Citrus Sinensis ID: 005445

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690------
MGSSNGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKCHATMPSSSGEFREGSPIMSTISSSSINLQFEHMDANELAGSNREKVENNLTDSIRGSRNSVEVSSHNGKVDGPMIGDPRNKGLSFNSSNSKDAEKLAIEKIMSGPYVADQAFPLELDQLEDDLELKNQAKDFAGSTQNNSLGSCAVNIAAEATLTSMNGGSSSSALSPNGGLGELEVLSANLITSIGAFKVSTFL
cccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccEEEEcccccccHHHHHHHHHHHHccccccEEEEEcccccccEEEEEEcccccccEEccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEEccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccEcccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccEEEEccccccccHHHHHHHHHHHHccccHHcccccccccEEEEEEEEccEEEEEEEEEEccccccccccccccHHHHcccHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHcEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEEEEEEEccccccccccEEEEEccHHHHHHHHHHHHHHccccEEEEEEEEHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccc
mgssngqrlgitepislagptdddlMRTRKLEKYLRDVNLYESQEEAVSREEVLGRldqvhgpgadidtlcvgprhatreeDFFGELHQMLTempevtelhpvpdahvpvmkfKFSGVSIDLLYARLSLwvipedldisqdsilqNADEqtvrslngcrvtDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQlypnavpsmLVSRFFRVYtqwrwpnpvLLCAIeegslglqvwdprrnpkdkyhlmpiitpaypcmnssynvstsTLRIMMDEFQRGHEICEAMekneadvdwdtlfepftFFEAYKNYLRIdisaenaddlrnWKGWVESRLRQLTLKIERHTynmlqchphpgdfsdkskplyCSYFmglqrkqgvpvgegeqfDIRLTVKEFKQAVSMYTlrkpgmqiSVAHVtrrnlpnfvfpggvrpsrpskgtwdsRRALERKvsshtkpgaddgrkrkqtddnVDTHLrnakchatmpsssgefregspimstissssinlqfehmdanelagsnrekvennltdsirgsrnsvevsshngkvdgpmigdprnkglsfnssnskDAEKLAIEKImsgpyvadqafplelDQLEDDLELKNQAKdfagstqnnslgscAVNIAAEATLtsmnggssssalspngglgeLEVLSANLITSIgafkvstfl
mgssngqrlgitepislagptdddlMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEqtvrslngcrvtdqilrlvpkiqnfrtTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISaenaddlrnwKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPnfvfpggvrpsrpskgtwdsrralerkvsshtkpgaddgrkrkqtddnvdthlrnakchatmpsssgefreGSPIMSTISSSSINLQFEHMDANelagsnrekVENNltdsirgsrnsvevsshngkvdgpmigdprnkglsfnssnSKDAEKLAIEKIMSGPYVADQAFPLELDQLEDDLELKNQAKDFagstqnnslgSCAVNIAAEATLTSMNGGSSSSALSPNGGLGELEVLSANLItsigafkvstfl
MGSSNGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKCHATMPSSSGEFREGspimstissssiNLQFEHMDANELAGSNREKVENNLTDSIRGSRNSVEVSSHNGKVDGPMIGDPRNKGLSFNSSNSKDAEKLAIEKIMSGPYVADQAFPleldqleddlelKNQAKDFAGSTQNNSLGSCAVNIAAEATLTSMnggssssalspngglgELEVLSANLITSIGAFKVSTFL
*******************************EKYLRDVNLY***********VLGRLDQVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPG********************************************************************************************************************************************************IMSGPYVADQAFPL*****************************CAVNI*************************ELEVLSANLITSIGAFKV****
******Q****TEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQ******GEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPG************************************************************************************************************************************************************************************************************************************VLSANLITSIGAFKVSTFL
MGSSNGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPGGVRP***********************************DDNVDTHLRNAKCHAT***********SPIMSTISSSSINLQFEHMDANELAGSNREKVENNLTDSIRGSRNSVEVSSHNGKVDGPMIGDPRNKGLSFNSSNSKDAEKLAIEKIMSGPYVADQAFPLELDQLEDDLELKNQAKDFAGSTQNNSLGSCAVNIAAEATLTS***********PNGGLGELEVLSANLITSIGAFKVSTFL
*******RLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPGG****************************************************************************************************************************************************************************************************************************G*LGELEVLSANLITSIGAFKV**F*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSSNGQRLGITEPISLAGPTDDDLMRTRKxxxxxxxxxxxxxxxxxxxxxEVLGRLDQVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKCHATMPSSSGEFREGSPIMSTISSSSINLQFEHMDANELAGSNREKVENNLTDSIRGSRNSVEVSSHNGKVDGPMIGDPRNKGLSFNSSNSKDAEKLAIEKIMSGPYVADQAFPLELDQLEDDLELKNQAKDFAGSTQNNSLGSCAVNIAAEATLTSMNGGSSSSALSPNGGLGELEVLSANLITSIGAFKVSTFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query696 2.2.26 [Sep-21-2011]
Q54J73809 Poly(A) polymerase OS=Dic yes no 0.683 0.588 0.443 1e-122
Q9BWT3736 Poly(A) polymerase gamma yes no 0.625 0.591 0.412 1e-104
Q6PCL9739 Poly(A) polymerase gamma yes no 0.625 0.588 0.412 1e-104
P51003745 Poly(A) polymerase alpha no no 0.622 0.581 0.425 1e-101
Q61183739 Poly(A) polymerase alpha no no 0.610 0.575 0.430 1e-101
P25500739 Poly(A) polymerase alpha no no 0.610 0.575 0.430 1e-101
Q9NRJ5636 Poly(A) polymerase beta O no no 0.724 0.792 0.382 6e-99
Q9WVP6641 Poly(A) polymerase beta O no no 0.727 0.789 0.377 3e-98
P51004715 Poly(A) polymerase alpha- N/A no 0.633 0.616 0.412 1e-97
O42617558 Poly(A) polymerase PAPalp N/A no 0.534 0.666 0.426 1e-94
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1 Back     alignment and function desciption
 Score =  438 bits (1126), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/543 (44%), Positives = 316/543 (58%), Gaps = 67/543 (12%)

Query: 9   LGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ--------- 59
           LG+TEPIS A P+  D   + +LE  L   NL+ES EE+  REE+LG+L+Q         
Sbjct: 53  LGVTEPISTAPPSSIDFKLSTELENTLISFNLFESPEESRKREEILGKLNQIVREWAKQV 112

Query: 60  ---------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQMLT 92
                                      VHGPG+DIDTLCVGP+H  R  DFF +L  +L 
Sbjct: 113 SLKKGYPEQTASEVVAKIFTFGSYRLGVHGPGSDIDTLCVGPKHIMRS-DFFDDLSDILK 171

Query: 93  EMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDL-DISQDSILQNADEQT 151
             PE+TE   V DA VPV+   FSG+ IDL+YA+L+L  IPE+L D+  +S L+N DE++
Sbjct: 172 VHPEITEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNIDEKS 231

Query: 152 VRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARIC 211
           + SLNGCRVTDQIL+LVP I NFR  LRC++ WA RRG+YSN+ GFLGG++WALL ARIC
Sbjct: 232 ILSLNGCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGVSWALLTARIC 291

Query: 212 QLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGS-LGLQVWDPRRNPKDKYHLMPII 270
           QLYPN+ PS ++ RFF+VY  W+WP P+LLC I+EG  LG +VW+P+R   DK HLMPII
Sbjct: 292 QLYPNSAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPKR---DKAHLMPII 348

Query: 271 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 330
           TPAYP MNS+YNVS STL++M  EF RG EI   +E  E    W  L E   FF  Y  Y
Sbjct: 349 TPAYPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGEC--TWKNLLEKCDFFTRYSFY 406

Query: 331 LRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDK----SKP-- 384
           + ID  + N +D R W+GW+ES+LR L   +E  T  M    P+P  F++     + P  
Sbjct: 407 IEIDCYSMNEEDSRKWEGWIESKLRFLISNLE-STPKMKFAVPYPKGFTNNLHKANNPDQ 465

Query: 385 LYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPG---MQISVAHVTRRN 441
           +  S+FMGL        G  +  D+   V EF   +  +   +P    M I V ++ ++ 
Sbjct: 466 ICTSFFMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKKQ 525

Query: 442 LPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKC 501
           LP FV   G  P  P K T        +K SS  +P A    ++K   +N D  L + K 
Sbjct: 526 LPAFVKDEG--PEEPVKTT--------KKRSSTGEPSA---TRKKLKSENSDNKLNSPKS 572

Query: 502 HAT 504
             T
Sbjct: 573 PIT 575
Polymerase that creates the 3'-poly(A) tail of mRNA's. May acquire specificity through interaction with a cleavage and polyadenylation factor.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2 Back     alignment and function description
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1 Back     alignment and function description
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4 Back     alignment and function description
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4 Back     alignment and function description
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3 Back     alignment and function description
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1 Back     alignment and function description
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2 Back     alignment and function description
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a PE=2 SV=1 Back     alignment and function description
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query696
359490984757 PREDICTED: poly(A) polymerase-like [Viti 0.962 0.885 0.693 0.0
255567792770 Poly(A) polymerase alpha, putative [Rici 0.945 0.854 0.666 0.0
147795652 1097 hypothetical protein VITISV_015447 [Viti 0.880 0.558 0.732 0.0
449439435748 PREDICTED: poly(A) polymerase-like [Cucu 0.939 0.874 0.643 0.0
357521515 822 Poly(A) polymerase [Medicago truncatula] 0.952 0.806 0.605 0.0
356531174757 PREDICTED: poly(A) polymerase-like [Glyc 0.958 0.881 0.635 0.0
356522834757 PREDICTED: poly(A) polymerase-like [Glyc 0.899 0.826 0.643 0.0
357500153752 Poly(A) polymerase [Medicago truncatula] 0.958 0.886 0.604 0.0
224135441512 predicted protein [Populus trichocarpa] 0.670 0.912 0.789 0.0
297850192716 nucleotidyltransferase family protein [A 0.890 0.865 0.602 0.0
>gi|359490984|ref|XP_002279968.2| PREDICTED: poly(A) polymerase-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1003 bits (2593), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/714 (69%), Positives = 566/714 (79%), Gaps = 44/714 (6%)

Query: 3   SSNGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ--- 59
           +++GQRLGITEPISL GP + D+ +T++LEK+L    LYESQEEAVSREEVLGRLDQ   
Sbjct: 10  NNSGQRLGITEPISLGGPNELDVTKTQELEKFLAAAGLYESQEEAVSREEVLGRLDQIVK 69

Query: 60  ---------------------------------VHGPGADIDTLCVGPRHATREEDFFGE 86
                                            VHGPGADIDTLCVGPRHATREEDFFGE
Sbjct: 70  IWVKAISRAKGLNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGE 129

Query: 87  LHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQN 146
           LH+ML+EMPEVTELHPVPDAHVPVM+FKFSGVSIDLLYA+LSLWVIPEDLD+SQDSILQN
Sbjct: 130 LHKMLSEMPEVTELHPVPDAHVPVMRFKFSGVSIDLLYAKLSLWVIPEDLDVSQDSILQN 189

Query: 147 ADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALL 206
           ADEQTVRSLNGCRVTDQILRLVP IQNFRTTLR MRFWAKRRGVYSNVAGFLGGINWALL
Sbjct: 190 ADEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRFMRFWAKRRGVYSNVAGFLGGINWALL 249

Query: 207 VARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHL 266
           VARICQLYPNA+PSMLVSRFFRVYTQWRWPNPV+LCAIEEG+LGLQVWDPR+ PKD++HL
Sbjct: 250 VARICQLYPNALPSMLVSRFFRVYTQWRWPNPVMLCAIEEGTLGLQVWDPRKYPKDRFHL 309

Query: 267 MPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEA 326
           MPIITPAYPCMNSSYNVS+STLRIM +EF+RG+EI E ME N+A  DW TL EP+ FFEA
Sbjct: 310 MPIITPAYPCMNSSYNVSSSTLRIMSEEFKRGNEISEVMEANKA--DWATLCEPYPFFEA 367

Query: 327 YKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLY 386
           YKNYL+I+I+AENADDLR WKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKS+P +
Sbjct: 368 YKNYLQIEIAAENADDLRKWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSRPFH 427

Query: 387 CSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFV 446
           C YFMGLQRKQGVP  EGEQFDIRLTV EFK +V MYTL KPGM+I V HV RRN+PNFV
Sbjct: 428 CCYFMGLQRKQGVPASEGEQFDIRLTVDEFKHSVGMYTLWKPGMEIHVIHVRRRNIPNFV 487

Query: 447 FPGGVRPSRPSKGTWDSRRALERKVSSHTK-PGADDGRKRKQTDDNVDTHLRNAKCHATM 505
           FPGGVRPSRP+K   + RR LE  VS+     GA+D +KRK+ D+NV+T+ RNAKC    
Sbjct: 488 FPGGVRPSRPTKVASERRRVLEPNVSTQAVLEGAEDSKKRKREDENVETNSRNAKCLVAA 547

Query: 506 PSSSGEFREGSPIMSTISSSSINLQFEHMDANELAGSNREKVENNLTDSIRGSRNSVEVS 565
            SSS E    +P++ST+++ SI  + + MD N L  + +EKVENN+   ++   NSVEV 
Sbjct: 548 ASSSHEVLSSNPLVSTVNACSI--KVDSMDINMLGKTRKEKVENNIEHGLKNLNNSVEVP 605

Query: 566 SHNGKVDGPMIGDPRNKGLSFNSSNSK--DAEKLAIEKIMSGPYVADQAFPLELDQLEDD 623
             NG+VDG +      K LS +  +    +AEK+AIEKIMSGPYV+ QAFP ELD+LEDD
Sbjct: 606 PQNGEVDGSVRCSHPIKTLSSSGGSPSSTEAEKIAIEKIMSGPYVSHQAFPGELDELEDD 665

Query: 624 LELKNQAKDFAGSTQNNSLGSCAVNIAAEATLTSMNGGSSSSALSPNGGLGELE 677
           +E KNQ KDF GST+ +S  S   N+A E  LT+ +G    + LSPNGGL ELE
Sbjct: 666 VEYKNQVKDFTGSTKGSSAESSKANVAEEP-LTTTSGTVPCTILSPNGGLEELE 718

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255567792|ref|XP_002524874.1| Poly(A) polymerase alpha, putative [Ricinus communis] gi|223535837|gb|EEF37498.1| Poly(A) polymerase alpha, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147795652|emb|CAN61208.1| hypothetical protein VITISV_015447 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449439435|ref|XP_004137491.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus] gi|449521033|ref|XP_004167536.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357521515|ref|XP_003631046.1| Poly(A) polymerase [Medicago truncatula] gi|355525068|gb|AET05522.1| Poly(A) polymerase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356531174|ref|XP_003534153.1| PREDICTED: poly(A) polymerase-like [Glycine max] Back     alignment and taxonomy information
>gi|356522834|ref|XP_003530048.1| PREDICTED: poly(A) polymerase-like [Glycine max] Back     alignment and taxonomy information
>gi|357500153|ref|XP_003620365.1| Poly(A) polymerase [Medicago truncatula] gi|355495380|gb|AES76583.1| Poly(A) polymerase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224135441|ref|XP_002322074.1| predicted protein [Populus trichocarpa] gi|222869070|gb|EEF06201.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297850192|ref|XP_002892977.1| nucleotidyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338819|gb|EFH69236.1| nucleotidyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query696
TAIR|locus:2030943713 PAPS1 "poly(A) polymerase 1" [ 0.643 0.628 0.769 8.4e-210
TAIR|locus:2134113765 nPAP "nuclear poly(a) polymera 0.715 0.650 0.584 5.5e-169
TAIR|locus:2043560800 PAPS2 "poly(A) polymerase 2" [ 0.643 0.56 0.614 1.5e-164
DICTYBASE|DDB_G0288259809 papA "poly(A) polymerase" [Dic 0.635 0.546 0.462 7e-113
ZFIN|ZDB-GENE-030131-3507723 papola "poly(A) polymerase alp 0.577 0.556 0.458 5e-104
UNIPROTKB|Q9BWT3736 PAPOLG "Poly(A) polymerase gam 0.577 0.546 0.438 5e-104
ZFIN|ZDB-GENE-040426-1256744 papolg "poly(A) polymerase gam 0.568 0.532 0.470 3.6e-103
RGD|1310337739 Papolg "poly(A) polymerase gam 0.600 0.565 0.436 2.1e-101
FB|FBgn0015949659 hrg "hiiragi" [Drosophila mela 0.456 0.482 0.5 8e-100
UNIPROTKB|A5D7N5740 PAPOLG "Uncharacterized protei 0.632 0.594 0.418 2.3e-99
TAIR|locus:2030943 PAPS1 "poly(A) polymerase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1846 (654.9 bits), Expect = 8.4e-210, Sum P(2) = 8.4e-210
 Identities = 350/455 (76%), Positives = 386/455 (84%)

Query:    26 MRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQVHGPGADIDTLCVGPRHATREEDFFG 85
             ++T    K L D  L+E+  +  +      RL  VHGPGADIDTLCVGPRHATRE DFFG
Sbjct:    67 IKTISRAKGLNDQLLHEANAKIFTFGSY--RLG-VHGPGADIDTLCVGPRHATREGDFFG 123

Query:    86 ELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQ 145
             EL +ML+EMPEVTELHPVPDAHVP+M FK +GVSIDLLYA+L LWVIPEDLD+SQDSILQ
Sbjct:   124 ELQRMLSEMPEVTELHPVPDAHVPLMGFKLNGVSIDLLYAQLPLWVIPEDLDLSQDSILQ 183

Query:   146 NADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWAL 205
             NADEQTVRSLNGCRVTDQILRLVP IQNFRTTLRCMRFWAKRRGVYSNV+GFLGGINWAL
Sbjct:   184 NADEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWAL 243

Query:   206 LVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYH 265
             LVARICQLYPNA+P++LVSRFFRV+ QW WPN + LC+ +EGSLGLQVWDPR NPKD+ H
Sbjct:   244 LVARICQLYPNALPNILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDRLH 303

Query:   266 LMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFE 325
             +MPIITPAYPCMNSSYNVS STLRIM  EFQRG+EICEAME N+AD  WDTLFEPF FFE
Sbjct:   304 IMPIITPAYPCMNSSYNVSESTLRIMKGEFQRGNEICEAMESNKAD--WDTLFEPFAFFE 361

Query:   326 AYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPL 385
             AYKNYL+IDISA N DDLR WKGWVESRLRQLTLKIERH + ML CHPHP DF D S+PL
Sbjct:   362 AYKNYLQIDISAANVDDLRKWKGWVESRLRQLTLKIERH-FKMLHCHPHPHDFQDTSRPL 420

Query:   386 YCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNF 445
             +CSYFMGLQRKQGVP  EGEQFDIR TV+EFK  V+ YTL  PGM+ISV H+ RR+LPNF
Sbjct:   421 HCSYFMGLQRKQGVPAAEGEQFDIRRTVEEFKHTVNAYTLWIPGMEISVGHIKRRSLPNF 480

Query:   446 VFPGGVRPSRPSKGTWDS-RRALERKVSSHTKPGA 479
             VFPGGVRPS  SKGTWDS RR+  R  S+ + P A
Sbjct:   481 VFPGGVRPSHTSKGTWDSNRRSEHRNSSTSSAPAA 515
GO:0003723 "RNA binding" evidence=IEA
GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
GO:0043631 "RNA polyadenylation" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
TAIR|locus:2134113 nPAP "nuclear poly(a) polymerase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043560 PAPS2 "poly(A) polymerase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288259 papA "poly(A) polymerase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3507 papola "poly(A) polymerase alpha" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BWT3 PAPOLG "Poly(A) polymerase gamma" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1256 papolg "poly(A) polymerase gamma" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1310337 Papolg "poly(A) polymerase gamma" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0015949 hrg "hiiragi" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7N5 PAPOLG "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.7LOW CONFIDENCE prediction!
4th Layer2.7.7.19LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XV.841.1
hypothetical protein (512 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.01480064
hypothetical protein (740 aa)
    ••• 0.587
gw1.XII.1275.1
hypothetical protein (1455 aa)
   •••• 0.576
fgenesh4_pg.C_LG_XV000388
hypothetical protein (193 aa)
    • • 0.473
eugene3.00030785
hypothetical protein (770 aa)
     •• 0.430

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query696
pfam04928349 pfam04928, PAP_central, Poly(A) polymerase central 0.0
PTZ00418593 PTZ00418, PTZ00418, Poly(A) polymerase; Provisiona 1e-180
COG5186552 COG5186, PAP1, Poly(A) polymerase [RNA processing 1e-141
pfam04926141 pfam04926, PAP_RNA-bind, Poly(A) polymerase predic 2e-47
cd05402114 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT 1e-18
pfam0190992 pfam01909, NTP_transf_2, Nucleotidyltransferase do 0.001
>gnl|CDD|203124 pfam04928, PAP_central, Poly(A) polymerase central domain Back     alignment and domain information 
 Score =  524 bits (1353), Expect = 0.0
 Identities = 190/351 (54%), Positives = 245/351 (69%), Gaps = 39/351 (11%)

Query: 7   QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ------- 59
           ++ G+T+PIS AGPT  DL  T  L ++L++  L+ES+EE+  REEVL +L++       
Sbjct: 2   KQYGVTKPISTAGPTPADLELTDSLIEFLKEEGLFESEEESKKREEVLEKLNKLVKEWVK 61

Query: 60  -----------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQM 90
                                        VHGPG+DIDTLCV P+H TRE DFF   +++
Sbjct: 62  KVSEQKGMPERAAEAAGGKIFTFGSYRLGVHGPGSDIDTLCVAPKHVTRE-DFFSSFYEI 120

Query: 91  LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 150
           L   PEVTEL PV DA VP++KFKF G+ IDLL+A L+L  +P+DLD+  DS+L+N DE+
Sbjct: 121 LKLRPEVTELVPVEDAFVPIIKFKFDGIEIDLLFASLALPRVPDDLDLLDDSLLRNLDEK 180

Query: 151 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 210
           +VRSLNGCRVTD+ILRLVP    FRT LR ++ WAKRRG+YSNV GFLGG+ WA+LVAR+
Sbjct: 181 SVRSLNGCRVTDEILRLVPNKDVFRTALRAIKLWAKRRGIYSNVLGFLGGVAWAILVARV 240

Query: 211 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 270
           CQLYPNA PS LV +FFR+++QW+WPNPVLL  IEEG L  +VWDPR  P D+YHLMPII
Sbjct: 241 CQLYPNASPSTLVRKFFRIFSQWQWPNPVLLKPIEEGPLNFRVWDPRLYPSDRYHLMPII 300

Query: 271 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPF 321
           TPAYP MNS++NV+ STL+++ +EF+RG EI   +   +A   W  LFEP 
Sbjct: 301 TPAYPSMNSTHNVTRSTLKVITEEFKRGLEITSEILLGKA--PWSDLFEPH 349

The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta- sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different. Length = 349
>gnl|CDD|240410 PTZ00418, PTZ00418, Poly(A) polymerase; Provisional Back     alignment and domain information
>gnl|CDD|227513 COG5186, PAP1, Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|218331 pfam04926, PAP_RNA-bind, Poly(A) polymerase predicted RNA binding domain Back     alignment and domain information
>gnl|CDD|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>gnl|CDD|216779 pfam01909, NTP_transf_2, Nucleotidyltransferase domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 696
KOG2245562 consensus Poly(A) polymerase and related nucleotid 100.0
PTZ00418593 Poly(A) polymerase; Provisional 100.0
COG5186552 PAP1 Poly(A) polymerase [RNA processing and modifi 100.0
PF04928254 PAP_central: Poly(A) polymerase central domain; In 100.0
PF04926157 PAP_RNA-bind: Poly(A) polymerase predicted RNA bin 99.97
COG5260482 TRF4 DNA polymerase sigma [DNA replication, recomb 99.91
KOG1906514 consensus DNA polymerase sigma [Replication, recom 99.86
KOG2277596 consensus S-M checkpoint control protein CID1 and 99.44
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 99.32
TIGR03671408 cca_archaeal CCA-adding enzyme. 99.02
PRK13300447 tRNA CCA-pyrophosphorylase; Provisional 99.02
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 98.96
COG1746443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 98.37
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 97.91
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 97.75
PF0382860 PAP_assoc: Cid1 family poly A polymerase; InterPro 96.97
PF03813972 Nrap: Nrap protein; InterPro: IPR005554 Members of 96.04
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 95.72
PF14091152 DUF4269: Domain of unknown function (DUF4269) 95.26
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 93.21
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 83.35
cd00141307 NT_POLXc Nucleotidyltransferase (NT) domain of fam 81.29
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-140  Score=1137.52  Aligned_cols=444  Identities=58%  Similarity=1.017  Sum_probs=426.3

Q ss_pred             CccccccCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc--------------------------
Q 005445            6 GQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ--------------------------   59 (696)
Q Consensus         6 ~~~~Gvt~PIS~~~Pt~~d~~~t~~L~~~L~~~~l~eS~EE~~~Re~VL~~L~~--------------------------   59 (696)
                      +++||||+|||+|+||++|+++|.+|+++|+++|+|||+||..+|++||++|++                          
T Consensus        12 ~~~~Gvt~PiS~a~p~~~d~~lt~~L~~~L~~~g~fEs~eEt~~R~~VL~~L~~iVk~wVk~vs~~k~~p~~~~~~aggk   91 (562)
T KOG2245|consen   12 TKSYGVTQPISTAGPTEADIALTQELIKTLKNEGLFESKEETQRREEVLGKLNQIVKEWVKKVSEQKGLPDGMIENAGGK   91 (562)
T ss_pred             cccccccCCcccCCCcHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCce
Confidence            489999999999999999999999999999999999999999999999999998                          


Q ss_pred             ----------ccCCCCceeEEEecCCCCCccccHHHHHHHHHhCCCCceEEeecCCCCcceEEEEECCeeeEEEeecccC
Q 005445           60 ----------VHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSL  129 (696)
Q Consensus        60 ----------V~~pgSDID~LcV~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~A~VPIIKf~~~GI~iDL~fa~l~~  129 (696)
                                ||+||||||+|||+|+|++|+ |||..|+++|+++++|++|++|++|+||||||+|+||+|||+||+|++
T Consensus        92 IftfGSYRLGVhg~GADIDtLcV~Prhv~R~-DFF~sf~~mL~~~~eVteL~~V~dAfVPiikfKf~GI~IDllfArL~l  170 (562)
T KOG2245|consen   92 IFTFGSYRLGVHGPGADIDTLCVGPRHVSRS-DFFTSFYDMLKERPEVTELHAVEDAFVPIIKFKFDGIEIDLLFARLAL  170 (562)
T ss_pred             EEeccceeecccCCCCCcceeeeccccccHH-HHHHHHHHHHhcCccccccccccccccceEEEEecCeeeeeeehhccc
Confidence                      999999999999999999996 999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCCchhhhcccchhhHhhhchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCcCCCCCcchHHHHHHHHH
Q 005445          130 WVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVAR  209 (696)
Q Consensus       130 ~~vpe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~~LR~IK~WAKrRGIYsn~~GfLGGIswAILVAr  209 (696)
                      ++||+++||+||++|+++||+|+||||||||||+||+||||.+.||.+|||||+|||+||||||++||||||+|||||||
T Consensus       171 ~~VP~dldl~ddslLknlDe~~vrSLNGcRVtdqiL~LVPn~~~F~~tLRaiKlWAKrrgVYsN~~GF~GGV~wA~LVAR  250 (562)
T KOG2245|consen  171 PVVPEDLDLSDDSLLKNLDERCVRSLNGCRVTDQILKLVPNQENFRITLRAIKLWAKRRGVYSNVMGFLGGVAWAMLVAR  250 (562)
T ss_pred             ccCCCcccccchHhhhcccHHHHHHhcCcCHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCHHHHHHHHHHhhccCCCCCceeccccccCCCCccccCCCCCCCCCcccceeeCCCCCCCCcccccChhHHH
Q 005445          210 ICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR  289 (696)
Q Consensus       210 vCQlyPnas~~~LL~~FF~~Ys~WdWp~PV~L~~i~~g~lg~~vWdP~~~~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~  289 (696)
                      +|||||||++++||.+||.+|++|+||+||+|+.+++|.++++||||+.|+.||||+|||||||||+||+|||||+||++
T Consensus       251 iCQLYPNA~~s~Lv~kfF~ifs~W~WP~PVlL~~ie~~~L~~~VWdPr~n~~DryHlMPIITPAyP~~nsthNVS~ST~~  330 (562)
T KOG2245|consen  251 ICQLYPNASPSTLVAKFFRVFSQWNWPNPVLLKPIEEGNLNLPVWDPRVNPSDRYHLMPIITPAYPQMNSTHNVSRSTLK  330 (562)
T ss_pred             HHccCCCcchHHHHHHHHHHHhhccCCCceEeccccccccCccccCCCCCCCCcceecccccCCcccccccccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCcccccCCcchhhhcccEEEEEEEecChhhhcchhhhhHHHHHHHHHHHhhccccce
Q 005445          290 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNML  369 (696)
Q Consensus       290 vI~~Ef~RA~~Il~~i~~~~~~~~W~~Lfep~~FF~~Yk~yl~I~v~a~~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~l  369 (696)
                      +|++||+||++||++|+.++.  +|++|||+++||.+|||||+|+++|.++|++.+|.||||||+|+|+.+||++. .++
T Consensus       331 Vi~~Ef~~g~~I~~~i~~~k~--~W~~LFE~~~FF~rYk~yl~i~~~A~~~ed~l~w~G~vESriR~Lv~klE~~~-~i~  407 (562)
T KOG2245|consen  331 VITEEFKRGLEICDDIELNKL--DWSDLFELYNFFSRYKHYLQITASAATEEDLLKWVGWVESRIRQLVLKLERNQ-VIL  407 (562)
T ss_pred             HHHHHHHHHHHHHHHHHhccc--cHHHHhhhhHHHHHHhhHheeeeeccChHHHhhhhhHHHHHHHHHHHHHHhhc-ceE
Confidence            999999999999999999998  99999999999999999999999999999999999999999999999999964 678


Q ss_pred             eeccCCCCCCCCCC-----CceEEEEEeeEecCCCCCCCCcccchHHHHHHHHHHHH----hhccCCCC--cEEEEEEec
Q 005445          370 QCHPHPGDFSDKSK-----PLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVS----MYTLRKPG--MQISVAHVT  438 (696)
Q Consensus       370 ~ahp~P~~f~~~~~-----~~~~~ffIGL~~~~~~~~~~~~~~DL~~~v~eF~~~v~----~~~~~~~g--m~i~V~~vk  438 (696)
                      .|||+|+.|.++..     .+...|||||.+...      .++||+..+++|+..++    .++.++.|  |++.+.|+|
T Consensus       408 ~ahp~P~~f~~~~~~~~~~~~~~~~~igl~~~e~------~~~Dlt~~iq~f~~~v~~q~~~~~~~~~g~~~~~~~~~~k  481 (562)
T KOG2245|consen  408 IAHPNPKKFKDTYNCPLEEDPESLWFIGLEFDEN------VKIDLTKDIQSFKKNVERQAVNLTLIKAGCDVEIDFGHVK  481 (562)
T ss_pred             EecCCcccccccccCCcccchhHhhhhccccccc------ccchhhhhHHHhhhhhhhcceeeeeeeccccccccccccc
Confidence            99999999997642     466789999987653      34999999999999988    56778889  788888999


Q ss_pred             CCCCCCCcCCCCCCCCCCCCC
Q 005445          439 RRNLPNFVFPGGVRPSRPSKG  459 (696)
Q Consensus       439 r~~LP~~v~~~~~~~~~~~~~  459 (696)
                      |++|+.++++.+.+..|..+.
T Consensus       482 rr~l~~~~~~~~l~~~k~~~~  502 (562)
T KOG2245|consen  482 RRSLIQTITKEFLRLCKQYKK  502 (562)
T ss_pred             ccccccccCHHHhhHHHhhcc
Confidence            999999999999887775553

>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>PF04926 PAP_RNA-bind: Poly(A) polymerase predicted RNA binding domain; InterPro: IPR007010 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1 Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>PF14091 DUF4269: Domain of unknown function (DUF4269) Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query696
1q79_A514 Crystal Structure Of Mammalian Poly(A) Polymerase L 1e-101
1q78_A514 Crystal Structure Of Poly(A) Polymerase In Complex 1e-100
1f5a_A513 Crystal Structure Of Mammalian Poly(A) Polymerase L 5e-95
2o1p_A546 Structure Of Yeast Poly(A) Polymerase In A Somewhat 2e-87
2hhp_A530 Structure Of Yeast Poly(A) Polymerase In A Closed C 2e-87
1fa0_A537 Structure Of Yeast Poly(A) Polymerase Bound To Mang 3e-87
2q66_A525 Structure Of Yeast Poly(A) Polymerase With Atp And 5e-86
>pdb|1Q79|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 514 Back     alignment and structure 
Iteration: 1

 Score =  365 bits (936), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/479 (43%), Positives = 282/479 (58%), Gaps = 52/479 (10%)
Query: 10  GITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ---------- 59
           GIT PISLA P + D + T+KL + L+   ++E +EE   R  +LG+L+           
Sbjct: 21  GITSPISLAAPKETDXLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREIS 80
Query: 60  --------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQMLTE 93
                                     VH  GADID LCV PRH  R  DFF   +  L  
Sbjct: 81  ESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKL 139
Query: 94  MPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVR 153
             EV +L  V +A VPV+K  F G+ ID+L+ARL+L  IPEDLD+  DS+L+N D + +R
Sbjct: 140 QEEVKDLRAVEEAFVPVIKLXFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRXIR 199
Query: 154 SLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQL 213
           SLNGCRVTD+IL LVP I NFR TLR ++ WAKR  +YSN+ GFLGG++WA+LVAR CQL
Sbjct: 200 SLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQL 259
Query: 214 YPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPA 273
           YPNA+ S LV +FF V+++W WPNPVLL   EE +L L VWDPR NP D+YHLMPIITPA
Sbjct: 260 YPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPA 319
Query: 274 YPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRI 333
           YP  NS+YNVS ST  +M++EF++G  I + +  ++A  +W  LFE   FF+ YK+Y+ +
Sbjct: 320 YPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVL 377
Query: 334 DISAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPLYCS 388
             SA        W G VES++R L   +E++ +  L     Q  P P +  DK +     
Sbjct: 378 LASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEE-FRTM 436
Query: 389 YFMGLQRKQGVPVGEGEQFDIRLTVKEF-----KQAVSMYTLRKPGMQISVAHVTRRNL 442
           + +GL  K+     E    D+   ++ F     +QA++   + +  M+I+  HV R+ L
Sbjct: 437 WVIGLVFKK-TENSENLSVDLTYDIQSFTDTVYRQAINS-KMFEVDMKIAAMHVKRKQL 493
>pdb|1Q78|A Chain A, Crystal Structure Of Poly(A) Polymerase In Complex With 3'- Datp And Magnesium Chloride Length = 514 Back     alignment and structure
>pdb|1F5A|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 513 Back     alignment and structure
>pdb|2O1P|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed State Length = 546 Back     alignment and structure
>pdb|2HHP|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Closed Conformation Length = 530 Back     alignment and structure
>pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate And 3'-Datp Length = 537 Back     alignment and structure
>pdb|2Q66|A Chain A, Structure Of Yeast Poly(A) Polymerase With Atp And Oligo(A) Length = 525 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query696
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 1e-171
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 1e-164
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 1e-12
4ep7_A340 Poly(A) RNA polymerase protein CID1; poly(U) polym 7e-06
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 2e-05
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 4e-05
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323 Back     alignment and structure
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340 Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query696
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 100.0
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 100.0
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 100.0
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 100.0
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 100.0
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 100.0
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 99.97
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 99.96
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 99.96
1r89_A437 TRNA nucleotidyltransferase; CCA adding enzyme, in 98.69
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 98.32
4at7_A364 Interleukin enhancer-binding factor 2; transcripti 93.19
4at7_B383 NF90, interleukin enhancer-binding factor 3; trans 91.54
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 696
d2q66a1150 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, mid 1e-85
d1q79a1150 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, mid 4e-83
d1q79a2196 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te 2e-68
d2q66a2197 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter 3e-65
d1q79a3134 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-t 7e-39
d2q66a3178 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-t 7e-37
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 1e-19
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: Poly(A) polymerase, PAP, middle domain
domain: Poly(A) polymerase, PAP, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  264 bits (675), Expect = 1e-85
 Identities = 71/151 (47%), Positives = 107/151 (70%), Gaps = 2/151 (1%)

Query: 169 PKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFR 228
           PK   FR  LR ++ WA+RR VY+N+ GF GG+ WA+LVARICQLYPNA  +++++RFF 
Sbjct: 1   PKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNACSAVILNRFFI 60

Query: 229 VYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTL 288
           + ++W WP PV+L  IE+G L ++VW+P+   +D+ H MP+ITPAYP M +++N++ ST 
Sbjct: 61  ILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTK 120

Query: 289 RIMMDEFQRGHEICEAMEKNEADVDWDTLFE 319
           ++++ EF RG +I   +  N+    W  LFE
Sbjct: 121 KVILQEFVRGVQITNDIFSNKK--SWANLFE 149
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Length = 150 Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196 Back     information, alignment and structure
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 Back     information, alignment and structure
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 134 Back     information, alignment and structure
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 178 Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query696
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 100.0
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 100.0
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 100.0
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 100.0
d2q66a3178 Poly(A) polymerase, PAP, C-terminal domain {Baker' 99.97
d1q79a3134 Poly(A) polymerase, PAP, C-terminal domain {Cow (B 99.96
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 99.86
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 96.57
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 95.78
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 86.02
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: Poly(A) polymerase, PAP, middle domain
domain: Poly(A) polymerase, PAP, middle domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-57  Score=430.10  Aligned_cols=150  Identities=59%  Similarity=1.142  Sum_probs=147.1

Q ss_pred             CChhhHHHHHHHHHHHHHHhcCCcCCCCCcchHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCCCCceeccccccCC
Q 005445          169 PKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGS  248 (696)
Q Consensus       169 Pn~~~FR~~LR~IK~WAKrRGIYsn~~GfLGGIswAILVArvCQlyPnas~~~LL~~FF~~Ys~WdWp~PV~L~~i~~g~  248 (696)
                      ||+++||.+|||||+|||+||||||++||||||+|||||||+||+|||+++++||.+||.+|++|+||+||+|++++++.
T Consensus         1 Pn~~~Fr~~lR~IKlWAk~RGIYsn~~GflGGI~waILvArvCql~Pna~~~~ll~~FF~~ys~W~Wp~PV~l~~~~~~~   80 (150)
T d1q79a1           1 PNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECN   80 (150)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCS
T ss_pred             CCHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCCCCCeeccCccccc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCCCCCCCcccceeeCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHHHhccCCCCcccccCC
Q 005445          249 LGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEP  320 (696)
Q Consensus       249 lg~~vWdP~~~~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~vI~~Ef~RA~~Il~~i~~~~~~~~W~~Lfep  320 (696)
                      +++++|||+.+++||+|+||||||+||++|+|+|||.+|+++|++||+||.+|++++..++.  +|++|||.
T Consensus        81 ~~~~~w~pr~~~~dr~~lMpIiTPayP~~Nst~nvt~st~~~i~~E~~ra~~i~~~i~~~~~--~W~~Lfe~  150 (150)
T d1q79a1          81 LNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEA  150 (150)
T ss_dssp             SCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSS--CHHHHTCC
T ss_pred             CCCCCCCCCCCCcccccccccccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999998887  99999974
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure