (704)
                      ||..+.+-...-....... .+++. .++.+++.|+.      -..+.+||+.+.+-...-..... .-.+++. -+++.
T Consensus       132 yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i  209 (318)
T 2woz_A          132 YDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKI  209 (318)
T ss_dssp             EETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE
T ss_pred             EeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEE
Confidence            8887654332211111111 11222 46666677653      24589999988754332111111 1112222 26777


Q ss_pred             EEEEeCC-----CeEEEEeCCCCe
Q 005277          562 MASGDED-----GTIMMWDLASGR  580 (704)
Q Consensus       562 l~sg~~d-----g~I~iwdl~~~~  580 (704)
                      ++.|+.+     ..+.+||+.+.+
T Consensus       210 yv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          210 VIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EEEEEEETTEEEEEEEEEETTTCC
T ss_pred             EEEcCcCCCCccceEEEEECCCCe
Confidence            7777643     356788887654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.42  E-value=2.3  Score=51.34  Aligned_cols=187  Identities=12%  Similarity=0.155  Sum_probs=102.6

Q ss_pred             eCCCCEEEEEEcCC------CCEEEEEeC-CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC--
Q 005277          349 NTHNGLNCASISQD------GSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG--  419 (704)
Q Consensus       349 ~~~~~V~~~~fs~d------g~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  419 (704)
                      .-...|.|+++.|.      ++++|+|+. |++|+|+++........                          ..+.+  
T Consensus       551 ~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~--------------------------~~L~~~~  604 (1158)
T 3ei3_A          551 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHK--------------------------EMLGGEI  604 (1158)
T ss_dssp             ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEE--------------------------EECCSSC
T ss_pred             CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEE--------------------------EECCCCC
Confidence            34568999999863      479999997 99999999975322111                          01110  


Q ss_pred             CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceeE---EeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTK--LNANLV---CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~--~~~~~~---~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~  494 (704)
                      -...|.-+.+ ....+|..|-.||.+.-+.++  ++....   .+-| ..++.-..+...|..-+.+..++...++.-+.
T Consensus       605 ~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~  682 (1158)
T 3ei3_A          605 IPRSILMTTF-ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH  682 (1158)
T ss_dssp             CEEEEEEEEE-TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESSS
T ss_pred             CCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcCC
Confidence            1112322333 234578899999998665544  443321   2233 44666555555554444444455555555432


Q ss_pred             CceeEEeccCCCCee-EEEEcCC--CCEEEEEECCCcEEEEeCCCCc--EEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          495 IQPLRIMAGHLSDVD-CVRWHIN--CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       495 ~~~~~~~~~~~~~V~-~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                       +.. ...-....+. ...|+..  .+-++.. .++.++|..+..-.  .++.+ .-...+..++++|..+.++.+..
T Consensus       683 -~l~-~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~  756 (1158)
T 3ei3_A          683 -KLV-FSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSS  756 (1158)
T ss_dssp             -SEE-EEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEE
T ss_pred             -ceE-EeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEE-eCCCCceEEEEcCCCCEEEEEEE
Confidence             222 1111222333 3345432  2334433 45669988775432  23333 23467899999998887666543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.37  E-value=0.36  Score=48.97  Aligned_cols=135  Identities=7%  Similarity=0.004  Sum_probs=67.0

Q ss_pred             eEEEEeCCCCceeEE-eecCCcCeeEEEEcCCCCEEEEEeC----CC-------eEEEEECCCCceeEE--eccCCCCee
Q 005277          444 TIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQGHYFASSSH----DR-------TARIWSMDRIQPLRI--MAGHLSDVD  509 (704)
Q Consensus       444 ~I~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~~~l~sgs~----dg-------~i~lwd~~~~~~~~~--~~~~~~~V~  509 (704)
                      .+.+||..+.+-... ...............++..++.|+.    ++       .+..||..+.+-...  +........
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  104 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG  104 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence            478888887654331 1111111222233447778888873    12       167788776543222  111111112


Q ss_pred             EEEEcCCCCEEEEEECC-------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC------CCeEEEEeC
Q 005277          510 CVRWHINCNYIATGSSD-------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE------DGTIMMWDL  576 (704)
Q Consensus       510 ~v~~~p~~~~l~tgs~d-------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~------dg~I~iwdl  576 (704)
                      .+.+  ++.+++.|+.+       ..+.+||..+.+-...-..........+...+++.++.|+.      -..+.+||+
T Consensus       105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~  182 (318)
T 2woz_A          105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNP  182 (318)
T ss_dssp             EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEET
T ss_pred             eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcC
Confidence            2222  56677777754       34888998876543321111111111112246777777764      235888888


Q ss_pred             CCCe
Q 005277          577 ASGR  580 (704)
Q Consensus       577 ~~~~  580 (704)
                      .+.+
T Consensus       183 ~~~~  186 (318)
T 2woz_A          183 KKGD  186 (318)
T ss_dssp             TTTE
T ss_pred             CCCE
Confidence            7764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.31  E-value=1.4  Score=46.45  Aligned_cols=242  Identities=12%  Similarity=0.145  Sum_probs=137.7

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEeccCC
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHL  505 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-~~~~~~~~~~~  505 (704)
                      .-.+|..+.++.=. ..++.|+|+++...+..+.-.. +|.--.|-.+. .++..+ +..|+-|+++. ..|...|..|.
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~  146 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecch
Confidence            44567777666544 5799999999999888887544 56566666443 444443 47899999974 46777777653


Q ss_pred             ----CCeeEEEEcCCCCEEEEEE-------CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC---CEEEEEeC---C
Q 005277          506 ----SDVDCVRWHINCNYIATGS-------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASGDE---D  568 (704)
Q Consensus       506 ----~~V~~v~~~p~~~~l~tgs-------~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg---~~l~sg~~---d  568 (704)
                          ..|..-..+++.++++..+       -.|.+.+|.+..+. .+.+.||.+.-..+.+..+.   ..++.+..   .
T Consensus       147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g  225 (494)
T 1bpo_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (494)
T ss_dssp             GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred             hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence                4566677788899887543       24778999986554 34566776544433332111   23333332   2


Q ss_pred             CeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcE
Q 005277          569 GTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV  647 (704)
Q Consensus       569 g~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V  647 (704)
                      +.++|.++... ..-   .........+.|.+             .....+.+.       .-+|+.-.+++.-+.-|.|
T Consensus       226 ~kLhi~Ei~~~~~~~---~~f~kk~vdv~fpp-------------e~~~DFPva-------mqvs~kygviyviTK~G~i  282 (494)
T 1bpo_A          226 GKLHIIEVGTPPTGN---QPFPKKAVDVFFPP-------------EAQNDFPVA-------MQISEKHDVVFLITKYGYI  282 (494)
T ss_dssp             CEEEEEECSCCCTTC---CCCCCEEEECCCCT-------------TSTTCCEEE-------EEEETTTTEEEEEETTSEE
T ss_pred             cEEEEEEcCCCccCC---CCccceeeeeeCCc-------------ccccCceeE-------EEecccCCEEEEEecCceE
Confidence            78888888542 000   01111111221100             000001000       0116677788889999999


Q ss_pred             EEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          648 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       648 ~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                      ++||+.++..+....-....   --+.......+.|.+  .+++|+.|.+.-.+
T Consensus       283 ~lyDleTgt~i~~nrIs~~~---iF~t~~~~~~~Gi~~--Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          283 HLYDLETGTCIYMNRISGET---IFVTAPHEATAGIIG--VNRKGQVLSVCVEE  331 (494)
T ss_dssp             EEEETTTCCEEEEEECCSSC---EEEEEEETTTTEEEE--EETTCEEEEEEECT
T ss_pred             EEEecccceeeeeecccCCc---eEEecccCCCCcEEE--EccCceEEEEEEcc
Confidence            99999999876443211110   111222233344443  34777777765544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.25  E-value=0.32  Score=51.14  Aligned_cols=103  Identities=17%  Similarity=0.158  Sum_probs=70.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeEEeccC----CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-----------
Q 005277          474 QGHYFASSSHDRTARIWSMDRIQPLRIMAGH----LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-----------  538 (704)
Q Consensus       474 ~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~----~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-----------  538 (704)
                      +|.-++.+- ++.||.-++.....-+.+...    ...|..+..+|+|++||..+ +..|.|..+..+.           
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence            444444432 366666666533334444322    23688899999999999985 5589998887321           


Q ss_pred             -EEEEeec------CCCCEEEEEEecC---CCEEEEEeCCCeEEEEeCCC
Q 005277          539 -CVRIFIG------HRSMILSLAMSPD---GRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       539 -~~~~~~~------h~~~i~~l~~spd---g~~l~sg~~dg~I~iwdl~~  578 (704)
                       ..+.+.-      ...+|..+.|+|-   |..|++-..|+.|++||+..
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence             1223332      2567999999994   56899999999999999986

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.14  E-value=0.3  Score=46.59  Aligned_cols=135  Identities=11%  Similarity=0.016  Sum_probs=81.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCce------eEEeec-CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce------eE
Q 005277          433 GDFILSSSADTTIRLWSTKLNAN------LVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP------LR  499 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~------~~~~~~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~------~~  499 (704)
                      ...|+....| +++.=....+..      ...+-. -=..+.+++|+|+|.+.++  .+|.+.-.+..+...      -.
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence            4456677777 666655444331      122221 1246789999999997777  667766666544211      11


Q ss_pred             Ee-ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE-------EEEeecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277          500 IM-AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (704)
Q Consensus       500 ~~-~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-------~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I  571 (704)
                      .+ ...-....++.|.|+|.+.++  .||.|+-++-.+...       ..+-..--..+..|.|.|+|.+.++.  ||.+
T Consensus        81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A           81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            11 111112578999999988888  569998888643211       11111122468999999999877666  7775


Q ss_pred             EEE
Q 005277          572 MMW  574 (704)
Q Consensus       572 ~iw  574 (704)
                      .-+
T Consensus       157 yr~  159 (236)
T 1tl2_A          157 YKA  159 (236)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            433

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.06  E-value=0.17  Score=52.47  Aligned_cols=93  Identities=11%  Similarity=0.127  Sum_probs=45.0

Q ss_pred             CCCEEEEEeC-CCeEEEEeCCC--C--ceeEEee-cCCcCeeEEEEcCCCCEEEEEeC-C---------CeEEEEECCCC
Q 005277          432 LGDFILSSSA-DTTIRLWSTKL--N--ANLVCYK-GHNYPVWDVQFNPQGHYFASSSH-D---------RTARIWSMDRI  495 (704)
Q Consensus       432 ~~~~l~s~s~-Dg~I~lwd~~~--~--~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~-d---------g~i~lwd~~~~  495 (704)
                      ++..++.|+. ...+.++|..+  .  ..+..+. ........+.+  ++..++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            4555555543 34688888864  2  1222222 11111122222  5777777765 2         46888898775


Q ss_pred             ceeEEeccC-CCCeeEEEEcCCCCEEEEEECC
Q 005277          496 QPLRIMAGH-LSDVDCVRWHINCNYIATGSSD  526 (704)
Q Consensus       496 ~~~~~~~~~-~~~V~~v~~~p~~~~l~tgs~d  526 (704)
                      +-...-... .......+...++.+++.|+.+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred             cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence            433221111 1111111222567777888754

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.94  E-value=1.8  Score=44.49  Aligned_cols=146  Identities=16%  Similarity=0.163  Sum_probs=84.0

Q ss_pred             ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE--e----ecCCcCeeEEEEcCC---CCEEEEE-e--CC
Q 005277          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--Y----KGHNYPVWDVQFNPQ---GHYFASS-S--HD  484 (704)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~--~----~~h~~~V~~v~~sp~---~~~l~sg-s--~d  484 (704)
                      +...-.....|+|.|+++++++--..|.|++++...+.....  +    .........|+++|+   +.+|... +  .+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            333344568999999999776665589999998765543211  1    122456789999995   3344332 2  44


Q ss_pred             CeEEEEECCCC--------ceeEE---ec-cCCCCeeEEEEcCCCCEEEEEEC-------------CCcEEEEeCCCC--
Q 005277          485 RTARIWSMDRI--------QPLRI---MA-GHLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSSG--  537 (704)
Q Consensus       485 g~i~lwd~~~~--------~~~~~---~~-~~~~~V~~v~~~p~~~~l~tgs~-------------dg~I~iwd~~~~--  537 (704)
                      +.|.-|.....        .....   +. .....-..|.|.|+|.+.++.+.             .|.|.-.+....  
T Consensus       107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip  186 (347)
T 3das_A          107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA  186 (347)
T ss_dssp             EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred             CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence            56666665541        11111   21 11123467999999987776432             355555554321  


Q ss_pred             -------cEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277          538 -------ECVRIFIGHRSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       538 -------~~~~~~~~h~~~i~~l~~spdg~~l~s  564 (704)
                             ..+. -.+|.+ ...++|+|+|.+.++
T Consensus       187 ~~nPf~~~~i~-a~G~RN-p~Gla~dp~G~L~~~  218 (347)
T 3das_A          187 PGNPFPGSPVY-SYGHRN-VQGLAWDDKQRLFAS  218 (347)
T ss_dssp             TTCSSTTCCEE-EBCCSB-CCEEEECTTCCEEEE
T ss_pred             CCCCCCCCeEE-eeCCCC-cceEEECCCCCEEEE
Confidence                   1122 225543 457899998776554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.88  E-value=0.25  Score=59.51  Aligned_cols=202  Identities=11%  Similarity=0.224  Sum_probs=121.2

Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEE
Q 005277          359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILS  438 (704)
Q Consensus       359 fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s  438 (704)
                      .+|..+.||.-. ..+++|+|+......                            .... ...+|.-=.|-.+.. |+-
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~kl----------------------------ks~~-~~e~VvfWkWis~~~-l~l  121 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKM----------------------------KAHT-MTDDVTFWKWISLNT-VAL  121 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhh----------------------------cccc-cCCCceEEEecCCCe-eEE
Confidence            456666666553 678999998762111                            1111 124566666764443 443


Q ss_pred             EeCCCeEEEEeCCC-CceeEEeecC----CcCeeEEEEcCCCCEEEEEe-------CCCeEEEEECCCCceeEEeccCCC
Q 005277          439 SSADTTIRLWSTKL-NANLVCYKGH----NYPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAGHLS  506 (704)
Q Consensus       439 ~s~Dg~I~lwd~~~-~~~~~~~~~h----~~~V~~v~~sp~~~~l~sgs-------~dg~i~lwd~~~~~~~~~~~~~~~  506 (704)
                      .+ +..|.-|++.. ..++..+..|    ...|..-..+++.++++..|       -.|.+.+|+.+.. ..+.+.||..
T Consensus       122 VT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~  199 (1630)
T 1xi4_A          122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA  199 (1630)
T ss_pred             Ec-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHh
Confidence            33 34799999974 2344444444    45677778888888877554       4588999998764 3445566765


Q ss_pred             CeeEEEEc--C-CCCEEEEEEC---CCcEEEEeCCCC---c------EEEEeecC---CCCEEEEEEecCCCEEEEEeCC
Q 005277          507 DVDCVRWH--I-NCNYIATGSS---DKTVRLWDVSSG---E------CVRIFIGH---RSMILSLAMSPDGRYMASGDED  568 (704)
Q Consensus       507 ~V~~v~~~--p-~~~~l~tgs~---dg~I~iwd~~~~---~------~~~~~~~h---~~~i~~l~~spdg~~l~sg~~d  568 (704)
                      ....+...  + ..+.++.+..   .+.++|.++...   .      .+..+...   .+-..++..|+.-..+..-+.-
T Consensus       200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~  279 (1630)
T 1xi4_A          200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY  279 (1630)
T ss_pred             hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecC
Confidence            55444432  1 1233333322   368888888432   1      11112111   2334567888877788888999


Q ss_pred             CeEEEEeCCCCeeeeeecCCCceee
Q 005277          569 GTIMMWDLASGRCVTPLMGHTSCVW  593 (704)
Q Consensus       569 g~I~iwdl~~~~~~~~~~~h~~~V~  593 (704)
                      |.|+++|+.+|.++..-+-...+|.
T Consensus       280 G~~~~~d~~t~~~i~~~ris~~~iF  304 (1630)
T 1xi4_A          280 GYIHLYDLETGTCIYMNRISGETIF  304 (1630)
T ss_pred             ceEEEEecccchhhhhccccCCceE
Confidence            9999999999988765543444443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.81  E-value=0.043  Score=56.55  Aligned_cols=142  Identities=9%  Similarity=0.007  Sum_probs=85.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeecC-CcCeeEEEEc--CCCCEEEEE--eCCCeEEEEECCCCceeEEecc----C
Q 005277          434 DFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFN--PQGHYFASS--SHDRTARIWSMDRIQPLRIMAG----H  504 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~v~~s--p~~~~l~sg--s~dg~i~lwd~~~~~~~~~~~~----~  504 (704)
                      ..++.++.||.|.-+|..+|+....+... ..++....-.  +.+..++.+  +.||.+..++..++.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46889999999999999999999888754 1232221100  112234433  5899999999887754433321    1


Q ss_pred             CCCeeE----EEEc----CCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC--CC-----EEEEEEe-----cCCCEEEE
Q 005277          505 LSDVDC----VRWH----INCNYIATGSSDKTVRLWDVSSGECVRIFIGHR--SM-----ILSLAMS-----PDGRYMAS  564 (704)
Q Consensus       505 ~~~V~~----v~~~----p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~--~~-----i~~l~~s-----pdg~~l~s  564 (704)
                      .+++..    +...    ..+..+++|+.+|.+...|+++|+.+..+....  +.     ..|....     -.+..|+.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            122221    0000    145688999999999999999999999886331  11     1111111     12356777


Q ss_pred             EeCCCeEEEEe
Q 005277          565 GDEDGTIMMWD  575 (704)
Q Consensus       565 g~~dg~I~iwd  575 (704)
                      |..+..+.+.+
T Consensus       171 g~~~y~v~~~~  181 (339)
T 2be1_A          171 GKTIFELGIHS  181 (339)
T ss_dssp             EEEEEECEECC
T ss_pred             ecceEEEEEEC
Confidence            77766666666

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.80  E-value=0.17  Score=48.30  Aligned_cols=140  Identities=16%  Similarity=0.067  Sum_probs=83.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee------EEee--cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANL------VCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~------~~~~--~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~  494 (704)
                      .+..++|+|++.+.+.  .+|.+.-.+..+....      ..+-  +... ..++.|.|+|.+.++  .||.|+-++--+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            6779999998885555  6677666665442221      1111  1111 478999999998887  569888777532


Q ss_pred             Cce-------eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE------EEEe-ecCCCCEEEEEEecCCC
Q 005277          495 IQP-------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC------VRIF-IGHRSMILSLAMSPDGR  560 (704)
Q Consensus       495 ~~~-------~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~------~~~~-~~h~~~i~~l~~spdg~  560 (704)
                      ...       ..+-...-..+.+|.|.|+|.+.++.  |+.++-+...++..      ...+ .......+.+.|.|+|.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            111       11112223568999999999888777  77765544332211      1111 12233455577888887


Q ss_pred             EEEEEeCCCeE
Q 005277          561 YMASGDEDGTI  571 (704)
Q Consensus       561 ~l~sg~~dg~I  571 (704)
                      ..++.  +|.+
T Consensus       195 l~~v~--~g~~  203 (236)
T 1tl2_A          195 LFGVQ--GGKF  203 (236)
T ss_dssp             EEEEE--TTEE
T ss_pred             EEEEe--CCeE
Confidence            76665  6633

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.55  E-value=1.5  Score=44.13  Aligned_cols=140  Identities=9%  Similarity=0.066  Sum_probs=84.6

Q ss_pred             EEEcCCCCEEEEEeC--------------CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe----CCCeEE
Q 005277          427 ASFSPLGDFILSSSA--------------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----HDRTAR  488 (704)
Q Consensus       427 l~~sp~~~~l~s~s~--------------Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs----~dg~i~  488 (704)
                      --+++++.+|+-+..              ...|+..+++...... +...  +  +..|++++.+++-..    .+..|.
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceEE
Confidence            345788888875543              2467778887665333 2211  2  236777888887765    344566


Q ss_pred             EEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      ..+++.....+... +..    ..|+|+++.|+-.+. ...|...++..+...+.+.+   ... ..++|++.+|+-...
T Consensus       133 ~~~~dGs~~~~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~  203 (302)
T 3s25_A          133 RIRIDGEEKKKIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDV  203 (302)
T ss_dssp             EEETTSCCCEEEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEG
T ss_pred             EEECCCCCeEEEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEc
Confidence            66666544443333 322    345678888876654 67888888877665554432   222 346699998886654


Q ss_pred             C--CeEEEEeCCCCe
Q 005277          568 D--GTIMMWDLASGR  580 (704)
Q Consensus       568 d--g~I~iwdl~~~~  580 (704)
                      +  ..|..-++..+.
T Consensus       204 ~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          204 NRDNAIVHVNINNPN  218 (302)
T ss_dssp             GGTTEEEEECSSSCC
T ss_pred             CCCcEEEEEECCCCC
Confidence            3  356666766544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.20  E-value=7.7  Score=46.75  Aligned_cols=150  Identities=10%  Similarity=0.043  Sum_probs=87.1

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-eecCCcCeeEEEEcCC------CCEEEEEeC-CCeEEEEECC
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQ------GHYFASSSH-DRTARIWSMD  493 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~------~~~l~sgs~-dg~i~lwd~~  493 (704)
                      ..|...+.+  +.+++.++ ++.+.++.++.++.... -..-...|.|+++.|.      +.++++|.+ |++++|+++.
T Consensus       514 ~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~  590 (1158)
T 3ei3_A          514 KNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP  590 (1158)
T ss_dssp             CCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence            356666655  34566665 57888888776532211 1123567999999863      478999997 9999999999


Q ss_pred             CCceeEEecc-CCCCeeEEEEc--CCCCEEEEEECCCcEEEEeC--CCCcEEE---EeecCCCCEEEEEEecCCCEEEEE
Q 005277          494 RIQPLRIMAG-HLSDVDCVRWH--INCNYIATGSSDKTVRLWDV--SSGECVR---IFIGHRSMILSLAMSPDGRYMASG  565 (704)
Q Consensus       494 ~~~~~~~~~~-~~~~V~~v~~~--p~~~~l~tgs~dg~I~iwd~--~~~~~~~---~~~~h~~~i~~l~~spdg~~l~sg  565 (704)
                      ..+.+....- ......++.+.  ....+|.+|-.||.+.-+.+  .+|....   .+.| ..++.=..+...|..-+.+
T Consensus       591 ~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a  669 (1158)
T 3ei3_A          591 SFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFA  669 (1158)
T ss_dssp             TCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEE
T ss_pred             CCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEE
Confidence            8766644332 11233444332  24468899999998765544  4554432   2223 2344444444444433333


Q ss_pred             eCCCeEEEEe
Q 005277          566 DEDGTIMMWD  575 (704)
Q Consensus       566 ~~dg~I~iwd  575 (704)
                      ..+.-..++-
T Consensus       670 ~s~rp~liy~  679 (1158)
T 3ei3_A          670 CSDRPTVIYS  679 (1158)
T ss_dssp             ESSSCEEEEE
T ss_pred             ECCCCEEEEE
Confidence            3344444443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.15  E-value=0.27  Score=50.57  Aligned_cols=141  Identities=13%  Similarity=0.037  Sum_probs=79.4

Q ss_pred             eCCCeEEEEeCCCCceeEEeec----CCcCeeE---EEE-----cCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC-
Q 005277          440 SADTTIRLWSTKLNANLVCYKG----HNYPVWD---VQF-----NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-  506 (704)
Q Consensus       440 s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~---v~~-----sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~-  506 (704)
                      +.||.|..++..+|.....+..    ...|+..   ...     ...+..+++|+.+|.+...|+.+++.+..+..... 
T Consensus        64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~  143 (339)
T 2be1_A           64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKN  143 (339)
T ss_dssp             STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBC
T ss_pred             CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCc
Confidence            5788898888887754443321    1222221   000     01456788999999999999999999988863311 


Q ss_pred             ------CeeEEEEc-----CCCCEEEEEECCCcEEEEeCCCCcEEEEe-----ecCCCC--E-EEEEEecCCCEEEEEeC
Q 005277          507 ------DVDCVRWH-----INCNYIATGSSDKTVRLWDVSSGECVRIF-----IGHRSM--I-LSLAMSPDGRYMASGDE  567 (704)
Q Consensus       507 ------~V~~v~~~-----p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-----~~h~~~--i-~~l~~spdg~~l~sg~~  567 (704)
                            ...|....     ..+..|+.|..+..+.+.+ ++|+ +..+     ......  + .+-..+.|+.+ +.++.
T Consensus       144 ~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~  220 (339)
T 2be1_A          144 GYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFR  220 (339)
T ss_dssp             C--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEET
T ss_pred             ccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECC
Confidence                  01122111     1235677777777777776 4553 2211     111000  0 00001124666 45788


Q ss_pred             CCeEEEEeCCCCeeee
Q 005277          568 DGTIMMWDLASGRCVT  583 (704)
Q Consensus       568 dg~I~iwdl~~~~~~~  583 (704)
                      ||.|.-+|..+|..+-
T Consensus       221 dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          221 DKSLLASDLDFRIARW  236 (339)
T ss_dssp             TTEEEEECSTTCCEEE
T ss_pred             CCEEEEEECCCCcEEE
Confidence            9999999999888765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.03  E-value=0.71  Score=47.54  Aligned_cols=26  Identities=23%  Similarity=0.229  Sum_probs=16.1

Q ss_pred             CCCCEEEEEeCCC------cEEEEeCCCCccc
Q 005277          633 CEGSLLASGSADC------TVKLWDVTTSTKV  658 (704)
Q Consensus       633 ~~g~~lasgs~Dg------~V~iWd~~~~~~~  658 (704)
                      .++.+++.||.++      .|.++++++++..
T Consensus       315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred             eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence            3567888888653      3556688776543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.01  E-value=6.6  Score=44.97  Aligned_cols=190  Identities=10%  Similarity=0.088  Sum_probs=111.7

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      ..|.|+....+| .|.+|+.+| +..||..+..-..                            ........|.++.. .
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~----------------------------~~~~~~~~i~~i~~-~  111 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ----------------------------PETDFPTDVRTMAL-Q  111 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC----------------------------CSCCCCSCEEEEEE-E
T ss_pred             ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC----------------------------cccCCCceEEEEEe-c
Confidence            458888777666 566677666 6788865411000                            00001224666654 3


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEee-----cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc---
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYK-----GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---  503 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~-----~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~---  503 (704)
                      ++ .|..++.+ -+..++..+++.. .+.     .....|.++....+|.+. .|+.+ -+..++..+.+.......   
T Consensus       112 ~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~  186 (758)
T 3ott_A          112 GD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIY-VGTYN-GLCRYIPSNGKFEGIPLPVHS  186 (758)
T ss_dssp             TT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEE-EEETT-EEEEEETTTTEEEEECCCCCT
T ss_pred             CC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEE-EEeCC-CHhhCccCCCceEEecCCCcc
Confidence            44 46666666 5788888765432 331     123468888888777654 45554 477788766543222111   


Q ss_pred             --CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          504 --HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       504 --~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                        ....|.++...+++..|..|+. +-+..+|..+++...........|.++....+|.+.+ |+.+ -+.+++..+++
T Consensus       187 ~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~  262 (758)
T 3ott_A          187 SQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTP  262 (758)
T ss_dssp             TCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSC
T ss_pred             ccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCc
Confidence              1224788887777776666764 4688899877654332212234588888887887554 4444 47888876654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.96  E-value=0.78  Score=55.38  Aligned_cols=240  Identities=11%  Similarity=0.141  Sum_probs=129.9

Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEeccC---
Q 005277          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGH---  504 (704)
Q Consensus       429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-~~~~~~~~~~---  504 (704)
                      .+|..+.++.=. ..++.|+|+++...+..+.- ..+|.--.|-... .++..+ +..|.-|++.. ..|+..|..|   
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L  148 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL  148 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence            456666555443 57899999998888877664 3456556665443 333332 46899999974 4566666655   


Q ss_pred             -CCCeeEEEEcCCCCEEEEEE-------CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec--CCCEEEE-Ee---CCCe
Q 005277          505 -LSDVDCVRWHINCNYIATGS-------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP--DGRYMAS-GD---EDGT  570 (704)
Q Consensus       505 -~~~V~~v~~~p~~~~l~tgs-------~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp--dg~~l~s-g~---~dg~  570 (704)
                       ...|..-..+++.++++..+       ..|.+.+|.+..+. .+.+.||.+.-..+....  ....|++ +.   ..+.
T Consensus       149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k  227 (1630)
T 1xi4_A          149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK  227 (1630)
T ss_pred             ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCce
Confidence             45677777788888887543       45788999886543 233556655443333321  1112222 21   1268


Q ss_pred             EEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277          571 IMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL  649 (704)
Q Consensus       571 I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i  649 (704)
                      ++|-++... ..-..   .......+.|.+             .....+.       ...-+|+.-.++...+.-|.|++
T Consensus       228 Lhi~Ei~~~~~~~~~---f~kk~~~~~~~~-------------~~~~Dfp-------v~~~vs~k~g~iy~itk~G~~~~  284 (1630)
T 1xi4_A          228 LHIIEVGTPPTGNQP---FPKKAVDVFFPP-------------EAQNDFP-------VAMQISEKHDVVFLITKYGYIHL  284 (1630)
T ss_pred             EEEEecCCCccCCCC---CccccccccCCc-------------ccccCcc-------eEEEeccccCEEEEEecCceEEE
Confidence            888887542 11011   111111111100             0000000       01111666778888889999999


Q ss_pred             EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                      +|+.++..+....-...  . --+.......+.|.  ..++.|++|.++-.+
T Consensus       285 ~d~~t~~~i~~~ris~~--~-iF~~~~~~~~~g~~--~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          285 YDLETGTCIYMNRISGE--T-IFVTAPHEATAGII--GVNRKGQVLSVCVEE  331 (1630)
T ss_pred             EecccchhhhhccccCC--c-eEEeccCCCCCceE--EEcCCceEEEEEEcc
Confidence            99999887644321111  0 01111222233443  345777777665443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.46  E-value=2.3  Score=48.38  Aligned_cols=150  Identities=8%  Similarity=0.065  Sum_probs=81.2

Q ss_pred             CCCEEEEEeCC------CeEEEEeCCCCceeE--EeecCCcCeeEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeEEe
Q 005277          432 LGDFILSSSAD------TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLRIM  501 (704)
Q Consensus       432 ~~~~l~s~s~D------g~I~lwd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~sgs~dg--~i~lwd~~~~~~~~~~  501 (704)
                      ++..++.|+.+      ..+.+||..+.+-..  .+..... -.+++...++..++.|+.++  .+.+||..+..-...-
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            56666676643      347888887643221  1111111 12233324788888887654  6899998876433221


Q ss_pred             c-----cCCCCeeEEEEcCC-CCEEEEEEC--C-----CcEEEEeCCCCcE-----EEEeec---CCCCEEEEEEecCCC
Q 005277          502 A-----GHLSDVDCVRWHIN-CNYIATGSS--D-----KTVRLWDVSSGEC-----VRIFIG---HRSMILSLAMSPDGR  560 (704)
Q Consensus       502 ~-----~~~~~V~~v~~~p~-~~~l~tgs~--d-----g~I~iwd~~~~~~-----~~~~~~---h~~~i~~l~~spdg~  560 (704)
                      .     .......++.+..+ +.+++.|+.  +     ..+.+||+.+...     ......   ....-.+++...+++
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~  609 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK  609 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence            1     11122233555555 667777765  2     4588999988761     111111   111112333333477


Q ss_pred             EEEEEeCC--------CeEEEEeCCCCeee
Q 005277          561 YMASGDED--------GTIMMWDLASGRCV  582 (704)
Q Consensus       561 ~l~sg~~d--------g~I~iwdl~~~~~~  582 (704)
                      .++.||.+        ..|.+||+.+.+..
T Consensus       610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            77777743        45888888876543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.39  E-value=3.2  Score=45.11  Aligned_cols=71  Identities=11%  Similarity=0.111  Sum_probs=52.1

Q ss_pred             CeeEEEEcCCCCEEEEEE-CCCcEEEEeCCC------CcE-------EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277          507 DVDCVRWHINCNYIATGS-SDKTVRLWDVSS------GEC-------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (704)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~------~~~-------~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~  572 (704)
                      ....+..+|+|+++++++ -+.+|.++|++.      ++.       +.... -.-.....+|.++|....+..-|..|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEE
Confidence            345688899999998866 578899999873      111       22222 234567899999996666777999999


Q ss_pred             EEeCCC
Q 005277          573 MWDLAS  578 (704)
Q Consensus       573 iwdl~~  578 (704)
                      -|++..
T Consensus       403 kWni~~  408 (638)
T 3sbq_A          403 KWNMEE  408 (638)
T ss_dssp             EEEHHH
T ss_pred             EEeccH
Confidence            999864

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.25  E-value=1.2  Score=50.91  Aligned_cols=150  Identities=9%  Similarity=0.046  Sum_probs=80.6

Q ss_pred             CCCCEEEEEeCC----CeEEEEeCCCCceeEEe-e------cCCcCeeEEEEcC-CCCEEEEEeCC------CeEEEEEC
Q 005277          431 PLGDFILSSSAD----TTIRLWSTKLNANLVCY-K------GHNYPVWDVQFNP-QGHYFASSSHD------RTARIWSM  492 (704)
Q Consensus       431 p~~~~l~s~s~D----g~I~lwd~~~~~~~~~~-~------~h~~~V~~v~~sp-~~~~l~sgs~d------g~i~lwd~  492 (704)
                      .++..++.|+.+    ..+.+||..+++-...- .      .....-.+++..+ ++..++.||.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            346666666643    45788888765433222 1      1111112333333 67788888744      35778888


Q ss_pred             CCCceeEEeccCCCC-eeEEEEcCCCCEEEEEECCC--cEEEEeCCCCcEEEEee-----cCCCCEEEEEEecC-CCEEE
Q 005277          493 DRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDK--TVRLWDVSSGECVRIFI-----GHRSMILSLAMSPD-GRYMA  563 (704)
Q Consensus       493 ~~~~~~~~~~~~~~~-V~~v~~~p~~~~l~tgs~dg--~I~iwd~~~~~~~~~~~-----~h~~~i~~l~~spd-g~~l~  563 (704)
                      .+.+-...-...... -.+++...++.+++.|+.++  .+.+||..++.-...-.     .......++.+..+ ++.++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            775332221111111 11223324778888887654  79999998775433211     11122233555555 66777


Q ss_pred             EEeC--C-----CeEEEEeCCCCe
Q 005277          564 SGDE--D-----GTIMMWDLASGR  580 (704)
Q Consensus       564 sg~~--d-----g~I~iwdl~~~~  580 (704)
                      .||.  +     +.+.+||+.+..
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCc
Confidence            7765  2     358888887765

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.08  E-value=3.8  Score=40.75  Aligned_cols=144  Identities=12%  Similarity=0.034  Sum_probs=76.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~  502 (704)
                      .|..++...... ++. . ||.|..|-......+-.-..-...|..|+....  +.+.-. ||.|..|-......+....
T Consensus        64 ~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~  137 (282)
T 3qhy_B           64 GVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPA  137 (282)
T ss_dssp             CCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred             CEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCc
Confidence            566676654333 333 4 899999976644332211111346777776533  333334 8999999775532221112


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                      .....|..++.-.+.  .+.-. ||.|+.|-......+..-..-...|..++...+  +.++- .||.|..|=...
T Consensus       138 ~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~  207 (282)
T 3qhy_B          138 EAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNR  207 (282)
T ss_dssp             GGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCT
T ss_pred             cCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCC
Confidence            233456666654332  22233 799999976532111111111245777766433  22333 589999997543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.07  E-value=5.5  Score=39.99  Aligned_cols=138  Identities=8%  Similarity=0.034  Sum_probs=82.9

Q ss_pred             EEcCCCCEEEEEe----CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEEec
Q 005277          428 SFSPLGDFILSSS----ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRIMA  502 (704)
Q Consensus       428 ~~sp~~~~l~s~s----~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg~i~lwd~~~~~~~~~~~  502 (704)
                      .|++++++|+-+.    .+..|...+++. .....+..+..    ..|+|+++.|+-.+. ...|..-+++.....+.+.
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~  184 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD  184 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC
Confidence            6777888888554    344566666663 33444444432    345667777765554 6788888888766555544


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEECC--CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe--CCCeEEEEeCCC
Q 005277          503 GHLSDVDCVRWHINCNYIATGSSD--KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLAS  578 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~d--g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~--~dg~I~iwdl~~  578 (704)
                      +   ... ..++|++.+|+-....  ..|..-++..+. ...+..  ..+  ..|+|+|.+|+.+.  ..+.|..-++..
T Consensus       185 ~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          185 C---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             S---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             C---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence            2   222 3456999888876644  356666765544 333432  233  34888898887653  235666666654


Q ss_pred             C
Q 005277          579 G  579 (704)
Q Consensus       579 ~  579 (704)
                      .
T Consensus       256 ~  256 (302)
T 3s25_A          256 T  256 (302)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.82  E-value=5.6  Score=43.18  Aligned_cols=206  Identities=11%  Similarity=0.121  Sum_probs=108.2

Q ss_pred             EEEEeCCCcEEEEEcccCCccccccccCCCCCCC--Cc---ccccCCCCCccceeeccCCccCeEEEEEc---CCCCEEE
Q 005277          366 VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTT--PR---EDIIGPNGRKRSYTLYQGHSGPVYSASFS---PLGDFIL  437 (704)
Q Consensus       366 lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~h~~~V~~l~~s---p~~~~l~  437 (704)
                      +.+|+..|.|+|+-+.++................  -.   ..+...   ...+..-..|.   ..+++.   -||+||+
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~---~~~~~~gD~HH---p~~S~tdg~yDGrylf  146 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGD---SAKFLNGDCHH---PHISMTDGKYDGKYLF  146 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGG---GGGCCCCCCCC---CEEEEETTEEEEEEEE
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhc---CCCccCCCcCC---CcccccCCeeeeEEEE
Confidence            6788889999999988765544333222111100  00   000000   00011111121   123332   2567777


Q ss_pred             EEe-CCCeEEEEeCCCCceeEEee-cCCcCeeEEEEc--CCCCEEEEEeC-------CCeE---------EE---EECCC
Q 005277          438 SSS-ADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFN--PQGHYFASSSH-------DRTA---------RI---WSMDR  494 (704)
Q Consensus       438 s~s-~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~s--p~~~~l~sgs~-------dg~i---------~l---wd~~~  494 (704)
                      .-. .+..|-..+++..++-..+. .....+.++.|-  |+-.|++.++.       ||..         .+   .|.++
T Consensus       147 iNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~t  226 (638)
T 3sbq_A          147 INDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAET  226 (638)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTT
T ss_pred             EecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCc
Confidence            665 56778888999888766554 245668888886  67778887763       3321         11   12222


Q ss_pred             CceeEEeccCCCCeeEEEEcCCCCEEEEEECCC---------------cEEEEe-------------------------C
Q 005277          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK---------------TVRLWD-------------------------V  534 (704)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---------------~I~iwd-------------------------~  534 (704)
                      .+....+.- .+....+...+++.+.++.+.+.               .|.+++                         .
T Consensus       227 m~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~  305 (638)
T 3sbq_A          227 MEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDG  305 (638)
T ss_dssp             CSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred             cEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcc
Confidence            222211111 12344455567788877766331               234444                         3


Q ss_pred             CC----CcEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCC
Q 005277          535 SS----GECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS  578 (704)
Q Consensus       535 ~~----~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~  578 (704)
                      +.    +..+..+..-......+.++|||+++++++ .+.++.++|+..
T Consensus       306 ~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k  354 (638)
T 3sbq_A          306 RKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDK  354 (638)
T ss_dssp             SCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             ccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeeh
Confidence            32    111111112223456788999999988765 678999999874

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=90.64  E-value=0.27  Score=38.99  Aligned_cols=30  Identities=23%  Similarity=0.427  Sum_probs=27.2

Q ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Q 005277            3 ELQVVEFVATYLKKKGFSEAENALQAEIQR   32 (704)
Q Consensus         3 ~~~~~~~v~~yl~~~~~~~~~~~~~~e~~~   32 (704)
                      .++|+++|++||...||..+-++||.|+..
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~   39 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAEL   39 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcC
Confidence            368999999999999999999999999653

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=88.56  E-value=20  Score=35.33  Aligned_cols=144  Identities=15%  Similarity=0.065  Sum_probs=76.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~  502 (704)
                      .|..++..... .++. . ||.|..|-......+..-......|..|+..... .++. . ||.+..|-......+..-.
T Consensus        25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred             CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence            46666665332 2333 4 8999999766443322111123367777765333 3333 4 8999999876432221111


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                      .-...|..|+...+  ..+.-. +|.|+.|-....-.+..-......|..++...+  +.+.-. ||.|..|-...
T Consensus        99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~  168 (282)
T 3qhy_B           99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNY  168 (282)
T ss_dssp             GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCT
T ss_pred             ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCC
Confidence            12346777766544  333344 999999976532111111112345666665432  333334 78899987553

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.63  E-value=32  Score=36.64  Aligned_cols=30  Identities=20%  Similarity=-0.037  Sum_probs=22.6

Q ss_pred             CCEEEEEEcCCCC-EEEEEeCCCcEEEEEcc
Q 005277          352 NGLNCASISQDGS-LVAGGFSDSSLKVWDMA  381 (704)
Q Consensus       352 ~~V~~~~fs~dg~-~lasg~~dg~I~iwdl~  381 (704)
                      ..-..|+|.|||+ .|+++...|.|++++..
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            4567899999996 45556688999998643

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=82.08  E-value=1.6  Score=34.74  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=32.4

Q ss_pred             CchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCC
Q 005277            1 MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSS   36 (704)
Q Consensus         1 ~~~~~~~~~v~~yl~~~~~~~~~~~~~~e~~~~~~~   36 (704)
                      ++.+++|.+|-.||+.-||..|--+|..|+...+..
T Consensus         3 itsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~   38 (90)
T 2xtc_A            3 ITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSN   38 (90)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence            367899999999999999999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	704
d2nxpa1	149	d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human	3e-52
d2j4ba1	131	d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Enceph	8e-50
d2j49a1	134	d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Sacch	2e-47
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-43
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-37
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-35
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-32
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-35
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-24
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-17
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-34
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-26
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-22
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-19
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-25
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-20
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-24
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-23
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-22
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-21
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-19
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-21
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-18
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-21
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-16
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-20
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-18
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-15
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-19
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-19
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-16
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-17
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-14
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-17
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-10
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-17
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-15
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-15
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-17
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-13
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-13
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-17
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-14
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-16
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-16
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-16
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-13
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-13
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-14
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-12
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-10
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-10
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-10
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-07
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	5e-10
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-07
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.001
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	2e-04
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	8e-04
d1jofa_	365	b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactoniz	0.004

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  175 bits (445), Expect = 3e-52
 Identities = 43/148 (29%), Positives = 79/148 (53%), Gaps = 1/148 (0%)

Query: 47  DPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVA 106
            P++S     +   +  P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +++LV 
Sbjct: 1   QPDVSAVLSAY-NQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVY 59

Query: 107 KGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYS 166
             H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++I + S
Sbjct: 60  NQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS 119

Query: 167 YELLLQYLHKTQSTKMLGIINERINFQV 194
           Y+LL ++L + Q+ ++  I+ E +   +
Sbjct: 120 YQLLKRHLQEKQNNQIWNIVQEHLYIDI 147

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

 Score =  168 bits (427), Expect = 8e-50
 Identities = 42/131 (32%), Positives = 82/131 (62%), Gaps = 1/131 (0%)

Query: 67  YQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEM 126
            +  Y  L++W   SLDL+K++LL +LYP+FIH + DL+ +    EA+ FF  +R DH  
Sbjct: 2   METSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY- 60

Query: 127 MHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGII 186
               ++++ E + +  H+ E  FA++ ++SK ++ + +Y+++LL+ +L +   T +L I+
Sbjct: 61  NKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKIL 120

Query: 187 NERINFQVSPG 197
           N+ ++ +V  G
Sbjct: 121 NQHLDIKVYVG 131

>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} Length = 134

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  161 bits (410), Expect = 2e-47
 Identities = 45/134 (33%), Positives = 80/134 (59%), Gaps = 4/134 (2%)

Query: 64  PARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFRED 123
           P  Y   YS L++W  SSL++YK EL +++YP+FI+ F++LVAK     AR FF+ F  D
Sbjct: 1   PENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNP-VYARRFFDRFSPD 59

Query: 124 HEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---T 180
            +  H  ++ +L  V S  H++E E A + +  K  I + + +  LLL +L++ +S   +
Sbjct: 60  FKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGS 119

Query: 181 KMLGIINERINFQV 194
            ++ +IN+ ++  +
Sbjct: 120 LIISVINQHLDPNI 133

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  157 bits (398), Expect = 1e-43
 Identities = 73/341 (21%), Positives = 126/341 (36%), Gaps = 68/341 (19%)

Query: 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE--------- 395
           Y      + +         S++     D+++KVWD      +    G             
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 396 -----NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
                + +      +             GH   V S S  P GD I+S+S D TI++W  
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510
           +    +  + GH   V  V+ N  G   AS S+D+T R+W +   +    +  H   V+C
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

Query: 511 VRWHINCNYIA--------------------TGSSDKTVRLWDVSSGECVRIFIGHRSMI 550
           + W    +Y +                    +GS DKT+++WDVS+G C+   +GH + +
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKI 610
             +     G+++ S  +D T+ +WD  + RC+  L  H   V +L +             
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF------------- 297

Query: 611 SDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD 651
                                      + +GS D TVK+W+
Sbjct: 298 ---------------------HKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  140 bits (353), Expect = 1e-37
 Identities = 83/297 (27%), Positives = 126/297 (42%), Gaps = 31/297 (10%)

Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV 466
           P   ++ Y L  GH  PV    F P+   ++S+S D TI++W  +        KGH   V
Sbjct: 5   PRPPEK-YAL-SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 62

Query: 467 WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD 526
            D+ F+  G   AS S D T ++W     + +R M GH  +V  V    N ++I + S D
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122

Query: 527 KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586
           KT+++W+V +G CV+ F GHR  +  +  + DG  +AS   D T+ +W +A+  C   L 
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

Query: 587 GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT 646
            H   V  +++                 S+       T      +   G  L SGS D T
Sbjct: 183 EHRHVVECISWAP--------------ESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228

Query: 647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
           +K+WDV+T                  L TL      V  + F        + A  KT
Sbjct: 229 IKMWDVSTG---------------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 270

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  134 bits (338), Expect = 2e-35
 Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 2/161 (1%)

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           + GH+G V S S +P     +S + D + +LW  +       + GH   +  + F P G+
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239

Query: 477 YFASSSHDRTARI--WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV 534
            FA+ S D T R+     D+          +  +  V +  +   +  G  D    +WD 
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

Query: 535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
              +   +  GH + +  L ++ DG  +A+G  D  + +W+
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  124 bits (312), Expect = 6e-32
 Identities = 60/352 (17%), Positives = 104/352 (29%), Gaps = 93/352 (26%)

Query: 397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL 456
             T   D +G    +   TL +GH   +Y+  +      ++S+S D  + +W +     +
Sbjct: 32  QITNNIDPVGRIQMRTRRTL-RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV 90

Query: 457 VCYKGHNYPVWDVQFNPQGHYFASSS---------------------------------- 482
                 +  V    + P G+Y A                                     
Sbjct: 91  HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150

Query: 483 -----------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
                       D T  +W ++  Q      GH  DV  +    +     +G+ D + +L
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210

Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC 591
           WDV  G C + F GH S I ++   P+G   A+G +D T  ++DL + + +         
Sbjct: 211 WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270

Query: 592 VWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD 651
               +  F                                S  G LL +G  D    +WD
Sbjct: 271 CGITSVSF--------------------------------SKSGRLLLAGYDDFNCNVWD 298

Query: 652 VTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
              + +                  L      V  L  +   +  A G+    
Sbjct: 299 ALKADRA---------------GVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.6 bits (192), Expect = 3e-16
 Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 28/234 (11%)

Query: 483 HDRTARIWSMDRIQ--PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV 540
              T  I  + RIQ    R + GHL+ +  + W  +   + + S D  + +WD  +   V
Sbjct: 31  SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV 90

Query: 541 RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV-----------TPLMGHT 589
                  S +++ A +P G Y+A G  D    +++L +                 L    
Sbjct: 91  HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150

Query: 590 SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649
                         T A   I     T         +     + +  L  SG+ D + KL
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210

Query: 650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
           WDV                     +T     + + ++ F      FA G+   T
Sbjct: 211 WDVREG---------------MCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  134 bits (338), Expect = 6e-35
 Identities = 65/359 (18%), Positives = 116/359 (32%), Gaps = 100/359 (27%)

Query: 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY 414
            C   S DG  +A G  + + +V+ ++     A  S     N           +    + 
Sbjct: 66  CCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAAN----------KDPENLNT 114

Query: 415 TLYQGHSGPVYSASFSPLGDFILSSS---------------------------------- 440
           +        + S  FSP G F+ + +                                  
Sbjct: 115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 174

Query: 441 --------ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492
                    D T+R+W  +     +     +           G Y A+ S DR  R+W  
Sbjct: 175 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 234

Query: 493 DR-------IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE------- 538
           +                GH   V  V +  +   + +GS D++V+LW++ +         
Sbjct: 235 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294

Query: 539 -----CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW 593
                C   +IGH+  +LS+A + +  Y+ SG +D  ++ WD  SG  +  L GH + V 
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 354

Query: 594 TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652
           ++A                                     E ++ A+GS DC  ++W  
Sbjct: 355 SVAV----------------------------ANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (257), Expect = 2e-24
 Identities = 59/317 (18%), Positives = 115/317 (36%), Gaps = 61/317 (19%)

Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTK------------------LNANLVCYK 460
            H+  V    FS  G+++ +   + T +++                      N N     
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
             +  +  V F+P G + A+ + DR  RIW ++  + + I+ GH  D+  + +  + + +
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580
            +GS D+TVR+WD+ +G+C         +        DG+Y+A+G  D  + +WD  +G 
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 581 CVTPLM-------GHTSCVWTLAY-----RFLLLVTNAYLKISDKVSTGFLFYSLT---- 624
            V  L        GH   V+++ +       +    +  +K+ +  +      S T    
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 625 -----------IIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSL 673
                       +     +     + SGS D  V  WD  +   +               
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL--------------- 343

Query: 674 KTLPTKSTPVYSLQFSR 690
             L      V S+  + 
Sbjct: 344 LMLQGHRNSVISVAVAN 360

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.5 bits (202), Expect = 2e-17
 Identities = 62/331 (18%), Positives = 119/331 (35%), Gaps = 46/331 (13%)

Query: 414 YTLYQGHSGPVYSASFSPLGD---FILSSSADTTIRLWSTK----LNANLVCYKGHNYPV 466
           Y     HS P+               L    +    L++      ++  L     H   V
Sbjct: 6   YNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVV 65

Query: 467 WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG------------------HLSDV 508
             V+F+  G Y A+   ++T +++ +     +  ++                       +
Sbjct: 66  CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 124

Query: 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568
             V +  +  ++ATG+ D+ +R+WD+ + + V I  GH   I SL   P G  + SG  D
Sbjct: 125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 184

Query: 569 GTIMMWDLASGRCVTPLMGHTSCVWTLAY-----RFLLLVTNAYLKISDKVSTGFLFYSL 623
            T+ +WDL +G+C   L                        +  +++ D   TGFL   L
Sbjct: 185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD-SETGFLVERL 243

Query: 624 TI-----------IYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 672
                        +Y    + +G  + SGS D +VKLW++  +     ++  +       
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV- 302

Query: 673 LKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
             T       V S+  ++ +    +G+  + 
Sbjct: 303 --TYIGHKDFVLSVATTQNDEYILSGSKDRG 331

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.5 bits (202), Expect = 2e-17
 Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405
           +     + +     ++DG  V  G  D S+K+W++     ++ S                
Sbjct: 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT----- 303

Query: 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP 465
                      Y GH   V S + +   ++ILS S D  +  W  K    L+  +GH   
Sbjct: 304 -----------YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 352

Query: 466 VWDV------QFNPQGHYFASSSHDRTARIWSMDRI 495
           V  V         P+ + FA+ S D  ARIW   +I
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 1e-34
 Identities = 80/343 (23%), Positives = 135/343 (39%), Gaps = 64/343 (18%)

Query: 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW 467
            G  +S  + +GH   V +      G+ I+S S D T+++WS      L    GH   VW
Sbjct: 3   RGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61

Query: 468 DVQFNP--------------------------------------QGHYFASSSHDRTARI 489
             Q                                               S S D T R+
Sbjct: 62  SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV 121

Query: 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM 549
           W ++  Q L ++ GH++ V C     +   + +G+ D  V++WD  +  C+    GH + 
Sbjct: 122 WDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179

Query: 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVT---NA 606
           + S  +  DG ++ SG  D +I +WD+ +G C+  L GH S    +  +  +LV+   ++
Sbjct: 180 VYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADS 237

Query: 607 YLKISDKVSTGFLFYSLT----IIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662
            +KI D  +   L              C     + + + S D TVKLWD+ T   +    
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI---- 293

Query: 663 EKSGTNRLRSLKTLPTK--STPVYSLQFSRRNLLFAAGALSKT 703
                   R+L TL +      V+ ++ S   L+ A G+ + T
Sbjct: 294 --------RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 1e-26
 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 14/170 (8%)

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
            QGH+  VYS  F   G  ++S S DT+IR+W  +    +    GH      ++     +
Sbjct: 173 LQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--N 228

Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVS 535
              S + D T +IW +   Q L+ + G       V     N N++ T S D TV+LWD+ 
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288

Query: 536 SGECVRIFI-----GHRSMILSLAMSPDGRYMASGDEDGT----IMMWDL 576
           +GE +R  +     G   ++  +  S      A G  +GT    +++ D 
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (241), Expect = 1e-22
 Identities = 44/228 (19%), Positives = 92/228 (40%), Gaps = 48/228 (21%)

Query: 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493
             ++S + D  +++W  +    L   +GH   V+ +QF+  G +  S S D + R+W ++
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVE 205

Query: 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILS 552
               +  + GH S    +      N + +G++D TV++WD+ +G+C++     ++     
Sbjct: 206 TGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 263

Query: 553 LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-----GHTSCVWTLAYRFLLLVTNAY 607
             +  +  ++ +  +DGT+ +WDL +G  +  L+     G    VW +            
Sbjct: 264 TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA---------- 313

Query: 608 LKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT----VKLWD 651
                                   S    + A GS + T    + + D
Sbjct: 314 ------------------------SNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (213), Expect = 6e-19
 Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 43/211 (20%)

Query: 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM 549
           W    ++  +++ GH   V         N I +GS D T+++W   +G+C+R  +GH   
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 550 ILSLAMSPD--------------------------------------GRYMASGDEDGTI 571
           + S  M  +                                       + + SG  D T+
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119

Query: 572 MMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAY---LKISDKVSTGFLF-YSLTIIY 627
            +WD+ +G+C+  LMGH + V  + Y    +V+ AY   +K+ D  +   L         
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179

Query: 628 FGCASCEGSLLASGSADCTVKLWDVTTSTKV 658
                 +G  + SGS D ++++WDV T   +
Sbjct: 180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCI 210

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (261), Expect = 1e-25
 Identities = 64/328 (19%), Positives = 114/328 (34%), Gaps = 62/328 (18%)

Query: 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE-------- 395
            +    T  G+ C  +  D   +  G  D+++K+WD   L  + + +G  G         
Sbjct: 8   IHCRSETSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 396 --NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN 453
               T   +  +          L                   +++ S D +I +W     
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 454 ANLVCYKGHNY-PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
            ++   +            +    Y  S+S DRT ++W+    + +R + GH   + C  
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC-- 183

Query: 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
                  + +GSSD T+RLWD+  G C+R+  GH    L   +  D + + SG  DG I 
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFDNKRIVSGAYDGKIK 241

Query: 573 MWDLASG---------RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL 623
           +WDL +           C+  L+ H+  V+ L +                          
Sbjct: 242 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-------------------------- 275

Query: 624 TIIYFGCASCEGSLLASGSADCTVKLWD 651
                     +   + S S D T+ +WD
Sbjct: 276 ----------DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.7 bits (223), Expect = 1e-20
 Identities = 57/284 (20%), Positives = 106/284 (37%), Gaps = 55/284 (19%)

Query: 456 LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI 515
           + C    +  V+ +Q++       S   D T +IW  + ++  RI+ GH   V C+++  
Sbjct: 8   IHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 516 N--------------------------------------CNYIATGSSDKTVRLWDVSSG 537
                                                     + T S D+++ +WD++S 
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 538 ECV---RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWT 594
             +   R+ +GHR+ +  +         ASG  D TI +W+ ++   V  L GH   +  
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGIAC 183

Query: 595 LAYRFLLLVTNAY---LKISDKVSTGFL-FYSLTIIYFGCASCEGSLLASGSADCTVKLW 650
           L YR  L+V+ +    +++ D      L           C   +   + SG+ D  +K+W
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 243

Query: 651 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL 694
           D+  +                 L+TL   S  V+ LQF    ++
Sbjct: 244 DLVAALDPRAPAGT------LCLRTLVEHSGRVFRLQFDEFQIV 281

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (166), Expect = 3e-13
 Identities = 34/171 (19%), Positives = 70/171 (40%), Gaps = 11/171 (6%)

Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA 554
           +Q +   +     V C+++  +   I +G  D T+++WD ++ EC RI  GH   +L   
Sbjct: 5   LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC-- 60

Query: 555 MSPDGRYMASGDEDGTIMMWDLASG---RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKIS 611
           +  D R + +G  D T+ +WD+ +G     +         +       +    +  + + 
Sbjct: 61  LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 120

Query: 612 DKVSTGFLFYSLTIIY----FGCASCEGSLLASGSADCTVKLWDVTTSTKV 658
           D  S   +     ++           +   + S S D T+K+W+ +T   V
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV 171

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (251), Expect = 8e-24
 Identities = 51/395 (12%), Positives = 106/395 (26%), Gaps = 106/395 (26%)

Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
           ++++F+     ++C + ++D + +A   ++  + +++ +                     
Sbjct: 1   AYHSFL--VEPISCHAWNKDRTQIAICPNNHEVHIYEKS--------------------- 37

Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWS------------- 449
                  +       + H+G V    ++P  + I++   D    +W+             
Sbjct: 38  -----GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL 92

Query: 450 -----------------------------------TKLNANLVCYKGHNYPVWDVQFNPQ 474
                                                        K     V  + ++P 
Sbjct: 93  RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN 152

Query: 475 GHYFASSSHDRTARIWSMDRIQPLRIM------------------AGHLSDVDCVRWHIN 516
               A+ S D   RI+S    +                       +     V  V +  N
Sbjct: 153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 212

Query: 517 CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
            + +A  S D TV L D      V         +L++    +   +A+G  D   +++  
Sbjct: 213 GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTY 271

Query: 577 ASGRCVTPLMGHTSCVWTLAYR-------FLLLVTNAYLKISDKVSTGFLFYSLTIIYFG 629
            S        G        + R       F  L   A  + S     G        +   
Sbjct: 272 DSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQI 331

Query: 630 CASCEG----SLLASGSADCTVKLWDVTTSTKVLK 660
                G    S   +   D  + +WDV +    LK
Sbjct: 332 SVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 366

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =   99 bits (247), Expect = 3e-23
 Identities = 39/294 (13%), Positives = 83/294 (28%), Gaps = 35/294 (11%)

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLW--STKLNANLVCYKGHNYPVWDVQFNPQ 474
           +     P+   +++     I     +  + ++  S      +   K HN  V  V + P 
Sbjct: 3   HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 475 GHYFASSSHDRTARIWSMDRIQPLRIMAGH--LSDVDCVRWHINCNYIATGSSDKTVRLW 532
            +   +   DR A +W++        +          CVRW  N    A GS  + + + 
Sbjct: 63  SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122

Query: 533 DVSSGECVRIFIGHRSM----ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
                    +    +      +LSL   P+   +A+G  D    ++              
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 182

Query: 589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFG------------------- 629
                      +   +++   +     +        + +                     
Sbjct: 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE 242

Query: 630 -------CASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL 676
                      E SL+A+G  DC   L+   ++   L    +    +  S + L
Sbjct: 243 TLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 295

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 6/78 (7%), Positives = 23/78 (29%), Gaps = 13/78 (16%)

Query: 626 IYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS 685
           I     + + + +A    +  V +++ +              N+   +  L   +  V  
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSG-------------NKWVQVHELKEHNGQVTG 56

Query: 686 LQFSRRNLLFAAGALSKT 703
           + ++  +         + 
Sbjct: 57  VDWAPDSNRIVTCGTDRN 74

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (241), Expect = 1e-22
 Identities = 17/119 (14%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 458 CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC 517
                   ++ + + P G + A         +  +++      +  H S V  +++    
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCG 277

Query: 518 NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
            +  +   D  +  W    G  +       S +LS  +S D +Y+ +G  D    ++++
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.7 bits (231), Expect = 3e-21
 Identities = 48/343 (13%), Positives = 85/343 (24%), Gaps = 101/343 (29%)

Query: 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK 411
             +   +IS     V  G     +KVWD++                          N   
Sbjct: 52  EVVCAVTISNPTRHVYTG-GKGCVKVWDISH-----------------------PGNKSP 87

Query: 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSAD--TTIRLWSTKLNANLVCYKGHNYPVWDV 469
            S          + S    P G  ++        +I   +                 + +
Sbjct: 88  VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147

Query: 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
             +P      S   D    +W +     +R   GH     C+    +   + TG  D TV
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207

Query: 530 RLWDVSSGECVR----------------------------------------IFIGHRSM 549
           R WD+  G  ++                                            H S 
Sbjct: 208 RSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC 267

Query: 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLK 609
           +LSL  +  G++  S  +D  +  W    G  +      +S V +               
Sbjct: 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDI------------ 314

Query: 610 ISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652
                                 S +   + +GS D    +++V
Sbjct: 315 ----------------------SVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (216), Expect = 2e-19
 Identities = 50/311 (16%), Positives = 94/311 (30%), Gaps = 34/311 (10%)

Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC-----YKG 461
           P   ++  TL   H   V + + S     + +      +++W      N           
Sbjct: 39  PRHARQINTL--NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLN 95

Query: 462 HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW--HINCNY 519
            +  +   +  P G          T  IW +    P        S   C       +   
Sbjct: 96  RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155

Query: 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
             +  SD  + +WD+ +   VR F GH      + +S DG  + +G  D T+  WDL  G
Sbjct: 156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215

Query: 580 RCVTPLMGHTSCVWTLA------YRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA-S 632
           R +      TS +++L       +  + + ++    +       +  +           +
Sbjct: 216 RQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA 274

Query: 633 CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 692
             G    S   D  +  W       + +++E S                 V S   S  +
Sbjct: 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS----------------SVLSCDISVDD 318

Query: 693 LLFAAGALSKT 703
                G+  K 
Sbjct: 319 KYIVTGSGDKK 329

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 8e-12
 Identities = 18/186 (9%), Positives = 42/186 (22%), Gaps = 8/186 (4%)

Query: 420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
            S P YS   +  G    +    D  I     + +A  +    H   V  V  +    + 
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR-HARQINTLNHGEVVCAVTISNPTRHV 66

Query: 479 ASSSHDRTARIWSMD-----RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
            +       ++W +                  + +   +   +   +  G    T+ +WD
Sbjct: 67  YTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125

Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW 593
           +++           S     A++                +                    
Sbjct: 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 185

Query: 594 TLAYRF 599
                 
Sbjct: 186 ASCIDI 191

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.3 bits (235), Expect = 2e-21
 Identities = 39/320 (12%), Positives = 85/320 (26%), Gaps = 79/320 (24%)

Query: 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL------NANLVCYKGHNYPVWD 468
              + H   ++S S      F +S S D  +++W  KL            +  H   +  
Sbjct: 8   NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 469 VQF-------NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH------- 514
           V           +    A++S       + + R    + +     D+             
Sbjct: 66  VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125

Query: 515 --------INCNYIATGSSDKTVRLWDVSSGE------------------CVRIFIGHRS 548
                   +  + +       T  +W                         V   +    
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185

Query: 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY----------- 597
              S+ +S  G  +A+G  +GT+ + +L++ R +       S +                
Sbjct: 186 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244

Query: 598 -------------------RFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL 638
                               F   + +  +      ++   F   + +     +  G  L
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304

Query: 639 ASGSADCTVKLWDVTTSTKV 658
            S   D  ++ WDV T  ++
Sbjct: 305 CSAGWDGKLRFWDVKTKERI 324

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.7 bits (210), Expect = 2e-18
 Identities = 37/341 (10%), Positives = 92/341 (26%), Gaps = 67/341 (19%)

Query: 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY 414
                + +  LVA       L  + + +  +       + +   +               
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDS--------------- 115

Query: 415 TLYQGHSGPVYSASFSPLGD-----FILSSSADTTIRLWST------------------K 451
                     ++  +    D      ++++    T  +W                    +
Sbjct: 116 ---DMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 172

Query: 452 LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS------MDRIQPLRIMAGHL 505
           L   +      +     V  + +G   A+  ++ T +I        +   +    M  + 
Sbjct: 173 LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS 231

Query: 506 SDVDCVRWHINCNYIATGSSDKTV---RLWD-------------VSSGECVRIFIGHRSM 549
           + +  V++    + +A      +     L++               S +       H S 
Sbjct: 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 291

Query: 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLK 609
           ++SL+ +  G  + S   DG +  WD+ +   +T L  H   +        +      L 
Sbjct: 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351

Query: 610 ISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLW 650
                   FL         G  +     L     D +++ +
Sbjct: 352 EPGVFDVKFLK---KGWRSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 4e-10
 Identities = 20/165 (12%), Positives = 42/165 (25%), Gaps = 23/165 (13%)

Query: 539 CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYR 598
                  H + I S++      +  S   DG + +WD        P            ++
Sbjct: 6   TANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPK---DKSYSHFVHK 60

Query: 599 FLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV 658
             L   +    I                     + E  L+A+ S    +  + +T   + 
Sbjct: 61  SGLHHVDVLQAIERD------------------AFELCLVATTSFSGDLLFYRITREDET 102

Query: 659 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
            K   +        +K     +    +      +    A  +  T
Sbjct: 103 KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT 147

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 19/133 (14%)

Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV 466
           P    ++      HS  V S SF+  G+ + S+  D  +R W  K    +     H   +
Sbjct: 275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 334

Query: 467 ----WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
                 +  +  G   A         ++ +  ++                       +  
Sbjct: 335 EIEEDILAVDEHGDSLAEPG------VFDVKFLK---------KGWRSGMGADLNESLCC 379

Query: 523 GSSDKTVRLWDVS 535
              D+++R +  +
Sbjct: 380 VCLDRSIRWFREA 392

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 93.8 bits (231), Expect = 3e-21
 Identities = 19/192 (9%), Positives = 48/192 (25%), Gaps = 18/192 (9%)

Query: 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-------K 460
           +   R        +   Y+ +F      +   S  +        +               
Sbjct: 165 DMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIP 224

Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRWHIN 516
                    +  P+     +  +D          I       R++    S +      ++
Sbjct: 225 LIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH 284

Query: 517 CN---YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
                Y         +  +DV + +        ++ +  L +S D + +    +DG I  
Sbjct: 285 GEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYT 340

Query: 574 WDLASGRCVTPL 585
           + L        +
Sbjct: 341 FPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 78.4 bits (191), Expect = 3e-16
 Identities = 28/365 (7%), Positives = 69/365 (18%), Gaps = 83/365 (22%)

Query: 348 INTHNGLNCASISQDGSLVA--GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405
           +     +       D  +    G      L ++D      +     L          +  
Sbjct: 39  VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGK 98

Query: 406 G-----------------------PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD 442
                                      R+   T +       + A   PL          
Sbjct: 99  FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 158

Query: 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW-------SMDRI 495
             I ++  +           N   +   F+         S+              S + +
Sbjct: 159 QAIHVYDMEGRKI-FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 217

Query: 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLW-------DVSSGECVRIFIGHRS 548
               ++       +  +          G  D             D      +        
Sbjct: 218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277

Query: 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYL 608
           +           Y     E G ++ +D+ + +    +    + +  L             
Sbjct: 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRL----------- 322

Query: 609 KISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTN 668
                                  S +   +     D  +  + +         +E++   
Sbjct: 323 -----------------------SADRKTVMVRKDDGKIYTFPLEK-----PEDERTVET 354

Query: 669 RLRSL 673
             R L
Sbjct: 355 DKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 63.7 bits (153), Expect = 2e-11
 Identities = 30/281 (10%), Positives = 62/281 (22%), Gaps = 36/281 (12%)

Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH 483
            ++  FSPL   +++  +     +    ++   V        +  V+             
Sbjct: 5   KFAEDFSPLDGDLIAFVSRGQAFIQD--VSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGT 62

Query: 484 DRTARIWSMD-RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI 542
                +   D R         +L +V  +    N  +    +    +   D+ +G+   I
Sbjct: 63  REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122

Query: 543 FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLL 602
                +MI    +S + R++A G                    M                
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS--- 179

Query: 603 VTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662
                                   Y      +   L   S        D        +  
Sbjct: 180 ----------------------HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 217

Query: 663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
            K           +P         +   R++   AG     
Sbjct: 218 SK--------PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN 250

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.6 bits (220), Expect = 7e-20
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 23/198 (11%)

Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           +GH   V +       +++++ + D  IR++ +     L+   GH+  VW +++   G  
Sbjct: 9   RGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67

Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLS-DVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
            + S+                     + +     +  + N  YI TGS D T+ +W +  
Sbjct: 68  VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127

Query: 537 GECVRIFIGHRSMILSLAMSPD---------------------GRYMASGDEDGTIMMWD 575
              V          L      +                     G  + SG  D T+++WD
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWD 187

Query: 576 LASGRCVTPLMGHTSCVW 593
           +A  +C+  L GHT  ++
Sbjct: 188 VAQMKCLYILSGHTDRIY 205

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.4 bits (204), Expect = 7e-18
 Identities = 61/376 (16%), Positives = 116/376 (30%), Gaps = 72/376 (19%)

Query: 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGR 410
           H       +  + + V  G  D  ++V+D                              +
Sbjct: 11  HMTSVITCLQFEDNYVITGADDKMIRVYDSIN---------------------------K 43

Query: 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWD 468
           K    L  GH G V++  ++  G  ++S S      +         ++           D
Sbjct: 44  KFLLQL-SGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 101

Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLR---------------------IMAGHLSD 507
           +       Y  + S D T  +W + +   +                      +       
Sbjct: 102 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161

Query: 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567
                   + N + +GS D T+ +WDV+  +C+ I  GH   I S     + +   S   
Sbjct: 162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM 221

Query: 568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY 627
           D TI +WDL +G  +  L GHT+ V  L      LV+ A                 +  +
Sbjct: 222 DTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH 281

Query: 628 FG-----CASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP 682
                        ++L SGS +    ++++ +   V                 +   +  
Sbjct: 282 TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV--------------HANILKDADQ 326

Query: 683 VYSLQFSRRNLLFAAG 698
           ++S+ F  + L+ A  
Sbjct: 327 IWSVNFKGKTLVAAVE 342

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.5 bits (181), Expect = 7e-15
 Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 35/170 (20%)

Query: 496 QPLRI-MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA 554
            P R  + GH++ V         NY+ TG+ DK +R++D  + + +    GH   + +L 
Sbjct: 2   VPQRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60

Query: 555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKV 614
            +  G  ++   +    +               +++                        
Sbjct: 61  YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC--------------------- 99

Query: 615 STGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK 664
                                  + +GS D T+ +W +   + V    E+
Sbjct: 100 ------------LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 137

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.6 bits (176), Expect = 3e-14
 Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 6/136 (4%)

Query: 442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501
           DTTIR+W  +                 +    +       S      I   D     R  
Sbjct: 222 DTTIRIWDLENG----ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF 277

Query: 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGR 560
           + H +++  +      + I    S+    ++++ SG+ V    +     I S+       
Sbjct: 278 SYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-T 336

Query: 561 YMASGDEDGTIMMWDL 576
            +A+ ++DG   +  L
Sbjct: 337 LVAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.2 bits (167), Expect = 4e-13
 Identities = 45/290 (15%), Positives = 91/290 (31%), Gaps = 47/290 (16%)

Query: 367 AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             G  D++L VW + K              +         P        + +GH   V +
Sbjct: 112 VTGSRDNTLHVWKLPKESSVPDHGE-----EHDYPLVFHTPEENPYFVGVLRGHMASVRT 166

Query: 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
              S  G+ ++S S D T+ +W       L    GH   ++   ++ +     S+S D T
Sbjct: 167 --VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224

Query: 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
            RIW ++  + +  + GH + V  +R        A           +       +    H
Sbjct: 225 IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND---YSRKFSYHH 281

Query: 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV-TPLMGHTSCVWTLAYRFLLLVTN 605
            ++            + SG  +    +++L SG+ V   ++     +W++ ++       
Sbjct: 282 TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK------- 333

Query: 606 AYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655
                                         +L+A+   D    L  +  S
Sbjct: 334 ----------------------------GKTLVAAVEKDGQSFLEILDFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 2e-05
 Identities = 10/105 (9%), Positives = 28/105 (26%), Gaps = 29/105 (27%)

Query: 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403
                +  N     +     +++  G S++   +++        + SG            
Sbjct: 275 RKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYN--------LRSG------------ 313

Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLW 448
                  K  +      +  ++S +F      + +   D    L 
Sbjct: 314 -------KLVHANILKDADQIWSVNFKG-KTLVAAVEKDGQSFLE 350

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.8 bits (213), Expect = 4e-19
 Identities = 15/182 (8%), Positives = 48/182 (26%), Gaps = 24/182 (13%)

Query: 433 GDFILSSSADTTIRLWS----TKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488
              ++    ++ ++ +        N  +                 +   +A SS D    
Sbjct: 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVA 219

Query: 489 IWSMD---------------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
           +   D                 +           V+ + +     ++ T  SD  +  W+
Sbjct: 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279

Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW 593
           + + + ++ F         + ++     +     D T              +  + S ++
Sbjct: 280 LQTRKKIKNFAKFNE-DSVVKIACSDNILCLATSDDTFKTN----AAIDQTIELNASSIY 334

Query: 594 TL 595
            +
Sbjct: 335 II 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.8 bits (213), Expect = 6e-19
 Identities = 30/300 (10%), Positives = 74/300 (24%), Gaps = 41/300 (13%)

Query: 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLW---STKLNANLVCYKGHNYPVWDVQF 471
            + Q     +      P    +L +S D ++ ++       N +L+    + +P+    F
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 472 NPQG--HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
                   +  +      ++  +       +     +   C       + +   S D  +
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

Query: 530 RLWDVSSGECVRIFIGHRS------MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
            + D  +     I + + +            M  +   +  G  +  +  + L       
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184

Query: 584 PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643
             +  +   +                               I        E    A  S 
Sbjct: 185 GTIEESGLKY------------------------------QIRDVALLPKEQEGYACSSI 214

Query: 644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
           D  V +           + ++      R        + PV S++FS R+           
Sbjct: 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI 274

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.7 bits (192), Expect = 3e-16
 Identities = 31/347 (8%), Positives = 77/347 (22%), Gaps = 61/347 (17%)

Query: 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK 411
           + ++   I    SL+     D SL V+                               + 
Sbjct: 12  DYISDIKIIPSKSLLLITSWDGSLTVYKFDI-------------------------QAKN 46

Query: 412 RSYTLYQGHSGPVYSASFSPLGDFIL--SSSADTTIRLWSTKLNANLVCYKGHNYPVWDV 469
                   +  P+   +F    D  +   +     +++      +               
Sbjct: 47  VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICR 106

Query: 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS----- 524
                     ++S D    +          I   +L+  +    +         S     
Sbjct: 107 ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG 166

Query: 525 -SDKTVRLWDVSSGECVRIFIGHRS----MILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
            ++  V+ + +   E     I        +     +  +    A    DG + +      
Sbjct: 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226

Query: 580 ---------------RCVTPLMGHTSCVWTLAY-----RFLLLVTNAYLKISDKVSTGFL 619
                          R           V ++ +           ++  +   + + T   
Sbjct: 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN-LQTRKK 285

Query: 620 FYSLTI---IYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 663
             +            +C  ++L   ++D T K       T  L    
Sbjct: 286 IKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASS 332

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 11/103 (10%), Positives = 35/103 (33%), Gaps = 4/103 (3%)

Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMIL 551
           +Q ++I       +  ++   + + +   S D ++ ++          +   + ++  +L
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 552 SLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW 593
                 +    +  G   G I+  DL        L  + + + 
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLG 103

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 4e-12
 Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 20/166 (12%)

Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWS------------- 449
            +        +             A      +    SS D  + +               
Sbjct: 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235

Query: 450 --TKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507
              + +   +      YPV  ++F+P+  +  ++  D     W++   + ++  A    D
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED 295

Query: 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL 553
              V+   + N +   +SD T +          +    + S I  +
Sbjct: 296 S-VVKIACSDNILCLATSDDTFKTN----AAIDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 1e-10
 Identities = 7/63 (11%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL---MGHTSCVWT 594
           + V+I    +  I  + + P    +     DG++ ++          L   + +   +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 595 LAY 597
             +
Sbjct: 62  CNF 64

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 82.0 bits (200), Expect = 1e-17
 Identities = 35/293 (11%), Positives = 83/293 (28%), Gaps = 22/293 (7%)

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG 475
             GH+  + + S S  G  + S+ A+  I  W      +  V    H   +  ++   +G
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67

Query: 476 HYFASSSHDRTARIW-SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD- 533
             F  S  D    +      +   + +A  LS             IA  +  K + ++  
Sbjct: 68  DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127

Query: 534 -------VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586
                  +S           +  +                   + +   +      +   
Sbjct: 128 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 187

Query: 587 GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT 646
            +         +   ++  +     +   T    +    +     S +   LA+GS D +
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247

Query: 647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699
           V +W++   +      + +               + V S+ +     + +AG 
Sbjct: 248 VIVWNMNKPSDHPIIIKGAHAM------------SSVNSVIWLNETTIVSAGQ 288

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 72.7 bits (176), Expect = 1e-14
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV-TPLMGHTSCVWTL 595
           G   ++  GH   I +L+ S DG+ + S D +G I  WD+++G         H + +  +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 596 AYRF 599
               
Sbjct: 62  KTTS 65

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.2 bits (172), Expect = 5e-14
 Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMS 556
            ++  GH   +  +    +   + +  ++  +  WD+S+G   R+F   H +MI  +  +
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRF 599
             G       +D   ++    SG   +  + +      L    
Sbjct: 65  SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 107

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.2 bits (172), Expect = 5e-14
 Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 2/124 (1%)

Query: 455 NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH 514
             + +      V              S       + +   +        H + V CV W 
Sbjct: 174 KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 233

Query: 515 INCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDEDGTIM 572
            +   +ATGS D +V +W+++      I I   H    ++  +  +   + S  +D  I 
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293

Query: 573 MWDL 576
            W++
Sbjct: 294 FWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 70.8 bits (171), Expect = 7e-14
 Identities = 34/321 (10%), Positives = 79/321 (24%), Gaps = 51/321 (15%)

Query: 351 HNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE-------------- 395
           HN  +   S S DG  +    ++  +  WD++      V   +                 
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70

Query: 396 ---NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL 452
               D   +    G +G   S  +    S      + S  GD  +++     I ++S   
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK 129

Query: 453 NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
              +      +                 S         +        +    ++ V    
Sbjct: 130 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 189

Query: 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
                             + +         +  H + +  ++ SPD   +A+G  D +++
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249

Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS 632
           +W++        ++     +                                        
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMS--------------------------------SVNSVIW 277

Query: 633 CEGSLLASGSADCTVKLWDVT 653
              + + S   D  +K W+V 
Sbjct: 278 LNETTIVSAGQDSNIKFWNVP 298

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 81.8 bits (200), Expect = 2e-17
 Identities = 35/319 (10%), Positives = 76/319 (23%), Gaps = 66/319 (20%)

Query: 333 HLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL 392
            +    LP+          +G   A  S   S +A G     ++V+D   L   A     
Sbjct: 43  MIDGGFLPNPVV-----ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP 97

Query: 393 QGENDTT---PREDIIGPNGRKRSYTLYQG---------------------------HSG 422
                     P    + P+G+   +  +                              + 
Sbjct: 98  DAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA 157

Query: 423 PVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS 481
           P         G     +   + T  +  T++           + +    ++ +       
Sbjct: 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWP 212

Query: 482 SHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD------------- 526
           ++        +     + L  +           W                          
Sbjct: 213 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE 272

Query: 527 -------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM--ASGDEDGTIMMWDLA 577
                  + V + D  +GE +         I S+ +S D + +  A    D T+ + D  
Sbjct: 273 WRHKTASRFVVVLDAKTGERLA-KFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 331

Query: 578 SGRCVTPLMGHTSCVWTLA 596
           SG  +  +         + 
Sbjct: 332 SGEELRSVNQLGHGPQVIT 350

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.0 bits (141), Expect = 8e-10
 Identities = 9/85 (10%), Positives = 28/85 (32%), Gaps = 12/85 (14%)

Query: 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA----------SGDEDG 569
            A  ++     + D  +G  + +  G      +  ++ DG ++A           G+   
Sbjct: 21  PAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTD 78

Query: 570 TIMMWDLASGRCVTPLMGHTSCVWT 594
            + ++D  +      +    +  + 
Sbjct: 79  YVEVFDPVTLLPTADIELPDAPRFL 103

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.0 bits (133), Expect = 7e-09
 Identities = 16/169 (9%), Positives = 38/169 (22%), Gaps = 25/169 (14%)

Query: 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDV--- 469
             +      +   ++S     ++  +    I                +            
Sbjct: 188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 247

Query: 470 -----------------QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
                                Q   +   +  R   +      + L        ++D + 
Sbjct: 248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSIN 306

Query: 513 WHINCNY--IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559
              +      A  + DKT+ + D  SGE +R           +  +  G
Sbjct: 307 VSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.2 bits (131), Expect = 1e-08
 Identities = 26/260 (10%), Positives = 53/260 (20%), Gaps = 59/260 (22%)

Query: 422 GPVYSASFSPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
            P    + +P    +  +     +A T   +   +    +    G   P  +      G 
Sbjct: 2   EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGS 59

Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           + A +S   +                                 IA G     V ++D  +
Sbjct: 60  FIAHASTVFS--------------------------------RIARGERTDYVEVFDPVT 87

Query: 537 GECVRIFIGHRSMILSLAMSPDG---------RYMASGDEDGTIMMWDLASGRCVTPLMG 587
                      +    +   P                      + + DL        L  
Sbjct: 88  LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 147

Query: 588 HTS----------CVWTLAYRFLLLVTNAYLKISDKVSTG-FLFYSLTIIYFGCASCEGS 636
                                 L  V        +   T  F      +I     S +  
Sbjct: 148 PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 207

Query: 637 LLASGSADCTVKLWDVTTST 656
            L   +    +   D+++  
Sbjct: 208 RLVWPTYTGKIHQIDLSSGD 227

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 79.9 bits (195), Expect = 7e-17
 Identities = 40/260 (15%), Positives = 72/260 (27%), Gaps = 22/260 (8%)

Query: 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS 481
           G       +P GD I   +  T++         +   Y  H++     + +P G+Y AS 
Sbjct: 18  GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 482 SHDRTARIW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYI------------------A 521
                 RIW  +         +      V  + W      I                   
Sbjct: 77  DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG 136

Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581
           T + + T +   ++S +                            +              
Sbjct: 137 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR 196

Query: 582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG 641
             P     +         L    +       +  +         ++    S +G+ +AS 
Sbjct: 197 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256

Query: 642 SADCTVKLWDVTTSTKVLKT 661
           SAD T+K+W+V T  KV KT
Sbjct: 257 SADKTIKIWNVATL-KVEKT 275

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 76.1 bits (185), Expect = 1e-15
 Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 1/120 (0%)

Query: 458 CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC 517
                 Y      F   G       ++      +            H   V  + W  + 
Sbjct: 191 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 250

Query: 518 NYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
             IA+ S+DKT+++W+V++ +  +   +G R     L +    + + S   +G I   + 
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 75.3 bits (183), Expect = 3e-15
 Identities = 49/369 (13%), Positives = 90/369 (24%), Gaps = 123/369 (33%)

Query: 337 AALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN 396
            +LP                   +  G  +    + +S+    +  L    +        
Sbjct: 10  PSLPRT-------ARGTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEI-------- 53

Query: 397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRL--WSTKLNA 454
                               Y  HS     A  SP G +  S      +R+   +   + 
Sbjct: 54  --------------------YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93

Query: 455 NLVCYKGHNYPV---------------------------------------------WDV 469
                   + PV                                                
Sbjct: 94  LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD 153

Query: 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
               +     S S D T  I+     +       H   V  VR++ + +  A+   D T+
Sbjct: 154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 213

Query: 530 RLWDVSSGECVRI-------FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
            L++   G    +        + H   +  L  SPDG  +AS   D TI +W++A+ +  
Sbjct: 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273

Query: 583 TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS 642
             +   T                      +    G ++                 L S S
Sbjct: 274 KTIPVGTR--------------------IEDQQLGIIW-------------TKQALVSIS 300

Query: 643 ADCTVKLWD 651
           A+  +   +
Sbjct: 301 ANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.5 bits (129), Expect = 2e-08
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYF 478
           HSG V+  ++SP G  I S+SAD TI++W+                    +         
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296

Query: 479 ASSSHDRTARIWSMD 493
            S S +      + +
Sbjct: 297 VSISANGFINFVNPE 311

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.2 bits (193), Expect = 7e-17
 Identities = 38/300 (12%), Positives = 87/300 (29%), Gaps = 32/300 (10%)

Query: 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD 468
           G         GH+  + + + +PL    +S S D  I  WS+        ++ H+  +  
Sbjct: 1   GHDEVLKTISGHNKGITALTVNPL----ISGSYDGRIMEWSSS-----SMHQDHSNLIVS 51

Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
           +  +    Y + S  D              +      ++        N + +    S   
Sbjct: 52  LDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG 111

Query: 529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
             +  V            ++ +       +   +    +               + +   
Sbjct: 112 DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS 171

Query: 589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF---------GCASCEGSLLA 639
            S  +  A   +  +    L+  +  ++ + F +  I                 E  L+A
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231

Query: 640 SGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699
           +GS D  + ++ V    K+              +K L      V +L +   + L ++GA
Sbjct: 232 TGSLDTNIFIYSVKRPMKI--------------IKALNAHKDGVNNLLWETPSTLVSSGA 277

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.2 bits (167), Expect = 2e-13
 Identities = 15/134 (11%), Positives = 36/134 (26%), Gaps = 2/134 (1%)

Query: 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502
            +  L +             +                              R   +  ++
Sbjct: 153 VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAIS 212

Query: 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRY 561
              ++       I  + +ATGS D  + ++ V    + ++    H+  + +L        
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST- 271

Query: 562 MASGDEDGTIMMWD 575
           + S   D  I  W+
Sbjct: 272 LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.8 bits (166), Expect = 2e-13
 Identities = 42/315 (13%), Positives = 83/315 (26%), Gaps = 53/315 (16%)

Query: 351 HNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409
           HN  +   +++    L++G   D  +  W  +    Q  S+ +   +++  +E       
Sbjct: 12  HNKGITALTVN---PLISGS-YDGRIMEWSSSS-MHQDHSNLIVSLDNSKAQEYSSISWD 66

Query: 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDV 469
                     H         S   D   +   +    L       +++     N P   V
Sbjct: 67  DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126

Query: 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
             +           +        D      +     +    +    +  YIA G     +
Sbjct: 127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186

Query: 530 RLWDVSSGECVRIFIGHRSMI-----------LSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            L+D+ S E        R+              +     +   +A+G  D  I ++ +  
Sbjct: 187 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246

Query: 579 -GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL 637
             + +  L  H   V  L +                                      S 
Sbjct: 247 PMKIIKALNAHKDGVNNLLW-----------------------------------ETPST 271

Query: 638 LASGSADCTVKLWDV 652
           L S  AD  +K W+V
Sbjct: 272 LVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 13/106 (12%), Positives = 28/106 (26%), Gaps = 28/106 (26%)

Query: 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403
                             +  LVA G  D+++ ++ + +  +                  
Sbjct: 208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI----------------- 250

Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWS 449
                           H   V +  +      ++SS AD  I+ W+
Sbjct: 251 ----------IKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 80.2 bits (196), Expect = 7e-17
 Identities = 26/293 (8%), Positives = 64/293 (21%), Gaps = 60/293 (20%)

Query: 348 INTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMA--KLGQQAVSSGLQGENDTTPREDI 404
           +    G   A ++ D             +   D+   K    A  S + GE   +     
Sbjct: 36  MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFA 95

Query: 405 IGPNGR-------------------------------KRSYTLYQGHS-GPVYSASFSPL 432
           I P+G+                                 +  +        VY    +  
Sbjct: 96  ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 155

Query: 433 GDFILSSSADTTIRLWSTKLNANLVCYKG----------------------HNYPVWDVQ 470
           G   ++      + + + K    L                            +      +
Sbjct: 156 GSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 215

Query: 471 FNPQGHYFASSSHDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
           F       A++          +   +   +  A                    G  +  +
Sbjct: 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RL 274

Query: 530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
             +D+   + ++           +A    G  +  G     + +++  +   V
Sbjct: 275 AKYDLKQRKLIK-AANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 73.6 bits (179), Expect = 1e-14
 Identities = 42/341 (12%), Positives = 91/341 (26%), Gaps = 52/341 (15%)

Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK------ 411
           ++      +      ++L V D+A      V       +   P   ++ P+ R       
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVAS---DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN 59

Query: 412 -------------------RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL 452
                                 ++       +YS + SP G  + ++   T        +
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119

Query: 453 NANLV----CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV 508
               +       G           P+  Y   ++ D +    +   I  + +  G  +  
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL-YVAGPDIYKMDVKTGKYTVA 178

Query: 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568
             +R      Y     +   +  W   S       +   +         D +  A+ D  
Sbjct: 179 LPLRNWNRKGYS----APDVLYFWPHQSPRHEFSMLYTIARF-----KDDKQDPATADLL 229

Query: 569 GTIMMWDLASGRCVTPLMG-HTSCVWTLAY----RFLLLVTNAYLKISDKVSTGFLFYSL 623
              +  DL +G+  T      T   +T          +      L   D +    L  + 
Sbjct: 230 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYD-LKQRKLIKAA 288

Query: 624 TI---IYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT 661
            +    Y      +G  L  G     + +++  T  + +K 
Sbjct: 289 NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKN 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 63.6 bits (153), Expect = 2e-11
 Identities = 20/192 (10%), Positives = 46/192 (23%), Gaps = 9/192 (4%)

Query: 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGR 410
              +     + DGSL   G     + V          + +  +                 
Sbjct: 144 PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW----- 198

Query: 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDV 469
               +     S     A F        ++           K    +   +       +  
Sbjct: 199 -PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG 257

Query: 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
             +P+         +R A+     R         H     CV +    + +  G +   +
Sbjct: 258 LRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDH--TYYCVAFDKKGDKLYLGGTFNDL 315

Query: 530 RLWDVSSGECVR 541
            +++  + E V+
Sbjct: 316 AVFNPDTLEKVK 327

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.4 bits (124), Expect = 8e-08
 Identities = 8/131 (6%), Positives = 28/131 (21%), Gaps = 8/131 (6%)

Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYI-ATGSSD 526
                   Y   +++     +  +      +  +              +        +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 527 KTVRLWDVSSGECVRIF------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580
             +   D+ + +                 + S A+SPDG+ + +       +        
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 581 CVTPLMGHTSC 591
               +      
Sbjct: 122 PRLEVFSTADG 132

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 1/46 (2%)

Query: 553 LAMSPDGRYMASGDEDGTIMMWDLASGRCV-TPLMGHTSCVWTLAY 597
            A+     YM   +    + + D+AS     + +M       T   
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMM 47

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.0 bits (190), Expect = 3e-16
 Identities = 41/298 (13%), Positives = 77/298 (25%), Gaps = 32/298 (10%)

Query: 420 HSGPVYSASFSPLGDFILSSSAD-TTIRLW--STKLNANLVCYKGHN-YPVWDVQFNPQ- 474
                   S+ P  + I         +R           +V + GH    V  V+F+P  
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 475 -GHYFASSSHDRTARIWSMD--------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSS 525
              Y  S        +W            +            +  + W      +     
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135

Query: 526 --DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
             D         SG  +    GH   I +  +       +    D   +++        +
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195

Query: 584 PLM----GHTSCVWTLAYRFLLLVTNAYLKISDKVST------------GFLFYSLTIIY 627
                     S V  + +          +    K+S                   +    
Sbjct: 196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255

Query: 628 FGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS 685
           F  +  +    A+  AD T+++WDVTTS  V K          + +  + T +  + S
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.0 bits (190), Expect = 4e-16
 Identities = 39/328 (11%), Positives = 75/328 (22%), Gaps = 97/328 (29%)

Query: 387 AVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTT 444
           A   G         R    G +            S  V +  FSP+    ++ S      
Sbjct: 33  AYPCG----KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK 88

Query: 445 IRLWSTKLNANLV--------CYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDR 494
           + +W    +             ++    P+ D+ ++ +G          D      S D 
Sbjct: 89  VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS 148

Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVR----LWDVSSGECVRIFIGHRSMI 550
              L  ++GH   ++      +    +    D                  R      S +
Sbjct: 149 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV 208

Query: 551 LSLAMSP----------------------------------------------DGRYMAS 564
             +  SP                                              D +  A+
Sbjct: 209 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFAT 268

Query: 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT 624
              D TI +WD+ + +CV         +                                
Sbjct: 269 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ---------------------------- 300

Query: 625 IIYFGCASCEGSLLASGSADCTVKLWDV 652
               G  +     + S S D T+  +++
Sbjct: 301 ---VGVVATGNGRIISLSLDGTLNFYEL 325

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 78.3 bits (191), Expect = 4e-16
 Identities = 19/276 (6%), Positives = 55/276 (19%), Gaps = 33/276 (11%)

Query: 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405
             I+   G     I              +    D   L        L+  +       + 
Sbjct: 59  VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118

Query: 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP 465
             +    S          +   +++  G  +     D  +          +      ++ 
Sbjct: 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEA--GTLVEDKPIQSWE 176

Query: 466 -----------------------VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-M 501
                                                 +++        ++  +     +
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236

Query: 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY 561
                       +          +   +  +D+     ++  +       S+ +S DG  
Sbjct: 237 RIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKNASIKR-VPLPHSYYSVNVSTDGST 293

Query: 562 MASGDEDGTIMMWDLASGRCV----TPLMGHTSCVW 593
           +  G   G +  +D  +         P     S   
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLAS 329

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 69.1 bits (167), Expect = 3e-13
 Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 518 NYIATGSSDKTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYM-ASGDEDGTIMMW 574
           +YI   +    + + D       ++          +   ++P GR   A+ ++  +++  
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 575 DLASGRCVTPLMGHTSCVWTLAYRFL 600
           DL +G  +  +   T      +    
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGA 87

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 68.3 bits (165), Expect = 5e-13
 Identities = 28/311 (9%), Positives = 65/311 (20%), Gaps = 48/311 (15%)

Query: 359 ISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
           ++  G    A      SL   D+              E               K      
Sbjct: 41  VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE 100

Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---------KGHNYPVWD 468
                 +      P    +  +   +  + +       ++ +          G +  V D
Sbjct: 101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMD 160

Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
            +           S +              +  +  +          + +     +    
Sbjct: 161 PEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220

Query: 529 VRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587
           +   D+ +GE              S A++P             +  +DL     +  +  
Sbjct: 221 LLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF--GAYNVLESFDLEKNASIKRV-P 277

Query: 588 HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV 647
                +++                                    S +GS +  G A   +
Sbjct: 278 LPHSYYSVNV----------------------------------STDGSTVWLGGALGDL 303

Query: 648 KLWDVTTSTKV 658
             +D  T  K 
Sbjct: 304 AAYDAETLEKK 314

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.9 bits (125), Expect = 5e-08
 Identities = 27/240 (11%), Positives = 56/240 (23%), Gaps = 32/240 (13%)

Query: 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYP--VWDVQFNPQGHY-FASSSHDRTARIW 490
           D+IL+ +    + +  T+  A        +           P G   +A+ +   +    
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 491 SMDRIQPLRIMAGHLSDVDCVRWHI-----NCNYIATGSSDKTVRLWDVSSGEC------ 539
            +   + L  +     +             +   +A   S   + L              
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 540 -----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWT 594
                 R        I  LA + DG  +     D  +M  +  +G  V      +     
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE--AGTLVEDKPIQSWEAE- 178

Query: 595 LAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT 654
                              V        +    F  A  +       +    +   D+ T
Sbjct: 179 ----------TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 73.5 bits (179), Expect = 2e-14
 Identities = 33/336 (9%), Positives = 75/336 (22%), Gaps = 51/336 (15%)

Query: 333 HLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL 392
           H   A L           H+G + A  S   +  A G     ++V+D             
Sbjct: 61  HSLGAFLSLAVA-----GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--------- 106

Query: 393 QGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTK 451
                  P  DI  P+  +            V+          +L      +     S  
Sbjct: 107 ------LPIADIELPDAPR------FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVP 154

Query: 452 LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA------GHL 505
             ++    K  +                  S   +     +        +          
Sbjct: 155 GASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211

Query: 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565
                 + +     +   +S         +         G+ S   +      G  M + 
Sbjct: 212 CSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271

Query: 566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI 625
            ++   +M                +   T +            + S  +S G    ++  
Sbjct: 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVG----------QTSGPISNGHDSDAIIA 321

Query: 626 IYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT 661
              G         A+ +    + ++D  +  +   +
Sbjct: 322 AQDG----ASDNYANSAGTEVLDIYDAASD-QDQSS 352

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 65.7 bits (158), Expect = 4e-12
 Identities = 26/256 (10%), Positives = 60/256 (23%), Gaps = 19/256 (7%)

Query: 348 INTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406
           I   +    A IS DG+ +       + + + D A     A               D   
Sbjct: 28  IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQ 87

Query: 407 PNGRKRSYTLY-------------QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN 453
                 + +                         + SP G  +  ++           + 
Sbjct: 88  VYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147

Query: 454 ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV---DC 510
             ++           +   P G     ++ D  +          +       +       
Sbjct: 148 KAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAV 207

Query: 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDG 569
                            TV + D  + +              +A++PDG+ +  +     
Sbjct: 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCN 266

Query: 570 TIMMWDLASGRCVTPL 585
           T+ + D A+      +
Sbjct: 267 TVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 61.0 bits (146), Expect = 1e-10
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWDLA 577
           YI   S    + + DV+S +         S  +   +SPDG  +  +      + + D A
Sbjct: 5   YI-ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62

Query: 578 SGRCVTPLMGHTSCVW 593
           +   +  +   +S   
Sbjct: 63  TNNVIATVPAGSSPQG 78

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 33/270 (12%), Positives = 75/270 (27%), Gaps = 16/270 (5%)

Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGH 462
           +I     K + T+    S P   A  SP G  +  +++    + +  T  N  +      
Sbjct: 16  VIDVTSNKVTATI-PVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG 73

Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
           + P            + ++    T  +           +    S +             T
Sbjct: 74  SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVT 133

Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
            + DKTV + +  +   +   +        +A++PDG  +   + D   +         V
Sbjct: 134 NNGDKTVSVINTVTKAVIN-TVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV 192

Query: 583 TPLMGHTSCV-------WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI---IYFGCAS 632
              +   +                  +             T  +   + +         +
Sbjct: 193 IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVT 252

Query: 633 CEGS-LLASGSADCTVKLWDVTTSTKVLKT 661
            +G  +  + S   TV + D  T+  +  T
Sbjct: 253 PDGKKVYVALSFCNTVSVIDTATN-TITAT 281

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.4 bits (161), Expect = 4e-12
 Identities = 20/210 (9%), Positives = 52/210 (24%), Gaps = 21/210 (10%)

Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---- 459
           +I  +  +    L  G++  V+ +  S  G ++     D  + +    +           
Sbjct: 46  LIDGSTYEIKTVLDTGYA--VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI 103

Query: 460 -KGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGHLSDVD-------- 509
                          +  Y  A +       I   + ++P +I +      D        
Sbjct: 104 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP 163

Query: 510 ----CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMAS 564
                +  H    +I        + L D +    ++   I     +    +    RY  +
Sbjct: 164 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFIT 223

Query: 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWT 594
                  ++        +  +         
Sbjct: 224 AANARNKLVVIDTKEGKLVAIEDTGGQTPH 253

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 61.3 bits (148), Expect = 2e-10
 Identities = 23/199 (11%), Positives = 50/199 (25%), Gaps = 24/199 (12%)

Query: 435 FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD- 493
           F ++      I L                      + +  G Y      D    +  +  
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYLFVIGRDGKVNMIDLWM 92

Query: 494 ----RIQPLRIMAGHLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIF----- 543
                +  ++I +   S            Y IA         + D  + E  +I      
Sbjct: 93  KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 152

Query: 544 ------IGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV---- 592
                       + ++  S     ++ +  E G I++ D      +              
Sbjct: 153 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG 212

Query: 593 -WTLAYRFLLLVTNAYLKI 610
               ++R+ +   NA  K+
Sbjct: 213 GLDGSHRYFITAANARNKL 231

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.0 bits (142), Expect = 9e-10
 Identities = 17/127 (13%), Positives = 34/127 (26%), Gaps = 12/127 (9%)

Query: 490 WSMDRIQPLR---IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
           + M  ++      +            W +   +  T      + L D S+ E   +    
Sbjct: 2   FGMKEMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG 61

Query: 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC-----VTPLMGHTSCVWTLAYRF-- 599
              +    +S  GRY+     DG + M DL          +       S   +    +  
Sbjct: 62  -YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED 120

Query: 600 -LLLVTN 605
              +   
Sbjct: 121 KYAIAGA 127

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.6 bits (133), Expect = 1e-08
 Identities = 35/333 (10%), Positives = 83/333 (24%), Gaps = 45/333 (13%)

Query: 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407
           ++T   ++ + +S  G  +     D  + + D+       V+    G             
Sbjct: 58  LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS------------ 105

Query: 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPV 466
                             S        + +  +       +   +               
Sbjct: 106 -----------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 154

Query: 467 WDVQFNPQGHYFA-SSSHDR---------TARIWSMDRIQP-----LRIMAGHLSDVDCV 511
            + +++P+    A  +SH R         T +I  +D           I A     +   
Sbjct: 155 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF--LHDG 212

Query: 512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571
               +  Y  T ++ +   +   +    +                 +  +   G    T 
Sbjct: 213 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATS 272

Query: 572 MMWDLASGRCVTPLMGHTSCVWTLAYR-FLLLVTNAYLKISDKVSTGFLFYSLTI---IY 627
            M D +     T   GH    W +      L   + ++K        ++  +L     I 
Sbjct: 273 HMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEIS 332

Query: 628 FGCASCEGSLLASGSADCTVKLWDVTTSTKVLK 660
              A  +   +    +D   K   +     + +
Sbjct: 333 GSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITE 365

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 61.5 bits (148), Expect = 1e-10
 Identities = 27/198 (13%), Positives = 55/198 (27%), Gaps = 21/198 (10%)

Query: 490 WSMDRIQP---LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
           W M  ++    + +              +   +  T      + L D  S + V++    
Sbjct: 2   WGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG 61

Query: 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC-----VTPLMGHTSCVWTLAYRF-- 599
            + +    MS  GRY+     D  I M DL +        +   +   S   +    +  
Sbjct: 62  YA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYED 120

Query: 600 -LLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG--------SADCTVKLW 650
              +    +      +  G       I+     + +               S +    + 
Sbjct: 121 RYTIAGAYWPPQFA-IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 179

Query: 651 DVTTSTKVLKTEEKSGTN 668
           +V  + KVL    K   N
Sbjct: 180 NVKETGKVLLVNYKDIDN 197

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 54.6 bits (130), Expect = 2e-08
 Identities = 17/166 (10%), Positives = 39/166 (23%), Gaps = 8/166 (4%)

Query: 435 FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD- 493
           F ++      I L        +             + +  G Y      D    +  +  
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDMIDLWA 92

Query: 494 ----RIQPLRIMAGHLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIFIGHRS 548
               ++  ++I     S            Y IA         + D  + E  +I      
Sbjct: 93  KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152

Query: 549 MILSLAMSPDGR-YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW 593
            + +    P+ R        +    + ++     V  +        
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL 198

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.1 bits (121), Expect = 2e-07
 Identities = 30/295 (10%), Positives = 79/295 (26%), Gaps = 53/295 (17%)

Query: 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN----------- 396
           I+T   ++ + +S  G  +     D+ + + D+       V+    G             
Sbjct: 58  IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG 117

Query: 397 ---------DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG------------DF 435
                       P +  I          +       V + ++ P              +F
Sbjct: 118 YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 177

Query: 436 ILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD- 493
           I++      + L + K   NL     G    + D  ++    YF +++++          
Sbjct: 178 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK 237

Query: 494 -----RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV-------RLWDVSSGECVR 541
                 +  +          + V       +  +   D ++       +     + + V 
Sbjct: 238 DRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 297

Query: 542 IFIGHRSMILSLAMSPDGRYMA-------SGDEDGTIMMWDLASGRCVTPLMGHT 589
              G     L +   P   ++              ++ ++DL +      ++   
Sbjct: 298 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA 352

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 30/260 (11%), Positives = 59/260 (22%), Gaps = 54/260 (20%)

Query: 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK 411
           N         DG+  +   S +     D   +         Q   D           G+ 
Sbjct: 135 NAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM-----DVAWQVIVDGNLDNTDADYTGKY 189

Query: 412 RSYTLYQGHSGPV------------------YSASFSPLGDFILSSSADTTIRLWSTKLN 453
            + T Y                           A+    G+F           +     +
Sbjct: 190 ATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD-SKVPVVDGRGES 248

Query: 454 ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW 513
                      P          ++ A+     T  + ++D++  L      +   D +  
Sbjct: 249 EFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL--FEDKIELRDTIVA 306

Query: 514 HIN-------------CNYIATGSSDKTVRLWDVSSGEC---------------VRIFIG 545
                            N   T   D  V  W+++                   V+   G
Sbjct: 307 EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPG 366

Query: 546 HRSMILSLAMSPDGRYMASG 565
           H    L+ +   DG+++   
Sbjct: 367 HNHASLTESRDADGKWLVVL 386

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 11/82 (13%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 519 YIATGSSDKTVRLWDVSSGECVRI--FIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWD 575
           YIA     + + +W+++    + +   +     +  + +SPD RY+      +  ++ + 
Sbjct: 7   YIA-SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 576 LASGRCVTPLMGHTSCVWTLAY 597
           +A           ++   +L +
Sbjct: 66  IAPDDGALTFAAESALPGSLTH 87

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 10/122 (8%), Positives = 38/122 (31%), Gaps = 6/122 (4%)

Query: 478 FASSSHDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDV 534
           + +S   +   +W+++    L +         V  +    +  Y+      +  V  + +
Sbjct: 7   YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66

Query: 535 SSGECVRIFIGHRSMILS---LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC 591
           +  +    F    ++  S   ++    G+++  G  +   +            ++     
Sbjct: 67  APDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG 126

Query: 592 VW 593
           + 
Sbjct: 127 LD 128

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 27/282 (9%), Positives = 66/282 (23%), Gaps = 48/282 (17%)

Query: 346 TFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404
             ++    +    +S D   L  G   +  +  + +A     A++   +     +     
Sbjct: 31  QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP-DDGALTFAAESALPGSLTHIS 89

Query: 405 IGPNGRKRSYTLY---------------------QGHSGPVYSASFSPLGDFILSSSADT 443
               G+      Y                            +SA+ SP    +   +   
Sbjct: 90  TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ 149

Query: 444 TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503
                 T  +   +  +            P+   F  +             +    +   
Sbjct: 150 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP 209

Query: 504 HLSDVDCVRWHINC-------------------NYIATGSSDKTVRLWDVSSGECVRIFI 544
           H +        +                     +  A   +   + ++ VS    V    
Sbjct: 210 HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE 269

Query: 545 GHRS---MILSLAMSPDGRYM-ASGDEDGTIMMW--DLASGR 580
           G +          +   G+Y+ A+G +   I ++      G 
Sbjct: 270 GFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 311

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 29/292 (9%), Positives = 68/292 (23%), Gaps = 27/292 (9%)

Query: 438 SSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDR 494
           +S     I +W+      L   +       V  +  +P   Y +     +     + +  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 495 IQPLRIMAGHLSDVDCVRW------HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS 548
                  A   +    +               +  + + +V   +      V   +    
Sbjct: 69  DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD 128

Query: 549 MILSLAMSPDGRYMASGDEDGTIMM-WDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAY 607
              S  +SPD R +         +  + ++    +             A    ++     
Sbjct: 129 GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 188

Query: 608 LKI---------------SDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652
                              D         +L ++    +    +     + D        
Sbjct: 189 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD 248

Query: 653 TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR-NLLFAAGALSKT 703
            T++ +         + L      PT++ P            L AAG  S  
Sbjct: 249 RTASLITVFSVSEDGSVLSKEGFQPTETQP-RGFNVDHSGKYLIAAGQKSHH 299

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 12/121 (9%), Positives = 39/121 (32%), Gaps = 6/121 (4%)

Query: 458 CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHI 515
               H      V  N +   F S +     ++++ +   ++ +         +       
Sbjct: 151 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSN 210

Query: 516 NCNYIATGSSDKTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
               IA   ++  + ++    G+ +         +    +A+  DG  + +  +D  + +
Sbjct: 211 GEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYI 268

Query: 574 W 574
           +
Sbjct: 269 Y 269

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 40.1 bits (92), Expect = 8e-04
 Identities = 18/141 (12%), Positives = 41/141 (29%), Gaps = 12/141 (8%)

Query: 457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN 516
           V     + P + +  N      ++    R    + +D+     I  G    +       +
Sbjct: 316 VGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSD 375

Query: 517 CNYIATGSSDKT--------VRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMA---S 564
             Y  +              ++L D +   C+       R    S++ S + +Y     S
Sbjct: 376 YLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS 435

Query: 565 GDEDGTIMMWDLASGRCVTPL 585
           G       +    + + +  L
Sbjct: 436 GPGLPLYTLHSSVNDKGLRVL 456

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Length = 365

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

 Score = 37.5 bits (86), Expect = 0.004
 Identities = 24/241 (9%), Positives = 57/241 (23%), Gaps = 18/241 (7%)

Query: 359 ISQDGSL--VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416
              +      A     SS  V    ++  +A            PR +    N R      
Sbjct: 47  FDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPI-----GGHPRANDADTNTRAIFLLA 101

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
            +     VY+  F     +    S   T +L     N         N  +  + F+P   
Sbjct: 102 AKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE----YQENTGIHGMVFDPTET 157

Query: 477 Y-FASSSHDRTARIWSMDRIQPLRIMAG-HLSDVDCVRWHINCN-----YIATGSSDKTV 529
           Y +++                 + ++      D       +  +       A   +   +
Sbjct: 158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI 217

Query: 530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT 589
             + +     + ++  H   ++   +         G     +     +          + 
Sbjct: 218 CEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277

Query: 590 S 590
            
Sbjct: 278 F 278

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	704
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d2j4ba1	131	TAF5 subunit of TFIID {Encephalitozoon cuniculi [T	100.0
d2j49a1	134	TAF5 subunit of TFIID {Saccharomyces cerevisiae [T	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.81
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.77
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.72
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.7
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.69
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.62
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.48
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.48
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.42
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.33
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.28
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.23
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.15
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.03
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.02
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.0
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.0
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.0
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.99
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.98
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.97
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.94
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.86
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.83
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.82
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.81
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.72
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.53
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.36
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.27
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.2
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.17
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.86
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.67
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.61
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.6
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.51
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.48
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.45
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.21
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.06
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.75
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.66
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.35
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.22
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.96
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.49
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.25
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.13
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.08
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.05
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.97
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.92
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.59
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.13
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.02
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.95
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.93
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.79
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	93.14
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.78
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.66
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.74
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	88.6
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.01
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	86.91
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	83.75
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	82.78

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-43  Score=318.37  Aligned_cols=149  Identities=29%  Similarity=0.559  Sum_probs=144.1

Q ss_pred             chhhhccccccccccCChhhHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHh
Q 005277           47 DPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEM  126 (704)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~  126 (704)
                      +|++++.+.+|+ +++||+.|+++|.+||+||+++||+||+||.+|||||||||||+||++|+.++|++||+||+++|..
T Consensus         1 ~~~~~~~l~~~~-~~~dp~~Ye~~y~~Lr~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~   79 (149)
T d2nxpa1           1 QPDVSAVLSAYN-QQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQEC   79 (149)
T ss_dssp             CCCHHHHHGGGS-SCCCTTSHHHHHHHHHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCG
T ss_pred             CccHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhH
Confidence            467888888874 7899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhcCCChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhcCcchHHHhhcceeEEEEcc
Q 005277          127 MHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSP  196 (704)
Q Consensus       127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~  196 (704)
                      +|+++|++|++|++|+|+++|+++++||+|||+|+||++++++|++||+++++++|++|||+||+|+|++
T Consensus        80 ~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s~~lLl~~L~~~~~~~il~Ii~~~l~i~v~d  149 (149)
T d2nxpa1          80 YYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFD  149 (149)
T ss_dssp             GGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHHHHTCEEEEEC
T ss_pred             HHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHHHHHHHHHHHhCCChHHHHHHHHHceeeeeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-39  Score=338.34  Aligned_cols=283  Identities=20%  Similarity=0.334  Sum_probs=250.8

Q ss_pred             EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      ....+|...|+|++|||+|++||+|+ ||.|+|||+.......                       ........+|.+.|
T Consensus        45 ~~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~-----------------------~~~~~~~~~h~~~I  100 (337)
T d1gxra_          45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS-----------------------PVSQLDCLNRDNYI  100 (337)
T ss_dssp             EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS-----------------------CSEEEECSCTTSBE
T ss_pred             EEECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc-----------------------eeEEeeecCCCCcE
Confidence            34458999999999999999999997 8999999987632111                       12234456899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~  502 (704)
                      .+++|+|++++|++|+.||+|++||+...  .....+..|...|.+++|+|++.++++++.|+.+++|++.+++......
T Consensus       101 ~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~  180 (337)
T d1gxra_         101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ  180 (337)
T ss_dssp             EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999998754  4456778899999999999999999999999999999999999999999


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~  582 (704)
                      +|...|.+++|++++..+++|+.|+.|++||+++++.+..+ .|...|.+++|+|++++|++|+.||.|++||++++...
T Consensus       181 ~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  259 (337)
T d1gxra_         181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY  259 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE
T ss_pred             ccccccccccccccccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceeccccccccccccccccc
Confidence            99999999999999999999999999999999999988876 58889999999999999999999999999999988765


Q ss_pred             eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccc
Q 005277          583 TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE  662 (704)
Q Consensus       583 ~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~  662 (704)
                       ....|...|.++.|                                  +|++++|++|+.||.|++||+.++..+    
T Consensus       260 -~~~~~~~~i~~v~~----------------------------------s~~g~~l~s~s~Dg~i~iwd~~~~~~~----  300 (337)
T d1gxra_         260 -QLHLHESCVLSLKF----------------------------------AYCGKWFVSTGKDNLLNAWRTPYGASI----  300 (337)
T ss_dssp             -EECCCSSCEEEEEE----------------------------------CTTSSEEEEEETTSEEEEEETTTCCEE----
T ss_pred             -cccccccccceEEE----------------------------------CCCCCEEEEEeCCCeEEEEECCCCCEE----
Confidence             45679999999999                                  999999999999999999999887643    


Q ss_pred             cccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       663 ~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                 ..+ .|..+|.+++|+|++++|++|+.||+
T Consensus       301 -----------~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~  329 (337)
T d1gxra_         301 -----------FQS-KESSSVLSCDISVDDKYIVTGSGDKK  329 (337)
T ss_dssp             -----------EEE-ECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred             -----------EEc-cCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence                       222 36788999999999999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.5e-39  Score=331.03  Aligned_cols=282  Identities=28%  Similarity=0.495  Sum_probs=263.9

Q ss_pred             EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      +++.+|.+.|+|++|+|++++||+|+.||+|+|||+.+                            ......+.+|.++|
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~----------------------------~~~~~~~~~h~~~V   62 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET----------------------------GDFERTLKGHTDSV   62 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT----------------------------CCCCEEECCCSSCE
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------CCEEEEEeCCCCcE
Confidence            46789999999999999999999999999999999875                            23455678899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      .+++|+|++.++++++.++++.+|+.........+.+|...+.++.|+|++..+++++.|+.+++||+++++.+..+.+|
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  142 (317)
T d1vyhc1          63 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH  142 (317)
T ss_dssp             EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccC
Confidence            99999999999999999999999999999998889999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC--------------------CEEEE
Q 005277          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG--------------------RYMAS  564 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg--------------------~~l~s  564 (704)
                      ...+.+++|+|++++|++|+.|+.|++|++.+++.+..+.+|...+.+++|+|++                    .++++
T Consensus       143 ~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (317)
T d1vyhc1         143 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  222 (317)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             CCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence            9999999999999999999999999999999999999999999999999998854                    46899


Q ss_pred             EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD  644 (704)
Q Consensus       565 g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D  644 (704)
                      |+.||.|++||+.+++++..+.+|...|.++.|                                  +|++++|++|+.|
T Consensus       223 ~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------~~~~~~l~s~~~d  268 (317)
T d1vyhc1         223 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF----------------------------------HSGGKFILSCADD  268 (317)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEE----------------------------------CSSSSCEEEEETT
T ss_pred             ccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEE----------------------------------CCCCCEEEEEECC
Confidence            999999999999999999999999999999999                                  9999999999999


Q ss_pred             CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          645 CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       645 g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      |.|+|||+.+++.               +..+..|..+|++++|+|++.+|++|+.||+
T Consensus       269 g~i~iwd~~~~~~---------------~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~  312 (317)
T d1vyhc1         269 KTLRVWDYKNKRC---------------MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT  312 (317)
T ss_dssp             TEEEEECCTTSCC---------------CEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             CeEEEEECCCCcE---------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe
Confidence            9999999987643               5667788999999999999999999999985

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

Probab=100.00  E-value=1.5e-41  Score=298.48  Aligned_cols=131  Identities=32%  Similarity=0.726  Sum_probs=127.0

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChhhhc
Q 005277           66 RYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLE  145 (704)
Q Consensus        66 ~~~~~~~~l~~~~~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (704)
                      +|+++|.+||+||++|||+||+||.+|||||||||||+||++|+.++|++||+||++||+ .|+++|++|++|++|+|++
T Consensus         1 q~e~~y~~Lr~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~   79 (131)
T d2j4ba1           1 QMETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIH   79 (131)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHh
Confidence            489999999999999999999999999999999999999999999999999999999997 5899999999999999999


Q ss_pred             cCHHHHHhhcCceEEEEchhhHHHHHHHHhhcCcchHHHhhcceeEEEEccC
Q 005277          146 EMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPG  197 (704)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~  197 (704)
                      +|++++.||+|||+|+||++++++|++||+++++++|++|||+|++|+|++|
T Consensus        80 ~n~~~~~~r~nKy~i~ms~~s~~lL~~fL~~~~~~~il~iin~~l~i~v~~g  131 (131)
T d2j4ba1          80 ENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHLDIKVYVG  131 (131)
T ss_dssp             HCHHHHHHHHSCEEEEEEHHHHHHHHHHHHHTTCHHHHHHHHHHEEEEEECC
T ss_pred             hhHHHHHHhcCceEEEeCHHHHHHHHHHHHhCCchHHHHHHHHheeEeeeCC
Confidence            9999999999999999999999999999999999999999999999999976

>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=6.5e-41  Score=295.21  Aligned_cols=131  Identities=34%  Similarity=0.628  Sum_probs=127.0

Q ss_pred             hhhHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChhh
Q 005277           64 PARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSH  143 (704)
Q Consensus        64 ~~~~~~~~~~l~~~~~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~  143 (704)
                      |+.|+++|.+||+||++|||+||+||.+|||||||||||+||++|+ .+|++||++|+++|+..|+++|++|++|++|+|
T Consensus         1 P~~Ye~~y~~Lr~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~   79 (134)
T d2j49a1           1 PENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDH   79 (134)
T ss_dssp             CTTHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHH
T ss_pred             ChHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHH
Confidence            7899999999999999999999999999999999999999999985 689999999999999999999999999999999


Q ss_pred             hccCHHHHHhhcCceEEEEchhhHHHHHHHHhhcCc---chHHHhhcceeEEEEc
Q 005277          144 LEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---TKMLGIINERINFQVS  195 (704)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~i~~~~~~~~~~  195 (704)
                      +++|++++.||+|||+|+||++|+++|++||++++.   .+|++|||+||+|+|+
T Consensus        80 l~~n~~~~~~r~nKy~I~ms~~s~~lLl~fL~~~~~~g~~~il~ii~~~l~i~vv  134 (134)
T d2j49a1          80 IKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIV  134 (134)
T ss_dssp             HHHCHHHHHHHSSCEEEEECHHHHHHHHHHHHHTGGGTHHHHHHHHHHHEEEEEC
T ss_pred             HHhhHHHHHHHcCCeEEEEcHHHHHHHHHHHHhcccchHHHHHHHHHHhcceeeC
Confidence            999999999999999999999999999999999865   5899999999999984

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-37  Score=328.44  Aligned_cols=313  Identities=24%  Similarity=0.392  Sum_probs=248.6

Q ss_pred             eEeecCCCCCCe---EEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277          331 RVHLSSAALPSV---SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (704)
Q Consensus       331 ~~~l~~~~~p~~---~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (704)
                      ...+|....|..   .+....+|.+.|+|++|||||++||+|+ |+.|+||++.+.............          ..
T Consensus        39 ~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~----------~~  107 (388)
T d1erja_          39 YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAA----------NK  107 (388)
T ss_dssp             CEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------------
T ss_pred             cEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccc----------cc
Confidence            445666655543   3344568999999999999999999996 899999999865433222111000          00


Q ss_pred             CCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeE
Q 005277          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (704)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i  487 (704)
                      ...........+|...|++++|+|++++|++|+.||+|++|+...++.+..+.+|...|.++.|++++..+++|+.++.+
T Consensus       108 ~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i  187 (388)
T d1erja_         108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV  187 (388)
T ss_dssp             -----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceee
Confidence            00111223345788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-------ecCCCCEEEEEEecCCC
Q 005277          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-------IGHRSMILSLAMSPDGR  560 (704)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-------~~h~~~i~~l~~spdg~  560 (704)
                      ++||..+.........+...+....+.+++++|++|+.||.|++||++++..+..+       .+|.+.|.+++|+|+|+
T Consensus       188 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  267 (388)
T d1erja_         188 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ  267 (388)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred             eeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC
Confidence            99999998888777766554444444458899999999999999999998877654       36888999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCee------------eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277          561 YMASGDEDGTIMMWDLASGRC------------VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF  628 (704)
Q Consensus       561 ~l~sg~~dg~I~iwdl~~~~~------------~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (704)
                      +|++|+.||.|++||++++..            ......|...|.+++|                               
T Consensus       268 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------------------------------  316 (388)
T d1erja_         268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT-------------------------------  316 (388)
T ss_dssp             EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEE-------------------------------
T ss_pred             EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEE-------------------------------
Confidence            999999999999999986543            3344567888888888                               


Q ss_pred             cccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEE------ccCCcEEEEeecCC
Q 005277          629 GCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF------SRRNLLFAAGALSK  702 (704)
Q Consensus       629 ~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~f------s~~g~~La~gs~dg  702 (704)
                         ++++++|++|+.||.|++||+.+++.               +..+.+|..+|.++++      +|++.+||+|+.||
T Consensus       317 ---s~~~~~l~sg~~dg~i~vwd~~~~~~---------------~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg  378 (388)
T d1erja_         317 ---TQNDEYILSGSKDRGVLFWDKKSGNP---------------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC  378 (388)
T ss_dssp             ---CGGGCEEEEEETTSEEEEEETTTCCE---------------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             ---CCCCCEEEEEeCCCEEEEEECCCCcE---------------EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCC
Confidence               99999999999999999999988653               5667789999999975      67999999999998


Q ss_pred             C
Q 005277          703 T  703 (704)
Q Consensus       703 t  703 (704)
                      +
T Consensus       379 ~  379 (388)
T d1erja_         379 K  379 (388)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.1e-37  Score=320.99  Aligned_cols=274  Identities=21%  Similarity=0.339  Sum_probs=235.5

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      +.+.+.+++++|+|+.||.+. ++.|.+|++..                            ......+.+|.+.|++++|
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~----------------------------~~~~~~~~~H~~~v~~~~~   66 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS----------------------------LTDTEIYTEHSHQTTVAKT   66 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC----------------------------SSCCEEECCCSSCEEEEEE
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCC----------------------------CceeEEEcCCCCCEEEEEE
Confidence            344567889999999999985 66799999875                            2344567899999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCcee--EEeecCCcCeeEEEEcCCCCEEEEEeC--CCeEEEEECCCCceeEEeccCC
Q 005277          430 SPLGDFILSSSADTTIRLWSTKLNANL--VCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQPLRIMAGHL  505 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~--~~~~~h~~~V~~v~~sp~~~~l~sgs~--dg~i~lwd~~~~~~~~~~~~~~  505 (704)
                      +|++++|++|+.||+|++||+.++...  ..+..|..+|.+++|+|+++++++++.  ++.+++|++++++....+.+|.
T Consensus        67 sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~  146 (311)
T d1nr0a1          67 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA  146 (311)
T ss_dssp             CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS
T ss_pred             eCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999987654  557889999999999999999999985  4669999999999999999999


Q ss_pred             CCeeEEEEcCCCCE-EEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277          506 SDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP  584 (704)
Q Consensus       506 ~~V~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~  584 (704)
                      ..|.+++|+|++++ |++|+.||.|++||+++++....+.+|...|+++.|+|++++|++|+.||.|++||+.++..+..
T Consensus       147 ~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~  226 (311)
T d1nr0a1         147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV  226 (311)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             cccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccc
Confidence            99999999999885 78899999999999999999999999999999999999999999999999999999999887765


Q ss_pred             e-------cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          585 L-------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       585 ~-------~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      +       .+|.+.|++++|                                  +|++++|++|+.||+|+|||+.+++.
T Consensus       227 ~~~~~~~~~~h~~~V~~~~~----------------------------------s~~~~~l~tgs~Dg~v~iwd~~t~~~  272 (311)
T d1nr0a1         227 FEDDSLKNVAHSGSVFGLTW----------------------------------SPDGTKIASASADKTIKIWNVATLKV  272 (311)
T ss_dssp             CBCTTSSSCSSSSCEEEEEE----------------------------------CTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             cccccccccccccccccccc----------------------------------CCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            5       368889999999                                  99999999999999999999988754


Q ss_pred             ccccccccCccccccccccCCC---CcCeEEEEEccCCcEEEEeecCCC
Q 005277          658 VLKTEEKSGTNRLRSLKTLPTK---STPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       658 ~~~~~~~~~~~~~~~l~~~~~~---~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      +               .++..+   ...+.++.|  ++..|++++.||.
T Consensus       273 ~---------------~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~  304 (311)
T d1nr0a1         273 E---------------KTIPVGTRIEDQQLGIIW--TKQALVSISANGF  304 (311)
T ss_dssp             E---------------EEEECCSSGGGCEEEEEE--CSSCEEEEETTCC
T ss_pred             E---------------EEEECCCCccceEEEEEe--cCCEEEEEECCCE
Confidence            3               233222   223444555  4556888888885

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.7e-36  Score=313.77  Aligned_cols=262  Identities=20%  Similarity=0.249  Sum_probs=226.1

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ...+.++....+... ..+.+|...|+|++|+|+|++||+|+.||.|+||++....                        
T Consensus        37 ~~~v~i~~~~~~~~~-~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~------------------------   91 (311)
T d1nr0a1          37 GTSVYTVPVGSLTDT-EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT------------------------   91 (311)
T ss_dssp             TTEEEEEETTCSSCC-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT------------------------
T ss_pred             CCEEEEEECCCCcee-EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc------------------------
Confidence            345667765544332 2357899999999999999999999999999999987521                        


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCE-EEEEeCCC
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDR  485 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~-l~sgs~dg  485 (704)
                        ......+.+|.++|.+++|+|++++|++++.  +..+++|++++++....+.+|...|++++|+|++.+ |++|+.||
T Consensus        92 --~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~  169 (311)
T d1nr0a1          92 --HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN  169 (311)
T ss_dssp             --CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred             --cccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence              1223456789999999999999999998875  456999999999999999999999999999999875 88899999


Q ss_pred             eEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-------cCCCCEEEEEEecC
Q 005277          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-------GHRSMILSLAMSPD  558 (704)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-------~h~~~i~~l~~spd  558 (704)
                      .|++||+++.+....+..|...|.++.|+|+++++++|+.|+.|++||+.++..+..+.       +|.+.|++++|+|+
T Consensus       170 ~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~  249 (311)
T d1nr0a1         170 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD  249 (311)
T ss_dssp             CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence            99999999999999999999999999999999999999999999999999998877663       58889999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeeeecCCCc---eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC
Q 005277          559 GRYMASGDEDGTIMMWDLASGRCVTPLMGHTS---CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG  635 (704)
Q Consensus       559 g~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~---~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  635 (704)
                      |++|++|+.||.|+|||+++++++.++..|..   .+.++.                                    +++
T Consensus       250 ~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~------------------------------------~~~  293 (311)
T d1nr0a1         250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------------------WTK  293 (311)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------------------ECS
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEE------------------------------------ecC
Confidence            99999999999999999999999998877653   233333                                    356


Q ss_pred             CEEEEEeCCCcEEEEeCC
Q 005277          636 SLLASGSADCTVKLWDVT  653 (704)
Q Consensus       636 ~~lasgs~Dg~V~iWd~~  653 (704)
                      +.|++++.||.|++||.+
T Consensus       294 ~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         294 QALVSISANGFINFVNPE  311 (311)
T ss_dssp             SCEEEEETTCCEEEEETT
T ss_pred             CEEEEEECCCEEEEEeCC
Confidence            689999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-35  Score=306.77  Aligned_cols=282  Identities=21%  Similarity=0.369  Sum_probs=250.3

Q ss_pred             EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      ..++.+|.+.|+|++|+|++++||+|+.||.|+|||+.+                            ......+.+|.++
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~----------------------------~~~~~~~~~~~~~   99 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT----------------------------TNKVHAIPLRSSW   99 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT----------------------------TEEEEEEECSCSC
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccc----------------------------ceeEEEEeccccc
Confidence            456889999999999999999999999999999999875                            3455667789999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      |.+++|+|++.++++|+.|+.+++|+.....    ....+.+|.......... .+..+..+..+.....|.........
T Consensus       100 v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (340)
T d1tbga_         100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTT  178 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             EEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccc-cccccccccccccccccccccccccc
Confidence            9999999999999999999999999977543    345566777666555544 55678888899999999999888888


Q ss_pred             EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~  579 (704)
                      ....+...+.+..+.+.+.++++|+.|+.|++||+++++++..+.+|...|++++|+|+|++|++|+.||.|++||++..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             cccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence            88888899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eeeeee--cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          580 RCVTPL--MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       580 ~~~~~~--~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      ..+..+  ..|...|.++.|                                  ++++++|++|+.||.|++||+.+++.
T Consensus       259 ~~~~~~~~~~~~~~i~~~~~----------------------------------s~~~~~l~~g~~dg~i~iwd~~~~~~  304 (340)
T d1tbga_         259 QELMTYSHDNIICGITSVSF----------------------------------SKSGRLLLAGYDDFNCNVWDALKADR  304 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEE----------------------------------CSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred             ccccccccccccCceEEEEE----------------------------------CCCCCEEEEEECCCEEEEEECCCCcE
Confidence            887665  456678999999                                  99999999999999999999987643


Q ss_pred             ccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          658 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       658 ~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                     +..+.+|..+|++++|+|++.+|++|+.||+
T Consensus       305 ---------------~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         305 ---------------AGVLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             ---------------EEEECCCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             ---------------EEEEcCCCCCEEEEEEeCCCCEEEEEccCCE
Confidence                           5677889999999999999999999999986

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-36  Score=323.63  Aligned_cols=292  Identities=18%  Similarity=0.228  Sum_probs=236.6

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      .++|+|++|||||++||+|+.||.|+||++...                          .......+.+|.++|.+++|+
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~--------------------------~~~~~~~l~gH~~~V~~l~fs   60 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN--------------------------KWVQVHELKEHNGQVTGVDWA   60 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETT--------------------------EEEEEEEEECCSSCEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCC--------------------------CEEEEEEecCCCCCEEEEEEC
Confidence            477999999999999999999999999998641                          123456678999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCce--eEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee----EEeccC
Q 005277          431 PLGDFILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL----RIMAGH  504 (704)
Q Consensus       431 p~~~~l~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~----~~~~~~  504 (704)
                      |++++|++|+.|++|++||+.++..  ...+.+|...|++++|+|++++|++|+.|+++++|+++.....    .....|
T Consensus        61 p~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~  140 (371)
T d1k8kc_          61 PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI  140 (371)
T ss_dssp             TTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC
T ss_pred             CCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccc
Confidence            9999999999999999999987654  4455678999999999999999999999999999998765532    334578


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC------------------cEEEEeecCCCCEEEEEEecCCCEEEEEe
Q 005277          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG------------------ECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~------------------~~~~~~~~h~~~i~~l~~spdg~~l~sg~  566 (704)
                      ...|.+++|+|++++|++|+.|++|++||...+                  ..+....+|...|.+++|+|+|++|++++
T Consensus       141 ~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  220 (371)
T d1k8kc_         141 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS  220 (371)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             ccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc
Confidence            899999999999999999999999999998642                  35566778999999999999999999999


Q ss_pred             CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT  646 (704)
Q Consensus       567 ~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~  646 (704)
                      .||.|++||+.+++.+..+..|..+|.++.|                                  ++++.+|++|+ |+.
T Consensus       221 ~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~f----------------------------------s~d~~~la~g~-d~~  265 (371)
T d1k8kc_         221 HDSTVCLADADKKMAVATLASETLPLLAVTF----------------------------------ITESSLVAAGH-DCF  265 (371)
T ss_dssp             TTTEEEEEEGGGTTEEEEEECSSCCEEEEEE----------------------------------EETTEEEEEET-TSS
T ss_pred             cCCcceEEeeecccceeeeecccccceeeee----------------------------------cCCCCEEEEEc-CCc
Confidence            9999999999999999999999999999999                                  89998887655 777


Q ss_pred             EEEEeCCCCccccccccc------cC--------------------ccccccccccCCCCcCeEEEEEccCC----cEEE
Q 005277          647 VKLWDVTTSTKVLKTEEK------SG--------------------TNRLRSLKTLPTKSTPVYSLQFSRRN----LLFA  696 (704)
Q Consensus       647 V~iWd~~~~~~~~~~~~~------~~--------------------~~~~~~l~~~~~~~~~V~~l~fs~~g----~~La  696 (704)
                      +++|..............      ..                    ............|...|.++++.+.+    ..++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~  345 (371)
T d1k8kc_         266 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC  345 (371)
T ss_dssp             CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE
T ss_pred             eEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEE
Confidence            777765543322111000      00                    00000011123488899999998754    4689


Q ss_pred             EeecCCC
Q 005277          697 AGALSKT  703 (704)
Q Consensus       697 ~gs~dgt  703 (704)
                      +|+.||+
T Consensus       346 T~g~Dg~  352 (371)
T d1k8kc_         346 TTGMDGG  352 (371)
T ss_dssp             EEETTSE
T ss_pred             EEcCCCe
Confidence            9999984

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=304.05  Aligned_cols=261  Identities=20%  Similarity=0.318  Sum_probs=232.9

Q ss_pred             cCeEeecCCCC----CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccc
Q 005277          329 RNRVHLSSAAL----PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (704)
Q Consensus       329 ~~~~~l~~~~~----p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (704)
                      ...+++|+...    .........+|.+.|.|++|+|||++|++|+.||.|++||+....                    
T Consensus        71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~--------------------  130 (337)
T d1gxra_          71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT--------------------  130 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------------------
T ss_pred             CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc--------------------
Confidence            34678886532    233444566888999999999999999999999999999986421                    


Q ss_pred             cCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC
Q 005277          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (704)
Q Consensus       405 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d  484 (704)
                            ......+.+|...|.+++|+|++.++++++.|+.|++|++.+++......+|..+|++++|++++..+++|+.|
T Consensus       131 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d  204 (337)
T d1gxra_         131 ------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             -------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                  23445567899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s  564 (704)
                      +.+++||+++++.+..+. |...|.+++|+|++++|++|+.|+.|++||++++.... ...|...|++++|+|+|++|++
T Consensus       205 ~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s  282 (337)
T d1gxra_         205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccccccc-ccccccccceEEECCCCCEEEE
Confidence            999999999998887765 78899999999999999999999999999999888764 5589999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD  644 (704)
Q Consensus       565 g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D  644 (704)
                      |+.||.|++||+.+++.+..+. |...|.+++|                                  +|++++|++|+.|
T Consensus       283 ~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~----------------------------------s~d~~~l~t~s~D  327 (337)
T d1gxra_         283 TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDI----------------------------------SVDDKYIVTGSGD  327 (337)
T ss_dssp             EETTSEEEEEETTTCCEEEEEE-CSSCEEEEEE----------------------------------CTTSCEEEEEETT
T ss_pred             EeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEE----------------------------------eCCCCEEEEEeCC
Confidence            9999999999999999887765 7789999999                                  9999999999999


Q ss_pred             CcEEEEeC
Q 005277          645 CTVKLWDV  652 (704)
Q Consensus       645 g~V~iWd~  652 (704)
                      |+|+|||+
T Consensus       328 ~~I~vWdl  335 (337)
T d1gxra_         328 KKATVYEV  335 (337)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-33  Score=288.72  Aligned_cols=279  Identities=16%  Similarity=0.222  Sum_probs=222.9

Q ss_pred             EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceee-ccCCcc
Q 005277          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL-YQGHSG  422 (704)
Q Consensus       344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~  422 (704)
                      ..++.+|.+.|+|++|+|||++||+|+.||.|++||+.+..                            .... ..+|..
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~----------------------------~~~~~~~~h~~   56 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI----------------------------SNRVFPDVHAT   56 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----------------------------EEECSSCSCSS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc----------------------------EEEEEcCCCCC
Confidence            34678999999999999999999999999999999987521                            2222 347899


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      .|++++|+|++. +++++.|+++++|+......   ......+...+.+++|+|++.++++++ ++.+.+|+...  ...
T Consensus        57 ~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~  132 (299)
T d1nr0a2          57 MITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTE  132 (299)
T ss_dssp             CEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEE
T ss_pred             cEEEEEeeccce-eecccceeeEEEeccCCccccccccccccccccccccccccccccccccc-ccccccccccc--ccc
Confidence            999999999987 55677899999999875432   222345778899999999999777665 57899999643  222


Q ss_pred             EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE-EeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~-~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                      ..  ....+.+++|+|++++|++|+.||.|++||+++++... ....|...|++++|+|++++|++++.||.|++||+.+
T Consensus       133 ~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         133 VP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             EE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             cc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            22  34568899999999999999999999999998887654 3457899999999999999999999999999999988


Q ss_pred             Ceee---eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277          579 GRCV---TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS  655 (704)
Q Consensus       579 ~~~~---~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~  655 (704)
                      +..+   ..+.+|...|.+++|                                  +|++.+|++|+.||.|++||+.++
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~----------------------------------s~~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSW----------------------------------SPDNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEE----------------------------------CTTSSEEEEEETTSCEEEEETTCT
T ss_pred             cccccccccccccccccccccc----------------------------------cccccceEEEcCCCEEEEEECCCC
Confidence            7654   345678999999999                                  999999999999999999999876


Q ss_pred             ccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          656 TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       656 ~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ....            .+.....+...|.++.| +++.+|++|+.||+
T Consensus       257 ~~~~------------~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~  291 (299)
T d1nr0a2         257 SDHP------------IIIKGAHAMSSVNSVIW-LNETTIVSAGQDSN  291 (299)
T ss_dssp             TSCC------------EEETTSSTTSCEEEEEE-EETTEEEEEETTSC
T ss_pred             Ccce------------EEEecCCCCCcEEEEEE-CCCCEEEEEeCCCE
Confidence            5321            11222334556777655 55678899999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-32  Score=282.11  Aligned_cols=260  Identities=28%  Similarity=0.529  Sum_probs=239.2

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ...+++|+..... ...++..|.+.|.+++|+|++.+++++..++.+.+|+...                          
T Consensus        38 Dg~i~iWd~~~~~-~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------   90 (317)
T d1vyhc1          38 DATIKVWDYETGD-FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--------------------------   90 (317)
T ss_dssp             SSCEEEEETTTCC-CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--------------------------
T ss_pred             CCeEEEEECCCCC-EEEEEeCCCCcEEEEeeecccccccccccccccccccccc--------------------------
Confidence            3568888754332 3446778999999999999999999999999999999765                          


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEE
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~  488 (704)
                        ......+.+|...+.++.|+|+++.+++++.|+.+++||+.++..+..+.+|...+.+++|+|++.+|++++.|+.++
T Consensus        91 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~  168 (317)
T d1vyhc1          91 --FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  168 (317)
T ss_dssp             --SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             --cccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence              234455678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEeccCCCCeeEEEEcCCC--------------------CEEEEEECCCcEEEEeCCCCcEEEEeecCCC
Q 005277          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINC--------------------NYIATGSSDKTVRLWDVSSGECVRIFIGHRS  548 (704)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~--------------------~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~  548 (704)
                      +|++.+......+.+|...+.++.|+|++                    .++++|+.|+.|++||+++++++..+.+|..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  248 (317)
T d1vyhc1         169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  248 (317)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC
Confidence            99999999999999999999999998753                    4789999999999999999999999999999


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF  628 (704)
Q Consensus       549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (704)
                      .|.+++|+|+|++|++|+.||.|++||+.+++++..+.+|.+.|++++|                               
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~-------------------------------  297 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF-------------------------------  297 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE-------------------------------
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEE-------------------------------
Confidence            9999999999999999999999999999999999999999999999999                               


Q ss_pred             cccCCCCCEEEEEeCCCcEEEEe
Q 005277          629 GCASCEGSLLASGSADCTVKLWD  651 (704)
Q Consensus       629 ~~~s~~g~~lasgs~Dg~V~iWd  651 (704)
                         +|++++|++|+.||+|+|||
T Consensus       298 ---s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         298 ---HKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ---CSSSSCEEEEETTSEEEEEC
T ss_pred             ---cCCCCEEEEEeCCCeEEEeC
Confidence               99999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-32  Score=293.05  Aligned_cols=251  Identities=27%  Similarity=0.524  Sum_probs=215.0

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      ...|...|+|++|+|+|++|++|+.||.|++|+...                            ........+|...|.+
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~----------------------------~~~~~~~~~h~~~v~~  168 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN----------------------------RKIVMILQGHEQDIYS  168 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------TEEEEEECCCSSCEEE
T ss_pred             ccCCCCCEEEEEECCCCCcceecccccccccccccc----------------------------cccccccccccccccc
Confidence            456778899999999999999999999999999865                            3455667889999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-----
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-----  501 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~-----  501 (704)
                      +.|++++..+++++.++.|++||..+.........+...+....+.+++.+|++|+.||.|++|+..++.....+     
T Consensus       169 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~  248 (388)
T d1erja_         169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE  248 (388)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----
T ss_pred             cccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccc
Confidence            999999999999999999999999988888777766655544444458999999999999999999988776554     


Q ss_pred             --ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc------------EEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          502 --AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE------------CVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       502 --~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~------------~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                        .+|...|.+++|+|++++|++|+.||.|++||++++.            +......|...|.+++|+|+|++|++|+.
T Consensus       249 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~  328 (388)
T d1erja_         249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK  328 (388)
T ss_dssp             --CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC
Confidence              3688899999999999999999999999999997653            34455678999999999999999999999


Q ss_pred             CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcE
Q 005277          568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV  647 (704)
Q Consensus       568 dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V  647 (704)
                      ||.|++||+.+++++.++.+|.+.|.++.+..                            ..+++|++.+|+||+.||+|
T Consensus       329 dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~----------------------------~~~~spd~~~l~s~s~Dg~I  380 (388)
T d1erja_         329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN----------------------------GSSLGPEYNVFATGSGDCKA  380 (388)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECS----------------------------SCTTCTTCEEEEEEETTSEE
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCCEEEEEEec----------------------------CcccCCCCCEEEEEeCCCEE
Confidence            99999999999999999999999999987621                            11238899999999999999


Q ss_pred             EEEeCC
Q 005277          648 KLWDVT  653 (704)
Q Consensus       648 ~iWd~~  653 (704)
                      +||+++
T Consensus       381 ~iW~~~  386 (388)
T d1erja_         381 RIWKYK  386 (388)
T ss_dssp             EEEEEE
T ss_pred             EEEeee
Confidence            999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-32  Score=282.59  Aligned_cols=311  Identities=23%  Similarity=0.377  Sum_probs=241.2

Q ss_pred             EEEEeeCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277          344 FYTFINTHNGL-NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (704)
Q Consensus       344 ~~~~~~~~~~V-~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (704)
                      ..++.+|.+.| +|++|  ++++||+|+.||+|+|||+.+                            .+....+.+|.+
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~----------------------------~~~~~~l~~H~~   54 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN----------------------------KKFLLQLSGHDG   54 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTT----------------------------TEEEEEEECCSS
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCC----------------------------CcEEEEEECCCC
Confidence            45688998885 67665  678999999999999999875                            345677889999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC--CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~  500 (704)
                      +|++++|+|+ .+|++|+.||+|++|++...........+  ...+....+.+++.++++++.|+.|++||+.+......
T Consensus        55 ~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~  133 (355)
T d1nexb2          55 GVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD  133 (355)
T ss_dssp             CEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------
T ss_pred             CEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecc
Confidence            9999999985 58999999999999999988877665543  33455677888999999999999999999986543322


Q ss_pred             -----------------------eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec
Q 005277          501 -----------------------MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP  557 (704)
Q Consensus       501 -----------------------~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp  557 (704)
                                             ...|...+  ..+.++++++++++.|+.|++||+++++.+....++...+.++.|+|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  211 (355)
T d1nexb2         134 HGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH  211 (355)
T ss_dssp             -----CCCEEESCTTTCTTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET
T ss_pred             ccccceeccceeccccccceeeeeeeccccc--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccc
Confidence                                   11222233  34456789999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeee---hccccccccccccccceee--eeeeEEeecccC
Q 005277          558 DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLL---LVTNAYLKISDKVSTGFLF--YSLTIIYFGCAS  632 (704)
Q Consensus       558 dg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s  632 (704)
                      ++.++++++.||.|++||+.++..+..+.+|...|.++.+....   ...++.+++|+........  +........+++
T Consensus       212 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  291 (355)
T d1nexb2         212 ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFY  291 (355)
T ss_dssp             TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEE
T ss_pred             cceeeecccccceEEeeeccccccccccccccccccccccccceeeeeecccccccccccccceecccccCCceEEEEEc
Confidence            99999999999999999999999999999999999999885322   2334455666544332221  112222334457


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          633 CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       633 ~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      +++.++++|+ ||.|+|||+.+++.+              ...+..|..+|.+++|+|+ .++++|+.||+
T Consensus       292 ~~~~~l~~g~-d~~i~vwd~~tg~~~--------------~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~  346 (355)
T d1nexb2         292 VSDNILVSGS-ENQFNIYNLRSGKLV--------------HANILKDADQIWSVNFKGK-TLVAAVEKDGQ  346 (355)
T ss_dssp             ECSSEEEEEE-TTEEEEEETTTCCBC--------------CSCTTTTCSEEEEEEEETT-EEEEEEESSSC
T ss_pred             CCCCEEEEEe-CCEEEEEECCCCCEE--------------EEEecCCCCCEEEEEEcCC-eEEEEEECCCc
Confidence            7777777665 899999999987542              1245678889999999997 47888888885

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=278.25  Aligned_cols=278  Identities=25%  Similarity=0.493  Sum_probs=221.9

Q ss_pred             EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (704)
Q Consensus       345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (704)
                      .++.+|.+.|.+ +++++|++||+|+.||+|+|||+.+                            .+....+.+|.++|
T Consensus        10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~----------------------------~~~~~~~~~h~~~V   60 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT----------------------------GKCLRTLVGHTGGV   60 (342)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT----------------------------CCEEEECCCCSSCE
T ss_pred             EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCC----------------------------CCEEEEEeCCCCCE
Confidence            357899999865 3666899999999999999999875                            34566788999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCee-------------------------------------
Q 005277          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW-------------------------------------  467 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~-------------------------------------  467 (704)
                      .+++|+|  .+|++|+.|+++++|+............+...+.                                     
T Consensus        61 ~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  138 (342)
T d2ovrb2          61 WSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA  138 (342)
T ss_dssp             EEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred             EEEEeCC--CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccc
Confidence            9999996  4899999999999999886554333322221111                                     


Q ss_pred             -EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC
Q 005277          468 -DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH  546 (704)
Q Consensus       468 -~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h  546 (704)
                       ...+.+....+++++.|+.+++||......+..+.+|...+.++.  +++.++++|+.||.|++||++.++++..+.+|
T Consensus       139 ~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~  216 (342)
T d2ovrb2         139 AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH  216 (342)
T ss_dssp             CEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             cceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccceeeeEeccc
Confidence             122333456788899999999999999888888888877666554  57889999999999999999999999999999


Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC---CCceeeeeeeeeeehccccccccccccccceeeeee
Q 005277          547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG---HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL  623 (704)
Q Consensus       547 ~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~---h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (704)
                      ...+.+++++  +++|++|+.||.|++||+...+....+..   |...+.++.+                          
T Consensus       217 ~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------  268 (342)
T d2ovrb2         217 QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--------------------------  268 (342)
T ss_dssp             CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--------------------------
T ss_pred             ccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--------------------------
Confidence            9999888776  56999999999999999999888777765   4455555544                          


Q ss_pred             eEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          624 TIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       624 ~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                +++++++|+.||+|+|||+.+++.+....          ......|..+|++++|+|++.+||+|+.|||
T Consensus       269 ----------~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~----------~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt  328 (342)
T d2ovrb2         269 ----------NKNFVITSSDDGTVKLWDLKTGEFIRNLV----------TLESGGSGGVVWRIRASNTKLVCAVGSRNGT  328 (342)
T ss_dssp             ----------CSSEEEEEETTSEEEEEETTTCCEEEEEE----------ECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             ----------CCCeeEEEcCCCEEEEEECCCCCEEEEEe----------cccCCCCCCCEEEEEECCCCCEEEEEeCCCC
Confidence                      56799999999999999999887543221          1122357788999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-32  Score=292.14  Aligned_cols=232  Identities=22%  Similarity=0.282  Sum_probs=202.0

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce-
Q 005277          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-  497 (704)
Q Consensus       421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~-  497 (704)
                      ..||+|++|+|++++|++|+.||.|++||+.+++  .+..+++|..+|++++|+|++++|++|+.|++|++||+++... 
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            4789999999999999999999999999998765  5677889999999999999999999999999999999987654 


Q ss_pred             -eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE----EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277          498 -LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (704)
Q Consensus       498 -~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~----~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~  572 (704)
                       ...+.+|...|.+++|+|++++|++|+.|++|++|++.....    ......|...|.+++|+|+|++|++|+.||.|+
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence             445567889999999999999999999999999999876543    333457889999999999999999999999999


Q ss_pred             EEeCCCC------------------eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC
Q 005277          573 MWDLASG------------------RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE  634 (704)
Q Consensus       573 iwdl~~~------------------~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  634 (704)
                      +||+...                  ..+....+|...|.+++|                                  +|+
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------s~~  212 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF----------------------------------SAN  212 (371)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE----------------------------------CSS
T ss_pred             EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEe----------------------------------ecc
Confidence            9998643                  234555678888888888                                  999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          635 GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       635 g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                      +++|++|+.||.|++||+.++.               .+..+..|..+|.+++|+|++.+||+|..+
T Consensus       213 g~~l~s~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~v~s~~fs~d~~~la~g~d~  264 (371)
T d1k8kc_         213 GSRVAWVSHDSTVCLADADKKM---------------AVATLASETLPLLAVTFITESSLVAAGHDC  264 (371)
T ss_dssp             SSEEEEEETTTEEEEEEGGGTT---------------EEEEEECSSCCEEEEEEEETTEEEEEETTS
T ss_pred             cccccccccCCcceEEeeeccc---------------ceeeeecccccceeeeecCCCCEEEEEcCC
Confidence            9999999999999999997754               355667788999999999999999987643

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-31  Score=280.06  Aligned_cols=281  Identities=19%  Similarity=0.227  Sum_probs=220.4

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCc-EEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC-ccCeEEEEE
Q 005277          352 NGLNCASISQDGSLVAGGFSDSS-LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH-SGPVYSASF  429 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg~~dg~-I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~  429 (704)
                      ..+++++|+|+|+.||.++.++. |+.|+...                          ........+.+| ...|++++|
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~--------------------------~~~~~~~~~~gh~~~~v~~v~f   71 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGD--------------------------SKVPPVVQFTGHGSSVVTTVKF   71 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSC--------------------------CSSCSEEEECTTTTSCEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCC--------------------------CCccceEEEeCCCCCCEEEEEE
Confidence            34678999999999999875543 45555322                          112334556677 568999999


Q ss_pred             cC--CCCEEEEEeCCCeEEEEeCCCCcee--------EEeecCCcCeeEEEEcCCCCEEEEEeC--CCeEEEEECCCCce
Q 005277          430 SP--LGDFILSSSADTTIRLWSTKLNANL--------VCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQP  497 (704)
Q Consensus       430 sp--~~~~l~s~s~Dg~I~lwd~~~~~~~--------~~~~~h~~~V~~v~~sp~~~~l~sgs~--dg~i~lwd~~~~~~  497 (704)
                      +|  ++.+|++|+.||+|++||+..+...        ..+..|.++|.+++|++++.++++++.  ++.+++|+.++++.
T Consensus        72 sP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~  151 (325)
T d1pgua1          72 SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS  151 (325)
T ss_dssp             CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE
T ss_pred             eeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc
Confidence            98  5679999999999999998765432        234568899999999999999988764  67899999999999


Q ss_pred             eEEeccCCCCeeEEEEcCCCCE-EEEEECCCcEEEEeCCCCcEEEEee---cCCCCEEEEEEecC-CCEEEEEeCCCeEE
Q 005277          498 LRIMAGHLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIFI---GHRSMILSLAMSPD-GRYMASGDEDGTIM  572 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~~~~---~h~~~i~~l~~spd-g~~l~sg~~dg~I~  572 (704)
                      +..+.+|...|.+++|+|++++ +++++.|+.|++||..+++....+.   +|...|++++|+|+ +.+|++|+.||.|+
T Consensus       152 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~  231 (325)
T d1pgua1         152 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS  231 (325)
T ss_dssp             EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred             ceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccccccee
Confidence            9999999999999999998875 6789999999999999887766553   56778999999996 68999999999999


Q ss_pred             EEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277          573 MWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV  652 (704)
Q Consensus       573 iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~  652 (704)
                      +||+++++.+..+.+|...+.++.|...                               .++|++|++|+.||.|+|||+
T Consensus       232 iwd~~~~~~~~~l~~~~~~v~~~~~s~~-------------------------------~~dg~~l~s~s~D~~i~iwd~  280 (325)
T d1pgua1         232 CFDGKSGEFLKYIEDDQEPVQGGIFALS-------------------------------WLDSQKFATVGADATIRVWDV  280 (325)
T ss_dssp             EEETTTCCEEEECCBTTBCCCSCEEEEE-------------------------------ESSSSEEEEEETTSEEEEEET
T ss_pred             eeeeccccccccccccccccccceeeee-------------------------------ccCCCEEEEEeCCCeEEEEEC
Confidence            9999999999999999988877766110                               268899999999999999999


Q ss_pred             CCCccccccccccCccccccccccCCCCcCeE--EEEEccCCcEEEEeecCCC
Q 005277          653 TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY--SLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~--~l~fs~~g~~La~gs~dgt  703 (704)
                      .+++.+...             ....+...+.  ++.|.+++ +|++|+.||+
T Consensus       281 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~  319 (325)
T d1pgua1         281 TTSKCVQKW-------------TLDKQQLGNQQVGVVATGNG-RIISLSLDGT  319 (325)
T ss_dssp             TTTEEEEEE-------------ECCTTCGGGCEEEEEEEETT-EEEEEETTSC
T ss_pred             CCCCEEEEE-------------EecCCcccCeEEEEEECCCC-EEEEEECCCE
Confidence            987643211             1122222233  44455544 6778888875

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-31  Score=276.93  Aligned_cols=257  Identities=15%  Similarity=0.173  Sum_probs=209.7

Q ss_pred             EEEEEeeCC-CCEEEEEEcC--CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC
Q 005277          343 SFYTFINTH-NGLNCASISQ--DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (704)
Q Consensus       343 ~~~~~~~~~-~~V~~~~fs~--dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (704)
                      ....+.+|+ ..|+|++|+|  +|.+||+|+.||+|+|||+.........                    .......+..
T Consensus        54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~--------------------~~~~~~~~~~  113 (325)
T d1pgua1          54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV--------------------EVNVKSEFQV  113 (325)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE--------------------EEEEEEEEEC
T ss_pred             ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeee--------------------eccccccccc
Confidence            344566775 5799999998  5789999999999999998753221110                    0112234567


Q ss_pred             CccCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCE-EEEEeCCCeEEEEECCCCc
Q 005277          420 HSGPVYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQ  496 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~-l~sgs~dg~i~lwd~~~~~  496 (704)
                      |.++|.+++|++++++|++++.  ++.+++|+.++++.+..+.+|...|.+++|+|++.+ +++++.|+.+++||....+
T Consensus       114 ~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  193 (325)
T d1pgua1         114 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK  193 (325)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred             ccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccc
Confidence            8999999999999999887654  678999999999999999999999999999998765 7789999999999998876


Q ss_pred             eeEEec---cCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEe---cCCCEEEEEeCCC
Q 005277          497 PLRIMA---GHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS---PDGRYMASGDEDG  569 (704)
Q Consensus       497 ~~~~~~---~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~s---pdg~~l~sg~~dg  569 (704)
                      ....+.   .|...|.+++|+|+ +.+|++|+.||.|++||+++++.+..+.+|..++.++.|+   |+|++|++++.||
T Consensus       194 ~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~  273 (325)
T d1pgua1         194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA  273 (325)
T ss_dssp             EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS
T ss_pred             cceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCC
Confidence            655543   56778999999996 6899999999999999999999999999998887766666   6899999999999


Q ss_pred             eEEEEeCCCCeeeeeecCCCceee--eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcE
Q 005277          570 TIMMWDLASGRCVTPLMGHTSCVW--TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV  647 (704)
Q Consensus       570 ~I~iwdl~~~~~~~~~~~h~~~V~--sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V  647 (704)
                      .|+|||+++++++..+..|...+.  .+.+.                                 .+.+.+|++||.||+|
T Consensus       274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~l~s~s~dg~i  320 (325)
T d1pgua1         274 TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV---------------------------------ATGNGRIISLSLDGTL  320 (325)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCGGGCEEEEE---------------------------------EEETTEEEEEETTSCE
T ss_pred             eEEEEECCCCCEEEEEEecCCcccCeEEEEE---------------------------------ECCCCEEEEEECCCEE
Confidence            999999999999988877665433  33331                                 1224589999999999


Q ss_pred             EEEeC
Q 005277          648 KLWDV  652 (704)
Q Consensus       648 ~iWd~  652 (704)
                      +|||+
T Consensus       321 ~vwdl  325 (325)
T d1pgua1         321 NFYEL  325 (325)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.3e-30  Score=264.46  Aligned_cols=263  Identities=24%  Similarity=0.382  Sum_probs=232.7

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ...+++|+.... ....++..|...|.+++|+|++.++++|+.|+.|++|+.....                        
T Consensus        76 Dg~v~iWd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~------------------------  130 (340)
T d1tbga_          76 DGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE------------------------  130 (340)
T ss_dssp             TTEEEEEETTTT-EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSC------------------------
T ss_pred             CCceeeeecccc-eeEEEEecccccEEeeEeeccceeeeeecccceeecccccccc------------------------
Confidence            457889976544 3455677899999999999999999999999999999976521                        


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEE
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~  488 (704)
                      ........+.+|........+.. +..+..+..|.....|.............+...+....+.+.+.++++|+.|+.++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  209 (340)
T d1tbga_         131 GNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK  209 (340)
T ss_dssp             SCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             cccccceeccccccccccccccc-ccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEE
Confidence            11234455677887777666654 55678888899999999998888888888899999999999999999999999999


Q ss_pred             EEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCCCEEEEEe
Q 005277          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~  566 (704)
                      +||+++++++..+.+|...|.+++|+|++++|++|+.||.|++||++....+..+.  .+...|.+++|+|+|++|++|+
T Consensus       210 i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  289 (340)
T d1tbga_         210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEE
T ss_pred             EEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEE
Confidence            99999999999999999999999999999999999999999999999998877664  5567899999999999999999


Q ss_pred             CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT  646 (704)
Q Consensus       567 ~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~  646 (704)
                      .||.|++||+.+++++..+.+|.+.|++++|                                  +|++.+|+|||.||+
T Consensus       290 ~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~----------------------------------s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGV----------------------------------TDDGMAVATGSWDSF  335 (340)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEE----------------------------------CTTSSCEEEEETTSC
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEE----------------------------------eCCCCEEEEEccCCE
Confidence            9999999999999999999999999999999                                  999999999999999


Q ss_pred             EEEEe
Q 005277          647 VKLWD  651 (704)
Q Consensus       647 V~iWd  651 (704)
                      |+|||
T Consensus       336 v~iWd  340 (340)
T d1tbga_         336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-29  Score=256.34  Aligned_cols=275  Identities=27%  Similarity=0.530  Sum_probs=226.9

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      +..|..+|+|++|  ||++||+|+.||+|+|||+.+                            ......+.+|.++|++
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~----------------------------~~~~~~l~~H~~~V~~   60 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT----------------------------LECKRILTGHTGSVLC   60 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS----------------------------CCEEEEECCCSSCEEE
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCC----------------------------CcEEEEEecCCCCEee
Confidence            4567889999765  789999999999999999875                            3456778899999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce---eEEecc
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---LRIMAG  503 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~---~~~~~~  503 (704)
                      ++|  ++++|++|+.||+|++|++..+........+....  ..+.+....++++..++.+.+|+......   ...+..
T Consensus        61 v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (293)
T d1p22a2          61 LQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG  136 (293)
T ss_dssp             EEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred             eec--ccceeeccccccccccccccccccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccc
Confidence            987  47899999999999999999988877776554443  44556677899999999999999987553   445567


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeee
Q 005277          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~  583 (704)
                      |...|.++.+.+  ..+++++.|+.|++||+++++.+..+.++...+..+.++  +.++++++.||.|++||+++++.+.
T Consensus       137 ~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~  212 (293)
T d1p22a2         137 HRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR  212 (293)
T ss_dssp             CSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             cccccccceecc--cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeee
Confidence            888888877654  578899999999999999999999999999999888775  6789999999999999999999999


Q ss_pred             eecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccc
Q 005277          584 PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEE  663 (704)
Q Consensus       584 ~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~  663 (704)
                      ...+|...+..+                                    ++++.+|++|+.||.|++||+........   
T Consensus       213 ~~~~~~~~v~~~------------------------------------~~~~~~l~sg~~dg~i~iwd~~~~~~~~~---  253 (293)
T d1p22a2         213 VLEGHEELVRCI------------------------------------RFDNKRIVSGAYDGKIKVWDLVAALDPRA---  253 (293)
T ss_dssp             EECCCSSCEEEE------------------------------------ECCSSEEEEEETTSCEEEEEHHHHTSTTS---
T ss_pred             eecccceeeeec------------------------------------cccceEEEEEcCCCEEEEEECCCCccccc---
Confidence            999888877654                                    55788999999999999999866433211   


Q ss_pred             ccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          664 KSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       664 ~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                         ......+..+..|..+|++++|+  +.+|++|+.||+
T Consensus       254 ---~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~  288 (293)
T d1p22a2         254 ---PAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDT  288 (293)
T ss_dssp             ---CTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSE
T ss_pred             ---cCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCE
Confidence               11224466788899999999994  568999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=2.6e-29  Score=257.59  Aligned_cols=240  Identities=15%  Similarity=0.207  Sum_probs=200.8

Q ss_pred             cceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 005277          412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIW  490 (704)
Q Consensus       412 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~dg~i~lw  490 (704)
                      ...+.+.||.++|++++|+|++++|+||+.||+|++||+.+++....+. +|...|++++|+|++.+ ++++.|+.+++|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~   81 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVV   81 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEe
Confidence            3567889999999999999999999999999999999999999888874 68999999999999974 566789999999


Q ss_pred             ECCCCce---eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277          491 SMDRIQP---LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       491 d~~~~~~---~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      +......   ......+...+.+++|+|++.++++++ ++.+++|+..  +.....  ....+.+++|+|++++|++|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l~~g~~  156 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFVAVGGQ  156 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEEEEEET
T ss_pred             ccCCccccccccccccccccccccccccccccccccc-cccccccccc--cccccc--cccccccccccccccccccccc
Confidence            9865321   222345678899999999999887765 5689999853  333333  3456889999999999999999


Q ss_pred             CCeEEEEeCCCCeeee-eecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277          568 DGTIMMWDLASGRCVT-PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT  646 (704)
Q Consensus       568 dg~I~iwdl~~~~~~~-~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~  646 (704)
                      ||.|++||+.+++... ....|...|.++.|                                  +|++.+|++|+.||.
T Consensus       157 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~----------------------------------~~~~~~l~~~~~d~~  202 (299)
T d1nr0a2         157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAF----------------------------------SNNGAFLVATDQSRK  202 (299)
T ss_dssp             TSEEEEEEEETTEEEEEEEEECSSCEEEEEE----------------------------------CTTSSEEEEEETTSC
T ss_pred             ccccccccccccccccccccccccccccccc----------------------------------ccccccccccccccc
Confidence            9999999998887544 34568899999999                                  999999999999999


Q ss_pred             EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       647 V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      |++||+.++...            .....+..|..+|.+++|+|++.+|++|+.||+
T Consensus       203 i~~~~~~~~~~~------------~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~  247 (299)
T d1nr0a2         203 VIPYSVANNFEL------------AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS  247 (299)
T ss_dssp             EEEEEGGGTTEE------------SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccc------------cccccccccccccccccccccccceEEEcCCCE
Confidence            999999876543            234456778899999999999999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.4e-30  Score=274.03  Aligned_cols=257  Identities=19%  Similarity=0.266  Sum_probs=194.0

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      ..+|.+.|.++++++  ++|++|+.|++|+|||........                      ..........|...+..
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~----------------------~~~~~~~~~~~~~~~~~   65 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN----------------------PKDKSYSHFVHKSGLHH   65 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC----------------------GGGGEEEEECCTTCEEE
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCc----------------------ccceeEeeeeccCCceE
Confidence            468999999999875  689999999999999976522110                      01111222234333322


Q ss_pred             ------EEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEe----------ecCCcCeeEEEEcCC-----CCEEEEEeCC
Q 005277          427 ------ASFSP-LGDFILSSSADTTIRLWSTKLNANLVCY----------KGHNYPVWDVQFNPQ-----GHYFASSSHD  484 (704)
Q Consensus       427 ------l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~----------~~h~~~V~~v~~sp~-----~~~l~sgs~d  484 (704)
                            +..+. ++.++++++.||.|++|++........+          ..+...++.++|.++     +.++++++.|
T Consensus        66 ~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  145 (393)
T d1sq9a_          66 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK  145 (393)
T ss_dssp             EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred             eeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCC
Confidence                  22222 2246779999999999997654332211          124556888888875     4689999999


Q ss_pred             CeEEEEECCCCc-----------e-------eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe---
Q 005277          485 RTARIWSMDRIQ-----------P-------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF---  543 (704)
Q Consensus       485 g~i~lwd~~~~~-----------~-------~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~---  543 (704)
                      |++++|++....           .       ......+...+.+++|+|++ +|++|+.||+|++||+.+++++..+   
T Consensus       146 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~  224 (393)
T d1sq9a_         146 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ  224 (393)
T ss_dssp             SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred             CcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccc
Confidence            999999974221           0       11112345668999999997 8999999999999999999887654   


Q ss_pred             ---ecCCCCEEEEEEecCCCEEEEEeCCC---eEEEEeCCCCeeeeeec-------------CCCceeeeeeeeeeehcc
Q 005277          544 ---IGHRSMILSLAMSPDGRYMASGDEDG---TIMMWDLASGRCVTPLM-------------GHTSCVWTLAYRFLLLVT  604 (704)
Q Consensus       544 ---~~h~~~i~~l~~spdg~~l~sg~~dg---~I~iwdl~~~~~~~~~~-------------~h~~~V~sl~~~~~~~~~  604 (704)
                         .+|..+|.+++|+|+|++|++|+.|+   .|++||+.+++.+..+.             +|.+.|++++|       
T Consensus       225 ~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~f-------  297 (393)
T d1sq9a_         225 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF-------  297 (393)
T ss_dssp             C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE-------
T ss_pred             cccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeecc-------
Confidence               46889999999999999999999887   49999999998877663             79999999999       


Q ss_pred             ccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccc
Q 005277          605 NAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE  662 (704)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~  662 (704)
                                                 +|++++|+|||.||+|+|||+.+++.+..+.
T Consensus       298 ---------------------------spd~~~l~S~s~D~~v~vWd~~~g~~~~~l~  328 (393)
T d1sq9a_         298 ---------------------------NDSGETLCSAGWDGKLRFWDVKTKERITTLN  328 (393)
T ss_dssp             ---------------------------CSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ---------------------------CCCCCeeEEECCCCEEEEEECCCCCEEEEEC
Confidence                                       9999999999999999999999987765543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.6e-29  Score=252.63  Aligned_cols=273  Identities=19%  Similarity=0.211  Sum_probs=216.7

Q ss_pred             EEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (704)
Q Consensus       343 ~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (704)
                      ...++.+|..+|+|++|+|    |++|+.||+|++||+.+                                 ...+|..
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~---------------------------------~~~~h~~   47 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS---------------------------------MHQDHSN   47 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTE---------------------------------EECCCCS
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCC---------------------------------CCCCCCC
Confidence            3557899999999999998    99999999999999754                                 1247999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~  502 (704)
                      .|.++.|++++ .+++++.|++|++|++...       .....+..+.+++++..++++ .++.+.+|+..++..+..+.
T Consensus        48 ~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  118 (287)
T d1pgua2          48 LIVSLDNSKAQ-EYSSISWDDTLKVNGITKH-------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVR  118 (287)
T ss_dssp             CEEEEECCSTT-CCEEEETTTEEEETTEEEE-------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEecCCC-eEEEEeecccccccccccc-------ccccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecc
Confidence            99999999765 5789999999999997632       134457788999888766665 56778999999988888776


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEECCC-cEEEEeCCCCcEEEEee-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          503 GHLSDVDCVRWHINCNYIATGSSDK-TVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg-~I~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      .+ ..  +.+++|+++.+++++.++ .|++|++........+. .|...+++++|+|+|.+|++|+.||.|++||+.++.
T Consensus       119 ~~-~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~  195 (287)
T d1pgua2         119 LN-SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE  195 (287)
T ss_dssp             CS-SC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             cc-ce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccc
Confidence            43 33  456678888999888775 79999998766555543 577899999999999999999999999999999988


Q ss_pred             eee-eecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 005277          581 CVT-PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL  659 (704)
Q Consensus       581 ~~~-~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~  659 (704)
                      ... .+.+|...|.+++|.+...                        ...+...++.++++|+.||+|+|||+.++..  
T Consensus       196 ~~~~~~~~h~~~v~~~~~~p~~~------------------------~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~--  249 (287)
T d1pgua2         196 VKTSRWAFRTSKINAISWKPAEK------------------------GANEEEIEEDLVATGSLDTNIFIYSVKRPMK--  249 (287)
T ss_dssp             EEECCSCCCSSCEEEEEECCCC------------------------------CCSCCEEEEEETTSCEEEEESSCTTC--
T ss_pred             cccccccccccccceeeeccccc------------------------ccccccCCCCeeEeecCCCeEEEEECCCCCe--
Confidence            755 4678999999999832110                        1111256788999999999999999976542  


Q ss_pred             ccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          660 KTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       660 ~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                                  .+..+..|...|.++.|+|++. |++++.||+
T Consensus       250 ------------~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~  280 (287)
T d1pgua2         250 ------------IIKALNAHKDGVNNLLWETPST-LVSSGADAC  280 (287)
T ss_dssp             ------------CEEETTSSTTCEEEEEEEETTE-EEEEETTSC
T ss_pred             ------------EEEEeCCCCCCeEEEEECCCCE-EEEEECCCe
Confidence                        3556678999999999999985 677888875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.8e-29  Score=256.73  Aligned_cols=282  Identities=12%  Similarity=0.051  Sum_probs=212.9

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      ..+|.++|++++|+|++++||+|+.||+|+|||+.....                         ........+|.++|.+
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~-------------------------~~~~~~~~~h~~~V~~   61 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-------------------------NVDLLQSLRYKHPLLC   61 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-------------------------EEEEEEEEECSSCEEE
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc-------------------------ceEEEEecCCCCCEEE
Confidence            357888999999999999999999999999999875211                         1122334479999999


Q ss_pred             EEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcC-eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE----
Q 005277          427 ASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYP-VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI----  500 (704)
Q Consensus       427 l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~-V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~----  500 (704)
                      ++|+|++ .+|++|+.||+|++|++...........+... .....+.+++..+++++.++++++||++.......    
T Consensus        62 v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~  141 (342)
T d1yfqa_          62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN  141 (342)
T ss_dssp             EEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred             EEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecc
Confidence            9999875 47889999999999999988877776655444 34555666889999999999999999865433222    


Q ss_pred             eccC--CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEE---EEeecCCCCEEEEEEec-CCCEEEEEeCCCeEEEE
Q 005277          501 MAGH--LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV---RIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMW  574 (704)
Q Consensus       501 ~~~~--~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~---~~~~~h~~~i~~l~~sp-dg~~l~sg~~dg~I~iw  574 (704)
                      ...+  ......+.+.+.++.+++++.|+.|++||++.+...   .....+...+.+..+.+ ++..+++++.||.+.+|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~  221 (342)
T d1yfqa_         142 LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE  221 (342)
T ss_dssp             SCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred             cccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEE
Confidence            2222  233456677889999999999999999999876532   22334455566666554 67899999999999999


Q ss_pred             eCCCCeeee---------------eecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEE
Q 005277          575 DLASGRCVT---------------PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA  639 (704)
Q Consensus       575 dl~~~~~~~---------------~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~la  639 (704)
                      ++.......               ...+|...|.+++|                                  +|++.+|+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----------------------------------sp~~~~la  267 (342)
T d1yfqa_         222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF----------------------------------SPRHKFLY  267 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE----------------------------------CTTTCCEE
T ss_pred             EecCCcceeeccccceeeeeeeccCCCcccccceeEEe----------------------------------cCCccEEE
Confidence            986542211               11345567788888                                  99999999


Q ss_pred             EEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          640 SGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       640 sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ||+.||.|+|||+.+++.               +..+..+ .++..++|+|++.+||+|+.|++
T Consensus       268 sg~~Dg~v~vWD~~~~~~---------------l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~  315 (342)
T d1yfqa_         268 TAGSDGIISCWNLQTRKK---------------IKNFAKF-NEDSVVKIACSDNILCLATSDDT  315 (342)
T ss_dssp             EEETTSCEEEEETTTTEE---------------EEECCCC-SSSEEEEEEECSSEEEEEEECTH
T ss_pred             EECCCCEEEEEECCCCcE---------------EEEecCC-CCCEEEEEEeCCCEEEEEEcCCc
Confidence            999999999999998754               3334322 34566788999999999888753

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.2e-26  Score=236.87  Aligned_cols=279  Identities=19%  Similarity=0.334  Sum_probs=211.2

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCC-------------
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE-------------  395 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~-------------  395 (704)
                      ...+++|+.... .+..++.+|.+.|+|++|+|+ .+|++|+.||.|++|++...............             
T Consensus        32 Dg~i~vWd~~~~-~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (355)
T d1nexb2          32 DKMIRVYDSINK-KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK  109 (355)
T ss_dssp             TTEEEEEETTTT-EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEE
T ss_pred             CCeEEEEECCCC-cEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccc
Confidence            357888876543 456678899999999999986 58999999999999998764322111100000             


Q ss_pred             ------C-CCCCcc-------------------cccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 005277          396 ------N-DTTPRE-------------------DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWS  449 (704)
Q Consensus       396 ------~-~~~~~~-------------------~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd  449 (704)
                            . ......                   .................|...|..  +.++++++++++.|+.|++||
T Consensus       110 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~d~~i~~~d  187 (355)
T d1nexb2         110 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWD  187 (355)
T ss_dssp             EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE--EEEETTEEEEEETTSCEEEEE
T ss_pred             eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccc--cccccceeeeecccceeeeee
Confidence                  0 000000                   000001111122233345555544  445688999999999999999


Q ss_pred             CCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcE
Q 005277          450 TKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV  529 (704)
Q Consensus       450 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I  529 (704)
                      +.+++.+....++...+.++.|+|++.++++++.|++|++||++++..+..+.+|...|.+++|++  ++|++|+.||.|
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i  265 (355)
T d1nexb2         188 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSI  265 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEE
T ss_pred             cccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeeccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999864  699999999999


Q ss_pred             EEEeCCCCcEEEEeecCCCCEEEE-EEecCCCEEEEEeCCCeEEEEeCCCCeeee-eecCCCceeeeeeeeeeehccccc
Q 005277          530 RLWDVSSGECVRIFIGHRSMILSL-AMSPDGRYMASGDEDGTIMMWDLASGRCVT-PLMGHTSCVWTLAYRFLLLVTNAY  607 (704)
Q Consensus       530 ~iwd~~~~~~~~~~~~h~~~i~~l-~~spdg~~l~sg~~dg~I~iwdl~~~~~~~-~~~~h~~~V~sl~~~~~~~~~~~~  607 (704)
                      ++||++++...  +..|...+.++ .+++++++|++| .||.|++||+++++++. .+.+|...|++++|          
T Consensus       266 ~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~----------  332 (355)
T d1nexb2         266 RGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNF----------  332 (355)
T ss_dssp             EEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEE----------
T ss_pred             cccccccccee--cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEE----------
Confidence            99999987654  34455656555 556777777665 58999999999999885 46789999999999          


Q ss_pred             cccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEe
Q 005277          608 LKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD  651 (704)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd  651 (704)
                                              +++ .++++++.||.++||.
T Consensus       333 ------------------------~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         333 ------------------------KGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             ------------------------ETT-EEEEEEESSSCEEEEE
T ss_pred             ------------------------cCC-eEEEEEECCCcEEEEE
Confidence                                    776 4788899999976654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-25  Score=230.87  Aligned_cols=281  Identities=22%  Similarity=0.446  Sum_probs=211.1

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCC---CCcccc-
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDT---TPREDI-  404 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~---~~~~~~-  404 (704)
                      ...+++|+.... .+..++.+|.+.|.+++|+|+  +|++|+.|+.+++|+...................   ...... 
T Consensus        36 Dg~i~vWd~~~~-~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (342)
T d2ovrb2          36 DNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS  112 (342)
T ss_dssp             TSCEEEEETTTC-CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEE
T ss_pred             CCeEEEEECCCC-CEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccc
Confidence            356888876543 345678899999999999875  9999999999999998764322211110000000   000000 


Q ss_pred             --------cCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC
Q 005277          405 --------IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH  476 (704)
Q Consensus       405 --------~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~  476 (704)
                              ............+..+...  ...+.+....+++++.|+.|++||......+..+.+|...+..+.+  ++.
T Consensus       113 ~~~d~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~  188 (342)
T d2ovrb2         113 GSRDATLRVWDIETGQCLHVLMGHVAA--VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI  188 (342)
T ss_dssp             EETTSEEEEEESSSCCEEEEEECCSSC--EEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSS
T ss_pred             cccceeEEEeecccccceeeeeccccc--ceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCC
Confidence                    0000011111122222222  2233445678899999999999999999999999999877766555  788


Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec---CCCCEEEE
Q 005277          477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSL  553 (704)
Q Consensus       477 ~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~i~~l  553 (704)
                      ++++|+.||.|++||++..+++..+.+|...+.++.+++  ++|++|+.||.|++||+...+....+..   |...+.++
T Consensus       189 ~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  266 (342)
T d2ovrb2         189 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL  266 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE
T ss_pred             EEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeec
Confidence            999999999999999999999999999999999888764  6999999999999999999988887765   44566666


Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec-----CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277          554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-----GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF  628 (704)
Q Consensus       554 ~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~-----~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (704)
                      .+  +++++++|+.||.|++||+++++.+..+.     +|...|++++|                               
T Consensus       267 ~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~-------------------------------  313 (342)
T d2ovrb2         267 QF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA-------------------------------  313 (342)
T ss_dssp             EE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE-------------------------------
T ss_pred             cc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEE-------------------------------
Confidence            65  56799999999999999999999887763     57789999999                               


Q ss_pred             cccCCCCCEEEEEeCCCc----EEEEeCCC
Q 005277          629 GCASCEGSLLASGSADCT----VKLWDVTT  654 (704)
Q Consensus       629 ~~~s~~g~~lasgs~Dg~----V~iWd~~~  654 (704)
                         +|++.+|++|+.||+    |++||+..
T Consensus       314 ---s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         314 ---SNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ---CSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ---CCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence               999999999999986    99999874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=7e-27  Score=244.73  Aligned_cols=296  Identities=10%  Similarity=0.015  Sum_probs=214.7

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC
Q 005277          356 CASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD  434 (704)
Q Consensus       356 ~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  434 (704)
                      .-.||| ||+++|+++ +|.|.+|++...                            ...+  .+|.+.|.+++|+|||+
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~----------------------------~~~~--~~~~~~v~~~~~spDg~   55 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGT----------------------------YVLK--VPEPLRIRYVRRGGDTK   55 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSS----------------------------BEEE--CSCCSCEEEEEECSSSE
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCC----------------------------cEEE--ccCCCCEEEEEECCCCC
Confidence            457999 999999986 689999998651                            1222  36899999999999999


Q ss_pred             EEEEEeCCC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEE
Q 005277          435 FILSSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (704)
Q Consensus       435 ~l~s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~  512 (704)
                      +|++++.+.  .|++||..++.. ..+..|...|.+++|+|+|+++++++.++.+++|++.+++....+..|...+.+++
T Consensus        56 ~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (360)
T d1k32a3          56 VAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFT  134 (360)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEE
T ss_pred             EEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchh
Confidence            998766553  799999987654 46778999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEE----------CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277          513 WHINCNYIATGS----------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (704)
Q Consensus       513 ~~p~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~  582 (704)
                      |+|+|++|+.++          .++.+++||+.+++... ...+...+.+++|+|+|++|++++.++.+.+||.......
T Consensus       135 ~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~  213 (360)
T d1k32a3         135 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS  213 (360)
T ss_dssp             ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEE
T ss_pred             hccceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEccccccccee
Confidence            999999998654          34569999999887665 4467788999999999999999999999999997654322


Q ss_pred             -------eeecCCCceeeeeeeeeeehc--------cccccccccc-ccccee--e--e--eeeEEeecccCCCCCEEEE
Q 005277          583 -------TPLMGHTSCVWTLAYRFLLLV--------TNAYLKISDK-VSTGFL--F--Y--SLTIIYFGCASCEGSLLAS  640 (704)
Q Consensus       583 -------~~~~~h~~~V~sl~~~~~~~~--------~~~~~~~~~~-~~~~~~--~--~--~~~~~~~~~~s~~g~~las  640 (704)
                             ..+..|...+..+.|......        .....+++.. ...+..  +  .  ....+.....++.+.++++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (360)
T d1k32a3         214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG  293 (360)
T ss_dssp             CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHC
T ss_pred             eccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEe
Confidence                   222233333333322110000        0000000000 000000  0  0  0111222222444556788


Q ss_pred             EeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          641 GSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       641 gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ++.++.|++||+.+++..                   .+...|.+++|||||+.|++++.||+
T Consensus       294 ~~~~~~i~~~d~~~~~~~-------------------~~~~~v~~~~~SpDG~~l~~~~~Dg~  337 (360)
T d1k32a3         294 APEKGVLLKYDVKTRKVT-------------------EVKNNLTDLRLSADRKTVMVRKDDGK  337 (360)
T ss_dssp             CCCCEEEEEEETTTCCEE-------------------EEEEEEEEEEECTTSCEEEEEETTSC
T ss_pred             cCCCCEEEEEECCCCeEE-------------------EecCCcCEEEECCCCCEEEEEECCCe
Confidence            889999999999875421                   23356899999999999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4e-26  Score=244.15  Aligned_cols=214  Identities=15%  Similarity=0.223  Sum_probs=168.7

Q ss_pred             CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC-----CEEE
Q 005277          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG-----DFIL  437 (704)
Q Consensus       363 g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-----~~l~  437 (704)
                      +.++++++.||.|++|++............                  .........+...+..++|.++.     .+++
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFE------------------KLDLLDSDMKKHSFWALKWGASNDRLLSHRLV  140 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEE------------------EECCSCTTGGGSCEEEEEEECCC----CEEEE
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeecc------------------ccceeeeccCCCceEEEEEecCCCcccccEEE
Confidence            567889999999999998653211110000                  00001112355678888887764     5789


Q ss_pred             EEeCCCeEEEEeCCCCce------------------eEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277          438 SSSADTTIRLWSTKLNAN------------------LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (704)
Q Consensus       438 s~s~Dg~I~lwd~~~~~~------------------~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~  499 (704)
                      +++.||++++|++.....                  ......+...+.+++|+|++ +|++|+.||+|++||+.+++++.
T Consensus       141 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~  219 (393)
T d1sq9a_         141 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY  219 (393)
T ss_dssp             EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE
T ss_pred             EEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccc
Confidence            999999999999753211                  11112355668999999998 89999999999999999988776


Q ss_pred             Ee------ccCCCCeeEEEEcCCCCEEEEEECCCc---EEEEeCCCCcEEEEee-------------cCCCCEEEEEEec
Q 005277          500 IM------AGHLSDVDCVRWHINCNYIATGSSDKT---VRLWDVSSGECVRIFI-------------GHRSMILSLAMSP  557 (704)
Q Consensus       500 ~~------~~~~~~V~~v~~~p~~~~l~tgs~dg~---I~iwd~~~~~~~~~~~-------------~h~~~i~~l~~sp  557 (704)
                      .+      .+|...|.+++|+|++++|++|+.|++   |++||+.+++++..+.             +|.+.|++++|+|
T Consensus       220 ~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp  299 (393)
T d1sq9a_         220 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND  299 (393)
T ss_dssp             EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS
T ss_pred             ccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC
Confidence            54      468899999999999999999999875   8999999998887763             7999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeee
Q 005277          558 DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTL  595 (704)
Q Consensus       558 dg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl  595 (704)
                      +|++|++|+.||+|++||+.+++++.++.+|...|...
T Consensus       300 d~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~  337 (393)
T d1sq9a_         300 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIE  337 (393)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSG
T ss_pred             CCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCC
Confidence            99999999999999999999999999999999888653

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.6e-25  Score=227.91  Aligned_cols=258  Identities=12%  Similarity=0.053  Sum_probs=193.4

Q ss_pred             ceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE---EeecCCcCeeEEEEcCC-CCEEEEEeCCCeEE
Q 005277          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV---CYKGHNYPVWDVQFNPQ-GHYFASSSHDRTAR  488 (704)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~---~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~  488 (704)
                      .+....+|...|++|+|+|++++|++|+.||+|+|||+.++....   ...+|..+|.+++|+|+ +.+|++|+.||+|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            456778999999999999999999999999999999998765433   33469999999999986 56899999999999


Q ss_pred             EEECCCCceeEEeccCCCCe-eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE----EeecC--CCCEEEEEEecCCCE
Q 005277          489 IWSMDRIQPLRIMAGHLSDV-DCVRWHINCNYIATGSSDKTVRLWDVSSGECVR----IFIGH--RSMILSLAMSPDGRY  561 (704)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V-~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~----~~~~h--~~~i~~l~~spdg~~  561 (704)
                      +|++...........+...+ ....+.++...+++++.++++++||++++....    ....+  ......+.+.+++..
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCc
Confidence            99999887777766555444 455566788999999999999999987543222    22222  234556778889999


Q ss_pred             EEEEeCCCeEEEEeCCCCeeeeee---cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEE
Q 005277          562 MASGDEDGTIMMWDLASGRCVTPL---MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL  638 (704)
Q Consensus       562 l~sg~~dg~I~iwdl~~~~~~~~~---~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  638 (704)
                      +++++.||.|++||+.........   ..+...+.+..+                                 .+.++..+
T Consensus       163 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~  209 (342)
T d1yfqa_         163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL---------------------------------LPKEQEGY  209 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE---------------------------------CSGGGCEE
T ss_pred             eeeecCCCcEEEEecccCcccceeeeecccccceeeeEe---------------------------------ecCCCCEE
Confidence            999999999999999876543322   223333333332                                 15677899


Q ss_pred             EEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277          639 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  703 (704)
Q Consensus       639 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt  703 (704)
                      ++++.||.+.+|++..........................+..+|.+++|+|++.+||+|+.||+
T Consensus       210 ~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~  274 (342)
T d1yfqa_         210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred             EeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCE
Confidence            99999999999999876544332221111111223344567788999999999999999999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.3e-24  Score=220.99  Aligned_cols=243  Identities=18%  Similarity=0.187  Sum_probs=196.8

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ...+++|....      ....|...|.+++|++++ .+++++.|++|++|++...                         
T Consensus        30 Dg~v~~Wd~~~------~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~-------------------------   77 (287)
T d1pgua2          30 DGRIMEWSSSS------MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH-------------------------   77 (287)
T ss_dssp             TSCEEETTTTE------EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE-------------------------
T ss_pred             CCeEEEEECCC------CCCCCCCCEEEEEecCCC-eEEEEeecccccccccccc-------------------------
Confidence            45788887542      245788999999999765 5788999999999997641                         


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC-eE
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-TA  487 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg-~i  487 (704)
                                .+...+.++.+++++..+++++ ++.+.+|+..++..+..+..+ .++  .++++++..+++++.++ .+
T Consensus        78 ----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v  143 (287)
T d1pgua2          78 ----------EFGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEEGNTI  143 (287)
T ss_dssp             ----------ECSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETTTSCE
T ss_pred             ----------ccccceeeeeeccCCceEEEee-cccceeeeccceeeeeecccc-cee--eeeeccCcceeeecccccee
Confidence                      0223467888998887666654 567899999988888877644 343  45677788888888765 79


Q ss_pred             EEEECCCCceeEEec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE-EeecCCCCEEEEEEecC-------
Q 005277          488 RIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPD-------  558 (704)
Q Consensus       488 ~lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~-~~~~h~~~i~~l~~spd-------  558 (704)
                      ++|++........+. .|...+.+++|+|++.+|++|+.||.|++||+.++.... .+.+|..+|.+++|+|.       
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~  223 (287)
T d1pgua2         144 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE  223 (287)
T ss_dssp             EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred             eeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccc
Confidence            999998766555544 477889999999999999999999999999999988765 36789999999999875       


Q ss_pred             ---CCEEEEEeCCCeEEEEeCCC-CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC
Q 005277          559 ---GRYMASGDEDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE  634 (704)
Q Consensus       559 ---g~~l~sg~~dg~I~iwdl~~-~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  634 (704)
                         +.+|++|+.|+.|++||+.+ ++.+..+.+|...|+++.|                                  +++
T Consensus       224 ~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~----------------------------------~~~  269 (287)
T d1pgua2         224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW----------------------------------ETP  269 (287)
T ss_dssp             CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEE----------------------------------EET
T ss_pred             cCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEE----------------------------------CCC
Confidence               46899999999999999976 5667778899999999999                                  777


Q ss_pred             CCEEEEEeCCCcEEEEeC
Q 005277          635 GSLLASGSADCTVKLWDV  652 (704)
Q Consensus       635 g~~lasgs~Dg~V~iWd~  652 (704)
                      + .|+++|.||+|++|++
T Consensus       270 ~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         270 S-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             T-EEEEEETTSCEEEEEE
T ss_pred             C-EEEEEECCCeEEEEEE
Confidence            5 6899999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.8e-24  Score=213.19  Aligned_cols=248  Identities=26%  Similarity=0.532  Sum_probs=200.8

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ...+++|+.... .+..++.+|.+.|+|++|  ++++|++|+.||.|++|++.....                       
T Consensus        34 Dg~i~vWd~~~~-~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~-----------------------   87 (293)
T d1p22a2          34 DNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM-----------------------   87 (293)
T ss_dssp             SSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE-----------------------
T ss_pred             CCeEEEEECCCC-cEEEEEecCCCCEeeeec--ccceeecccccccccccccccccc-----------------------
Confidence            356888876543 345577889999999987  578999999999999999876221                       


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg  485 (704)
                           ......+...  ...+.+....++++..++.+++|+......   ...+..|...|..+.+.  ...+++++.|+
T Consensus        88 -----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~  158 (293)
T d1p22a2          88 -----LNTLIHHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDR  158 (293)
T ss_dssp             -----EEEECCCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred             -----cccccccccc--cccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCC
Confidence                 1111222222  234455677899999999999999987654   34456788888887775  55788999999


Q ss_pred             eEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (704)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg  565 (704)
                      .+++||+++.+.+..+.++...+..+.++  +.++++++.||+|++||++++..+..+.+|...+.+  +++++.+|++|
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg  234 (293)
T d1p22a2         159 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSG  234 (293)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEE
T ss_pred             ceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEE
Confidence            99999999999999999999888888775  568999999999999999999999999999888865  56688999999


Q ss_pred             eCCCeEEEEeCCC---------CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC
Q 005277          566 DEDGTIMMWDLAS---------GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS  636 (704)
Q Consensus       566 ~~dg~I~iwdl~~---------~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  636 (704)
                      +.||.|++||+.+         ...+..+.+|.+.|++++|                                    ++.
T Consensus       235 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~------------------------------------d~~  278 (293)
T d1p22a2         235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF------------------------------------DEF  278 (293)
T ss_dssp             ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE------------------------------------CSS
T ss_pred             cCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE------------------------------------cCC
Confidence            9999999999753         3467788899999999887                                    456


Q ss_pred             EEEEEeCCCcEEEEe
Q 005277          637 LLASGSADCTVKLWD  651 (704)
Q Consensus       637 ~lasgs~Dg~V~iWd  651 (704)
                      +|+|||.||+|+|||
T Consensus       279 ~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         279 QIVSSSHDDTILIWD  293 (293)
T ss_dssp             CEEECCSSSEEEEEC
T ss_pred             EEEEEecCCEEEEeC
Confidence            899999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.5e-24  Score=226.69  Aligned_cols=258  Identities=9%  Similarity=0.050  Sum_probs=198.5

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDS--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (704)
                      +..+++++.......   ...|...|.+++|||||++|++++.+.  .|++|++.+.                       
T Consensus        23 ~g~v~v~d~~~~~~~---~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~-----------------------   76 (360)
T d1k32a3          23 RGQAFIQDVSGTYVL---KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG-----------------------   76 (360)
T ss_dssp             TTEEEEECTTSSBEE---ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC-----------------------
T ss_pred             CCeEEEEECCCCcEE---EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC-----------------------
Confidence            456778776544332   247889999999999999998776553  7999998751                       


Q ss_pred             CCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe----
Q 005277          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----  482 (704)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs----  482 (704)
                            ....+.+|.+.|.+++|+|++++|++++.++.+++|++.+++....+..|...+.+++|+|+|++|+.++    
T Consensus        77 ------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~  150 (360)
T d1k32a3          77 ------KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH  150 (360)
T ss_dssp             ------CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECS
T ss_pred             ------cEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccc
Confidence                  2345678999999999999999999999999999999999999999999999999999999999998654    


Q ss_pred             ------CCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE-------EEEeecCC--
Q 005277          483 ------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-------VRIFIGHR--  547 (704)
Q Consensus       483 ------~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-------~~~~~~h~--  547 (704)
                            .++.+++|++.+++.... ..+...+.+++|+|+|++|++++.++.+.+||......       ......|.  
T Consensus       151 ~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  229 (360)
T d1k32a3         151 GETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS  229 (360)
T ss_dssp             STTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred             cceeeccccceeeeccccCceeee-cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCc
Confidence                  456799999988765544 45677889999999999999999999999998754321       11111111  


Q ss_pred             ----------------------------------CCEEEEEEecCCC-------------EEEEEeCCCeEEEEeCCCCe
Q 005277          548 ----------------------------------SMILSLAMSPDGR-------------YMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       548 ----------------------------------~~i~~l~~spdg~-------------~l~sg~~dg~I~iwdl~~~~  580 (704)
                                                        +....+...+++.             ++++++.++.|++||+.+++
T Consensus       230 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  309 (360)
T d1k32a3         230 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK  309 (360)
T ss_dssp             CCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC
T ss_pred             cccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe
Confidence                                              1222333333222             23445567788888887765


Q ss_pred             eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277          581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK  657 (704)
Q Consensus       581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~  657 (704)
                      ..    .|.+.|.+++|                                  ||||++|++++.||.|++||+.++..
T Consensus       310 ~~----~~~~~v~~~~~----------------------------------SpDG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         310 VT----EVKNNLTDLRL----------------------------------SADRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             EE----EEEEEEEEEEE----------------------------------CTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred             EE----EecCCcCEEEE----------------------------------CCCCCEEEEEECCCeEEEEECCCCCc
Confidence            42    24456777877                                  99999999999999999999998765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=6.2e-22  Score=213.80  Aligned_cols=295  Identities=11%  Similarity=0.042  Sum_probs=193.8

Q ss_pred             CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCC
Q 005277          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD  442 (704)
Q Consensus       363 g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D  442 (704)
                      .-++++++.||.|+|||+.+                            .+....+..|. .+.+++|+|||++|++++.|
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t----------------------------~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d   82 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDS----------------------------KKIVKVIDTGY-AVHISRMSASGRYLLVIGRD   82 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTT----------------------------CSEEEEEECCS-SEEEEEECTTSCEEEEEETT
T ss_pred             eEEEEEEcCCCEEEEEECCC----------------------------CcEEEEEeCCC-CeeEEEECCCCCEEEEEeCC
Confidence            33567788899999999876                            33445555554 58999999999999999999


Q ss_pred             CeEEEEeCCCCceeEEe-----ecCCcCeeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEeccCCCCeeEEEEc--
Q 005277          443 TTIRLWSTKLNANLVCY-----KGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH--  514 (704)
Q Consensus       443 g~I~lwd~~~~~~~~~~-----~~h~~~V~~v~~sp~~~~l~sg-s~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~--  514 (704)
                      ++|++||+.+++.....     .+|...+.+++|+|+|++++++ ..++++++||..++.+......|...+..+.+.  
T Consensus        83 ~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  162 (426)
T d1hzua2          83 ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE  162 (426)
T ss_dssp             SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred             CCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCC
Confidence            99999999988754432     2566667788889999987554 589999999999999888877666555444444  


Q ss_pred             ---------CCCCEEEEEEC-CCcEEEEeCCCCcE-EEEeecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCCCeee
Q 005277          515 ---------INCNYIATGSS-DKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCV  582 (704)
Q Consensus       515 ---------p~~~~l~tgs~-dg~I~iwd~~~~~~-~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~~~~  582 (704)
                               +++..++.... .+.+.+++...+.. .....++...+..+.|+|+|++++++. .+..+.+|+..+++.+
T Consensus       163 ~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~  242 (426)
T d1hzua2         163 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS  242 (426)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEE
Confidence                     44444443332 23444444443332 122346777889999999999887765 5667999999999887


Q ss_pred             eeecCC---------------Cceeeeeeeeeeehccccccccccccc------cceeee----eeeEEeecccCCCCCE
Q 005277          583 TPLMGH---------------TSCVWTLAYRFLLLVTNAYLKISDKVS------TGFLFY----SLTIIYFGCASCEGSL  637 (704)
Q Consensus       583 ~~~~~h---------------~~~V~sl~~~~~~~~~~~~~~~~~~~~------~~~~~~----~~~~~~~~~~s~~g~~  637 (704)
                      ......               .+.+.....     ..++....+....      ......    ....+...+++|++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~  317 (426)
T d1hzua2         243 ALVDVGKTPHPGRGANFVHPKYGPVWSTSH-----LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH  317 (426)
T ss_dssp             EEEECSSCCCCSCCEEEEETTTEEEEEEEC-----TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSE
T ss_pred             EEeccCCcccccceeeeecCCCCceEEecc-----CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCce
Confidence            665321               112222111     0111111111100      001111    1123445567999999


Q ss_pred             EEE-------EeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEE
Q 005277          638 LAS-------GSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA  697 (704)
Q Consensus       638 las-------gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~  697 (704)
                      |++       |+.|++|+|||+.++.........      .....+..+...|.+++|||||+.+.+
T Consensus       318 l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~------~~~~~~~~~~~rv~~~~fSpDGk~i~v  378 (426)
T d1hzua2         318 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI------AEWADLGEGAKRVVQPEYNKRGDEVWF  378 (426)
T ss_dssp             EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH------HHHHCCCSSCCCEEEEEECSSSSEEEE
T ss_pred             EEEeecCCCCcccCCEEEEEECCCCCcCeEEecc------chhcccCCCCccEEEEEECCCCCEEEE
Confidence            994       567899999999988754332111      112234556777999999999986644

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=2.7e-21  Score=208.67  Aligned_cols=270  Identities=11%  Similarity=0.053  Sum_probs=191.1

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ..++.+|+...-... .++ .++..+..++|||||++|++++.||+|++||+.+......                    
T Consensus        41 dg~v~vwD~~t~~~~-~~l-~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~--------------------   98 (426)
T d1hzua2          41 AGQIALVDGDSKKIV-KVI-DTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV--------------------   98 (426)
T ss_dssp             TTEEEEEETTTCSEE-EEE-ECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE--------------------
T ss_pred             CCEEEEEECCCCcEE-EEE-eCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEE--------------------
Confidence            458888877654332 233 4456799999999999999999999999999986332111                    


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeE-----------EEEcCCCC
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWD-----------VQFNPQGH  476 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~-----------v~~sp~~~  476 (704)
                         ..+....+|.+.+.+++|+|||++++ ++..++++++||..++........|...+..           +.+++++.
T Consensus        99 ---~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~  175 (426)
T d1hzua2          99 ---AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP  175 (426)
T ss_dssp             ---EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred             ---EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCC
Confidence               12233456778888999999999875 5568999999999999988887766554444           44555555


Q ss_pred             EEEEEe-CCCeEEEEECCCCcee-EEeccCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCc---------------
Q 005277          477 YFASSS-HDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGE---------------  538 (704)
Q Consensus       477 ~l~sgs-~dg~i~lwd~~~~~~~-~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~---------------  538 (704)
                      .++... ..+.+.+++....... ....++...+..+.|+|++++++++.. +..+.+|+..+++               
T Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (426)
T d1hzua2         176 EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR  255 (426)
T ss_dssp             EEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSC
T ss_pred             EEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccc
Confidence            444433 2344445554443322 223356677888999999988777653 3445556554433               


Q ss_pred             ---------------------------------------EEEEeecCCCCEEEEEEecCCCEEEE-------EeCCCeEE
Q 005277          539 ---------------------------------------CVRIFIGHRSMILSLAMSPDGRYMAS-------GDEDGTIM  572 (704)
Q Consensus       539 ---------------------------------------~~~~~~~h~~~i~~l~~spdg~~l~s-------g~~dg~I~  572 (704)
                                                             ....+.+|...+..++|+|+|++|++       ++.|++|+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~  335 (426)
T d1hzua2         256 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA  335 (426)
T ss_dssp             CEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEE
T ss_pred             eeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEE
Confidence                                                   33345677888999999999999995       55688999


Q ss_pred             EEeCCCCeeeeee---------cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEE-EE-
Q 005277          573 MWDLASGRCVTPL---------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA-SG-  641 (704)
Q Consensus       573 iwdl~~~~~~~~~---------~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~la-sg-  641 (704)
                      |||+.+++...++         ..|...|.++.|                                  ||||++++ ++ 
T Consensus       336 vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~f----------------------------------SpDGk~i~vs~~  381 (426)
T d1hzua2         336 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY----------------------------------NKRGDEVWFSVW  381 (426)
T ss_dssp             EEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEE----------------------------------CSSSSEEEEEEC
T ss_pred             EEECCCCCcCeEEeccchhcccCCCCccEEEEEE----------------------------------CCCCCEEEEEEe
Confidence            9999998776554         245567888888                                  99999764 33 


Q ss_pred             ---eCCCcEEEEeCCCCcc
Q 005277          642 ---SADCTVKLWDVTTSTK  657 (704)
Q Consensus       642 ---s~Dg~V~iWd~~~~~~  657 (704)
                         +.+|.|+|||..+.+.
T Consensus       382 ~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         382 NGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             CCTTSCCEEEEEETTTTEE
T ss_pred             cCCCCCCeEEEEECCCCeE
Confidence               3688999999998764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=4.2e-19  Score=179.92  Aligned_cols=260  Identities=15%  Similarity=0.135  Sum_probs=201.4

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ..+.+++.....+.  ........+..++|+|||++| ++++.++.|++||+.+.                         
T Consensus        12 ~~v~v~D~~t~~~~--~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~-------------------------   64 (301)
T d1l0qa2          12 DNISVIDVTSNKVT--ATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN-------------------------   64 (301)
T ss_dssp             TEEEEEETTTTEEE--EEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-------------------------
T ss_pred             CEEEEEECCCCeEE--EEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-------------------------
Confidence            45667765544332  234455678999999999987 56678999999998762                         


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEE-EEeCCCe
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRT  486 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-sgs~dg~  486 (704)
                         .....+..|. .+..+.|++++..++ ++..++.+.+|+..+++....+..+. .+.++.|+|++..++ ++..++.
T Consensus        65 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~~~~~~~~~~~  139 (301)
T d1l0qa2          65 ---NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKT  139 (301)
T ss_dssp             ---EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred             ---ceeeeeeccc-cccccccccccccccccccccceeeecccccceeeeeccccc-cceEEEeecCCCeeeeeeccccc
Confidence               2333444444 468899999998665 56678899999999998888887554 567899999998875 4557889


Q ss_pred             EEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECC-CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (704)
Q Consensus       487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg  565 (704)
                      +.+|+..+...+..+..+ ..+.++.++|++..+++++.+ +.+.+|+............ ...+..++|+++|..++++
T Consensus       140 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~  217 (301)
T d1l0qa2         140 VSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVT  217 (301)
T ss_dssp             EEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEE
T ss_pred             eeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccc
Confidence            999999999888877644 568899999999999888765 5677888777776666544 4567889999999988765


Q ss_pred             e---CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEE-EEE
Q 005277          566 D---EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL-ASG  641 (704)
Q Consensus       566 ~---~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-asg  641 (704)
                      +   .++.|.+||+.+++.+..+..+ ..+..++|                                  +|+|++| +++
T Consensus       218 ~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~----------------------------------spdg~~l~va~  262 (301)
T d1l0qa2         218 NVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAV----------------------------------TPDGKKVYVAL  262 (301)
T ss_dssp             EECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEE----------------------------------CTTSSEEEEEE
T ss_pred             cccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEE----------------------------------eCCCCEEEEEE
Confidence            4   3468999999999998887654 44678888                                  9999976 677


Q ss_pred             eCCCcEEEEeCCCCccc
Q 005277          642 SADCTVKLWDVTTSTKV  658 (704)
Q Consensus       642 s~Dg~V~iWd~~~~~~~  658 (704)
                      +.|++|++||+.+++.+
T Consensus       263 ~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         263 SFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             TTTTEEEEEETTTTEEE
T ss_pred             CCCCeEEEEECCCCeEE
Confidence            88999999999988654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=3.9e-20  Score=199.94  Aligned_cols=194  Identities=10%  Similarity=0.041  Sum_probs=151.8

Q ss_pred             CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCC
Q 005277          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD  442 (704)
Q Consensus       363 g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D  442 (704)
                      .-++++.+.+|.|.|||..+                            .+....+..| ..+..++|||||+++++++.|
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t----------------------------~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~d   82 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGST----------------------------YEIKTVLDTG-YAVHISRLSASGRYLFVIGRD   82 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTT----------------------------CCEEEEEECS-SCEEEEEECTTSCEEEEEETT
T ss_pred             cEEEEEEcCCCEEEEEECCC----------------------------CcEEEEEeCC-CCeeEEEECCCCCEEEEEcCC
Confidence            34468888999999999876                            3344555555 368999999999999999999


Q ss_pred             CeEEEEeCCCCceeE--Ee---ecCCcCeeEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeEEeccC-----------C
Q 005277          443 TTIRLWSTKLNANLV--CY---KGHNYPVWDVQFNPQGHYF-ASSSHDRTARIWSMDRIQPLRIMAGH-----------L  505 (704)
Q Consensus       443 g~I~lwd~~~~~~~~--~~---~~h~~~V~~v~~sp~~~~l-~sgs~dg~i~lwd~~~~~~~~~~~~~-----------~  505 (704)
                      |+|++||+.+++...  .+   .+|.+.+.+..|+|||+++ ++++.++++++||..+++++..+..+           .
T Consensus        83 g~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~  162 (432)
T d1qksa2          83 GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE  162 (432)
T ss_dssp             SEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC
T ss_pred             CCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC
Confidence            999999998876432  22   3466667777888999986 67888999999999999988877644           3


Q ss_pred             CCeeEEEEcCCCCEEEE-EECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCCCeee
Q 005277          506 SDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCV  582 (704)
Q Consensus       506 ~~V~~v~~~p~~~~l~t-gs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~~~~  582 (704)
                      .....+.++|++..+++ ...++.|.+||..+++...... .+...+.+++|+|+|+++++++ .++.+.++|..+++.+
T Consensus       163 ~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~  242 (432)
T d1qksa2         163 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  242 (432)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEE
Confidence            44567888998887654 5567999999998887655433 4556789999999999877766 4568999999988877


Q ss_pred             eee
Q 005277          583 TPL  585 (704)
Q Consensus       583 ~~~  585 (704)
                      ..+
T Consensus       243 ~~~  245 (432)
T d1qksa2         243 AIE  245 (432)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            665

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=7e-19  Score=178.30  Aligned_cols=254  Identities=13%  Similarity=0.097  Sum_probs=193.9

Q ss_pred             EEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEE-EEeCCCe
Q 005277          366 VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTT  444 (704)
Q Consensus       366 lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~Dg~  444 (704)
                      .++++.|+.|.|||+.+.                            +....+. ....+.+++|+|||++|+ +++.++.
T Consensus         5 yV~~~~~~~v~v~D~~t~----------------------------~~~~~i~-~g~~p~~va~spdG~~l~v~~~~~~~   55 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSN----------------------------KVTATIP-VGSNPMGAVISPDGTKVYVANAHSND   55 (301)
T ss_dssp             EEEETTTTEEEEEETTTT----------------------------EEEEEEE-CSSSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             EEEECCCCEEEEEECCCC----------------------------eEEEEEE-CCCCceEEEEeCCCCEEEEEECCCCE
Confidence            356778999999998762                            2222222 224578999999999875 6778999


Q ss_pred             EEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEE-EeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEE
Q 005277          445 IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG  523 (704)
Q Consensus       445 I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s-gs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tg  523 (704)
                      |++||+.+++.+..+..+. .+..+.|++++.++++ +..++.+.+|+..+++....+..+ ....++.|+|++..++++
T Consensus        56 i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~  133 (301)
T d1l0qa2          56 VSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVT  133 (301)
T ss_dssp             EEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEE
T ss_pred             EEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeee
Confidence            9999999999999888776 4678999999986554 557789999999998888877644 567889999999987654


Q ss_pred             -ECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC-CeEEEEeCCCCeeeeeecCCCceeeeeeeeeee
Q 005277          524 -SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLL  601 (704)
Q Consensus       524 -s~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d-g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~  601 (704)
                       ..++.+.+|+..++..+..+..+ ..+.+++++|++..+++++.+ +.+.+|+............+ .....+.+    
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----  207 (301)
T d1l0qa2         134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAV----  207 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEE----
T ss_pred             eccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeeccccc-CCcceeec----
Confidence             56788999999999988877644 567899999999988877655 67778888777776666544 34556666    


Q ss_pred             hccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe---CCCcEEEEeCCCCccccccccccCccccccccccCC
Q 005277          602 LVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS---ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT  678 (704)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs---~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~  678 (704)
                                                    ++++..+++++   .++.|++||..+++..               ..++.
T Consensus       208 ------------------------------~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~---------------~~~~~  242 (301)
T d1l0qa2         208 ------------------------------NPEGTKAYVTNVDKYFNTVSMIDTGTNKIT---------------ARIPV  242 (301)
T ss_dssp             ------------------------------CTTSSEEEEEEECSSCCEEEEEETTTTEEE---------------EEEEC
T ss_pred             ------------------------------cccccccccccccceeeeeeeeecCCCeEE---------------EEEcC
Confidence                                          88888876654   3468999999887542               23333


Q ss_pred             CCcCeEEEEEccCCcEE-EEeecCC
Q 005277          679 KSTPVYSLQFSRRNLLF-AAGALSK  702 (704)
Q Consensus       679 ~~~~V~~l~fs~~g~~L-a~gs~dg  702 (704)
                       ...+.+++|+|||++| ++++.++
T Consensus       243 -~~~~~~va~spdg~~l~va~~~~~  266 (301)
T d1l0qa2         243 -GPDPAGIAVTPDGKKVYVALSFCN  266 (301)
T ss_dssp             -CSSEEEEEECTTSSEEEEEETTTT
T ss_pred             -CCCEEEEEEeCCCCEEEEEECCCC
Confidence             3457899999999876 5666665

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=2.2e-19  Score=184.88  Aligned_cols=229  Identities=12%  Similarity=0.133  Sum_probs=179.9

Q ss_pred             CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec--cCCccCeEEEEEcCCCCEEE-EEe
Q 005277          364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY--QGHSGPVYSASFSPLGDFIL-SSS  440 (704)
Q Consensus       364 ~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~-s~s  440 (704)
                      .++++++.|+.|.|||+.+.                            .....+  ..+...+.+++|+|||++++ +++
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~----------------------------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~   53 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM----------------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVN   53 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT----------------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEET
T ss_pred             eEEEEEcCCCEEEEEECCCC----------------------------eEEEEEECCCCCCCccEEEECCCCCEEEEEEC
Confidence            47999999999999999862                            222222  23445678999999999875 667


Q ss_pred             CCCeEEEEeCCCCceeEEeecCC-----cCeeEEEEcCCCCEEEEEe------------CCCeEEEEECCCCceeEEecc
Q 005277          441 ADTTIRLWSTKLNANLVCYKGHN-----YPVWDVQFNPQGHYFASSS------------HDRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~-----~~V~~v~~sp~~~~l~sgs------------~dg~i~lwd~~~~~~~~~~~~  503 (704)
                      .++.|.+||+.+++.+..+..+.     ..+..++|+|+++++++++            .++.+.+||..++.....+..
T Consensus        54 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  133 (337)
T d1pbyb_          54 KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA  133 (337)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc
Confidence            89999999999999988877653     3456899999999998876            467899999999988888774


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe----------------------------------------
Q 005277          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF----------------------------------------  543 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~----------------------------------------  543 (704)
                       ...+.+++|+|+|+++++++.  .+.+||..+++....+                                        
T Consensus       134 -~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (337)
T d1pbyb_         134 -PRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID  210 (337)
T ss_dssp             -CSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred             -cCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccc
Confidence             466889999999999999864  4677887765544322                                        


Q ss_pred             --------------------------ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277          544 --------------------------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       544 --------------------------~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                                                ..+...+.++.++|++.+++++  ++.|++||+.+++.+..+. +...+.+++|
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~  287 (337)
T d1pbyb_         211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNV  287 (337)
T ss_dssp             TTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEE
T ss_pred             eeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEE
Confidence                                      1233345566777777777655  5789999999999988875 5566788888


Q ss_pred             eeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277          598 RFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK  660 (704)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~  660 (704)
                                                        +|+|++|++|+.||+|+|||..+.+.+..
T Consensus       288 ----------------------------------s~dG~~l~v~~~~~~i~v~D~~t~~~v~~  316 (337)
T d1pbyb_         288 ----------------------------------STDGSTVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             ----------------------------------CTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             ----------------------------------CCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence                                              99999999999999999999999876543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=9.4e-19  Score=180.76  Aligned_cols=241  Identities=12%  Similarity=0.064  Sum_probs=168.2

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc-CCccCeEEEEEcCCCCE
Q 005277          357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSGPVYSASFSPLGDF  435 (704)
Q Consensus       357 ~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~  435 (704)
                      ++|++++++|++++.++.|.|||+.+.                            +....+. .|...+.+++|+|||++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~----------------------------~~~~t~~~~~~~~p~~l~~spDG~~   53 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD----------------------------TVYKSCVMPDKFGPGTAMMAPDNRT   53 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT----------------------------EEEEEEECSSCCSSCEEEECTTSSE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC----------------------------CEEEEEEcCCCCCcceEEECCCCCE
Confidence            468999999999999999999999862                            2333332 45567789999999998


Q ss_pred             EE-EEeCCCeEEEEeCCCCceeEEeecCC------cCeeEEEEcCCCCEEEEEe------------CCCeEEEEECCCCc
Q 005277          436 IL-SSSADTTIRLWSTKLNANLVCYKGHN------YPVWDVQFNPQGHYFASSS------------HDRTARIWSMDRIQ  496 (704)
Q Consensus       436 l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~------~~V~~v~~sp~~~~l~sgs------------~dg~i~lwd~~~~~  496 (704)
                      ++ +++.++.|.+||+.+++.+..+....      ..+..++|+|+|+++++++            .++.+.+|+..+++
T Consensus        54 l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~  133 (346)
T d1jmxb_          54 AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL  133 (346)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             EEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccce
Confidence            75 56688999999999998887765332      3467899999999988775            46788999887655


Q ss_pred             eeEEecc--CCCCeeEEEEcCCCCEEEEE---------------------------------------------------
Q 005277          497 PLRIMAG--HLSDVDCVRWHINCNYIATG---------------------------------------------------  523 (704)
Q Consensus       497 ~~~~~~~--~~~~V~~v~~~p~~~~l~tg---------------------------------------------------  523 (704)
                      ....+..  ....+..+.+++++.+++++                                                   
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (346)
T d1jmxb_         134 EAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI  213 (346)
T ss_dssp             GBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred             eeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeee
Confidence            4322221  11233344444444333321                                                   


Q ss_pred             -------------ECCCcEEEEeCCCCcEEE-EeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCC
Q 005277          524 -------------SSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT  589 (704)
Q Consensus       524 -------------s~dg~I~iwd~~~~~~~~-~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~  589 (704)
                                   ..++.+.+||+.++.... ....|...+.++.+++++.+++++.. +.|.+||+.+++.+..+. +.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~  291 (346)
T d1jmxb_         214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LD  291 (346)
T ss_dssp             EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CS
T ss_pred             eeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CC
Confidence                         111223344444433222 22345556677777887777766554 578999998888887765 34


Q ss_pred             ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277          590 SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT  661 (704)
Q Consensus       590 ~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~  661 (704)
                      ..+.+++|                                  +|||++|++|+.||.|+|||+.+.+.+..+
T Consensus       292 ~~~~~va~----------------------------------s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i  329 (346)
T d1jmxb_         292 HTYYCVAF----------------------------------DKKGDKLYLGGTFNDLAVFNPDTLEKVKNI  329 (346)
T ss_dssp             SCCCEEEE----------------------------------CSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEE----------------------------------cCCCCEEEEEeCCCcEEEEECccCCEEEEE
Confidence            56778888                                  999999999999999999999998765443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=4.1e-18  Score=183.84  Aligned_cols=224  Identities=9%  Similarity=0.000  Sum_probs=156.3

Q ss_pred             cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (704)
Q Consensus       329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (704)
                      ...+.+|+...-.+.. ++ .....+..++|||||+++++++.||.|++||+.+.....                     
T Consensus        41 ~g~v~v~D~~t~~v~~-~~-~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~---------------------   97 (432)
T d1qksa2          41 AGQIALIDGSTYEIKT-VL-DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT---------------------   97 (432)
T ss_dssp             TTEEEEEETTTCCEEE-EE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE---------------------
T ss_pred             CCEEEEEECCCCcEEE-EE-eCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE---------------------
Confidence            3467788765544432 23 344579999999999999999999999999987632211                     


Q ss_pred             CCccceeeccCCccCeEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeecC-----------CcCeeEEEEcCCCC
Q 005277          409 GRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGH-----------NYPVWDVQFNPQGH  476 (704)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~Dg~I~lwd~~~~~~~~~~~~h-----------~~~V~~v~~sp~~~  476 (704)
                        ...+....+|.+.+.+..|+|||++| ++++.+++|++||..+++.+..+..|           ......+.++|+|.
T Consensus        98 --~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~  175 (432)
T d1qksa2          98 --VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP  175 (432)
T ss_dssp             --EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred             --EEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCC
Confidence              11223345677888888999999986 67888999999999999988877654           34456788999988


Q ss_pred             EE-EEEeCCCeEEEEECCCCceeEEec-cCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCcEEEEeec-----CCC
Q 005277          477 YF-ASSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFIG-----HRS  548 (704)
Q Consensus       477 ~l-~sgs~dg~i~lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~-----h~~  548 (704)
                      .+ ++...++.+.+|+..+.+...... .+...+.+++|+|+|+++++++. ++.+.++|..+++.+..+..     |..
T Consensus       176 ~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~  255 (432)
T d1qksa2         176 EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG  255 (432)
T ss_dssp             EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred             EEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccC
Confidence            76 455678999999998877554433 35567889999999998888775 55788999988877665431     222


Q ss_pred             CEEEEEEecCCCEEEEEe-CCCeEEEEeCC
Q 005277          549 MILSLAMSPDGRYMASGD-EDGTIMMWDLA  577 (704)
Q Consensus       549 ~i~~l~~spdg~~l~sg~-~dg~I~iwdl~  577 (704)
                      ......+...+...++.. .++.|.+|+..
T Consensus       256 ~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~  285 (432)
T d1qksa2         256 RGANFVHPTFGPVWATSHMGDDSVALIGTD  285 (432)
T ss_dssp             TCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             cccceecCCCCceecccccCCceEEecccc
Confidence            333333333333333332 25556666543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=2.1e-17  Score=169.70  Aligned_cols=249  Identities=14%  Similarity=0.040  Sum_probs=173.9

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeecC--CcCeeEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeEEeccCCC----
Q 005277          434 DFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQGHYF-ASSSHDRTARIWSMDRIQPLRIMAGHLS----  506 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~v~~sp~~~~l-~sgs~dg~i~lwd~~~~~~~~~~~~~~~----  506 (704)
                      +|+++++.|++|++||+.+++.+..+..+  ...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            57999999999999999999999888653  4567899999999987 4667899999999999999888765533    


Q ss_pred             -CeeEEEEcCCCCEEEEEE------------CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 005277          507 -DVDCVRWHINCNYIATGS------------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM  573 (704)
Q Consensus       507 -~V~~v~~~p~~~~l~tgs------------~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~i  573 (704)
                       .+..++|+|+++++++++            .+..+.+||..++.....+.. ...+.+++|+|+|+++++++.+  +.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~  158 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--cce
Confidence             356799999999998876            467899999999999888764 4568899999999999998754  788


Q ss_pred             EeCCCCeeeeeecCCCceee------eeeee------------eeehc-cc---------cccccccccccc----eeee
Q 005277          574 WDLASGRCVTPLMGHTSCVW------TLAYR------------FLLLV-TN---------AYLKISDKVSTG----FLFY  621 (704)
Q Consensus       574 wdl~~~~~~~~~~~h~~~V~------sl~~~------------~~~~~-~~---------~~~~~~~~~~~~----~~~~  621 (704)
                      ||..+++....+..+.....      ...+.            ..... ..         .....+......    ....
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             eeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence            99999988776644321100      00000            00000 00         000000000000    0001


Q ss_pred             eeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          622 SLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       622 ~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                      ..........++++.+++++  ++.|++||+.++..+               ..+ .+...+.+++|+|||.+|++|+.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~---------------~~~-~~~~~~~~~~~s~dG~~l~v~~~~  300 (337)
T d1pbyb_         239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASI---------------KRV-PLPHSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEE---------------EEE-ECSSCCCEEEECTTSCEEEEESBS
T ss_pred             CCcceEEEEecccceEEEEc--cccEEEEECCCCcEE---------------EEE-cCCCCEEEEEECCCCCEEEEEeCC
Confidence            11122333457888888766  589999999987643               222 234568899999999999999887


Q ss_pred             CC
Q 005277          702 KT  703 (704)
Q Consensus       702 gt  703 (704)
                      ++
T Consensus       301 ~~  302 (337)
T d1pbyb_         301 GD  302 (337)
T ss_dssp             SE
T ss_pred             Cc
Confidence            63

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.7e-16  Score=163.04  Aligned_cols=265  Identities=11%  Similarity=0.172  Sum_probs=179.8

Q ss_pred             EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEE-eCCC
Q 005277          365 LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADT  443 (704)
Q Consensus       365 ~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~Dg  443 (704)
                      .++++..|+.|+||+++..+.                          ........|.+.|.+|+|+|||++|+++ ..|+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~--------------------------l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~   59 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGA--------------------------LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEF   59 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC--------------------------EEEEEEEECSSCCCCEEECTTSSEEEEEETTTT
T ss_pred             EEEECCCCCcEEEEEEcCCCC--------------------------eEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCC
Confidence            457788999999999875211                          1122234577899999999999998655 4589


Q ss_pred             eEEEEeCCCCceeEEe---ecCCcCeeEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEE--eccCCCCeeEEEEcCCC
Q 005277          444 TIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRI--MAGHLSDVDCVRWHINC  517 (704)
Q Consensus       444 ~I~lwd~~~~~~~~~~---~~h~~~V~~v~~sp~~~~l~sgs~-dg~i~lwd~~~~~~~~~--~~~~~~~V~~v~~~p~~  517 (704)
                      .|++|++.........   ..+...+..++|+|+|+++++++. ++.+.+|+.........  ...+...+.++.++|++
T Consensus        60 ~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~  139 (333)
T d1ri6a_          60 RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN  139 (333)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS
T ss_pred             eEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc
Confidence            9999999876544333   234456778999999999998874 77899999877654433  33566778899999999


Q ss_pred             CEEEEEEC-CCcEEEEeCCCCcEEEE------eecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCCCee----eeee
Q 005277          518 NYIATGSS-DKTVRLWDVSSGECVRI------FIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRC----VTPL  585 (704)
Q Consensus       518 ~~l~tgs~-dg~I~iwd~~~~~~~~~------~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~~~----~~~~  585 (704)
                      +++++++. +..|.+|+.........      ..........++|++++.+++... ..+...+|+......    ....
T Consensus       140 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  219 (333)
T d1ri6a_         140 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL  219 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred             eeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeee
Confidence            99888774 45699999876533221      223445678999999998877654 556788888654321    1111


Q ss_pred             cC------CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE-EeCCCcEEEEeCCCCccc
Q 005277          586 MG------HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS-GSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       586 ~~------h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las-gs~Dg~V~iWd~~~~~~~  658 (704)
                      ..      .......+.+                                  ++++++++. +..++.+.+|++......
T Consensus       220 ~~~~~~~~~~~~~~~~~~----------------------------------s~d~~~~~~~~~~~~~~~~~~~~~~~~~  265 (333)
T d1ri6a_         220 DMMPENFSDTRWAADIHI----------------------------------TPDGRHLYACDRTASLITVFSVSEDGSV  265 (333)
T ss_dssp             ECSCTTCCSCCCEEEEEE----------------------------------CTTSSEEEEEETTTTEEEEEEECTTSCC
T ss_pred             eeeecCCCccccceeEEE----------------------------------ecccCceeeecccCCeEEEEEEcCCCCE
Confidence            10      1112222233                                  888886654 456789999998775433


Q ss_pred             cccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277          659 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  701 (704)
Q Consensus       659 ~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d  701 (704)
                      ..            +.........+.+++|+|||++|++++.+
T Consensus       266 ~~------------~~~~~~~~~~p~~~a~spDGk~l~va~~~  296 (333)
T d1ri6a_         266 LS------------KEGFQPTETQPRGFNVDHSGKYLIAAGQK  296 (333)
T ss_dssp             EE------------EEEEEECSSSCCCEEECTTSSEEEEECTT
T ss_pred             EE------------EEEEeCCCCCeeEEEEeCCCCEEEEEECC
Confidence            21            11122233456789999999988776644

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.72  E-value=2.3e-15  Score=157.56  Aligned_cols=242  Identities=11%  Similarity=0.018  Sum_probs=159.6

Q ss_pred             eeCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277          348 INTHNGLNCASISQDGSLVAGGF-----SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~lasg~-----~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (704)
                      ..+...+.+++++|||+.+++..     ..+.|.+||..+.                            +....+.++..
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg----------------------------~~~~~~~~~~~   68 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG----------------------------SILGHVNGGFL   68 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC----------------------------CEEEEEeCCCC
Confidence            35677899999999999987652     3456888886652                            23333444443


Q ss_pred             CeEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeecCCcCe-------eEEEEcCCCCEEEEEe--C
Q 005277          423 PVYSASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGHNYPV-------WDVQFNPQGHYFASSS--H  483 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s----------~Dg~I~lwd~~~~~~~~~~~~h~~~V-------~~v~~sp~~~~l~sgs--~  483 (704)
                      +  .++|+|||++|++++          .++.|.+||..+++.+..+..+....       ..+.|+++++.++...  .
T Consensus        69 ~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          69 P--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             c--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence            3  689999999998764          46789999999999887776655443       4467788877655543  4


Q ss_pred             CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCcEEEEeecCC---------------
Q 005277          484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHR---------------  547 (704)
Q Consensus       484 dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~---------------  547 (704)
                      ++.+.+|+....+....    .....++.++|+++.+ ++++.|+.+.+||..++........+.               
T Consensus       147 ~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (373)
T d2madh_         147 GPAVGLVVQGGSSDDQL----LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             CCceEEeeccCCeEEEE----eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC
Confidence            56778888776554433    2345677788887654 566778888888876654433221100               


Q ss_pred             --------------------------------------------CCEEEEEEecCCCEEE----------EEeCCCeEEE
Q 005277          548 --------------------------------------------SMILSLAMSPDGRYMA----------SGDEDGTIMM  573 (704)
Q Consensus       548 --------------------------------------------~~i~~l~~spdg~~l~----------sg~~dg~I~i  573 (704)
                                                                  .....++++|++..++          +...++.+.+
T Consensus       223 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~  302 (373)
T d2madh_         223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             CCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence                                                        0112234444444332          3344556677


Q ss_pred             EeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC--EEEEEeCCCcEEEEe
Q 005277          574 WDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS--LLASGSADCTVKLWD  651 (704)
Q Consensus       574 wdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~lasgs~Dg~V~iWd  651 (704)
                      ||..+++.+..+. +...+..+.|                                  +|||+  ++++++.|++|+|||
T Consensus       303 ~d~~t~~~~~~~~-~~~~~~~~a~----------------------------------spDG~~~l~vt~~~d~~v~v~D  347 (373)
T d2madh_         303 VTGLVGQTSSQIS-LGHDVDAISV----------------------------------AQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             EECCCCcEEEEec-CCCCeeEEEE----------------------------------CCCCCEEEEEEeCCCCeEEEEE
Confidence            7777776666554 4445566666                                  99998  457889999999999


Q ss_pred             CCCCccc
Q 005277          652 VTTSTKV  658 (704)
Q Consensus       652 ~~~~~~~  658 (704)
                      +.+++.+
T Consensus       348 ~~tg~~~  354 (373)
T d2madh_         348 AGAGDQD  354 (373)
T ss_pred             CCCCCEE
Confidence            9998653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=2.7e-15  Score=153.86  Aligned_cols=267  Identities=10%  Similarity=0.163  Sum_probs=184.3

Q ss_pred             cCeEeecCCCCC-CeEEEEEeeCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277          329 RNRVHLSSAALP-SVSFYTFINTHNGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (704)
Q Consensus       329 ~~~~~l~~~~~p-~~~~~~~~~~~~~V~~~~fs~dg~~lasg-~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (704)
                      ...+++|..... ........+|.+.+.+++|||||++|+++ ..|+.|++|++.......                   
T Consensus        13 ~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~-------------------   73 (333)
T d1ri6a_          13 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-------------------   73 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-------------------
T ss_pred             CCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcE-------------------
Confidence            356788875433 34566667899999999999999988555 458999999987522111                   


Q ss_pred             CCCCccceeeccCCccCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEe-
Q 005277          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSS-  482 (704)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-Dg~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs-  482 (704)
                            .......+...+.+++|+|||++|++++. +++|.+|+.........  ...+...+.++.++|+++++++++ 
T Consensus        74 ------~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~  147 (333)
T d1ri6a_          74 ------TFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL  147 (333)
T ss_dssp             ------EEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG
T ss_pred             ------EEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccc
Confidence                  11111223445678999999999998874 77899999876654333  345667788999999999988877 


Q ss_pred             CCCeEEEEECCCCceeEE------eccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCc----EEEEee------c
Q 005277          483 HDRTARIWSMDRIQPLRI------MAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGE----CVRIFI------G  545 (704)
Q Consensus       483 ~dg~i~lwd~~~~~~~~~------~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~----~~~~~~------~  545 (704)
                      .+..+.+|+.........      ..........++|++++.+++... ..+...+|+.....    ......      .
T Consensus       148 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  227 (333)
T d1ri6a_         148 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS  227 (333)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred             ccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCC
Confidence            456799999876543321      123445678899999998887665 55677888765322    111111      1


Q ss_pred             CCCCEEEEEEecCCCEEEEE-eCCCeEEEEeCCCCeeeeeec---CCCceeeeeeeeeeehccccccccccccccceeee
Q 005277          546 HRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGRCVTPLM---GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFY  621 (704)
Q Consensus       546 h~~~i~~l~~spdg~~l~sg-~~dg~I~iwdl~~~~~~~~~~---~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (704)
                      .......+++++++++++.+ ..++.+.+|++..........   .+...+.+++|                        
T Consensus       228 ~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~------------------------  283 (333)
T d1ri6a_         228 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNV------------------------  283 (333)
T ss_dssp             SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEE------------------------
T ss_pred             ccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEE------------------------
Confidence            23457788999999876654 567899999987654333322   23445667788                        


Q ss_pred             eeeEEeecccCCCCCEEEEEe-CCCcEEEEeCCC
Q 005277          622 SLTIIYFGCASCEGSLLASGS-ADCTVKLWDVTT  654 (704)
Q Consensus       622 ~~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~~  654 (704)
                                +|+|++|++++ .++.|++|++..
T Consensus       284 ----------spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         284 ----------DHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             ----------CTTSSEEEEECTTTCEEEEEEEET
T ss_pred             ----------eCCCCEEEEEECCCCeEEEEEEEC
Confidence                      99999877665 568999996643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.70  E-value=1.4e-16  Score=164.05  Aligned_cols=256  Identities=8%  Similarity=0.018  Sum_probs=171.5

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeEEeccC
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYF-ASSSHDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l-~sgs~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      ++|++++++|++++.|++|.+||+.+++.+.+++ .|...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            5789999999999999999999999999998887 456678899999999987 45567899999999999888776533


Q ss_pred             C------CCeeEEEEcCCCCEEEEEE------------CCCcEEEEeCCCCcEEEEeec--CCCCEEEEEEecCCCEEEE
Q 005277          505 L------SDVDCVRWHINCNYIATGS------------SDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMAS  564 (704)
Q Consensus       505 ~------~~V~~v~~~p~~~~l~tgs------------~dg~I~iwd~~~~~~~~~~~~--h~~~i~~l~~spdg~~l~s  564 (704)
                      .      ..+..++|+|+|+++++++            .++.+.+||..+++....+..  ....+..+.+++++..+++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            2      2356899999999998765            477899999988765443322  2345666778888876654


Q ss_pred             EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeee----eehc---------------------------cccccccccc
Q 005277          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRF----LLLV---------------------------TNAYLKISDK  613 (704)
Q Consensus       565 g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~----~~~~---------------------------~~~~~~~~~~  613 (704)
                      +   +.+.+||+.+++.+..+..+... ..+.+..    ....                           .......++.
T Consensus       162 ~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
T d1jmxb_         162 G---PDIYKMDVKTGKYTVALPLRNWN-RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  237 (346)
T ss_dssp             S---SSEEEECTTTCCEEEEECSTTCC-CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             C---CcceEEEccCCCEEEEEecCCCc-cceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence            3   46899999998888776544221 1111100    0000                           0000000111


Q ss_pred             cccceee----eeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEc
Q 005277          614 VSTGFLF----YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS  689 (704)
Q Consensus       614 ~~~~~~~----~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs  689 (704)
                      .......    .....+.....++++..++.+.. +.|.+||..+++..               ..+. ....+.+++|+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~---------------~~~~-~~~~~~~va~s  300 (346)
T d1jmxb_         238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLI---------------KAAN-LDHTYYCVAFD  300 (346)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEE---------------EEEE-CSSCCCEEEEC
T ss_pred             CCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEE---------------EEEc-CCCCEEEEEEc
Confidence            0000000    00112223344677777776654 58999999887542               2222 23468899999


Q ss_pred             cCCcEEEEeecCCC
Q 005277          690 RRNLLFAAGALSKT  703 (704)
Q Consensus       690 ~~g~~La~gs~dgt  703 (704)
                      |||++|++|+.+++
T Consensus       301 ~DG~~l~v~~~d~~  314 (346)
T d1jmxb_         301 KKGDKLYLGGTFND  314 (346)
T ss_dssp             SSSSCEEEESBSSE
T ss_pred             CCCCEEEEEeCCCc
Confidence            99999999998863

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=1e-15  Score=158.97  Aligned_cols=237  Identities=11%  Similarity=0.056  Sum_probs=167.4

Q ss_pred             EEEcCCCCEEEEEe-----CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277          357 ASISQDGSLVAGGF-----SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (704)
Q Consensus       357 ~~fs~dg~~lasg~-----~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (704)
                      .+.+|||+.+++..     .++.|.+||..+.                            +....+..+  .+..++|+|
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg----------------------------~~~~~~~~g--~~~~~a~Sp   56 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG----------------------------RVIGMIDGG--FLPNPVVAD   56 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT----------------------------EEEEEEEEC--SSCEEEECT
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCC----------------------------cEEEEEECC--CCCceEEcC
Confidence            35689999887753     3567999998752                            222333333  334799999


Q ss_pred             CCCEEEEE----------eCCCeEEEEeCCCCceeEEeecCCc-------CeeEEEEcCCCCEEEEEe--CCCeEEEEEC
Q 005277          432 LGDFILSS----------SADTTIRLWSTKLNANLVCYKGHNY-------PVWDVQFNPQGHYFASSS--HDRTARIWSM  492 (704)
Q Consensus       432 ~~~~l~s~----------s~Dg~I~lwd~~~~~~~~~~~~h~~-------~V~~v~~sp~~~~l~sgs--~dg~i~lwd~  492 (704)
                      ||++|+++          +.|+.|++||+.+++.+..+..+..       ....+.|+|+++++++++  .+..+.+|+.
T Consensus        57 Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~  136 (355)
T d2bbkh_          57 DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL  136 (355)
T ss_dssp             TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred             CCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeec
Confidence            99988754          3478999999999998877654332       245689999999887775  5678999999


Q ss_pred             CCCceeEEeccCC---------------------------------------------CCeeEEEEcCCCCEEEEEECCC
Q 005277          493 DRIQPLRIMAGHL---------------------------------------------SDVDCVRWHINCNYIATGSSDK  527 (704)
Q Consensus       493 ~~~~~~~~~~~~~---------------------------------------------~~V~~v~~~p~~~~l~tgs~dg  527 (704)
                      .+++.+..+..+.                                             ..+.+..+.+++..++.++.++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (355)
T d2bbkh_         137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTG  216 (355)
T ss_dssp             TTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTS
T ss_pred             CCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCC
Confidence            8776554432111                                             1122345556667778888899


Q ss_pred             cEEEEeCCCCcEEEE--eecCC----------CCEEEEEEecCCCEEEEEeCC----------CeEEEEeCCCCeeeeee
Q 005277          528 TVRLWDVSSGECVRI--FIGHR----------SMILSLAMSPDGRYMASGDED----------GTIMMWDLASGRCVTPL  585 (704)
Q Consensus       528 ~I~iwd~~~~~~~~~--~~~h~----------~~i~~l~~spdg~~l~sg~~d----------g~I~iwdl~~~~~~~~~  585 (704)
                      .+++|++..+.....  ...+.          .....++++|++..++....+          ..|.+||..+++.+..+
T Consensus       217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~  296 (355)
T d2bbkh_         217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF  296 (355)
T ss_dssp             EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred             eEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe
Confidence            999999987754321  11111          123458899999988776543          37999999999988877


Q ss_pred             cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC--EEEEEeCCCcEEEEeCCCCccc
Q 005277          586 MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS--LLASGSADCTVKLWDVTTSTKV  658 (704)
Q Consensus       586 ~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~lasgs~Dg~V~iWd~~~~~~~  658 (704)
                      . +...+.++.|                                  +|||+  ++++++.|+.|+|||+.+++.+
T Consensus       297 ~-~~~~~~~~a~----------------------------------spDG~~~l~v~~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         297 E-MGHEIDSINV----------------------------------SQDEKPLLYALSTGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             E-EEEEECEEEE----------------------------------CCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             c-CCCCEEEEEE----------------------------------cCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence            5 3455778888                                  99997  4577788999999999998654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.62  E-value=7.5e-14  Score=145.78  Aligned_cols=162  Identities=14%  Similarity=0.011  Sum_probs=128.1

Q ss_pred             cCCccCeEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe----------
Q 005277          418 QGHSGPVYSASFSPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----------  482 (704)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~l~s~-----s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs----------  482 (704)
                      ..+.+++.+++++||++.++..     +..+.|.+||..+++.+..+..+..+  .++|+|||+++++++          
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            4688899999999999988754     34467999999999999988876554  799999999999875          


Q ss_pred             CCCeEEEEECCCCceeEEeccCCCCe-------eEEEEcCCCCEEEEEE--CCCcEEEEeCCCCcEEEEeecCCCCEEEE
Q 005277          483 HDRTARIWSMDRIQPLRIMAGHLSDV-------DCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSL  553 (704)
Q Consensus       483 ~dg~i~lwd~~~~~~~~~~~~~~~~V-------~~v~~~p~~~~l~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~i~~l  553 (704)
                      .++.|.+||..+++.+..+..+....       ..+.|+|+++.+++..  .++.+.+|+..+++.....    ....++
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  170 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCY  170 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeE
Confidence            45789999999999888776655443       4578888888776554  4568899998877655433    446788


Q ss_pred             EEecCCCEE-EEEeCCCeEEEEeCCCCeeeeee
Q 005277          554 AMSPDGRYM-ASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       554 ~~spdg~~l-~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                      .++|+|+.+ ++++.||.+.+||...+......
T Consensus       171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~  203 (373)
T d2madh_         171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGL  203 (373)
T ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEE
Confidence            999998755 67889999999999887766544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=1.7e-13  Score=141.66  Aligned_cols=241  Identities=14%  Similarity=0.066  Sum_probs=155.7

Q ss_pred             CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEE----------eCCCcEEEEEcccCCccccccccCCCCCCC
Q 005277          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGG----------FSDSSLKVWDMAKLGQQAVSSGLQGENDTT  399 (704)
Q Consensus       330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg----------~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~  399 (704)
                      ..+++++........ ++..+  .+..++|||||++|++.          ..|+.|++||+.+.............    
T Consensus        28 ~~v~v~D~~tg~~~~-~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~----  100 (355)
T d2bbkh_          28 TQQFVIDGEAGRVIG-MIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP----  100 (355)
T ss_dssp             EEEEEEETTTTEEEE-EEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC----
T ss_pred             CeEEEEECCCCcEEE-EEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcc----
Confidence            456666654443322 33333  33478999999988764          34789999998874332211110000    


Q ss_pred             CcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEeec----------------
Q 005277          400 PREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS--ADTTIRLWSTKLNANLVCYKG----------------  461 (704)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s--~Dg~I~lwd~~~~~~~~~~~~----------------  461 (704)
                                       ..........++|+|++++++.++  .+..+.+|+..+++.+..+..                
T Consensus       101 -----------------~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d2bbkh_         101 -----------------RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  163 (355)
T ss_dssp             -----------------CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             -----------------eeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEE
Confidence                             001112234567888888766553  456777888776655433321                


Q ss_pred             -----------------------------CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE--eccC------
Q 005277          462 -----------------------------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI--MAGH------  504 (704)
Q Consensus       462 -----------------------------h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~--~~~~------  504 (704)
                                                   +...+....+.+++..++.++.++.+.+|++..+.....  ...+      
T Consensus       164 ~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  243 (355)
T d2bbkh_         164 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  243 (355)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             EcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEe
Confidence                                         112233445666777788888999999999987653221  1111      


Q ss_pred             ----CCCeeEEEEcCCCCEEEEEECC----------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCC--EEEEEeCC
Q 005277          505 ----LSDVDCVRWHINCNYIATGSSD----------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR--YMASGDED  568 (704)
Q Consensus       505 ----~~~V~~v~~~p~~~~l~tgs~d----------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~--~l~sg~~d  568 (704)
                          ......++++|++..++....+          ..|.+||..+++.+..+. +...+.+++|+|||+  ++++++.|
T Consensus       244 ~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d  322 (355)
T d2bbkh_         244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGD  322 (355)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTT
T ss_pred             eeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCC
Confidence                1233568899999988876544          369999999999888775 345688999999998  45677889


Q ss_pred             CeEEEEeCCCCeeeeeecCCCceeeee
Q 005277          569 GTIMMWDLASGRCVTPLMGHTSCVWTL  595 (704)
Q Consensus       569 g~I~iwdl~~~~~~~~~~~h~~~V~sl  595 (704)
                      +.|.+||+.+++.+.++.++...-..+
T Consensus       323 ~~i~v~D~~tg~~~~~i~~~G~~p~~i  349 (355)
T d2bbkh_         323 KTLYIHDAESGEELRSVNQLGHGPQVI  349 (355)
T ss_dssp             TEEEEEETTTCCEEEEECCCCSSCCEE
T ss_pred             CEEEEEECCCCCEEEEEeCcCCCccEE
Confidence            999999999999999997665433333

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.48  E-value=1.4e-12  Score=141.28  Aligned_cols=145  Identities=14%  Similarity=0.194  Sum_probs=110.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCE
Q 005277          356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF  435 (704)
Q Consensus       356 ~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~  435 (704)
                      .+.|.+|+.++..  .++.|.+||+.+.......                       ....+..|...|.++.||||+++
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~-----------------------~~~~~~~~~~~i~~~~~SpDg~~   75 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFL-----------------------ENSTFDEFGHSINDYSISPDGQF   75 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEE-----------------------CTTTTTTSSSCCCEEEECTTSSE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEE-----------------------chhhhhhccCccceeEECCCCCE
Confidence            4678999987764  5788999999874332211                       01234567788999999999999


Q ss_pred             EEEEeC---------CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC--
Q 005277          436 ILSSSA---------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH--  504 (704)
Q Consensus       436 l~s~s~---------Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~--  504 (704)
                      |+.++.         ++.+.+||+.+++ +..+..|...+..+.|||+|+++|.. .++.+.+|+..++...+....+  
T Consensus        76 i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~  153 (470)
T d2bgra1          76 ILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKE  153 (470)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBT
T ss_pred             EEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCC
Confidence            997753         5778999999776 45577888899999999999999986 5688999999988766554322  


Q ss_pred             ----------------CCCeeEEEEcCCCCEEEEEECCC
Q 005277          505 ----------------LSDVDCVRWHINCNYIATGSSDK  527 (704)
Q Consensus       505 ----------------~~~V~~v~~~p~~~~l~tgs~dg  527 (704)
                                      .+....+.|+|+|++|++...|.
T Consensus       154 ~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             CcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence                            23346688999999999987553

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.48  E-value=2.1e-13  Score=143.80  Aligned_cols=306  Identities=10%  Similarity=0.058  Sum_probs=185.7

Q ss_pred             EEEEeCCCcEEEEEcccCCccccccccCCCCC--CCCcc---cccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEE-
Q 005277          366 VAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND--TTPRE---DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-  439 (704)
Q Consensus       366 lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-  439 (704)
                      +++|+.+|.|+||++.++..............  .....   .+..   ..........|........++|||++|+.. 
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~---~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d   90 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILG---GDQQYLNGDCHHPHISMTDGRYDGKYLFIND   90 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHC---SSSCCSCCCBCCCEEEEETTEEEEEEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEe---cccccccCcccCCCcceecccCCCCEEEEEc
Confidence            67788899999999987654333221111000  00000   0000   001111123355556667778999998655 


Q ss_pred             eCCCeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCCC--EEEEEeCCC-----------------eEEEEECCCCceeE
Q 005277          440 SADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGH--YFASSSHDR-----------------TARIWSMDRIQPLR  499 (704)
Q Consensus       440 s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~--~l~sgs~dg-----------------~i~lwd~~~~~~~~  499 (704)
                      ..+++|.+||+.+++....+. .+...+..++|+|+|+  |++..+.+.                 .+..+|..+.+...
T Consensus        91 ~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~  170 (441)
T d1qnia2          91 KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW  170 (441)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred             CCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence            578899999999998877665 4567899999999998  555444332                 23557888877766


Q ss_pred             EeccCCCCeeEEEEcCCCCEEEEEECC-----------------------------------------CcEEEEeCCCCc
Q 005277          500 IMAGHLSDVDCVRWHINCNYIATGSSD-----------------------------------------KTVRLWDVSSGE  538 (704)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~d-----------------------------------------g~I~iwd~~~~~  538 (704)
                      .+... .....+.|+|+|+++++++.+                                         +.+.+++.....
T Consensus       171 qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~  249 (441)
T d1qnia2         171 QVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE  249 (441)
T ss_dssp             EEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred             EEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence            66533 457889999999999988744                                         344555555555


Q ss_pred             EEEEeecCCCCEEEEEEecCCCEEE-EEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccc
Q 005277          539 CVRIFIGHRSMILSLAMSPDGRYMA-SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTG  617 (704)
Q Consensus       539 ~~~~~~~h~~~i~~l~~spdg~~l~-sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~  617 (704)
                      .++.+...+. ...+.++|||++++ ++..+++|.+||+.+..  ..+.++-....++....               .. 
T Consensus       250 v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~--~~~~~~~~~~~~~~~~~---------------~~-  310 (441)
T d1qnia2         250 FTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD--DLFEDKIELRDTIVAEP---------------EL-  310 (441)
T ss_dssp             SEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHH--HHTTTSSCGGGGEEECC---------------BC-
T ss_pred             eEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhh--hHhhccCCcceEEEeec---------------cc-
Confidence            5666655444 57899999999875 56789999999987532  22222222222221100               00 


Q ss_pred             eeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEE
Q 005277          618 FLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA  697 (704)
Q Consensus       618 ~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~  697 (704)
                           ...+....++++|..+.+.+.|..|..|++....................+...++|...+.+..|+|||++|++
T Consensus       311 -----glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s  385 (441)
T d1qnia2         311 -----GLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVV  385 (441)
T ss_dssp             -----CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEE
T ss_pred             -----ccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEe
Confidence                 000111123888988899999999999998532111000000000000112233677778888899999999999


Q ss_pred             ee
Q 005277          698 GA  699 (704)
Q Consensus       698 gs  699 (704)
                      ++
T Consensus       386 ~~  387 (441)
T d1qnia2         386 LS  387 (441)
T ss_dssp             EE
T ss_pred             cC
Confidence            94

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.42  E-value=2.6e-12  Score=134.22  Aligned_cols=266  Identities=8%  Similarity=-0.062  Sum_probs=169.2

Q ss_pred             eEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEEcccCCccccccccCCCCCCCC
Q 005277          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTP  400 (704)
Q Consensus       331 ~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~----------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~  400 (704)
                      ++++++...+...- +...+...  .++|+|||+.|++.+          .|+.|.+||..+.............     
T Consensus        47 ~~~~~d~~~~~~~~-~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~-----  118 (368)
T d1mdah_          47 ENWVSCAGCGVTLG-HSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP-----  118 (368)
T ss_dssp             EEEEEETTTTEEEE-EEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC-----
T ss_pred             eEEEEeCCCCcEEE-EEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccc-----
Confidence            34444544443322 22333333  589999999998754          3678999998764322211100000     


Q ss_pred             cccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEE
Q 005277          401 REDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS-ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA  479 (704)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  479 (704)
                                  .    .........++|+|||++|+++. .++++.+||+.+++.+..+..+.....   +......++
T Consensus       119 ------------~----~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v  179 (368)
T d1mdah_         119 ------------R----FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHY  179 (368)
T ss_dssp             ------------S----CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEE
T ss_pred             ------------e----ecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEE
Confidence                        0    00111223589999999998775 579999999999998888776654321   112345677


Q ss_pred             EEeCCCeEEEEECCCCceeEE------eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cC-----
Q 005277          480 SSSHDRTARIWSMDRIQPLRI------MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GH-----  546 (704)
Q Consensus       480 sgs~dg~i~lwd~~~~~~~~~------~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h-----  546 (704)
                      ..+.||.+.+|++........      +..+...+..+.+.+++..+.+.  .+.+++++...+.......  .+     
T Consensus       180 ~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~  257 (368)
T d1mdah_         180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRK  257 (368)
T ss_dssp             CCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHH
T ss_pred             EEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceee
Confidence            778888888888765433222      12344455667788887666543  5667777776554443221  11     


Q ss_pred             -----CCCEEEEEEecCCCEEEEEeCC---------CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcccccccccc
Q 005277          547 -----RSMILSLAMSPDGRYMASGDED---------GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISD  612 (704)
Q Consensus       547 -----~~~i~~l~~spdg~~l~sg~~d---------g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~  612 (704)
                           ......++++|++..++....+         ..|.+||..+++.+..+. +...+.++.|               
T Consensus       258 ~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~---------------  321 (368)
T d1mdah_         258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIA---------------  321 (368)
T ss_dssp             HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEE---------------
T ss_pred             eeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEE---------------
Confidence                 1123457899998877665322         359999999999888775 3456778888               


Q ss_pred             ccccceeeeeeeEEeecccCCCCC--EEEEEeCCCcEEEEeCCCCccccc
Q 005277          613 KVSTGFLFYSLTIIYFGCASCEGS--LLASGSADCTVKLWDVTTSTKVLK  660 (704)
Q Consensus       613 ~~~~~~~~~~~~~~~~~~~s~~g~--~lasgs~Dg~V~iWd~~~~~~~~~  660 (704)
                                         +|||+  ++++++.|+.|+|||..+++.+..
T Consensus       322 -------------------spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~  352 (368)
T d1mdah_         322 -------------------AQDGASDNYANSAGTEVLDIYDAASDQDQSS  352 (368)
T ss_dssp             -------------------CCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred             -------------------CCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence                               99996  356777899999999999876543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.33  E-value=4.8e-12  Score=132.13  Aligned_cols=232  Identities=8%  Similarity=-0.060  Sum_probs=144.5

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeecCCc-------CeeEEEEcCCCCEEEEEe-CCCeE
Q 005277          426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGHNY-------PVWDVQFNPQGHYFASSS-HDRTA  487 (704)
Q Consensus       426 ~l~~sp~~~~l~s~s----------~Dg~I~lwd~~~~~~~~~~~~h~~-------~V~~v~~sp~~~~l~sgs-~dg~i  487 (704)
                      .++|+|||++|++++          .|++|++||..+++.+..+..+..       ....++|+|||++++++. .++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            589999999888654          478899999999998887764432       234699999999998876 57999


Q ss_pred             EEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE------eecCCCCEEEEEEecCCCE
Q 005277          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI------FIGHRSMILSLAMSPDGRY  561 (704)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~------~~~h~~~i~~l~~spdg~~  561 (704)
                      .+||+.+.+.+..+..+.....   +......++..+.||.+.+|++........      +..+...+....+.+++..
T Consensus       149 ~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  225 (368)
T d1mdah_         149 AGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             EEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEE
Confidence            9999999998888765543321   122345666677888888888765433221      2234445566788888876


Q ss_pred             EEEEeCCCeEEEEeCCCCeeeee--ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEE
Q 005277          562 MASGDEDGTIMMWDLASGRCVTP--LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA  639 (704)
Q Consensus       562 l~sg~~dg~I~iwdl~~~~~~~~--~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~la  639 (704)
                      +.+.  .+.+.++++..+.....  ...+........|...                +        .....+++++..++
T Consensus       226 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------g--------~~~~a~~~~~~~~~  279 (368)
T d1mdah_         226 VWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSA----------------G--------FQMVAKLKNTDGIM  279 (368)
T ss_dssp             EECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC----------------S--------SSCEEEETTTTEEE
T ss_pred             EEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCC----------------C--------ceeEEEcCCCCEEE
Confidence            6554  45567777665543321  1111111111111000                0        00001167777665


Q ss_pred             EEeCC---------CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCc--EEEEeecCC
Q 005277          640 SGSAD---------CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL--LFAAGALSK  702 (704)
Q Consensus       640 sgs~D---------g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~--~La~gs~dg  702 (704)
                      ....+         ..|.+||..+++.+               ..+. ....+.++.|+|||+  +++++..++
T Consensus       280 v~~~~~~~~~~~~~~~v~v~D~~t~~~~---------------~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~  337 (368)
T d1mdah_         280 ILTVEHSRSCLAAAENTSSVTASVGQTS---------------GPIS-NGHDSDAIIAAQDGASDNYANSAGTE  337 (368)
T ss_dssp             EEEEECSSCTTSCEEEEEEEESSSCCEE---------------ECCE-EEEEECEEEECCSSSCEEEEEETTTT
T ss_pred             EEecCCCceeecCCceEEEEECCCCcEe---------------EEec-CCCceeEEEECCCCCEEEEEEeCCCC
Confidence            54322         35899999887643               2222 235688999999996  345555554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.28  E-value=8.3e-11  Score=123.62  Aligned_cols=200  Identities=8%  Similarity=0.026  Sum_probs=138.5

Q ss_pred             eCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277          349 NTHNGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg-~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (704)
                      .|+-.+.+..++|||++|.+. ..++.|.+||+.++....                           ..-..+...+.++
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~---------------------------ii~iP~g~gphgi  121 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDK---------------------------ITHIPNVQAIHGL  121 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEE---------------------------EEECTTCCCEEEE
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEee---------------------------EEecCCCCCccce
Confidence            455566777788999988655 568899999998632211                           1123455678999


Q ss_pred             EEcCCCC--EEEEEeCCC-----------------eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC----
Q 005277          428 SFSPLGD--FILSSSADT-----------------TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----  484 (704)
Q Consensus       428 ~~sp~~~--~l~s~s~Dg-----------------~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d----  484 (704)
                      +|+|+++  |++..+.+.                 .+..+|..+......+... .....+.|+|+|+++++.+.+    
T Consensus       122 ~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~  200 (441)
T d1qnia2         122 RLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERA  200 (441)
T ss_dssp             EECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCC
T ss_pred             EEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCce
Confidence            9999998  555554442                 2355788888777666643 356789999999998877643    


Q ss_pred             -------------------------------------CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEE-EECC
Q 005277          485 -------------------------------------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT-GSSD  526 (704)
Q Consensus       485 -------------------------------------g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t-gs~d  526 (704)
                                                           +.+.+++......++.+....+ ...+.++|+|+++++ |..+
T Consensus       201 ~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~  279 (441)
T d1qnia2         201 VDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLS  279 (441)
T ss_dssp             SSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTS
T ss_pred             EEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcC
Confidence                                                 3445555555555666655433 578999999998865 5679


Q ss_pred             CcEEEEeCCCCc-----------EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277          527 KTVRLWDVSSGE-----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       527 g~I~iwd~~~~~-----------~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~  577 (704)
                      ++|.+||+.+..           ++.-.....-.....+|+++|+.+.+.+.|..|..|++.
T Consensus       280 ~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         280 PTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             SBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             CcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            999999986421           121111222234567899999999999999999999974

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.23  E-value=1.9e-10  Score=123.96  Aligned_cols=106  Identities=15%  Similarity=0.168  Sum_probs=81.4

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC
Q 005277          349 NTHNGLNCASISQDGSLVAGGFS---------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~---------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (704)
                      .|...|.++.|||||++||.++.         ++.+.|||+.+.                             ....+..
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~-----------------------------~~~~l~~  109 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-----------------------------QLITEER  109 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-----------------------------EECCSSC
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC-----------------------------ccccccc
Confidence            44567999999999999998854         567889998752                             2344667


Q ss_pred             CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec------------------CCcCeeEEEEcCCCCEEEEE
Q 005277          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG------------------HNYPVWDVQFNPQGHYFASS  481 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~------------------h~~~V~~v~~sp~~~~l~sg  481 (704)
                      |...+..+.|||||+.++... ++.+.+|+..++........                  ..+....+.|+|||++++..
T Consensus       110 ~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~  188 (470)
T d2bgra1         110 IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (470)
T ss_dssp             CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             CCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCcccee
Confidence            888999999999999999865 67899999998876544322                  12334568899999999987


Q ss_pred             eCC
Q 005277          482 SHD  484 (704)
Q Consensus       482 s~d  484 (704)
                      ..|
T Consensus       189 ~~d  191 (470)
T d2bgra1         189 QFN  191 (470)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.15  E-value=6.5e-09  Score=102.43  Aligned_cols=240  Identities=10%  Similarity=0.058  Sum_probs=156.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEE-eCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          350 THNGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg-~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      +..+-..++++++|++.++. ...+.|..++......                           ......+. ....+++
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~---------------------------~~~~~~~~-~~p~gva   63 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT---------------------------TVLPFNGL-YQPQGLA   63 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CE---------------------------EECCCCSC-CSCCCEE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE---------------------------EEeccCCc-cCceEEE
Confidence            33456899999999976654 4557777776543111                           11111111 2346788


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCe
Q 005277          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV  508 (704)
Q Consensus       429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V  508 (704)
                      +++++..+++....+.+++++-.+...+....+ .....++++.++++++++-..+..+..++.................
T Consensus        64 v~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  142 (260)
T d1rwia_          64 VDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDP  142 (260)
T ss_dssp             ECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSC
T ss_pred             EcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeeeeeecccCCc
Confidence            999999877777777777776555544433332 3456899999999988877777778888776544333222334556


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC
Q 005277          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH  588 (704)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h  588 (704)
                      .++++.|+++++++...++.|..+|.............-.....+++.++|+++++....+.|..++.............
T Consensus       143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~  222 (260)
T d1rwia_         143 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG  222 (260)
T ss_dssp             CEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCS
T ss_pred             ceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCC
Confidence            78999999998888888889999998765444333345566789999999998888888888888886544221111111


Q ss_pred             CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277          589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV  652 (704)
Q Consensus       589 ~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~  652 (704)
                      -.....|++                                  +++|+++++-..+++|+..+.
T Consensus       223 ~~~P~~i~~----------------------------------d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         223 LNTPLAVAV----------------------------------DSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CCCEEEEEE----------------------------------CTTCCEEEEEGGGTEEEEECC
T ss_pred             CCCeEEEEE----------------------------------eCCCCEEEEECCCCEEEEEeC
Confidence            123445655                                  888888887676776665443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.03  E-value=7e-08  Score=97.06  Aligned_cols=229  Identities=11%  Similarity=0.009  Sum_probs=155.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eEEe
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRIM  501 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~-~~~~  501 (704)
                      .+..++++|||+++++...+++|..|+....  ...+......+.+++|+++|+++++...++.+..|+...... ...+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            5789999999999999999999988886633  334445667899999999999999988888888887754322 1111


Q ss_pred             --ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec----------CCCCEEEEEEecCCCEEEEEeCCC
Q 005277          502 --AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG----------HRSMILSLAMSPDGRYMASGDEDG  569 (704)
Q Consensus       502 --~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~----------h~~~i~~l~~spdg~~l~sg~~dg  569 (704)
                        .........+++.++++++++.+.++.+..+|...+........          .......+.++. +..+++.+..+
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM  185 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence              12445678899999999999888899999999887754332211          112455666653 34555667788


Q ss_pred             eEEEEeCCCCeeeeeec--CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcE
Q 005277          570 TIMMWDLASGRCVTPLM--GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV  647 (704)
Q Consensus       570 ~I~iwdl~~~~~~~~~~--~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V  647 (704)
                      .|..+++..........  ........+++                                  +++|+++++...++.|
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~----------------------------------d~dG~l~va~~~~~~V  231 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAF----------------------------------DVEGNLYGATHIYNSV  231 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEEESCCCSSEEE----------------------------------BTTCCEEEECBTTCCE
T ss_pred             eEEeccccccccccccccccCCCCCcceEE----------------------------------CCCCCEEEEEcCCCcE
Confidence            88888876543322111  11122334555                                  8899988888889999


Q ss_pred             EEEeCCCCccccccccccCccccccccccCCCCcCeEEEEE---ccCCcEEEEeecCC
Q 005277          648 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF---SRRNLLFAAGALSK  702 (704)
Q Consensus       648 ~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~f---s~~g~~La~gs~dg  702 (704)
                      ..++......              .+......-...++++|   ++|++.|.+++..+
T Consensus       232 ~~i~p~G~~~--------------~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         232 VRIAPDRSTT--------------IIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             EEECTTCCEE--------------EEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             EEECCCCCEE--------------EEEecCCCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence            9997654321              12223333345789999   67877776655443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.02  E-value=9.5e-08  Score=98.89  Aligned_cols=264  Identities=11%  Similarity=0.083  Sum_probs=144.1

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (704)
Q Consensus       350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (704)
                      ....+.-++|+|++++|.+.. .+.+..|.+.............  ....+......+++....+.....+.+.|....+
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~--~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHP--IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEE--CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeec--CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEc
Confidence            444566799999999988775 4668888877532211110000  0001111111111111112222233445555555


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEE-eecCCcCeeEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeE---Ee--c
Q 005277          430 SPLGDFILSSSADTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLR---IM--A  502 (704)
Q Consensus       430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~~~l~sgs~-dg~i~lwd~~~~~~~~---~~--~  502 (704)
                      .+++........+...++..     .... -+.....+.++.|+|+|+++++++. ...|.+|+......+.   ..  .
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~  189 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEK-----NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP  189 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEE-----EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred             cCCCCcceeEeeeecceecC-----cccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeec
Confidence            54444332222221111111     0111 1112334789999999998888764 4578888765433221   11  1


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEee-------------------cCCCCEEEEEEecCCCEE
Q 005277          503 GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFI-------------------GHRSMILSLAMSPDGRYM  562 (704)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~-------------------~h~~~i~~l~~spdg~~l  562 (704)
                      ........++|+|+++++++.. .+++|.+|++..+.......                   .+......+.++|||++|
T Consensus       190 ~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l  269 (365)
T d1jofa_         190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             CCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEE
Confidence            2345688999999999886655 57889999987654321110                   112235678999999999


Q ss_pred             EEEeC------CCeEEEEeCCCCeeeeee------cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277          563 ASGDE------DGTIMMWDLASGRCVTPL------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC  630 (704)
Q Consensus       563 ~sg~~------dg~I~iwdl~~~~~~~~~------~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (704)
                      +++..      .+.|..|++.....+...      .........+++                                 
T Consensus       270 yvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~---------------------------------  316 (365)
T d1jofa_         270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP---------------------------------  316 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE---------------------------------
T ss_pred             EEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEe---------------------------------
Confidence            87642      234777776543222111      112223344555                                 


Q ss_pred             cCC-CCCEEEEE-eCCCcEEEEeCCCC
Q 005277          631 ASC-EGSLLASG-SADCTVKLWDVTTS  655 (704)
Q Consensus       631 ~s~-~g~~lasg-s~Dg~V~iWd~~~~  655 (704)
                       +| +|++|+++ ..++.|.+|++...
T Consensus       317 -~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         317 -CPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             -CTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             -cCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence             76 78877655 57799999988654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=2.9e-07  Score=90.09  Aligned_cols=218  Identities=18%  Similarity=0.168  Sum_probs=136.5

Q ss_pred             CCccCeEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CCeEEE--EEC
Q 005277          419 GHSGPVYSASFSPLGDFILSSSAD-T--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARI--WSM  492 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~~l~s~s~D-g--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg~i~l--wd~  492 (704)
                      .+...+.+.+|||||+.|+-.+.. +  .+.+.+...+.. .....+........|+|+|..++.... ++...+  +..
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            355678899999999999855433 2  366666665443 344557778889999999998887653 333222  333


Q ss_pred             CCCceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCC--cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC
Q 005277          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG  569 (704)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg--~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg  569 (704)
                      ..... ..............+++++..++..+ .+|  .|.+.++..+... ....+........|+|+|+.++..+.++
T Consensus       115 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~~  192 (269)
T d2hqsa1         115 ASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNG  192 (269)
T ss_dssp             TTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECS
T ss_pred             ccccc-eeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccccccccccceeEEEeecC
Confidence            33222 22233444445556777776665544 444  4556666655433 3445566778889999999888765543


Q ss_pred             ---eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC---
Q 005277          570 ---TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA---  643 (704)
Q Consensus       570 ---~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~---  643 (704)
                         .|.+.|...+..  .+..+........|                                  ||||+.|+-.+.   
T Consensus       193 ~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~----------------------------------SPDG~~i~f~s~~~~  236 (269)
T d2hqsa1         193 GQQHIAKQDLATGGV--QVLSSTFLDETPSL----------------------------------APNGTMVIYSSSQGM  236 (269)
T ss_dssp             SCEEEEEEETTTCCE--EECCCSSSCEEEEE----------------------------------CTTSSEEEEEEEETT
T ss_pred             CceeeeEeecccccc--eEeecCccccceEE----------------------------------CCCCCEEEEEEcCCC
Confidence               444555554433  33334455566677                                  999998875543   


Q ss_pred             CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccC
Q 005277          644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR  691 (704)
Q Consensus       644 Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~  691 (704)
                      ...|++|++..+..                ..+....+.+...+|||.
T Consensus       237 ~~~l~~~~~dg~~~----------------~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         237 GSVLNLVSTDGRFK----------------ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEEEEETTSCCE----------------EECCCSSSEEEEEEECCC
T ss_pred             CcEEEEEECCCCCE----------------EEEeCCCCcEEeEEeCCC
Confidence            34688999876542                233344567788899984

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.00  E-value=2.5e-07  Score=93.48  Aligned_cols=248  Identities=8%  Similarity=0.076  Sum_probs=158.9

Q ss_pred             eCCCCEEEEEEcCCCCEEEEEeC-------CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277          349 NTHNGLNCASISQDGSLVAGGFS-------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (704)
Q Consensus       349 ~~~~~V~~~~fs~dg~~lasg~~-------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (704)
                      ..-...-.++|.++|++.++...       +|.|..|+..+........                        .......
T Consensus        15 ~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~------------------------~~~~~~~   70 (314)
T d1pjxa_          15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK------------------------PEVNGYG   70 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC------------------------CEETTEE
T ss_pred             cCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEEC------------------------CccccCC
Confidence            33445677899999998876433       3567777765421111000                        0001112


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCC----cCeeEEEEcCCCCEEEEEeC--------------
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN----YPVWDVQFNPQGHYFASSSH--------------  483 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~----~~V~~v~~sp~~~~l~sgs~--------------  483 (704)
                      +.-..+.|.++++.++++...+.|..++..............    ...+++++.++|.+.++-..              
T Consensus        71 g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             CcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceecc
Confidence            335789999999988888777788888887543322222111    13578999999988776432              


Q ss_pred             -CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCC----EE-EEEECCCcEEEEeCCCCcEEE------Eeec-CCCCE
Q 005277          484 -DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN----YI-ATGSSDKTVRLWDVSSGECVR------IFIG-HRSMI  550 (704)
Q Consensus       484 -dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~----~l-~tgs~dg~I~iwd~~~~~~~~------~~~~-h~~~i  550 (704)
                       .|.+..++.+ ++.. .+......-+.++|+|+++    .| ++-+..+.|+.||+.....+.      .+.+ +....
T Consensus       151 ~~G~v~~~~~d-g~~~-~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~p  228 (314)
T d1pjxa_         151 KFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA  228 (314)
T ss_dssp             SCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred             CCceEEEEeec-Ccee-EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccc
Confidence             2344444443 2222 2223334457899998764    44 445677889999876432221      1111 22346


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277          551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC  630 (704)
Q Consensus       551 ~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (704)
                      ..+++..+|++.++....+.|.+||...++.+..+.......++++|                                 
T Consensus       229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~af---------------------------------  275 (314)
T d1pjxa_         229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF---------------------------------  275 (314)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE---------------------------------
T ss_pred             eeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEE---------------------------------
Confidence            78999999998888888899999998888877777666667788888                                 


Q ss_pred             cCCCCC-EEEEEeCCCcEEEEeCCCCc
Q 005277          631 ASCEGS-LLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       631 ~s~~g~-~lasgs~Dg~V~iWd~~~~~  656 (704)
                       .++++ ++++.+.+|.|...++....
T Consensus       276 -g~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         276 -KPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             -CTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             -eCCCCEEEEEECCCCcEEEEECCCCC
Confidence             88887 55677778888888876543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.00  E-value=4.9e-08  Score=95.93  Aligned_cols=227  Identities=10%  Similarity=0.080  Sum_probs=147.7

Q ss_pred             CeEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          423 PVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~-s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      .-.++++.++|...++. +..+.+..++............-......++++++++++++....+.+++++-.+...+...
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~   94 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF   94 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence            45799999999966654 45577777776644333322222234578999999998888777777777665554443322


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~  581 (704)
                      . ......++++.++++++++-.....+..++..................+++++|+|+.+++...++.|..+|......
T Consensus        95 ~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~  173 (260)
T d1rwia_          95 D-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  173 (260)
T ss_dssp             C-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             e-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee
Confidence            2 335678999999999888776777788887655433222222234567899999999888888889999999776543


Q ss_pred             eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277          582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT  661 (704)
Q Consensus       582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~  661 (704)
                      .......-.....+++                                  .++|+++++....+.|..++.......   
T Consensus       174 ~~~~~~~~~~p~gi~~----------------------------------d~~g~l~vsd~~~~~i~~~~~~~~~~~---  216 (260)
T d1rwia_         174 VVLPFTDITAPWGIAV----------------------------------DEAGTVYVTEHNTNQVVKLLAGSTTST---  216 (260)
T ss_dssp             EECCCSSCCSEEEEEE----------------------------------CTTCCEEEEETTTTEEEEECTTCSCCE---
T ss_pred             eeeeccccCCCcccee----------------------------------eeeeeeeeeecCCCEEEEEeCCCCeEE---
Confidence            3322233334455666                                  888998888888888888876543211   


Q ss_pred             ccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277          662 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  699 (704)
Q Consensus       662 ~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs  699 (704)
                                 +... ..-.....|+++++|.++++-.
T Consensus       217 -----------~~~~-~~~~~P~~i~~d~~g~l~vad~  242 (260)
T d1rwia_         217 -----------VLPF-TGLNTPLAVAVDSDRTVYVADR  242 (260)
T ss_dssp             -----------ECCC-CSCCCEEEEEECTTCCEEEEEG
T ss_pred             -----------EEcc-CCCCCeEEEEEeCCCCEEEEEC
Confidence                       1111 1123467899999998777643

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=2.9e-07  Score=90.05  Aligned_cols=217  Identities=12%  Similarity=0.085  Sum_probs=136.3

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCC-Cc--EEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSD-SS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~d-g~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      +..+...+.+.+|||||+.||..... +.  +.+.+...                             .....+..+.+.
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~   84 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-----------------------------GAVRQVASFPRH   84 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-----------------------------CCEEEEECCSSC
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeeccc-----------------------------CceeEEeeeecc
Confidence            34567778899999999999976543 33  33333332                             122344456788


Q ss_pred             eEEEEEcCCCCEEEEEeC-CCeEEEE--eCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE-eCCC--eEEEEECCCCce
Q 005277          424 VYSASFSPLGDFILSSSA-DTTIRLW--STKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDR--TARIWSMDRIQP  497 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~-Dg~I~lw--d~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg-s~dg--~i~lwd~~~~~~  497 (704)
                      .....|+|+++.++..+. ++...++  ...... ...............+++++..++.. ..+|  .+.+.++.....
T Consensus        85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~  163 (269)
T d2hqsa1          85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP  163 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred             cccceecCCCCeeeEeeecCCccceeeccccccc-ceeeeeccccccccccccccccceecccccCCceEeeeecccccc
Confidence            889999999998875543 3333333  332222 22223344445556677776655444 4455  455556655433


Q ss_pred             eEEeccCCCCeeEEEEcCCCCEEEEEECCC-c--EEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC---CCeE
Q 005277          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDK-T--VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE---DGTI  571 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg-~--I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~---dg~I  571 (704)
                       .....+........|+|+++.++..+.++ .  +.+.|...+..  ....+........|||||++|+..+.   ...|
T Consensus       164 -~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l  240 (269)
T d2hqsa1         164 -QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVL  240 (269)
T ss_dssp             -EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred             -eeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEE
Confidence             33344566677889999999988876543 3  44455555443  33345566778899999999875543   3578


Q ss_pred             EEEeCCCCeeeeeecCCCceeeeeee
Q 005277          572 MMWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       572 ~iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      .+|++..+.. ..+....+.+...+|
T Consensus       241 ~~~~~dg~~~-~~lt~~~g~~~~p~W  265 (269)
T d2hqsa1         241 NLVSTDGRFK-ARLPATDGQVKFPAW  265 (269)
T ss_dssp             EEEETTSCCE-EECCCSSSEEEEEEE
T ss_pred             EEEECCCCCE-EEEeCCCCcEEeEEe
Confidence            9999976654 456556777888888

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.98  E-value=9.6e-08  Score=98.86  Aligned_cols=257  Identities=9%  Similarity=0.008  Sum_probs=140.2

Q ss_pred             CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--cCCcCeeEEEEcCCCCEEE--EEe-CCCeEEEEECCC
Q 005277          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFA--SSS-HDRTARIWSMDR  494 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~l~--sgs-~dg~i~lwd~~~  494 (704)
                      ...++..|+|+|++++|++++. +.+..|.+.....+....  ........+.++++++.++  ++. ..+++..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            4455677999999999988765 468888776543332222  1233456788888887533  322 345555544321


Q ss_pred             C-------------ce---eEE-eccCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCC-CcEEE--Ee--ecCCCCEE
Q 005277          495 I-------------QP---LRI-MAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSS-GECVR--IF--IGHRSMIL  551 (704)
Q Consensus       495 ~-------------~~---~~~-~~~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~~-~~~~~--~~--~~h~~~i~  551 (704)
                      .             ..   ... -......+.++.|+|+|+++++++. ...|.+|+... +....  ..  ........
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence            1             10   111 1112234789999999999988864 45788887653 33221  11  13356789


Q ss_pred             EEEEecCCCEEEEEe-CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277          552 SLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC  630 (704)
Q Consensus       552 ~l~~spdg~~l~sg~-~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (704)
                      .++|+|+|+++++.. .++.|.+|++..+...........++....+          .....     .............
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-----~~~~~~~~~~~i~  261 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI----------PDRDP-----ETGKGLYRADVCA  261 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC----------CCBCT-----TTSSBSEEEEEEE
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccc----------ccccc-----ccccccCCccceE
Confidence            999999999886655 6789999998765432211100000000000          00000     0000000011112


Q ss_pred             cCCCCCEEEEEeC-C-----CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc-CCcEEEEeecC
Q 005277          631 ASCEGSLLASGSA-D-----CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RNLLFAAGALS  701 (704)
Q Consensus       631 ~s~~g~~lasgs~-D-----g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~-~g~~La~gs~d  701 (704)
                      ++|+|++|+++.. +     +.|..|++.....+...         ..+...........+++|+| +|++|+++..+
T Consensus       262 ~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~---------~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~  330 (365)
T d1jofa_         262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ---------LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE---------EEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             ECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeE---------eEeeEEEcCCCCccEEEecCCCCCEEEEEeCC
Confidence            2999999877642 2     23777777654332111         11222233334457799998 78877776543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.97  E-value=3.6e-07  Score=90.50  Aligned_cols=241  Identities=10%  Similarity=0.178  Sum_probs=161.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (704)
                      ...++++++|+++++-..+..|++||.+..........  .                     .-.+....-..+++.++.
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~--~---------------------~~~~~~~~p~~~~~~~~~   81 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGEC--G---------------------KRDSQLLYPNRVAVVRNS   81 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCB--S---------------------SSTTCBSSEEEEEEETTT
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEeccc--C---------------------CCcccccccccccccccc
Confidence            57899999999988888889999998654111100000  0                     000111123345554443


Q ss_pred             -CEEEE-EeCCCeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe--ccCCCCe
Q 005277          434 -DFILS-SSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM--AGHLSDV  508 (704)
Q Consensus       434 -~~l~s-~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~--~~~~~~V  508 (704)
                       ..+++ .+.++.|..++.. +.....+. ........+++.++|.++++....+.+.+++.+. +.+..+  ..+....
T Consensus        82 ~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~  159 (279)
T d1q7fa_          82 GDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFP  159 (279)
T ss_dssp             TEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSE
T ss_pred             cccceeccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeeccccccccccc
Confidence             33433 3455677777765 55555553 3345678899999999888888888888888654 455554  3455677


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCCCEEEEEeC-CCeEEEEeCCCCeeeeee
Q 005277          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDE-DGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~~-dg~I~iwdl~~~~~~~~~  585 (704)
                      ..+++.++++.+++....+.|++||. +|+.+..+-  +.......|++.++|+.+++-.. ++.|.+|+ .+|+.+..+
T Consensus       160 ~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~  237 (279)
T d1q7fa_         160 NGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISAL  237 (279)
T ss_dssp             EEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEE
T ss_pred             ceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEE
Confidence            88999999999888888999999996 567776663  34456889999999997776543 45799998 567776665


Q ss_pred             cCC--CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277          586 MGH--TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST  656 (704)
Q Consensus       586 ~~h--~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~  656 (704)
                      ...  ....+.++.                                  .++|.+++ ++.+++|++|......
T Consensus       238 ~~~~~~~~p~~vav----------------------------------~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         238 ESKVKHAQCFDVAL----------------------------------MDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EESSCCSCEEEEEE----------------------------------ETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             eCCCCCCCEeEEEE----------------------------------eCCCcEEE-EeCCCeEEEEEeeeec
Confidence            322  223455555                                  78887555 4578999999987653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.94  E-value=2.3e-07  Score=93.16  Aligned_cols=213  Identities=9%  Similarity=0.056  Sum_probs=142.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (704)
                      -+..++++|||+++++...++.|..|+-..                              ....+....+.+.+++|+++
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g------------------------------~~~~~~~~~~~~~gla~~~d   78 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG------------------------------NQQIHATVEGKVSGLAFTSN   78 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC------------------------------CEEEEEECSSEEEEEEECTT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC------------------------------CEEEEEcCCCCcceEEEcCC
Confidence            577899999999999999999887776432                              11222334567899999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcee-EEe--ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-------
Q 005277          433 GDFILSSSADTTIRLWSTKLNANL-VCY--KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-------  502 (704)
Q Consensus       433 ~~~l~s~s~Dg~I~lwd~~~~~~~-~~~--~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~-------  502 (704)
                      |+++++...++.+..|+....... ..+  .........+.+.++++++++.+.++.+..++...+.......       
T Consensus        79 G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  158 (302)
T d2p4oa1          79 GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS  158 (302)
T ss_dssp             SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred             CCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcccee
Confidence            998888888888888886543321 111  2244568899999999999988888999888887764332221       


Q ss_pred             ---cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEE---EEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          503 ---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV---RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       503 ---~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~---~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                         ........+.+.. +..+++.+..+.|+.+++......   ..+. .......++++++|++.++...++.|..++.
T Consensus       159 ~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p  236 (302)
T d2p4oa1         159 NSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAP  236 (302)
T ss_dssp             STTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             eccCcccccccccccC-CceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECC
Confidence               1112345566643 334555667888888887654321   1121 2334567999999998888888999999986


Q ss_pred             CCCe-eeeeecCCCceeeeeee
Q 005277          577 ASGR-CVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       577 ~~~~-~~~~~~~h~~~V~sl~~  597 (704)
                      .... .+......-...++++|
T Consensus       237 ~G~~~~~~~~~~~~~~pt~vaf  258 (302)
T d2p4oa1         237 DRSTTIIAQAEQGVIGSTAVAF  258 (302)
T ss_dssp             TCCEEEEECGGGTCTTEEEEEE
T ss_pred             CCCEEEEEecCCCCCCceEEEE
Confidence            5432 12222222334556666

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.86  E-value=3.7e-06  Score=84.75  Aligned_cols=221  Identities=8%  Similarity=0.057  Sum_probs=141.9

Q ss_pred             EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      .......+..++|.++|++.++-...+.|..|+....                            ..............+
T Consensus        35 ~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~----------------------------~~~~~~~~~~~~p~g   86 (319)
T d2dg1a1          35 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK----------------------------EIKRPFVSHKANPAA   86 (319)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC----------------------------CEEEEEECSSSSEEE
T ss_pred             eccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCC----------------------------eEEEEEeCCCCCeeE
Confidence            3334445678999999998888888898888876541                            112222334456789


Q ss_pred             EEEcCCCCEEEEEeC----CCeEEEEeCCCCceeEEeec--CCcCeeEEEEcCCCCEEEEEeC------CCeEEEEECCC
Q 005277          427 ASFSPLGDFILSSSA----DTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSH------DRTARIWSMDR  494 (704)
Q Consensus       427 l~~sp~~~~l~s~s~----Dg~I~lwd~~~~~~~~~~~~--h~~~V~~v~~sp~~~~l~sgs~------dg~i~lwd~~~  494 (704)
                      ++++++|+++++...    .+.+...+............  -.....++.+.++|++.++...      .+.+..++.+.
T Consensus        87 la~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg  166 (319)
T d2dg1a1          87 IKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF  166 (319)
T ss_dssp             EEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred             EEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc
Confidence            999999997776543    23455555554444333321  1234778999999987666432      23355555544


Q ss_pred             CceeEEeccCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCC-cEEE-------EeecCCCCEEEEEEecCCCEEEEE
Q 005277          495 IQPLRIMAGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSG-ECVR-------IFIGHRSMILSLAMSPDGRYMASG  565 (704)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~-~~~~-------~~~~h~~~i~~l~~spdg~~l~sg  565 (704)
                      . .+..+.......+.++|+|+++.|+++ +..+.|+.||+... ....       ...........|++.++|++.++.
T Consensus       167 ~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~  245 (319)
T d2dg1a1         167 R-TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  245 (319)
T ss_dssp             C-CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             c-eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEE
Confidence            3 333333334456789999999877555 56789999998632 2111       111222346789999999988888


Q ss_pred             eCCCeEEEEeCCCCeeeeeecC------CCceeeeeee
Q 005277          566 DEDGTIMMWDLASGRCVTPLMG------HTSCVWTLAY  597 (704)
Q Consensus       566 ~~dg~I~iwdl~~~~~~~~~~~------h~~~V~sl~~  597 (704)
                      ...+.|.+||. .|+.+..+..      +...++++.|
T Consensus       246 ~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~  282 (319)
T d2dg1a1         246 YGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQF  282 (319)
T ss_dssp             ETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEE
T ss_pred             cCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEE
Confidence            88999999994 7888777642      3334566666

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.83  E-value=1.2e-06  Score=88.25  Aligned_cols=229  Identities=10%  Similarity=0.081  Sum_probs=142.4

Q ss_pred             CeEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCCceeEEeecC----CcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277          423 PVYSASFSPLGDFILSSSA-------DTTIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~-------Dg~I~lwd~~~~~~~~~~~~h----~~~V~~v~~sp~~~~l~sgs~dg~i~lwd  491 (704)
                      ...+++|.++|+++++...       +|+|..||..++.........    ...-..+.|.++++.++++...+.+..++
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            3567789999997766433       467889998877654433221    12356899999999888888778888899


Q ss_pred             CCCCceeEEeccCC----CCeeEEEEcCCCCEEEEEEC---------------CCcEEEEeCCCCcEEEEeecCCCCEEE
Q 005277          492 MDRIQPLRIMAGHL----SDVDCVRWHINCNYIATGSS---------------DKTVRLWDVSSGECVRIFIGHRSMILS  552 (704)
Q Consensus       492 ~~~~~~~~~~~~~~----~~V~~v~~~p~~~~l~tgs~---------------dg~I~iwd~~~~~~~~~~~~h~~~i~~  552 (704)
                      .+............    ...+.+++.++|++.++-..               .|.|..++. .++..... ..-...+.
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~-~~~~~pNG  176 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVD-TAFQFPNG  176 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEE-EEESSEEE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEee-CCcceeee
Confidence            87653322111111    13577999999988777432               234544543 34433332 23334578


Q ss_pred             EEEecCCC-----EEEEEeCCCeEEEEeCCCCeeee------eecC-CCceeeeeeeeeeehccccccccccccccceee
Q 005277          553 LAMSPDGR-----YMASGDEDGTIMMWDLASGRCVT------PLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF  620 (704)
Q Consensus       553 l~~spdg~-----~l~sg~~dg~I~iwdl~~~~~~~------~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~  620 (704)
                      ++|+|++.     +.++-+..+.|..||+.....+.      .+.+ +......+++                       
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiav-----------------------  233 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF-----------------------  233 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE-----------------------
T ss_pred             eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEE-----------------------
Confidence            99999864     44555677889988875432221      1111 1112223443                       


Q ss_pred             eeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCc-EEEEee
Q 005277          621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGA  699 (704)
Q Consensus       621 ~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~-~La~gs  699 (704)
                                 ..+|++.++....+.|.+||-..+..               +..+......+.+++|.|+++ ++++.+
T Consensus       234 -----------D~~GnlyVa~~~~g~I~~~dp~~g~~---------------~~~i~~p~~~~t~~afg~d~~~lyVt~~  287 (314)
T d1pjxa_         234 -----------DEDNNLLVANWGSSHIEVFGPDGGQP---------------KMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             -----------BTTCCEEEEEETTTEEEEECTTCBSC---------------SEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             -----------ecCCcEEEEEcCCCEEEEEeCCCCEE---------------EEEEECCCCCEEEEEEeCCCCEEEEEEC
Confidence                       78899888888889999999776532               222333345678999999986 445544


Q ss_pred             cCC
Q 005277          700 LSK  702 (704)
Q Consensus       700 ~dg  702 (704)
                      .+|
T Consensus       288 ~~g  290 (314)
T d1pjxa_         288 ENN  290 (314)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            433

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=7.5e-07  Score=95.03  Aligned_cols=183  Identities=13%  Similarity=0.128  Sum_probs=111.3

Q ss_pred             CEEEEEEcCCCCEEEEEeC---------CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277          353 GLNCASISQDGSLVAGGFS---------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (704)
Q Consensus       353 ~V~~~~fs~dg~~lasg~~---------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (704)
                      .+....||||+++++.+..         .+.+.|+|+.+.....                          +.......+.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~--------------------------l~~~~~~~~~  115 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS--------------------------LDPPEVSNAK  115 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE--------------------------CCCTTCCSCC
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee--------------------------ccCccCCccc
Confidence            4566789999999888753         4677888887532111                          1111122344


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-cCCcC-----------------eeEEEEcCCCCEEEEEeCC-
Q 005277          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYP-----------------VWDVQFNPQGHYFASSSHD-  484 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~-----------------V~~v~~sp~~~~l~sgs~d-  484 (704)
                      +....|||||+.|+-.. ++.|.+.+..++..++... +....                 -..+.|||||++||....| 
T Consensus       116 l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~  194 (465)
T d1xfda1         116 LQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND  194 (465)
T ss_dssp             CSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred             cceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecc
Confidence            55678999999988765 5678888887665544332 21111                 2467899999999987522 


Q ss_pred             C---------------------------------eEEEEECCCCceeEEec------cCCCCeeEEEEcCCCCEEEEEEC
Q 005277          485 R---------------------------------TARIWSMDRIQPLRIMA------GHLSDVDCVRWHINCNYIATGSS  525 (704)
Q Consensus       485 g---------------------------------~i~lwd~~~~~~~~~~~------~~~~~V~~v~~~p~~~~l~tgs~  525 (704)
                      .                                 .+.++|++.+.......      ....-+..+.|.|++++++....
T Consensus       195 s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~n  274 (465)
T d1xfda1         195 SRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN  274 (465)
T ss_dssp             TTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE
T ss_pred             cccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEc
Confidence            2                                 23444444332221111      11112567899999887666432


Q ss_pred             -C---CcEEEEeCCCCcEEEEeecCC-CCE----EEEEEecCCCEE
Q 005277          526 -D---KTVRLWDVSSGECVRIFIGHR-SMI----LSLAMSPDGRYM  562 (704)
Q Consensus       526 -d---g~I~iwd~~~~~~~~~~~~h~-~~i----~~l~~spdg~~l  562 (704)
                       +   ..|.++|..+|++...+..+. +.|    ....|+|||+.+
T Consensus       275 R~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         275 RAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             cccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence             2   358889999998776654322 222    346789999843

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.81  E-value=4.5e-06  Score=84.12  Aligned_cols=234  Identities=10%  Similarity=0.007  Sum_probs=147.9

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC----CeEEEEECCCCce
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRIQP  497 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d----g~i~lwd~~~~~~  497 (704)
                      ..+.+++|.++|++.++-...+.|..|+..+......+.........++++++|+++++...+    +.+...+......
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            445789999999977777788999999998776666665566678899999999987776432    3355555555444


Q ss_pred             eEEecc--CCCCeeEEEEcCCCCEEEEEEC------CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE-EeCC
Q 005277          498 LRIMAG--HLSDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS-GDED  568 (704)
Q Consensus       498 ~~~~~~--~~~~V~~v~~~p~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s-g~~d  568 (704)
                      ......  .......+++.|+|++.++...      .+.+..++...+. +..+...-...+.++|+|+++.|+. -+..
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~  198 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTA  198 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecccC
Confidence            443332  2234677899999987666432      2335555544333 3333233345678999999987654 4567


Q ss_pred             CeEEEEeCCCC-eeeeee-------cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE
Q 005277          569 GTIMMWDLASG-RCVTPL-------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS  640 (704)
Q Consensus       569 g~I~iwdl~~~-~~~~~~-------~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las  640 (704)
                      +.|..||+... ......       .........+++                                  ..+|++.++
T Consensus       199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~v----------------------------------D~~G~l~Va  244 (319)
T d2dg1a1         199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI----------------------------------DSDDNLYVA  244 (319)
T ss_dssp             TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE----------------------------------BTTCCEEEE
T ss_pred             CceEEEEEcCCCceeccccceeeeccCCccceeeeeE----------------------------------cCCCCEEEE
Confidence            89999997642 111111       001111223333                                  889998888


Q ss_pred             EeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277          641 GSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  700 (704)
Q Consensus       641 gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~  700 (704)
                      ....|.|.+||- .++.+..+.-         -..-.++...+++++|.+.+..|.+.+.
T Consensus       245 ~~~~g~V~~~~p-~G~~l~~i~~---------P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         245 MYGQGRVLVFNK-RGYPIGQILI---------PGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EETTTEEEEECT-TSCEEEEEEC---------TTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EcCCCEEEEECC-CCcEEEEEeC---------CCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            888999999995 4554322211         0111234456789999987766655443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.72  E-value=9.5e-06  Score=79.88  Aligned_cols=224  Identities=12%  Similarity=0.167  Sum_probs=150.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec------CCcCeeEEEEcCC-CCEEEEE-eCCCeEEEEECCC
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG------HNYPVWDVQFNPQ-GHYFASS-SHDRTARIWSMDR  494 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~------h~~~V~~v~~sp~-~~~l~sg-s~dg~i~lwd~~~  494 (704)
                      ....++++++++.+++-..+..|++||.+ +..+..+..      .......+++.++ +.++++. +.++.|..++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            35799999999988887788899999976 666655532      1123445666554 3444433 345577777764 


Q ss_pred             CceeEEec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277          495 IQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDEDGTI  571 (704)
Q Consensus       495 ~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~~dg~I  571 (704)
                      +.....+. ........+++.+++.++++....+.+.+++. +++.+..+.  .+......+++.++|+.+++....+.|
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V  180 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  180 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccce
Confidence            44555553 34556788999999998888887888888885 566666653  345678899999999999898899999


Q ss_pred             EEEeCCCCeeeeeec--CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC-CCcEE
Q 005277          572 MMWDLASGRCVTPLM--GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA-DCTVK  648 (704)
Q Consensus       572 ~iwdl~~~~~~~~~~--~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~-Dg~V~  648 (704)
                      .+||. .++.+.++.  ++......+++                                  .++|+++++-+. ++.|.
T Consensus       181 ~~~d~-~G~~~~~~g~~g~~~~P~giav----------------------------------D~~G~i~Vad~~~~~~v~  225 (279)
T d1q7fa_         181 KVFNY-EGQYLRQIGGEGITNYPIGVGI----------------------------------NSNGEILIADNHNNFNLT  225 (279)
T ss_dssp             EEEET-TCCEEEEESCTTTSCSEEEEEE----------------------------------CTTCCEEEEECSSSCEEE
T ss_pred             eeeec-CCceeeeecccccccCCccccc----------------------------------ccCCeEEEEECCCCcEEE
Confidence            99995 556666553  22233445555                                  889998877654 45799


Q ss_pred             EEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEe
Q 005277          649 LWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG  698 (704)
Q Consensus       649 iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~g  698 (704)
                      +|+.. ++.+..            +. ..........|++.++|.++++.
T Consensus       226 ~f~~~-G~~~~~------------~~-~~~~~~~p~~vav~~dG~l~V~~  261 (279)
T d1q7fa_         226 IFTQD-GQLISA------------LE-SKVKHAQCFDVALMDDGSVVLAS  261 (279)
T ss_dssp             EECTT-SCEEEE------------EE-ESSCCSCEEEEEEETTTEEEEEE
T ss_pred             EECCC-CCEEEE------------Ee-CCCCCCCEeEEEEeCCCcEEEEe
Confidence            99843 332111            10 01222346889999999876654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=4.5e-06  Score=88.80  Aligned_cols=201  Identities=9%  Similarity=0.051  Sum_probs=126.2

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEE
Q 005277          358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL  437 (704)
Q Consensus       358 ~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~  437 (704)
                      .|.+++.++.. ..+|.|.+|++.+........                         ...-..-.+....||||+++++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~-------------------------~~~~~~~~~~~~~~SpD~~~vl   76 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIE-------------------------GKKIESLRAIRYEISPDREYAL   76 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEEC-------------------------TTTTTTTTCSEEEECTTSSEEE
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEc-------------------------CccccccccceeEECCCCCeEE
Confidence            47778776543 457889999987633211100                         0001123566788999999987


Q ss_pred             EEe---------CCCeEEEEeCCCCceeEEee--cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC-
Q 005277          438 SSS---------ADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL-  505 (704)
Q Consensus       438 s~s---------~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~-  505 (704)
                      .+.         ..+.+.++|+.++.......  .....+....|||+|+.+|-.. ++.+.+.+...+..++...... 
T Consensus        77 ~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~  155 (465)
T d1xfda1          77 FSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKE  155 (465)
T ss_dssp             EEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBT
T ss_pred             EEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCc
Confidence            653         35788999999876543322  2344566789999999998875 5788898888776665543221 


Q ss_pred             CC-----------------eeEEEEcCCCCEEEEEECC-Cc---------------------------------EEEEeC
Q 005277          506 SD-----------------VDCVRWHINCNYIATGSSD-KT---------------------------------VRLWDV  534 (704)
Q Consensus       506 ~~-----------------V~~v~~~p~~~~l~tgs~d-g~---------------------------------I~iwd~  534 (704)
                      ..                 -..+.|+|||++||....| ..                                 +.++|+
T Consensus       156 ~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~  235 (465)
T d1xfda1         156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL  235 (465)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred             ceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEec
Confidence            11                 1467899999999986522 22                                 344444


Q ss_pred             CCCcEEEEee------cCCCCEEEEEEecCCCEEEEEeC----CCeEEEEeCCCCeeeeee
Q 005277          535 SSGECVRIFI------GHRSMILSLAMSPDGRYMASGDE----DGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       535 ~~~~~~~~~~------~h~~~i~~l~~spdg~~l~sg~~----dg~I~iwdl~~~~~~~~~  585 (704)
                      .++.......      .....+..+.|+|++++++....    ...|.++|..+|++...+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~  296 (465)
T d1xfda1         236 NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH  296 (465)
T ss_dssp             SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred             CCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEE
Confidence            4332211111      11224678899999987666432    236888999998765544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.36  E-value=0.00019  Score=70.93  Aligned_cols=209  Identities=10%  Similarity=0.026  Sum_probs=139.9

Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277          355 NCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (704)
Q Consensus       355 ~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (704)
                      -+..|++ ++.+..+=...+.|.-||..+..                             ...+ .....+.++++.+++
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~-----------------------------~~~~-~~~~~~~~i~~~~dg   70 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGR-----------------------------KTVH-ALPFMGSALAKISDS   70 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTE-----------------------------EEEE-ECSSCEEEEEEEETT
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCe-----------------------------EEEE-ECCCCcEEEEEecCC
Confidence            3566776 45566565567888888876521                             1111 123467889999888


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeec----CCcCeeEEEEcCCCCEEEEEeC----CCeEEEEECCCCceeEEeccCC
Q 005277          434 DFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNPQGHYFASSSH----DRTARIWSMDRIQPLRIMAGHL  505 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~v~~sp~~~~l~sgs~----dg~i~lwd~~~~~~~~~~~~~~  505 (704)
                      .++++ +.+ -+.++|..+++.......    ....+.++.+.|+|++.++...    .+.-.+|.+..++...... ..
T Consensus        71 ~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~  147 (295)
T d2ghsa1          71 KQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DI  147 (295)
T ss_dssp             EEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EE
T ss_pred             CEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-cc
Confidence            76664 455 588999998875443321    1235789999999987665432    2345667666665544443 33


Q ss_pred             CCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCC------cE--EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          506 SDVDCVRWHINCNYIATG-SSDKTVRLWDVSSG------EC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       506 ~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~------~~--~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                      ..-+.++|+++++.++.+ +..+.|..|++...      +.  ...+.+..+....+++..+|++.++.-..|.|..|| 
T Consensus       148 ~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-  226 (295)
T d2ghsa1         148 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-  226 (295)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-
T ss_pred             CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-
Confidence            456789999999876554 55788988887421      11  112234455688999999999888777888999999 


Q ss_pred             CCCeeeeeecCCCceeeeeee
Q 005277          577 ASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       577 ~~~~~~~~~~~h~~~V~sl~~  597 (704)
                      ..|+.+..+.-....+++++|
T Consensus       227 p~G~~~~~i~lP~~~~T~~~F  247 (295)
T d2ghsa1         227 TDGNHIARYEVPGKQTTCPAF  247 (295)
T ss_dssp             TTCCEEEEEECSCSBEEEEEE
T ss_pred             CCCcEeeEecCCCCceEEEEE
Confidence            568888888766667888888

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.27  E-value=4.3e-05  Score=74.18  Aligned_cols=228  Identities=14%  Similarity=0.061  Sum_probs=125.0

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCE
Q 005277          358 SISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF  435 (704)
Q Consensus       358 ~fs~d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~  435 (704)
                      ..|||  |+.+|..+ +|.|.+.++.+.                             ..+.+..+.+.+...+|||||+.
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g-----------------------------~~~~Lt~~~~~~~~p~~SPDG~~   54 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSG-----------------------------STRKIVSNLGVINNARFFPDGRK   54 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTC-----------------------------CEEEEECSSSEEEEEEECTTSSE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCC-----------------------------CEEEEecCCCcccCEEECCCCCE
Confidence            35788  99888764 566766677652                             12334556677889999999998


Q ss_pred             EEEEe-CC-----CeEEEEeCCCCceeEEee------cCCcCeeEEEEcCCCCEEEEEeC------CCeEEEEECCCCce
Q 005277          436 ILSSS-AD-----TTIRLWSTKLNANLVCYK------GHNYPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQP  497 (704)
Q Consensus       436 l~s~s-~D-----g~I~lwd~~~~~~~~~~~------~h~~~V~~v~~sp~~~~l~sgs~------dg~i~lwd~~~~~~  497 (704)
                      |+-.+ .+     ..|.+++..++.......      ..........|+|+|+.++....      ...+...+.+....
T Consensus        55 iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  134 (281)
T d1k32a2          55 IAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF  134 (281)
T ss_dssp             EEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred             EEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence            88443 22     247777777665543221      12234567899999999887642      22345555554433


Q ss_pred             eEEeccCCCCeeEEEEcCCCCEEEEEECCC-----------cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe
Q 005277          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDK-----------TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg-----------~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~  566 (704)
                      ...   +......+.+.+.+..++......           ...++....+... ....+........++++. .+....
T Consensus       135 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~  209 (281)
T d1k32a2         135 VPL---NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVGHR-IYFITD  209 (281)
T ss_dssp             EEC---CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEETTE-EEEEEC
T ss_pred             EEe---cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeecccccee-eccCCccccceeeeeccc-cceecc
Confidence            222   223333444434444444332211           1222222222222 223334445556666553 223333


Q ss_pred             C--CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277          567 E--DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD  644 (704)
Q Consensus       567 ~--dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D  644 (704)
                      .  ...|.++|+.++............+  ..|                                  +|+|+.|+-. .+
T Consensus       210 ~~~~~~l~~~d~~g~~~~~lt~~~~~~~--~~~----------------------------------SpDG~~I~f~-~~  252 (281)
T d1k32a2         210 IDGFGQIYSTDLDGKDLRKHTSFTDYYP--RHL----------------------------------NTDGRRILFS-KG  252 (281)
T ss_dssp             TTSSCEEEEEETTSCSCEECCCCCSSCE--EEE----------------------------------EESSSCEEEE-ET
T ss_pred             cccccceEEEeCCCCceEEeecCCCccc--ccC----------------------------------cCCCCEEEEE-eC
Confidence            2  3467778887665433222222222  234                                  8899887654 46


Q ss_pred             CcEEEEeCCCCcc
Q 005277          645 CTVKLWDVTTSTK  657 (704)
Q Consensus       645 g~V~iWd~~~~~~  657 (704)
                      |.|+++|+.+++.
T Consensus       253 ~~l~~~d~~~g~~  265 (281)
T d1k32a2         253 GSIYIFNPDTEKI  265 (281)
T ss_dssp             TEEEEECTTTCCE
T ss_pred             CEEEEEECCCCCE
Confidence            8899999988764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.20  E-value=0.0012  Score=64.93  Aligned_cols=221  Identities=11%  Similarity=0.046  Sum_probs=139.4

Q ss_pred             EEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277          425 YSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       425 ~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~  503 (704)
                      .+..|.+... +..+--..+.|.-||..+++.. .+. ....+.++.+.++|.++++ +.+ .+.++|..+++.......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            3556887555 4445556789999999877543 333 3456889999988876654 454 588999998875544331


Q ss_pred             ----CCCCeeEEEEcCCCCEEEEEEC----CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE-EeCCCeEEEE
Q 005277          504 ----HLSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS-GDEDGTIMMW  574 (704)
Q Consensus       504 ----~~~~V~~v~~~p~~~~l~tgs~----dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s-g~~dg~I~iw  574 (704)
                          ....++.+.+.|+|++.++...    .+.-.+|.+..++....... -.....++|+++++.++. -+..+.|..+
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~  175 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRV  175 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEe
Confidence                1124678889999987766442    23456777777766555543 335678999999986654 4567888888


Q ss_pred             eCCCCee--------eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277          575 DLASGRC--------VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT  646 (704)
Q Consensus       575 dl~~~~~--------~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~  646 (704)
                      ++.....        .....+..+....+..                                  ..+|++.++.-..|.
T Consensus       176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~v----------------------------------D~~GnlWva~~~~g~  221 (295)
T d2ghsa1         176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVC----------------------------------DAEGHIWNARWGEGA  221 (295)
T ss_dssp             EBCTTTCCBSSCCEEEEECTTSSSEEEEEEE----------------------------------CTTSCEEEEEETTTE
T ss_pred             eecccccccccceEEEeccCcccccccceEE----------------------------------cCCCCEEeeeeCCCc
Confidence            8743211        1111222233344444                                  889988888777889


Q ss_pred             EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEc-cCC-cEEEEeec
Q 005277          647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS-RRN-LLFAAGAL  700 (704)
Q Consensus       647 V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs-~~g-~~La~gs~  700 (704)
                      |..||- .++.+               ..+..-...+++++|- +++ .++++.+.
T Consensus       222 V~~~dp-~G~~~---------------~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         222 VDRYDT-DGNHI---------------ARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEEECT-TCCEE---------------EEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             eEEecC-CCcEe---------------eEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            999995 44332               2222222358999996 554 34455444

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=0.0017  Score=62.44  Aligned_cols=203  Identities=9%  Similarity=-0.028  Sum_probs=131.1

Q ss_pred             CCccCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCE-EEEEeCCCeEEEEECCCCc
Q 005277          419 GHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQ  496 (704)
Q Consensus       419 ~h~~~V~~l~~sp~~~~l~s~-s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~-l~sgs~dg~i~lwd~~~~~  496 (704)
                      .+...+.+++|.+.++.|+-+ ..++.|+..+++..............+.++++..-+.. .++-...+.|.+.+++...
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            344568889999887777644 56788999998866555545444456889999874444 4555667899999998766


Q ss_pred             eeEEeccCCCCeeEEEEcCCCCEEEEEECC-C--cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE-eCCCeEE
Q 005277          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIM  572 (704)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I~  572 (704)
                      ..............++++|...+++..... +  .|..-++............-.....+++.+.++.|+.+ ...+.|.
T Consensus       113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  192 (263)
T d1npea_         113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (263)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEE
Confidence            544444445678899999987777655432 2  35444554433333333334567899999887777655 4678899


Q ss_pred             EEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277          573 MWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV  652 (704)
Q Consensus       573 iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~  652 (704)
                      ..|+........+.+...+ .+++.                                  . ++.+..+-...+.|...|.
T Consensus       193 ~~~~~g~~~~~v~~~~~~P-~~lav----------------------------------~-~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         193 CLNPAQPGRRKVLEGLQYP-FAVTS----------------------------------Y-GKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             EEETTEEEEEEEEECCCSE-EEEEE----------------------------------E-TTEEEEEETTTTEEEEEET
T ss_pred             EEECCCCCeEEEECCCCCc-EEEEE----------------------------------E-CCEEEEEECCCCEEEEEEC
Confidence            9998765443333332222 34443                                  2 2334445456678888888


Q ss_pred             CCCcc
Q 005277          653 TTSTK  657 (704)
Q Consensus       653 ~~~~~  657 (704)
                      .++..
T Consensus       237 ~~g~~  241 (263)
T d1npea_         237 AISKE  241 (263)
T ss_dssp             TTTEE
T ss_pred             CCCcc
Confidence            77654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.86  E-value=0.00027  Score=68.22  Aligned_cols=208  Identities=13%  Similarity=0.078  Sum_probs=105.5

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeC-CC---c--EEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFS-DS---S--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~-dg---~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (704)
                      .+..+.+.+...+|||||+.||.... ++   .  |.+++..+........                      .-.....
T Consensus        35 ~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~----------------------~~~~~~~   92 (281)
T d1k32a2          35 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY----------------------FSGKSTG   92 (281)
T ss_dssp             EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC----------------------CCEEEET
T ss_pred             EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee----------------------cCCCccC
Confidence            34566677899999999999986543 22   2  4444443321111000                      0000112


Q ss_pred             CccCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC--------
Q 005277          420 HSGPVYSASFSPLGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--------  485 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~s~D------g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg--------  485 (704)
                      .........|+|+++.|+.....      ..+...+...+....   .+......+.+.+.+..++......        
T Consensus        93 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (281)
T d1k32a2          93 RRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP---LNLGPATHILFADGRRVIGRNTFELPHWKGYRG  169 (281)
T ss_dssp             TEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE---CCSCSCSEEEEETTEEEEEESCSCCTTSTTCCS
T ss_pred             ccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE---ecCCccceeeecCCCeEEEeeccccceeeeecc
Confidence            23455678999999988865332      234455554333222   1223333344443444444332211        


Q ss_pred             ---eEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECC--CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCC
Q 005277          486 ---TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD--KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR  560 (704)
Q Consensus       486 ---~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d--g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~  560 (704)
                         ....+....... .....+........+.++. .+.....+  ..|.++|+.++...+ +..+.. .....|+|||+
T Consensus       170 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~-~~~~~~SpDG~  245 (281)
T d1k32a2         170 GTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRK-HTSFTD-YYPRHLNTDGR  245 (281)
T ss_dssp             TTCCEEEEEEETTEE-EEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEE-CCCCCS-SCEEEEEESSS
T ss_pred             CCcceeeeeccccce-eeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceEE-eecCCC-cccccCcCCCC
Confidence               111222222222 2222233444455555542 22333333  357788887766544 333222 22346899999


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeee
Q 005277          561 YMASGDEDGTIMMWDLASGRCVT  583 (704)
Q Consensus       561 ~l~sg~~dg~I~iwdl~~~~~~~  583 (704)
                      .|+.. .+|.|+++|+.+++...
T Consensus       246 ~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         246 RILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             CEEEE-ETTEEEEECTTTCCEEE
T ss_pred             EEEEE-eCCEEEEEECCCCCEEE
Confidence            88764 46889999998886543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.67  E-value=0.00064  Score=68.67  Aligned_cols=151  Identities=13%  Similarity=0.110  Sum_probs=98.9

Q ss_pred             EEEEcC---CCCEEEEE-eCCCeEEEEeCCCCceeEEeec-CCcCeeEEEEcC--CCCEEEEEeCC--------------
Q 005277          426 SASFSP---LGDFILSS-SADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNP--QGHYFASSSHD--------------  484 (704)
Q Consensus       426 ~l~~sp---~~~~l~s~-s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp--~~~~l~sgs~d--------------  484 (704)
                      .+++..   ||++|+.. ..++.|.+.|+++.++.....- ....+..+...+  +-.|++.++.+              
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            555644   78888765 4788999999999988654432 334566666654  55677776652              


Q ss_pred             ----CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCC---------------------------------
Q 005277          485 ----RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK---------------------------------  527 (704)
Q Consensus       485 ----g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---------------------------------  527 (704)
                          +.+.++|.++.+....... ......+.++|+|+++++.+.+.                                 
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                2367788888776655543 24567899999999999987431                                 


Q ss_pred             -----cEEEEeCCC--C-cEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCC
Q 005277          528 -----TVRLWDVSS--G-ECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS  578 (704)
Q Consensus       528 -----~I~iwd~~~--~-~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~  578 (704)
                           .+.+.|.+.  + ..++.+.. ......+.++|||+++++++ .+.++.|+|++.
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             cEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                 223334332  1 11222211 22345789999999987765 688999999864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=0.033  Score=53.06  Aligned_cols=205  Identities=9%  Similarity=0.040  Sum_probs=130.2

Q ss_pred             CCEEEEEEcCCCCEEEEE-eCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277          352 NGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (704)
Q Consensus       352 ~~V~~~~fs~dg~~lasg-~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (704)
                      ..+.+++|.+..+.|.-. ..++.|+..+++...                            .......-...+.++++.
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~----------------------------~~~v~~~~~~~p~~iAvD   87 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE----------------------------PTTIIRQDLGSPEGIALD   87 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC----------------------------CEEEECTTCCCEEEEEEE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC----------------------------cEEEEEeccccccEEEEe
Confidence            347788998876655554 456778777776421                            111122222457888887


Q ss_pred             CCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCe--EEEEECCCCceeEEeccCCC
Q 005277          431 PLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRT--ARIWSMDRIQPLRIMAGHLS  506 (704)
Q Consensus       431 p~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~--i~lwd~~~~~~~~~~~~~~~  506 (704)
                      .-+..|+ +-...+.|.+.+++...+...+.........+++.|...+++... ..+.  |.--+++.............
T Consensus        88 ~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~  167 (263)
T d1npea_          88 HLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG  167 (263)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCS
T ss_pred             ccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeeccc
Confidence            7666665 555678999999986655444444446788999999665554433 2233  44446665554444444445


Q ss_pred             CeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277          507 DVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (704)
Q Consensus       507 ~V~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~  585 (704)
                      ....+++.+.++.|... ...+.|...|+........+.+.. ...+|++. ++....+-...+.|...|..+++.+..+
T Consensus       168 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEE
Confidence            66889998887777655 456789999987555444444433 34678775 3444444456788999999988877666


Q ss_pred             c
Q 005277          586 M  586 (704)
Q Consensus       586 ~  586 (704)
                      .
T Consensus       246 ~  246 (263)
T d1npea_         246 H  246 (263)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.60  E-value=0.0027  Score=64.25  Aligned_cols=116  Identities=9%  Similarity=0.069  Sum_probs=70.1

Q ss_pred             eEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCceeEEeec-CCcCeeEEEEcCCCCEEEEEeCC------CeEEEEECCCC
Q 005277          424 VYSASFSPLGDFILSSSAD-TTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRI  495 (704)
Q Consensus       424 V~~l~~sp~~~~l~s~s~D-g~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~l~sgs~d------g~i~lwd~~~~  495 (704)
                      ..+.++.+++.+++.|+.+ .++.+||..+..-...-.. ....-...+..++|++++.|+.+      ..+.+||..+.
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            3456788999988888655 5899999886544322111 11123456777899999998743      46889998875


Q ss_pred             ceeEEecc---------CC-----CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE
Q 005277          496 QPLRIMAG---------HL-----SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC  539 (704)
Q Consensus       496 ~~~~~~~~---------~~-----~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~  539 (704)
                      +-...-..         +.     ..-..+..-+++..+..+...+.+..+|..+...
T Consensus       158 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         158 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            43221100         00     0011122235677777777777777777766643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.044  Score=52.15  Aligned_cols=162  Identities=6%  Similarity=-0.082  Sum_probs=105.8

Q ss_pred             CccCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCc----eeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECC
Q 005277          420 HSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMD  493 (704)
Q Consensus       420 h~~~V~~l~~sp~~~~l~s~-s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~  493 (704)
                      ....+.++.|.+..+.|+-+ ...+.|.-.+++...    ....+......+.++++.+.+ +..++-...+.|.+.+++
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            34567789999888877654 456777777765322    112223333456788888744 445555677899999998


Q ss_pred             CCceeEEeccCCCCeeEEEEcCCCCEEEEEE--CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE-eCCCe
Q 005277          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGT  570 (704)
Q Consensus       494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~  570 (704)
                      .................++++|...+|+...  ..+.|...++............-.....+++.+.++.|+.+ ...+.
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~  187 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCE
Confidence            8766666666667789999999766666544  34567777775444433333334567899999987766655 55688


Q ss_pred             EEEEeCCCCee
Q 005277          571 IMMWDLASGRC  581 (704)
Q Consensus       571 I~iwdl~~~~~  581 (704)
                      |...|+.....
T Consensus       188 I~~~~~dG~~~  198 (266)
T d1ijqa1         188 ISSIDVNGGNR  198 (266)
T ss_dssp             EEEEETTSCSC
T ss_pred             EEEEECCCCCE
Confidence            99889865543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.48  E-value=0.0039  Score=62.80  Aligned_cols=188  Identities=11%  Similarity=0.040  Sum_probs=116.5

Q ss_pred             CCCCEEEEEe-CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc--CCCCEEE
Q 005277          361 QDGSLVAGGF-SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS--PLGDFIL  437 (704)
Q Consensus       361 ~dg~~lasg~-~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~  437 (704)
                      +||++|.+.. .++.|-+-|++..+.....                          .. .-...+..++..  |...|++
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi--------------------------~i-Pn~~~~HG~r~~~~p~T~YV~  149 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAIL--------------------------EI-PNAKGIHGLRPQKWPRSNYVF  149 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEE--------------------------EC-SSCCSEEEEEECCSSBCSEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEE--------------------------ec-CCCCCCceeecccCCCeEEEE
Confidence            4899888876 4788999999874432211                          11 112234444443  3445666


Q ss_pred             EEeCC------------------CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC--------------
Q 005277          438 SSSAD------------------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--------------  485 (704)
Q Consensus       438 s~s~D------------------g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg--------------  485 (704)
                      .++.+                  +.+.++|..+++......- ......+.++++|+++++.+.+.              
T Consensus       150 ~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~  228 (459)
T d1fwxa2         150 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM  228 (459)
T ss_dssp             EEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred             ccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccc
Confidence            66553                  2366788888877666553 23466899999999988876431              


Q ss_pred             -eEEEE-----------------------ECCC--C-ceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCC
Q 005277          486 -TARIW-----------------------SMDR--I-QPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG  537 (704)
Q Consensus       486 -~i~lw-----------------------d~~~--~-~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~  537 (704)
                       .+.++                       |.+.  . ..++.+. -......+..+|||+++++++ -+.++.++|++.-
T Consensus       229 D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki  307 (459)
T d1fwxa2         229 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  307 (459)
T ss_dssp             EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             eEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhh
Confidence             12333                       3322  1 1111121 112345788999999998765 5889999998631


Q ss_pred             -----------cEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277          538 -----------ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (704)
Q Consensus       538 -----------~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~  577 (704)
                                 .++..-....-.....+|+..|.-..+-.-|..|.-|++.
T Consensus       308 ~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         308 DAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             HHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             hhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence                       1122112233345677899888777777899999999985

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.052  Score=51.65  Aligned_cols=223  Identities=9%  Similarity=0.021  Sum_probs=135.5

Q ss_pred             eeCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277          348 INTHNGLNCASISQDGSLVAGGF-SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (704)
Q Consensus       348 ~~~~~~V~~~~fs~dg~~lasg~-~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (704)
                      ......+..++|++..+.|.-.. .++.|.-.+++.....                        .............+.+
T Consensus        26 ~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~------------------------~~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1          26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------SSYDTVISRDIQAPDG   81 (266)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCCCE
T ss_pred             eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC------------------------cceEEEEeCCCCCcce
Confidence            34555678899988766665543 4565665555431100                        0111112222344667


Q ss_pred             EEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCE-EEEEe-CCCeEEEEECCCCceeEEecc
Q 005277          427 ASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSS-HDRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       427 l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~-l~sgs-~dg~i~lwd~~~~~~~~~~~~  503 (704)
                      +++.+.+..|. +-...+.|.+.+++.................+++.|...+ +++.. ..+.|.-.+++..........
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~  161 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  161 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc
Confidence            88876666555 4456788999999876665556655667889999985444 44432 345677777776655555444


Q ss_pred             CCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCcEEEEeecC--CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277          504 HLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (704)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~~h--~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~  580 (704)
                      .......+++.+.++.|..+ ...+.|...|+............  .....++++. ++....+-..++.|...+..++.
T Consensus       162 ~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCc
Confidence            45667899999887766665 45688999998655443333332  2346677776 34444444577889888888887


Q ss_pred             eeeeecCCCceeeee
Q 005277          581 CVTPLMGHTSCVWTL  595 (704)
Q Consensus       581 ~~~~~~~h~~~V~sl  595 (704)
                      ....+......+..+
T Consensus       241 ~~~~~~~~~~~p~~i  255 (266)
T d1ijqa1         241 DVNLLAENLLSPEDM  255 (266)
T ss_dssp             CCEEEECSCSCCCCE
T ss_pred             ceEEEEcCCCCceEE
Confidence            666555443333333

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.21  E-value=0.098  Score=49.70  Aligned_cols=204  Identities=12%  Similarity=0.217  Sum_probs=130.3

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE
Q 005277          357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI  436 (704)
Q Consensus       357 ~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l  436 (704)
                      .-.+|..+.||.-. ...++|+|++....                            ..... ...+|.--.|-.+ +.|
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~k----------------------------lks~~-~~e~VvfWkWis~-~~L  116 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSK----------------------------MKAHT-MTDDVTFWKWISL-NTV  116 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEE----------------------------EEEEE-CSSCCCEEEESSS-SEE
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhh----------------------------hceEE-cCCCcEEEEecCC-CEE
Confidence            34567777777765 55799999986221                            11111 2245666667644 445


Q ss_pred             EEEeCCCeEEEEeCCCC-ceeEEeecCC----cCeeEEEEcCCCCEEEEEe-------CCCeEEEEECCCCceeEEeccC
Q 005277          437 LSSSADTTIRLWSTKLN-ANLVCYKGHN----YPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAGH  504 (704)
Q Consensus       437 ~s~s~Dg~I~lwd~~~~-~~~~~~~~h~----~~V~~v~~sp~~~~l~sgs-------~dg~i~lwd~~~~~~~~~~~~~  504 (704)
                      +-.+. ..|.-|+++.. .+...+..|.    ..|-.-..+++.++++..+       -.|.+.+|..++. ..+.+.||
T Consensus       117 ~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGh  194 (327)
T d1utca2         117 ALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH  194 (327)
T ss_dssp             EEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCS
T ss_pred             EEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccce
Confidence            55543 47999999643 4566666553    4577778888899877654       3478899999874 55667777


Q ss_pred             CCCeeEEEEcCC---CCEEEEEE---CCCcEEEEeCCCC---------cEEEEeecC---CCCEEEEEEecCCCEEEEEe
Q 005277          505 LSDVDCVRWHIN---CNYIATGS---SDKTVRLWDVSSG---------ECVRIFIGH---RSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       505 ~~~V~~v~~~p~---~~~l~tgs---~dg~I~iwd~~~~---------~~~~~~~~h---~~~i~~l~~spdg~~l~sg~  566 (704)
                      ......+...-+   .+.++.+.   ..+.+++.++...         +.+..+...   .+-..++..|+.-..++.-+
T Consensus       195 aa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT  274 (327)
T d1utca2         195 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT  274 (327)
T ss_dssp             EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE
T ss_pred             eeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEe
Confidence            655554444321   12333332   3367888888542         112222222   34566889998888899999


Q ss_pred             CCCeEEEEeCCCCeeeeeecCCCceee
Q 005277          567 EDGTIMMWDLASGRCVTPLMGHTSCVW  593 (704)
Q Consensus       567 ~dg~I~iwdl~~~~~~~~~~~h~~~V~  593 (704)
                      .-|.|++||+.++.++..-+--..+|.
T Consensus       275 K~G~i~lyDleTgt~i~~nRIs~~~iF  301 (327)
T d1utca2         275 KYGYIHLYDLETGTCIYMNRISGETIF  301 (327)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             cCcEEEEEEcccccEEEEeecCCCceE
Confidence            999999999999998876654455554

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.06  E-value=0.21  Score=50.77  Aligned_cols=212  Identities=14%  Similarity=0.185  Sum_probs=113.1

Q ss_pred             EEEEEEcCCCCEEEEEeC-C----CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277          354 LNCASISQDGSLVAGGFS-D----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~-d----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (704)
                      +...++|||++++|.+-+ .    ..|+++|+.++....                           ..+.  ......++
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~---------------------------~~i~--~~~~~~~~  177 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP---------------------------DVLE--RVKFSCMA  177 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE---------------------------EEEE--EECSCCEE
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecc---------------------------cccc--cccccceE
Confidence            344578999999986543 2    358999988632110                           0010  11124688


Q ss_pred             EcCCCCEEEEEeCC----------------CeEEEEeCCCCce--eEEeecCC--cCeeEEEEcCCCCEEEEEe---CCC
Q 005277          429 FSPLGDFILSSSAD----------------TTIRLWSTKLNAN--LVCYKGHN--YPVWDVQFNPQGHYFASSS---HDR  485 (704)
Q Consensus       429 ~sp~~~~l~s~s~D----------------g~I~lwd~~~~~~--~~~~~~h~--~~V~~v~~sp~~~~l~sgs---~dg  485 (704)
                      |++|++.|+-...+                ..|..|.+.+...  ...+....  ..+..+..++++++++...   .+.
T Consensus       178 W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~  257 (430)
T d1qfma1         178 WTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP  257 (430)
T ss_dssp             ECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS
T ss_pred             EcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCc
Confidence            99999987754332                2577888877543  34444433  3466778899999876543   233


Q ss_pred             eEEEE--ECCCCc--------eeEEeccCCCCeeEEEEcCCCCEEEEEE---CCCcEEEEeCCCCcE--EEE-eecCCCC
Q 005277          486 TARIW--SMDRIQ--------PLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSSGEC--VRI-FIGHRSM  549 (704)
Q Consensus       486 ~i~lw--d~~~~~--------~~~~~~~~~~~V~~v~~~p~~~~l~tgs---~dg~I~iwd~~~~~~--~~~-~~~h~~~  549 (704)
                      ...+|  ++....        ...........+.-+. +.++.+++...   .++.|...++.....  ... +..+...
T Consensus       258 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~  336 (430)
T d1qfma1         258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD  336 (430)
T ss_dssp             CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSC
T ss_pred             cEEEEEeeCCCcccccccccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcc
Confidence            44444  443211        1222332223333222 23333333332   346677777764321  223 3334455


Q ss_pred             EEEEEEecCCCEEEEE-eCCC--eEEEEeCCCCeeeeeecCCCceeeee
Q 005277          550 ILSLAMSPDGRYMASG-DEDG--TIMMWDLASGRCVTPLMGHTSCVWTL  595 (704)
Q Consensus       550 i~~l~~spdg~~l~sg-~~dg--~I~iwdl~~~~~~~~~~~h~~~V~sl  595 (704)
                      +..-.++..+.+|+.. -.++  .|+++++.++..........+.|..+
T Consensus       337 ~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~  385 (430)
T d1qfma1         337 VLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGY  385 (430)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEE
T ss_pred             eeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeec
Confidence            5544555555566554 3554  58889998877655444444444433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.75  E-value=0.051  Score=54.29  Aligned_cols=157  Identities=11%  Similarity=0.055  Sum_probs=94.1

Q ss_pred             EEEEEcCCCCEEEEEeCC-----C------eEEEEeCCCCcee--EEe-ecCCcCeeEEEEcCCCCEEEEEeCC-CeEEE
Q 005277          425 YSASFSPLGDFILSSSAD-----T------TIRLWSTKLNANL--VCY-KGHNYPVWDVQFNPQGHYFASSSHD-RTARI  489 (704)
Q Consensus       425 ~~l~~sp~~~~l~s~s~D-----g------~I~lwd~~~~~~~--~~~-~~h~~~V~~v~~sp~~~~l~sgs~d-g~i~l  489 (704)
                      .......+++.++.|+.+     +      .+.+||..+++-.  ... ..|........+.++|.+++.|+.+ ..+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            334445577877777642     1      3779999876532  222 2233334567888999999988755 68999


Q ss_pred             EECCCCceeEEecc-CCCCeeEEEEcCCCCEEEEEECC------CcEEEEeCCCCcEEEEeec---------CC-----C
Q 005277          490 WSMDRIQPLRIMAG-HLSDVDCVRWHINCNYIATGSSD------KTVRLWDVSSGECVRIFIG---------HR-----S  548 (704)
Q Consensus       490 wd~~~~~~~~~~~~-~~~~V~~v~~~p~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~---------h~-----~  548 (704)
                      ||..+..-...-.. ....-.+++..+++++++.|+.+      ..+.+||..+..-...-..         +.     .
T Consensus       103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  182 (387)
T d1k3ia3         103 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  182 (387)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             ecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeecc
Confidence            99887554322111 11123456667899999998753      3689999987753321100         00     0


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (704)
Q Consensus       549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~  581 (704)
                      .-..+...++|+.++.++.++.+.++|..+...
T Consensus       183 ~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         183 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             ceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            111123345677777777777777777766543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.66  E-value=0.093  Score=55.83  Aligned_cols=101  Identities=10%  Similarity=-0.015  Sum_probs=66.7

Q ss_pred             CCeEEEEeCCCCceeEEeecCC-------------------------------------cCee-EEEEcCCCCEEEEEeC
Q 005277          442 DTTIRLWSTKLNANLVCYKGHN-------------------------------------YPVW-DVQFNPQGHYFASSSH  483 (704)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~-------------------------------------~~V~-~v~~sp~~~~l~sgs~  483 (704)
                      +|.|+-+|+.+++.+..+....                                     ..+| ..++.+....++.+..
T Consensus       175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg  254 (571)
T d2ad6a1         175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecc
Confidence            6789999999999988764221                                     1232 2455666666555543


Q ss_pred             ----------------CCeEEEEECCCCceeEEeccCCCCeeE---------EEEcCCCC---EEEEEECCCcEEEEeCC
Q 005277          484 ----------------DRTARIWSMDRIQPLRIMAGHLSDVDC---------VRWHINCN---YIATGSSDKTVRLWDVS  535 (704)
Q Consensus       484 ----------------dg~i~lwd~~~~~~~~~~~~~~~~V~~---------v~~~p~~~---~l~tgs~dg~I~iwd~~  535 (704)
                                      ...+...|.++++.+..+.....++..         .....+++   .++.++.+|.++++|..
T Consensus       255 ~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~  334 (571)
T d2ad6a1         255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE  334 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred             cccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecC
Confidence                            356778899999988877744333221         11222443   46778899999999999


Q ss_pred             CCcEEEE
Q 005277          536 SGECVRI  542 (704)
Q Consensus       536 ~~~~~~~  542 (704)
                      +|+.+..
T Consensus       335 tG~~i~~  341 (571)
T d2ad6a1         335 NGNLIVA  341 (571)
T ss_dssp             TCCEEEE
T ss_pred             CCcEeee
Confidence            9988753

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.35  E-value=0.48  Score=50.07  Aligned_cols=205  Identities=10%  Similarity=0.034  Sum_probs=112.6

Q ss_pred             CCeEEEEeCCCCceeEEeecCC-------------------------------cCee-EEEEcCCCCEEEEEeC------
Q 005277          442 DTTIRLWSTKLNANLVCYKGHN-------------------------------YPVW-DVQFNPQGHYFASSSH------  483 (704)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~-------------------------------~~V~-~v~~sp~~~~l~sgs~------  483 (704)
                      .|.|+.+|..+++.+..+....                               ..+| ..++.+....++.+..      
T Consensus       189 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~  268 (573)
T d1kb0a2         189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (573)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             cceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCcccc
Confidence            4789999999999887754211                               1222 2455565555544321      


Q ss_pred             -------------CCeEEEEECCCCceeEEeccCCCCee---------EEEEcCCC---CEEEEEECCCcEEEEeCCCCc
Q 005277          484 -------------DRTARIWSMDRIQPLRIMAGHLSDVD---------CVRWHINC---NYIATGSSDKTVRLWDVSSGE  538 (704)
Q Consensus       484 -------------dg~i~lwd~~~~~~~~~~~~~~~~V~---------~v~~~p~~---~~l~tgs~dg~I~iwd~~~~~  538 (704)
                                   ...+.-.|.++++....++....++.         ......++   ..++.++.+|.+.++|..+|+
T Consensus       269 ~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe  348 (573)
T d1kb0a2         269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (573)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             ccccccccccccccceEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccc
Confidence                         12466677777777666553222221         11222233   456778899999999999999


Q ss_pred             EEEEeecCCC-----------------------------------CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeee
Q 005277          539 CVRIFIGHRS-----------------------------------MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (704)
Q Consensus       539 ~~~~~~~h~~-----------------------------------~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~  583 (704)
                      .+........                                   .-..++++|+...++....+....++.....+...
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~  428 (573)
T d1kb0a2         349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ  428 (573)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred             ccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeeccccccccc
Confidence            8764421100                                   01134788887778777766666665544322111


Q ss_pred             eecCC----------------------CceeeeeeeeeeehccccccccccccccceeeeeeeEE---eecccCCCCCEE
Q 005277          584 PLMGH----------------------TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTII---YFGCASCEGSLL  638 (704)
Q Consensus       584 ~~~~h----------------------~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~g~~l  638 (704)
                      ...++                      -+.+.++..                 .++...+.....   ....++..|.+|
T Consensus       429 ~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~-----------------~tGk~~W~~~~~~p~~gg~lstagglV  491 (573)
T d1kb0a2         429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP-----------------VAQKAAWSVEHVSPWNGGTLTTAGNVV  491 (573)
T ss_dssp             CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET-----------------TTTEEEEEEEESSSCCCCEEEETTTEE
T ss_pred             CCCCccccccccccccccccCCCCCCCcccEEEeCC-----------------CCCceEeeecCCCCCCCceEEEcCCEE
Confidence            11100                      011111110                 111111111110   011124467899


Q ss_pred             EEEeCCCcEEEEeCCCCcccccccc
Q 005277          639 ASGSADCTVKLWDVTTSTKVLKTEE  663 (704)
Q Consensus       639 asgs~Dg~V~iWd~~~~~~~~~~~~  663 (704)
                      ++|+.||.++.+|..+++.+.++..
T Consensus       492 F~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         492 FQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEECCCCeEEEEECCCCcEeEEEEC
Confidence            9999999999999999998866543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.22  E-value=0.2  Score=53.44  Aligned_cols=101  Identities=10%  Similarity=-0.012  Sum_probs=65.5

Q ss_pred             CCeEEEEeCCCCceeEEeecCC-------------------------------------cCee-EEEEcCCCCEEEEEeC
Q 005277          442 DTTIRLWSTKLNANLVCYKGHN-------------------------------------YPVW-DVQFNPQGHYFASSSH  483 (704)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~-------------------------------------~~V~-~v~~sp~~~~l~sgs~  483 (704)
                      .|.|+-+|..+++.+..+....                                     ..+| .+++.+...++..+..
T Consensus       181 ~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg  260 (596)
T d1w6sa_         181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (596)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccc
Confidence            4889999999999988764211                                     1122 3455666666555532


Q ss_pred             ----------------CCeEEEEECCCCceeEEeccCCCCee---------EEEE-cCCC---CEEEEEECCCcEEEEeC
Q 005277          484 ----------------DRTARIWSMDRIQPLRIMAGHLSDVD---------CVRW-HINC---NYIATGSSDKTVRLWDV  534 (704)
Q Consensus       484 ----------------dg~i~lwd~~~~~~~~~~~~~~~~V~---------~v~~-~p~~---~~l~tgs~dg~I~iwd~  534 (704)
                                      ...+.-.|.++++.+..++....++.         .+.. ..++   +.++.+..+|.+.++|.
T Consensus       261 ~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr  340 (596)
T d1w6sa_         261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (596)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecC
Confidence                            34577889999998877763222211         1111 1233   46777889999999999


Q ss_pred             CCCcEEEE
Q 005277          535 SSGECVRI  542 (704)
Q Consensus       535 ~~~~~~~~  542 (704)
                      .+|+.+..
T Consensus       341 ~tG~~i~~  348 (596)
T d1w6sa_         341 TDGALVSA  348 (596)
T ss_dssp             TTCCEEEE
T ss_pred             CCCceeee
Confidence            99998764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.96  E-value=0.43  Score=50.26  Aligned_cols=102  Identities=8%  Similarity=0.035  Sum_probs=64.8

Q ss_pred             CCeEEEEeCCCCceeEEeecC------------------------------CcCee-EEEEcCCCCEEEEEeC-------
Q 005277          442 DTTIRLWSTKLNANLVCYKGH------------------------------NYPVW-DVQFNPQGHYFASSSH-------  483 (704)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h------------------------------~~~V~-~v~~sp~~~~l~sgs~-------  483 (704)
                      .|.|.-+|..+++.+..+..-                              ...+| .+++.+...++..+..       
T Consensus       177 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~  256 (560)
T d1kv9a2         177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (560)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             cceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCccccc
Confidence            467999999999988776421                              11222 2456666665554421       


Q ss_pred             ------------CCeEEEEECCCCceeEEeccCCCCeeE---------EEEcCCC---CEEEEEECCCcEEEEeCCCCcE
Q 005277          484 ------------DRTARIWSMDRIQPLRIMAGHLSDVDC---------VRWHINC---NYIATGSSDKTVRLWDVSSGEC  539 (704)
Q Consensus       484 ------------dg~i~lwd~~~~~~~~~~~~~~~~V~~---------v~~~p~~---~~l~tgs~dg~I~iwd~~~~~~  539 (704)
                                  ...|.-.|.++++....++....++..         +....++   ..++.++.+|.+.++|..+|+.
T Consensus       257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~  336 (560)
T d1kv9a2         257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (560)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence                        345777788898887776643333321         1122233   3567788899999999999998


Q ss_pred             EEEe
Q 005277          540 VRIF  543 (704)
Q Consensus       540 ~~~~  543 (704)
                      +...
T Consensus       337 i~~~  340 (560)
T d1kv9a2         337 ISAE  340 (560)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            7644

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.49  E-value=1.5  Score=44.05  Aligned_cols=102  Identities=11%  Similarity=0.009  Sum_probs=65.6

Q ss_pred             cCeEEEEEcCCCCEEE-EEeCC----CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC------------
Q 005277          422 GPVYSASFSPLGDFIL-SSSAD----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD------------  484 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~-s~s~D----g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d------------  484 (704)
                      -.+..+++||++++++ +-+.+    .+|++.|+.+++.+...-. ......+.|++++..|+....+            
T Consensus       125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             ceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence            3455678899999887 33333    4699999999987642211 1223578999999987755432            


Q ss_pred             ----CeEEEEECCCCce--eEEeccCC--CCeeEEEEcCCCCEEEEEE
Q 005277          485 ----RTARIWSMDRIQP--LRIMAGHL--SDVDCVRWHINCNYIATGS  524 (704)
Q Consensus       485 ----g~i~lwd~~~~~~--~~~~~~~~--~~V~~v~~~p~~~~l~tgs  524 (704)
                          ..+..|.+.+...  ...+....  ..+..+..++++++++...
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence                2577777766532  34444333  2355677889999987543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.25  E-value=1.3  Score=41.82  Aligned_cols=239  Identities=13%  Similarity=0.177  Sum_probs=134.7

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEeccCC
Q 005277          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHL  505 (704)
Q Consensus       427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-~~~~~~~~~~~  505 (704)
                      .-.+|..+.|+.-+ ..++.++|+++.+.+..+.-. .+|.--.|-.+. .|+..+ +..|+-|+++. ..|.+.+..|.
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~  143 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS  143 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhcc
Confidence            44567777776555 458999999999998888754 467666776444 444443 46899999954 35777777654


Q ss_pred             ----CCeeEEEEcCCCCEEEEEE-------CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC---CEEEE---EeCC
Q 005277          506 ----SDVDCVRWHINCNYIATGS-------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMAS---GDED  568 (704)
Q Consensus       506 ----~~V~~v~~~p~~~~l~tgs-------~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg---~~l~s---g~~d  568 (704)
                          ..|-.-..+++.++++..+       -.|.+.+|....+ ..+.+.||.+.-..+.+.-+.   ..++.   +...
T Consensus       144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~  222 (327)
T d1utca2         144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  222 (327)
T ss_dssp             GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred             cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCC
Confidence                3566677788899887643       2367889998654 344566775544333332111   12222   2233


Q ss_pred             CeEEEEeCCCCee-eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcE
Q 005277          569 GTIMMWDLASGRC-VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV  647 (704)
Q Consensus       569 g~I~iwdl~~~~~-~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V  647 (704)
                      +.++|.++..... -..+   ......+-|.+             .....+.+       ..-+|+.-.++..-+.-|.|
T Consensus       223 ~kLhIiEig~~~~g~~~f---~kk~vdi~fpp-------------ea~~DFPv-------amqvs~kygiiyviTK~G~i  279 (327)
T d1utca2         223 GKLHIIEVGTPPTGNQPF---PKKAVDVFFPP-------------EAQNDFPV-------AMQISEKHDVVFLITKYGYI  279 (327)
T ss_dssp             EEEEEEECSCCCTTCCCC---CCEEEECCCCT-------------TCTTCCEE-------EEEEETTTTEEEEEETTSEE
T ss_pred             cEEEEEEcCCCccCCCCC---cceeEEEECCc-------------cccCCcEE-------EEEeeccCCEEEEEecCcEE
Confidence            6888888765311 1111   11111121100             00000000       00116667788889999999


Q ss_pred             EEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEe
Q 005277          648 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG  698 (704)
Q Consensus       648 ~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~g  698 (704)
                      ++||+.++..+....-....   -.+.......+.|.+  .+++|+.|.+.
T Consensus       280 ~lyDleTgt~i~~nRIs~~~---iF~~a~~~~~~Gi~~--VNr~GqVl~vs  325 (327)
T d1utca2         280 HLYDLETGTCIYMNRISGET---IFVTAPHEATAGIIG--VNRKGQVLSVC  325 (327)
T ss_dssp             EEEETTTCCEEEEEECCSSC---EEEEEEETTTTEEEE--EETTSEEEEEE
T ss_pred             EEEEcccccEEEEeecCCCc---eEEeccCCCCceEEE--ECCCCeEEEEE
Confidence            99999999875432211110   011222233344443  34777776653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.13  E-value=0.33  Score=51.18  Aligned_cols=144  Identities=9%  Similarity=0.094  Sum_probs=94.4

Q ss_pred             CeEEEEeCCCCceeEEeecCCcCeeEE---------EEcCCC---CEEEEEeCCCeEEEEECCCCceeEEeccCC-----
Q 005277          443 TTIRLWSTKLNANLVCYKGHNYPVWDV---------QFNPQG---HYFASSSHDRTARIWSMDRIQPLRIMAGHL-----  505 (704)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~v---------~~sp~~---~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~-----  505 (704)
                      ..|...|+++++....++.....++..         ....++   ..++.++.+|.+.++|-.+++++.......     
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            457777899998887776544444432         122233   356778899999999999988765432110     


Q ss_pred             -----------------------------C--CeeEEEEcCCCCEEEEEEC-----------------------------
Q 005277          506 -----------------------------S--DVDCVRWHINCNYIATGSS-----------------------------  525 (704)
Q Consensus       506 -----------------------------~--~V~~v~~~p~~~~l~tgs~-----------------------------  525 (704)
                                                   +  .-...+++|+...+++...                             
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                         0  0113556677666665432                             


Q ss_pred             -------CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC
Q 005277          526 -------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG  587 (704)
Q Consensus       526 -------dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~  587 (704)
                             .|.|.-||+.+|+.+..+... .+..+-.++-.|.++++|+.||.++.+|..+|+.+-++..
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence                   246788999999988766422 2222222333577888999999999999999999977753

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.08  E-value=0.44  Score=50.31  Aligned_cols=143  Identities=10%  Similarity=0.063  Sum_probs=92.5

Q ss_pred             CeEEEEeCCCCceeEEeecCCcCeeEE---------EEcCCCC---EEEEEeCCCeEEEEECCCCceeEEeccCC-----
Q 005277          443 TTIRLWSTKLNANLVCYKGHNYPVWDV---------QFNPQGH---YFASSSHDRTARIWSMDRIQPLRIMAGHL-----  505 (704)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~v---------~~sp~~~---~l~sgs~dg~i~lwd~~~~~~~~~~~~~~-----  505 (704)
                      ..+...|.++++.+..++.+...+|+.         ....++.   .++.++.+|.+.++|.++++++.......     
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~  351 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence            467788999999988887544444432         1222343   46778899999999999988764321100     


Q ss_pred             --------------------------------CC--eeEEEEcCCCCEEEEEECC-------------------------
Q 005277          506 --------------------------------SD--VDCVRWHINCNYIATGSSD-------------------------  526 (704)
Q Consensus       506 --------------------------------~~--V~~v~~~p~~~~l~tgs~d-------------------------  526 (704)
                                                      +.  -...+++|+...+++...+                         
T Consensus       352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (571)
T d2ad6a1         352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence                                            00  0125667776666654322                         


Q ss_pred             ------------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277          527 ------------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (704)
Q Consensus       527 ------------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~  586 (704)
                                  |.|.-+|+.+|+.+....... +..+-..+-.|.++++|+.||.++.+|.++|+.+-++.
T Consensus       432 ~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccCCcccCCcccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence                        457788888898887654221 11111122356678889999999999999999997774

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.05  E-value=0.42  Score=50.73  Aligned_cols=199  Identities=15%  Similarity=0.069  Sum_probs=115.9

Q ss_pred             EEEeCCCeEEEEeC-CCCceeEEeecCCc-----------CeeEEEEcCC----CCEEEEEeCCCeEEEEECCCCceeEE
Q 005277          437 LSSSADTTIRLWST-KLNANLVCYKGHNY-----------PVWDVQFNPQ----GHYFASSSHDRTARIWSMDRIQPLRI  500 (704)
Q Consensus       437 ~s~s~Dg~I~lwd~-~~~~~~~~~~~h~~-----------~V~~v~~sp~----~~~l~sgs~dg~i~lwd~~~~~~~~~  500 (704)
                      ++++.++.|...|. .+++.+..+.....           .-+.+++.++    +..++.++.|+.|.-.|.++++.+..
T Consensus        67 ~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~  146 (596)
T d1w6sa_          67 IHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWK  146 (596)
T ss_dssp             EECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCceecc
Confidence            34444566777775 46777776642110           1133555432    34688899999999999999999887


Q ss_pred             eccCCCCe-eEEEEcC--CCCEEEEEEC------CCcEEEEeCCCCcEEEEeecCC------------------------
Q 005277          501 MAGHLSDV-DCVRWHI--NCNYIATGSS------DKTVRLWDVSSGECVRIFIGHR------------------------  547 (704)
Q Consensus       501 ~~~~~~~V-~~v~~~p--~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~------------------------  547 (704)
                      +....... ..+.-.|  -++.+++|..      .|.|+-+|+.+|+.+..+....                        
T Consensus       147 ~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~  226 (596)
T d1w6sa_         147 VENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLG  226 (596)
T ss_dssp             EECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHH
T ss_pred             ccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccc
Confidence            75221110 0111111  1345666543      4889999999999998764211                        


Q ss_pred             --------------CCEEEEEEecCCCEEEEEeC----------------CCeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277          548 --------------SMILSLAMSPDGRYMASGDE----------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAY  597 (704)
Q Consensus       548 --------------~~i~~l~~spdg~~l~sg~~----------------dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~  597 (704)
                                    ..-..+++.+....++.+..                ...|.-.|+.+|+.+-.++.....++....
T Consensus       227 ~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~  306 (596)
T d1w6sa_         227 TGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAG  306 (596)
T ss_dssp             HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred             cccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCcc
Confidence                          01223466666666665543                235777888898887766543333333222


Q ss_pred             eeeehccccccccccccccceeeeeeeEEeecccCCCC---CEEEEEeCCCcEEEEeCCCCcccc
Q 005277          598 RFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG---SLLASGSADCTVKLWDVTTSTKVL  659 (704)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g---~~lasgs~Dg~V~iWd~~~~~~~~  659 (704)
                      .....                        ...+...+|   ..++.++.+|.+.++|..+++.+.
T Consensus       307 ~~~~~------------------------l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~  347 (596)
T d1w6sa_         307 VNVMM------------------------LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (596)
T ss_dssp             CCCCE------------------------EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cccee------------------------eeeccccccccccceeccccccceeeecCCCCceee
Confidence            00000                        000002233   467888899999999999987664

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.97  E-value=0.66  Score=45.87  Aligned_cols=186  Identities=11%  Similarity=-0.011  Sum_probs=104.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (704)
Q Consensus       354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (704)
                      .+.+++++...++++|+.++ +.|-.+.........  ....             ........    -..|..++|+.  
T Consensus        39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~--~~~~-------------~~~~~~~~----ip~v~~vafs~--   96 (381)
T d1xipa_          39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS--DSTP-------------LTFKWEKE----IPDVIFVCFHG--   96 (381)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS--SSCC-------------CCCSEEEE----CTTEEEEEEET--
T ss_pred             cceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhc--cCCC-------------CcceeccC----CCCeEEEEeeC--
Confidence            34567788777888888776 557765432111000  0000             00000011    12588899974  


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-----cCCCCe
Q 005277          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-----GHLSDV  508 (704)
Q Consensus       434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~-----~~~~~V  508 (704)
                      ..|+... ++.+..++...-........-..++.++.++|.  .++....+|.+.++++..+.......     .-.+.+
T Consensus        97 d~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~  173 (381)
T d1xipa_          97 DQVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ  173 (381)
T ss_dssp             TEEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSE
T ss_pred             CEEEEEe-CCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCc
Confidence            4455544 456888887765555555445667888888775  56777788999999998876433321     122557


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEE-eCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277          509 DCVRWHINCNYIATGSSDKTVRLW-DVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (704)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iw-d~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg  565 (704)
                      .|++|++.|..++++..++ ..+- ++.....+.........|.+|.|-.+..++++-
T Consensus       174 ~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         174 LAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            7777777777777764321 1111 111111000001234468899998776666654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.92  E-value=1.6  Score=42.51  Aligned_cols=143  Identities=15%  Similarity=0.247  Sum_probs=90.3

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEc------CCCCEEEEEe--CC--CeEEEEECCC-CceeE
Q 005277          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN------PQGHYFASSS--HD--RTARIWSMDR-IQPLR  499 (704)
Q Consensus       431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~s------p~~~~l~sgs--~d--g~i~lwd~~~-~~~~~  499 (704)
                      |+..+++.....+-|.+||+. |+.+..+.  .+.+..|..-      ....-+++++  .+  .+|.+|.++. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            345677777777779999996 77777664  3455555433      2222355555  22  3688888753 22333


Q ss_pred             EeccC-------CCCeeEEEE--cCC-CC-EEEEEECCCcEEEEeCC---CC----cEEEEeecCCCCEEEEEEecCCCE
Q 005277          500 IMAGH-------LSDVDCVRW--HIN-CN-YIATGSSDKTVRLWDVS---SG----ECVRIFIGHRSMILSLAMSPDGRY  561 (704)
Q Consensus       500 ~~~~~-------~~~V~~v~~--~p~-~~-~l~tgs~dg~I~iwd~~---~~----~~~~~~~~h~~~i~~l~~spdg~~  561 (704)
                      .+...       ...+..+|+  +|. +. ++++...+|.+..|.+.   .+    +.++.+. -...+..|.+.+....
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGS  193 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCc
Confidence            33221       234667776  554 44 56667788999888763   23    3455664 3457899999999899


Q ss_pred             EEEEeCCCeEEEEeCC
Q 005277          562 MASGDEDGTIMMWDLA  577 (704)
Q Consensus       562 l~sg~~dg~I~iwdl~  577 (704)
                      |+.+-++.-|+.+++.
T Consensus       194 LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             EEEEETTTEEEEEESS
T ss_pred             EEEecCccceEEEEec
Confidence            9999888767666654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.59  E-value=0.33  Score=51.43  Aligned_cols=143  Identities=9%  Similarity=0.071  Sum_probs=91.0

Q ss_pred             eEEEEeCCCCceeEEeecCCcCeeEEE---------EcCCC---CEEEEEeCCCeEEEEECCCCceeEEeccCCC-----
Q 005277          444 TIRLWSTKLNANLVCYKGHNYPVWDVQ---------FNPQG---HYFASSSHDRTARIWSMDRIQPLRIMAGHLS-----  506 (704)
Q Consensus       444 ~I~lwd~~~~~~~~~~~~h~~~V~~v~---------~sp~~---~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~-----  506 (704)
                      .|...|.++++....++.....++...         ...++   ..++.++.+|.+.++|..+++.+........     
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~  363 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence            466677777877766654333333222         12223   3577788999999999999887654321100     


Q ss_pred             ------------------------------CeeEEEEcCCCCEEEEEECC------------------------------
Q 005277          507 ------------------------------DVDCVRWHINCNYIATGSSD------------------------------  526 (704)
Q Consensus       507 ------------------------------~V~~v~~~p~~~~l~tgs~d------------------------------  526 (704)
                                                    .-..++++|+..++++...+                              
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  443 (573)
T d1kb0a2         364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (573)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccc
Confidence                                          01124677776666653322                              


Q ss_pred             -------------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC
Q 005277          527 -------------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG  587 (704)
Q Consensus       527 -------------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~  587 (704)
                                   |.+.-||+.+|+.+..+.... +...=..+-.|.++++|+.||.++.+|..+|+.+-++..
T Consensus       444 ~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cccccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence                         357778888888887665332 111112333678888999999999999999999977753

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.91  Score=42.34  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=15.5

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCC
Q 005277          634 EGSLLASGSADC-----TVKLWDVTTS  655 (704)
Q Consensus       634 ~g~~lasgs~Dg-----~V~iWd~~~~  655 (704)
                      ++++++.||.++     .|.+||+.+.
T Consensus       242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCEEEEEecCCCCeecceEEEEECCCC
Confidence            577788887654     3778888764

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.02  E-value=2.9  Score=40.48  Aligned_cols=141  Identities=13%  Similarity=0.206  Sum_probs=87.6

Q ss_pred             eEEEEeCCC-CceeEEeecC-------CcCeeEEEE--cCC-CC-EEEEEeCCCeEEEEECC---CC----ceeEEeccC
Q 005277          444 TIRLWSTKL-NANLVCYKGH-------NYPVWDVQF--NPQ-GH-YFASSSHDRTARIWSMD---RI----QPLRIMAGH  504 (704)
Q Consensus       444 ~I~lwd~~~-~~~~~~~~~h-------~~~V~~v~~--sp~-~~-~l~sgs~dg~i~lwd~~---~~----~~~~~~~~~  504 (704)
                      +|.+|.+.. ...+..+...       ...+..+|+  ++. |. ++++...+|.+..|.+.   .+    +.++.+. -
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~  178 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-M  178 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-C
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-C
Confidence            688888763 2233333221       123667777  663 54 56667788999888763   22    2445554 3


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-----CcEEEEeec--CCCCEEEEEEec----CCCEEEEEeCCCeEEE
Q 005277          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-----GECVRIFIG--HRSMILSLAMSP----DGRYMASGDEDGTIMM  573 (704)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-----~~~~~~~~~--h~~~i~~l~~sp----dg~~l~sg~~dg~I~i  573 (704)
                      ...+..|.+.+....|+.+-.+..|+.++...     +..+....+  ....+-.|+.-.    +|-+|+|.-.+++..+
T Consensus       179 ~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v  258 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAI  258 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence            46788999999999999998887776666541     222222222  345677777653    3445666667889999


Q ss_pred             EeCCCC-eeeeee
Q 005277          574 WDLASG-RCVTPL  585 (704)
Q Consensus       574 wdl~~~-~~~~~~  585 (704)
                      ||..+. +.+..+
T Consensus       259 ydr~~~~~~~g~F  271 (353)
T d1h6la_         259 YERQGQNKYVADF  271 (353)
T ss_dssp             EESSTTCCEEEEE
T ss_pred             EecCCCccccceE
Confidence            998763 455444

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.95  E-value=3.2  Score=40.66  Aligned_cols=137  Identities=9%  Similarity=-0.032  Sum_probs=87.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCC-----------CCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277          423 PVYSASFSPLGDFILSSSADTTIRLWSTK-----------LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~-----------~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd  491 (704)
                      ...-++.++...+++.|+.++ ++|-.+.           ........  .-..|..++|+.+  .++.. .++.+..++
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            355678887777888888875 5666532           11111111  1235888999744  45554 446688888


Q ss_pred             CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-----cCCCCEEEEEEecCCCEEEEEe
Q 005277          492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-----GHRSMILSLAMSPDGRYMASGD  566 (704)
Q Consensus       492 ~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-----~h~~~i~~l~~spdg~~l~sg~  566 (704)
                      ............-..++..+.++|+  .++....+|.+.++++..++......     .-.+.+.+++|++.|..++++.
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         112 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             eeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            8765544444444566778887764  56777789999999999886543221     1235678888888888887764


Q ss_pred             C
Q 005277          567 E  567 (704)
Q Consensus       567 ~  567 (704)
                      .
T Consensus       190 g  190 (381)
T d1xipa_         190 N  190 (381)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.93  E-value=1  Score=47.47  Aligned_cols=60  Identities=22%  Similarity=0.287  Sum_probs=45.2

Q ss_pred             CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC
Q 005277          527 KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG  587 (704)
Q Consensus       527 g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~  587 (704)
                      |.|.-+|+.+|+.+..+..+. ++.+-..+..|..+++|+.||.++.+|..+|+.+-++..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            568888999999888775432 222222344677888999999999999999999977753

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.79  E-value=0.59  Score=49.44  Aligned_cols=79  Identities=18%  Similarity=0.177  Sum_probs=54.0

Q ss_pred             CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC-CEEEEEEecCCC-EE
Q 005277          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGR-YM  562 (704)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~-~l  562 (704)
                      |.+.-+|+.+++.+..+..+. ++..-.....+.++++|+.||.++-+|..+|+.+..+.-... .-.-+.|..+|+ |+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            567778888888777665332 222222334677888999999999999999999998864322 112256677885 55


Q ss_pred             EE
Q 005277          563 AS  564 (704)
Q Consensus       563 ~s  564 (704)
                      ++
T Consensus       545 ~i  546 (582)
T d1flga_         545 GV  546 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.14  E-value=0.039  Score=40.56  Aligned_cols=30  Identities=23%  Similarity=0.427  Sum_probs=27.5

Q ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Q 005277            3 ELQVVEFVATYLKKKGFSEAENALQAEIQR   32 (704)
Q Consensus         3 ~~~~~~~v~~yl~~~~~~~~~~~~~~e~~~   32 (704)
                      .++|++++++||.++||.++-++|+.|+..
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l   36 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAEL   36 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCC
Confidence            478999999999999999999999999754

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=2.2  Score=39.47  Aligned_cols=13  Identities=8%  Similarity=0.327  Sum_probs=9.9

Q ss_pred             CCcEEEEeecCCC
Q 005277          691 RNLLFAAGALSKT  703 (704)
Q Consensus       691 ~g~~La~gs~dgt  703 (704)
                      ++++++.|+.+++
T Consensus       242 ~~~l~v~GG~~~~  254 (288)
T d1zgka1         242 QGRIYVLGGYDGH  254 (288)
T ss_dssp             TTEEEEECCBCSS
T ss_pred             CCEEEEEecCCCC
Confidence            6788888887654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.66  E-value=4.7  Score=38.80  Aligned_cols=157  Identities=14%  Similarity=0.136  Sum_probs=90.2

Q ss_pred             CeEEEEEcCCCCEEEEEeC------------CCeEEEEeCCCCceeE-Eee--cC-----CcCeeEEEE--cCCCC-EEE
Q 005277          423 PVYSASFSPLGDFILSSSA------------DTTIRLWSTKLNANLV-CYK--GH-----NYPVWDVQF--NPQGH-YFA  479 (704)
Q Consensus       423 ~V~~l~~sp~~~~l~s~s~------------Dg~I~lwd~~~~~~~~-~~~--~h-----~~~V~~v~~--sp~~~-~l~  479 (704)
                      ..-.|...|+|..+++++.            .|.|.++|+.+..... .+.  +.     ......+..  .++|. +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            3456888898887776542            4889999987654322 221  11     012233433  34554 344


Q ss_pred             EEe---CCCeEEEEECCCCce-e---EEec-cCCCCeeEEEEcCCCCEEEEEEC---------------CCcEEEEeCCC
Q 005277          480 SSS---HDRTARIWSMDRIQP-L---RIMA-GHLSDVDCVRWHINCNYIATGSS---------------DKTVRLWDVSS  536 (704)
Q Consensus       480 sgs---~dg~i~lwd~~~~~~-~---~~~~-~~~~~V~~v~~~p~~~~l~tgs~---------------dg~I~iwd~~~  536 (704)
                      +..   ...+|-+|++..... +   ..+. ......+.+.+..++.+++|-..               -++..+|....
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            443   345677887754332 1   2222 12244678888888888887321               12344454444


Q ss_pred             CcEEEEeecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEeCCCCe
Q 005277          537 GECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGR  580 (704)
Q Consensus       537 ~~~~~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iwdl~~~~  580 (704)
                      +...... ..-...+.|+++||+++|+++ +..+.|++|++....
T Consensus       196 ~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         196 NDVRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             SCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CceEEEc-CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            4433222 333567899999999877654 567889999987543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.74  E-value=9.1  Score=38.23  Aligned_cols=37  Identities=5%  Similarity=-0.022  Sum_probs=28.4

Q ss_pred             EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 005277          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK  382 (704)
Q Consensus       346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~  382 (704)
                      .+...-+.-++++|.|||+++++--..|.|++++..+
T Consensus        21 ~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~   57 (450)
T d1crua_          21 VILSNLNKPHALLWGPDNQIWLTERATGKILRVNPES   57 (450)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             EEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCC
Confidence            3444445678999999999888775689999887655

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=88.60  E-value=11  Score=36.04  Aligned_cols=134  Identities=9%  Similarity=0.165  Sum_probs=77.7

Q ss_pred             cCCCC-EEEEE---eCCCeEEEEeCCCCcee----EEee-cCCcCeeEEEEcCCCCEEEEEeC---------------CC
Q 005277          430 SPLGD-FILSS---SADTTIRLWSTKLNANL----VCYK-GHNYPVWDVQFNPQGHYFASSSH---------------DR  485 (704)
Q Consensus       430 sp~~~-~l~s~---s~Dg~I~lwd~~~~~~~----~~~~-~h~~~V~~v~~sp~~~~l~sgs~---------------dg  485 (704)
                      .+++. +|++.   ....+|.+|++......    .++. .......++.+..++.+++|-..               -+
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence            45565 34444   24567888887644322    1222 12345789999999988887321               12


Q ss_pred             eEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEE--eecCCCCEEEEEEec-CCCE
Q 005277          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRI--FIGHRSMILSLAMSP-DGRY  561 (704)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~--~~~h~~~i~~l~~sp-dg~~  561 (704)
                      +..+|..+.... ..........+.|+++|++++|+++. ..+.|+.|++.....+..  ...-.+..-.+.+.+ +|.+
T Consensus       187 ~g~v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~l  265 (340)
T d1v04a_         187 WSFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL  265 (340)
T ss_dssp             CEEEEEECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred             ceeEEEEcCCce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEE
Confidence            334444444333 33333446688999999998887664 578899999874432221  112334566777776 4444


Q ss_pred             EEE
Q 005277          562 MAS  564 (704)
Q Consensus       562 l~s  564 (704)
                      .++
T Consensus       266 wva  268 (340)
T d1v04a_         266 WVG  268 (340)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.01  E-value=8.8  Score=38.32  Aligned_cols=104  Identities=9%  Similarity=0.099  Sum_probs=61.0

Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--------cCCCCeeEEEEcCC---CCEEEEEEC-------
Q 005277          464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--------GHLSDVDCVRWHIN---CNYIATGSS-------  525 (704)
Q Consensus       464 ~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~--------~~~~~V~~v~~~p~---~~~l~tgs~-------  525 (704)
                      ...++|+|.|+|++|++--..|.|++++..++.......        ........|+|||+   ..+|.....       
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            467799999999988877557999999887765433221        12245678999985   344443211       


Q ss_pred             C----Cc--EEEEeCCCCc-------EE-EEee-cCCCCEEEEEEecCCCEEEEEeC
Q 005277          526 D----KT--VRLWDVSSGE-------CV-RIFI-GHRSMILSLAMSPDGRYMASGDE  567 (704)
Q Consensus       526 d----g~--I~iwd~~~~~-------~~-~~~~-~h~~~i~~l~~spdg~~l~sg~~  567 (704)
                      +    ..  ++.+......       .+ .... ........|.|.|||.+.++.++
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            1    11  3333332211       01 1111 11234578999999987776654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.91  E-value=9.5  Score=33.56  Aligned_cols=145  Identities=10%  Similarity=0.093  Sum_probs=76.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCC--CEEEEE------eCCCeEEEEECCCCceeEEecc
Q 005277          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG--HYFASS------SHDRTARIWSMDRIQPLRIMAG  503 (704)
Q Consensus       432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~--~~l~sg------s~dg~i~lwd~~~~~~~~~~~~  503 (704)
                      +.+.|+.+...|.+.++-+..++.+.--   ..||....- |..  .++..+      -.-..+.+-++........+..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLt---kePI~~~~~-Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~s  100 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVLD-PHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA  100 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECC---SSCCSEECE-ECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEe---cccccCcCC-CccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecC
Confidence            3457778888899999988866655432   234432221 211  111111      1223344555543222233332


Q ss_pred             CC-CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee--c-------CCCCEEEEEE-ecCCCEEEEEeC-CCeE
Q 005277          504 HL-SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--G-------HRSMILSLAM-SPDGRYMASGDE-DGTI  571 (704)
Q Consensus       504 ~~-~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~-------h~~~i~~l~~-spdg~~l~sg~~-dg~I  571 (704)
                      .. -.|.+++. .+.+..++|+......+|-+..|+......  +       ....|..+.+ .++.+-++++.- .|.+
T Consensus       101 pk~vRI~S~~y-ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l  179 (313)
T d2hu7a1         101 VKPMRILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  179 (313)
T ss_dssp             SCSBEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred             CceEEEEEeee-cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence            22 34555555 356788899998899999988887543221  1       1223444433 233333455554 7777


Q ss_pred             EEEeCCCCee
Q 005277          572 MMWDLASGRC  581 (704)
Q Consensus       572 ~iwdl~~~~~  581 (704)
                      +|++...|..
T Consensus       180 ri~tpkeGS~  189 (313)
T d2hu7a1         180 RVFDSGEGSF  189 (313)
T ss_dssp             EEECCSSEEE
T ss_pred             EEecCCCCcc
Confidence            7777665543

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=83.75  E-value=10  Score=34.70  Aligned_cols=145  Identities=17%  Similarity=0.088  Sum_probs=69.9

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (704)
Q Consensus       422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~  501 (704)
                      ..|..|+--  ..+.+.-. ||.|..|-......+-.-......|..|.-- +...++.  .|+.+..|.....-.....
T Consensus        26 ~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G-~~~~~al--~dg~v~~wG~~~~gq~~~~   99 (273)
T d1jtdb_          26 SGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG-NYHSLAL--KDGEVIAWGGNEDGQTTVP   99 (273)
T ss_dssp             SSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC-SSEEEEE--ETTEEEEEECCTTSTTCCC
T ss_pred             CCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecC-CCceeee--eeeeeeccCCCcceeeccc
Confidence            357777664  22333334 8999999776554433222233455565543 2222332  4899999986543222111


Q ss_pred             ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (704)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~  578 (704)
                      ......+..++....  ..+. -.|+.+..|.-...............|..++-.  ... .....++.+..|-...
T Consensus       100 ~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~-~~~~~~g~~~~~G~~~  170 (273)
T d1jtdb_         100 AEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYT-ALAVKNGGVIAWGDNY  170 (273)
T ss_dssp             GGGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSE-EEEEETTEEEEEECCT
T ss_pred             cccccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEEecc--cee-eeeecccceeEeeccc
Confidence            112233445544322  2222 248889888644322111111112334444332  222 2334577888886543

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=82.78  E-value=17  Score=33.00  Aligned_cols=127  Identities=14%  Similarity=0.081  Sum_probs=60.8

Q ss_pred             CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEE
Q 005277          441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI  520 (704)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l  520 (704)
                      .||.+..|.................+..+.....  ..+. -.|+.+..|.-...............|..++-  . .+.
T Consensus        81 ~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~--~-~~~  154 (273)
T d1jtdb_          81 KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDG--G-VYT  154 (273)
T ss_dssp             ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEE--C-SSE
T ss_pred             eeeeeeccCCCcceeeccccccccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEEec--c-cee
Confidence            4789999976543222111112233444444322  2222 24889999975443222211222233444432  1 222


Q ss_pred             EEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277          521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (704)
Q Consensus       521 ~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl  576 (704)
                      +....++.++.|-................|..|+...  .+.+.- .||.|+.|=.
T Consensus       155 ~~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~--~h~~~l-~dG~v~~WG~  207 (273)
T d1jtdb_         155 ALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGI--FHSLAL-KDGKVIAWGD  207 (273)
T ss_dssp             EEEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECS--SEEEEE-ETTEEEEEEC
T ss_pred             eeeecccceeEeecccCCcccccccccCCccceeccc--eeeEEE-ecCcEEEcCC
Confidence            2333478888886543222111223345677776542  232222 3799999954