Citrus Sinensis ID: 005454
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 696 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FIB2 | 995 | Putative pentatricopeptid | yes | no | 0.866 | 0.606 | 0.418 | 1e-139 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.941 | 0.833 | 0.386 | 1e-137 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.943 | 0.841 | 0.368 | 1e-137 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.915 | 0.857 | 0.360 | 1e-137 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.926 | 0.848 | 0.354 | 1e-133 | |
| Q56XI1 | 705 | Pentatricopeptide repeat- | no | no | 0.889 | 0.878 | 0.384 | 1e-130 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.866 | 0.732 | 0.378 | 1e-130 | |
| Q9FXB9 | 704 | Pentatricopeptide repeat- | no | no | 0.893 | 0.883 | 0.377 | 1e-129 | |
| Q9FRI5 | 790 | Pentatricopeptide repeat- | no | no | 0.859 | 0.756 | 0.381 | 1e-129 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.870 | 0.749 | 0.373 | 1e-129 |
| >sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 494 bits (1273), Expect = e-139, Method: Compositional matrix adjust.
Identities = 269/643 (41%), Positives = 380/643 (59%), Gaps = 40/643 (6%)
Query: 94 NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
N L++ +A+ GS+ D R +F M +DSVS+N+ I G G EA++ + M++
Sbjct: 353 NGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDIL 412
Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
P +T +S+L++CA L + G+QIHG+ + + NV V NAL +YA+ G +++ R +
Sbjct: 413 PGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKI 472
Query: 214 FDRMNNRNLVSWNLMISGYLKN-----------------GQPKKCIDL-----------F 245
F M + VSWN +I ++ GQ I F
Sbjct: 473 FSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSF 532
Query: 246 QEM--QLLGLN-----PDEVTVSNILGACF-QTGRIDDAGRLFHVIKEK-DNVCWTTMIV 296
E+ Q+ GL DE T N L AC+ + G +D ++F + E+ DNV W +MI
Sbjct: 533 GELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMIS 592
Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
GY N AL L ML R D F ++V+S+ A +A+L G VH +V ++
Sbjct: 593 GYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLES 652
Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL- 415
D++V SAL+DMY KCG D A FN MP RN SWNSMI+GYA++GQ EAL L++ +
Sbjct: 653 DVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMK 712
Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
L PD TFV VLSAC HA L E G HF+S+S +G+ P ++H++CM ++LGR+ +
Sbjct: 713 LDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGE 772
Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH--GEMAARHLFELEPINAGPYIMLS 533
+DK D I+ +P KPN LIW T+L C K G+ AA LF+LEP NA Y++L
Sbjct: 773 LDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLG 832
Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
NMYAA GRWED+ R MK +VKK A YSW+ + + VH FV+ D++HP+ ++IY++L
Sbjct: 833 NMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLK 892
Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
+L +K+++AG+ P T L+D ++E K + + YHSEKLA+A+ L + PIRIMKN+
Sbjct: 893 ELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNL 952
Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
RVCGDCH K+ S I GR IILRDSNRFHHF G CSC D W
Sbjct: 953 RVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust.
Identities = 269/696 (38%), Positives = 402/696 (57%), Gaps = 41/696 (5%)
Query: 5 HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
HK + + + G T+ T ++ +E K++ S + N + + N
Sbjct: 128 HKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVS-VSNS 186
Query: 65 LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
LL+ YAK G A+ +FD+M +RDI SWNA+++ H + G + A F++M RD V++
Sbjct: 187 LLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTW 246
Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRF-EPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
N+ I+GF +G+ AL +FS+M +D P +T S L+ACA L L GKQIH IV
Sbjct: 247 NSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIV 306
Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV--SWNLMISGYLKNGQPKKC 241
+ V NAL MY++ G ++ AR L ++ ++L + ++ GY+K
Sbjct: 307 TTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIK------- 359
Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
G ++ A +F +K++D V WT MIVGY Q+
Sbjct: 360 ----------------------------LGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQH 391
Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
G +A+ LF M+ RP+ +++++++S + LASL HG+ +HG AV G + VS
Sbjct: 392 GSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVS 451
Query: 362 SALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
+ALI MY K G A F+++ R+ VSW SMI AQ+G EAL L++ +L E L
Sbjct: 452 NALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGL 511
Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
+PD T+V V SAC HA L +G+ +FD + V I P+L HYACM++L GR+ + +A
Sbjct: 512 RPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQ 571
Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
+ I+ +P +P+ + W +LLS C + +I G++AA L LEP N+G Y L+N+Y+ACG
Sbjct: 572 EFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACG 631
Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
+WE+ A IR SMK VKK +SWIE+ +KVH F ED THPE IY + K+ +++
Sbjct: 632 KWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIK 691
Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
+ G+ P+T VLHD +EE K + + +HSEKLA+A+ LI P T +RIMKN+RVC DCH
Sbjct: 692 KMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTT-LRIMKNLRVCNDCH 750
Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
+KF S ++GR II+RD+ RFHHF G CSC+D W
Sbjct: 751 TAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 489 bits (1260), Expect = e-137, Method: Compositional matrix adjust.
Identities = 258/700 (36%), Positives = 409/700 (58%), Gaps = 43/700 (6%)
Query: 25 AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH-NRLLHFYAKSGKLFYARDLFD 83
+Y ++ R + ELA++L M P + N ++ Y ++ L AR+LF+
Sbjct: 97 SYNGMISGYLRNGEFELARKLFDEM------PERDLVSWNVMIKGYVRNRNLGKARELFE 150
Query: 84 KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
MP RD+ SWN +LS +A++G V D R++FD+MP ++ VS+N ++ + EA +
Sbjct: 151 IMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACML 210
Query: 144 FSRMQ-----------------------KDRFEPTDYTHVSALNAC----AQLLDLRRGK 176
F + + F+ + V + N AQ + +
Sbjct: 211 FKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEAR 270
Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
Q+ + V + VF A+ Y + +++AR LFD+M RN VSWN M++GY++
Sbjct: 271 QLFDESPVQD----VFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGE 326
Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
+ + +LF M ++ T + ++ Q G+I +A LF + ++D V W MI
Sbjct: 327 RMEMAKELFDVMPCRNVS----TWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIA 382
Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
GY+Q+G +AL LF +M E R ++ S SS +S+CA + +L G+ +HG+ V G +
Sbjct: 383 GYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET 442
Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
V +AL+ MYCKCG ++A +F M +++VSWN+MI GY+++G AL ++ +
Sbjct: 443 GCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMK 502
Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
+E LKPD T V+VLSAC H L ++G+ +F +++ +G+ P+ HYACM++LLGR+ +
Sbjct: 503 REGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLL 562
Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
+ A +L+K++P +P++ IW TLL + G+ + E AA +F +EP N+G Y++LSN+Y
Sbjct: 563 EDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLY 622
Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
A+ GRW DV +R M+ K VKK YSWIEI NK H F D HPE + I+ L +L
Sbjct: 623 ASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELD 682
Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
++++AG+ T +VLHD +EEEK + + YHSE+LA+AY +++ G PIR++KN+RVC
Sbjct: 683 LRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSG-RPIRVIKNLRVC 741
Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
DCH +K+ + I GR IILRD+NRFHHF G+CSC D W
Sbjct: 742 EDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 488 bits (1256), Expect = e-137, Method: Compositional matrix adjust.
Identities = 254/704 (36%), Positives = 399/704 (56%), Gaps = 67/704 (9%)
Query: 59 TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
TFL+N ++H YA YAR +FD++P ++ SWN LL A++++G + ++ + F+K+P
Sbjct: 41 TFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPD 100
Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQ 177
RD V++N I G++ G A++ ++ M +D T T ++ L + + GKQ
Sbjct: 101 RDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQ 160
Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV-------------- 223
IHG+++ + V + L MYA G I A+ +F +++RN V
Sbjct: 161 IHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGM 220
Query: 224 ----------------SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
SW MI G +NG K+ I+ F+EM++ GL D+ ++L AC
Sbjct: 221 IEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPAC 280
Query: 268 FQTGRIDD-----------------------------------AGRLFHVIKEKDNVCWT 292
G I++ A +F +K+K+ V WT
Sbjct: 281 GGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWT 340
Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
M+VGY Q G+ E+A+ +F +M + PD +++ +S+CA ++SL G HGKA+
Sbjct: 341 AMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITS 400
Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
G+ + VS++L+ +Y KCG DD+ +FN M R+ VSW +M++ YAQ G+ +E + L+
Sbjct: 401 GLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLF 460
Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
DK++Q LKPD T V+SAC A L E+GQ +F +++ +GI PS+ HY+CMI+L R
Sbjct: 461 DKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSR 520
Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
S +++A+ I +P P+++ W+TLLS C KG+++ G+ AA L EL+P + Y +L
Sbjct: 521 SGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLL 580
Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
S++YA+ G+W+ VA +R M+ KNVKK SWI+ K+H F ++D + P + IY +L
Sbjct: 581 SSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKL 640
Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
+L K+ + G+ P+T V HD +E KVK + YHSE+LA+A+ LI P G PIR+ KN
Sbjct: 641 EELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSG-QPIRVGKN 699
Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
+RVC DCH K S + GR I++RD+ RFH F G CSC D W
Sbjct: 700 LRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 475 bits (1223), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/692 (35%), Positives = 403/692 (58%), Gaps = 47/692 (6%)
Query: 14 LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQ-----SHMDLNFYEPNTTFLHNRLLHF 68
++S G L C ++ ++ K++ S +D++ F+ + H
Sbjct: 107 MFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMD------AFVQGSMFHM 160
Query: 69 YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSY 124
Y + G++ AR +FD+M +D+++ +ALL A+AR G ++++ + +M + VS+
Sbjct: 161 YMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSW 220
Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
N ++GF G+ +EA+ +F ++ F P T S L + L G+ IHG ++
Sbjct: 221 NGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIK 280
Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
L + V +A+ DMY K G + LF++ N I+G +NG K +++
Sbjct: 281 QGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEM 340
Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
F+ + E T+ E + V WT++I G QNGK+
Sbjct: 341 FELFK-------EQTM------------------------ELNVVSWTSIIAGCAQNGKD 369
Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
+AL LF EM V+P+ +I S++ +C +A+L HG+ HG AV + + D++ V SAL
Sbjct: 370 IEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSAL 429
Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
IDMY KCG + + VFNMMPT+N+V WNS++NG++ +G+ E +++++ L++ LKPD
Sbjct: 430 IDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDF 489
Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
+F S+LSAC L + G +F +S +GI P L+HY+CM+NLLGR+ + +A DLIK
Sbjct: 490 ISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIK 549
Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
+P +P+S +W LL+ C ++ ++ E+AA LF LEP N G Y++LSN+YAA G W +
Sbjct: 550 EMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTE 609
Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGF 604
V SIR+ M+S +KK SWI++ N+V+ ++ D++HP+ + I E++ ++ K+++++G
Sbjct: 610 VDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGH 669
Query: 605 SPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMK 664
PN LHD +E+E+ + + HSEKLA+ + L+ P G TP++++KN+R+CGDCH +K
Sbjct: 670 RPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDG-TPLQVIKNLRICGDCHAVIK 728
Query: 665 FASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
F S GR I +RD+NRFHHF G CSC D W
Sbjct: 729 FISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/638 (38%), Positives = 379/638 (59%), Gaps = 19/638 (2%)
Query: 63 NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
N L+ Y K+G++ AR +FD MP R+++SW AL+ + +G V +LF KMP ++ V
Sbjct: 83 NGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKV 142
Query: 123 SYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
S+ + GF G +A +++ + KD T H C + G+ +
Sbjct: 143 SWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIH----GLC------KEGRVDEAR 192
Query: 182 IVVGNLGG-NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
+ + +V + Y + +D AR +FD M + VSW M+ GY++NG+ +
Sbjct: 193 EIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIED 252
Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
+LF+ M + + + + ++ Q G I A R+F +KE+++ W T+I + +
Sbjct: 253 AEELFEVMPVKPV----IACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHER 308
Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
NG E +AL LF M + VRP ++ S++S CA LASL+HG+ VH + V D D+ V
Sbjct: 309 NGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYV 368
Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL-LQEN 419
+S L+ MY KCG + +F+ P+++++ WNS+I+GYA +G EAL ++ ++ L +
Sbjct: 369 ASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGS 428
Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
KP+ TFV+ LSAC +A + E G ++S+ +V G+ P HYACM+++LGR+ ++A
Sbjct: 429 TKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEA 488
Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
+++I S+ +P++ +W +LL C + E A+ L E+EP N+G YI+LSNMYA+
Sbjct: 489 MEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQ 548
Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED-RTHPETEIIYEELSKLIKK 598
GRW DVA +R MK++ V+K SW E++NKVH F +HPE E I + L +L
Sbjct: 549 GRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGL 608
Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
L+EAG++P+ LHD EEEKV S+ YHSE+LA+AY L+K G+ PIR+MKN+RVC D
Sbjct: 609 LREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGI-PIRVMKNLRVCSD 667
Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
CH +K S + R IILRD+NRFHHF G CSCKD W
Sbjct: 668 CHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 244/645 (37%), Positives = 378/645 (58%), Gaps = 42/645 (6%)
Query: 89 DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
D+ +L+ ++R +V + R LFD+MP+RD S+N I+G+ G ++EAL + + ++
Sbjct: 184 DVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR 243
Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
T VS L+AC + D RG IH + L +FV N L D+YA+ G +
Sbjct: 244 A----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLR 299
Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD------------ 256
+ +FDRM R+L+SWN +I Y N QP + I LFQEM+L + PD
Sbjct: 300 DCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILS 359
Query: 257 -----------------------EVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWT 292
++T+ N + + + G +D A +F+ + D + W
Sbjct: 360 QLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWN 419
Query: 293 TMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
T+I GY QNG +A+ ++N M E ++ ++ + SV+ +C++ +L G +HG+ +
Sbjct: 420 TIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLK 479
Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
G+ D+ V ++L DMY KCG +DA ++F +P N V WN++I + +G +A+ L
Sbjct: 480 NGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVML 539
Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
+ ++L E +KPD TFV++LSAC H+ L + GQ F+ + +GITPSL HY CM+++ G
Sbjct: 540 FKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYG 599
Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
R+ ++ A+ IKS+ +P++ IW LLS C + G++ G++A+ HLFE+EP + G +++
Sbjct: 600 RAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVL 659
Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
LSNMYA+ G+WE V IRS K ++K +S +E+DNKV F + ++THP E +Y E
Sbjct: 660 LSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRE 719
Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
L+ L KL+ G+ P+ + VL D +++EK + HSE+LA+A+ LI P T IRI K
Sbjct: 720 LTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATP-AKTTIRIFK 778
Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
N+RVCGDCH KF S I R II+RDSNRFHHF G CSC D W
Sbjct: 779 NLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 464 bits (1193), Expect = e-129, Method: Compositional matrix adjust.
Identities = 251/665 (37%), Positives = 382/665 (57%), Gaps = 43/665 (6%)
Query: 63 NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
N ++ Y +G AR LFD+M R+++SWN L+S + ++ + + R +F+ MP R+ V
Sbjct: 52 NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV 111
Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD---LRRGKQIH 179
S+ + G+ +G EA +F RM + VS L+D + + ++++
Sbjct: 112 SWTAMVKGYMQEGMVGEAESLFWRM-------PERNEVSWTVMFGGLIDDGRIDKARKLY 164
Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
+ V ++ + + L + G +D+AR +FD M RN+V+W MI+GY +N +
Sbjct: 165 DMMPVKDVVASTNMIGGL----CREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVD 220
Query: 240 KCIDLFQEM----------QLLGLNPD----------EVTVSNILGAC-------FQTGR 272
LF+ M LLG EV + AC + G
Sbjct: 221 VARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGE 280
Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
I A R+F +++++DN W MI Y + G E +AL LF +M + VRP S+ S++S
Sbjct: 281 ISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSV 340
Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
CA LASL +G+ VH V DDD+ V+S L+ MY KCG A VF+ +++++ W
Sbjct: 341 CATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMW 400
Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
NS+I+GYA +G EAL ++ ++ P+ T +++L+AC +A E G F+S+ +
Sbjct: 401 NSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMES 460
Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
+TP+++HY+C +++LGR+ VDKA++LI+S+ KP++ +W LL C + E
Sbjct: 461 KFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAE 520
Query: 513 MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572
+AA+ LFE EP NAG Y++LS++ A+ +W DVA +R +M++ NV KF SWIE+ KV
Sbjct: 521 VAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKV 580
Query: 573 HKFVSED-RTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKL 631
H F + HPE +I L K L+EAG+SP+ VLHD EEEKV S+ HSE+L
Sbjct: 581 HMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERL 640
Query: 632 ALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCS 691
A+AY L+K P GV PIR+MKN+RVCGDCH +K S + R IILRD+NRFHHF G CS
Sbjct: 641 AVAYGLLKLPEGV-PIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECS 699
Query: 692 CKDNW 696
C+D W
Sbjct: 700 CRDYW 704
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 462 bits (1189), Expect = e-129, Method: Compositional matrix adjust.
Identities = 247/647 (38%), Positives = 375/647 (57%), Gaps = 49/647 (7%)
Query: 59 TFLHNRLLHFYAKSGK----LFYARDLFDKMPLRDIISWNALLSAHARSGSV----QDLR 110
T + N L+ Y+K L AR +FD++ +D SW +++ + ++G + L
Sbjct: 184 TSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLE 243
Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
+ D M + V+YN I+G+ N+GF +EAL++ RM E ++T+ S + ACA
Sbjct: 244 GMDDNMKL---VAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAG 300
Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
L+ GKQ+H V+ + N+L +Y K G+ D+AR +F++M ++LVSWN ++S
Sbjct: 301 LLQLGKQVHA-YVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLS 359
Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
GY+ +G I +A +F +KEK+ +
Sbjct: 360 GYVSSGH-----------------------------------IGEAKLIFKEMKEKNILS 384
Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
W MI G +NG E+ L LF+ M E P ++ S + SCA L + +GQ H + +
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL 444
Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
+G D L +ALI MY KCGV ++A VF MP + VSWN++I Q+G EA+
Sbjct: 445 KIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVD 504
Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
+Y+++L++ ++PD T ++VL+AC HA L ++G+ +FDS+ V+ I P DHYA +I+LL
Sbjct: 505 VYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLL 564
Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
RS A +I+SLP KP + IW LLS C + G+++ G +AA LF L P + G Y+
Sbjct: 565 CRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYM 624
Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
+LSNM+AA G+WE+VA +R M+ + VKK A SWIE++ +VH F+ +D +HPE E +Y
Sbjct: 625 LLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYI 684
Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEE-EKVKSICYHSEKLALAYCLIKKPHGVTPIRI 649
L L K+++ G+ P+T VLHD + + K + HSEK+A+A+ L+K P G T IRI
Sbjct: 685 YLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTT-IRI 743
Query: 650 MKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
KN+R CGDCH F +F S ++ R IILRD RFHHF G CSC + W
Sbjct: 744 FKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 461 bits (1186), Expect = e-129, Method: Compositional matrix adjust.
Identities = 240/643 (37%), Positives = 370/643 (57%), Gaps = 37/643 (5%)
Query: 89 DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
D+ + L + +A+ V + R +FD+MP RD VS+NT +AG++ G +R AL++ M
Sbjct: 169 DLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMC 228
Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
++ +P+ T VS L A + L + GK+IHG + V + AL DMYAK G ++
Sbjct: 229 EENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLE 288
Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
AR LFD M RN+VSWN MI Y++N PK+ + +FQ+M G+ P +V+V L AC
Sbjct: 289 TARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACA 348
Query: 268 ----FQTGR------------------------------IDDAGRLFHVIKEKDNVCWTT 293
+ GR +D A +F ++ + V W
Sbjct: 349 DLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNA 408
Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
MI+G+ QNG+ DAL F++M S V+PD F+ SV+++ A+L+ +H + +HG +
Sbjct: 409 MILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSC 468
Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
+D ++ V++AL+DMY KCG A +F+MM R+V +WN+MI+GY +G AL L++
Sbjct: 469 LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFE 528
Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
++ + +KP+ TF+SV+SAC H+ L E G F + + I S+DHY M++LLGR+
Sbjct: 529 EMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRA 588
Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
+++A D I +P KP ++ +L C + ++ E AA LFEL P + G +++L+
Sbjct: 589 GRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLA 648
Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
N+Y A WE V +R SM + ++K S +EI N+VH F S HP+++ IY L
Sbjct: 649 NIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLE 708
Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
KLI ++EAG+ P+T LVL + + K + + HSEKLA+++ L+ G T I + KN+
Sbjct: 709 KLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTT-IHVRKNL 766
Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
RVC DCH K+ S + GR I++RD RFHHF G CSC D W
Sbjct: 767 RVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 696 | ||||||
| 359484341 | 695 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 1.0 | 0.708 | 0.0 | |
| 224143620 | 695 | predicted protein [Populus trichocarpa] | 0.998 | 1.0 | 0.708 | 0.0 | |
| 449520543 | 695 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.998 | 1.0 | 0.668 | 0.0 | |
| 449459160 | 695 | PREDICTED: putative pentatricopeptide re | 0.998 | 1.0 | 0.666 | 0.0 | |
| 356519952 | 693 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 1.0 | 0.669 | 0.0 | |
| 255570455 | 446 | pentatricopeptide repeat-containing prot | 0.626 | 0.977 | 0.681 | 1e-179 | |
| 147799436 | 420 | hypothetical protein VITISV_012312 [Viti | 0.502 | 0.833 | 0.744 | 1e-165 | |
| 148909481 | 795 | unknown [Picea sitchensis] | 0.872 | 0.763 | 0.404 | 1e-147 | |
| 224108621 | 743 | predicted protein [Populus trichocarpa] | 0.948 | 0.888 | 0.383 | 1e-146 | |
| 225425015 | 743 | PREDICTED: putative pentatricopeptide re | 0.969 | 0.908 | 0.381 | 1e-146 |
| >gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera] gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/696 (70%), Positives = 579/696 (83%), Gaps = 1/696 (0%)
Query: 1 MKAKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF 60
MK +LR+AID LYSRG A E+YT+L+L C R NDV AKRLQ+HMDL+ Y+P TF
Sbjct: 1 MKPTPRLREAIDALYSRG-TANSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTF 59
Query: 61 LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
L NRLLH YAKSG L ARDLFDKM RD+ SWNA+LSA+++SG+V+DLRA+FD+M + D
Sbjct: 60 LQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHD 119
Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
+VSYNT IAGF+ G S +AL+ F RMQ++ FE TDYTHVS L+AC+QLLD++RGKQIHG
Sbjct: 120 AVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHG 179
Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
+IV +LG +VFV NALT+MYAK G +D+ARWLFDRM N+N+VSWN MISGYL+NGQP+
Sbjct: 180 RIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPET 239
Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
C LF EMQ GL PD+VT+SNIL A FQ G ID+A + F IKEKD VCWTTM+VG Q
Sbjct: 240 CTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQ 299
Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
NGKEEDAL+LF EML E+VRPD F+ISSVVSSCA+LASL GQ VHGKAV+ GVD DLLV
Sbjct: 300 NGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLV 359
Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
SSAL+DMY KCG T DAW VF M TRNV+SWNSMI GYAQNG+DLEALALY+++L ENL
Sbjct: 360 SSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENL 419
Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
KPD+ TFV VLSAC+HA L ERGQ +F SIS +HG+ P+ DHY+CMINLLGR+ +DKAV
Sbjct: 420 KPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAV 479
Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
DLIKS+ +PN LIWSTLLSVC + D+ +GEMAARHLFEL+P NAGPYIMLSN+YAACG
Sbjct: 480 DLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACG 539
Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
RW+DVA++RS MK+ +KKFAAYSWIEIDN+VHKFV+EDRTH ETE IYEEL++LIKKLQ
Sbjct: 540 RWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQ 599
Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
E+GF+P+T LVLHD EEEK SICYHSEKLALA+ LIKKPHG TPIRIMKNIRVCGDCH
Sbjct: 600 ESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCH 659
Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
+FMKF S II R IILRD NRFHHF+ G CSCKD+W
Sbjct: 660 VFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa] gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1035 bits (2676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/696 (70%), Positives = 583/696 (83%), Gaps = 1/696 (0%)
Query: 1 MKAKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF 60
M +K KLRQAIDTLY+ G A+ E YT+L L+C R +DV+ AKRL+SHM L+ ++PN TF
Sbjct: 1 MNSKLKLRQAIDTLYTNG-PASHECYTRLALECFRASDVDQAKRLKSHMHLHLFKPNDTF 59
Query: 61 LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
+HNRLL+ YAKSG++ +AR LFD+M RD SWNA+LS +A+SG V+DLR +FD MP RD
Sbjct: 60 IHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRD 119
Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
SVSYNT I+GFA G AL VF RMQK+ +PT+YTHVS LNAC QLLDLRRGKQIHG
Sbjct: 120 SVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHG 179
Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
+I++ NLGGNVFV NALTD+YA+ GEID+AR LFDRM RN+V+WNLMISGYLKN QP+K
Sbjct: 180 RIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEK 239
Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
CIDLF EMQ+ L PD+VT S++LGA Q G ID+A ++F I+EKD VCWT MIVG Q
Sbjct: 240 CIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQ 299
Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
NGKEEDAL+LF+EML E+ RPD ++ISSVVSSCAKLASLYHGQVVHGKA ++GV+DDLLV
Sbjct: 300 NGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLV 359
Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
SSAL+DMYCKCGVT DAWT+F+ M TRNVVSWNSMI GYA NGQDLEAL+LY+ +L+ENL
Sbjct: 360 SSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENL 419
Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
KPDS TFV VLSAC+HA L E G+ +F S+S HG+ P+ DHYACM+NL GRS +DKAV
Sbjct: 420 KPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAV 479
Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
DLI S+ +PNSLIW+T+LSVC MKGDIKHGEMAAR L EL P NA PYIMLSNMYAA G
Sbjct: 480 DLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARG 539
Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
RW+DVASIRS MKSK+VKKF+AYSWIEIDN+VHKFV++DRTHP+ +II+ +L++LI+KLQ
Sbjct: 540 RWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQ 599
Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
EAGFSPNT LVLHD E+EK++SI YHSEKLALAY LIKKPHGVTPIRI+KNIR C DCH
Sbjct: 600 EAGFSPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHGVTPIRIIKNIRTCADCH 659
Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
+FMKF S+I R +ILRDSNRFHHFV G CSCKD W
Sbjct: 660 IFMKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g68930-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 992 bits (2565), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/696 (66%), Positives = 571/696 (82%), Gaps = 1/696 (0%)
Query: 1 MKAKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF 60
MKAK LRQ++D L SR AT EAYTQLVL+C R N++ AKRLQSHM+ + ++P +F
Sbjct: 1 MKAKSMLRQSVDLLCSRS-TATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSF 59
Query: 61 LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
LHN+LLH YAK GKL A++LFDKM RD SWNALLSA+A+SGS+Q+L+A FD+MP RD
Sbjct: 60 LHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRD 119
Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
SVSYNT IAGF+ +E+L++F RMQ++ FEPT+YT VS LNA AQLLDLR GKQIHG
Sbjct: 120 SVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHG 179
Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
I+V N GNVF+ NALTDMYAK GEI++ARWLFD + +NLVSWNLMISGY KNGQP+K
Sbjct: 180 SIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEK 239
Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
CI L +M+L G PD+VT+S I+ A Q GR+D+A R+F KEKD VCWT M+VGY +
Sbjct: 240 CIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAK 299
Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
NG+EEDAL+LFNEML E + PD +++SSVVSSCAKLASL+HGQ VHGK+++ G++++LLV
Sbjct: 300 NGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLV 359
Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
SSALIDMY KCG DDA +VFN+MPTRNVVSWN+MI G AQNG D +AL L++ +LQ+
Sbjct: 360 SSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKF 419
Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
KPD+ TF+ +LSACLH + E+GQ +FDSIS HG+TP+LDHYACM+NLLGR+ +++AV
Sbjct: 420 KPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAV 479
Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
LIK++ H P+ LIWSTLLS+C+ KGDI + E+AARHLFEL+P A PYIMLSNMYA+ G
Sbjct: 480 ALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMG 539
Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
RW+DVAS+R+ MKSKNVKKFA +SWIEIDN+VH+F SEDRTHPE+E IYE+L+ LI KLQ
Sbjct: 540 RWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQ 599
Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
E GF+PNT LVLHD E+EK KSIC+HSEKLALA+ LIKKP+G++PIRI+KNIR+C DCH
Sbjct: 600 EEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCH 659
Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
FMKFAS IIGR IILRDSNRFHHF G CSC DNW
Sbjct: 660 EFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/696 (66%), Positives = 571/696 (82%), Gaps = 1/696 (0%)
Query: 1 MKAKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF 60
MKAK LRQ++D L SR AT EAYTQLVL+C R N++ AKRLQSHM+ + ++P +F
Sbjct: 1 MKAKSMLRQSVDLLCSRS-TATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSF 59
Query: 61 LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
LHN+LLH YAK GKL A++LFDKM RDI SWNALLSA+A+SGS+Q+L+A FD+MP RD
Sbjct: 60 LHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRD 119
Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
SVSYNT IAGF+ +E+L++F RMQ++ FEPT+YT VS LNA AQL DLR GKQIHG
Sbjct: 120 SVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHG 179
Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
I+V N GNVF+ NALTDMYAK GEI++ARWLFD + +NLVSWNLMISGY KNGQP+K
Sbjct: 180 SIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEK 239
Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
CI L +M+L G PD+VT+S I+ A Q GR+D+A R+F KEKD VCWT M+VGY +
Sbjct: 240 CIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAK 299
Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
NG+EEDAL+LFNEML E + PD +++SSVVSSCAKLASL+HGQ VHGK+++ G++++LLV
Sbjct: 300 NGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLV 359
Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
SSALIDMY KCG DDA +VFN+MPTRNVVSWN+MI G AQNG D +AL L++ +LQ+
Sbjct: 360 SSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKF 419
Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
KPD+ TF+ +LSACLH + E+GQ +FDSI+ HG+TP+LDHYACM+NLLGR+ +++AV
Sbjct: 420 KPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAV 479
Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
LIK++ H P+ LIWSTLLS+C+ KGDI + E+AARHLFEL+P A PYIMLSNMYA+ G
Sbjct: 480 ALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMG 539
Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
RW+DVAS+R+ MKSKNVKKFA +SWIEIDN+VH+F SEDRTHPE+E IYE+L+ LI KLQ
Sbjct: 540 RWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQ 599
Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
E GF+PNT LVLHD E+EK KSIC+HSEKLALA+ LIKKP+G++PIRI+KNIR+C DCH
Sbjct: 600 EEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCH 659
Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
FMKFAS IIGR IILRDSNRFHHF G CSC DNW
Sbjct: 660 EFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 986 bits (2549), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/696 (66%), Positives = 564/696 (81%), Gaps = 3/696 (0%)
Query: 1 MKAKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF 60
MK K KL QAID LYS G A+ ++ YT+LVL C R ND AKRLQSHM+LN ++P +F
Sbjct: 1 MKVKQKLHQAIDLLYSHGLASFDD-YTRLVLHCARANDFIQAKRLQSHMELNLFQPKDSF 59
Query: 61 LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
+HN+LLH YAK GKL A+++FD M RD+ SWN LLSA+A+ G V++L +FD+MP RD
Sbjct: 60 IHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRD 119
Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
SVSYNT IA FA+ G S +AL+V RMQ+D F+PT Y+HV+AL AC+QLLDLR GKQIHG
Sbjct: 120 SVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHG 179
Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
+IVV +LG N FVRNA+TDMYAK G+IDKAR LFD M ++N+VSWNLMISGY+K G P +
Sbjct: 180 RIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNE 239
Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
CI LF EMQL GL PD VTVSN+L A F+ GR+DDA LF + +KD +CWTTMIVGY Q
Sbjct: 240 CIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQ 299
Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
NG+EEDA +LF +ML +V+PD ++ISS+VSSCAKLASLYHGQVVHGK VV+G+D+ +LV
Sbjct: 300 NGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLV 359
Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
SSAL+DMYCKCGVT DA +F MP RNV++WN+MI GYAQNGQ LEAL LY+++ QEN
Sbjct: 360 SSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENF 419
Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
KPD+ TFV VLSAC++AD+ + GQ +FDSIS HGI P+LDHYACMI LLGRS VDKAV
Sbjct: 420 KPDNITFVGVLSACINADMVKEGQKYFDSISE-HGIAPTLDHYACMITLLGRSGSVDKAV 478
Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
DLI+ +PH+PN IWSTLLSVCA KGD+K+ E+AA HLFEL+P NAGPYIMLSN+YAACG
Sbjct: 479 DLIQGMPHEPNYRIWSTLLSVCA-KGDLKNAELAASHLFELDPRNAGPYIMLSNLYAACG 537
Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
RW+DVA +RS MK KN KKFAAYSW+E+ NKVH+FVSED HPE IY EL++LI LQ
Sbjct: 538 RWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRLISILQ 597
Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
+ G++P+T +VLH+ EEEK +SI YHSEKLALA+ LI+KP+GV PIRI+KNIRVC DCH
Sbjct: 598 QIGYNPDTNIVLHNVGEEEKFRSISYHSEKLALAFALIRKPNGVAPIRIIKNIRVCDDCH 657
Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
+FMKFAS I R II+RDSNRFHHF GG CSC DNW
Sbjct: 658 VFMKFASITISRPIIMRDSNRFHHFFGGKCSCNDNW 693
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255570455|ref|XP_002526186.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223534490|gb|EEF36190.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 299/439 (68%), Positives = 367/439 (83%), Gaps = 3/439 (0%)
Query: 4 KHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHN 63
K++LR+AID+LY+ G AT E YT+L L+C R NDV+ AKRL++HMD + Y+P+ +FL N
Sbjct: 5 KYRLRRAIDSLYTHG-PATHECYTRLALECFRANDVDQAKRLETHMDFHLYQPSDSFLQN 63
Query: 64 RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
RLLH YAK GK+ +AR LFDKM RDI SWNA+LS +A++G V+DLR +FD MP RDSVS
Sbjct: 64 RLLHLYAKLGKISHARYLFDKMSYRDIFSWNAMLSLYAKAGLVEDLRVVFDDMPSRDSVS 123
Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
YNT I GFA G + +A++ F RMQ + F+PT+YTHVS LNAC QLLDLR+GKQIHG+I+
Sbjct: 124 YNTVITGFAKNGRAGKAVEAFVRMQTEGFKPTEYTHVSVLNACTQLLDLRKGKQIHGRIL 183
Query: 184 VGN-LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
GN LGGNVF+ NALTDMYAK EID+ARWLFDR+ N+N+VSWN MISGYLKNGQ + I
Sbjct: 184 TGNYLGGNVFIWNALTDMYAKCKEIDQARWLFDRLANKNMVSWNSMISGYLKNGQFEIGI 243
Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
+LF EMQ LGL PD+VTVSN+L A FQ+G ID A +LF +EKD VCWTTMIVGYTQNG
Sbjct: 244 NLFHEMQGLGLKPDQVTVSNVLCAYFQSGYIDGATKLFSETREKDKVCWTTMIVGYTQNG 303
Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
KEE+AL+LFNEML E+VRPD ++ISSVVSSCAKLASL HGQV+HG A+++G+DDDLLVS+
Sbjct: 304 KEENALMLFNEML-ENVRPDSYTISSVVSSCAKLASLIHGQVIHGIALLMGIDDDLLVST 362
Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
+L+DMYCKCGVT DAW VF+MMP R+VVSWN+M+ GYA+NGQDLEALALY+K+ QEN++P
Sbjct: 363 SLVDMYCKCGVTSDAWVVFSMMPARSVVSWNAMLGGYARNGQDLEALALYEKMFQENIRP 422
Query: 423 DSFTFVSVLSACLHADLFE 441
D+ TFV VLSAC HA LF+
Sbjct: 423 DNITFVGVLSACNHAGLFD 441
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147799436|emb|CAN76870.1| hypothetical protein VITISV_012312 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 279/375 (74%), Positives = 321/375 (85%)
Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
ML E+VRPD F+ISSVVSSCA+LASL GQ VHGKAV+ GVD DLLVSSAL+DMY KCG
Sbjct: 1 MLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGE 60
Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
T DAW VF M TRNV+SWNSMI GYAQNG+DLEALALY+++L ENLKPD+ TFV VLSA
Sbjct: 61 TADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSA 120
Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
C+HA L ERGQ +F SIS +HG P+ DHY+CMINLLGR+ +DKAVDLIKS+ +PN L
Sbjct: 121 CMHAGLVERGQGYFYSISKIHGXNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCL 180
Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
IWSTLLSVC + D+ +GEMAARHLFEL+P NAGPYIMLSN+YAACGRW+DVA++RS MK
Sbjct: 181 IWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMK 240
Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
+ +KKFAAYSWIEID++VHKFV+EDRTH ETE IY++L++LIKKLQE+GF+P+T LVLH
Sbjct: 241 NNKIKKFAAYSWIEIDSQVHKFVAEDRTHSETEQIYDKLNRLIKKLQESGFTPDTNLVLH 300
Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
D EEEK SICYHSEKLALA+ LIKKPHG TPIRIMKNIRVCGDCH+FMKF S II R
Sbjct: 301 DVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIRRP 360
Query: 674 IILRDSNRFHHFVGG 688
IILRD NRFHHFV G
Sbjct: 361 IILRDINRFHHFVEG 375
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/643 (40%), Positives = 390/643 (60%), Gaps = 36/643 (5%)
Query: 89 DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
D+I AL S + + GS+++ R +FD+MP RD VS+N IAG++ G EAL +FS MQ
Sbjct: 154 DVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQ 213
Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
+ +P T VS + CA LL L +GKQIH + + +V V N L +MYAK G ++
Sbjct: 214 VNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVN 273
Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
A LF+RM R++ SWN +I GY N Q + + F MQ+ G+ P+ +T+ ++L AC
Sbjct: 274 TAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACA 333
Query: 268 -------------------FQT---------------GRIDDAGRLFHVIKEKDNVCWTT 293
F++ G ++ A +LF + +K+ V W
Sbjct: 334 HLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNA 393
Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
+I GY+Q+G +AL LF EM ++ ++PD F+I SV+ +CA +L G+ +HG + G
Sbjct: 394 IISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSG 453
Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
+ +++V + L+D+Y KCG + A +F MP ++VVSW +MI Y +G +ALAL+
Sbjct: 454 FESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFS 513
Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
K+ + K D F ++L+AC HA L ++G +F + + +G+ P L+HYAC+++LLGR+
Sbjct: 514 KMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRA 573
Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
+D+A +IK++ +P++ +W LL C + +I+ GE AA+HLFEL+P NAG Y++LS
Sbjct: 574 GHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLS 633
Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
N+YA RWEDVA +R MK K VKK S + + V F+ DRTHP++E IY L
Sbjct: 634 NIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLE 693
Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
L +++++AG+ PNT L L D +EE K + HSEKLA+++ +I G+ PIRIMKN+
Sbjct: 694 ILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGI-PIRIMKNL 752
Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
RVC DCH KF S I+GR II+RD+NRFHH G CSC D W
Sbjct: 753 RVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795
|
Source: Picea sitchensis Species: Picea sitchensis Genus: Picea Family: Pinaceae Order: Coniferales Class: Coniferopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa] gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 281/733 (38%), Positives = 428/733 (58%), Gaps = 73/733 (9%)
Query: 33 CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
C + AK+L + + P T FL+N L++ Y+K G + YAR +FDKMP + S
Sbjct: 15 CCETRNQTQAKKLHCLIIKSLTNPET-FLYNNLINAYSKLGNITYARHVFDKMPQPNSFS 73
Query: 93 WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD-- 150
WN +LSA+++SG + ++ +F MP RD VS+N+ I+G+ G EA++ ++ M KD
Sbjct: 74 WNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGV 133
Query: 151 -RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
++ + L + +DL G+QIHG+IV G VFV ++L DMYAK G +
Sbjct: 134 LNLNRITFSTMLLLVSSQGCVDL--GRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSV 191
Query: 210 ARWLFDRMNNRNLV-------------------------------SWNLMISGYLKNGQP 238
A +FD + RN+V SW MI+G ++NG
Sbjct: 192 ASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLE 251
Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR--------------------- 272
+ +DLF++M+ G+ D+ T ++L AC + G+
Sbjct: 252 AEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSAL 311
Query: 273 ---------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
+ A +F + K+ V WT M+VGY QNG E+A+ +F +M + PD
Sbjct: 312 VDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDD 371
Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
F++ SV+SSCA LASL G H +A+V G+ + VS+ALI +Y KCG +D+ +F+
Sbjct: 372 FTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDE 431
Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
M R+ VSW ++++GYAQ G+ E + L++++L + LKPD+ TF++VLSAC A L ERG
Sbjct: 432 MSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERG 491
Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
Q +F+S+ HGI P DHY CMI+L GR+ +++A + I +P P+S+ W+TLLS C
Sbjct: 492 QQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCR 551
Query: 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAY 563
+ G+ + G+ AA L EL+P N YI+LS++YAA G+W +VA +R M+ K +K +
Sbjct: 552 LYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGF 611
Query: 564 SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKS 623
SWI+ +KV+ F ++D++ P ++ IY EL KL K+ E G+ P+ VLHD ++ EK+K
Sbjct: 612 SWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSEKMKM 671
Query: 624 ICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFH 683
+ +HSEKLA+A+ L+ PHG+ PIR++KN+RVCGDCH K+ S I R I++RD+ RFH
Sbjct: 672 LNHHSEKLAIAFGLLFIPHGL-PIRVVKNLRVCGDCHNATKYISKISQREILVRDAVRFH 730
Query: 684 HFVGGNCSCKDNW 696
F G CSC D W
Sbjct: 731 LFKDGTCSCGDFW 743
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Vitis vinifera] gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 284/744 (38%), Positives = 424/744 (56%), Gaps = 69/744 (9%)
Query: 20 AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79
+++ Y L+ C + AK+L + +P T FL N L+ Y K G L YA
Sbjct: 2 SSSSNYYASLLKLCCESQNQTQAKKLHCLILKTIKQPET-FLSNNLITAYYKLGNLAYAH 60
Query: 80 DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
+FD +P ++ SWN +LS +++ G + ++ +F+ MP RD VS+N AI+G+AN G +
Sbjct: 61 HVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSD 120
Query: 140 ALQVFSRMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
A++V+ M KD T + L C++ + G+QI+G+I+ G +VFV + L
Sbjct: 121 AVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLV 180
Query: 199 DMYAKGGEIDKARWLFDRMNNRNLV-------------------------------SWNL 227
DMY K G I A+ FD M RN+V SW +
Sbjct: 181 DMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTI 240
Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR---------- 272
MI+G ++NG ++ +D+F+EM+L G D+ T ++L AC G+
Sbjct: 241 MITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTD 300
Query: 273 --------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
I A +F + +K+ + WT M+VGY QNG E+A+ +F
Sbjct: 301 HKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFF 360
Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
EM V PD F++ SV+SSCA LASL G H +A+V G+ + VS+ALI +Y KCG
Sbjct: 361 EMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCG 420
Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
T+++ +F M R+ VSW +++ GYAQ G+ E + L++++L LKPD TF+ VLS
Sbjct: 421 STENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLS 480
Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
AC A L E+G +F+S+ HGI P +DH C+I+LLGR+ +++A + I ++P P+
Sbjct: 481 ACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDV 540
Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
+ W+TLLS C + GD++ G+ AA L LEP N Y++LS++YA+ G+W+ VA +R M
Sbjct: 541 VGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGM 600
Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
+ K V+K YSWI+ KVH F ++D++ P IY EL KL K+ E G+ P+ VL
Sbjct: 601 RDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVL 660
Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGR 672
HD +E EK+K + +HSEKLA+A+ LI P G+ PIR++KN+RVCGDCH KF S I R
Sbjct: 661 HDVEESEKIKMLNHHSEKLAIAFGLIFVPPGL-PIRVIKNLRVCGDCHNATKFISKITQR 719
Query: 673 TIILRDSNRFHHFVGGNCSCKDNW 696
I++RD+ RFH F G CSC D W
Sbjct: 720 EILVRDAVRFHLFKDGTCSCGDFW 743
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 696 | ||||||
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.603 | 0.565 | 0.415 | 6.5e-123 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.892 | 0.795 | 0.383 | 1.1e-119 | |
| TAIR|locus:2012295 | 705 | AT1G09410 [Arabidopsis thalian | 0.889 | 0.878 | 0.379 | 1.1e-117 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.896 | 0.627 | 0.373 | 4.7e-116 | |
| TAIR|locus:2097365 | 721 | AT3G49710 "AT3G49710" [Arabido | 0.604 | 0.583 | 0.391 | 2.9e-114 | |
| TAIR|locus:2027554 | 704 | AT1G56690 [Arabidopsis thalian | 0.887 | 0.877 | 0.373 | 1.5e-113 | |
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.622 | 0.5 | 0.331 | 9e-111 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.637 | 0.522 | 0.380 | 2.1e-109 | |
| TAIR|locus:2115130 | 691 | AT4G37170 "AT4G37170" [Arabido | 0.712 | 0.717 | 0.378 | 3.9e-108 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.630 | 0.679 | 0.380 | 1.3e-107 |
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 938 (335.3 bits), Expect = 6.5e-123, Sum P(2) = 6.5e-123
Identities = 175/421 (41%), Positives = 262/421 (62%)
Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
A +F +K+K+ V WT M+VGY Q G+ E+A+ +F +M + PD +++ +S+CA
Sbjct: 324 AKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACAN 383
Query: 336 LASLYHGQVVHGKXXXXXXXXXXXXXXXXXXMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
++SL G HGK +Y KCG DD+ +FN M R+ VSW +M
Sbjct: 384 VSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAM 443
Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
++ YAQ G+ +E + L+DK++Q LKPD T V+SAC A L E+GQ +F +++ +G
Sbjct: 444 VSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYG 503
Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515
I PS+ HY+CMI+L RS +++A+ I +P P+++ W+TLLS C KG+++ G+ AA
Sbjct: 504 IVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAA 563
Query: 516 RHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575
L EL+P + Y +LS++YA+ G+W+ VA +R M+ KNVKK SWI+ K+H F
Sbjct: 564 ESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSF 623
Query: 576 VSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAY 635
++D + P + IY +L +L K+ + G+ P+T V HD +E KVK + YHSE+LA+A+
Sbjct: 624 SADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAF 683
Query: 636 CLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDN 695
LI P G PIR+ KN+RVC DCH K S + GR I++RD+ RFH F G CSC D
Sbjct: 684 GLIFVPSG-QPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDF 742
Query: 696 W 696
W
Sbjct: 743 W 743
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1178 (419.7 bits), Expect = 1.1e-119, P = 1.1e-119
Identities = 243/634 (38%), Positives = 379/634 (59%)
Query: 63 NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
N +L YA++G + AR +FD+MP ++ +SWNALLSA+ ++ +++ LF V
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALV 220
Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
S+N + GF K EA Q F M + + + + AQ + +Q+ +
Sbjct: 221 SWNCLLGGFVKKKKIVEARQFFDSMNVR--DVVSWNTI--ITGYAQSGKIDEARQLFDES 276
Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
V + VF A+ Y + +++AR LFD+M RN VSWN M++GY++ + +
Sbjct: 277 PVQD----VFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAK 332
Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
+LF M ++ T + ++ Q G+I +A LF + ++D V W MI GY+Q+G
Sbjct: 333 ELFDVMPCRNVS----TWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSG 388
Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKXXXXXXXXXXXXXX 362
+AL LF +M E R ++ S SS +S+CA + +L G+ +HG+
Sbjct: 389 HSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGN 448
Query: 363 XXXXMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
MYCKCG ++A +F M +++VSWN+MI GY+++G AL ++ + +E LKP
Sbjct: 449 ALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKP 508
Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
D T V+VLSAC H L ++G+ +F +++ +G+ P+ HYACM++LLGR+ ++ A +L
Sbjct: 509 DDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNL 568
Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542
+K++P +P++ IW TLL + G+ + E AA +F +EP N+G Y++LSN+YA+ GRW
Sbjct: 569 MKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRW 628
Query: 543 EDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
DV +R M+ K VKK YSWIEI NK H F D HPE + I+ L +L ++++A
Sbjct: 629 GDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKA 688
Query: 603 GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLF 662
G+ T +VLHD +EEEK + + YHSE+LA+AY +++ G PIR++KN+RVC DCH
Sbjct: 689 GYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSG-RPIRVIKNLRVCEDCHNA 747
Query: 663 MKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
+K+ + I GR IILRD+NRFHHF G+CSC D W
Sbjct: 748 IKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
|
| TAIR|locus:2012295 AT1G09410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
Identities = 242/638 (37%), Positives = 370/638 (57%)
Query: 63 NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
N L+ Y K+G++ AR +FD MP R+++SW AL+ + +G V +LF KMP ++ V
Sbjct: 83 NGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKV 142
Query: 123 SYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
S+ + GF G +A +++ + KD T H C + G+ +
Sbjct: 143 SWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIH----GLC------KEGRVDEAR 192
Query: 182 IVVGNLGG-NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
+ + +V + Y + +D AR +FD M + VSW M+ GY++NG+ +
Sbjct: 193 EIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIED 252
Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
+LF+ M + + +S LG Q G I A R+F +KE+++ W T+I + +
Sbjct: 253 AEELFEVMPVKPVIACNAMISG-LG---QKGEIAKARRVFDSMKERNDASWQTVIKIHER 308
Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKXXXXXXXXXXXX 360
NG E +AL LF M + VRP ++ S++S CA LASL+HG+ VH +
Sbjct: 309 NGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYV 368
Query: 361 XXXXXXMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL-LQEN 419
MY KCG + +F+ P+++++ WNS+I+GYA +G EAL ++ ++ L +
Sbjct: 369 ASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGS 428
Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
KP+ TFV+ LSAC +A + E G ++S+ +V G+ P HYACM+++LGR+ ++A
Sbjct: 429 TKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEA 488
Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
+++I S+ +P++ +W +LL C + E A+ L E+EP N+G YI+LSNMYA+
Sbjct: 489 MEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQ 548
Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED-RTHPETEIIYEELSKLIKK 598
GRW DVA +R MK++ V+K SW E++NKVH F +HPE E I + L +L
Sbjct: 549 GRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGL 608
Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
L+EAG++P+ LHD EEEKV S+ YHSE+LA+AY L+K G+ PIR+MKN+RVC D
Sbjct: 609 LREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGI-PIRVMKNLRVCSD 667
Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
CH +K S + R IILRD+NRFHHF G CSCKD W
Sbjct: 668 CHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1058 (377.5 bits), Expect = 4.7e-116, Sum P(2) = 4.7e-116
Identities = 244/653 (37%), Positives = 356/653 (54%)
Query: 63 NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD-- 120
N L++ YAK G + AR +F M +D +SWN++++ ++G + + M D
Sbjct: 353 NGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDIL 412
Query: 121 --SVSYNTAIAGFANKGFSREALQVFSRMQKDRFE---------PTDYTHVSALNACAQL 169
S + ++++ A+ +++ Q+ K + T Y LN C ++
Sbjct: 413 PGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKI 472
Query: 170 LD-LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
+ Q+ ++G L + +L + +A +R+ +++S
Sbjct: 473 FSSMPEHDQVSWNSIIGALARS---ERSLPEAVVCFLNAQRAGQKLNRITFSSVLS---A 526
Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-QTGRIDDAGRLFHVIKEK- 286
+S L G+ K I + L DE T N L AC+ + G +D ++F + E+
Sbjct: 527 VSS-LSFGELGKQI---HGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERR 582
Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
DNV W +MI GY N AL L ML R D F ++V+S+ A +A+L G VH
Sbjct: 583 DNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVH 642
Query: 347 GKXXXXXXXXXXXXXXXXXXMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
MY KCG D A FN MP RN SWNSMI+GYA++GQ
Sbjct: 643 ACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGE 702
Query: 407 EALALYDKL-LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
EAL L++ + L PD TFV VLSAC HA L E G HF+S+S +G+ P ++H++C
Sbjct: 703 EALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSC 762
Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH--GEMAARHLFELEP 523
M ++LGR+ ++DK D I+ +P KPN LIW T+L C K G+ AA LF+LEP
Sbjct: 763 MADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEP 822
Query: 524 INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
NA Y++L NMYAA GRWED+ R MK +VKK A YSW+ + + VH FV+ D++HP
Sbjct: 823 ENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHP 882
Query: 584 ETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHG 643
+ ++IY++L +L +K+++AG+ P T L+D ++E K + + YHSEKLA+A+ L +
Sbjct: 883 DADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSS 942
Query: 644 VTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
PIRIMKN+RVCGDCH K+ S I GR IILRDSNRFHHF G CSC D W
Sbjct: 943 TLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
|
|
| TAIR|locus:2097365 AT3G49710 "AT3G49710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 821 (294.1 bits), Expect = 2.9e-114, Sum P(2) = 2.9e-114
Identities = 167/427 (39%), Positives = 249/427 (58%)
Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGK-EEDALILFNEMLSEDVRPDKFSISSVVSSC 333
D+ ++F I D V W TMI GY+ N + E+A+ F +M RPD S V S+C
Sbjct: 296 DSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSAC 355
Query: 334 AKLASLYHGQVVHGKXXXXXX-XXXXXXXXXXXXMYCKCGVTDDAWTVFNMMPTRNVVSW 392
+ L+S + +HG +Y K G DA VF+ MP N VS+
Sbjct: 356 SNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSF 415
Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
N MI GYAQ+G EAL LY ++L + P+ TFV+VLSAC H + GQ +F+++
Sbjct: 416 NCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKE 475
Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
I P +HY+CMI+LLGR+ +++A I ++P+KP S+ W+ LL C ++ E
Sbjct: 476 TFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAE 535
Query: 513 MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572
AA L ++P+ A PY+ML+NMYA +WE++AS+R SM+ K ++K SWIE+ K
Sbjct: 536 RAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKK 595
Query: 573 HKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTK--LVLHDTQEE-EKVKSICYHSE 629
H FV+ED +HP + E L +++KK+++ G+ + K +V D E ++ + +HSE
Sbjct: 596 HVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSE 655
Query: 630 KLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGN 689
KLA+A+ L+ G + ++KN+R+CGDCH +KF S + GR II+RD+ RFH F G
Sbjct: 656 KLAVAFGLMSTRDGEELV-VVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGK 714
Query: 690 CSCKDNW 696
CSC D W
Sbjct: 715 CSCGDYW 721
|
|
| TAIR|locus:2027554 AT1G56690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
Identities = 238/638 (37%), Positives = 364/638 (57%)
Query: 63 NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
N L+ Y K+ + AR++F+ MP R+++SW A++ + + G V + +LF +MP R+ V
Sbjct: 83 NGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEV 142
Query: 123 SYNTAIAGFANKGFSREALQVFSRMQ-KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
S+ G + G +A +++ M KD T+ + L C R G+ +
Sbjct: 143 SWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNM--IGGL--C------REGRVDEAR 192
Query: 182 IVVGNLGG-NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
++ + NV + Y + +D AR LF+ M + VSW M+ GY +G+ +
Sbjct: 193 LIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIED 252
Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
+ F+ M + P V N + F + G I A R+F +++++DN W MI Y
Sbjct: 253 AEEFFEVMPM---KP--VIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYE 307
Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKXXXXXXXXXXX 359
+ G E +AL LF +M + VRP S+ S++S CA LASL +G+ VH
Sbjct: 308 RKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVY 367
Query: 360 XXXXXXXMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
MY KCG A VF+ +++++ WNS+I+GYA +G EAL ++ ++
Sbjct: 368 VASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSG 427
Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
P+ T +++L+AC +A E G F+S+ + +TP+++HY+C +++LGR+ VDKA
Sbjct: 428 TMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKA 487
Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
++LI+S+ KP++ +W LL C + E+AA+ LFE EP NAG Y++LS++ A+
Sbjct: 488 MELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASR 547
Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED-RTHPETEIIYEELSKLIKK 598
+W DVA +R +M++ NV KF SWIE+ KVH F + HPE +I L K
Sbjct: 548 SKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGL 607
Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
L+EAG+SP+ VLHD EEEKV S+ HSE+LA+AY L+K P GV PIR+MKN+RVCGD
Sbjct: 608 LREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGV-PIRVMKNLRVCGD 666
Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
CH +K S + R IILRD+NRFHHF G CSC+D W
Sbjct: 667 CHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
|
|
| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 774 (277.5 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 145/437 (33%), Positives = 251/437 (57%)
Query: 258 VTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
+ +N++ + ID A +FH I K+ + WT++I G N + +ALI +M
Sbjct: 434 IVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQM-KM 492
Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKXXXXXXXXXXXXXXXXXXMYCKCGVTDDA 377
++P+ ++++ +++CA++ +L G+ +H MY +CG + A
Sbjct: 493 TLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTA 552
Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
W+ FN ++V SWN ++ GY++ GQ + L+D++++ ++PD TF+S+L C +
Sbjct: 553 WSQFNSQK-KDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKS 611
Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
+ +G +F + +G+TP+L HYAC+++LLGR+ ++ +A I+ +P P+ +W
Sbjct: 612 QMVRQGLMYFSKMED-YGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGA 670
Query: 498 LLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
LL+ C + I GE++A+H+FEL+ + G YI+L N+YA CG+W +VA +R MK +
Sbjct: 671 LLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGL 730
Query: 558 KKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQE 617
A SW+E+ KVH F+S+D+ HP+T+ I L +K+ E G + ++ D E
Sbjct: 731 TVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDETE 790
Query: 618 EEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILR 677
+ + C HSE+ A+A+ LI G+ PI + KN+ +C +CH +KF S + R I +R
Sbjct: 791 ISRDEIFCGHSERKAIAFGLINTVPGM-PIWVTKNLSMCENCHDTVKFISKTVRREISVR 849
Query: 678 DSNRFHHFVGGNCSCKD 694
D+ FHHF G CSC D
Sbjct: 850 DAEHFHHFKDGECSCGD 866
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 905 (323.6 bits), Expect = 2.1e-109, Sum P(2) = 2.1e-109
Identities = 171/449 (38%), Positives = 263/449 (58%)
Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
GL + ++++ ++ R++DA R F + EK+ V + T + G +N E A L
Sbjct: 403 GLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLL 462
Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKXXXXXXXXXXXXXXXXXXMYCKC 371
+E+ ++ F+ +S++S A + S+ G+ +H + MY KC
Sbjct: 463 SEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKC 522
Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
G D A VFN M RNV+SW SMI G+A++G + L ++++++E +KP+ T+V++L
Sbjct: 523 GSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAIL 582
Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
SAC H L G HF+S+ H I P ++HYACM++LL R+ + A + I ++P + +
Sbjct: 583 SACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQAD 642
Query: 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSS 551
L+W T L C + + + G++AAR + EL+P YI LSN+YA G+WE+ +R
Sbjct: 643 VLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRK 702
Query: 552 MKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLV 611
MK +N+ K SWIE+ +K+HKF D HP IY+EL +LI +++ G+ P+T LV
Sbjct: 703 MKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLV 762
Query: 612 LHDTQEE----EKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFAS 667
LH +EE EK + + HSEK+A+A+ LI P+R+ KN+RVCGDCH MK+ S
Sbjct: 763 LHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKS-RPVRVFKNLRVCGDCHNAMKYIS 821
Query: 668 DIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
+ GR I+LRD NRFHHF G CSC D W
Sbjct: 822 TVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
|
|
| TAIR|locus:2115130 AT4G37170 "AT4G37170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 904 (323.3 bits), Expect = 3.9e-108, Sum P(2) = 3.9e-108
Identities = 193/510 (37%), Positives = 293/510 (57%)
Query: 196 ALTDMYAKGGEIDKARWLFDRM----NNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQ- 249
A+ Y K + ++A L+ M N+R N+ + ++ ++ KCI +E+
Sbjct: 187 AMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAA----AAAVKCIRRGKEIHG 242
Query: 250 ---LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
GL+ DEV S+++ + G ID+A +F I EKD V WT+MI Y ++ + +
Sbjct: 243 HIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWRE 302
Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKXXXXXXXXXXXXXXXXXX 366
LF+E++ RP++++ + V+++CA L + G+ VHG
Sbjct: 303 GFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVD 362
Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
MY KCG + A V + P ++VSW S+I G AQNGQ EAL +D LL+ KPD T
Sbjct: 363 MYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVT 422
Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
FV+VLSAC HA L E+G F SI+ H ++ + DHY C+++LL RS ++ +I +
Sbjct: 423 FVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEM 482
Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVA 546
P KP+ +W+++L C+ G+I E AA+ LF++EP N Y+ ++N+YAA G+WE+
Sbjct: 483 PMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEG 542
Query: 547 SIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSP 606
+R M+ V K SW EI K H F++ D +HP I E L +L KK++E G+ P
Sbjct: 543 KMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVP 602
Query: 607 NTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFA 666
T LVLHD ++E+K +++ YHSEKLA+A+ ++ G T I++ KN+R C DCH +KF
Sbjct: 603 ATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEG-TAIKVFKNLRSCVDCHGAIKFI 661
Query: 667 SDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
S+I R I +RDS RFH F G CSC D W
Sbjct: 662 SNITKRKITVRDSTRFHCFENGQCSCGDYW 691
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 870 (311.3 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 168/441 (38%), Positives = 267/441 (60%)
Query: 257 EVTVSNIL-GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
E+ + N++ + G A LF ++++ V W TMI GY+ NG +DA+ +F EM
Sbjct: 207 EIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK 266
Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKXXXXXXXXXXXXXXXXXXMYCKCGVTD 375
D+RP+ ++ SV+ + ++L SL G+ +H MY KCG+ +
Sbjct: 267 KGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIE 326
Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
A VF +P NV++W++MING+A +GQ +A+ + K+ Q ++P ++++L+AC
Sbjct: 327 KAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACS 386
Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
H L E G+ +F + +V G+ P ++HY CM++LLGRS +D+A + I ++P KP+ +IW
Sbjct: 387 HGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIW 446
Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
LL C M+G+++ G+ A L ++ P ++G Y+ LSNMYA+ G W +V+ +R MK K
Sbjct: 447 KALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEK 506
Query: 556 NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDT 615
+++K S I+ID +H+FV ED +HP+ + I L ++ KL+ AG+ P T VL +
Sbjct: 507 DIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNL 566
Query: 616 QEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTII 675
+EE+K + YHSEK+A A+ LI G PIRI+KN+R+C DCH +K S + R I
Sbjct: 567 EEEDKENVLHYHSEKIATAFGLISTSPG-KPIRIVKNLRICEDCHSSIKLISKVYKRKIT 625
Query: 676 LRDSNRFHHFVGGNCSCKDNW 696
+RD RFHHF G+CSC D W
Sbjct: 626 VRDRKRFHHFQDGSCSCMDYW 646
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00016683001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (695 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 696 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-160 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-142 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-74 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-48 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-35 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-29 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-29 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-19 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 1e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 482 bits (1241), Expect = e-160
Identities = 219/641 (34%), Positives = 365/641 (56%), Gaps = 39/641 (6%)
Query: 89 DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
D+ NAL++ + + G V R +FD+MP RD +S+N I+G+ G E L++F M+
Sbjct: 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR 280
Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
+ +P T S ++AC L D R G+++HG +V +V V N+L MY G
Sbjct: 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340
Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
+A +F RM ++ VSW MISGY KNG P K ++ + M+ ++PDE+T++++L AC
Sbjct: 341 EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400
Query: 269 QTG-----------------------------------RIDDAGRLFHVIKEKDNVCWTT 293
G ID A +FH I EKD + WT+
Sbjct: 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS 460
Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
+I G N + +ALI F +ML ++P+ ++ + +S+CA++ +L G+ +H + G
Sbjct: 461 IIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519
Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
+ D + +AL+D+Y +CG + AW FN ++VVSWN ++ GY +G+ A+ L++
Sbjct: 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFN 578
Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
++++ + PD TF+S+L AC + + +G +F S+ + ITP+L HYAC+++LLGR+
Sbjct: 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638
Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
+ +A + I +P P+ +W LL+ C + ++ GE+AA+H+FEL+P + G YI+L
Sbjct: 639 GKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLC 698
Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
N+YA G+W++VA +R +M+ + SW+E+ KVH F+++D +HP+ + I L
Sbjct: 699 NLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLE 758
Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
+K++ +G + + + + E K C HSE+LA+A+ LI G PI + KN+
Sbjct: 759 GFYEKMKASGLAGSESSSMDEI-EVSKDDIFCGHSERLAIAFGLINTVPG-MPIWVTKNL 816
Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
+C +CH +KF S I+ R I +RD+ +FHHF G CSC D
Sbjct: 817 YMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 432 bits (1112), Expect = e-142
Identities = 207/623 (33%), Positives = 331/623 (53%), Gaps = 38/623 (6%)
Query: 111 ALFDKMPIRDS-VSYNTAIAGFANKGFSREALQVFSRMQ-KDRFEPTDYTHVSALNACAQ 168
A D IR S VS + I G REAL++F ++ F T+ + + AC
Sbjct: 76 ARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIA 135
Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
L +R K ++ + + ++ N + M+ K G + AR LFD M RNL SW +
Sbjct: 136 LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTI 195
Query: 229 ISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNI---------------------LGA 266
I G + G ++ LF+EM + V + G
Sbjct: 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255
Query: 267 CFQT-------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
T G I+DA +F + EK V W +M+ GY +G E+AL L+ E
Sbjct: 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYE 315
Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
M V D+F+ S ++ ++LA L H + H + G D++ ++AL+D+Y K G
Sbjct: 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375
Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
+DA VF+ MP +N++SWN++I GY +G+ +A+ ++++++ E + P+ TF++VLSA
Sbjct: 376 MEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
C ++ L E+G F S+S H I P HYACMI LLGR +D+A +I+ P KP
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN 495
Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
+W+ LL+ C + +++ G +AA L+ + P Y++L N+Y + GR + A + ++K
Sbjct: 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555
Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
K + A +WIE+ + H F S DR HP++ IY++L +L+K++ E G+ +L
Sbjct: 556 RKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLP 615
Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
D E+E+ S YHSEKLA+A+ LI TP++I ++ R+C DCH +KF + + R
Sbjct: 616 DVDEDEEKVSGRYHSEKLAIAFGLINTSEW-TPLQITQSHRICKDCHKVIKFIALVTKRE 674
Query: 674 IILRDSNRFHHFVGGNCSCKDNW 696
I++RD++RFHHF G CSC D W
Sbjct: 675 IVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 257 bits (657), Expect = 1e-74
Identities = 133/376 (35%), Positives = 202/376 (53%), Gaps = 36/376 (9%)
Query: 94 NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
NA+LS R G + +F KMP RD S+N + G+A G+ EAL ++ RM
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
P YT L C + DL RG+++H +V +V V NAL MY K G++ AR +
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
FDRM R+ +SWN MISGY +NG+ + ++LF M+ L ++PD +T+++++ AC
Sbjct: 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304
Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
G +A ++F ++ KD V WT MI GY
Sbjct: 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364
Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
+NG + AL + M ++V PD+ +I+SV+S+CA L L G +H A G+ +
Sbjct: 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424
Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
+V++ALI+MY KC D A VF+ +P ++V+SW S+I G N + EAL + ++L
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL- 483
Query: 419 NLKPDSFTFVSVLSAC 434
LKP+S T ++ LSAC
Sbjct: 484 TLKPNSVTLIAALSAC 499
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 5e-48
Identities = 110/412 (26%), Positives = 193/412 (46%), Gaps = 39/412 (9%)
Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
N+ + + G +AL++ MQ+ R + +V+ C + G ++ + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
+ V + NA+ M+ + GE+ A ++F +M R+L SWN+++ GY K G + + L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 245 FQEMQLLGLNPDEVTVSNILGAC-----------------------------------FQ 269
+ M G+ PD T +L C +
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
G + A +F + +D + W MI GY +NG+ + L LF M V PD +I+SV
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
+S+C L G+ +HG V G D+ V ++LI MY G +A VF+ M T++
Sbjct: 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354
Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFD 448
VSW +MI+GY +NG +AL Y + Q+N+ PD T SVLSAC + G + H
Sbjct: 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414
Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
+ G+ + +I + + +DKA+++ ++P K + + W+++++
Sbjct: 415 AERK--GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIA 463
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 3e-35
Identities = 96/340 (28%), Positives = 158/340 (46%), Gaps = 55/340 (16%)
Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
G + A +F + E+D W ++ GY + G ++AL L++ ML VRPD ++ V+
Sbjct: 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194
Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
+C + L G+ VH V G + D+ V +ALI MY KCG A VF+ MP R+ +
Sbjct: 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCI 254
Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-----------LHADL 439
SWN+MI+GY +NG+ LE L L+ + + ++ PD T SV+SAC +H +
Sbjct: 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314
Query: 440 FERGQNHFD-SISAVHGITP---SLDH------------------YACMINLLGRSSDVD 477
+ G F +S + + SL + MI+ ++ D
Sbjct: 315 VKTG---FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPD 371
Query: 478 KAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG--PYIML 532
KA++ + P+ + +++LS CA GD+ G L EL G Y+++
Sbjct: 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK----LHEL-AERKGLISYVVV 426
Query: 533 SN----MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
+N MY+ C + + ++ K+V SW I
Sbjct: 427 ANALIEMYSKCKCIDKALEVFHNIPEKDV-----ISWTSI 461
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-29
Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 31/227 (13%)
Query: 59 TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
TF+ L+ Y+K G + AR +FD MP + ++WN++
Sbjct: 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSM---------------------- 296
Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
+AG+A G+S EAL ++ M+ +T + ++L L KQ
Sbjct: 297 ---------LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347
Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
H ++ ++ AL D+Y+K G ++ AR +FDRM +NL+SWN +I+GY +G+
Sbjct: 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRG 407
Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
K +++F+ M G+ P+ VT +L AC +G + +F + E
Sbjct: 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 6e-29
Identities = 84/331 (25%), Positives = 154/331 (46%), Gaps = 50/331 (15%)
Query: 63 NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
N L+ Y+K + A ++F +P +D+ISW ++
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI-------------------------- 461
Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
IAG EAL F +M +P T ++AL+ACA++ L GK+IH +
Sbjct: 462 -----IAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHV 515
Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
+ +G + F+ NAL D+Y + G ++ A W + +++VSWN++++GY+ +G+ +
Sbjct: 516 LRTGIGFDGFLPNALLDLYVRCGRMNYA-WNQFNSHEKDVVSWNILLTGYVAHGKGSMAV 574
Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVG 297
+LF M G+NPDEVT ++L AC ++G + FH ++EK ++ + ++
Sbjct: 575 ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634
Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK---AVVLGV 354
+ GK +A N+M + PD +++++C H V G+ + +
Sbjct: 635 LGRAGKLTEAYNFINKM---PITPDPAVWGALLNACR-----IHRHVELGELAAQHIFEL 686
Query: 355 D-DDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
D + + L ++Y G D+ V M
Sbjct: 687 DPNSVGYYILLCNLYADAGKWDEVARVRKTM 717
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 1e-19
Identities = 69/298 (23%), Positives = 123/298 (41%), Gaps = 38/298 (12%)
Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
+G+ E AL L M V D+ + ++ C ++ G V +A+ + +
Sbjct: 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRL 123
Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
+A++ M+ + G AW VF MP R++ SWN ++ GYA+ G EAL LY ++L +
Sbjct: 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183
Query: 421 KPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
+PD +TF VL C RG+ H + G +D +I + + DV A
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVR--FGFELDVDVVNALITMYVKCGDVVSA 241
Query: 480 VDLIKSLPHK----------------------------------PNSLIWSTLLSVCAMK 505
+ +P + P+ + ++++S C +
Sbjct: 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301
Query: 506 GDIKHG-EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
GD + G EM + ++ L MY + G W + + S M++K+ + A
Sbjct: 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 1e-19
Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 22/128 (17%)
Query: 564 SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKV-- 621
W E K +S D +HP + +L ++++ G P TK + HD EE
Sbjct: 4 VWSEG----KKTLSGDGSHPTS------KEELFQRIKVEGVVPETKEIGHDVDAEEFRDN 53
Query: 622 ----KSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILR 677
K + H+EK ALAY L+ T I R+CGDCH F ++ + GR II+R
Sbjct: 54 GIKGKLLASHAEKQALAYGLL------TTRIIKVLKRMCGDCHEFFRYIAKYTGREIIVR 107
Query: 678 DSNRFHHF 685
D +RFHHF
Sbjct: 108 DPSRFHHF 115
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 6e-13
Identities = 70/324 (21%), Positives = 143/324 (44%), Gaps = 30/324 (9%)
Query: 202 AKGGEIDKARWLFDRMNNR----NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
AK G++D +F M N N+ ++ +I G + GQ K + M+ + PD
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542
Query: 258 VTVSNILGACFQTGRIDDAGRLFHVIKE---------KDNVCWTTMIVGYTQNGKEEDAL 308
V + ++ AC Q+G +D R F V+ E D++ ++ G+ + A
Sbjct: 543 VVFNALISACGQSGAVD---RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599
Query: 309 ILFNEMLSEDVR--PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
++ + +++ P+ ++I V+SC++ ++ GV D + SAL+D
Sbjct: 600 EVYQMIHEYNIKGTPEVYTI--AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
Query: 367 MYCKCGVTDDAWTVFNMMPTRNV----VSWNSMINGYAQNGQDLE-ALALYDKLLQENLK 421
+ G D A+ + + + VS++S++ G N ++ + AL LY+ + L+
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM-GACSNAKNWKKALELYEDIKSIKLR 716
Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
P T ++++A + + + + G+ P+ Y+ ++ R D D +D
Sbjct: 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKDDADVGLD 775
Query: 482 LI---KSLPHKPNSLIWSTLLSVC 502
L+ K KPN ++ + +C
Sbjct: 776 LLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-11
Identities = 92/483 (19%), Positives = 187/483 (38%), Gaps = 103/483 (21%)
Query: 56 PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWN-----ALLSAHARSGSVQDLR 110
P +NRLL + G++ DL + M R ++ + A + +V++
Sbjct: 371 PEYIDAYNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAF 426
Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
+ ++N ++ A+ AL+V +Q+ + + + ++ CA
Sbjct: 427 RFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA--- 483
Query: 171 DLRRGK-----QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL--- 222
+ GK ++ ++V + NV AL D A+ G++ KA + M ++N+
Sbjct: 484 --KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541
Query: 223 -VSWNLMISGYLKNGQPKKCIDLFQEM--QLLGLNPDEVTVSNILGACFQTGRIDDAGRL 279
V +N +IS ++G + D+ EM + ++PD +TV ++ AC G++D A +
Sbjct: 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601
Query: 280 FHVIKEKD----NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
+ +I E + +T + +Q G + AL ++++M + V+PD+
Sbjct: 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE------------ 649
Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV----VS 391
+ SAL+D+ G D A+ + + + VS
Sbjct: 650 -----------------------VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686
Query: 392 WNSMINGYAQNGQDLE-ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
++S++ G N ++ + AL LY+ + L+P T ++++A + + +
Sbjct: 687 YSSLM-GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
K L PN++ +S LL K D
Sbjct: 746 ---------------------------------KRLGLCPNTITYSILLVASERKDDADV 772
Query: 511 GEM 513
G
Sbjct: 773 GLD 775
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 2e-10
Identities = 14/47 (29%), Positives = 33/47 (70%)
Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
+VV++N++I+GY + G+ EAL L++++ + +KP+ +T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-10
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
++V++N +I GY K G+ ++ + LF EM+ G+ P+ T S ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 4e-09
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168
D V+YNT I G+ KG EAL++F+ M+K +P YT+ ++ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 70/349 (20%), Positives = 150/349 (42%), Gaps = 29/349 (8%)
Query: 8 RQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNT-TFLHNRLL 66
+ + + G A + YT L+ C + V+ + M E N TF L+
Sbjct: 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF--GALI 514
Query: 67 HFYAKSGKLFYARDLFDKMPLRDI----ISWNALLSAHARSGSVQDLRALFDKM------ 116
A++G++ A + M +++ + +NAL+SA +SG+V RA FD +
Sbjct: 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD--RA-FDVLAEMKAE 571
Query: 117 --PIR-DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
PI D ++ + AN G A +V+ + + + T + A+N+C+Q D
Sbjct: 572 THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631
Query: 174 RGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL----VSWNLM 228
I+ + G VF +AL D+ G++DKA + + + VS++ +
Sbjct: 632 FALSIYDDMKKKGVKPDEVFF-SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690
Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE--- 285
+ KK ++L+++++ + L P T++ ++ A + ++ A + +K
Sbjct: 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750
Query: 286 -KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
+ + ++ ++V + + L L ++ + ++P+ + C
Sbjct: 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 4e-08
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
D V + T+I GY + GK E+AL LFNEM ++P+ ++ S ++ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 5e-07
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
V++N +ISGY K G+ ++ ++LF+EM+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 5e-06
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
V++N +I G K G+ ++ ++LF+EM+ G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 9e-06
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTR----NVVSWNSMINGYAQ 401
LID YCK G ++A +FN M R NV +++ +I+G +
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 60 FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM--- 116
FL N LL Y + G++ YA + F+ +D++SWN LL+ + G LF++M
Sbjct: 525 FLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583
Query: 117 ---PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL- 172
P D V++ + + + G + L+ F M++ Y+ L A ++DL
Sbjct: 584 GVNP--DEVTFISLLCACSRSGMVTQGLEYFHSMEE------KYSITPNLKHYACVVDLL 635
Query: 173 -RRGK 176
R GK
Sbjct: 636 GRAGK 640
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 89 DIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSYNTAIAGFAN 133
D++++N L+ + + G V++ LF++M R + +Y+ I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
V + ++I GY + GK E+AL LF EM + V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENL 420
V++NS+I+GY + G+ EAL L+ ++ ++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
V++N++I+G + G+ EAL L+ ++ + ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD 156
V+YNT I G G EAL++F M++ EP
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
V + T+I G + G+ E+AL LF EM + PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
V+YN+ I+G+ G EAL++F M++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNR----NLVSWNLMISGYLK 234
+V N L D Y K G++++A LF+ M R N+ +++++I G K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-FQTGRIDDAGRLFH-- 281
+ + Y K G + ++ ++ + L L+PD L A ++ G+ ++A +
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYE--KALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 282 -VIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
+ + + + + Y + GK E+AL + +
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEK 93
|
Length = 100 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
L ++N ++ K G P + + +EM+ GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.003
Identities = 18/85 (21%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 200 MYAKGGEIDKARWLFDR---MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
+Y K G+ D+A +++ ++ N ++ + + Y K G+ ++ ++ ++ + L L+PD
Sbjct: 9 LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYE--KALELDPD 66
Query: 257 EVTVSNILG-ACFQTGRIDDAGRLF 280
LG A ++ G+ ++A +
Sbjct: 67 NAKAYYNLGLAYYKLGKYEEALEAY 91
|
Length = 100 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 696 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.66 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.59 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.55 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.52 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.5 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.45 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.45 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.43 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.43 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.42 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.41 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.39 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.38 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.38 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.36 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.34 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.33 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.28 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.26 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.25 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.25 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.24 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.21 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.19 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.13 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.13 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.11 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.09 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.07 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.05 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.04 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.04 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.03 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.01 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.01 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.0 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.99 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.98 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.98 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.9 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.89 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.87 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.84 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.83 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.81 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.76 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.76 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.75 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.75 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.73 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.73 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.72 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.7 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.7 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.69 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.68 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.66 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.63 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.54 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.47 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.45 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.45 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.45 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.43 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.38 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.38 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.33 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.33 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.32 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.28 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.28 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.28 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.27 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.24 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.19 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.13 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.12 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.12 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.09 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.09 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.08 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.07 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.04 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.04 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.04 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.01 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.99 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.92 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.91 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.91 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.88 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.86 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.83 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.82 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.79 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.74 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.72 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.7 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.69 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.67 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.67 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.65 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.64 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.63 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.61 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.61 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.6 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.57 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.51 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.5 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.5 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.48 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.47 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.44 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.42 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.41 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.4 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.38 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.36 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.36 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.35 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.33 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.28 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.23 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.22 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.2 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.18 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.18 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.15 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.13 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.1 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.01 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.93 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.93 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.93 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.9 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.9 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.86 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.83 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.82 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.81 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.81 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.79 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.79 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.78 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.77 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.76 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.76 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.73 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.72 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.71 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.7 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.65 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.63 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.61 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.56 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.53 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.52 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.39 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.38 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.37 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.3 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.26 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.23 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.2 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.16 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.14 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.04 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.01 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.83 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.77 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.67 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.48 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.47 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.42 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.31 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.08 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.08 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.96 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.94 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.93 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.89 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.88 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.76 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.73 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.67 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.47 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.39 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.32 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.31 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.24 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.2 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.11 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.1 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.1 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.1 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.1 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.09 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.85 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.85 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.81 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.68 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.61 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.54 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.11 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.09 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.08 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.63 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.62 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.56 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.51 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.36 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.29 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.27 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.27 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.25 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.13 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.01 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.94 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.59 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.16 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.95 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.9 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.55 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.53 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.96 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.73 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.47 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.26 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.25 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.94 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.79 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.56 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.45 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.4 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 88.19 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.87 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.72 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.56 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.31 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.3 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 87.01 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.93 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 86.78 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.72 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.32 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.15 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 85.11 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.74 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 84.69 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.68 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.24 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 84.18 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 83.7 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.67 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 83.64 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 83.21 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.1 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 82.9 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.83 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 82.62 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.25 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.23 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 82.16 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 81.41 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.4 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.87 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 80.6 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 80.3 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-133 Score=1144.02 Aligned_cols=685 Identities=34% Similarity=0.660 Sum_probs=648.7
Q ss_pred hhHHHHHHHHHHHcCCCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcc-cHHHHHHHHHHccCChHHHHHHH
Q 005454 4 KHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT-FLHNRLLHFYAKSGKLFYARDLF 82 (696)
Q Consensus 4 ~~~~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~ 82 (696)
..++.++++.|...|++|+..+|..++++|. ..+....+.+++..+.+.++.++ .++|+|+.+|++.|+++.|.++|
T Consensus 67 ~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f 144 (857)
T PLN03077 67 LEQALKLLESMQELRVPVDEDAYVALFRLCE--WKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVF 144 (857)
T ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHh--hCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHH
Confidence 4567788899999999999999999999998 66778888888888888877766 77777777777777777777777
Q ss_pred ccCCCCCcc----------------------------------------------------------------------h
Q 005454 83 DKMPLRDII----------------------------------------------------------------------S 92 (696)
Q Consensus 83 ~~~~~~~~~----------------------------------------------------------------------~ 92 (696)
++|++||++ +
T Consensus 145 ~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (857)
T PLN03077 145 GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224 (857)
T ss_pred hcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccch
Confidence 777654333 3
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCh
Q 005454 93 WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172 (696)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 172 (696)
+|+||.+|+++|++++|.++|++|+.+|.++||+||.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|++.|++
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 45566677777888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 005454 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252 (696)
Q Consensus 173 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 252 (696)
+.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..||+++||+||.+|++.|++++|+++|++|.+.|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHH-----------------------------------HHHhcCCHHHHHHHHHhccCCChhHHHHHHHH
Q 005454 253 LNPDEVTVSNILG-----------------------------------ACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297 (696)
Q Consensus 253 ~~p~~~t~~~ll~-----------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 297 (696)
+.||..||+.++. +|+++|++++|.++|++|.++|+++|+++|.+
T Consensus 385 ~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~ 464 (857)
T PLN03077 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG 464 (857)
T ss_pred CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 9998887766655 48889999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHH
Q 005454 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377 (696)
Q Consensus 298 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 377 (696)
|+++|+.++|+++|++|.. +++||..||..++.+|++.|+++.+.++|..+.+.|+.+|..++|+|+++|+++|++++|
T Consensus 465 ~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 465 LRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 9999999999999999986 599999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCC
Q 005454 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457 (696)
Q Consensus 378 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 457 (696)
.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+.+|+.
T Consensus 544 ~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 544 WNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred HHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999778999
Q ss_pred CChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 458 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
|+..+|++|+++|++.|++++|.+++++|+.+||..+|++|+.+|+.+|+.+.|+.+.+++++++|+++..|..|+++|+
T Consensus 623 P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCcCCCCccccccch
Q 005454 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQE 617 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~~ 617 (696)
..|+|++|.++++.|+++|++|.||+|||++++++|.|.+||.+||+.++||..|++|..+|++.||+||+..++ +++|
T Consensus 703 ~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~ 781 (857)
T PLN03077 703 DAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIE 781 (857)
T ss_pred HCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988 5588
Q ss_pred hHHhhhhhhhhHHHHHHhhhccCCCCCCcEEEEecccccCchhHHHHHHhhhcCceEEEecCCccccccCCccCCCC
Q 005454 618 EEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694 (696)
Q Consensus 618 ~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~kn~~~c~~ch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~csc~~ 694 (696)
++|+..|++||||||+|||||+||+| +||||+||||||+|||+++||||+++||||||||++|||||+||+|||||
T Consensus 782 ~~k~~~~~~hse~la~a~~l~~~~~~-~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 782 VSKDDIFCGHSERLAIAFGLINTVPG-MPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHHHhccHHHHHHHhhhcCCCC-CeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-123 Score=1040.79 Aligned_cols=609 Identities=34% Similarity=0.598 Sum_probs=575.2
Q ss_pred CCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccC-CCcc-cHHHHHHHHHHccCChHHHHHHHccCC----CCCcch
Q 005454 19 QAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYE-PNTT-FLHNRLLHFYAKSGKLFYARDLFDKMP----LRDIIS 92 (696)
Q Consensus 19 ~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~ 92 (696)
..++..+++.++.++. ..++...|+.++..+...+ +.++ .+|+.++.+|++.++++.|.+++..|. .||+.+
T Consensus 83 ~~~~~~~~~~~i~~l~--~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~ 160 (697)
T PLN03081 83 IRKSGVSLCSQIEKLV--ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160 (697)
T ss_pred CCCCceeHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHH
Confidence 3445568999999999 7889999999999888765 5667 999999999999999999999999986 479999
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCh
Q 005454 93 WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172 (696)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 172 (696)
||.|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 005454 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252 (696)
Q Consensus 173 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 252 (696)
+.+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999888888888888887777777777665
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHH
Q 005454 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332 (696)
Q Consensus 253 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 332 (696)
+.| |..||++++.+
T Consensus 321 ~~p------------------------------------------------------------------d~~t~~~ll~a 334 (697)
T PLN03081 321 VSI------------------------------------------------------------------DQFTFSIMIRI 334 (697)
T ss_pred CCC------------------------------------------------------------------CHHHHHHHHHH
Confidence 554 44455555555
Q ss_pred HHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHH
Q 005454 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412 (696)
Q Consensus 333 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 412 (696)
|++.|+++.|.++|..+.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf 414 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMF 414 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHH
Confidence 55556666666666667777777888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCH
Q 005454 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492 (696)
Q Consensus 413 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 492 (696)
++|.+.|+.||.+||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|.+++++++.+|+.
T Consensus 415 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~ 494 (697)
T PLN03081 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV 494 (697)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEE
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~ 572 (696)
.+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|++|.||+|||++++++
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~ 574 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQD 574 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcccHHHHHHHHHHHHHHHHcCCcCCCCccccccchhHHhhhhhhhhHHHHHHhhhccCCCCCCcEEEEec
Q 005454 573 HKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652 (696)
Q Consensus 573 ~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~kn 652 (696)
|.|.+||.+||+.++||..+.++..+|++.||+||+.+++|++++++|+..|++||||||+|||||++|+| +||||+||
T Consensus 575 ~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~-~~i~i~kn 653 (697)
T PLN03081 575 HSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEW-TPLQITQS 653 (697)
T ss_pred EEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCC-CeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccccCchhHHHHHHhhhcCceEEEecCCccccccCCccCCCCCC
Q 005454 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696 (696)
Q Consensus 653 ~~~c~~ch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~csc~~~w 696 (696)
||||+|||+++||||+++||||||||++|||||+||+|||||||
T Consensus 654 lr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 654 HRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-75 Score=666.01 Aligned_cols=646 Identities=26% Similarity=0.373 Sum_probs=558.4
Q ss_pred CCCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcc-cHHHHHHHHHHccCChHHHHHHHccCC----CCCcch
Q 005454 18 GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT-FLHNRLLHFYAKSGKLFYARDLFDKMP----LRDIIS 92 (696)
Q Consensus 18 g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~ 92 (696)
..+|+..+++.++.+++ ..+....|..++..+...|++++ .+|..++..|.+.+.++.|.+++..+. .+++..
T Consensus 46 ~~~~~~~~~n~~i~~l~--~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 123 (857)
T PLN03077 46 SSSSSTHDSNSQLRALC--SHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRL 123 (857)
T ss_pred hcccchhhHHHHHHHHH--hCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchH
Confidence 35678889999999999 88899999999999999999888 999999999999999999999998765 358899
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCh
Q 005454 93 WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172 (696)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 172 (696)
+|+||++|+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||++++.+|+..+++
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 005454 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252 (696)
Q Consensus 173 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 252 (696)
+.+.+++..+.+.|+.||..++|+|+++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.+.|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcchHHHHH-----------------------------------HHHHhcCCHHHHHHHHHhccCCChhHHHHHHHH
Q 005454 253 LNPDEVTVSNIL-----------------------------------GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297 (696)
Q Consensus 253 ~~p~~~t~~~ll-----------------------------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 297 (696)
+.||..||+.++ .+|+++|++++|.++|++|.++|.++||++|.+
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~ 363 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHH
Confidence 877766665555 458889999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHH
Q 005454 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377 (696)
Q Consensus 298 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 377 (696)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++++|+++|+++|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCC
Q 005454 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457 (696)
Q Consensus 378 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 457 (696)
.++|++|.++|+++||+||.+|++.|+.++|+++|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+ .|+.
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~ 521 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIG 521 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCC
Confidence 9999999999999999999999999999999999999986 5999999999999999999999999999999998 4999
Q ss_pred CChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCchHHHHHHHH
Q 005454 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE-PINAGPYIMLSNMY 536 (696)
Q Consensus 458 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~ 536 (696)
|+..++++|+++|.++|++++|.++|+.+ +||..+|++++.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 99999999999999999999999999998 8999999999999999999999999999999866 44788999999999
Q ss_pred hhcCChhHHHHHHHHhh-hCCCcCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCcCCCCcccccc
Q 005454 537 AACGRWEDVASIRSSMK-SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDT 615 (696)
Q Consensus 537 ~~~g~~~~A~~~~~~m~-~~~~~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~ 615 (696)
++.|++++|.++|+.|. +.|+.|.....- ..+..+... . .+++..+.+++.+..||...|..-+
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~----~lv~~l~r~----G-------~~~eA~~~~~~m~~~pd~~~~~aLl 664 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYA----CVVDLLGRA----G-------KLTEAYNFINKMPITPDPAVWGALL 664 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHH----HHHHHHHhC----C-------CHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 99999999999999998 678766432110 000001000 0 1233333444456788876652111
Q ss_pred chhHHhhhhhhhh---HHHHHHhhhccCCCCCCcEEE-Eecc-cccCchhHHHHHHhhh--------cCceEEEecCCcc
Q 005454 616 QEEEKVKSICYHS---EKLALAYCLIKKPHGVTPIRI-MKNI-RVCGDCHLFMKFASDI--------IGRTIILRDSNRF 682 (696)
Q Consensus 616 ~~~~~~~~~~~hs---e~la~~~~~~~~~~~~~~~~~-~kn~-~~c~~ch~~~k~~s~~--------~~r~i~~rd~~~~ 682 (696)
.-.. ..... |+.| --++...|......+ +-|+ --.++...+.+....+ .|+.+|.- .+..
T Consensus 665 ~ac~----~~~~~e~~e~~a--~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~-~~~~ 737 (857)
T PLN03077 665 NACR----IHRHVELGELAA--QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV-KGKV 737 (857)
T ss_pred HHHH----HcCChHHHHHHH--HHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE-CCEE
Confidence 1000 00001 1111 112222333122332 2343 3457788888887755 56666543 3688
Q ss_pred ccccCCccC
Q 005454 683 HHFVGGNCS 691 (696)
Q Consensus 683 h~f~~g~cs 691 (696)
|-|..|--|
T Consensus 738 ~~f~~~d~~ 746 (857)
T PLN03077 738 HAFLTDDES 746 (857)
T ss_pred EEEecCCCC
Confidence 999766544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-66 Score=578.62 Aligned_cols=500 Identities=18% Similarity=0.236 Sum_probs=464.6
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCCCCc-----chHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhC
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPLRDI-----ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK 134 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 134 (696)
..|..++..|++.|++++|.++|+.|..++. ..++.++..|.+.|.+++|.++|+.|+.||..+|+.+|.+|++.
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASS 450 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 7788899999999999999999999987654 45567788899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHH
Q 005454 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214 (696)
Q Consensus 135 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 214 (696)
|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||++|++.|++++|.++|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHH--cCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC---
Q 005454 215 DRMNN----RNLVSWNLMISGYLKNGQPKKCIDLFQEMQL--LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE--- 285 (696)
Q Consensus 215 ~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--- 285 (696)
+.|.. ||.++||.||.+|++.|++++|.++|++|.. .|+.||..||+.++.+|++.|++++|.++|+.|.+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99964 8999999999999999999999999999986 68999999999999999999999999999999985
Q ss_pred -CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHH
Q 005454 286 -KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364 (696)
Q Consensus 286 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 364 (696)
++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHhcCChHHHHHHHhcCC----CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcH
Q 005454 365 IDMYCKCGVTDDAWTVFNMMP----TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440 (696)
Q Consensus 365 i~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 440 (696)
|++|+++|++++|.++|++|. .||+.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 999999999999999999995 6899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHhhCCCCChHHHHHHHHHHh----ccC-------------------CHHHHHHHHHhCC---CCCCHHH
Q 005454 441 ERGQNHFDSISAVHGITPSLDHYACMINLLG----RSS-------------------DVDKAVDLIKSLP---HKPNSLI 494 (696)
Q Consensus 441 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~~~---~~p~~~~ 494 (696)
++|.++|..|.+. |+.||..+|+++++++. +++ ..++|..+|++|. ..||..+
T Consensus 771 e~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 771 DVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 9999999999885 99999999999998743 222 2367888998874 4699999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCc
Q 005454 495 WSTLLSVCAMKGDIKHGEMAARHLFEL-EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562 (696)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 562 (696)
|+.++.++...+..+.+..+++.+... .+++..+|..|++.+.+. .++|..++++|...|+.+...
T Consensus 850 ~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 850 LSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999998888888888888888776433 366778899999987332 368999999999999987654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=551.56 Aligned_cols=499 Identities=15% Similarity=0.198 Sum_probs=469.7
Q ss_pred CCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCC-cc-cHHHHHHHHHHccCChHHHHHHHccCCCCCcchHHHH
Q 005454 19 QAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPN-TT-FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNAL 96 (696)
Q Consensus 19 ~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 96 (696)
-.++...|..++..++ ..|+...|+.++..|...|+. ++ ..++.++..|.+.|.+++|.++|+.|..||..+|+.|
T Consensus 366 ~~~~~~~~~~~y~~l~--r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~L 443 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLL--RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNML 443 (1060)
T ss_pred CCCCchHHHHHHHHHH--HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 4456678888999998 788999999999999999864 44 7788999999999999999999999999999999999
Q ss_pred HHHHHccCChhHHHHHHhcCC----CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCh
Q 005454 97 LSAHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172 (696)
Q Consensus 97 i~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 172 (696)
|.+|++.|+++.|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 999999999999999999996 4799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC------CCChhHHHHHHHHHHhCCCchHHHHHHH
Q 005454 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN------NRNLVSWNLMISGYLKNGQPKKCIDLFQ 246 (696)
Q Consensus 173 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~ 246 (696)
++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||.++|+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999995 3899999999999999999999999999
Q ss_pred HHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc----CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC
Q 005454 247 EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK----EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322 (696)
Q Consensus 247 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 322 (696)
+|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999998 46899999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC----CCCchHHHHHHHH
Q 005454 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP----TRNVVSWNSMING 398 (696)
Q Consensus 323 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~ 398 (696)
..+|++++.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|++++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 5899999999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-----------------------CCcHHHHHHHHHHhHHhhC
Q 005454 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH-----------------------ADLFERGQNHFDSISAVHG 455 (696)
Q Consensus 399 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-----------------------~g~~~~a~~~~~~m~~~~~ 455 (696)
|++.|+.++|.++|++|.+.|+.||..+|+.++..|.+ .+..++|..+|++|.+. |
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-G 842 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-G 842 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-C
Confidence 99999999999999999999999999999999876542 12346799999999985 9
Q ss_pred CCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 456 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
+.||..+|+.++..+.+.+..+.+..+++.|.. .|+..+|++|+.++... .++|..+++.|.+.+
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999999999999999999999999998865 47789999999998433 468999999999987
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-59 Score=519.90 Aligned_cols=446 Identities=17% Similarity=0.295 Sum_probs=425.1
Q ss_pred hhHHHHHHHHHHHcC-CCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcc-cHHHHHHHHHHccCChHHHHHH
Q 005454 4 KHKLRQAIDTLYSRG-QAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT-FLHNRLLHFYAKSGKLFYARDL 81 (696)
Q Consensus 4 ~~~~~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~ 81 (696)
..++.++|+.|...+ +.||..+|+.++.+|+ ..++...+.+++..+.+.|+.++ .+||.|+.+|++.|+++.|.++
T Consensus 103 ~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~--~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 180 (697)
T PLN03081 103 HREALELFEILEAGCPFTLPASTYDALVEACI--ALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL 180 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHH
Confidence 456778888998764 8899999999999999 77889999999999999999999 9999999999999999999999
Q ss_pred HccCCCCCcchHHHHHHHHHccCChhHHHHHHhcCC----CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc
Q 005454 82 FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY 157 (696)
Q Consensus 82 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 157 (696)
|++|+.||+++||++|.+|++.|++++|.++|++|. .||..+|+.++.++++.|..+.+.+++..|.+.|+.||..
T Consensus 181 f~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~ 260 (697)
T PLN03081 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260 (697)
T ss_pred HhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce
Confidence 999999999999999999999999999999999995 5789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC----CCChhHHHHHHHHHH
Q 005454 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN----NRNLVSWNLMISGYL 233 (696)
Q Consensus 158 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 233 (696)
+|++++.+|++.|++++|.++|+.|. ++|..+||+|+.+|++.|+.++|.++|++|. .||..||++++.+|+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999984 5799999999999999999999999999995 489999999999999
Q ss_pred hCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 005454 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313 (696)
Q Consensus 234 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 313 (696)
+.|++++|.+++..|.+.|+.||..+++.++.+|+++|++++|.++|+.|.++|+++||+||.+|++.|+.++|+++|++
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHH-hCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC-CCCchH
Q 005454 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV-LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVS 391 (696)
Q Consensus 314 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~ 391 (696)
|.+.|+.||..||+.++.+|+..|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++|++|+ .|+..+
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~ 496 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNM 496 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHH
Confidence 99999999999999999999999999999999999986 6999999999999999999999999999999997 689999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 458 (696)
|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+. |+.+
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99999999999999999999999976 5565 579999999999999999999999999875 7653
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=252.65 Aligned_cols=106 Identities=63% Similarity=1.130 Sum_probs=98.5
Q ss_pred ceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCcCCCCccccccchhHH--------hhhhhhhhHHHHH
Q 005454 562 AYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK--------VKSICYHSEKLAL 633 (696)
Q Consensus 562 ~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~~~~~--------~~~~~~hse~la~ 633 (696)
|+||+++ |.|++||.+||+. ++..++...||.|++..+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899987 9999999999987 566788889999999999998888766 5689999999999
Q ss_pred HhhhccCCCCCCcEEEEecc-cccCchhHHHHHHhhhcCceEEEecCCcccccc
Q 005454 634 AYCLIKKPHGVTPIRIMKNI-RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFV 686 (696)
Q Consensus 634 ~~~~~~~~~~~~~~~~~kn~-~~c~~ch~~~k~~s~~~~r~i~~rd~~~~h~f~ 686 (696)
||||+++ ||+||+ |||+|||+++|+||+++||+|||||++|||||+
T Consensus 70 afgli~~-------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT-------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce-------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999987 899999 999999999999999999999999999999997
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=310.08 Aligned_cols=539 Identities=13% Similarity=0.103 Sum_probs=343.9
Q ss_pred hHHHHHHHHHHHcCCCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHcc
Q 005454 5 HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84 (696)
Q Consensus 5 ~~~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 84 (696)
..+.+.++...+.. +.+...+..+...+. ..++...+......+....+.....+..+...|.+.|++++|.+.|++
T Consensus 312 ~~A~~~~~~~~~~~-p~~~~~~~~la~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 312 EQAYQYLNQILKYA-PNSHQARRLLASIQL--RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444555444332 233444555555555 667777777777777766655446777777888888888888888877
Q ss_pred CCC---CCcchHHHHHHHHHccCChhHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcch
Q 005454 85 MPL---RDIISWNALLSAHARSGSVQDLRALFDKMPIR---DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158 (696)
Q Consensus 85 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 158 (696)
+.. .+...+..+...+...|++++|.+.|+.+... +...+..++..+.+.|++++|+++++++... .+++..+
T Consensus 389 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~ 467 (899)
T TIGR02917 389 ATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASL 467 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHH
Confidence 654 24556667777777777777777777766432 2344556666777777777777777777653 3445556
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhC
Q 005454 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKN 235 (696)
Q Consensus 159 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 235 (696)
+..+...+...|++++|.+.+..+.+.. +.+...+..+...+...|++++|.+.|+++.. .+..++..+...+.+.
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 546 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT 546 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Confidence 6667777777777777777777776654 23455566667777777777777777776643 3455666677777777
Q ss_pred CCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHH
Q 005454 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFN 312 (696)
Q Consensus 236 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (696)
|+.++|...++++...+ +.+...+..+...|.+.|++++|..+++.+.. .+...|..+...|...|++++|+..|+
T Consensus 547 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 625 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625 (899)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777766543 33445566666667777777777777766652 345567777777777777777777777
Q ss_pred HhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCc
Q 005454 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNV 389 (696)
Q Consensus 313 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~ 389 (696)
++.+.. +.+...+..+...+...|+++.|..++..+.+... .+...+..++..+...|++++|..+++.+.. .+.
T Consensus 626 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 703 (899)
T TIGR02917 626 KLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAA 703 (899)
T ss_pred HHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCh
Confidence 766532 22344555666666667777777777777666543 2455666666677777777777777666652 344
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 469 (696)
..+..+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+ ..+.+...+..+...
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~ 779 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAEL 779 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 55666666666677777777777766663 34445555666666666666666666666665 234455666666666
Q ss_pred HhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHH
Q 005454 470 LGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547 (696)
Q Consensus 470 ~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 547 (696)
|.+.|++++|.+.|+++.. +++..+++.+...+...|+ .+|...+++++++.|+++..+..++.+|...|++++|.+
T Consensus 780 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 780 YLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665422 2345566666666666666 556666666666666666666666666666666666666
Q ss_pred HHHHhhhCC
Q 005454 548 IRSSMKSKN 556 (696)
Q Consensus 548 ~~~~m~~~~ 556 (696)
+++++.+.+
T Consensus 859 ~~~~a~~~~ 867 (899)
T TIGR02917 859 LLRKAVNIA 867 (899)
T ss_pred HHHHHHhhC
Confidence 666665544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-31 Score=307.25 Aligned_cols=509 Identities=14% Similarity=0.092 Sum_probs=394.6
Q ss_pred CchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCCC---CcchHHHHHHHHHccCChhHHHHHH
Q 005454 37 NDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR---DIISWNALLSAHARSGSVQDLRALF 113 (696)
Q Consensus 37 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f 113 (696)
..++...|...+...+...+.....+..+...+.+.|++++|...++.+... +...++.+...|.+.|++++|.+.|
T Consensus 307 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 386 (899)
T TIGR02917 307 QLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYL 386 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5678888888888887776655567777888888888888888888877643 5567788888888888888888888
Q ss_pred hcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc
Q 005454 114 DKMPI---RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190 (696)
Q Consensus 114 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 190 (696)
+++.. .+...|..+...+...|++++|++.|+++.+.... +......++..+.+.|+++.|..++..+.+.. +.+
T Consensus 387 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 464 (899)
T TIGR02917 387 AKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDN 464 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCC
Confidence 87653 24556777778888888888888888888765321 22345556677788888888888888887653 446
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005454 191 VFVRNALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267 (696)
Q Consensus 191 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 267 (696)
..++..+...|...|++++|.+.|+++.. .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 543 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLY 543 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 77788888888888888888888887654 345567778888888888888888888887754 34566777788888
Q ss_pred HhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHH
Q 005454 268 FQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344 (696)
Q Consensus 268 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 344 (696)
.+.|+.++|...|+++.. .+...+..++..|...|++++|+.+++++... .+.+..++..+..++...|+++.|..
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 622 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVS 622 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888887753 34566777888888888888888888888764 34456677888888888888888888
Q ss_pred HHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 005454 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421 (696)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 421 (696)
.+..+.+... .+...+..+...|.+.|++++|..+|+++. +.+..+|..++..+...|++++|..+++.+.+.+ +
T Consensus 623 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 623 SFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred HHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 8888887654 356677788888888888888888888765 3456688888888888888888888888888764 4
Q ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHH
Q 005454 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLL 499 (696)
Q Consensus 422 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll 499 (696)
++...+..+...+...|++++|...|+.+... .|+...+..++.++.+.|++++|.+.++++.. +.+..++..+.
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la 777 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALA 777 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 55667777778888888888888888888753 45557777788888888888888888876532 34566778888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
..|...|+.++|...++++++..|+++..+..++.+|...|+ ++|..++++..+.
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 888888888888888888888888888888888888888888 7788888877654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-22 Score=235.96 Aligned_cols=538 Identities=12% Similarity=0.068 Sum_probs=306.0
Q ss_pred hhHHHHHHHHHHHcCCCC-ChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccH----------------HHHHH
Q 005454 4 KHKLRQAIDTLYSRGQAA-TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFL----------------HNRLL 66 (696)
Q Consensus 4 ~~~~~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------~~~li 66 (696)
...+++.|+.+.. +.| ++..+..+.+.+. ..++.++|.....+..+..|..... ...+.
T Consensus 44 ~d~a~~~l~kl~~--~~p~~p~~~~~~~~~~l--~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 44 EDLVRQSLYRLEL--IDPNNPDVIAARFRLLL--RQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred hHHHHHHHHHHHc--cCCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 3445666665543 334 4556666666666 7788888888888888888766522 13334
Q ss_pred HHHHccCChHHHHHHHccCCCCCcchHH----HHHHHHHccCChhHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhH
Q 005454 67 HFYAKSGKLFYARDLFDKMPLRDIISWN----ALLSAHARSGSVQDLRALFDKMPI--R-DSVSYNTAIAGFANKGFSRE 139 (696)
Q Consensus 67 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~ 139 (696)
..+.+.|++++|.+.|+.....++.... .........|+.++|++.|+++.. | +...+..+...+...|++++
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~e 199 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDE 199 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHH
Confidence 4678889999999998888764332221 111122245888889988888864 3 45567788888888899999
Q ss_pred HHHHHHHhHHCCC------------------C--------------CCcchHH---------------------HHHHHH
Q 005454 140 ALQVFSRMQKDRF------------------E--------------PTDYTHV---------------------SALNAC 166 (696)
Q Consensus 140 A~~l~~~m~~~g~------------------~--------------p~~~t~~---------------------~ll~~~ 166 (696)
|++.|+++.+... . |+..... .....+
T Consensus 200 Al~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~ 279 (1157)
T PRK11447 200 GFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAA 279 (1157)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 9998888754310 0 0000000 001122
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CCh---hHHHH------------HH
Q 005454 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN--RNL---VSWNL------------MI 229 (696)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~------------li 229 (696)
...|++++|...++..++... .+...+..|...|.+.|++++|+..|++..+ |+. ..|.. ..
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 344555555555555555432 2444555555555555555555555555433 111 11111 12
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhH
Q 005454 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEED 306 (696)
Q Consensus 230 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 306 (696)
..+.+.|++++|+..|++..+.. +.+...+..+...|...|++++|.+.|+++.+ .+...+..+...|. .++.++
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHH
Confidence 23445555555555555555432 12233344445555555555555555555442 22333444444442 234455
Q ss_pred HHHHHHHhccCCCC--------CCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHH
Q 005454 307 ALILFNEMLSEDVR--------PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378 (696)
Q Consensus 307 A~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 378 (696)
|+..++.+...... .....+......+...|++++|...++.+++..+. +..++..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 55544443221000 00011222334455567777777777777665543 4555666677777777777777
Q ss_pred HHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhcCCcHHHHHHH
Q 005454 379 TVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF---------TFVSVLSACLHADLFERGQNH 446 (696)
Q Consensus 379 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~~ 446 (696)
..|+++. ..+...+..+...+...|+.++|+..++++......++.. .+..+...+...|+.++|..+
T Consensus 516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 7776653 2233444444444556666666666666543322112111 122334455666777777666
Q ss_pred HHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 447 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
++. .+++...+..+.+.|.+.|++++|++.+++.. ..| +...+..+...+...|+.++|+..++++++..|+
T Consensus 596 l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 596 LRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred HHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 541 13344556667777778888888887777643 234 4557777777777788888888888887777777
Q ss_pred CCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 525 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
++..+..++.++...|++++|.++++++...
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 7777777788888888888888888777654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-21 Score=229.16 Aligned_cols=506 Identities=12% Similarity=0.055 Sum_probs=369.1
Q ss_pred chhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCCCCcc------h-----------------HH
Q 005454 38 DVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDII------S-----------------WN 94 (696)
Q Consensus 38 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------~-----------------~~ 94 (696)
.++...|+..+..++...|....++..+...+...|+.++|...++++...... . +.
T Consensus 160 ~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~ 239 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQ 239 (1157)
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHH
Confidence 456666777777776666554456666777777777777777777766432110 0 11
Q ss_pred HHHHHHHccCChhHHHHHHhcCCC--CCcc-hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccC
Q 005454 95 ALLSAHARSGSVQDLRALFDKMPI--RDSV-SYNTAIAGFANKGFSREALQVFSRMQKDRFEP-TDYTHVSALNACAQLL 170 (696)
Q Consensus 95 ~li~~~~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~ 170 (696)
..+..+-....++.|...++.... .|.. ........+...|++++|+..|++..+. .| +...+..+..++.+.|
T Consensus 240 ~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g 317 (1157)
T PRK11447 240 KYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQG 317 (1157)
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 111111111223334444433211 0111 1123345677889999999999999875 45 5567788888999999
Q ss_pred ChHHHHHHHHHHHHcCCCCc-hhHH------------HHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHh
Q 005454 171 DLRRGKQIHGKIVVGNLGGN-VFVR------------NALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLK 234 (696)
Q Consensus 171 ~~~~a~~~~~~~~~~g~~~~-~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 234 (696)
++++|...+...++...... ...+ ..+...+.+.|++++|+..|++... .+...+..+...+..
T Consensus 318 ~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~ 397 (1157)
T PRK11447 318 DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA 397 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999988754322 1111 2234567899999999999999876 355678889999999
Q ss_pred CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCC------------hhHHHHHHHHHHhcC
Q 005454 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKD------------NVCWTTMIVGYTQNG 302 (696)
Q Consensus 235 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g 302 (696)
.|++++|++.|++..+.. +.+...+..+...|. .++.++|..+++.+.... ...+..+...+...|
T Consensus 398 ~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g 475 (1157)
T PRK11447 398 RKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQG 475 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC
Confidence 999999999999998753 233445566666664 567899999998876432 223555677888999
Q ss_pred ChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHH
Q 005454 303 KEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381 (696)
Q Consensus 303 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 381 (696)
++++|++.|++.++. .|+ ...+..+...+...|+.++|...++.+++.... +......+...+.+.|+.++|...+
T Consensus 476 ~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 476 KWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999874 454 455667788899999999999999999886543 4555555666678899999999999
Q ss_pred hcCCCC----Cch---------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Q 005454 382 NMMPTR----NVV---------SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448 (696)
Q Consensus 382 ~~~~~~----~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 448 (696)
+.+... +.. .+..+...+...|+.++|+.+++. .+++...+..+...+.+.|++++|+..|+
T Consensus 553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~ 627 (1157)
T PRK11447 553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQ 627 (1157)
T ss_pred HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 988642 111 123456678899999999999872 34555677778888999999999999999
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 449 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
.+.+. -+.+...+..++.+|...|++++|.+.++.... .| +..++..+..++...|++++|...++++++..|+++
T Consensus 628 ~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 628 RVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 99863 344578889999999999999999999998654 34 455777888889999999999999999999877655
Q ss_pred c------hHHHHHHHHhhcCChhHHHHHHHHhh-hCCC
Q 005454 527 G------PYIMLSNMYAACGRWEDVASIRSSMK-SKNV 557 (696)
Q Consensus 527 ~------~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~ 557 (696)
. .+..++.++...|++++|...+++.. ..|+
T Consensus 706 ~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 706 PSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 3 56677999999999999999998775 3344
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-21 Score=212.93 Aligned_cols=514 Identities=12% Similarity=0.007 Sum_probs=349.3
Q ss_pred HHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCCCCc---chHHHHHHHHH
Q 005454 25 AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDI---ISWNALLSAHA 101 (696)
Q Consensus 25 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~ 101 (696)
++..++.+......|+...|...+..+++..|....++..|...|.+.|+.++|+..+++..+.|+ ..+..| +
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L----a 119 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL----A 119 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH----H
Confidence 444555555544558888999999999988887778889999999999999999999998876433 333333 2
Q ss_pred ccCChhHHHHHHhcCCC--C-CcchHHHHHHH--------HHhCCChhHHHHHHHHhHHCCCCCCcchHHHH-HHHHHcc
Q 005454 102 RSGSVQDLRALFDKMPI--R-DSVSYNTAIAG--------FANKGFSREALQVFSRMQKDRFEPTDYTHVSA-LNACAQL 169 (696)
Q Consensus 102 ~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~ 169 (696)
..++.++|..+++++.. | +...+..+... |.+. ++|.+.++ .......|+..+.... ...+...
T Consensus 120 ~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 120 AIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred HhccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHH
Confidence 22888888899988863 3 33344444443 5555 44444444 3333334445545544 7888888
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc-CCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHH
Q 005454 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK-GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248 (696)
Q Consensus 170 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 248 (696)
++++++..++..+.+.+.. +......|..+|.. .++ +.+..+++...+.|...+..++..|.+.|+.++|.++++++
T Consensus 196 ~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 196 KQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred hCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 9999999999998888743 45556667777777 466 88888877655567788888888888999999888888887
Q ss_pred HHcCCC-CCcchHHHHHHH------------------------------HHh----------------------------
Q 005454 249 QLLGLN-PDEVTVSNILGA------------------------------CFQ---------------------------- 269 (696)
Q Consensus 249 ~~~g~~-p~~~t~~~ll~~------------------------------~~~---------------------------- 269 (696)
...-.. |+..++.-++.- +.+
T Consensus 274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 353 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSV 353 (987)
T ss_pred cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcc
Confidence 554222 444333332221 233
Q ss_pred -----------------------------------cCCHHHHHHHHHhccC-C-----ChhHHHHHHHHHHhcCC---hh
Q 005454 270 -----------------------------------TGRIDDAGRLFHVIKE-K-----DNVCWTTMIVGYTQNGK---EE 305 (696)
Q Consensus 270 -----------------------------------~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~---~~ 305 (696)
.|+.++|.++|+..-+ + +...-+-++..|.+.+. ..
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 3444444444443332 1 11112233344433333 22
Q ss_pred HHHHH----------------------HHHhcc-CCCCC---CccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchH
Q 005454 306 DALIL----------------------FNEMLS-EDVRP---DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359 (696)
Q Consensus 306 ~A~~~----------------------~~~m~~-~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 359 (696)
+++.+ +..... .+..| +...+..+..++.. ++.++|...+....... |+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 22211 000000 01111 22233333333333 66677777777776654 3433
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhcCCC--CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVLSACLH 436 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 436 (696)
....+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|++.++.. |+. ..+..+......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHh
Confidence 333445555789999999999987653 455567777888899999999999999998853 443 333344445566
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 005454 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKPN-SLIWSTLLSVCAMKGDIKHGEMA 514 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 514 (696)
.|++++|...+++..+ ..|+...|..+..++.+.|++++|...+++.. ..|+ ...+..+..++...|+.++|...
T Consensus 589 ~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7999999999999875 45778899999999999999999999998753 3554 55788888899999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 515 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
++++++++|+++..+..++.+|...|++++|...+++..+..
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999887643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-19 Score=198.17 Aligned_cols=528 Identities=11% Similarity=0.006 Sum_probs=375.5
Q ss_pred HHHHHHHHHHc-CCCCC-hHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHcc
Q 005454 7 LRQAIDTLYSR-GQAAT-EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84 (696)
Q Consensus 7 ~~~~~~~m~~~-g~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 84 (696)
..++++.+++. .+.|+ ..++..+.+.+. ..++..+|+......++..|.....+..| ..+ ++.++|..++++
T Consensus 60 ~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl--~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~~ye~ 133 (987)
T PRK09782 60 EATAIREFEYIHQQVPDNIPLTLYLAEAYR--HFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVTTVEE 133 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHHHHHH
Confidence 33445544332 23443 556777778888 88899999999999999887433555544 222 889999999999
Q ss_pred CCCC---CcchHHHHHHH--------HHccCChhHHHHHHhcCCCCC--cch-HHHHHHHHHhCCChhHHHHHHHHhHHC
Q 005454 85 MPLR---DIISWNALLSA--------HARSGSVQDLRALFDKMPIRD--SVS-YNTAIAGFANKGFSREALQVFSRMQKD 150 (696)
Q Consensus 85 ~~~~---~~~~~~~li~~--------~~~~g~~~~A~~~f~~~~~~~--~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~ 150 (696)
+... +..++..+... |.+.+...+|++ .+...++ ... .-.+...|.+.|++++|++++.++.+.
T Consensus 134 l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 134 LLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 8753 45566666665 888777777776 3333333 333 444488999999999999999999987
Q ss_pred CCCCCcchHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-----CC---
Q 005454 151 RFEPTDYTHVSALNACAQ-LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-----RN--- 221 (696)
Q Consensus 151 g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~--- 221 (696)
+.. +..-...+-.++.. .++ +.+..++.. .++.++.++..+++.|.+.|+.++|.++++++.. |+
T Consensus 212 ~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 212 NTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred CCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 532 23334455556666 355 666666442 3446888899999999999999999999988861 00
Q ss_pred --------------------------------------------------------------------------------
Q 005454 222 -------------------------------------------------------------------------------- 221 (696)
Q Consensus 222 -------------------------------------------------------------------------------- 221 (696)
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 365 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLA 365 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHH
Confidence
Q ss_pred ----------hhHHHHHHHHHHhCCCchHHHHHHHHHHHc-C-CCCCcchHHHHHHHHHhcCC---HHHHHHH-------
Q 005454 222 ----------LVSWNLMISGYLKNGQPKKCIDLFQEMQLL-G-LNPDEVTVSNILGACFQTGR---IDDAGRL------- 279 (696)
Q Consensus 222 ----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~p~~~t~~~ll~~~~~~g~---~~~A~~~------- 279 (696)
....-.+.-...+.|+.++|..+|+..... + -.++.....-++..|.+.+. ...+..+
T Consensus 366 ~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 366 RLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 000001111223445555666666555441 1 11222233366667776665 2222222
Q ss_pred ------------------HHhcc---CC--ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhh
Q 005454 280 ------------------FHVIK---EK--DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336 (696)
Q Consensus 280 ------------------~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 336 (696)
+.... .+ +...|..+..++.. +++++|+..+.+.... .|+......+..++...
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 446 EQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQV 522 (987)
T ss_pred hhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHC
Confidence 11111 12 55677888887776 8999999988887754 46655444445555689
Q ss_pred cCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHH---HHHHHHHcCChHHHHHHHH
Q 005454 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS---MINGYAQNGQDLEALALYD 413 (696)
Q Consensus 337 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~ 413 (696)
|+++.|...+..+... .|+...+..+...+.+.|+.++|...|+.....++..++. +.......|++++|+..|+
T Consensus 523 Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 523 EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999987654 3344456677888999999999999998877544333333 3333445599999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-C
Q 005454 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-N 491 (696)
Q Consensus 414 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~ 491 (696)
+.++ +.|+...+..+..++.+.|++++|+..+++.... -+.+...+..+...+...|++++|++.+++.. ..| +
T Consensus 601 ~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 601 RSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9998 5688888999999999999999999999999862 23346788889999999999999999998753 345 5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 492 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
...+..+..++...|++++|+..++++++++|++..+....+++..+..+++.|.+-+++--.-.+
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 668999999999999999999999999999999999999999999999999999998877655444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-20 Score=185.56 Aligned_cols=445 Identities=16% Similarity=0.153 Sum_probs=277.1
Q ss_pred HHHHHHHHHccCChHHHHHHHccCCCCC---cchHHHHHHHHHccCChhHHHHHHhcCCCC---CcchHHHHHHHHHhCC
Q 005454 62 HNRLLHFYAKSGKLFYARDLFDKMPLRD---IISWNALLSAHARSGSVQDLRALFDKMPIR---DSVSYNTAIAGFANKG 135 (696)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g 135 (696)
...|..-..+.|++.+|++--..+-..| ....-.+-..|.+..+++....--....+. -..+|..+...+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 3445555556666666666554443322 122222334445555544433222222211 2345666666666666
Q ss_pred ChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchh-HHHHHHHHHHcCCCHHHHHHH
Q 005454 136 FSREALQVFSRMQKDRFEPT-DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF-VRNALTDMYAKGGEIDKARWL 213 (696)
Q Consensus 136 ~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~ 213 (696)
+.++|+.+++.|.+. +|+ ...|..+..++...|+.+.|.+.+...++.. |+.+ ..+-+-......|++++|...
T Consensus 131 ~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 666666666666653 333 2345555555555666666666555555432 2222 122233333344555555555
Q ss_pred HHhcCC--CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhH
Q 005454 214 FDRMNN--RN-LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290 (696)
Q Consensus 214 ~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 290 (696)
+.+... |. .+.|+.|...+-.+|+...|+.-|++.... .|+- ...
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f------------------------------~dA 254 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNF------------------------------LDA 254 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcc------------------------------hHH
Confidence 544333 21 234555555555555555555555554432 2221 223
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHH
Q 005454 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369 (696)
Q Consensus 291 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 369 (696)
|-.|...|...+.+++|+..|.+... ..|+ ...+..+...|...|.++.|+..+++.++..+. -...|+.|.+++-
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALk 331 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALK 331 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHH
Confidence 44455555555556666655555543 2333 334444445555666666666666666654432 3556777777777
Q ss_pred hcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHH
Q 005454 370 KCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQN 445 (696)
Q Consensus 370 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~ 445 (696)
..|++.+|...|..... ....+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+.
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIM 409 (966)
T ss_pred hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHH
Confidence 77777777777776552 2345677788888888888888888888877 66764 578888888889999999999
Q ss_pred HHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 446 HFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKS-LPHKPNS-LIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 446 ~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
.+++.. .+.|+ ...|+.|...|...|+.+.|.+.+.+ +...|.- ...+.|...+...|++.+|...++.+++++
T Consensus 410 ~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 410 CYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 888876 56787 47889999999999999999988876 4556754 488999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 523 PINAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 523 p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
|+.+.+|-.++.++.-..+|.+=.+.++
T Consensus 487 PDfpdA~cNllh~lq~vcdw~D~d~~~~ 514 (966)
T KOG4626|consen 487 PDFPDAYCNLLHCLQIVCDWTDYDKRMK 514 (966)
T ss_pred CCCchhhhHHHHHHHHHhcccchHHHHH
Confidence 9999999999999888888877443333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-20 Score=183.34 Aligned_cols=421 Identities=14% Similarity=0.155 Sum_probs=338.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 005454 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203 (696)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 203 (696)
-..|..-..+.|++++|++.-...-+.+ +.+..+...+-..+.+..+++...+.-...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445556677888888887655443331 1222222223333445555555444444444433 2245678889999999
Q ss_pred CCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH-HHhcCCHHHHHHH
Q 005454 204 GGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA-CFQTGRIDDAGRL 279 (696)
Q Consensus 204 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~A~~~ 279 (696)
.|++++|+..++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+. .|+.....+-+.. +...|++++|...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999999876 35678999999999999999999999998874 5766655444444 4457999999998
Q ss_pred HHhccCC---ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCC
Q 005454 280 FHVIKEK---DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355 (696)
Q Consensus 280 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 355 (696)
+.+..+. -.+.|+.|...+-.+|+...|+.-|++... +.|+ ...|..+...+...+.++.|...+..+....+
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp- 283 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP- 283 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-
Confidence 8876643 356899999999999999999999999886 5565 34677888888888999999999888877654
Q ss_pred CchHHHHHHHhhHHhcCChHHHHHHHhcCCC--CC-chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 005454 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RN-VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVL 431 (696)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 431 (696)
....++..+...|..+|.+|.|+..|++... |+ ...|+.|..++-..|+..+|...|.+.+. +.|+. .+.+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHH
Confidence 3567778888999999999999999998874 43 45899999999999999999999999988 56774 6889999
Q ss_pred HHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCHH-HHHHHHHHHHhcCCh
Q 005454 432 SACLHADLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKS-LPHKPNSL-IWSTLLSVCAMKGDI 508 (696)
Q Consensus 432 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~-~~~~ll~~~~~~g~~ 508 (696)
..+...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|+.-+++ +.++|+.. .++.+...|...|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999886 45566 46789999999999999999999987 56688765 899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 509 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
..|.+.+.+++..+|.-..++..|+.+|-.+|+..+|+.-++...+-.
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998886643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-18 Score=188.69 Aligned_cols=418 Identities=12% Similarity=0.039 Sum_probs=289.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 005454 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202 (696)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 202 (696)
.+......+.+.|++++|+..|++..+. .|+...|..+..++...|+++.|...+..+++.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3456667788889999999999888754 6777778888888888889999988888888765 235667778888899
Q ss_pred cCCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 005454 203 KGGEIDKARWLFDRMNNR---NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL 279 (696)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 279 (696)
..|++++|...|...... +......++..+.. ..+........+.. +++...+..+ ..|......+.+..-
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAG 279 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhh
Confidence 999999988877654321 11111111211111 12222222222221 2222222222 222222111111111
Q ss_pred HHhccCCCh---hHHHHHHHH---HHhcCChhHHHHHHHHhccCC-CCCC-ccchHHHHHHHHhhcCchhHHHHHHHHHH
Q 005454 280 FHVIKEKDN---VCWTTMIVG---YTQNGKEEDALILFNEMLSED-VRPD-KFSISSVVSSCAKLASLYHGQVVHGKAVV 351 (696)
Q Consensus 280 ~~~~~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 351 (696)
++...+.+. ..+..+... ....+++++|++.|++....+ ..|+ ...+..+...+...|+++.|...+..+++
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111111111 111111111 123478899999999988754 2343 34566666677788999999999999988
Q ss_pred hCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 005454 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTF 427 (696)
Q Consensus 352 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~ 427 (696)
..+. +...+..+...+...|++++|...|+... ..+...|..+...+...|++++|+..|++.++. .|+ ...+
T Consensus 360 l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~ 436 (615)
T TIGR00990 360 LDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSH 436 (615)
T ss_pred cCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHH
Confidence 6542 46677888889999999999999998765 345778999999999999999999999999984 454 5667
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCH-------H-HHHHH
Q 005454 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKPNS-------L-IWSTL 498 (696)
Q Consensus 428 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-------~-~~~~l 498 (696)
..+..++.+.|++++|+..|+...+. .+.+...+..+..++...|++++|.+.|++. ...|+. . .++..
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 77788889999999999999998863 3445788899999999999999999999873 333321 1 12222
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+..+...|++++|...++++++++|++..++..++.+|...|++++|.+.+++..+
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22334469999999999999999999999999999999999999999999998865
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-19 Score=185.05 Aligned_cols=292 Identities=16% Similarity=0.136 Sum_probs=172.6
Q ss_pred HHHHhCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHcC
Q 005454 129 AGFANKGFSREALQVFSRMQKDRFEPT-DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN---VFVRNALTDMYAKG 204 (696)
Q Consensus 129 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 204 (696)
..+...|++++|+..|.++.+. .|+ ..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3455667777777777777765 343 33566666677777777777777777766532221 24567788888888
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc----chHHHHHHHHHhcCCHHHHH
Q 005454 205 GEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE----VTVSNILGACFQTGRIDDAG 277 (696)
Q Consensus 205 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~ 277 (696)
|+++.|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+...+..++. ..+..+...+.+.|++++|.
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 999999998888865 45667888888888999999999999888876533221 12334455566667777776
Q ss_pred HHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCC
Q 005454 278 RLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354 (696)
Q Consensus 278 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 354 (696)
..|+++.+ .+...+..+...|.+.|++++|++.|+++...+......++..+..++...|+.+.|...+..+.+..
T Consensus 201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 66666542 23445555666666667777777766666643221112334444455555555555555555554443
Q ss_pred CCchHHHHHHHhhHHhcCChHHHHHHHhcCC--CCCchHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCH
Q 005454 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMINGYAQ---NGQDLEALALYDKLLQENLKPDS 424 (696)
Q Consensus 355 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~ 424 (696)
|+...+..++..|.+.|++++|..+|+.+. .|+..+++.++..+.. .|+..+++.++++|.+.+++|++
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 222333444445555555555555554333 2444444444444332 23444555555555444444433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-18 Score=176.49 Aligned_cols=166 Identities=11% Similarity=0.093 Sum_probs=108.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 471 (696)
..+...+...|++++|...|+++.+. .|+ ..++..+...+.+.|++++|.++|+++... +.......+..++.+|.
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHH
Confidence 34455555666666666666666553 233 345555556666666666666666666542 11111345566667777
Q ss_pred ccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh---cCChhHHHH
Q 005454 472 RSSDVDKAVDLIKSLP-HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA---CGRWEDVAS 547 (696)
Q Consensus 472 ~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~ 547 (696)
+.|++++|.+.++++. ..|+...+..+...+...|++++|...++++++..|++. .+..+...+.. .|+.+++..
T Consensus 261 ~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~ 339 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLL 339 (389)
T ss_pred HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHH
Confidence 7777777777776643 246666667778888888888888888888888888765 34444444442 568889999
Q ss_pred HHHHhhhCCCcCCCc
Q 005454 548 IRSSMKSKNVKKFAA 562 (696)
Q Consensus 548 ~~~~m~~~~~~~~~~ 562 (696)
++++|.++++++.|.
T Consensus 340 ~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 340 LLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHhCCCC
Confidence 999998888888876
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-16 Score=166.49 Aligned_cols=525 Identities=11% Similarity=0.041 Sum_probs=381.6
Q ss_pred HHHHHHHhhccCchhHHHHHHHhhhhhccCCCcc-cHHHHHHHHHHccCChHHHHHHHccCCCCCcchHHHHHHHHH---
Q 005454 26 YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT-FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHA--- 101 (696)
Q Consensus 26 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~--- 101 (696)
..-+-++|.....+++..++.++..++...|... .+.-.+-.++.+.|+.+.|+..|.+..+-|+...++++....
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l 244 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDL 244 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 3446788877788999999999999887777655 565566688899999999999999999877766666554332
Q ss_pred cc---CChhHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCC--CCcchHHHHHHHHHccCChH
Q 005454 102 RS---GSVQDLRALFDKMP---IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE--PTDYTHVSALNACAQLLDLR 173 (696)
Q Consensus 102 ~~---g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~ 173 (696)
.. ..+..+..++...- ..|++..+.|..-|.-.|+++.++.+...+...... .-...|--+.+++-..|+++
T Consensus 245 ~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 245 NFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred HccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHH
Confidence 22 23444555554432 357888999999999999999999999888764311 11234777888899999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCC----CchHHHHHHH
Q 005454 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN--R-NLVSWNLMISGYLKNG----QPKKCIDLFQ 246 (696)
Q Consensus 174 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~l~~ 246 (696)
.|..+|.+..+....-.+..+-.|..+|.+.|+++.|...|+++.. | +..+...+...|+..+ ..++|..++.
T Consensus 325 kA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 325 KAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 9999999988875443355566789999999999999999999865 3 4557777777777775 4466666666
Q ss_pred HHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc--------CCChhHHHHHHHHHHhcCChhHHHHHHHHhccC-
Q 005454 247 EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK--------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE- 317 (696)
Q Consensus 247 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 317 (696)
+..+.- +.|...|..+...|-...- ..++.+|.... ...+...|.+...+...|++++|...|.+....
T Consensus 405 K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 405 KVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 665543 4456667666666554433 22244443322 346678899999999999999999999988754
Q ss_pred --CCCCCcc-----c-hHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---C
Q 005454 318 --DVRPDKF-----S-ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---T 386 (696)
Q Consensus 318 --g~~p~~~-----t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~ 386 (696)
-..+|.. | --.+....-..++.+.|.+.+..+++..+. -+..|--|+.+.-..+...+|...++... +
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~ 561 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDS 561 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc
Confidence 2233331 2 222334445667899999999999886542 23333333333334467788888888765 4
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc------------CCcHHHHHHHHHHhHHh
Q 005454 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLH------------ADLFERGQNHFDSISAV 453 (696)
Q Consensus 387 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~~~ 453 (696)
.|+..|+-+...+.....+..|.+-|....+.- ..+|..+..+|.+.|.. .+..+.|+++|..+.+
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~- 640 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR- 640 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh-
Confidence 677788888888999888988988777766532 34677777777776643 2346778888887775
Q ss_pred hCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCchH
Q 005454 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK--PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE--PINAGPY 529 (696)
Q Consensus 454 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~ 529 (696)
.-+.|...-+.+.-.++..|++.+|.++|.+.... .+..+|-.+..+|...|++..|.++|+..++.. .+++...
T Consensus 641 -~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl 719 (1018)
T KOG2002|consen 641 -NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL 719 (1018)
T ss_pred -cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 33455667777888899999999999999876432 345688999999999999999999999987754 4566778
Q ss_pred HHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 530 IMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 530 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
..|+.++.+.|+|.+|.+........
T Consensus 720 ~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 720 HYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 89999999999999999988766553
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-16 Score=176.03 Aligned_cols=392 Identities=11% Similarity=0.037 Sum_probs=230.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 005454 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205 (696)
Q Consensus 126 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 205 (696)
-.+......|+.++|++++.+..... +.+...+..+..++...|++++|..+++..++.. +.+...+..+..++...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 33445556677777777776665421 2233345566666666666666666666666553 223444556666666666
Q ss_pred CHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 005454 206 EIDKARWLFDRMNN--R-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD-EVTVSNILGACFQTGRIDDAGRLFH 281 (696)
Q Consensus 206 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~ 281 (696)
++++|...+++... | +.. |..+...+...|++++|+..++++.+. .|+ ...+..+..++...|..+.|...++
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 66666666666543 2 333 555666666666666666666666654 232 2233334444555555555555555
Q ss_pred hccCCChh--------HHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCc---hhHHHHHHHHH
Q 005454 282 VIKEKDNV--------CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL---YHGQVVHGKAV 350 (696)
Q Consensus 282 ~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~ 350 (696)
.... ++. ....++......+ ....+.+ +.|...++.+.
T Consensus 175 ~~~~-~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 175 DANL-TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYAIADRALAQYDALE 223 (765)
T ss_pred hCCC-CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHHHHHHHHHHHHHHH
Confidence 5443 111 0000111110000 0011111 34444555554
Q ss_pred Hh-CCCCchH--HHHH---HHhhHHhcCChHHHHHHHhcCCCCC---ch-HHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 005454 351 VL-GVDDDLL--VSSA---LIDMYCKCGVTDDAWTVFNMMPTRN---VV-SWNSMINGYAQNGQDLEALALYDKLLQENL 420 (696)
Q Consensus 351 ~~-~~~~~~~--~~~~---li~~y~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 420 (696)
+. ...|+.. ...+ .+..+...|+.++|+..|+.+...+ +. .-..+...|...|++++|+..|+++.+..
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~- 302 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP- 302 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC-
Confidence 33 1111111 1111 1223345577777777777776421 11 11224567777888888888888776532
Q ss_pred CCC-----HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhC----------CCCC---hHHHHHHHHHHhccCCHHHHHHH
Q 005454 421 KPD-----SFTFVSVLSACLHADLFERGQNHFDSISAVHG----------ITPS---LDHYACMINLLGRSSDVDKAVDL 482 (696)
Q Consensus 421 ~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~ 482 (696)
|. ......+..++...|++++|.++++.+..... -.|+ ...+..+..++...|++++|++.
T Consensus 303 -p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 303 -ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred -CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22 23455556667778888888888887765310 1122 23455677788888999999988
Q ss_pred HHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 483 IKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 483 ~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
++++.. .| +...+..+...+...|+.++|+..++++++++|+++..+..++..+...|+|++|..+++.+.+.
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 887533 34 45688888888889999999999999999999999999889999999999999999999888764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-15 Score=170.83 Aligned_cols=407 Identities=10% Similarity=0.062 Sum_probs=280.9
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHHc
Q 005454 93 WNALLSAHARSGSVQDLRALFDKMPI---RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT-DYTHVSALNACAQ 168 (696)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~ 168 (696)
..=.+......|+.++|++++.+... .+...+..+...+...|++++|.++|++..+. .|+ ...+..+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 34456677889999999999998764 24445899999999999999999999998875 454 4456677778889
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCCchHHHHHH
Q 005454 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN--R-NLVSWNLMISGYLKNGQPKKCIDLF 245 (696)
Q Consensus 169 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~ 245 (696)
.|++++|...++.+++.. +.+.. +..+..++...|+.++|+..++++.. | +...+..+...+...|..++|++.+
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999999999999874 33555 88899999999999999999999876 3 4556677888888999999999988
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCCh---hHHHHHHHHhccC-CCCC
Q 005454 246 QEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE---EDALILFNEMLSE-DVRP 321 (696)
Q Consensus 246 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~-g~~p 321 (696)
+.... .|+... -+ ....+....+.. +.......+++ ++|++.++.+.+. ...|
T Consensus 174 ~~~~~---~p~~~~---~l-------~~~~~~~~~r~~----------~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p 230 (765)
T PRK10049 174 DDANL---TPAEKR---DL-------EADAAAELVRLS----------FMPTRSEKERYAIADRALAQYDALEALWHDNP 230 (765)
T ss_pred HhCCC---CHHHHH---HH-------HHHHHHHHHHhh----------cccccChhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 76553 333100 00 000111111100 11111122222 5566666665542 1222
Q ss_pred Ccc-chHH----HHHHHHhhcCchhHHHHHHHHHHhCCC-CchHHHHHHHhhHHhcCChHHHHHHHhcCCCCC-------
Q 005454 322 DKF-SISS----VVSSCAKLASLYHGQVVHGKAVVLGVD-DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN------- 388 (696)
Q Consensus 322 ~~~-t~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------- 388 (696)
+.. .+.. .+.++...++.++|+..++.+.+.+.+ |+ .....+...|...|++++|...|+.+...+
T Consensus 231 ~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~ 309 (765)
T PRK10049 231 DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS 309 (765)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC
Confidence 221 1110 123344556677777777776665432 22 122224667777788888877777654321
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhcCCcHHHHHHHHHHhHHhh
Q 005454 389 VVSWNSMINGYAQNGQDLEALALYDKLLQEN-----------LKPDS---FTFVSVLSACLHADLFERGQNHFDSISAVH 454 (696)
Q Consensus 389 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 454 (696)
...+..+..++...|++++|.++++++.... -.|+. ..+..+...+...|+.++|++.++.+..
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-- 387 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-- 387 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 1235556667788888888888888887642 12332 2345566778889999999999999976
Q ss_pred CCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchH
Q 005454 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 455 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
..+.+...+..+..++...|++++|++.+++.. ..|+ ...+..+...+...|++++|+.+++++++..|+++.+.
T Consensus 388 ~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 388 NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 345557888899999999999999999998754 3565 45677777788899999999999999999999988653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-15 Score=166.91 Aligned_cols=440 Identities=13% Similarity=0.062 Sum_probs=304.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHhcCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHHc
Q 005454 92 SWNALLSAHARSGSVQDLRALFDKMP--IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT-DYTHVSALNACAQ 168 (696)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~ 168 (696)
.+..+...|.+.|++++|++.|++.. .|+...|..+..+|.+.|++++|++.+.+..+. .|+ ...+..+..++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 34567788899999999999998875 467778888999999999999999999998875 454 4477788888999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHH
Q 005454 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248 (696)
Q Consensus 169 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 248 (696)
.|++++|..-+..+...+...+.... .++..+........+...++.-+ .+..++..+.. |........+..-+.+-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSA-QAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHH-HHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 99999999888766554322222222 22222212112234444443322 23333333322 32222222222222211
Q ss_pred HHcCCCCCc-chHHHHHHH---HHhcCCHHHHHHHHHhccCC------ChhHHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 005454 249 QLLGLNPDE-VTVSNILGA---CFQTGRIDDAGRLFHVIKEK------DNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318 (696)
Q Consensus 249 ~~~g~~p~~-~t~~~ll~~---~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 318 (696)
.+ ..|+. ..+..+... ....+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.++.
T Consensus 284 ~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l- 360 (615)
T TIGR00990 284 NE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL- 360 (615)
T ss_pred cc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 11 11111 111111111 12346888999999877632 3456888888889999999999999998864
Q ss_pred CCCC-ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHH
Q 005454 319 VRPD-KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNS 394 (696)
Q Consensus 319 ~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 394 (696)
.|+ ...|..+...+...|++++|...+..+++... .+..++..+...|...|++++|...|+.... .+...|..
T Consensus 361 -~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 361 -DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 454 44677777788889999999999999988754 3678888999999999999999999997763 35667888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh--------HHHHH
Q 005454 395 MINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL--------DHYAC 465 (696)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~~~~~ 465 (696)
+...+.+.|++++|+..|++.++. .|+ ...+..+...+...|++++|+..|+..... .|+. ..++.
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHH
Confidence 889999999999999999999874 454 678888888999999999999999998752 3321 11222
Q ss_pred HHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChh
Q 005454 466 MINLLGRSSDVDKAVDLIKSL-PHKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 543 (696)
....+...|++++|.+++++. ...|+ ...+..+...+...|++++|...+++++++.+.....+ ....|.
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~ 585 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYA 585 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHH
Confidence 233344579999999999873 44554 44788999999999999999999999999887543322 233455
Q ss_pred HHHHHHHHhhh
Q 005454 544 DVASIRSSMKS 554 (696)
Q Consensus 544 ~A~~~~~~m~~ 554 (696)
+|.++..+.++
T Consensus 586 ~a~~~~~~~~~ 596 (615)
T TIGR00990 586 EATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHH
Confidence 66666554444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-16 Score=172.75 Aligned_cols=326 Identities=14% Similarity=0.044 Sum_probs=188.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHh
Q 005454 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLK 234 (696)
Q Consensus 158 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 234 (696)
....++..+.+.|+++.|..++...+...... ...+..++......|++++|...|+++.. .+...|..+...+.+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34556666777777777777777777765443 33333344455567777777777777654 234456666677777
Q ss_pred CCCchHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHhcCChhHHHHH
Q 005454 235 NGQPKKCIDLFQEMQLLGLNPD-EVTVSNILGACFQTGRIDDAGRLFHVIKE--K-DNVCWTTMIVGYTQNGKEEDALIL 310 (696)
Q Consensus 235 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~ 310 (696)
.|++++|++.++++... .|+ ...+..+...+...|+.++|...++.+.. | +...+..+ ..+...|++++|+..
T Consensus 123 ~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 77777777777777654 233 34455555556666666666666654431 1 22222222 235555666666666
Q ss_pred HHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CC
Q 005454 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TR 387 (696)
Q Consensus 311 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~ 387 (696)
++.+......++.. ....+...+.+.|+.++|...|+... ..
T Consensus 200 ~~~~l~~~~~~~~~-----------------------------------~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~ 244 (656)
T PRK15174 200 ARALLPFFALERQE-----------------------------------SAGLAVDTLCAVGKYQEAIQTGESALARGLD 244 (656)
T ss_pred HHHHHhcCCCcchh-----------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 66554432222222 22233344444555555555554433 12
Q ss_pred CchHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHH
Q 005454 388 NVVSWNSMINGYAQNGQDLE----ALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 462 (696)
+...+..+...|...|++++ |+..|++..+. .|+ ...+..+...+...|++++|...+++..+. -+.+...
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a 320 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYV 320 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 33455555566666666654 66777776663 344 345666666677777777777777776642 1222445
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhCC-CCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 463 YACMINLLGRSSDVDKAVDLIKSLP-HKPNSLIW-STLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
+..+..+|.+.|++++|.+.++++. ..|+...+ ..+..++...|+.++|...++++++..|++.
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 5566677777777777777776643 34554333 3345566777888888888888887777653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6e-16 Score=170.69 Aligned_cols=346 Identities=8% Similarity=0.001 Sum_probs=265.7
Q ss_pred cCCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 005454 203 KGGEIDKARWLFDRMNN------RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA 276 (696)
Q Consensus 203 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 276 (696)
+..+++.---.|...++ .+..-...++..+.+.|++++|+.+++........+ ...+..++.+....|+.++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 44455444444444433 122234456777888899999999988888764332 33444555666778999999
Q ss_pred HHHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcCchhHHHHHHHHHHh
Q 005454 277 GRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLASLYHGQVVHGKAVVL 352 (696)
Q Consensus 277 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 352 (696)
...|+.+.. .+...|..+...+.+.|++++|++.|+++... .|+ ...+..+...+...|+.+.|...+..+...
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999988763 35667888888899999999999999998864 444 456677788888999999999999888776
Q ss_pred CCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCC----CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005454 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR----NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428 (696)
Q Consensus 353 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 428 (696)
...+.. .+..+. .+...|++++|...++.+.+. +...+..+...+...|++++|+..|+++.+.. +.+...+.
T Consensus 174 ~P~~~~-a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 VPPRGD-MIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred CCCCHH-HHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 654333 333333 478899999999999986542 23344556778899999999999999999853 33456777
Q ss_pred HHHHHHhcCCcHHH----HHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHH
Q 005454 429 SVLSACLHADLFER----GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKPN-SLIWSTLLSVC 502 (696)
Q Consensus 429 ~ll~a~~~~g~~~~----a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~ 502 (696)
.+...+...|++++ |...|+++.+. -+.+...+..+..++.+.|++++|...+++.. ..|+ ..++..+..++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 78888999999986 89999988762 23346788999999999999999999998753 3454 55788889999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
...|++++|...++++++.+|.++..+..++.++...|++++|...+++..+..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999988777778999999999999999999887654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.5e-15 Score=161.80 Aligned_cols=430 Identities=12% Similarity=0.070 Sum_probs=267.6
Q ss_pred HHHHHccCChhHHHHHHhcCCCCCcc---hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHH-HH--HHHHHccC
Q 005454 97 LSAHARSGSVQDLRALFDKMPIRDSV---SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHV-SA--LNACAQLL 170 (696)
Q Consensus 97 i~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~l--l~~~~~~~ 170 (696)
+-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+. .+ ...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcC
Confidence 34557889999999999988743222 23388888888899999999999887 34333332 23 44677789
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCCh--hHHHHHHHHHHhCCCchHHHHHHHHH
Q 005454 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL--VSWNLMISGYLKNGQPKKCIDLFQEM 248 (696)
Q Consensus 171 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m 248 (696)
+++.|.++++.+++.... ++.++..++..|...++.++|++.++++...+. ..+-.++..+...++..+|++.++++
T Consensus 117 dyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999999999888644 467777888889999999999999999887433 33433333333355665699999999
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchH
Q 005454 249 QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK-DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327 (696)
Q Consensus 249 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 327 (696)
.+.. +-+...+..+..++.+.|-...|.++..+-+.- +...+.-+ +.+.|.+..+.. ..|+..
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a----~~~~~~--- 259 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMA----VLPTRS--- 259 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhc----cccccc---
Confidence 8864 334566677788888888888888877765521 11111111 011111111111 111000
Q ss_pred HHHHHHHhhcC---chhHHHHHHHHHHh-CCCCc--hHHHHHH---HhhHHhcCChHHHHHHHhcCCCCC----chHHHH
Q 005454 328 SVVSSCAKLAS---LYHGQVVHGKAVVL-GVDDD--LLVSSAL---IDMYCKCGVTDDAWTVFNMMPTRN----VVSWNS 394 (696)
Q Consensus 328 ~ll~~~~~~~~---~~~a~~~~~~~~~~-~~~~~--~~~~~~l---i~~y~~~g~~~~A~~~~~~~~~~~----~~~~~~ 394 (696)
...+ .+.|..-++.+... +..|. .....+. +-++.+.|++.++++.|+.+.... ..+-..
T Consensus 260 -------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 260 -------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred -------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 0001 12222222332221 11111 1112222 234556677777777777776322 224455
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhC----------CCCC
Q 005454 395 MINGYAQNGQDLEALALYDKLLQEN-----LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG----------ITPS 459 (696)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~ 459 (696)
+..+|...+++++|+.+|+++.... ..++......|..++..++++++|..+++.+.+... -.|+
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 6677777777777777777775532 122233345677777777777777777777765211 0122
Q ss_pred ---hHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 460 ---LDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 460 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
...+..++..+...|++.+|++.++++.. +-|...+..+...+...|...+|+..++.+..++|++..+...++.
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 13344456667777888888877776532 2356677777777777888888888887777777877777777788
Q ss_pred HHhhcCChhHHHHHHHHhhh
Q 005454 535 MYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 535 ~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+...|+|++|.++.+.+.+
T Consensus 493 ~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHh
Confidence 88888888888777766654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.1e-15 Score=155.03 Aligned_cols=512 Identities=14% Similarity=0.126 Sum_probs=376.7
Q ss_pred CchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccC---ChHHHHHHHccCC---CCCcchHHHHHHHHHccCChhHHH
Q 005454 37 NDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG---KLFYARDLFDKMP---LRDIISWNALLSAHARSGSVQDLR 110 (696)
Q Consensus 37 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 110 (696)
..+....|+..+.++++.+|....++-.|.-.-.... .+..+..++.+.- ..|+++.+.|.+.|.--|++..+.
T Consensus 211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHH
Confidence 5677888999999999888743244333333333333 3445555555543 248999999999999999999999
Q ss_pred HHHhcCCCCC------cchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchH--HHHHHHHHccCChHHHHHHHHHH
Q 005454 111 ALFDKMPIRD------SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH--VSALNACAQLLDLRRGKQIHGKI 182 (696)
Q Consensus 111 ~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~ 182 (696)
.+...+...+ ..+|-.+.++|-..|++++|...|.+..+. .||.+++ .-+...+...|+++.+...|+.+
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 9988776432 346888999999999999999999888754 5666544 45677889999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHcCC----CHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCCchHHHHHHHHH----HHc
Q 005454 183 VVGNLGGNVFVRNALTDMYAKGG----EIDKARWLFDRMNNR---NLVSWNLMISGYLKNGQPKKCIDLFQEM----QLL 251 (696)
Q Consensus 183 ~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~ 251 (696)
.+.. +.+..+...|...|...+ ..+.|..++.+...+ |...|-.+...|.+. ++..++..|... ...
T Consensus 369 ~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 369 LKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESK 446 (1018)
T ss_pred HHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHc
Confidence 9875 446667777777777765 567788888777663 455676666666554 444447766654 455
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCC-------Ch------hHHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 005454 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK-------DN------VCWTTMIVGYTQNGKEEDALILFNEMLSED 318 (696)
Q Consensus 252 g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 318 (696)
+-++.....|.+...+...|.++.|...|.+.... |. .+--.+...+-..++++.|.+.|..+...
T Consensus 447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke- 525 (1018)
T KOG2002|consen 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE- 525 (1018)
T ss_pred CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-
Confidence 66677888999999999999999999999876522 22 12334566677788999999999999874
Q ss_pred CCCCccc-hHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC-----CCCchHH
Q 005454 319 VRPDKFS-ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-----TRNVVSW 392 (696)
Q Consensus 319 ~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~ 392 (696)
.|.-+. |.-++......+...+|...+..+....- .++.+++.+.+.|.+...+.-|.+-|..+. .+|..+.
T Consensus 526 -hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 526 -HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred -CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 344332 22232222334678888888888887543 467777778889999988888888665543 2466666
Q ss_pred HHHHHHHHH------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh
Q 005454 393 NSMINGYAQ------------NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460 (696)
Q Consensus 393 ~~li~~~~~------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 460 (696)
-+|.+.|.+ .+..++|+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|.+..+. .....
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~ 680 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFE 680 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCC
Confidence 566665542 345678999999988853 445677777878889999999999999999874 33456
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLP----HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 536 (696)
.+|-.+...|..+|++-.|+++|+... .+.+..+...|..++...|.+.+|.+.+..+..+.|.++..-..++-+.
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 778889999999999999999997632 2457778899999999999999999999999999999988766665554
Q ss_pred hh-------------------cCChhHHHHHHHHhhhCCCc
Q 005454 537 AA-------------------CGRWEDVASIRSSMKSKNVK 558 (696)
Q Consensus 537 ~~-------------------~g~~~~A~~~~~~m~~~~~~ 558 (696)
.+ .+..++|.++|..|...+-+
T Consensus 761 kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 761 KKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33 34567888888888765543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-14 Score=158.70 Aligned_cols=445 Identities=10% Similarity=0.046 Sum_probs=308.9
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCCCCcch---HHHHHHHHHccCChhHHHHHHhcCCCCCcchH-HHH--HHHHHh
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS---WNALLSAHARSGSVQDLRALFDKMPIRDSVSY-NTA--IAGFAN 133 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~l--i~~~~~ 133 (696)
..|...| ...+.|+++.|...|++..+.++.. ...++..+...|+.++|+..+++...|+...+ ..+ ...|..
T Consensus 36 ~~y~~ai-i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 36 TQYDSLI-IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHH-HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 4444444 4458999999999999998754442 34888999999999999999999987744443 333 447788
Q ss_pred CCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHH
Q 005454 134 KGFSREALQVFSRMQKDRFEPT-DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212 (696)
Q Consensus 134 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 212 (696)
.|++++|+++|+++.+. .|+ ...+..++..+...++.++|.+.+..+.+.. |+...+..++..+...++..+|++
T Consensus 115 ~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 115 EKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred cCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHH
Confidence 89999999999999976 344 4556677788889999999999999998764 445555556666666777767999
Q ss_pred HHHhcCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChh
Q 005454 213 LFDRMNN--R-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289 (696)
Q Consensus 213 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 289 (696)
.++++.+ | +...+..+..++.+.|-...|+++..+ .|+.++-...... ..+.|.+..+....++..
T Consensus 191 ~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 191 ASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhccccccc
Confidence 9999976 4 456778888999999999999988765 3443332222110 111222222111101000
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccC-CCCCCccc-h----HHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHH
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFS-I----SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t-~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 363 (696)
.-. +---.+.|+.-++.+... +..|.... | .--+-++...++..+++..++.+...+.+....+-.+
T Consensus 260 ----~~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 260 ----ETE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred ----chh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 000 000124455555554431 11122111 1 1234456667777777777777777776655667777
Q ss_pred HHhhHHhcCChHHHHHHHhcCCCC---------CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCC
Q 005454 364 LIDMYCKCGVTDDAWTVFNMMPTR---------NVVSWNSMINGYAQNGQDLEALALYDKLLQENL-----------KPD 423 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p~ 423 (696)
+.++|...++.++|..+|+.+... +......|.-+|...+++++|..+++++.+... .||
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 888888888888888888776421 222346677888888888888888888877311 122
Q ss_pred --HH-HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCC-HHHHHHH
Q 005454 424 --SF-TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPN-SLIWSTL 498 (696)
Q Consensus 424 --~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~l 498 (696)
-. .+..++..+...|++.+|++.++.+.. .-+-|......+.+++...|.+.+|++.++.... .|+ ..+....
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 22 344456678889999999999999975 4556788899999999999999999999987543 454 4577778
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCchH
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
+.+....+++++|+.+.+.+++..|+++.+-
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 8888899999999999999999999988553
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-12 Score=127.26 Aligned_cols=465 Identities=14% Similarity=0.077 Sum_probs=384.1
Q ss_pred HHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHH----hHHCCCCCCcchHHHHHHHHHc
Q 005454 96 LLSAHARSGSVQDLRALFDKMPI---RDSVSYNTAIAGFANKGFSREALQVFSR----MQKDRFEPTDYTHVSALNACAQ 168 (696)
Q Consensus 96 li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~~~~~ 168 (696)
|.-+|++..-++.|.+++++..+ .+...|-+-...--.+|+.+....+..+ +...|+..|...|..=..+|-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 34466777778888888877653 4777888888877889998888887655 4567889999999988899999
Q ss_pred cCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHH
Q 005454 169 LLDLRRGKQIHGKIVVGNLGG--NVFVRNALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCID 243 (696)
Q Consensus 169 ~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 243 (696)
.|..-.+..|....+..|++. -..+|+.-.+.|.+.+.++-|+.+|....+ .+...|...+..--..|..++-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 999999999999888888753 346788888899999999999999988876 456678887777777899999999
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCC
Q 005454 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320 (696)
Q Consensus 244 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 320 (696)
+|++.... ++-....|......+-..|++..|+.++.+.-+ .+...|-+-+.....+.++++|..+|.+... ..
T Consensus 572 llqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~s 648 (913)
T KOG0495|consen 572 LLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--IS 648 (913)
T ss_pred HHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence 99999876 344555666666678888999999999988764 3566798999999999999999999999885 56
Q ss_pred CCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC--C-CchHHHHHHH
Q 005454 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--R-NVVSWNSMIN 397 (696)
Q Consensus 321 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 397 (696)
|+...|..-+..--.++..++|.++++..++.-. .-...|-.+...+-+.++++.|...|..-.+ | .+..|-.+..
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 7777777777777778999999999999988643 3466788889999999999999999986653 3 4557888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHH
Q 005454 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477 (696)
Q Consensus 398 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 477 (696)
.--+.|+.-.|..++++..-.+ +-|...|...++.-.+.|+.++|..+..++.+ ..+.+...|..-|.+..+.++-.
T Consensus 728 leEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccch
Confidence 8888999999999999998865 55678899999999999999999999999987 56677788999999999999988
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 478 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
.+.+.+++....| .+..++...+.....++.|..-|+++++.+|++..+|..+...+...|.-++-.+++++....
T Consensus 805 ks~DALkkce~dp--hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~-- 880 (913)
T KOG0495|consen 805 KSIDALKKCEHDP--HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA-- 880 (913)
T ss_pred HHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--
Confidence 8888888876554 455567777888899999999999999999999999999999999999999999999877653
Q ss_pred cCCCceeEEEECCE
Q 005454 558 KKFAAYSWIEIDNK 571 (696)
Q Consensus 558 ~~~~~~s~i~~~~~ 571 (696)
.|..|..|..+...
T Consensus 881 EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 881 EPTHGELWQAVSKD 894 (913)
T ss_pred CCCCCcHHHHHhhh
Confidence 35567788765443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-11 Score=127.82 Aligned_cols=479 Identities=13% Similarity=0.092 Sum_probs=315.1
Q ss_pred HccCChHHHHHHHccCCCC---CcchHHHHHHHHHccCChhHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHH
Q 005454 70 AKSGKLFYARDLFDKMPLR---DIISWNALLSAHARSGSVQDLRALFDKM---PIRDSVSYNTAIAGFANKGFSREALQV 143 (696)
Q Consensus 70 ~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l 143 (696)
...|++++|.+++.++++. +...|-.|...|-..|+.+++...+-.. ...|...|-.+.....+.|++.+|.-.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3448888888888887753 5677888888888888888887765433 344667788888888888888888888
Q ss_pred HHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHH----HHHHHHHcCCCHHHHHHHHHhcCC
Q 005454 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN----ALTDMYAKGGEIDKARWLFDRMNN 219 (696)
Q Consensus 144 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~ 219 (696)
|.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-.. ..+..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888752 3333333444556677888888888888887765433333222 234556667777888888877654
Q ss_pred -----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcC---------------------------CCCCcchHHHHHHHH
Q 005454 220 -----RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG---------------------------LNPDEVTVSNILGAC 267 (696)
Q Consensus 220 -----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------------------------~~p~~~t~~~ll~~~ 267 (696)
-+...+|.++..|.+...++.|......+.... +.++...+ -+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhh
Confidence 234568888888888888888888888776611 22222221 111223
Q ss_pred H--hcCCHHHHHHHHHhcc----CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchh
Q 005454 268 F--QTGRIDDAGRLFHVIK----EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341 (696)
Q Consensus 268 ~--~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 341 (696)
. +.+...+++.-|.... ..++..|.-+..+|.+.|++.+|+.+|..+......-+...|..+..++...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 3 3344444443332222 224557888999999999999999999999876555567788889999999999999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCch------------HHHHHHHHHHHcCChHHHH
Q 005454 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV------------SWNSMINGYAQNGQDLEAL 409 (696)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~A~ 409 (696)
|.+.+..++...+. +..+-..|...|.+.|+.++|.+++..+..||.. .--.....|.+.|+.++=+
T Consensus 468 A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999987654 5666778889999999999999999998766522 1122345567788887766
Q ss_pred HHHHHHHHCC-----CCC-----------------CHHHHHHHHHHHhcCCcHHHHHHHH-----HHhHHhhCCCCC--h
Q 005454 410 ALYDKLLQEN-----LKP-----------------DSFTFVSVLSACLHADLFERGQNHF-----DSISAVHGITPS--L 460 (696)
Q Consensus 410 ~l~~~m~~~g-----~~p-----------------~~~t~~~ll~a~~~~g~~~~a~~~~-----~~m~~~~~~~p~--~ 460 (696)
.+-.+|+..+ +.| ...+...++.+-.+.++........ .......++.-+ -
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 6555554321 112 1122223333333333211111100 011111244433 2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCCC-----CCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCc
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLPH-----KPNS---LIWSTLLSVCAMKGDIKHGEMAARHLFEL-----EPINAG 527 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~ 527 (696)
..+.-++..+.+.|++++|+.+...+.. .++. ..-...+.++...++...|...++.++.. +|--..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 5667788899999999999999876532 2222 12344566677889999999999999887 666566
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHH
Q 005454 528 PYIMLSNMYAACGRWEDVASIRSS 551 (696)
Q Consensus 528 ~~~~l~~~~~~~g~~~~A~~~~~~ 551 (696)
.|+...+...+.|+----.+++..
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~ 730 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMR 730 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677666666666654433344333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-13 Score=130.83 Aligned_cols=473 Identities=12% Similarity=0.072 Sum_probs=300.1
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCCCCcch-----HHHHHHHHHccCChhHHHHHHhcCC----CCC----cchHHH
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS-----WNALLSAHARSGSVQDLRALFDKMP----IRD----SVSYNT 126 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~f~~~~----~~~----~~~~~~ 126 (696)
.++..|.+-|.......+|...++-+.+...+. --.+.+.|.+...+.+|++.+.... .-+ +...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 455667788888888899999988877532221 1224567888889999999876543 222 223455
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhH--------HHHHH
Q 005454 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV--------RNALT 198 (696)
Q Consensus 127 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--------~~~li 198 (696)
+--.|.+.|.++.|+.-|+...+. .||..+-..|+-.+-..|+-+..++.|..++.....+|..- -..|+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 555688999999999999998865 68877766666666677899999999999987643332221 11222
Q ss_pred HHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHh---CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHH
Q 005454 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK---NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275 (696)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 275 (696)
.--.+...+...++--..+.++-+.|-.-+|.-... .--.+-+++.++.-....+..+ .-..-...|.+.|+++.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d--lei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID--LEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh--hhhhHHHHHHhccCHHH
Confidence 222121111111000000000000000000000000 0001112222221111000000 00011123778888998
Q ss_pred HHHHHHhccCCChhHHHH----HHHH-HHh-cCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHH
Q 005454 276 AGRLFHVIKEKDNVCWTT----MIVG-YTQ-NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349 (696)
Q Consensus 276 A~~~~~~~~~~~~~~~~~----li~~-~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 349 (696)
|.+++.-+..+|..+-++ |-.. |.+ ..++..|...-+..+.. -+-+......-.......|+++.|...++++
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-DRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-cccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 888888777665443222 2222 222 33556666655554432 1111111111122233468899999999988
Q ss_pred HHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 005454 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426 (696)
Q Consensus 350 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 426 (696)
+...-......|| +.-.+.+.|++++|+..|-++. ..++.....+...|-...+...|++++-+.... ++.|+..
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 8754433333333 3335778999999999998765 456777778888999999999999999887763 4555678
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-Hh
Q 005454 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKPNSLIWSTLLSVC-AM 504 (696)
Q Consensus 427 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-~~ 504 (696)
+..|...|-+.|+-.+|.+++..--+ -++-+.++..-|...|....-+++|+.+|++. ..+|+..-|..++..| ++
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 88888999999999999987765443 45667888888888999999999999999885 4589999999998877 56
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 005454 505 KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541 (696)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (696)
.|++++|..+++......|.+......|..+....|.
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 7999999999999999999999999999988888874
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-12 Score=122.87 Aligned_cols=430 Identities=14% Similarity=0.173 Sum_probs=275.2
Q ss_pred HHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcc-cHHHHHHHH--HHccCCh-HHHHHHHccCCC---CCcchHHHHH
Q 005454 25 AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT-FLHNRLLHF--YAKSGKL-FYARDLFDKMPL---RDIISWNALL 97 (696)
Q Consensus 25 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~--~~~~g~~-~~a~~~~~~~~~---~~~~~~~~li 97 (696)
+=+.|++--. .+....+.-++..+...|.+.+ .+--.|+.. |....++ -.-++.|-.|.. ....+|
T Consensus 118 ~E~nL~kmIS---~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 118 TENNLLKMIS---SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred chhHHHHHHh---hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 4455555443 4455556666666666666655 444444332 2223333 233445655554 244455
Q ss_pred HHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHH
Q 005454 98 SAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177 (696)
Q Consensus 98 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 177 (696)
|.|.+.+ -+|+. ..++..+|..||.++++-...+.|.+++++......+.+..+|+.+|.+.+-. .++.
T Consensus 191 ----K~G~vAd--L~~E~-~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD--LLFET-LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKK 259 (625)
T ss_pred ----ccccHHH--HHHhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHH
Confidence 4455444 34444 44456788999999999988999999999988877888888999988876533 3378
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHH----HHHhcCC----CChhHHHHHHHHHHhCCCchH-HHHHHHHH
Q 005454 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW----LFDRMNN----RNLVSWNLMISGYLKNGQPKK-CIDLFQEM 248 (696)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~~~~----~~~~~~~~li~~~~~~g~~~~-A~~l~~~m 248 (696)
+..+|+...+.||..++|+++.+.++.|+++.|.+ ++.+|++ |...+|..+|..+.+.+++.+ |..++.+.
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 88888888889999999999999999998876654 4455543 788889999998888888754 33344443
Q ss_pred H----HcCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHhccCC-----------ChhHHHHHHHHHHhcCChhHHHH
Q 005454 249 Q----LLGLNP----DEVTVSNILGACFQTGRIDDAGRLFHVIKEK-----------DNVCWTTMIVGYTQNGKEEDALI 309 (696)
Q Consensus 249 ~----~~g~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~ 309 (696)
. .+.++| |..-|...+..|.+..+.+-|.++..-+... ...-|..+....++....+.-+.
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~ 419 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLK 419 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 233443 3445667777788888888888887665532 12236667788899999999999
Q ss_pred HHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCc
Q 005454 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389 (696)
Q Consensus 310 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 389 (696)
.|+.|.-.-.-|+..+...++++....+.++-..+++..++..|.........-+...+++.. ..|+.
T Consensus 420 ~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~t 487 (625)
T KOG4422|consen 420 WYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLT 487 (625)
T ss_pred HHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCC
Confidence 999999888889999999999999999999999999999988875544333333333333221 01221
Q ss_pred hHHHHHHHHHHHc-CChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHH-
Q 005454 390 VSWNSMINGYAQN-GQDLE-ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM- 466 (696)
Q Consensus 390 ~~~~~li~~~~~~-g~~~~-A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l- 466 (696)
..-..+-...++. -++.+ ....-.+|.+..+.|. ..+.++-.+.+.|..++|.++|..+.+.++-.|.....++|
T Consensus 488 p~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~ 565 (625)
T KOG4422|consen 488 PEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA 565 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence 1111111111110 01111 1222334444444443 34444445677888888888888776555555555555544
Q ss_pred --HHHHhccCCHHHHHHHHHhC
Q 005454 467 --INLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 467 --i~~~~~~g~~~~A~~~~~~~ 486 (696)
++.-.+......|...++-+
T Consensus 566 El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 566 ELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 44455667777777777655
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.1e-12 Score=120.75 Aligned_cols=413 Identities=11% Similarity=0.063 Sum_probs=271.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHhhccCchhHHHHHH-HhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCC
Q 005454 9 QAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQ-SHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL 87 (696)
Q Consensus 9 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 87 (696)
=+++.|++.|++.++..-..|++-.+.....+..-+.+ .+..+.+.|-++..+| +.|++.+ ++-+...
T Consensus 136 ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~vAd---L~~E~~P 204 (625)
T KOG4422|consen 136 ILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAVAD---LLFETLP 204 (625)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccHHH---HHHhhcC
Confidence 46788999999999988888888766444444443332 2333444443333333 4565544 4444555
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHhcCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHH
Q 005454 88 RDIISWNALLSAHARSGSVQDLRALFDKMPI----RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163 (696)
Q Consensus 88 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 163 (696)
+...++..||.+.+|--..+.|+.++.+-.. -+..++|.+|.+-+-.. ..+++.+|....+.||..||++++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence 5778999999999999999999999998864 36678898887644332 278999999999999999999999
Q ss_pred HHHHccCChHH----HHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHH-HHHHHHHhcCC------------CChhHHH
Q 005454 164 NACAQLLDLRR----GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID-KARWLFDRMNN------------RNLVSWN 226 (696)
Q Consensus 164 ~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~------------~~~~~~~ 226 (696)
++.++.|+++. +.+++.+|.+.|++|...+|..+|..+.+.++.. .|..++..+.. .|...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999998776 4678899999999999999999999999888764 35544444421 3455678
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcC----CCCC---cchHHHHHHHHHhcCCHHHHHHHHHhccC----CChhHHHHHH
Q 005454 227 LMISGYLKNGQPKKCIDLFQEMQLLG----LNPD---EVTVSNILGACFQTGRIDDAGRLFHVIKE----KDNVCWTTMI 295 (696)
Q Consensus 227 ~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~---~~t~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li 295 (696)
..+..|.+..+.+-|.++-.-+.... +.|+ .+-|..+..+.+.....+.-...++.|.+ ++..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 88888888888888888766554321 3333 23467777788888999999999999885 3556666777
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC-Ch
Q 005454 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG-VT 374 (696)
Q Consensus 296 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~ 374 (696)
.+..-.|.++-.-+++.++...|...+... .+.++..+.+..+.|+...-..+-...+++- ++
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLARDKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 788888888888888888877654333222 2333333444333333222222222222221 11
Q ss_pred HHH-HHHHhcCC--CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 005454 375 DDA-WTVFNMMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN----LKPDSFTFVSVLSACLHADLFERGQNHF 447 (696)
Q Consensus 375 ~~A-~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 447 (696)
.++ ...-.++. +-.....+.+...+.+.|..++|.++|.-..+.+ ..|......-++.+-.......+|...+
T Consensus 505 ~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~l 584 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVL 584 (625)
T ss_pred HHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 111 01111111 2233455556666667777777777777765443 2233333445555666667777777777
Q ss_pred HHhHH
Q 005454 448 DSISA 452 (696)
Q Consensus 448 ~~m~~ 452 (696)
+-|..
T Consensus 585 Q~a~~ 589 (625)
T KOG4422|consen 585 QLASA 589 (625)
T ss_pred HHHHH
Confidence 76654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-11 Score=126.52 Aligned_cols=516 Identities=14% Similarity=0.157 Sum_probs=318.4
Q ss_pred CchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHcc---CCCCCcchHHHHHHHHHccCChhHHHHHH
Q 005454 37 NDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK---MPLRDIISWNALLSAHARSGSVQDLRALF 113 (696)
Q Consensus 37 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~f 113 (696)
..|+...|..+.+.+++..|.....|-.|...|-+.|+..++...+-. ....|...|-.+.....+.|+++.|+-.|
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 458999999999999999998889999999999999999998875433 34458899999999999999999999999
Q ss_pred hcCCCCCcchHH---HHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hH----HHHHHHHHccCChHHHHHHHHHHHHc
Q 005454 114 DKMPIRDSVSYN---TAIAGFANKGFSREALQVFSRMQKDRFEPTDY-TH----VSALNACAQLLDLRRGKQIHGKIVVG 185 (696)
Q Consensus 114 ~~~~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~----~~ll~~~~~~~~~~~a~~~~~~~~~~ 185 (696)
.+..+.+..-|- --+..|-+.|+...|++-|.++.+... |... -+ -.++..+...++-+.|.+.+......
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 998764443343 345678889999999999999987632 3322 22 23445566667778888887776653
Q ss_pred -CCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--------------------------CChhHHH----HHHHHHHh
Q 005454 186 -NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN--------------------------RNLVSWN----LMISGYLK 234 (696)
Q Consensus 186 -g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~----~li~~~~~ 234 (696)
+-..+...++.++.+|.+...++.|......+.. ++..+|+ -++-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 3344566778888889888888888776655432 1111111 11222333
Q ss_pred CCCchHHHHHHHHHHHcC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCC----ChhHHHHHHHHHHhcCChhHHH
Q 005454 235 NGQPKKCIDLFQEMQLLG--LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK----DNVCWTTMIVGYTQNGKEEDAL 308 (696)
Q Consensus 235 ~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~ 308 (696)
....+....+.....+.. +.-+...|.-+..+|...|++.+|..+|..+... +...|-.+..+|...|..++|+
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 333333333334444444 2333445666666677777777777777666532 4456666667777777777777
Q ss_pred HHHHHhccCCCCCCc-cchHHHHHHHHhhcCchhHHHHHHHHH--------HhCCCCchHHHHHHHhhHHhcCChHHHHH
Q 005454 309 ILFNEMLSEDVRPDK-FSISSVVSSCAKLASLYHGQVVHGKAV--------VLGVDDDLLVSSALIDMYCKCGVTDDAWT 379 (696)
Q Consensus 309 ~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 379 (696)
+.|...+.. .|+. ..-.++-..+...|+.++|.+.+..+. ..+..|+..+.-...+.|.+.|+.++=..
T Consensus 470 e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 470 EFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 777666642 3332 233344445556666666666666532 22233344444444455555555443222
Q ss_pred HHhcCC-----------------------------------------------------------------CCCchHH--
Q 005454 380 VFNMMP-----------------------------------------------------------------TRNVVSW-- 392 (696)
Q Consensus 380 ~~~~~~-----------------------------------------------------------------~~~~~~~-- 392 (696)
+-..|. .-...-|
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 111110 0011122
Q ss_pred --HHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHH--HH-HHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC---hHH
Q 005454 393 --NSMINGYAQNGQDLEALALYDKLLQENL--KPDSF--TF-VSVLSACLHADLFERGQNHFDSISAVHGITPS---LDH 462 (696)
Q Consensus 393 --~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~ 462 (696)
.-++.++++.++.++|+.+...+..... .++.. .+ ...+.++...+++..|..++..|...++...+ ...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3457788899999999999988877542 22221 22 33456677889999999999988875443322 234
Q ss_pred HHHHHHHHh-----------------------------------ccCCHHHHHHHHHh-CCCCCCHHHHHHHHHHH----
Q 005454 463 YACMINLLG-----------------------------------RSSDVDKAVDLIKS-LPHKPNSLIWSTLLSVC---- 502 (696)
Q Consensus 463 ~~~li~~~~-----------------------------------~~g~~~~A~~~~~~-~~~~p~~~~~~~ll~~~---- 502 (696)
|++....+. ..+.+..|+..+-+ ....||....+.++..-
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 443222222 23444555443322 11234433333322211
Q ss_pred -------HhcCChHHHHHHHHHHHhcCCC--CCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 503 -------AMKGDIKHGEMAARHLFELEPI--NAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 503 -------~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
.+|-.+-.+...+.+-.++... ...++..++.+|-..|-..-|..++++..+-
T Consensus 788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 1222344566666666665533 5678899999999999999999999988763
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-10 Score=114.68 Aligned_cols=479 Identities=12% Similarity=0.093 Sum_probs=372.6
Q ss_pred hHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCC---CCcchHHHHHHHHHccCChhHHHHHHhcC
Q 005454 40 ELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL---RDIISWNALLSAHARSGSVQDLRALFDKM 116 (696)
Q Consensus 40 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 116 (696)
+...|+-++.++...-|.+.. |..+|++..-++.|.++++...+ .+...|.+-...--..|+.+...++.++-
T Consensus 391 ~~~darilL~rAveccp~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred ChHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444466666666665544323 44556667778888888887764 48888887777777889998888888764
Q ss_pred C--------CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCc--chHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 005454 117 P--------IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD--YTHVSALNACAQLLDLRRGKQIHGKIVVGN 186 (696)
Q Consensus 117 ~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 186 (696)
. .-|...|-.=...+-..|..-.+..+......-|+.-.. .||..-...|.+.+.++-++.+|...++.
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv- 545 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV- 545 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-
Confidence 3 124455666666777778887788888777776665433 48888889999999999999999999886
Q ss_pred CCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHH
Q 005454 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263 (696)
Q Consensus 187 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 263 (696)
++.+..+|...+..--..|..+.-..+|++... ...+.|-...+.+...|+...|..++....+.. +-+...|..-
T Consensus 546 fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaa 624 (913)
T KOG0495|consen 546 FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAA 624 (913)
T ss_pred ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 355778888888887788999999999988865 455678778888999999999999999998875 3367788888
Q ss_pred HHHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcCch
Q 005454 264 LGACFQTGRIDDAGRLFHVIKE--KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLASLY 340 (696)
Q Consensus 264 l~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~ 340 (696)
+........++.|+.+|.+... ++...|.--+....-.++.++|++++++.++. -|+ ...|..+.+.+-+.++++
T Consensus 625 vKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHH
Confidence 8889999999999999988764 56667877777777889999999999998874 344 345666777788888889
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005454 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
.|+..|..-.+.- +..+..|-.|...-.+.|.+-.|..+|++.. ..|...|-..|..-.+.|..+.|..+.-+.++
T Consensus 703 ~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 703 MAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888887665543 3467788889999999999999999999776 35778999999999999999999999988887
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCH-HHH
Q 005454 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKPNS-LIW 495 (696)
Q Consensus 418 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~ 495 (696)
. .+-+...|..-|...-+.++-......+. ...-|..+.-.+..+|-...++++|.+.|.+. ...||. .+|
T Consensus 782 e-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 782 E-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred h-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 5 34455667666666656555433333332 34556777778888999999999999999874 445654 489
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 496 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
.-+..-+..||.-+.-..++.+...-+|.....|...+.
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 889999999999999999999999999988877776653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-11 Score=129.54 Aligned_cols=233 Identities=12% Similarity=0.058 Sum_probs=131.3
Q ss_pred chHHHHHHHHhhcCchhHHHHHHHHHHh--CCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-----CC-chHHHHHH
Q 005454 325 SISSVVSSCAKLASLYHGQVVHGKAVVL--GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-----RN-VVSWNSMI 396 (696)
Q Consensus 325 t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-~~~~~~li 396 (696)
.|..++.-+.....++.|..+.++.... .+..|...+..+.+...+.+...++..++.++.+ ++ ..+.--++
T Consensus 493 ~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~l 572 (1088)
T KOG4318|consen 493 LYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLL 572 (1088)
T ss_pred HHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHH
Confidence 3555666666666666666666655432 2334556677778888888888888888877763 11 12333455
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCC------------------------------CCHHHHHHHHHHH------------
Q 005454 397 NGYAQNGQDLEALALYDKLLQENLK------------------------------PDSFTFVSVLSAC------------ 434 (696)
Q Consensus 397 ~~~~~~g~~~~A~~l~~~m~~~g~~------------------------------p~~~t~~~ll~a~------------ 434 (696)
.+.+..|+.+...++++-+...|+. |.+.....+.+..
T Consensus 573 ns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~m 652 (1088)
T KOG4318|consen 573 NSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTM 652 (1088)
T ss_pred hhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHH
Confidence 5556666666666666555544422 2211111111111
Q ss_pred ---------hcCCcHHHHHHHHHHh--HHhhC---------CCCC---------hHHHHHHHHHHhccCCHHHHHHHHHh
Q 005454 435 ---------LHADLFERGQNHFDSI--SAVHG---------ITPS---------LDHYACMINLLGRSSDVDKAVDLIKS 485 (696)
Q Consensus 435 ---------~~~g~~~~a~~~~~~m--~~~~~---------~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~ 485 (696)
.+.|++.++.++.+-= ..+++ +.|- ......|+..|.+.|+++.|..++.+
T Consensus 653 Dls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK 732 (1088)
T KOG4318|consen 653 DLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNK 732 (1088)
T ss_pred hhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhh
Confidence 1112221221111100 00000 0000 01122366678888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 486 LPHKPNSLIWSTLLSVCAMKG---DIKHGEMAARHLFELEPINA---GPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 486 ~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
++..|+..+...|+..++++. |+-++....+++.++.|..+ ..|.-.+-...+....+-|.+.+.+..++..
T Consensus 733 ~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 733 DQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred CcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC
Confidence 887788887777777776654 45566666666666665443 3455556666666677788999999888744
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-14 Score=144.01 Aligned_cols=255 Identities=15% Similarity=0.123 Sum_probs=110.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHH-HHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC
Q 005454 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV-VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372 (696)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 372 (696)
+...+.+.|++++|++++++......+|+...|-.+ ...+...++.+.|...+..+...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 345566677777777777655443223444444333 33444567777777777777766544 45556666666 6888
Q ss_pred ChHHHHHHHhcCC--CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 005454 373 VTDDAWTVFNMMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERGQNHFDS 449 (696)
Q Consensus 373 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 449 (696)
++++|..++...- .++...+..++..+...++++++.++++++.... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888887654 3566778888888999999999999999977633 345666777788888999999999999999
Q ss_pred hHHhhCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 450 ISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 450 m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
..+. .| +......++..+...|+.+++.++++.... +.|...|..+..++...|+.++|...++++.+..|+|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9863 45 477888899999999999998777765422 34556788999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 527 GPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
.....+++++...|+.++|.+++++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987664
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-11 Score=118.77 Aligned_cols=403 Identities=14% Similarity=0.126 Sum_probs=249.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc-hhHHHHHHHHH
Q 005454 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPT-DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN-VFVRNALTDMY 201 (696)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 201 (696)
+...-.-|.++|.+++|++.|.+..+. .|| ...|...-.+|...|+++.+.+--...++.. |+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 444556688889999999999998864 677 5556666666778899988887777766543 33 34455556677
Q ss_pred HcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHH--------HHH-cC--CCCCcchHHHHHHHHHhc
Q 005454 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE--------MQL-LG--LNPDEVTVSNILGACFQT 270 (696)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--------m~~-~g--~~p~~~t~~~ll~~~~~~ 270 (696)
-..|++++|+.-. |-..+..++....-.--+.+++++ -.. .+ +-|+.....+....+-..
T Consensus 194 E~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 7788888776421 111222222222111112222221 111 11 223333333332221100
Q ss_pred CCHHHHHHHHHhccCCChhHHHHHHHHH----Hh-cCChhHHHHHHHHhccCC-CCCCcc---------chHHHHHH--H
Q 005454 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGY----TQ-NGKEEDALILFNEMLSED-VRPDKF---------SISSVVSS--C 333 (696)
Q Consensus 271 g~~~~A~~~~~~~~~~~~~~~~~li~~~----~~-~g~~~~A~~~~~~m~~~g-~~p~~~---------t~~~ll~~--~ 333 (696)
-. ..+..+...+...+..++ .. ...+.+|.+.+.+-.... ..++.- .-..++.+ .
T Consensus 265 ~~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 265 PK--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred cc--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 00 000000000111111111 00 012233333332211100 000000 11111111 2
Q ss_pred HhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHH
Q 005454 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALA 410 (696)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 410 (696)
.-.|+.-.+.+-++.+++....++. .|--+..+|....+.++-...|+... +.|+.+|..-...+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3357777788888888887655333 35556667888888888888888765 3466678777777888889999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CC
Q 005454 411 LYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PH 488 (696)
Q Consensus 411 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 488 (696)
=|++.++ +.|+. ..|..+--+..+.+.+++++..|+..++ .++.-++.|+-....+...+++++|.+.|+.. ..
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999988 56654 5777777777788899999999999987 55666789999999999999999999999763 33
Q ss_pred CCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 489 KPN---------SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 489 ~p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
+|+ +.+-.+++-. .-.+|+..|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 443 2333333333 244899999999999999999999999999999999999999999998764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-12 Score=121.00 Aligned_cols=442 Identities=13% Similarity=0.132 Sum_probs=289.0
Q ss_pred HHHHHH---HHhhccCchhHHHHHHHhhhhhccCCCcc--cHHHHHHHHHHccCChHHHHHHHccCCC--C------Ccc
Q 005454 25 AYTQLV---LDCTRVNDVELAKRLQSHMDLNFYEPNTT--FLHNRLLHFYAKSGKLFYARDLFDKMPL--R------DII 91 (696)
Q Consensus 25 ~~~~ll---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~--~------~~~ 91 (696)
||+.|+ +.+. .+.-..+|+..+.-+++...-|+ .+--.+-..+.+.+.+.+|++.+.-... | ...
T Consensus 200 tfsvl~nlaqqy~--~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 200 TFSVLFNLAQQYE--ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred hHHHHHHHHHHhh--hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 555444 3343 44556777777777776654444 4444456677888889999887765443 1 223
Q ss_pred hHHHHHHHHHccCChhHHHHHHhcCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCc------------c
Q 005454 92 SWNALLSAHARSGSVQDLRALFDKMP--IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD------------Y 157 (696)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------------~ 157 (696)
..+.+.-.+.+.|++++|+..|+... .||..+--.|+-++..-|+.++..+.|.+|..-...||. .
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44555556788999999999999875 467665445555566678899999999999764333332 2
Q ss_pred hHHHHHHH-----HHccC--ChHHHHHHHHHHHHcCCCCchh-------------HH--------HHHHHHHHcCCCHHH
Q 005454 158 THVSALNA-----CAQLL--DLRRGKQIHGKIVVGNLGGNVF-------------VR--------NALTDMYAKGGEIDK 209 (696)
Q Consensus 158 t~~~ll~~-----~~~~~--~~~~a~~~~~~~~~~g~~~~~~-------------~~--------~~li~~~~~~g~~~~ 209 (696)
..+..|.. .-+.+ +-+.+.-.-..++.--+.|+-. .+ -.-.--|.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 22222211 11111 1111111111111111111110 00 011235889999999
Q ss_pred HHHHHHhcCCCChhHHHHH-----HHHHHhC-CCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhc
Q 005454 210 ARWLFDRMNNRNLVSWNLM-----ISGYLKN-GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283 (696)
Q Consensus 210 A~~~~~~~~~~~~~~~~~l-----i~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 283 (696)
|.+++.-....|..+-.+. +--|.+- .++..|...-+...... .-+....+.-.......|++++|.+.+.+.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 9999888776554432222 2223333 34556665555443321 112222222222345679999999999998
Q ss_pred cCCChhHHHHHH---HHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHH
Q 005454 284 KEKDNVCWTTMI---VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360 (696)
Q Consensus 284 ~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 360 (696)
...|...-.+|. -.+-..|+.++|++.|-++..- +..+...+..+.+.|....+...|++++.++... ++.|+.+
T Consensus 517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 877665444433 3466789999999999887542 3445666777888888888999999988887654 4568899
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hc
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LH 436 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~ 436 (696)
.+-|.+.|-+.|+-..|.+.+-.-- ..|+.+..-|...|....-+++|+..|++..- +.|+..-|..++..| .+
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 9999999999999999988754332 45777777788888889999999999998876 799999998888765 46
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCC
Q 005454 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 475 (696)
.|+++.|.+++..+.+ .++-+.+...-|+...+..|.
T Consensus 673 sgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc
Confidence 8999999999999876 677788888888888877774
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-09 Score=107.01 Aligned_cols=480 Identities=14% Similarity=0.115 Sum_probs=330.9
Q ss_pred HHHHHHccCChHHHHHHHccCCC---CCcchHHHHHHHHHccCChhHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChh
Q 005454 65 LLHFYAKSGKLFYARDLFDKMPL---RDIISWNALLSAHARSGSVQDLRALFDKMPI--R-DSVSYNTAIAGFANKGFSR 138 (696)
Q Consensus 65 li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~ 138 (696)
..+.=-..+++..|..+|++... ++...|-.-+.+=.++..+..|+.+++.... | -...|--.+..--..|+..
T Consensus 79 YaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccH
Confidence 33444456778888889988875 4677787888888899999999999987642 2 1234555555556678899
Q ss_pred HHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 005454 139 EALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218 (696)
Q Consensus 139 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 218 (696)
.|.++|++-.+ ..|+...|.+.++.=.+.+.++.|+.+++..+-. .|++..|-.....=.++|.+..|+.+|+...
T Consensus 159 gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 159 GARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999988775 4799999999998888888999999999887764 4788888888888888999999999998776
Q ss_pred C--C----ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc---chHHHHHHHHHhcCCHHHHHHH--------HH
Q 005454 219 N--R----NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE---VTVSNILGACFQTGRIDDAGRL--------FH 281 (696)
Q Consensus 219 ~--~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~A~~~--------~~ 281 (696)
+ . +...+++....=.++..++.|.-+|+-.++. -|.. ..|......--+.|+....... ++
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 4 1 2234555555555677788888888877765 2332 3333333333344554433332 22
Q ss_pred hccCC---ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCcc-------chHHHHHHH---HhhcCchhHHHHHHH
Q 005454 282 VIKEK---DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF-------SISSVVSSC---AKLASLYHGQVVHGK 348 (696)
Q Consensus 282 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~~~~~~a~~~~~~ 348 (696)
.+... |-.+|-..+..--..|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+.+.+.++++.
T Consensus 313 ~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 313 KEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22222 5557777777777889999999999999875 666321 222222222 346788899999999
Q ss_pred HHHhCCCCchHHHHHHHhhH----HhcCChHHHHHHHhcCC--CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005454 349 AVVLGVDDDLLVSSALIDMY----CKCGVTDDAWTVFNMMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422 (696)
Q Consensus 349 ~~~~~~~~~~~~~~~li~~y----~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 422 (696)
.++. ++....++.-+=-+| .++.++..|.+++.... -|....+-..|..-.+.++++....+|++.++-+ +-
T Consensus 392 ~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe 469 (677)
T KOG1915|consen 392 CLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE 469 (677)
T ss_pred HHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence 8883 333455555554444 46889999999998765 3566677888888888999999999999999843 33
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCCHHHHHHHHHH
Q 005454 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPNSLIWSTLLSV 501 (696)
Q Consensus 423 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~ 501 (696)
|-.+|......-...|+.+.|..+|+-+.+...+......|.+.|+-=...|.++.|..+++++.. .+...+|-++..-
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~f 549 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKF 549 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 457777777766788999999999998887433333345677777777889999999999988644 4556677776543
Q ss_pred HH-----hcC-----------ChHHHHHHHHHHHhcC----CCCC--chHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 502 CA-----MKG-----------DIKHGEMAARHLFELE----PINA--GPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 502 ~~-----~~g-----------~~~~a~~~~~~~~~~~----p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
-. ..+ ++..|..+|+++...- |... ......-+.-...|.-.+...+-++|.
T Consensus 550 e~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 550 EASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred hccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 32 223 5678888888876533 2211 122233444455666666666666663
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-09 Score=105.77 Aligned_cols=191 Identities=9% Similarity=0.106 Sum_probs=117.8
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 435 (696)
.+...+.+-|.-.++.+.|...|++..+ .....|+-|..-|....+...|++-++..++-+ +-|...|-.|.++|.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 3444555566666666666666665543 233466666666776677777777777766642 445566667777777
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHH
Q 005454 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEM 513 (696)
Q Consensus 436 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~ 513 (696)
-.++..-|+-+|++... --+-|...|.+|.+.|.+.++.++|++-|++... ..+...+..|...+.+-++.++|..
T Consensus 410 im~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 66766667766666653 2233456677777777777777777777666433 2233566666777777777777777
Q ss_pred HHHHHHh-------cCCCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 514 AARHLFE-------LEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 514 ~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
.+++-++ .+|....+-.-|+.-+.+.++|++|..+....
T Consensus 488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 7766655 22333334445666677777777777665444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.4e-11 Score=123.34 Aligned_cols=283 Identities=11% Similarity=0.053 Sum_probs=190.6
Q ss_pred CCCHHHHHHHHHhcCCC--Chh-HHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHH--HHHHHHHhcCCHHHHHH
Q 005454 204 GGEIDKARWLFDRMNNR--NLV-SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS--NILGACFQTGRIDDAGR 278 (696)
Q Consensus 204 ~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~A~~ 278 (696)
.|+++.|++.+....+. ++. .|-.......+.|+++.|.+.+.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777765542 222 2322233446778888888888887663 45544333 22445667777777777
Q ss_pred HHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCC
Q 005454 279 LFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355 (696)
Q Consensus 279 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 355 (696)
.++.+.+ .++.....+...|.+.|++++|++++..+.+.+..++. ....+-
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------- 228 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------- 228 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-------------------------
Confidence 7776653 35556667777777777777777777777765433211 110000
Q ss_pred CchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005454 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432 (696)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 432 (696)
...+..++.......+.+...++++.++ +.++.....+...+...|+.++|.+++++..+. .||... .++.
T Consensus 229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~ 302 (398)
T PRK10747 229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLI 302 (398)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHH
Confidence 0122223333333445566666666665 346677888888999999999999999888873 455522 2334
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHH
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKPNSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a 511 (696)
+....++.+++.+..+...+. .+-|...+.++..++.+.|++++|.+.|+.. ...|+...+..|...+...|+.++|
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred hhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 444568899999999888863 3455667888899999999999999999875 4469999888999999999999999
Q ss_pred HHHHHHHHhcC
Q 005454 512 EMAARHLFELE 522 (696)
Q Consensus 512 ~~~~~~~~~~~ 522 (696)
...+++.+.+-
T Consensus 381 ~~~~~~~l~~~ 391 (398)
T PRK10747 381 AAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHhhh
Confidence 99999987754
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-10 Score=120.09 Aligned_cols=278 Identities=14% Similarity=0.106 Sum_probs=161.7
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHH
Q 005454 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213 (696)
Q Consensus 134 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 213 (696)
.|++++|.+.+....+..-.| ...|.....+..+.|+++.+...+..+.+................+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 577777777766655432111 1223333344467777888888887776643332223323446677888888888888
Q ss_pred HHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc-------chHHHHHHHHHhcCCHHHHHHHHHhc
Q 005454 214 FDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE-------VTVSNILGACFQTGRIDDAGRLFHVI 283 (696)
Q Consensus 214 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~A~~~~~~~ 283 (696)
++++.+ .+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 888765 35567778888888888888888888888877654322 12333344444445556666666666
Q ss_pred cC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHH
Q 005454 284 KE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360 (696)
Q Consensus 284 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 360 (696)
+. .++.....+...+...|+.++|.+++.+..+. .||.. ..++.+....++.+.+.+..+...+..+. |...
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l 330 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLL 330 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCC-CHHH
Confidence 52 35666777777777778888887777777652 33321 11122222335555555555555444332 3333
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcH
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 440 (696)
+..+...+.+.|++++|.+.|+...+ ..|+..++..+..++.+.|+.
T Consensus 331 -------------------------------~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 331 -------------------------------WSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred -------------------------------HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCH
Confidence 44444555555555555555555554 345555555555555555555
Q ss_pred HHHHHHHHHh
Q 005454 441 ERGQNHFDSI 450 (696)
Q Consensus 441 ~~a~~~~~~m 450 (696)
++|.+++++.
T Consensus 378 ~~A~~~~~~~ 387 (398)
T PRK10747 378 EEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-10 Score=118.70 Aligned_cols=223 Identities=11% Similarity=0.008 Sum_probs=120.8
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHH-------HHHHHhh
Q 005454 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV-------SSALIDM 367 (696)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~li~~ 367 (696)
...+.+.|++++|++.++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.... +..+++.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555554432 11223344444445555555555555555555443222111 1111111
Q ss_pred HHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhcCCcHH
Q 005454 368 YCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF---VSVLSACLHADLFE 441 (696)
Q Consensus 368 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~ 441 (696)
-......+.....++..+. .++..+..+...+...|+.++|.+++++..+. .||.... ..........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChH
Confidence 1122233444555555553 47778888888888889999999998888884 4554321 11111223346667
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005454 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS---LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518 (696)
Q Consensus 442 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (696)
.+.+.++...+...-.|+.....++..++.+.|++++|.+.|+. ....|+...+..+...+.+.|+.++|.+++++.
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777776665322222224455666667777777777777762 333566666666666666777777776666665
Q ss_pred Hh
Q 005454 519 FE 520 (696)
Q Consensus 519 ~~ 520 (696)
+.
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 43
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=126.16 Aligned_cols=268 Identities=13% Similarity=0.142 Sum_probs=198.2
Q ss_pred CChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCC--CCchHHHHHHHhhHHhcCChHHHHH
Q 005454 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV--DDDLLVSSALIDMYCKCGVTDDAWT 379 (696)
Q Consensus 302 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~ 379 (696)
-+..+|+.+|...... +.-+......+..+|-..++.++++.+|+.+.+... -.+..+|++.+--+-+.=.+..--+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567888888884432 444445566777888888888889888888877543 2356677766543332222211112
Q ss_pred HHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC
Q 005454 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP-DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458 (696)
Q Consensus 380 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 458 (696)
-+-.+.+..+.+|-++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|.... ..
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 22223345678999999999999999999999999988 667 46788887777788888999999997665 35
Q ss_pred ChHHHHH---HHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 005454 459 SLDHYAC---MINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533 (696)
Q Consensus 459 ~~~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (696)
+..+|++ +.-.|.+.++++.|+-.|++. .+.| +.++...+...+.+.|+.++|.+++++++.++|.|+..-...+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 6666665 456788999999999998774 4556 4556777778888899999999999999999999999999999
Q ss_pred HHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcC
Q 005454 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603 (696)
Q Consensus 534 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g 603 (696)
.++...+++++|+..++++++- -|+..-++..+..+.++|...-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~--------------------------vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL--------------------------VPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh--------------------------CcchHHHHHHHHHHHHHHccch
Confidence 9999999999999999998762 2444456667777777775543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-08 Score=100.05 Aligned_cols=455 Identities=11% Similarity=0.064 Sum_probs=322.8
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHH
Q 005454 89 DIISWNALLSAHARSGSVQDLRALFDKMPI---RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY-THVSALN 164 (696)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~ 164 (696)
+...|-.-...=-..+++..|+.+|+.... ++...|---+..-.++.....|..++++.... -|-+. .|---+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 444555555555567888899999998874 57778888889999999999999999998864 34332 2223333
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCCchHHH
Q 005454 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN--RNLVSWNLMISGYLKNGQPKKCI 242 (696)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~ 242 (696)
.=-..|++..|+++|+.-.. ..|+...|++.|+.=.+...++.|+.++++..- |++.+|--....=.++|+...|.
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 33467899999999998876 579999999999999999999999999999764 99999999999889999999999
Q ss_pred HHHHHHHHc-C-CCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc----CC-ChhHHHHHHHHHHhcCChhHHHHH-----
Q 005454 243 DLFQEMQLL-G-LNPDEVTVSNILGACFQTGRIDDAGRLFHVIK----EK-DNVCWTTMIVGYTQNGKEEDALIL----- 310 (696)
Q Consensus 243 ~l~~~m~~~-g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~----- 310 (696)
.+|....+. | -..+...++++..--.++..++.|.-+|.-.. .. ....|..+..-=-+-|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999887764 1 01122334444444456777888888876443 22 233444444444445554443332
Q ss_pred ---HHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCch-HHHHHHHh--------hHHhcCChHHHH
Q 005454 311 ---FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL-LVSSALID--------MYCKCGVTDDAW 378 (696)
Q Consensus 311 ---~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~--------~y~~~g~~~~A~ 378 (696)
|+.+... -+-|-.+|--.++.-...|+.+...++++.++..-++... ..+.-.|. .-....+.+.+.
T Consensus 308 k~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2333332 3456667777777778889999999999999875443221 11211111 113467888888
Q ss_pred HHHhcCC---CCCchHHHHHHH----HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhH
Q 005454 379 TVFNMMP---TRNVVSWNSMIN----GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451 (696)
Q Consensus 379 ~~~~~~~---~~~~~~~~~li~----~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 451 (696)
++|+... +....|+..+-- --.++.+...|.+++...+. .-|-..+|...|..-.+.+.++....+++...
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8887654 334445444433 33467888999999887764 68888999999988889999999999999987
Q ss_pred HhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 452 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
. --+-+..+|.....+=...|+.+.|..+|+-...+|. ...|.+.+.--...|.++.|..+++++++..+...
T Consensus 465 e--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k- 541 (677)
T KOG1915|consen 465 E--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK- 541 (677)
T ss_pred h--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-
Confidence 5 2233457787778877889999999999987766653 34677777777788999999999999999887544
Q ss_pred hHHHHHHHHh-----hcC-----------ChhHHHHHHHHhh
Q 005454 528 PYIMLSNMYA-----ACG-----------RWEDVASIRSSMK 553 (696)
Q Consensus 528 ~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 553 (696)
.+...+.--. +.| ....|.++|++..
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 6666666544 334 4567777777654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-10 Score=111.96 Aligned_cols=262 Identities=12% Similarity=0.043 Sum_probs=207.7
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHh
Q 005454 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366 (696)
Q Consensus 287 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 366 (696)
++.....-..-+...+++.+.++++....+. .++....+..-|.++...|+...-..+-..+++.-+ ..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHHH
Confidence 4444555566677889999999999998875 455555566666677788887777777667776544 46778888888
Q ss_pred hHHhcCChHHHHHHHhcCCCCC---chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHH
Q 005454 367 MYCKCGVTDDAWTVFNMMPTRN---VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443 (696)
Q Consensus 367 ~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 443 (696)
.|.-.|+.++|++.|.+...-| ...|-....+|+-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 8888999999999999876443 348999999999999999999999887762 122233344455568889999999
Q ss_pred HHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHHhcCChHHHHH
Q 005454 444 QNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKSLPH--------KP-NSLIWSTLLSVCAMKGDIKHGEM 513 (696)
Q Consensus 444 ~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~p-~~~~~~~ll~~~~~~g~~~~a~~ 513 (696)
.++|.+.. ++.|+ +..++-+.-+....+.+.+|..+|+.... ++ -..+|+.|..+|++.+.+++|..
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999886 55554 56777777777888999999999876421 12 34578999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 514 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+++++.+.|.++.+|..++-+|...|+++.|...|.+..-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.8e-10 Score=116.37 Aligned_cols=279 Identities=17% Similarity=0.102 Sum_probs=175.7
Q ss_pred HhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHH
Q 005454 132 ANKGFSREALQVFSRMQKDRFEPTDY-THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210 (696)
Q Consensus 132 ~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 210 (696)
...|+++.|.+.+.+..+. .|+.. .+.....+..+.|+.+.+.+++....+....+...+.-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4578899999888877664 45433 33444566677889999999998887654333334455567888889999999
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHH-------HhcCCHHHHHHHH
Q 005454 211 RWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------FQTGRIDDAGRLF 280 (696)
Q Consensus 211 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-------~~~g~~~~A~~~~ 280 (696)
...++.+.+ .+...+..+...+.+.|++++|.+++..+.+.++.+.......-..++ ......+.....+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999988876 355678888999999999999999999999887543332211111111 2222344555566
Q ss_pred HhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchH-HHHHHH--HhhcCchhHHHHHHHHHHhCC
Q 005454 281 HVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS-SVVSSC--AKLASLYHGQVVHGKAVVLGV 354 (696)
Q Consensus 281 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~--~~~~~~~~a~~~~~~~~~~~~ 354 (696)
...+. .++..+..+...+...|+.++|.+++++..+. .||..... .++..+ ...++.+.+.+.++...+..+
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 66653 47788888999999999999999999999874 34443210 122221 223455555555555554432
Q ss_pred CCch--HHHHHHHhhHHhcCChHHHHHHHhc--C--CCCCchHHHHHHHHHHHcCChHHHHHHHHHH
Q 005454 355 DDDL--LVSSALIDMYCKCGVTDDAWTVFNM--M--PTRNVVSWNSMINGYAQNGQDLEALALYDKL 415 (696)
Q Consensus 355 ~~~~--~~~~~li~~y~~~g~~~~A~~~~~~--~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 415 (696)
. |+ ....++...+.+.|++++|.+.|+. . ..|+...+..+...+.+.|+.++|.++|++.
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 23 4444555555555555555555552 2 1344444555555555555555555555543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.7e-11 Score=122.14 Aligned_cols=274 Identities=15% Similarity=0.083 Sum_probs=187.7
Q ss_pred HHHHHHHHHhccCC--C-hhHHHHHHHHHHhcCChhHHHHHHHHhccCC--CCCCccchHHHHHHHHhhcCchhHHHHHH
Q 005454 273 IDDAGRLFHVIKEK--D-NVCWTTMIVGYTQNGKEEDALILFNEMLSED--VRPDKFSISSVVSSCAKLASLYHGQVVHG 347 (696)
Q Consensus 273 ~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 347 (696)
..+|...|..++.. | ......+..+|...+++++|.++|+.+.+.. ..-+..+|++.+-.+-+. .+...+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHH
Confidence 45555555554321 2 2233344556666666666666666665421 111334555555433221 1122222
Q ss_pred -HHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCC---chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005454 348 -KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN---VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423 (696)
Q Consensus 348 -~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (696)
.+++.. +..+.+|.++.++|.-+++.+.|++.|++..+.| ..+|+-+..-+.....++.|...|+..+. +.|+
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 222222 3467888888889988899999999988877543 45777777777888888888888888866 4454
Q ss_pred H-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 005454 424 S-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLL 499 (696)
Q Consensus 424 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll 499 (696)
. ..|..+...|.+.++++.|.-.|+.+. .+.|. .....++...+-+.|+.++|++++++.- ..| |+..--.-+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 4 467777778888999999998888876 45565 4566677788888999999999998742 233 444444445
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
..+...+++++|...+|++.++-|++...|.+++.+|.+.|+.+.|+.-|.-+.+-.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 566778899999999999999999999999999999999999999998888776644
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-07 Score=93.01 Aligned_cols=467 Identities=13% Similarity=0.146 Sum_probs=262.9
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCCCCcchHHHHHHHHHccCChhHHHHHHhcCCCC----------CcchHHHHHH
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----------DSVSYNTAIA 129 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----------~~~~~~~li~ 129 (696)
.+|.-.+......|-++-+.+++++..+-++..-+--|..+++.+++++|.+.+...... +-..|+.+-.
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcd 218 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCD 218 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHH
Confidence 455555666666666667777777766666666666777777777777777766655321 2223444444
Q ss_pred HHHhCCChhHHH---HHHHHhHHCCCCCCcc--hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc-
Q 005454 130 GFANKGFSREAL---QVFSRMQKDRFEPTDY--THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK- 203 (696)
Q Consensus 130 ~~~~~g~~~~A~---~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~- 203 (696)
..+++.+.-..+ .+++.+.. .-||.. .|.+|..-|.+.|.++.|..+++..+..-. .+.-++.+-+.|+.
T Consensus 219 lis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 219 LISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHH
Confidence 444332222211 12222221 123322 344455555555555555555554443311 11111222222211
Q ss_pred ---------------CC------CHHHHHHHHHhcCC---------------CChhHHHHHHHHHHhCCCchHHHHHHHH
Q 005454 204 ---------------GG------EIDKARWLFDRMNN---------------RNLVSWNLMISGYLKNGQPKKCIDLFQE 247 (696)
Q Consensus 204 ---------------~g------~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~ 247 (696)
.| +++-...-|+.+.. .++..|..-+.. ..|+..+-...|.+
T Consensus 295 EE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyte 372 (835)
T KOG2047|consen 295 EESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTE 372 (835)
T ss_pred HHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHH
Confidence 11 12223333333332 233445444433 35677788888888
Q ss_pred HHHcCCCCC------cchHHHHHHHHHhcCCHHHHHHHHHhccCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHh
Q 005454 248 MQLLGLNPD------EVTVSNILGACFQTGRIDDAGRLFHVIKEKDN-------VCWTTMIVGYTQNGKEEDALILFNEM 314 (696)
Q Consensus 248 m~~~g~~p~------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m 314 (696)
.... +.|. ...|..+.+.|-..|+++.|+.+|++..+-+- .+|-.-...=.+..+++.|+++.++.
T Consensus 373 Av~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 373 AVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 7764 3332 23477788889999999999999998875432 24555566667788899999998887
Q ss_pred ccCCCCCC-----------------ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHH
Q 005454 315 LSEDVRPD-----------------KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377 (696)
Q Consensus 315 ~~~g~~p~-----------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 377 (696)
....-.|. ...|+..+..--..|-++..+.+++.+++..+.....+. .....+....-++++
T Consensus 452 ~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~-NyAmfLEeh~yfees 530 (835)
T KOG2047|consen 452 THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIII-NYAMFLEEHKYFEES 530 (835)
T ss_pred hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhhHHHHHH
Confidence 64211111 112344444445567888888999999988775333332 233344556667889
Q ss_pred HHHHhcCC----CCCch-HHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hcCCcHHHHHHHH
Q 005454 378 WTVFNMMP----TRNVV-SWNSMINGYAQN---GQDLEALALYDKLLQENLKPDSFTFVSVLSAC--LHADLFERGQNHF 447 (696)
Q Consensus 378 ~~~~~~~~----~~~~~-~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~ 447 (696)
.++|++-. -|++. .|++.+.-+.+. -..+.|..+|++.++ |.+|...-+.-|+-+- ..-|....|+.++
T Consensus 531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIY 609 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99998765 25554 788877766642 467899999999999 6777765444444432 2458888999999
Q ss_pred HHhHHhhCCCCC--hHHHHHHHHH----Hh---ccCCHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHH
Q 005454 448 DSISAVHGITPS--LDHYACMINL----LG---RSSDVDKAVDLIKSLPHKPNSLI---WSTLLSVCAMKGDIKHGEMAA 515 (696)
Q Consensus 448 ~~m~~~~~~~p~--~~~~~~li~~----~~---~~g~~~~A~~~~~~~~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~ 515 (696)
+++.. ++.+. ...|+..|.- |+ ..+-+++|++. + ||..+ ---....-.+.|.+++|..++
T Consensus 610 erat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---L---p~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 610 ERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---L---PDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---C---ChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 98765 55554 3456655532 22 11223333332 2 23221 122223335667777777777
Q ss_pred HHHHhcCCC--CCchHHHHHHHHhhcCChh
Q 005454 516 RHLFELEPI--NAGPYIMLSNMYAACGRWE 543 (696)
Q Consensus 516 ~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 543 (696)
...-++-|+ +...|...-+--.+.|+-+
T Consensus 682 a~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 682 AHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 766665533 2334555555566666633
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-12 Score=125.93 Aligned_cols=252 Identities=17% Similarity=0.113 Sum_probs=77.6
Q ss_pred HHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHH-HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCC
Q 005454 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN-ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206 (696)
Q Consensus 128 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 206 (696)
...+.+.|++++|++++.+......+|+...|-.++. .+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4556666777777777654443322344444433332 334456666666666666665433 44555555555 56677
Q ss_pred HHHHHHHHHhcCC--CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCCHHHHHHHHHhc
Q 005454 207 IDKARWLFDRMNN--RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283 (696)
Q Consensus 207 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 283 (696)
+++|.+++...-+ ++...+..++..+.+.++++++.++++...... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777766655433 445556666666777777777777777765432 2344455555556666666666666666655
Q ss_pred cC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHH
Q 005454 284 KE--K-DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360 (696)
Q Consensus 284 ~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 360 (696)
.+ | |....+.++..+...|+.+++.+++....... +.|...+..+..++...|+.+.|...+....+.... |+.+
T Consensus 173 l~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~ 250 (280)
T PF13429_consen 173 LELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLW 250 (280)
T ss_dssp HHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-cccc
Confidence 42 2 45556666666666666666666666655432 344445555566666666666666666666554432 5555
Q ss_pred HHHHHhhHHhcCChHHHHHHHhc
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNM 383 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~ 383 (696)
...+.+.+...|+.++|..+.+.
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccc
Confidence 55566666666666666655543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-09 Score=111.83 Aligned_cols=529 Identities=10% Similarity=0.025 Sum_probs=311.4
Q ss_pred hhhhHHH--HHHHHHHHcCCCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcc-cHHHHHHHHHHccCChHHH
Q 005454 2 KAKHKLR--QAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT-FLHNRLLHFYAKSGKLFYA 78 (696)
Q Consensus 2 ~~~~~~~--~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a 78 (696)
.+...+. .+|..+..+|+.|+..||.+++..++ ..|+.+.|- ++..+.....+.. .+++.++......++.+.+
T Consensus 2 qne~kf~ptnfla~~e~~gi~PnRvtyqsLiarYc--~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enp 78 (1088)
T KOG4318|consen 2 QNEVKFFPTNFLALHEISGILPNRVTYQSLIARYC--TKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENP 78 (1088)
T ss_pred CcccccCcchHHHHHHHhcCCCchhhHHHHHHHHc--ccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCC
Confidence 3444455 78889999999999999999999999 888988887 6666666666666 8999999999999998887
Q ss_pred HHHHccCCCCCcchHHHHHHHHHccCChhH---HHHHHhcCCC---------C-------------CcchHHHHHHHHHh
Q 005454 79 RDLFDKMPLRDIISWNALLSAHARSGSVQD---LRALFDKMPI---------R-------------DSVSYNTAIAGFAN 133 (696)
Q Consensus 79 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~f~~~~~---------~-------------~~~~~~~li~~~~~ 133 (696)
. +|-..+|+.|..+|.+.|++.. .++.+..+.. + ....-...+....-
T Consensus 79 k-------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~ 151 (1088)
T KOG4318|consen 79 K-------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVL 151 (1088)
T ss_pred C-------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHH
Confidence 7 7788999999999999998765 2221211110 0 01112234444555
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHH
Q 005454 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213 (696)
Q Consensus 134 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 213 (696)
.|.++.+++++..|......- ++...|+-+..... -.+++.......--.|+..++.++++.-...|+++.|..+
T Consensus 152 eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 667777777776665332110 12123444443332 2233333222221158999999999999999999999999
Q ss_pred HHhcCCCCh----hHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChh
Q 005454 214 FDRMNNRNL----VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289 (696)
Q Consensus 214 ~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 289 (696)
+.+|.+... .-|..|+-+ .+....+..+++-|.+.|+.|+..|+..-+-.+...|....+....+.-.--...
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAa 303 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAA 303 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHH
Confidence 999987432 234455544 7888889999999999999999999988887777766533332221111111122
Q ss_pred HHHHHHHHHHhcCCh-----hHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCC---CchHHH
Q 005454 290 CWTTMIVGYTQNGKE-----EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD---DDLLVS 361 (696)
Q Consensus 290 ~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~ 361 (696)
.+..+..+...+.+. .-....+.+..-.|+......|..... ....|.-+..+++-..+..-... .++..+
T Consensus 304 vrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~ 382 (1088)
T KOG4318|consen 304 VRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAF 382 (1088)
T ss_pred HHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHH
Confidence 233333331111111 112222222222333333322322222 22356666666666665442211 122333
Q ss_pred HHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHH---------------cCChHHHHHHHHHHHHC----CCCC
Q 005454 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ---------------NGQDLEALALYDKLLQE----NLKP 422 (696)
Q Consensus 362 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---------------~g~~~~A~~l~~~m~~~----g~~p 422 (696)
..++. +.|.+...+....-.-...+... .-+...++.-+..+... -..|
T Consensus 383 ~~~lr------------qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~ 450 (1088)
T KOG4318|consen 383 GALLR------------QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEP 450 (1088)
T ss_pred HHHHH------------HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhccccc
Confidence 33333 33333332221111001111111 11111111111111110 0111
Q ss_pred -------CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCC-----C
Q 005454 423 -------DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK-----P 490 (696)
Q Consensus 423 -------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----p 490 (696)
=...-+.++..|...-+..++...-+.... +-+ ...|..||+.+....++++|..+..+...+ -
T Consensus 451 ~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~L 526 (1088)
T KOG4318|consen 451 WPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHL 526 (1088)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhc
Confidence 112334455555555555555544333322 111 267899999999999999999998876532 3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEE
Q 005454 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFEL---EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWI 566 (696)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i 566 (696)
|..-+..+.....+++....+..+++.+.+. .|........+.+..+..|+.+...++.+-+...|+.- .|.-|.
T Consensus 527 d~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 527 DLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWM 604 (1088)
T ss_pred ccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccceE
Confidence 4455677788888888888888888877652 23334556778888899999999999999998888865 355553
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-09 Score=102.74 Aligned_cols=256 Identities=11% Similarity=0.073 Sum_probs=200.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCC--CchHHHHHHHhhHHhc
Q 005454 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD--DDLLVSSALIDMYCKC 371 (696)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y~~~ 371 (696)
+..++....+.++++.-.......|++.+...-+....+.-...+++.|+.+|+.+.+..+- .|..+|+.++-.--.+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34456666678888888888887777655555555555566778999999999999887542 3667777666433333
Q ss_pred CChH-HHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHH
Q 005454 372 GVTD-DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQNHFDS 449 (696)
Q Consensus 372 g~~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~ 449 (696)
.++. -|..++ .+.+--+.|.-.+.+-|.-.++.++|...|++.++ +.|.. ..|+.+..-|....+...|++-+..
T Consensus 313 skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2332 233333 23333445666677888899999999999999998 45664 5677777889999999999999999
Q ss_pred hHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 450 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
+.+ --+.|-..|-.|..+|.-.+...-|+-+|++... +| |...|.+|...|.+.++.++|++.|.+++..+..+..
T Consensus 390 Avd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 390 AVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 985 2345678899999999999999999999988643 55 6779999999999999999999999999999988889
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 528 PYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 528 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+|..|+++|-+.++.++|...+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999987765
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-09 Score=102.23 Aligned_cols=278 Identities=14% Similarity=0.096 Sum_probs=208.3
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHH
Q 005454 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213 (696)
Q Consensus 134 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 213 (696)
.|++.+|+.+..+-.+.+-.| ...|.....+.-+.||.+.+-+++..+.+..-+++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588999999988877765443 3456666677778899999999999988875577788888888888999999998877
Q ss_pred HHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc-------chHHHHHHHHHhcCCHHHHHHHHHhc
Q 005454 214 FDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE-------VTVSNILGACFQTGRIDDAGRLFHVI 283 (696)
Q Consensus 214 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~A~~~~~~~ 283 (696)
.++... .+.........+|.+.|++.+...++.+|.+.|+-.|+ .+|..+++-....+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 766543 67778889999999999999999999999998865554 36777777777777777766777777
Q ss_pred cC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHH
Q 005454 284 KE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360 (696)
Q Consensus 284 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 360 (696)
+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+-.+.+.++.+.-++..+...+.... ++..
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L 330 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLL 330 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-ChhH
Confidence 63 3566677788888999999999999999888877776 22233455566666666666665554332 4467
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCC--CCCchHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
+.+|...|.+.+.|.+|...|+... .++..+|+-+..++.+.|+..+|.+.+++...
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777777777777777777777554 46677777777777777777777777776554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-08 Score=99.80 Aligned_cols=494 Identities=11% Similarity=0.060 Sum_probs=299.0
Q ss_pred hHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHcc--CCCCCcchHHHHHHHH
Q 005454 23 EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK--MPLRDIISWNALLSAH 100 (696)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~li~~~ 100 (696)
..-+..+++-+. .......|+.+-.++...+.+|...| -+.+++.-.|+...|..+... +...|..+.......+
T Consensus 16 ~~~~~~~~r~~l--~q~~y~~a~f~adkV~~l~~dp~d~~-~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 16 LEKYRRLVRDAL--MQHRYKTALFWADKVAGLTNDPADIY-WLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCL 92 (611)
T ss_pred HHHHHHHHHHHH--HHHhhhHHHHHHHHHHhccCChHHHH-HHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 344555665444 44556666666666666665554333 356777777777777666544 3456777777777888
Q ss_pred HccCChhHHHHHHhcCCC-CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHH
Q 005454 101 ARSGSVQDLRALFDKMPI-RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179 (696)
Q Consensus 101 ~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 179 (696)
.+..+++.|..++..-+. .+..+|..-=. ...-..+.+. ++.. +.-....+..--..+....+.++|+..+
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ar~~Y 164 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEARDKY 164 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHHHHHH
Confidence 888888888888874321 01111100000 0000000000 0000 0000011111112233445566666666
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHcC-CCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 005454 180 GKIVVGNLGGNVFVRNALTDMYAKG-GEIDKARWLFDRMNN-----RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253 (696)
Q Consensus 180 ~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 253 (696)
.+.+... +.-+.++...-... -...+-..+|+...- .++...-.+.....-...-++....-.+-.-.|.
T Consensus 165 ~~Al~~D----~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l 240 (611)
T KOG1173|consen 165 KEALLAD----AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGL 240 (611)
T ss_pred HHHHhcc----hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhh
Confidence 6665443 22222222111110 001112222222110 1111111111111000000111111111111233
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChh---HHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHH
Q 005454 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV---CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330 (696)
Q Consensus 254 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 330 (696)
.-+......-..-+...+++.+..++++.+.+.|+. .+..-|..+...|+..+-..+=.+|.+. .+-...+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 445555555666678889999999999988865544 4556677888899988888888888875 555678899998
Q ss_pred HHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHH
Q 005454 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLE 407 (696)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 407 (696)
--|...|...+|++.+.+....... -...|-++...|+-.|.-|+|...+....+ ..-..+--+..-|.+.+..+-
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 8888999999999999998776543 345788889999999999999887765432 121222234556788899999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhh-CCC----CChHHHHHHHHHHhccCCHHHHHH
Q 005454 408 ALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVH-GIT----PSLDHYACMINLLGRSSDVDKAVD 481 (696)
Q Consensus 408 A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~----p~~~~~~~li~~~~~~g~~~~A~~ 481 (696)
|.+.|.+... +-|+ +...+-+.-...+.+.+.+|..+|+.....- .+. -...+++.|..+|.+.+++++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999887 5555 4555555555566889999999999876310 111 134568899999999999999999
Q ss_pred HHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 005454 482 LIKSLP-H-KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 482 ~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
.+++.. . +.+..++.++.-.+...|+++.|...|.+++.+.|++..+-..|..+
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 998743 2 45778999999999999999999999999999999987766666544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.6e-10 Score=107.42 Aligned_cols=197 Identities=12% Similarity=0.045 Sum_probs=161.1
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 433 (696)
....+..+...|...|++++|...|+... +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 35566777888888999999998888665 2345678888889999999999999999988853 3445677778888
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a 511 (696)
+...|++++|...++.+.+..........+..+...+...|++++|.+.+++.. ..| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 889999999999999987632222345667778889999999999999998743 234 456788889999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
...++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888888999999999999999999887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-07 Score=100.31 Aligned_cols=504 Identities=12% Similarity=0.122 Sum_probs=290.4
Q ss_pred HHHHcCCCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCC-----
Q 005454 13 TLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL----- 87 (696)
Q Consensus 13 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----- 87 (696)
-..+-|..|| |..+|+...+ -+++.+.+..+.+....++ ..-.+.+...+...+....+...+-.+.+
T Consensus 503 Y~kKvGyTPd---ymflLq~l~r---~sPD~~~qFa~~l~Q~~~~-~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd 575 (1666)
T KOG0985|consen 503 YAKKVGYTPD---YMFLLQQLKR---SSPDQALQFAMMLVQDEEP-LADIEQIVDLFMELNLIQQCTSFLLDALKLNSPD 575 (1666)
T ss_pred HHHHcCCCcc---HHHHHHHHHc---cChhHHHHHHHHhhccCCC-cccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChh
Confidence 3456688888 5556666652 3466666666666654432 22234444444433333333322222111
Q ss_pred ----------------C------------CcchHHHHHHHHHccCChhHHHHHHhcCCCC-CcchHHHH-----HHHHHh
Q 005454 88 ----------------R------------DIISWNALLSAHARSGSVQDLRALFDKMPIR-DSVSYNTA-----IAGFAN 133 (696)
Q Consensus 88 ----------------~------------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~l-----i~~~~~ 133 (696)
| ...-|..+.+.|.+.|-...|++.|..+..- -++..+.+ +-.|.-
T Consensus 576 ~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg 655 (1666)
T KOG0985|consen 576 EGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFG 655 (1666)
T ss_pred hhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHH
Confidence 1 1223667888999999999999988877531 11112222 234555
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHc-----------CCCCchhHHHHHHHHHH
Q 005454 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG-----------NLGGNVFVRNALTDMYA 202 (696)
Q Consensus 134 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~ 202 (696)
.-.++.+++.++.|...+++.|..+...+..-|...-..+...++|+..... ++.-|+.+.-..|.+.+
T Consensus 656 ~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~ 735 (1666)
T KOG0985|consen 656 SLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAAC 735 (1666)
T ss_pred hcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHH
Confidence 5678889999999998888877766655555554444444444444443321 34567777778899999
Q ss_pred cCCCHHHHHHHHHhcCC-------------------------------CChhHH------HHHHHHHHh-----------
Q 005454 203 KGGEIDKARWLFDRMNN-------------------------------RNLVSW------NLMISGYLK----------- 234 (696)
Q Consensus 203 ~~g~~~~A~~~~~~~~~-------------------------------~~~~~~------~~li~~~~~----------- 234 (696)
+.|++.+.+++-++-.- +|.+.| .-.|..|.+
T Consensus 736 kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~Vv 815 (1666)
T KOG0985|consen 736 KTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVV 815 (1666)
T ss_pred hhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhh
Confidence 99999888877655430 011110 012222222
Q ss_pred -----------------------------------CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc---------
Q 005454 235 -----------------------------------NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--------- 270 (696)
Q Consensus 235 -----------------------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--------- 270 (696)
.++..--+..++.....|. .|..|++++...|..+
T Consensus 816 G~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLk 894 (1666)
T KOG0985|consen 816 GALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLK 894 (1666)
T ss_pred hhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcc
Confidence 2222223333444455553 3667777776662211
Q ss_pred -------------------------------------------------------CCHHHHHHHH-----------Hhcc
Q 005454 271 -------------------------------------------------------GRIDDAGRLF-----------HVIK 284 (696)
Q Consensus 271 -------------------------------------------------------g~~~~A~~~~-----------~~~~ 284 (696)
.+.+--.+++ ++..
T Consensus 895 eN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv 974 (1666)
T KOG0985|consen 895 ENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVV 974 (1666)
T ss_pred cCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHH
Confidence 1111111111 1100
Q ss_pred ------CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccc----hHHHHHHHHhhcCchhHHHHHHHHHHh--
Q 005454 285 ------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS----ISSVVSSCAKLASLYHGQVVHGKAVVL-- 352 (696)
Q Consensus 285 ------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 352 (696)
..|+..-+..+.++...+-+.+-+++++++.-. |+.+. +..++-.-+-..+.....+...++-..
T Consensus 975 ~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa 1051 (1666)
T KOG0985|consen 975 QTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA 1051 (1666)
T ss_pred HhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc
Confidence 113444455566677777777777777776532 22211 111111111111111111111111110
Q ss_pred ---------------------CCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHH
Q 005454 353 ---------------------GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411 (696)
Q Consensus 353 ---------------------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 411 (696)
.+..+....+.|++ ..+.++.|.+.-++..+ +..|..+..+-.+.|...+|++-
T Consensus 1052 ~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1052 PDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHH
Confidence 11112222222221 23344444444444333 45799999999999999999988
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCC
Q 005454 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491 (696)
Q Consensus 412 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 491 (696)
|-+. -|...|..++..+.+.|.+++-.+++....++ .-+|.++ +.|+-+|++.+++.+-++++. -||
T Consensus 1127 yika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN 1193 (1666)
T KOG0985|consen 1127 YIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPN 1193 (1666)
T ss_pred HHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCC
Confidence 7542 35678999999999999999999999877664 6666655 478999999999999777663 477
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 492 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
..-...+..-|...|.++.|.-++. +.+.|..|+..+...|.+..|...-++..
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7778888899999999998887776 34567888888888888888776554443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-08 Score=96.07 Aligned_cols=268 Identities=13% Similarity=0.109 Sum_probs=155.9
Q ss_pred hCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHcCCCHH
Q 005454 133 NKGFSREALQVFSRMQKDRFEPT-DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN---VFVRNALTDMYAKGGEID 208 (696)
Q Consensus 133 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~ 208 (696)
-++++++|.++|-+|.+. .|. ..+-.+|-+.+.+.|..+.|..+|+.+.++.--+. ....-.|..-|.+.|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 346888999999999874 232 23445666778888889999999888876531111 223445677788888888
Q ss_pred HHHHHHHhcCCCC---hhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC
Q 005454 209 KARWLFDRMNNRN---LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285 (696)
Q Consensus 209 ~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 285 (696)
.|+.+|..+.+.+ ..+...|+..|-+..++++|++.-+++...+-++..+-..
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA------------------------ 180 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA------------------------ 180 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH------------------------
Confidence 8888888887633 2356678888888888888888888777765443322111
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccch-HHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHH
Q 005454 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI-SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364 (696)
Q Consensus 286 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 364 (696)
..|--+...+....+.+.|..++.+..+.+ |+.+-- ..+.+.....|+++.|.+.++.+.+.+..--..+...|
T Consensus 181 ---qfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 181 ---QFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ---HHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 123335555556667777777777776542 322222 22333445556666666666666555544444455555
Q ss_pred HhhHHhcCChHHHHHHHhcCCC--CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005454 365 IDMYCKCGVTDDAWTVFNMMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433 (696)
Q Consensus 365 i~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 433 (696)
..+|.+.|+.++....+.++.+ +++..-+.+...-....-.+.|...+.+-+. -+|+...|..++..
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~ 324 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHh
Confidence 5555555555555555544431 2333333333333333333344443333333 25555555555554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.9e-09 Score=100.75 Aligned_cols=277 Identities=16% Similarity=0.092 Sum_probs=150.7
Q ss_pred CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCC----ChhHHHHHHHHHHhcCChhHHHHH
Q 005454 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK----DNVCWTTMIVGYTQNGKEEDALIL 310 (696)
Q Consensus 235 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~ 310 (696)
.|++.+|+++..+-.+.+-.| ...|..-..+--..|+.+.+-.++.+..++ +....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888877665333 223334444455677777777777766543 334455666677777777777777
Q ss_pred HHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchH-------HHHHHHhhHHhcCChHHHHHHHhc
Q 005454 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL-------VSSALIDMYCKCGVTDDAWTVFNM 383 (696)
Q Consensus 311 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~y~~~g~~~~A~~~~~~ 383 (696)
+.++.+.+.. +.........+|...|++.....+...+.+.+.-.+.. +++.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777764322 33445566667777777777777777777766544432 233333333333333333334444
Q ss_pred CC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh
Q 005454 384 MP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460 (696)
Q Consensus 384 ~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 460 (696)
.+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|+-. .+-.+.+.++...-++..+...+
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~-------- 322 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLK-------- 322 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHH--------
Confidence 44 1233344444444555555555555555555544444411 11123333433333333333333
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
..+..| ..+.+|...|.+++.+.+|...++.+++..| +...|..++.++.+.|
T Consensus 323 ------------------------~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g 375 (400)
T COG3071 323 ------------------------QHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLG 375 (400)
T ss_pred ------------------------hCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcC
Confidence 333333 4555555556666666666666665555555 3455566666666666
Q ss_pred ChhHHHHHHHHh
Q 005454 541 RWEDVASIRSSM 552 (696)
Q Consensus 541 ~~~~A~~~~~~m 552 (696)
+..+|..++++.
T Consensus 376 ~~~~A~~~r~e~ 387 (400)
T COG3071 376 EPEEAEQVRREA 387 (400)
T ss_pred ChHHHHHHHHHH
Confidence 666666655544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.3e-09 Score=96.34 Aligned_cols=244 Identities=14% Similarity=0.131 Sum_probs=131.0
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCc----hHHHHHHHhhHHhcC
Q 005454 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD----LLVSSALIDMYCKCG 372 (696)
Q Consensus 297 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g 372 (696)
-|...|-+|.|..+|..+.+.|. .-......++..|-...+++.|..+-..+.+.+..+. ...|.-|...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 34444444444444444443211 1112233344444444444444444444444333221 123334444555556
Q ss_pred ChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 005454 373 VTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449 (696)
Q Consensus 373 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 449 (696)
+.+.|..++.+..+ ..+..--.+...+...|++++|++.++...+.+..--..+...|..+|.+.|+.+++...+.+
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66777777766552 233344445666777788888888888877754333345666677777788888888877777
Q ss_pred hHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch
Q 005454 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI-KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528 (696)
Q Consensus 450 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 528 (696)
+.+. .+....-..+.+......-.+.|..++ +.+..+|+...+..|+..-...
T Consensus 275 ~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d----------------------- 328 (389)
T COG2956 275 AMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD----------------------- 328 (389)
T ss_pred HHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc-----------------------
Confidence 7653 234444444444444444444444443 3455566666555555432111
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEE
Q 005454 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575 (696)
Q Consensus 529 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f 575 (696)
+.-|++.+...+++.|....++..|.+..-..+-..|.|
T Consensus 329 --------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 329 --------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred --------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 123456777777888887777777766655555555554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.9e-07 Score=91.87 Aligned_cols=490 Identities=12% Similarity=0.129 Sum_probs=262.2
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCC-----CCcchHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhC
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPL-----RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK 134 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 134 (696)
..+-..+....+.|++...+..|++... .....|...+......|-++-+.+++++..+-+...-+.-|..++..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4555555666677777777777776543 24456777777777777777777777777665555666777777777
Q ss_pred CChhHHHHHHHHhHHCC------CCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCC--Cc--hhHHHHHHHHHHcC
Q 005454 135 GFSREALQVFSRMQKDR------FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG--GN--VFVRNALTDMYAKG 204 (696)
Q Consensus 135 g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~--~~~~~~li~~~~~~ 204 (696)
+++++|.+.+....... .+.+...|..+-...++..+.-....+ +.+++.|+. +| ...|++|.+-|.+.
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 77777777776654321 233334455444444444332222211 222223322 22 35677888888888
Q ss_pred CCHHHHHHHHHhcCC--CChhHHHHHHHHHHhC----------------CC------chHHHHHHHHHHHcCC-------
Q 005454 205 GEIDKARWLFDRMNN--RNLVSWNLMISGYLKN----------------GQ------PKKCIDLFQEMQLLGL------- 253 (696)
Q Consensus 205 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~----------------g~------~~~A~~l~~~m~~~g~------- 253 (696)
|.++.|..+|++..+ -.+.-|..+-.+|++- |+ ++-.+.-|+.+...+.
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 888888888876554 1222233333333321 11 1111222222222110
Q ss_pred ----CCCcchHHHHHHHHHhcCCHHHHHHHHHhccC---C------ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCC
Q 005454 254 ----NPDEVTVSNILGACFQTGRIDDAGRLFHVIKE---K------DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320 (696)
Q Consensus 254 ----~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 320 (696)
+-+..+|..-. -...|+..+-...+.+... | -...|..+...|-.+|+.+.|..+|.+..+-..+
T Consensus 342 LRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 00011111111 1112333333333333221 1 1124667777777777777777777776543211
Q ss_pred CC---ccchHHHHHHHHhhcCchhHHHHHHHHHHhC-----------CCC------chHHHHHHHhhHHhcCChHHHHHH
Q 005454 321 PD---KFSISSVVSSCAKLASLYHGQVVHGKAVVLG-----------VDD------DLLVSSALIDMYCKCGVTDDAWTV 380 (696)
Q Consensus 321 p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~li~~y~~~g~~~~A~~~ 380 (696)
-- ..+|......=.+..+++.|..+.+.+...- .++ +..+|+..++.--..|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 10 0111111222223445555655555543211 011 123444455555566667777777
Q ss_pred HhcCCCCCchHHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH---hcCCcHHHHHHHHHHhHHh
Q 005454 381 FNMMPTRNVVSWNSM---INGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVLSAC---LHADLFERGQNHFDSISAV 453 (696)
Q Consensus 381 ~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~---~~~g~~~~a~~~~~~m~~~ 453 (696)
|+++.+--+.|-..+ ..-+-.+.-++++.+.|++-+..--.|+. ..|+..+.-+ .....++.|..+|++..+
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~- 578 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD- 578 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Confidence 776654322222111 12233456677777777776664334554 3444444332 234568999999999987
Q ss_pred hCCCCChH--HHHHHHHHHhccCCHHHHHHHHHhCCCC--CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 454 HGITPSLD--HYACMINLLGRSSDVDKAVDLIKSLPHK--PN--SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 454 ~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
+.+|.-. .|-.....=-+-|....|++++++.... +. ...|+..+.--...=-+.....+++++++.-|++-.
T Consensus 579 -~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~ 657 (835)
T KOG2047|consen 579 -GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKA 657 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHH
Confidence 7776532 2322233334568888899999886543 22 236777765444333344567788999988776543
Q ss_pred h--HHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 528 P--YIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 528 ~--~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
- -...+++-.+.|..+.|..++.--.+
T Consensus 658 r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 658 REMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 3 44567888899999999999865543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-11 Score=85.07 Aligned_cols=50 Identities=36% Similarity=0.590 Sum_probs=47.3
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHc
Q 005454 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168 (696)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 168 (696)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999864
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-07 Score=91.43 Aligned_cols=293 Identities=10% Similarity=0.028 Sum_probs=208.8
Q ss_pred HHHhCCCchHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHH---HHHHHHhcCChhH
Q 005454 231 GYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT---MIVGYTQNGKEED 306 (696)
Q Consensus 231 ~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~ 306 (696)
+.+-.++...|...+-.+.... ++-|......+...+...|+.++|...|++..--|+.+... ..-.+.+.|+.+.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh
Confidence 3344566666666665555443 44556667788888888899999999998877554443332 2344567888888
Q ss_pred HHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC-
Q 005454 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP- 385 (696)
Q Consensus 307 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~- 385 (696)
...+...+... .+-+...|..-+...-...+++.|..+-++.++.... +...+-.-...+...|+.++|.-.|+...
T Consensus 285 ~~~L~~~Lf~~-~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAK-VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhh-hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 88888777643 1222333333334444567777887777777765543 34444444566778899999999998765
Q ss_pred --CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-cCCcHHHHHHHHHHhHHhhCCCCC-h
Q 005454 386 --TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL-SACL-HADLFERGQNHFDSISAVHGITPS-L 460 (696)
Q Consensus 386 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~ 460 (696)
+-+..+|..|+.+|...|.+.+|.-+-+..... ++.+..+...+. ..|. ....-++|..++++.. .+.|+ .
T Consensus 363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~ 438 (564)
T KOG1174|consen 363 LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYT 438 (564)
T ss_pred cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccH
Confidence 347789999999999999999999887776553 344455555552 3333 2334578888888765 45676 4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchH
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKS-LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
...+.+..++.+.|+.++++.++++ +...||....+.|...++..+.+++|...|..++.++|++..+.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 5677788999999999999999987 45579999999999999999999999999999999999875543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.6e-11 Score=83.70 Aligned_cols=50 Identities=32% Similarity=0.666 Sum_probs=47.3
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005454 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436 (696)
Q Consensus 387 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 436 (696)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-09 Score=110.27 Aligned_cols=230 Identities=14% Similarity=0.160 Sum_probs=168.5
Q ss_pred cchHHHHHHHHhhcCchhHHHHHHHHHHh-----CC-CCch-HHHHHHHhhHHhcCChHHHHHHHhcCCC----------
Q 005454 324 FSISSVVSSCAKLASLYHGQVVHGKAVVL-----GV-DDDL-LVSSALIDMYCKCGVTDDAWTVFNMMPT---------- 386 (696)
Q Consensus 324 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~---------- 386 (696)
.|...+...|...|+++.|...++..++. |. .|.+ ...+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555667777777777777777776654 21 1222 2233467788899999999988887652
Q ss_pred C-CchHHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-CCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHhHHhhC--C
Q 005454 387 R-NVVSWNSMINGYAQNGQDLEALALYDKLLQE-----N-LKPDSF-TFVSVLSACLHADLFERGQNHFDSISAVHG--I 456 (696)
Q Consensus 387 ~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 456 (696)
| -..+++.|...|.+.|++++|...+++..+- | ..|... -++.+...|...+.+++|..++....+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 1236788888899999999988888776541 2 223332 455666778899999999999998766543 2
Q ss_pred CCC----hHHHHHHHHHHhccCCHHHHHHHHHhCCC---------CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-
Q 005454 457 TPS----LDHYACMINLLGRSSDVDKAVDLIKSLPH---------KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFEL- 521 (696)
Q Consensus 457 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 521 (696)
.++ ..+++.|..+|...|++++|+++++++.. .+. ...++.|...|...+++++|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 233 36799999999999999999999987521 122 346788899999999999999999877553
Q ss_pred ---CCCCC---chHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 522 ---EPINA---GPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 522 ---~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
+|+.+ .+|..|+.+|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 35544 468899999999999999999988775
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-07 Score=98.23 Aligned_cols=431 Identities=13% Similarity=0.085 Sum_probs=233.6
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcch-HHHHH
Q 005454 88 RDIISWNALLSAHARSGSVQDLRALFDKMPI---RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT-HVSAL 163 (696)
Q Consensus 88 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll 163 (696)
.|...|..|.-+..++|+++.+.+.|++... .....|+.+-..|...|.-..|+.++++-....-.|+..+ +-..-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 3777888888899999999999999998753 3456799999999999999999999988765432354443 33333
Q ss_pred HHHH-ccCChHHHHHHHHHHHHcC--C--CCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCc
Q 005454 164 NACA-QLLDLRRGKQIHGKIVVGN--L--GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238 (696)
Q Consensus 164 ~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 238 (696)
..|. +.+..+++..+-..++... . ......+..+.-+|...-. +.+..+ .+....
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~s--------eR~~~h 460 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKS--------ERDALH 460 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChH--------HHHHHH
Confidence 3443 4566777776666665521 1 1112222222222221100 000000 000112
Q ss_pred hHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc----CCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 005454 239 KKCIDLFQEMQLLG-LNPDEVTVSNILGACFQTGRIDDAGRLFHVIK----EKDNVCWTTMIVGYTQNGKEEDALILFNE 313 (696)
Q Consensus 239 ~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 313 (696)
.++++.+++..+.+ -.|+..-|.+ --|+-.++++.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+.
T Consensus 461 ~kslqale~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 34444555544432 1222222221 22445555555555544433 23455566666666666666666666665
Q ss_pred hccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC-----CCC
Q 005454 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-----TRN 388 (696)
Q Consensus 314 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~ 388 (696)
.... ..-|......-+..-...++.+++......+...--. ..-. ...|+-....+.+..+. ..+
T Consensus 539 al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~--~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~ 608 (799)
T KOG4162|consen 539 ALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEA--EYGV-------QQTLDEGKLLRLKAGLHLALSQPTD 608 (799)
T ss_pred HHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHh--hhhH-------hhhhhhhhhhhhhcccccCcccccc
Confidence 5442 1111111111111112234444444433333321100 0000 00001112222222221 011
Q ss_pred ch-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC
Q 005454 389 VV-SWNSMINGYAQNGQDLEALALYDKLLQENLKPDS--------FTFVSVLSACLHADLFERGQNHFDSISAVHGITPS 459 (696)
Q Consensus 389 ~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 459 (696)
.. ++..+ .+... -+.+.+..-.. |...-+.|.. ..|......+...+..++|...+.+..+ -..-.
T Consensus 609 a~s~sr~l-s~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~ 683 (799)
T KOG4162|consen 609 AISTSRYL-SSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLS 683 (799)
T ss_pred cchhhHHH-HHHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhh
Confidence 11 11111 11111 11110000000 1111122221 1233444566777888888877776654 22334
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCH-HHHHHHHHHHHhcCChHHHHH--HHHHHHhcCCCCCchHHHHHHH
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKS-LPHKPNS-LIWSTLLSVCAMKGDIKHGEM--AARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~-~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
...|......+...|.+++|.+.|.. ....|+. .+..++...+...|+...|+. ++..+++++|.++.+|..|+.+
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV 763 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 56677777888899999999988865 4456754 488899999999999888888 9999999999999999999999
Q ss_pred HhhcCChhHHHHHHHHhhhC
Q 005454 536 YAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 536 ~~~~g~~~~A~~~~~~m~~~ 555 (696)
+.+.|+.++|...|....+-
T Consensus 764 ~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHccchHHHHHHHHHHHhh
Confidence 99999999999999877653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-07 Score=88.63 Aligned_cols=132 Identities=15% Similarity=0.095 Sum_probs=88.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHH-HHHHHHh
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA-CMINLLG 471 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~ 471 (696)
.+|.+.+.-..++++.+-.+.....- +.-|.+--..+.+|.+..|.+.+|.++|-++... .+ .+..+|. .|...|.
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHH
Confidence 34555555556666666666665553 2233333335677888888899999888776531 22 3344454 4567888
Q ss_pred ccCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch
Q 005454 472 RSSDVDKAVDLIKSLPHKPNSLIW-STLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528 (696)
Q Consensus 472 ~~g~~~~A~~~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 528 (696)
+.|+.+.|++++-++..+.+..+. ..+..-|.+.+.+--|-++|+.+-.++|. |+.
T Consensus 440 ~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEn 496 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PEN 496 (557)
T ss_pred hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-ccc
Confidence 999999999998888765555544 44456788889888888999888888873 443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-08 Score=111.62 Aligned_cols=244 Identities=14% Similarity=0.038 Sum_probs=176.8
Q ss_pred ChhHHHHHHHHhccCCCCCCcc-chHHHHHHHH---------hhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC
Q 005454 303 KEEDALILFNEMLSEDVRPDKF-SISSVVSSCA---------KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372 (696)
Q Consensus 303 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 372 (696)
..++|+++|++..+ ..|+.. .+..+..++. ..++.+.|...++.+++..+. +...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 45788888888875 345443 3333333322 223467888999998887654 6778888888999999
Q ss_pred ChHHHHHHHhcCCC--C-CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHH
Q 005454 373 VTDDAWTVFNMMPT--R-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF-TFVSVLSACLHADLFERGQNHFD 448 (696)
Q Consensus 373 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 448 (696)
++++|...|++... | +...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998663 3 456788899999999999999999999998 456543 33344445666899999999999
Q ss_pred HhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 005454 449 SISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKSLPH-KPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 449 ~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 525 (696)
++.+. ..|+ ...+..+...|...|++++|...++++.. .|+.. .++.+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88753 2343 45677788899999999999999988543 45544 4555555666666 47888888877755333
Q ss_pred CchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 526 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
+.....+..+|.-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33344477788888998888877 7776654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-06 Score=88.19 Aligned_cols=433 Identities=12% Similarity=0.119 Sum_probs=249.1
Q ss_pred HHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHH--Hcc
Q 005454 95 ALLSAHARSGSVQDLRALFDKMPI---RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC--AQL 169 (696)
Q Consensus 95 ~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~ 169 (696)
+=++.+.+.|++++|.+..+++.. .+...+..-+-+..+.+.+++|+.+.+.=.. ...+.+-+ +=.+| .+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHHc
Confidence 346677778888888887777653 2455566666677888888888855443221 01111111 12333 467
Q ss_pred CChHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHh-CCCchHHHHHHHH
Q 005454 170 LDLRRGKQIHGKIVVGNLGGN-VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK-NGQPKKCIDLFQE 247 (696)
Q Consensus 170 ~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~ 247 (696)
+..++|...+. |..++ ..+...-...+.+.|++++|..+|+.+...+...+..-+.+-+- .+-...+ ..
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~----~~ 163 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV----QL 163 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH----HH
Confidence 77777777666 33333 33555556667788888888888888766554444433332111 1100111 12
Q ss_pred HHHcCCCCCcchHHHHHH---HHHhcCCHHHHHHHHHhcc--------CCCh-----h-----HHHHHHHHHHhcCChhH
Q 005454 248 MQLLGLNPDEVTVSNILG---ACFQTGRIDDAGRLFHVIK--------EKDN-----V-----CWTTMIVGYTQNGKEED 306 (696)
Q Consensus 248 m~~~g~~p~~~t~~~ll~---~~~~~g~~~~A~~~~~~~~--------~~~~-----~-----~~~~li~~~~~~g~~~~ 306 (696)
|......| ..+|..+.+ .+...|++.+|+++++... +.|. . .---|...+...|+.++
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 33333334 345554444 3667899999999988772 2111 1 11224456777899999
Q ss_pred HHHHHHHhccCCCCCCccchHHHHH---HHHhhcCchh--HHHHHHHHH-----------HhCCCCchHHHHHHHhhHHh
Q 005454 307 ALILFNEMLSEDVRPDKFSISSVVS---SCAKLASLYH--GQVVHGKAV-----------VLGVDDDLLVSSALIDMYCK 370 (696)
Q Consensus 307 A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~~~~~~--a~~~~~~~~-----------~~~~~~~~~~~~~li~~y~~ 370 (696)
|..++...++.. .+|........+ +...-.++.. +...++... ..........-++++.+|.
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t- 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT- 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999988763 444432222211 1111111111 111111110 0000111222344555554
Q ss_pred cCChHHHHHHHhcCCCCC-chHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCcHHHHHH
Q 005454 371 CGVTDDAWTVFNMMPTRN-VVSWNSMINGYA--QNGQDLEALALYDKLLQENLKPDS--FTFVSVLSACLHADLFERGQN 445 (696)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~ 445 (696)
+..+.+.+.-...+... ...+.+++.... +.....+|.+++...-+. .|.. +.....++.....|+++.|.+
T Consensus 321 -nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 -NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 45567777777776432 233444443322 233577888888887764 4444 445555666778999999999
Q ss_pred HHH--------HhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHh--------CCCCCC-HHHHHHHHHHHHhcCCh
Q 005454 446 HFD--------SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS--------LPHKPN-SLIWSTLLSVCAMKGDI 508 (696)
Q Consensus 446 ~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~p~-~~~~~~ll~~~~~~g~~ 508 (696)
++. .+.+ +.-.+.+...++.++.+.+.-+.|..++.+ +..++. ..+|.-+..--.++|+.
T Consensus 398 il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 398 ILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 998 4432 223345667788888888876666555543 222322 22444444445678999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 509 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
++|...++++++.+|++......+.-+|++.. .+.|..+=+
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 99999999999999999999999999998764 556665543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-07 Score=92.29 Aligned_cols=409 Identities=12% Similarity=0.053 Sum_probs=252.4
Q ss_pred HHHHHHHHccCChhHHHHHHhcCC--CCC-cchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHHHcc
Q 005454 94 NALLSAHARSGSVQDLRALFDKMP--IRD-SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY-THVSALNACAQL 169 (696)
Q Consensus 94 ~~li~~~~~~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~ 169 (696)
-...+-|.+.|.+++|++.+.+.. .|| .+-|.....+|...|++++..+.-.+..+. .|+-+ .+..-.++.-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 345677888999999999999886 467 778899999999999999999888877754 56533 344444566677
Q ss_pred CChHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHH
Q 005454 170 LDLRRGKQIHGKIVV-GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248 (696)
Q Consensus 170 ~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 248 (696)
|++.++..=.....- .|+. +..+ ..+++--.+.--...+.+-|.+-..|...+ ++.|..|...-..+- ...+
T Consensus 197 g~~~eal~D~tv~ci~~~F~-n~s~-~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS-~~fi~syf~sF~~~~----~~~~ 269 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQ-NASI-EPMAERVLKKQAMKKAKEKLKENRPPVLPS-ATFIASYFGSFHADP----KPLF 269 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcc-cchh-HHHHHHHHHHHHHHHHHHhhcccCCCCCCc-HHHHHHHHhhccccc----cccc
Confidence 777776532222111 1111 1111 111111111111223333333211122211 222222322110000 0000
Q ss_pred HHcCCCCCcchHHHHHHHH----Hh-cCCHHHHHHHHHhc-------cCC---Chh------HHHHHHHHHHhcCChhHH
Q 005454 249 QLLGLNPDEVTVSNILGAC----FQ-TGRIDDAGRLFHVI-------KEK---DNV------CWTTMIVGYTQNGKEEDA 307 (696)
Q Consensus 249 ~~~g~~p~~~t~~~ll~~~----~~-~g~~~~A~~~~~~~-------~~~---~~~------~~~~li~~~~~~g~~~~A 307 (696)
..+.......+..++ .. ...+..|...+.+- ... |.. +...-..-+.-.|+.-.|
T Consensus 270 ----~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 270 ----DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred ----cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 000001111111110 00 01122222222111 111 111 111111224457889999
Q ss_pred HHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-
Q 005454 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT- 386 (696)
Q Consensus 308 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 386 (696)
...|+..+.....++. .|..+...|....+.++..+.|..+.+.+.. ++.+|..-..++.-.+++++|..-|++...
T Consensus 346 ~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999875433332 2777778899999999999999999998875 677787888888999999999999998774
Q ss_pred --CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-----
Q 005454 387 --RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----- 459 (696)
Q Consensus 387 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----- 459 (696)
.++..|-.+..+.-+.++++++...|++.++. ++--+..|+.....+...++++.|.+.|+..+. +.|+
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~ 499 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLII 499 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hcccccccc
Confidence 35566777777777889999999999999885 344467888888999999999999999998874 3444
Q ss_pred --hHH--HHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 460 --LDH--YACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 460 --~~~--~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
... .-.++ .+.-.+++.+|.+++++.. ..| ....+.+|...-.+.|+.++|.++|++...+-
T Consensus 500 v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 500 VNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred ccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 111 11121 1223489999999998754 455 35589999999999999999999999987754
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-09 Score=99.33 Aligned_cols=228 Identities=17% Similarity=0.155 Sum_probs=145.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhc
Q 005454 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371 (696)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 371 (696)
+-|..+|.+.|.+.+|.+.|+.-+.. .|-+.||..+-.+|.+...++.|..++...++.-+ .|+.........+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHH
Confidence 34556667777777777777666553 34444555566666666666666666655554322 2333333444445555
Q ss_pred CChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Q 005454 372 GVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448 (696)
Q Consensus 372 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 448 (696)
++.++|.++|+...+ .|+.+...+..+|.-.++++-|+..|+++++.| .-+...|..+.-+|...++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555554432 234444444555555666666666666666655 2344555555555555555555555555
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN--SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 449 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
+.... +. +|+ ..+|-.|.......||+..|.+.|+-++..+|++.
T Consensus 383 RAlst--------------------------------at-~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALST--------------------------------AT-QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHhh--------------------------------cc-CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 54431 11 232 34788888888889999999999999999999999
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 527 GPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
++++.|+-+-.+.|+.++|..++...++..
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999999887644
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-06 Score=92.48 Aligned_cols=255 Identities=14% Similarity=0.144 Sum_probs=154.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhH
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 368 (696)
++.-+...|-..|++++|++.+++.++. .|+ +..|..-.+.+-..|++.+|....+.+...... |..+-+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHH
Confidence 3455677788899999999999988875 455 446667777888899999999999998887764 777778888888
Q ss_pred HhcCChHHHHHHHhcCCCCCch----------HH--HHHHHHHHHcCChHHHHHHHHHHHHC--CC-------------C
Q 005454 369 CKCGVTDDAWTVFNMMPTRNVV----------SW--NSMINGYAQNGQDLEALALYDKLLQE--NL-------------K 421 (696)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~----------~~--~~li~~~~~~g~~~~A~~l~~~m~~~--g~-------------~ 421 (696)
.++|+.++|.+++....+++.. .| .....+|.+.|++..|++.|....+. .+ +
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK 352 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRK 352 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhh
Confidence 9999999999988877754421 33 33467888999999988877665542 11 1
Q ss_pred CCHHHHHHHHHHHhcCC-------cHHHHHHHHHHhHHhhCCCCCh-----------HHHHHHHHHH---hccCCHHHHH
Q 005454 422 PDSFTFVSVLSACLHAD-------LFERGQNHFDSISAVHGITPSL-----------DHYACMINLL---GRSSDVDKAV 480 (696)
Q Consensus 422 p~~~t~~~ll~a~~~~g-------~~~~a~~~~~~m~~~~~~~p~~-----------~~~~~li~~~---~~~g~~~~A~ 480 (696)
.+..+|..++.-.-+.. -...|.+++-.+.......... .--..+-.-- .+...-+++.
T Consensus 353 ~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~ 432 (517)
T PF12569_consen 353 MTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAE 432 (517)
T ss_pred ccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHH
Confidence 22233444443322111 1223344444333210000000 0000000000 0001111111
Q ss_pred HHHHh-----------C----CC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChh
Q 005454 481 DLIKS-----------L----PH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543 (696)
Q Consensus 481 ~~~~~-----------~----~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 543 (696)
..-.+ . +. .||+.- ..|+ ....=+++|.+.++-+.+..|++..+|..--.+|.+.|++-
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~L 508 (517)
T PF12569_consen 433 KAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYL 508 (517)
T ss_pred HHHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHH
Confidence 10000 0 01 122211 1121 22334688999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 005454 544 DVASIRSS 551 (696)
Q Consensus 544 ~A~~~~~~ 551 (696)
-|++.+++
T Consensus 509 LaLqaL~k 516 (517)
T PF12569_consen 509 LALQALKK 516 (517)
T ss_pred HHHHHHHh
Confidence 88887653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-06 Score=84.69 Aligned_cols=435 Identities=12% Similarity=0.048 Sum_probs=260.6
Q ss_pred CchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCCCCcchHHHHHHHH--HccCChhHHHHHHh
Q 005454 37 NDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAH--ARSGSVQDLRALFD 114 (696)
Q Consensus 37 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~f~ 114 (696)
..++++++.+....++..+|.+..++..-+-+..+.+.+++|..+.+.-....+...-.+=.+| .+.+..++|...++
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 6788999999999999998666677788888899999999999776655432221111134444 57899999999999
Q ss_pred cCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhH
Q 005454 115 KMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY-THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193 (696)
Q Consensus 115 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 193 (696)
...+-+..+-..-...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-.. ... ..+......| ..+
T Consensus 104 ~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~~~q~v~~v~-e~s 174 (652)
T KOG2376|consen 104 GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-QLLQSVPEVP-EDS 174 (652)
T ss_pred cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-HHHHhccCCC-cch
Confidence 6655565566666778899999999999999998765332111 11111111110 011 1122222222 222
Q ss_pred HHH---HHHHHHcCCCHHHHHHHHHhcC--------CCCh-----h-----HHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 005454 194 RNA---LTDMYAKGGEIDKARWLFDRMN--------NRNL-----V-----SWNLMISGYLKNGQPKKCIDLFQEMQLLG 252 (696)
Q Consensus 194 ~~~---li~~~~~~g~~~~A~~~~~~~~--------~~~~-----~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~g 252 (696)
|.. ....+...|++.+|+++++... +.|. . .--.|.-.+-..|+.++|..++...+...
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 222 3445678999999999998872 2111 1 12234456777899999999999998875
Q ss_pred CCCCcchHHHHHH---HHHhcCCHH--HHHHHHHhccCC--------------ChhH-HHHHHHHHHhcCChhHHHHHHH
Q 005454 253 LNPDEVTVSNILG---ACFQTGRID--DAGRLFHVIKEK--------------DNVC-WTTMIVGYTQNGKEEDALILFN 312 (696)
Q Consensus 253 ~~p~~~t~~~ll~---~~~~~g~~~--~A~~~~~~~~~~--------------~~~~-~~~li~~~~~~g~~~~A~~~~~ 312 (696)
.+|........+ +......+- .++..++..... ..+. -+.++..| .+.-+.+.++-.
T Consensus 255 -~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a 331 (652)
T KOG2376|consen 255 -PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSA 331 (652)
T ss_pred -CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHH
Confidence 445433222221 122211111 223333332211 1111 12223322 233444555444
Q ss_pred HhccCCCCCCccchHHHHHHHHhh--cCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHh--------
Q 005454 313 EMLSEDVRPDKFSISSVVSSCAKL--ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN-------- 382 (696)
Q Consensus 313 ~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~-------- 382 (696)
... +..|. ..+.+++..+... .....+..++....+........+.-.++......|+++.|.+++.
T Consensus 332 ~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 332 SLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred hCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 433 22333 3344455444332 2355666666666655544445666677788888999999999888
Q ss_pred cCCC--CCchHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHH----HHHhcCCcHHHHHHHHHHhHHhh
Q 005454 383 MMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQE--NLKPDSFTFVSVL----SACLHADLFERGQNHFDSISAVH 454 (696)
Q Consensus 383 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll----~a~~~~g~~~~a~~~~~~m~~~~ 454 (696)
.+.+ ..+.+-.++...|.+.++.+.|..++.+.+.- .-.+.......++ .--.+.|..++|...++.+.+
T Consensus 409 s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k-- 486 (652)
T KOG2376|consen 409 SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK-- 486 (652)
T ss_pred hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--
Confidence 4432 23334455666677777777777777766541 1122223333333 333456999999999999987
Q ss_pred CCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCC
Q 005454 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489 (696)
Q Consensus 455 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 489 (696)
-.++|..+..++|.+|.+. +.+.|..+-+.++..
T Consensus 487 ~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~ 520 (652)
T KOG2376|consen 487 FNPNDTDLLVQLVTAYARL-DPEKAESLSKKLPPL 520 (652)
T ss_pred hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCc
Confidence 4568889999999999865 578888888777543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-08 Score=109.82 Aligned_cols=210 Identities=12% Similarity=0.024 Sum_probs=163.2
Q ss_pred cCchhHHHHHHHHHHhCCCCchHHHHHHHhhHH---------hcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCC
Q 005454 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC---------KCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQ 404 (696)
Q Consensus 337 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 404 (696)
++++.|...++++++..+. +...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3467889999999887654 4556666665554 23457899999987763 466788888889999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhccCCHHHHHHH
Q 005454 405 DLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL-DHYACMINLLGRSSDVDKAVDL 482 (696)
Q Consensus 405 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 482 (696)
+++|+..|++.++. .|+ ...+..+..++...|++++|...++++.+. .|+. ..+..+...+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999994 565 567777888899999999999999999853 4543 2333345556778999999999
Q ss_pred HHhCCC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 483 IKSLPH--KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 483 ~~~~~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+++... .|+ ...+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 987532 354 4456777788889999999999999998888888888888888888888 588887877755
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-08 Score=100.41 Aligned_cols=190 Identities=18% Similarity=0.169 Sum_probs=116.7
Q ss_pred hHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 005454 358 LLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSA 433 (696)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 433 (696)
...+..+...|.+.|+.+.|...|+... ..+...|+.+...+...|++++|++.|++.++ +.|+ ..++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3445666667777777777777777554 23556777777777888888888888887776 4555 4566666667
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a 511 (696)
+...|++++|.+.|+...+. .|+..........+...++.++|.+.+++... .|+...| . ......|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~--~~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-N--IVEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-H--HHHHHccCCCHH
Confidence 77778888888877777653 34322112222233456677888777754322 2222222 1 222234444333
Q ss_pred HHHHHHHH-------hcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 512 EMAARHLF-------ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 512 ~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
..++.+. ++.|..+.+|..++.+|...|++++|...|++..+.+
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333333 4445566778888888888888888888888776644
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.9e-08 Score=94.22 Aligned_cols=196 Identities=16% Similarity=0.168 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhH
Q 005454 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368 (696)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 368 (696)
..+..+...+...|++++|.+.+++..+. .|+ +...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~----------------------------------~~~~~~~la~~~ 75 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH--DPD----------------------------------DYLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHHH
Confidence 44556666666667777777766666543 122 233334444455
Q ss_pred HhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHH
Q 005454 369 CKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP-DSFTFVSVLSACLHADLFERGQ 444 (696)
Q Consensus 369 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~ 444 (696)
...|++++|.+.|+... +.+...+..+...+...|++++|.+.|++.......| ....+..+...+...|++++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555554433 2233455555666666666666666666666532222 2234455555666677777777
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 445 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
..+....+. .+.+...+..+...+...|++++|.+.+++... +++...+..+...+...|+.+.|....+.+.+..
T Consensus 156 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 156 KYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 777766542 222345566666777777777777776665321 2344455566666677777777777776665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.6e-06 Score=85.86 Aligned_cols=453 Identities=12% Similarity=0.026 Sum_probs=276.3
Q ss_pred hHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCCC---CcchHHHHHHH
Q 005454 23 EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR---DIISWNALLSA 99 (696)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~ 99 (696)
...|..+++++- .+....++.....+++..+....+.....-.+...|+.++|.......... +.+.|..+.-.
T Consensus 8 ~~lF~~~lk~yE---~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 8 NALFRRALKCYE---TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHH---HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 345667777774 566777888877788755554455554445556778999999888877664 56788888888
Q ss_pred HHccCChhHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHH
Q 005454 100 HARSGSVQDLRALFDKMP---IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176 (696)
Q Consensus 100 ~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 176 (696)
+-...++++|++.|.... ..|...|.-+.-.-++.++++...+.-.+..+.. +.....|.....+.--.|+...|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999998765 3466778777777778888888888777776641 234456777778888889999999
Q ss_pred HHHHHHHHcCC-CCchhHHHHH------HHHHHcCCCHHHHHHHHHhcCC--CChh-HHHHHHHHHHhCCCchHHHHHHH
Q 005454 177 QIHGKIVVGNL-GGNVFVRNAL------TDMYAKGGEIDKARWLFDRMNN--RNLV-SWNLMISGYLKNGQPKKCIDLFQ 246 (696)
Q Consensus 177 ~~~~~~~~~g~-~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~ 246 (696)
.+.+...+... .|+...+.-. .....+.|.++.|.+.+..... -|-. .-.+-...+.+.+++++|..++.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 99998887652 4555444332 2345678889999988877654 1222 33455677889999999999999
Q ss_pred HHHHcCCCCCcchHHHHHH-HHHhcCCHHHHH-HHHHhccCC---ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCC
Q 005454 247 EMQLLGLNPDEVTVSNILG-ACFQTGRIDDAG-RLFHVIKEK---DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321 (696)
Q Consensus 247 ~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~A~-~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 321 (696)
.+... .||...|...+. ++.+..+.-++. .+|....+. ....-..=+.......-.+..-+.+..+.+.|+++
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 99886 477776655554 444444444444 666655421 11000000111111122233445566677777765
Q ss_pred CccchHHHHHHHHhhcCchhHHHHHHHHHH----hC----------CCCchHHHH--HHHhhHHhcCChHHHHHHHhcCC
Q 005454 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVV----LG----------VDDDLLVSS--ALIDMYCKCGVTDDAWTVFNMMP 385 (696)
Q Consensus 322 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~~--~li~~y~~~g~~~~A~~~~~~~~ 385 (696)
--..+ .+-+-.....+-.+++.-.... .| -+|....|+ .++..|-+.|+++.|...++...
T Consensus 322 vf~dl---~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 322 VFKDL---RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred hhhhh---HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 43333 2222221111111111111111 00 134444443 45667778888888888888776
Q ss_pred CCCch---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCC--CCCh
Q 005454 386 TRNVV---SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI--TPSL 460 (696)
Q Consensus 386 ~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~ 460 (696)
...+. .|..-...+...|+.++|..++++..+.. .||...=..-..-..++++.++|.++.....+. |. ..+.
T Consensus 399 dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~-~~~~~~~L 476 (700)
T KOG1156|consen 399 DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE-GFGAVNNL 476 (700)
T ss_pred ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc-ccchhhhH
Confidence 43322 34444567777888888888888877754 344332223334445677788888877776653 43 1111
Q ss_pred HHHHHH------HHHHhccCCHHHHHHHHHhC
Q 005454 461 DHYACM------INLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 461 ~~~~~l------i~~~~~~g~~~~A~~~~~~~ 486 (696)
.-..|| ..+|.|.|++.+|++-|..+
T Consensus 477 ~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 477 AEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 111222 35677777777776555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.4e-08 Score=88.54 Aligned_cols=162 Identities=14% Similarity=0.151 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDHYACMIN 468 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 468 (696)
+...+..+|.+.|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+...+ +.|+ -.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 3455777889999999999999999884 5664 6788888889999999999999988875 3444 578888888
Q ss_pred HHhccCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhH
Q 005454 469 LLGRSSDVDKAVDLIKSLPHKPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544 (696)
Q Consensus 469 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 544 (696)
-++..|++++|...|++....|+ ..+|..+..+..+.|+.+.|+..+++.++++|+.+.+...++....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 89999999999999988766554 34888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCC
Q 005454 545 VASIRSSMKSKNV 557 (696)
Q Consensus 545 A~~~~~~m~~~~~ 557 (696)
|..+++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999999877665
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-07 Score=99.03 Aligned_cols=161 Identities=13% Similarity=0.155 Sum_probs=114.3
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhcCC----------CCCch-HHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCH-
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNMMP----------TRNVV-SWNSMINGYAQNGQDLEALALYDKLLQE---NLKPDS- 424 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~----------~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~- 424 (696)
+++.|...|.+.|++++|...++... .+.+. .++.++..+...+++++|..+++...+. -+.++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 34445556677777666665554332 12222 3566777788888899888888876542 123333
Q ss_pred ---HHHHHHHHHHhcCCcHHHHHHHHHHhHHhh----C-CCCC-hHHHHHHHHHHhccCCHHHHHHHHHhC--------C
Q 005454 425 ---FTFVSVLSACLHADLFERGQNHFDSISAVH----G-ITPS-LDHYACMINLLGRSSDVDKAVDLIKSL--------P 487 (696)
Q Consensus 425 ---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--------~ 487 (696)
.++..+...+.+.|++++|.++|+++.+.. + ..+. ...++.|...|.+.+++++|.++|.+. +
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 478888889999999999999999887643 1 1222 456788888999999999888888653 1
Q ss_pred CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005454 488 HKPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFE 520 (696)
Q Consensus 488 ~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (696)
..|+.. +|..|...|...|+++.|+++.+++..
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 235544 899999999999999999999988864
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.4e-06 Score=80.15 Aligned_cols=313 Identities=12% Similarity=0.015 Sum_probs=199.1
Q ss_pred CCCcchHHHHHHHHHhc--CCHHHHHHHHHhcc-----CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccch
Q 005454 254 NPDEVTVSNILGACFQT--GRIDDAGRLFHVIK-----EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326 (696)
Q Consensus 254 ~p~~~t~~~ll~~~~~~--g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 326 (696)
+|...+....+.+++.+ ++-..|...+-.+. ..|+.....+...+...|+.++|+..|++.+. +.|+..+-
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhh
Confidence 34444445555555543 33333333332222 34666778888888888888888888888764 44543331
Q ss_pred HHH-HHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHc
Q 005454 327 SSV-VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQN 402 (696)
Q Consensus 327 ~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 402 (696)
.-+ .-.+...|+.+....+...+....-. ....|..-........+...|..+-++..+ +++..+-.-...+.+.
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc
Confidence 111 11234556666666665555443211 122222223334455667777777666553 3444555455677788
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHH-HHHh-ccCCHHHH
Q 005454 403 GQDLEALALYDKLLQENLKP-DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI-NLLG-RSSDVDKA 479 (696)
Q Consensus 403 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A 479 (696)
|+.++|.-.|+..+. +.| +...|..|+..|...|.+.+|.-.-....+ -+..+..+...+. +.+. ...--++|
T Consensus 348 ~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred cchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHH
Confidence 889999888888877 454 457888899988888888888877666654 2333444443332 2222 22334778
Q ss_pred HHHHHh-CCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 480 VDLIKS-LPHKPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 480 ~~~~~~-~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
.+++++ +..+|+-. ..+.+...|...|..+.+..++++.+...| |...++.|++++...+.+.+|...|.....
T Consensus 424 Kkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--- 499 (564)
T KOG1174|consen 424 KKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALR--- 499 (564)
T ss_pred HHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh---
Confidence 888876 45577754 667777888888999999999999988887 456788899999999999999988876654
Q ss_pred cCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHH
Q 005454 558 KKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600 (696)
Q Consensus 558 ~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~ 600 (696)
..|+.+...+-+..+.++|+
T Consensus 500 -----------------------~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 500 -----------------------QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred -----------------------cCccchHHHHHHHHHHhccC
Confidence 35666666677777777776
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8e-07 Score=91.90 Aligned_cols=220 Identities=12% Similarity=0.087 Sum_probs=115.1
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChH
Q 005454 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375 (696)
Q Consensus 296 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 375 (696)
.+......|.+|+.+++.++.+.. -.--|..+...|+..|+++.|.++|-.. ..++-.|+||.+.|+|.
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 344556666777777766665422 2233555666677777777776666542 22345566777777777
Q ss_pred HHHHHHhcCCCCC--chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHh
Q 005454 376 DAWTVFNMMPTRN--VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453 (696)
Q Consensus 376 ~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 453 (696)
+|.++-.+...|. +..|-+-..-+-.+|++.+|.++|-... .|+. .++.|-+.|..+..+++.++-..
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~- 878 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG- 878 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh-
Confidence 7777666655442 3345555555556666666666654331 3432 34445556666665555443211
Q ss_pred hCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 005454 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533 (696)
Q Consensus 454 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (696)
..-.++...+..-|...|++.+|.+-|-+.+ -|.+-++.|...+-++.|-++.+ ..+..|..-.+...
T Consensus 879 ---d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayriak---tegg~n~~k~v~fl 946 (1636)
T KOG3616|consen 879 ---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAFL 946 (1636)
T ss_pred ---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHHH
Confidence 1112333444555666666666666554443 24445555555555555444322 22333444444444
Q ss_pred HHHhhcCChhHHHHHHH
Q 005454 534 NMYAACGRWEDVASIRS 550 (696)
Q Consensus 534 ~~~~~~g~~~~A~~~~~ 550 (696)
++-+-.| +.|.+++.
T Consensus 947 waksigg--daavklln 961 (1636)
T KOG3616|consen 947 WAKSIGG--DAAVKLLN 961 (1636)
T ss_pred HHHhhCc--HHHHHHHH
Confidence 4444444 34555554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-07 Score=92.22 Aligned_cols=226 Identities=11% Similarity=-0.009 Sum_probs=150.5
Q ss_pred CChhHHHHHHHHhccCC-CCCC--ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHH
Q 005454 302 GKEEDALILFNEMLSED-VRPD--KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378 (696)
Q Consensus 302 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 378 (696)
+..+.++.-+.+++... ..|+ ...|......+...|+.+.|...+..+++..+. +...++.+...|...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666431 1222 233555555667777888888877777776543 6788888999999999999999
Q ss_pred HHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhC
Q 005454 379 TVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455 (696)
Q Consensus 379 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 455 (696)
..|+...+ .+..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99987753 3456888888899999999999999999988 456543222222234456789999999977654 3
Q ss_pred CCCChHHHHHHHHHHhccCCH--HHHHHHHHh-CCCC----C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 456 ITPSLDHYACMINLLGRSSDV--DKAVDLIKS-LPHK----P-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 456 ~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~-~~~~----p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
..|+...+ .++..+ .|+. +++.+.+.+ .... | ...+|..+...+...|++++|...|+++++.+|.+..
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33443222 333333 4444 333333332 2221 2 2358999999999999999999999999999975433
Q ss_pred -hHHHHHHH
Q 005454 528 -PYIMLSNM 535 (696)
Q Consensus 528 -~~~~l~~~ 535 (696)
.-..++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 33334433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-06 Score=80.08 Aligned_cols=408 Identities=12% Similarity=0.066 Sum_probs=211.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHH-HHHHHH
Q 005454 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEP-TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN-ALTDMY 201 (696)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~ 201 (696)
+++.+..+.+..+++.|++++..-.+. .| +....+.+--.|....++..|...++++...-+ ...-|. --...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P--~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP--ELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHHHHHHHH
Confidence 556666667777777777777665554 34 444455555555666777777777777655432 222111 123334
Q ss_pred HcCCCHHHHHHHHHhcCCC-ChhHHHHHH--HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 005454 202 AKGGEIDKARWLFDRMNNR-NLVSWNLMI--SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGR 278 (696)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~~-~~~~~~~li--~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 278 (696)
.+.+.+.+|+++...|.+. +...-..-+ ......+++..+..++++....| +..+.+.......+.|+.+.|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 4566677777777766652 222111111 12234566666666666544322 33444444444556677777777
Q ss_pred HHHhccCC----ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccch-HHHHHHHHhhcCchhHHHHHHHHHHhC
Q 005454 279 LFHVIKEK----DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI-SSVVSSCAKLASLYHGQVVHGKAVVLG 353 (696)
Q Consensus 279 ~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~ 353 (696)
-|+...+- ....||..+ +..+.|+++.|++...++++.|++..+..- .....+ .....+..-..++...+
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~Sal--- 240 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQSAL--- 240 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHHHHH---
Confidence 66665532 334455433 334556677777777777666654322110 000000 00000000011111100
Q ss_pred CCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-----CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005454 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-----RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428 (696)
Q Consensus 354 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 428 (696)
+..+|.-...+.+.|+.+.|.+.+..|++ .|++|...+.-. -..+++.+..+-++-+.+.+ +-...||.
T Consensus 241 ----~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFA 314 (459)
T KOG4340|consen 241 ----VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFA 314 (459)
T ss_pred ----HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHH
Confidence 12233334456788999999999999985 377777665432 22455555555566666643 23457999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHhhCCC-CChHHHHHHHHHHh-ccCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-Hhc
Q 005454 429 SVLSACLHADLFERGQNHFDSISAVHGIT-PSLDHYACMINLLG-RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC-AMK 505 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~-~~~ 505 (696)
.++-.|++..-++.|-.++.+-... -.. .+...|+ |++++. -.-..++|.+-++.+...-....-..-+..- .++
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~ 392 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARH 392 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999888888876432110 000 1122232 344443 3445666665554432110000000001100 112
Q ss_pred CC----hHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 506 GD----IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 506 g~----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+ ...+.+-++..+++. ..+.+..+++|.+..++..+.++|..-.+
T Consensus 393 ~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 393 NRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred cccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 22 123344445555544 12466778889999999999999976654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-06 Score=81.15 Aligned_cols=438 Identities=11% Similarity=0.020 Sum_probs=241.5
Q ss_pred HHHHHccCChhHHHHHHhcCCCCC---c-chHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCh
Q 005454 97 LSAHARSGSVQDLRALFDKMPIRD---S-VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172 (696)
Q Consensus 97 i~~~~~~g~~~~A~~~f~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 172 (696)
+.-+....++..|+.+++.-..-+ . .+---+...+.+.|++++|+..+.-+.+.. .|+...+..+.-..--.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 344445567777777766543211 1 111123445667777777777777766543 44444444444444455666
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 005454 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252 (696)
Q Consensus 173 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 252 (696)
.+|+++-... +.++.--..|.+.-.+.|+-++-..+-+.+.+.. .---+|.+.....-.+.+|++++......+
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666665443 2223333334455555666555554444443311 111122232222335677777777766542
Q ss_pred CCCCcchHHHHHH-HHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHH
Q 005454 253 LNPDEVTVSNILG-ACFQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328 (696)
Q Consensus 253 ~~p~~~t~~~ll~-~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 328 (696)
|+-...+.-+. .|.+..-++-+.+++.--. ..++..-|.......+.=+-..|.+-.+++...+-.. |-
T Consensus 182 --~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~- 254 (557)
T KOG3785|consen 182 --PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP- 254 (557)
T ss_pred --hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-
Confidence 33333333222 3455555555555444322 2234444444444333322223333333333321110 11
Q ss_pred HHHHHHhh-----cCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcC
Q 005454 329 VVSSCAKL-----ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403 (696)
Q Consensus 329 ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 403 (696)
.+.-.++. .+-+.|.+++-.+.+.- +..--.|+-.|.+.+++.+|..+.++..+..+.-|-.-.-.++..|
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALG 330 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhh
Confidence 11112221 23456666665555432 2233456777999999999999999988766655544444444544
Q ss_pred C-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCC
Q 005454 404 Q-------DLEALALYDKLLQENLKPDSF-TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475 (696)
Q Consensus 404 ~-------~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 475 (696)
+ ..-|.+.|+-.-+++..-|.+ --.++.+++.-.-++++.+-++.++.. +=...|...+ .+..++...|.
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgn 408 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGN 408 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcC
Confidence 4 234555555444455444432 233455555556678999999999876 3334444444 57899999999
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHH-HhcCChHHHHHHHHHHHhcC-CCCC-chHHHHHHHHhhcCChhHHHHHHH
Q 005454 476 VDKAVDLIKSLPHK--PNSLIWSTLLSVC-AMKGDIKHGEMAARHLFELE-PINA-GPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 476 ~~~A~~~~~~~~~~--p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
+.+|+++|-.+... .|..+|.+++.-| .+.|..+.|.. .+++.+ |.+. .....+++-+.+++.+--|.+.|+
T Consensus 409 y~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~---~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd 485 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWD---MMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFD 485 (557)
T ss_pred hHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHH---HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999877542 4667777766554 56677776654 456665 3222 335577888999999999999999
Q ss_pred HhhhCCC
Q 005454 551 SMKSKNV 557 (696)
Q Consensus 551 ~m~~~~~ 557 (696)
.+...+.
T Consensus 486 ~lE~lDP 492 (557)
T KOG3785|consen 486 ELEILDP 492 (557)
T ss_pred HHHccCC
Confidence 8876444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-07 Score=88.16 Aligned_cols=223 Identities=13% Similarity=0.035 Sum_probs=117.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHhcCC
Q 005454 227 LMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE--K-DNVCWTTMIVGYTQNGK 303 (696)
Q Consensus 227 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 303 (696)
.|..+|.+.|.+.+|...|+.-... .|-..||..|-++|.+..+.+.|+.+|.+-.+ | |+....-+...+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4555666666666666666555543 34445555555555555555555555554442 1 22233344555555666
Q ss_pred hhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhc
Q 005454 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383 (696)
Q Consensus 304 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 383 (696)
.++|+++|+...+. -..+......+...|.-.++++.|..++..++..|.. ++..|
T Consensus 306 ~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf---------------------- 361 (478)
T KOG1129|consen 306 QEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELF---------------------- 361 (478)
T ss_pred HHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHH----------------------
Confidence 67777777666653 2233444444555555566666666666666666654 33444
Q ss_pred CCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChH
Q 005454 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS--FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461 (696)
Q Consensus 384 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 461 (696)
+.+.-+|.-.++++-++.-|++.+..--.|+. ..|..+.......|++..|.+.|.-... .-....+
T Consensus 362 ---------~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~e 430 (478)
T KOG1129|consen 362 ---------CNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGE 430 (478)
T ss_pred ---------hhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHH
Confidence 44444444445555555555555443223332 2344444444555666666666655543 2223345
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhC
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~ 486 (696)
.++.|.-+-.+.|++++|..++...
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHh
Confidence 5555555555566666665555543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.2e-05 Score=80.46 Aligned_cols=348 Identities=16% Similarity=0.173 Sum_probs=205.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHH
Q 005454 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241 (696)
Q Consensus 162 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 241 (696)
.+.+......+..|..+++.+.... .-...|..+.+-|+..|+++.|.++|-+.. .++-.|..|.++|+++.|
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 3444455667777777777665543 223446677888999999999999987643 466778889999999998
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCC
Q 005454 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321 (696)
Q Consensus 242 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 321 (696)
.++-.+. .|.......|..-..-+-+.|++.+|++++-.+..|+. .|..|-+.|..+..+++..+-...-
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~--- 880 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH--- 880 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhh---
Confidence 8876554 34444555666666667788999999998888877764 3677888888888888887643211
Q ss_pred CccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCc-----hHHHHH-
Q 005454 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV-----VSWNSM- 395 (696)
Q Consensus 322 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----~~~~~l- 395 (696)
-..|...+..-+...|++..|..-|-.+.. +.+-++||-..+.|++|.++-+.---.|. ..|..-
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksi 951 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSI 951 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhh
Confidence 123445566667778888888876655433 56778899999999999888765432221 223211
Q ss_pred -----HHHHHHcCChHHH-------------HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCC
Q 005454 396 -----INGYAQNGQDLEA-------------LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457 (696)
Q Consensus 396 -----i~~~~~~g~~~~A-------------~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 457 (696)
+..+.++|..+++ .++-+-..+. -.|.. ...+..-+...|.+++|-+.+-...+-+
T Consensus 952 ggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~~v--hlk~a~~ledegk~edaskhyveaikln--- 1025 (1636)
T KOG3616|consen 952 GGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMGEV--HLKLAMFLEDEGKFEDASKHYVEAIKLN--- 1025 (1636)
T ss_pred CcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCccc--hhHHhhhhhhccchhhhhHhhHHHhhcc---
Confidence 1223333333333 3333222221 12222 1222233456788888876665554321
Q ss_pred CChHHHHHHH-----HHHhccC-CHHHHHHHH-------------HhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHH
Q 005454 458 PSLDHYACMI-----NLLGRSS-DVDKAVDLI-------------KSLPHKPNSL--IWSTLLSVCAMKGDIKHGEMAAR 516 (696)
Q Consensus 458 p~~~~~~~li-----~~~~~~g-~~~~A~~~~-------------~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~ 516 (696)
.-..+|...+ --+.|.| +.++|.++| +.-- ||.. ++..-..+....||+.+|+-.+-
T Consensus 1026 tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~--~~~l~dv~tgqar~aiee~d~~kae~fll 1103 (1636)
T KOG3616|consen 1026 TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC--EDLLADVLTGQARGAIEEGDFLKAEGFLL 1103 (1636)
T ss_pred cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC--hhhhHHHHhhhhhccccccchhhhhhhee
Confidence 0011111110 1133444 455555444 3221 2221 33333344455677777776543
Q ss_pred HHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHH
Q 005454 517 HLFELEPINAGPYIMLSNMYAACGRWEDVASIRSS 551 (696)
Q Consensus 517 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 551 (696)
++ ..|+ ...+-|...+.|.+|+++-+.
T Consensus 1104 ra--nkp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1104 RA--NKPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred ec--CCCc------hHHHHHHHhccChHHHHHHHh
Confidence 32 1232 345667888999999987653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.4e-06 Score=79.22 Aligned_cols=316 Identities=11% Similarity=0.121 Sum_probs=182.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHH---HHHHhCCCchHHHHHHHHHHHcCCCCCcchHH-HHHHHHHh
Q 005454 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI---SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS-NILGACFQ 269 (696)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~ 269 (696)
.--|-..+...|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.=+....+ .+||-..-. .-...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 334566677788999999999988887777776664 477888888888887877776 366643221 12223678
Q ss_pred cCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHH
Q 005454 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349 (696)
Q Consensus 270 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 349 (696)
.|.++.|..-|+.+.+.++.- +....++.+ +.+.+++. .....+..+...|+...++.....+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~-~~~~eaqsk-------l~~~~e~~---------~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSN-GLVLEAQSK-------LALIQEHW---------VLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCc-chhHHHHHH-------HHhHHHHH---------HHHHHHHHHhcCCchhhHHHHHHHH
Confidence 888888888888876543310 000011111 11111111 1222333445567777777777777
Q ss_pred HHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcC---CCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 005454 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM---PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426 (696)
Q Consensus 350 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 426 (696)
++..+ .|...+..-..+|...|.+..|+.-++.. ...|.....-+-..+-..|+.+.++...++-++ +.||...
T Consensus 182 lEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~ 258 (504)
T KOG0624|consen 182 LEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKL 258 (504)
T ss_pred HhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhh
Confidence 77543 47777888888888889888887666544 355666666677777888999999988888887 6788642
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCH-----HHHHHHHH
Q 005454 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS-LPHKPNS-----LIWSTLLS 500 (696)
Q Consensus 427 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~-----~~~~~ll~ 500 (696)
....- ..+....+.+++|.+ ..+.+++.++.+..++ |..+|.. ..+..+-.
T Consensus 259 Cf~~Y------KklkKv~K~les~e~-----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 259 CFPFY------KKLKKVVKSLESAEQ-----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHHHH------HHHHHHHHHHHHHHH-----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 21111 111222222222222 1223333344333332 2222321 12223333
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+++..+++.+|.+...++++++|+|..++.--+.+|.-...+|+|+.-++...+
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555555555555555555555555443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.5e-05 Score=81.17 Aligned_cols=430 Identities=14% Similarity=0.057 Sum_probs=237.9
Q ss_pred CCcc-cHHHHHHHHHHccCChHHHHHHHccCCC---CCcchHHHHHHHHHccCChhHHHHHHhcCCC----CCcchHHHH
Q 005454 56 PNTT-FLHNRLLHFYAKSGKLFYARDLFDKMPL---RDIISWNALLSAHARSGSVQDLRALFDKMPI----RDSVSYNTA 127 (696)
Q Consensus 56 ~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~l 127 (696)
+..+ .+|..|.-+...+|++..+.+.|++... .....|+.+...|.-+|.-..|..+.++-.. |+..+--.|
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3445 8888999999999999999999998765 3567899999999999998999998876542 333333333
Q ss_pred H-HHHH-hCCChhHHHHHHHHhHHC--C----CCCCcchHHHHHHHHHcc-----------CChHHHHHHHHHHHHcCCC
Q 005454 128 I-AGFA-NKGFSREALQVFSRMQKD--R----FEPTDYTHVSALNACAQL-----------LDLRRGKQIHGKIVVGNLG 188 (696)
Q Consensus 128 i-~~~~-~~g~~~~A~~l~~~m~~~--g----~~p~~~t~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~g~~ 188 (696)
+ ..|. +.+.+++++++-.+.... + +.| ..|..+--+|... .....+.+.++..++.+..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~--~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKP--RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3 2333 457788888777776651 1 222 2333333333211 1244577788888777643
Q ss_pred CchhHHHHHHHHHHcCCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHH
Q 005454 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNN----RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264 (696)
Q Consensus 189 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 264 (696)
|+.+.-.|.--|+..++++.|.....+... .+...|..+.-.+...+++.+|+.+.+...+.- .-|......-+
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 333334455567888999999888776654 577889999999999999999999988766541 11122222222
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCC--CccchHHHHHHHHhhcC-chh
Q 005454 265 GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP--DKFSISSVVSSCAKLAS-LYH 341 (696)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~-~~~ 341 (696)
..-...++.++|......+.. .|... .+..+.++-...+++...+.-.--.| ...++..+..-....+. ..-
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 223346777777666554431 11110 01122223333444444433211111 12233222221111100 000
Q ss_pred HHHHHHHHHHhCCCCchH-HHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 005454 342 GQVVHGKAVVLGVDDDLL-VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420 (696)
Q Consensus 342 a~~~~~~~~~~~~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 420 (696)
... +.+....|... .+..+ ...|......+.+.++.++|...+.+... +
T Consensus 630 e~~----Lp~s~~~~~~~~~~~~~------------------------~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~ 679 (799)
T KOG4162|consen 630 ELK----LPSSTVLPGPDSLWYLL------------------------QKLWLLAADLFLLSGNDDEARSCLLEASK--I 679 (799)
T ss_pred ccc----cCcccccCCCCchHHHH------------------------HHHHHHHHHHHHhcCCchHHHHHHHHHHh--c
Confidence 000 11111111110 00000 12344444444555555555544444443 2
Q ss_pred CCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHH--HHHh-CCCCC-CHHH
Q 005454 421 KPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVD--LIKS-LPHKP-NSLI 494 (696)
Q Consensus 421 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~-~~~~p-~~~~ 494 (696)
.|- ...|......+...|...+|.+.|.... .+.|+ +....++..++.+.|+..-|.. ++.. ....| +...
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ea 756 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEA 756 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHH
Confidence 222 2333333344455566666666555543 33443 3455556666666665544444 4443 33344 5678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
|-.|...+.+.|+.+.|...|.-++++++.+|.
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999998876663
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-05 Score=82.16 Aligned_cols=383 Identities=13% Similarity=0.099 Sum_probs=190.5
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHH
Q 005454 168 QLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDL 244 (696)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 244 (696)
..+++..+....+.+++. .+....+.....-.+...|+.++|......-.. .+.+.|..+.-.+-...++++|+..
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 334455555555555442 222222222222234456777777766665544 3445677777666667777777777
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCC-CC
Q 005454 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VR 320 (696)
Q Consensus 245 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 320 (696)
|+.....+ +-|...+.-+--.-++.|+++.....-..+. ......|..++.++.-.|+...|..++++..+.. -.
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 77776643 2233334333333344555555444433333 3345567777777777888888888877776643 23
Q ss_pred CCccchHHHHH------HHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC--CCchHH
Q 005454 321 PDKFSISSVVS------SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSW 392 (696)
Q Consensus 321 p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~ 392 (696)
|+...+..... .....|.++.|.+.+......-+ .....-..-.+.+.+.|++++|..++..+.. ||...|
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Y 255 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDY 255 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHH
Confidence 44444433222 22345555555555444333211 1222223345667777888888888877664 333333
Q ss_pred HH-HHHHHHHcCChHHHH-HHHHHH----------------------------------HHCCCCCCHHHHHHHHHHHhc
Q 005454 393 NS-MINGYAQNGQDLEAL-ALYDKL----------------------------------LQENLKPDSFTFVSVLSACLH 436 (696)
Q Consensus 393 ~~-li~~~~~~g~~~~A~-~l~~~m----------------------------------~~~g~~p~~~t~~~ll~a~~~ 436 (696)
+- +..++.+-.+..+++ .+|... .+.|++|-...+.++ +-.
T Consensus 256 y~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~ 332 (700)
T KOG1156|consen 256 YEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKD 332 (700)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---Hhc
Confidence 32 333332222222233 333333 333332222222111 111
Q ss_pred CCcHHH----HHHHHHHhHHhh--------C-CCCChH--HHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHH-HHHHHH
Q 005454 437 ADLFER----GQNHFDSISAVH--------G-ITPSLD--HYACMINLLGRSSDVDKAVDLIKSL-PHKPNSL-IWSTLL 499 (696)
Q Consensus 437 ~g~~~~----a~~~~~~m~~~~--------~-~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll 499 (696)
-...+- +..+...+.... . -+|... ++-.++..|-+.|+++.|..+++.. ...|+.+ .|..=.
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~Ka 412 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKA 412 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHH
Confidence 111110 111111111000 0 023332 2334556666677777777776653 3345544 343444
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
..+...|+++.|...++++.++|-.|...-..-++-..++++.++|.++.......|
T Consensus 413 RI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 413 RIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 555666677777777777777665554444445555666677777777666665544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.6e-05 Score=80.99 Aligned_cols=195 Identities=16% Similarity=0.141 Sum_probs=115.8
Q ss_pred ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC--CCchHHHHHHHHHH
Q 005454 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSWNSMINGYA 400 (696)
Q Consensus 323 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 400 (696)
+..|+.+..+-.+.|.+.+|.+-+-++ .|+..|...++...+.|.+++-.+.+....+ +.+..=+.+|-+|+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 345666666666666666665544332 3556666677777777777776666654332 12223345666777
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHH
Q 005454 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 480 (696)
+.++..+..++. .-||..-...+..-|...|.++.|.-+|.... .|..|...+...|.++.|.
T Consensus 1178 kt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS----------N~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1178 KTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS----------NFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHH
Confidence 777666655443 35666666666677777777776666664432 3455555566666666665
Q ss_pred HHHHhCCC---------------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 005454 481 DLIKSLPH---------------------------KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533 (696)
Q Consensus 481 ~~~~~~~~---------------------------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (696)
+.-++... --...-..-|+.-|...|-+++-..+++..+.++....+.|..|+
T Consensus 1241 D~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELa 1320 (1666)
T KOG0985|consen 1241 DAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELA 1320 (1666)
T ss_pred HHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 55444320 011222344555566667777777777777777777777777777
Q ss_pred HHHhhcC
Q 005454 534 NMYAACG 540 (696)
Q Consensus 534 ~~~~~~g 540 (696)
-.|++-.
T Consensus 1321 iLYskyk 1327 (1666)
T KOG0985|consen 1321 ILYSKYK 1327 (1666)
T ss_pred HHHHhcC
Confidence 7777643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.9e-05 Score=83.16 Aligned_cols=369 Identities=12% Similarity=0.103 Sum_probs=174.1
Q ss_pred HHHccCChHHHHHHHccCCCCCcchHHHHHHHHHccCChhHHHHHHhcCCCC-----------Cc-chHHHHHHHHHhCC
Q 005454 68 FYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR-----------DS-VSYNTAIAGFANKG 135 (696)
Q Consensus 68 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----------~~-~~~~~li~~~~~~g 135 (696)
.|...|++|.|.+-...+. +..+|..|.+++.+..+++-|.-.+-.|... |. ..=.-..-.....|
T Consensus 737 fyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELG 814 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHh
Confidence 3445566666655544443 3355666777776666666666555555310 00 11111112223445
Q ss_pred ChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHH
Q 005454 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215 (696)
Q Consensus 136 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 215 (696)
..++|+.+|++-.+. -.+=..|-..|.+++|.++-+.--+..+. .+|-.-..-+-..++.+.|++.|+
T Consensus 815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHH
Confidence 555555555555432 11112233344555554443322111111 112222222333444555555444
Q ss_pred hcCC-----------------------CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 005454 216 RMNN-----------------------RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272 (696)
Q Consensus 216 ~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 272 (696)
+... +|...|.-...-+-..|+.+.|+.+|...+. |-++++..|-.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 4321 1111111122222234444445444444332 2333344444455
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCch------------
Q 005454 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY------------ 340 (696)
Q Consensus 273 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~------------ 340 (696)
.++|-++-++- .|......+...|-..|++.+|...|.+.+ +|...|+.|-..+--+
T Consensus 954 ~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen 954 TDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGS 1022 (1416)
T ss_pred chHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCch
Confidence 55554444332 245556667777888888888888887765 3445555443322111
Q ss_pred ---hHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC--------------CCCchHHHHHHHHHHHcC
Q 005454 341 ---HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--------------TRNVVSWNSMINGYAQNG 403 (696)
Q Consensus 341 ---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------------~~~~~~~~~li~~~~~~g 403 (696)
.|..+|++ .|. .....+-.|-+.|.+..|+++-=+-. ..|+...+.-..-++.+.
T Consensus 1023 d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1023 DLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred hHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 11111111 111 11223345666777666665421111 135555566666677777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhccCCHHHH
Q 005454 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LDHYACMINLLGRSSDVDKA 479 (696)
Q Consensus 404 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 479 (696)
++++|..++-...+ |...+..|...| +.-..++-+.|.-...-.|+ ......+.+.+.++|.+..|
T Consensus 1095 qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~A 1164 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAA 1164 (1416)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHH
Confidence 88888877765544 334444444433 22233333333222112233 24566677888888888888
Q ss_pred HHHHHhCCC
Q 005454 480 VDLIKSLPH 488 (696)
Q Consensus 480 ~~~~~~~~~ 488 (696)
-+-|...+.
T Consensus 1165 tKKfTQAGd 1173 (1416)
T KOG3617|consen 1165 TKKFTQAGD 1173 (1416)
T ss_pred HHHHhhhhh
Confidence 877776653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.76 E-value=4e-06 Score=88.54 Aligned_cols=296 Identities=12% Similarity=0.105 Sum_probs=135.0
Q ss_pred HHHHcCCCHHHHHHHHHhcCC--CChhH-HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHH-h-----
Q 005454 199 DMYAKGGEIDKARWLFDRMNN--RNLVS-WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-Q----- 269 (696)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-~----- 269 (696)
..+...|++++|++.+++-.. .|..+ .......+.+.|+.++|..+|..+...+ |+...|-..+..+. -
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 445677888888888877554 44444 4455667778888888888888888764 56665544444333 1
Q ss_pred cCCHHHHHHHHHhccCCChh--HHHHHHHHHHhcCCh-hHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHH
Q 005454 270 TGRIDDAGRLFHVIKEKDNV--CWTTMIVGYTQNGKE-EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346 (696)
Q Consensus 270 ~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 346 (696)
....+....+++++...-+. +...+.-.+.....+ ..+...+..++..|+++ +|+.+-..|...........++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 12355556666655432111 111111111111122 23334444555555543 3333333333332222222222
Q ss_pred HHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHH--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-
Q 005454 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW--NSMINGYAQNGQDLEALALYDKLLQENLKPD- 423 (696)
Q Consensus 347 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 423 (696)
....... ...|...... =..-..|....| .-+...|-..|++++|++..++.++. .|+
T Consensus 167 ~~~~~~l---------------~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~ 227 (517)
T PF12569_consen 167 EEYVNSL---------------ESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTL 227 (517)
T ss_pred HHHHHhh---------------cccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCc
Confidence 2222110 0000000000 000001222223 23344455556666666666655552 344
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCC-----C----HHH
Q 005454 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP-----N----SLI 494 (696)
Q Consensus 424 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-----~----~~~ 494 (696)
...|..-...+-+.|++.+|.+.++.... --.-|...-+-.+..+.|+|++++|.+.+.....+. | ..+
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~ 305 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCM 305 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence 23444444555566666666665555543 112233333444555556666666655554433211 1 112
Q ss_pred H--HHHHHHHHhcCChHHHHHHHHHHHh
Q 005454 495 W--STLLSVCAMKGDIKHGEMAARHLFE 520 (696)
Q Consensus 495 ~--~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (696)
| .....+|.+.|++..|.+-+..+.+
T Consensus 306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 306 WFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 2223455556666666555554433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.9e-05 Score=88.70 Aligned_cols=361 Identities=12% Similarity=0.040 Sum_probs=222.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCCChhH--HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCH
Q 005454 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVS--WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273 (696)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 273 (696)
.....|...|++.+|..........+... ...........|+++.+...+..+.......+..........+...|+.
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 33445666777777777666665432221 1122234455677777777766552221122223333344445678899
Q ss_pred HHHHHHHHhccC----CC---h---h--HHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCc----cchHHHHHHHHhhc
Q 005454 274 DDAGRLFHVIKE----KD---N---V--CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK----FSISSVVSSCAKLA 337 (696)
Q Consensus 274 ~~A~~~~~~~~~----~~---~---~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~ 337 (696)
++|...+..... .+ . . ....+...+...|++++|...+++....-...+. .....+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 998888775531 11 1 1 1122334556789999999999987653111111 12334445566789
Q ss_pred CchhHHHHHHHHHHhCCC-----CchHHHHHHHhhHHhcCChHHHHHHHhcCCC-------CC----chHHHHHHHHHHH
Q 005454 338 SLYHGQVVHGKAVVLGVD-----DDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-------RN----VVSWNSMINGYAQ 401 (696)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~ 401 (696)
+++.|...+..+....-. ........+...+...|+++.|...+++... ++ ...+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 999999988887653211 1123445667778889999999988775431 11 1234455566777
Q ss_pred cCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHH-----HHHHHHHhc
Q 005454 402 NGQDLEALALYDKLLQE--NLKPD--SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY-----ACMINLLGR 472 (696)
Q Consensus 402 ~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~ 472 (696)
.|++++|...+++.... ...|. ..++..+.......|+.++|.+.+..+............+ ...+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 89999999999887653 11222 2334445556778899999999988875421111111111 112244556
Q ss_pred cCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC------CCCchHHHHHHHHhhcC
Q 005454 473 SSDVDKAVDLIKSLPHK--PNS----LIWSTLLSVCAMKGDIKHGEMAARHLFELEP------INAGPYIMLSNMYAACG 540 (696)
Q Consensus 473 ~g~~~~A~~~~~~~~~~--p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g 540 (696)
.|+.+.|.+++...... ... ..+..+..++...|+.++|...++++++... ....++..++.+|...|
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 89999999998765431 111 1245666778889999999999999887531 12246778899999999
Q ss_pred ChhHHHHHHHHhhhCC
Q 005454 541 RWEDVASIRSSMKSKN 556 (696)
Q Consensus 541 ~~~~A~~~~~~m~~~~ 556 (696)
+.++|...+.+..+..
T Consensus 746 ~~~~A~~~L~~Al~la 761 (903)
T PRK04841 746 RKSEAQRVLLEALKLA 761 (903)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-06 Score=85.62 Aligned_cols=157 Identities=11% Similarity=0.099 Sum_probs=86.2
Q ss_pred HHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----C
Q 005454 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH----A 437 (696)
Q Consensus 362 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~ 437 (696)
.....+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..| .+...+..++.. .
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHhCc
Confidence 33345566778888877777665 3455555567777778888888888888776 3333 333344444322 2
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCh-HHHHHH
Q 005454 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS-LPHKPN-SLIWSTLLSVCAMKGDI-KHGEMA 514 (696)
Q Consensus 438 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~ll~~~~~~g~~-~~a~~~ 514 (696)
+.+.+|..+|+++.. ...++..+.+.+.-+....|++++|.+++++ +...|+ ..++..++......|+. +.+.+.
T Consensus 181 e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 356677777777654 3345555556666666666666666666554 222232 22444444444444544 445555
Q ss_pred HHHHHhcCCCC
Q 005454 515 ARHLFELEPIN 525 (696)
Q Consensus 515 ~~~~~~~~p~~ 525 (696)
..++....|..
T Consensus 259 l~qL~~~~p~h 269 (290)
T PF04733_consen 259 LSQLKQSNPNH 269 (290)
T ss_dssp HHHCHHHTTTS
T ss_pred HHHHHHhCCCC
Confidence 55555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4e-07 Score=92.42 Aligned_cols=216 Identities=17% Similarity=0.144 Sum_probs=172.8
Q ss_pred HHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHH
Q 005454 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEAL 409 (696)
Q Consensus 333 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 409 (696)
+.+.|++..|.-.|+.+++..+. +...|--|...-+..++-..|+..+++..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 35677888888888888887764 778888888888888888888888887653 45667777888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHH
Q 005454 410 ALYDKLLQENLKPDSFTFVSVL-----------SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478 (696)
Q Consensus 410 ~l~~~m~~~g~~p~~~t~~~ll-----------~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 478 (696)
..++.-+... |... .+. ....+...+....++|-.+....+..+|.+++.+|.-+|.-.|.+++
T Consensus 374 ~~L~~Wi~~~--p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhC--ccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999887632 1110 000 12233344566677777777666767899999999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 479 AVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 479 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
|.+.|+.. ..+| |..+||-|...+....+.++|..+|.+++++.|.-..+...|+-.|...|.++||.+.|-....
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999874 5567 5669999999999999999999999999999999999999999999999999999999876654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.5e-06 Score=75.90 Aligned_cols=193 Identities=14% Similarity=0.061 Sum_probs=108.8
Q ss_pred HHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHH
Q 005454 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEA 408 (696)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 408 (696)
.|...|+...|+.-++++++..+. +..++..+...|.+.|..+.|.+.|+... +.+-...|....-+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 344444444444444444444332 44455555566666666666666666443 33444566666666666677777
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC
Q 005454 409 LALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487 (696)
Q Consensus 409 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 487 (696)
...|++....-.-|. ..||..+.-+..+.|+.+.|..+|++..+. .+-.......+.......|++..|..+++...
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 777766665322222 346666666666667777777777666541 12223445556666666777777766666543
Q ss_pred C--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 488 H--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 488 ~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
. .++..+.-..+..-...||.+.+.+.-.++....|.+..
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 2 245544444455555667776666666666666665443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-05 Score=82.46 Aligned_cols=131 Identities=11% Similarity=0.015 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHH----HHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHH
Q 005454 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC----MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498 (696)
Q Consensus 423 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 498 (696)
+...|........+.+.+..|.+...+...-...+-+...|+. ...++...|.++.|..-+...+..-+..+-.+-
T Consensus 966 ~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~ 1045 (1238)
T KOG1127|consen 966 LCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTD 1045 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhh
Confidence 3456666666666666666666665554432222334444443 334455567777776666555444444433333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCch---HHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPINAGP---YIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+.. .-.|+++.+...|++++.+-..+... ...++.....++.-+.|...+-+...
T Consensus 1046 l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1046 LTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 333 44678999999999998877555443 33445555667777778777655543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00014 Score=73.63 Aligned_cols=70 Identities=9% Similarity=0.140 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCCC---CcchHHHHHHHHHccCChhHHHHHHhcCCC--CCcchHHHHHHH
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPLR---DIISWNALLSAHARSGSVQDLRALFDKMPI--RDSVSYNTAIAG 130 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~ 130 (696)
.+|+.||+-+... ..++++..++++..+ .+..|..-|..-.+..+++..+++|.+-.. -++..|..-|+-
T Consensus 21 ~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 21 DSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 6777777766555 777777777777653 455677777777777777777777766543 356666666653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.9e-05 Score=75.51 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=60.0
Q ss_pred HHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHHHccCChHH
Q 005454 99 AHARSGSVQDLRALFDKMP---IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY-THVSALNACAQLLDLRR 174 (696)
Q Consensus 99 ~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~ 174 (696)
+....|+++.|..+|-+.. .+|-+.|+.-..+|+..|++++|++=-.+-++ +.|+-. -|...-.++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 3345566666666665543 23555666666677777777766665555543 245433 45666666666677777
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHH
Q 005454 175 GKQIHGKIVVGNLGGNVFVRNALTDMY 201 (696)
Q Consensus 175 a~~~~~~~~~~g~~~~~~~~~~li~~~ 201 (696)
|..-|..-++.. +.+...++.|.+++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 777776666654 33555666666665
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.8e-05 Score=81.58 Aligned_cols=276 Identities=11% Similarity=0.059 Sum_probs=148.2
Q ss_pred HhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCC-CccchHHHHHHHHhhcCchhHH
Q 005454 268 FQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP-DKFSISSVVSSCAKLASLYHGQ 343 (696)
Q Consensus 268 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~ 343 (696)
...|.+.-|...|-.-. +.+..+|..+...+.++.+++-|...|...+. +.| |...|..........|+.-+..
T Consensus 827 sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHH
Confidence 33344444444443222 23455566666666677777777777777664 333 3333333333334456555666
Q ss_pred HHHHHHH--H--hCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC-------------CCCchHHHHHHHHHHHcCChH
Q 005454 344 VVHGKAV--V--LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-------------TRNVVSWNSMINGYAQNGQDL 406 (696)
Q Consensus 344 ~~~~~~~--~--~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------------~~~~~~~~~li~~~~~~g~~~ 406 (696)
.++..-. . .|--++...+-+........|+.++-+..-+.+. +.+...|.......-+.+.+.
T Consensus 905 ~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~ 984 (1238)
T KOG1127|consen 905 ILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYR 984 (1238)
T ss_pred HHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHH
Confidence 6555522 1 2223344334333334445565555444444433 124456777777777778888
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHH----HHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH--hccCCHHHH
Q 005454 407 EALALYDKLLQE-NLKPDSFTFVSV----LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL--GRSSDVDKA 479 (696)
Q Consensus 407 ~A~~l~~~m~~~-g~~p~~~t~~~l----l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~--~~~g~~~~A 479 (696)
+|.++..+.+.- ..+-|..+|+.+ .+.++..|.++.|..- .+..|-...-..+...+ .-.++++++
T Consensus 985 ~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a-------~~~~~~evdEdi~gt~l~lFfkndf~~s 1057 (1238)
T KOG1127|consen 985 AALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA-------SWKEWMEVDEDIRGTDLTLFFKNDFFSS 1057 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh-------hcccchhHHHHHhhhhHHHHHHhHHHHH
Confidence 888877775431 123344455432 2233445555544433 33333322212222222 336889999
Q ss_pred HHHHHhCCC----CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 480 VDLIKSLPH----KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 480 ~~~~~~~~~----~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
.+.|++.-. +.| ++....++.+....+..+.|...+-+...+.|.+......|.-++.-..+-.....+.++.
T Consensus 1058 l~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel 1135 (1238)
T KOG1127|consen 1058 LEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEEL 1135 (1238)
T ss_pred HHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 999987532 234 3355566666677888888988888888888888777776666655444433333333333
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00032 Score=74.35 Aligned_cols=238 Identities=12% Similarity=0.079 Sum_probs=133.1
Q ss_pred ChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCCC-----------Cc
Q 005454 22 TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR-----------DI 90 (696)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----------~~ 90 (696)
|..|-..++.--....-|+.+.|....+.+. ++.+|..+.++|.+..++|-|.-.+..|... |.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 4555555654433235566666655444332 2378999999999999999998888887631 22
Q ss_pred -chHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHcc
Q 005454 91 -ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169 (696)
Q Consensus 91 -~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 169 (696)
..-....-.-...|.+++|..++.+-.+ |..|=..|-..|.+++|+++-+.=.+--+ ..||..-..-+...
T Consensus 800 ~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 800 EEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEAR 871 (1416)
T ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhh
Confidence 2222222233456777777777776543 33344455566777777776544322111 12444444444455
Q ss_pred CChHHHHHHHHHHH----------HcCC---------CCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHH
Q 005454 170 LDLRRGKQIHGKIV----------VGNL---------GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230 (696)
Q Consensus 170 ~~~~~a~~~~~~~~----------~~g~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 230 (696)
+|.+.|.+.|+..- +..+ ..|...|.--....-..|++|.|+.+|.... -|-.++.
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~Vr 946 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVR 946 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhhee
Confidence 56666665554321 1110 1234444444444556788888888887654 3455555
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhc
Q 005454 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283 (696)
Q Consensus 231 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 283 (696)
..|-.|+.++|-++-++ .-|....-.+.+.|-..|++.+|..+|-+.
T Consensus 947 I~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55556666666655443 123344445555566666666666655544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-07 Score=91.44 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=116.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChH---HHHHHHHHHhcc
Q 005454 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD---HYACMINLLGRS 473 (696)
Q Consensus 397 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~ 473 (696)
..+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+ +..|.. ...+.+..+.-.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCc
Confidence 4456679999999988642 3556667788899999999999999999974 445532 233344444444
Q ss_pred CCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCh-hHHHHHHH
Q 005454 474 SDVDKAVDLIKSLPHK--PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW-EDVASIRS 550 (696)
Q Consensus 474 g~~~~A~~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 550 (696)
+.+.+|..+|+++..+ +++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 5899999999997654 67788899999999999999999999999999999999999999999999999 66788888
Q ss_pred Hhhh
Q 005454 551 SMKS 554 (696)
Q Consensus 551 ~m~~ 554 (696)
+++.
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 8876
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-05 Score=80.89 Aligned_cols=60 Identities=12% Similarity=-0.001 Sum_probs=41.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC---------CCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 497 TLLSVCAMKGDIKHGEMAARHLFELEP---------INAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
....++...|+.+.|...++.+....- .........+.++...|++++|.+.+......+
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 445556667777777777776644221 123456677888999999999999998876644
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.8e-05 Score=75.57 Aligned_cols=401 Identities=12% Similarity=0.044 Sum_probs=229.3
Q ss_pred HHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHcCCCH
Q 005454 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN-VFVRNALTDMYAKGGEI 207 (696)
Q Consensus 129 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 207 (696)
.+.+..|+++.|+.+|.+..... ++|.+.|+.-..+++..|+++.|.+=-..-++. .|+ ..-|+.+..++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34567788888988888887654 447777888888888888888877655555443 344 34677777777778888
Q ss_pred HHHHHHHHhcCCC---ChhHHHHHHHHHHhCCCchHH-HHHHHHH-HHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 005454 208 DKARWLFDRMNNR---NLVSWNLMISGYLKNGQPKKC-IDLFQEM-QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282 (696)
Q Consensus 208 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A-~~l~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 282 (696)
++|...|.+-.+. |...++-+..++ ..+.+ .+.|..- .-.++.-++.|-. +...-.+-.-+..+..
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~-----~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNY-----SLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhh-----hhccHHHHHHHHHhhc
Confidence 8888888776652 334555555555 11111 1111100 0001111111111 1111111111111111
Q ss_pred ccCCChhH---HHHHHHHHHhcCChhH-HHHHHHHhc-cCCCCC---------C-------------ccchHHHHHHHHh
Q 005454 283 IKEKDNVC---WTTMIVGYTQNGKEED-ALILFNEML-SEDVRP---------D-------------KFSISSVVSSCAK 335 (696)
Q Consensus 283 ~~~~~~~~---~~~li~~~~~~g~~~~-A~~~~~~m~-~~g~~p---------~-------------~~t~~~ll~~~~~ 335 (696)
.+. ++-. ...++.+.......+. ....-..+. ..+..| . ..-...+.++..+
T Consensus 158 ~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 158 NPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred CcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 110 0000 0011111110000000 000000000 000111 0 1123445556666
Q ss_pred hcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCch----------HHHHHHHHHHHcCCh
Q 005454 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV----------SWNSMINGYAQNGQD 405 (696)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~~~g~~ 405 (696)
..+++.+.+-+....+.. .+...++....+|...|........-....+..-. +...+..+|.+.+++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 777888888888888776 46666777777888888777666554443322111 222344567777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChH-HHHHHHHHHhccCCHHHHHHHHH
Q 005454 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD-HYACMINLLGRSSDVDKAVDLIK 484 (696)
Q Consensus 406 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~ 484 (696)
+.|+..|++.+.....||..+ +....+++....+... -+.|... -...-...+.+.|++..|+..+.
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 999999988776555554322 2223344444433332 2334431 11222667788999999999987
Q ss_pred hCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 485 SLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 485 ~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
++.. .| |...|.....+|.+.|++..|..-.+..++++|+....|..=+.++....+|++|.+.|.+-.+..
T Consensus 383 eAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 383 EAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7433 45 566889999999999999999999999999999999999999999999999999999998776533
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00012 Score=75.70 Aligned_cols=190 Identities=14% Similarity=0.064 Sum_probs=101.7
Q ss_pred HHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-----CCc--hHHHHHHHHHHHcC
Q 005454 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-----RNV--VSWNSMINGYAQNG 403 (696)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~~g 403 (696)
..+...|+++.|...++...+..+. +...+..+...|...|++++|...++...+ ++. ..|..+...+...|
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 3455566666666666666665432 355566667777777777777777766542 111 23455677777888
Q ss_pred ChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHhcCCcHHHHHHH--HHHhHHhhCCC--CChHHHHHHHHHHhccCC
Q 005454 404 QDLEALALYDKLLQENL-KPDSFTF-V--SVLSACLHADLFERGQNH--FDSISAVHGIT--PSLDHYACMINLLGRSSD 475 (696)
Q Consensus 404 ~~~~A~~l~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~~~a~~~--~~~m~~~~~~~--p~~~~~~~li~~~~~~g~ 475 (696)
+.++|+.+|++...... .+..... . .++.-+...|..+.+.++ ....... ... .........+.++...|+
T Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 201 DYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCC
Confidence 88888888887754321 1111111 1 222223333433333322 1111110 111 111122245666778888
Q ss_pred HHHHHHHHHhCCC--CC---C------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 476 VDKAVDLIKSLPH--KP---N------SLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 476 ~~~A~~~~~~~~~--~p---~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
.++|..+++.+.. +. . ....-...-++...|+.+.|.+.+..++.+-
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888866422 11 1 1112222334567899999999988887644
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.7e-06 Score=79.06 Aligned_cols=179 Identities=10% Similarity=0.034 Sum_probs=110.7
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCCC--CC-c---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----H
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RN-V---VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF----T 426 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 426 (696)
....+..++..|.+.|+++.|...|+++.. |+ . ..|..+..+|...|++++|+..++++++. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 345555666667777777777777765542 21 1 24566666777777777777777777663 33321 3
Q ss_pred HHHHHHHHhcC--------CcHHHHHHHHHHhHHhhCCCCChH-HHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHH
Q 005454 427 FVSVLSACLHA--------DLFERGQNHFDSISAVHGITPSLD-HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497 (696)
Q Consensus 427 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 497 (696)
+..+..++... |+.++|.+.|+.+.+. .|+.. .+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33333444433 5566667766666643 23321 11111110 0000000 001124
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 498 LLSVCAMKGDIKHGEMAARHLFELEPINA---GPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
+...+...|+++.|...++++++..|+++ .++..++.+|...|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55667889999999999999999987654 68899999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00024 Score=83.58 Aligned_cols=86 Identities=7% Similarity=0.078 Sum_probs=41.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhcCCcHHHHHHHHHHhHHh---hCCCCC-hHHHHHHHHHHhc
Q 005454 400 AQNGQDLEALALYDKLLQENLKPDS---FTFVSVLSACLHADLFERGQNHFDSISAV---HGITPS-LDHYACMINLLGR 472 (696)
Q Consensus 400 ~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~ 472 (696)
...|+.+.|..++............ .....+..++...|+.++|...++..... .+..++ ..+...+..++.+
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 3455666666665544321111110 01233444555566666666666655432 122222 2344555566666
Q ss_pred cCCHHHHHHHHHh
Q 005454 473 SSDVDKAVDLIKS 485 (696)
Q Consensus 473 ~g~~~~A~~~~~~ 485 (696)
.|+.++|...+.+
T Consensus 744 ~G~~~~A~~~L~~ 756 (903)
T PRK04841 744 QGRKSEAQRVLLE 756 (903)
T ss_pred cCCHHHHHHHHHH
Confidence 6766666666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.1e-06 Score=74.15 Aligned_cols=122 Identities=11% Similarity=0.021 Sum_probs=81.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-C
Q 005454 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-H 488 (696)
Q Consensus 410 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~ 488 (696)
.+|++.++ +.|+. +.....++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++.. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555555 34553 33455566677777777777777664 223345667777777777777777777776642 2
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 489 KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 489 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
.| +...|..+..++...|+.++|...+++++++.|+++..+...+++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33 55677777777777888888888888888888888777777666543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.9e-06 Score=76.17 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=107.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCC
Q 005454 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475 (696)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 475 (696)
+..|...|+++......+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3456677777665444322211 11 012235566777777776665 335567888888888889999
Q ss_pred HHHHHHHHHhCC-CCC-CHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 476 VDKAVDLIKSLP-HKP-NSLIWSTLLSVC-AMKGD--IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 476 ~~~A~~~~~~~~-~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
+++|...+++.. ..| +..++..+..++ ...|+ .++|..+++++++.+|+++.++..++..+...|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999988887743 344 556777777764 66676 5999999999999999999999999999999999999999999
Q ss_pred HhhhCC
Q 005454 551 SMKSKN 556 (696)
Q Consensus 551 ~m~~~~ 556 (696)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 997744
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.1e-05 Score=71.45 Aligned_cols=302 Identities=11% Similarity=0.117 Sum_probs=168.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhccCC--ChhHHHH-HHHHHHh
Q 005454 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNP-DEVTVSNILGACFQTGRIDDAGRLFHVIKEK--DNVCWTT-MIVGYTQ 300 (696)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~ 300 (696)
+.+.+..+.+..+++.|++++..-.+.. | +....+.+...|....++..|-..++++... ...-|.. -...+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 4555666677777888888777666543 3 4455566666677777788888887777642 2223322 2345666
Q ss_pred cCChhHHHHHHHHhccCCCCCCccchHHHHHH--HHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHH
Q 005454 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSS--CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378 (696)
Q Consensus 301 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 378 (696)
.+.+..|+++...|... |+...-..-+.+ ....+++..++.+.++... +.+..+.+.......+.|+.+.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHH
Confidence 77777788777777642 221111111111 1123444444444443321 123333333344444555555555
Q ss_pred HHHhcCCC----CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhh
Q 005454 379 TVFNMMPT----RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454 (696)
Q Consensus 379 ~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 454 (696)
+-|+...+ .....||.-+ +..+.|+++.|+++..+.++.|++.-+. + .-|...++..+ .
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-l--------gIGm~tegiDv-r------ 227 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-L--------GIGMTTEGIDV-R------ 227 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-c--------CccceeccCch-h------
Confidence 55555442 1223444322 2333455555555555555555321111 0 00111111000 0
Q ss_pred CC-CCChHHHHHHH-------HHHhccCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 455 GI-TPSLDHYACMI-------NLLGRSSDVDKAVDLIKSLPH----KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 455 ~~-~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
.+ .|-..+-+.++ -.+.+.|+++.|.+.+..||- +.|++|...+.-. -..++...+.+-+.-+++++
T Consensus 228 svgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 228 SVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred cccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 00 01112223333 345788999999999999875 3577777665432 23566777777788889999
Q ss_pred CCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 523 PINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 523 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
|-.++++..+.-+|++..-++-|..++.+-
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 988899999999999999999999887543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-05 Score=87.95 Aligned_cols=199 Identities=11% Similarity=0.130 Sum_probs=165.0
Q ss_pred CchHHHHHHHhhHHhcCChHHHHHHHhcCCC--------CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 005454 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--------RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427 (696)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 427 (696)
.....|-..+......++.+.|++++++... .-...|.++++.-...|.-+...++|+++.+- --....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 3556677777777888889999888887652 12347888888888889888999999999883 2234678
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHH
Q 005454 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP---NSLIWSTLLSVCA 503 (696)
Q Consensus 428 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~ 503 (696)
..|...|...+.+++|.++++.|.++++ -....|..+++.+.+..+-++|..++++. ..-| ......-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8889999999999999999999999665 66788999999999999999999998763 3223 3445556666678
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCc
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 558 (696)
++||.+++..+|+.++.-.|.....|..+++.-.+.|..+.++.+|++....++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999887763
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.1e-07 Score=57.18 Aligned_cols=33 Identities=39% Similarity=0.541 Sum_probs=25.9
Q ss_pred CCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 005454 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218 (696)
Q Consensus 186 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 218 (696)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677788888888888888888888888887774
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-07 Score=57.28 Aligned_cols=33 Identities=36% Similarity=0.649 Sum_probs=23.7
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc
Q 005454 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284 (696)
Q Consensus 252 g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 284 (696)
|+.||..||++++.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777663
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.7e-05 Score=75.35 Aligned_cols=211 Identities=9% Similarity=0.007 Sum_probs=126.9
Q ss_pred CchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC-ChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCCh--HHHHHH
Q 005454 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG-VTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQD--LEALAL 411 (696)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~l 411 (696)
..+.|......+++..+. +..+++....++.+.| ++++++..++.+. .++..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 334444444444443322 2233333333444444 4566666665544 23444566554445555542 566777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc---CCH----HHHHHHH-
Q 005454 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS---SDV----DKAVDLI- 483 (696)
Q Consensus 412 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~- 483 (696)
++++++.. +-|..+|.....++.+.|.++++++.++++.+. -.-+...|+....++.+. |.. +++.++.
T Consensus 131 ~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 131 TRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 77777643 334566766666677777777777777777753 223344555554444433 222 4566666
Q ss_pred HhCCCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC------------------
Q 005454 484 KSLPHKP-NSLIWSTLLSVCAMK----GDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG------------------ 540 (696)
Q Consensus 484 ~~~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------ 540 (696)
+.+...| |...|+.+...+... ++..+|...+.+++..+|.++.+...|+++|+...
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 3344455 566898888888774 34567888899999999999999999999998743
Q ss_pred ChhHHHHHHHHh
Q 005454 541 RWEDVASIRSSM 552 (696)
Q Consensus 541 ~~~~A~~~~~~m 552 (696)
..++|.++++.+
T Consensus 288 ~~~~a~~~~~~l 299 (320)
T PLN02789 288 DSTLAQAVCSEL 299 (320)
T ss_pred cHHHHHHHHHHH
Confidence 236677777777
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-05 Score=70.15 Aligned_cols=99 Identities=12% Similarity=-0.010 Sum_probs=87.0
Q ss_pred CCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 005454 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533 (696)
Q Consensus 456 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (696)
+.|+ .+..+...+...|++++|...|+... ..| +...|..+..++...|++++|...++++++++|.++.++..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3455 35567888999999999999998743 344 6779999999999999999999999999999999999999999
Q ss_pred HHHhhcCChhHHHHHHHHhhhCC
Q 005454 534 NMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 534 ~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
.++...|++++|...+++..+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999887643
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.3e-06 Score=70.46 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
.+..-.+...+...|++++|..+|+-... .| +..-|-.|..+|...|++++|...|.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 45555667778899999999999987533 45 56688999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHH
Q 005454 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~ 601 (696)
..|+.+.|.+-|+...... ..+|+..++..+.+..++.|.+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhhc
Confidence 9999999999999886522 1357777777777777666643
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.7e-05 Score=78.53 Aligned_cols=218 Identities=18% Similarity=0.195 Sum_probs=154.5
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhH
Q 005454 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEED 306 (696)
Q Consensus 230 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 306 (696)
.-+.++|++.+|.-.|+...... +-+...|..|.......++-..|...+.+..+ .|....-+|.-.|...|.-.+
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 34567788888888888777664 33456677777777777777777777766653 356667777778888888889
Q ss_pred HHHHHHHhccCCCC--------CCccchHHHHHHHHhhcCchhHHHHHHHH-HHhCCCCchHHHHHHHhhHHhcCChHHH
Q 005454 307 ALILFNEMLSEDVR--------PDKFSISSVVSSCAKLASLYHGQVVHGKA-VVLGVDDDLLVSSALIDMYCKCGVTDDA 377 (696)
Q Consensus 307 A~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~y~~~g~~~~A 377 (696)
|+..++.-+....+ ++..+-.. ........+....++|-.+ ...+..+|+.+...|.-.|--.|+++.|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99888877543210 01110000 1111122233444444444 4445457888999999999999999999
Q ss_pred HHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHhHH
Q 005454 378 WTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF-TFVSVLSACLHADLFERGQNHFDSISA 452 (696)
Q Consensus 378 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 452 (696)
...|+... +.|...||.|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.+++|...|-.+..
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999776 34677999999999999999999999999999 789863 455566678999999999988876553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-05 Score=82.40 Aligned_cols=189 Identities=19% Similarity=0.188 Sum_probs=117.6
Q ss_pred CCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005454 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432 (696)
Q Consensus 353 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 432 (696)
.++|-...-..+...+.++|-...|..+|++. ..|-..|.+|+..|+..+|..+..+-.+ -+||+..|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34455566667788888888888888888864 5677788888888888888888888777 4788888888888
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHH
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS-LPHKP-NSLIWSTLLSVCAMKGDIKH 510 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~ 510 (696)
......-+++|.++++..... .-..+.....+.++++++.+.++. +...| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 777777777787777665432 011111222334555555555543 33333 23355555555555555555
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
|.+.|.+.+.++|++...|+.++-+|.+.|+-.+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 5555555555555555555555555555555555555555554433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.5e-05 Score=83.40 Aligned_cols=210 Identities=10% Similarity=0.037 Sum_probs=139.6
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC--CCCchHHHHHHHHHHHcCCh
Q 005454 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMINGYAQNGQD 405 (696)
Q Consensus 328 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 405 (696)
.+...+...|-...|..+++.. ..+...+.+|+..|+.+.|..+...-. +|+...|-.+.+......-+
T Consensus 403 ~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 3444455556666666666543 234456667777777777766655333 45666666666666666667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHh
Q 005454 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485 (696)
Q Consensus 406 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 485 (696)
++|.++++..... .-..+.......++++++.+.|+.-.+-+ +....+|-.+..+..+.++++.|.+.|..
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 7777776654321 11111111233677788877777655422 22345666667777778888888877765
Q ss_pred -CCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 486 -LPHKPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 486 -~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
....||.. .||++-.+|.+.|+..+|...++++++-+-++...+....-...+.|.|++|.+.+.++.+-
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 44566554 89999999999999999999999988888777777777777788889999999988888653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.6e-05 Score=70.43 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC--CCCCHHHHHHH
Q 005454 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP--HKPNSLIWSTL 498 (696)
Q Consensus 421 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 498 (696)
.|+......+-.++...|+-+....+...... .-..+.......+....+.|++.+|...+.+.. .+||...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45433225555667777777777777766543 334455666668888899999999999998753 35788899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
..+|-+.|+.+.|...+.+++++.|.++.++..|+..|.-.|+.++|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999988776544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.6e-05 Score=69.22 Aligned_cols=157 Identities=10% Similarity=0.103 Sum_probs=117.0
Q ss_pred HhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 005454 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444 (696)
Q Consensus 365 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 444 (696)
+-.|.+.|+++.+....+.+..+. ..+...++.++++..+++.++.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 446788888877655554332221 01223567788888888887753 556678888888999999999999
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHH-hccCC--HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005454 445 NHFDSISAVHGITPSLDHYACMINLL-GRSSD--VDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLF 519 (696)
Q Consensus 445 ~~~~~m~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (696)
..|++..+. .+.+...+..+..++ .+.|+ .++|.+++++.. ..| +..++..+...+...|++++|...+++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988752 234577888888864 67777 599999998754 345 56688889999999999999999999999
Q ss_pred hcCCCCCchHHHH
Q 005454 520 ELEPINAGPYIML 532 (696)
Q Consensus 520 ~~~p~~~~~~~~l 532 (696)
++.|++..-+..+
T Consensus 172 ~l~~~~~~r~~~i 184 (198)
T PRK10370 172 DLNSPRVNRTQLV 184 (198)
T ss_pred hhCCCCccHHHHH
Confidence 9998877655433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.1e-05 Score=83.46 Aligned_cols=141 Identities=13% Similarity=0.082 Sum_probs=116.0
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHH
Q 005454 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465 (696)
Q Consensus 387 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 465 (696)
.++..+-.|.....+.|..++|+.+++...+ +.||. .....+..++.+.+.+++|....++... .-+-+......
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 3577788888899999999999999999998 67886 4667777889999999999999998875 33334677788
Q ss_pred HHHHHhccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 466 MINLLGRSSDVDKAVDLIKSLP-HKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
+..++...|++++|.++|++.. ..|+ ..+|.++..++...|+.++|...|+++++...+....|..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 8899999999999999999865 3454 6689999999999999999999999999987555454443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.3e-05 Score=84.65 Aligned_cols=208 Identities=18% Similarity=0.226 Sum_probs=164.7
Q ss_pred hhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCCC--------CcchHHHHHHHHHccCChhHHHHHHhcCCCC
Q 005454 48 HMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR--------DIISWNALLSAHARSGSVQDLRALFDKMPIR 119 (696)
Q Consensus 48 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 119 (696)
+.+.+.+.|.....|-..+......+++++|++++++.... -...|.++++.-..-|.-+...++|++..+-
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY 1526 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh
Confidence 34445555555588888888889999999999999987653 3457888888888888888888999888653
Q ss_pred -C-cchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CchhHHHH
Q 005454 120 -D-SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG-GNVFVRNA 196 (696)
Q Consensus 120 -~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~ 196 (696)
| ...|..|...|.+.+.+++|-++|+.|.+. .......|...+..+.+..+-+.|..++..+++.-++ -.......
T Consensus 1527 cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1527 CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 2 346888899999999999999999999864 3345567888888888888888999999888876433 13455666
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC
Q 005454 197 LTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256 (696)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 256 (696)
.+.+-.++|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 77778899999999999988875 3456899999999999999999999999988877654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0028 Score=60.75 Aligned_cols=303 Identities=13% Similarity=0.087 Sum_probs=185.2
Q ss_pred HHHHHHHHHccCChHHHHHHHccCCCCCcchHHHHH---HHHHccCChhHHHHHHhcCCCCCcchHHHHH---HHHHhCC
Q 005454 62 HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALL---SAHARSGSVQDLRALFDKMPIRDSVSYNTAI---AGFANKG 135 (696)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g 135 (696)
.--|-+.+...|.+..|..-|....+-|+..|-++- ..|...|+-..|+.-|++..+.-...+.+-| ..+.+.|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 344667777888888898888888888877776654 4677778777777777666532222223222 3567888
Q ss_pred ChhHHHHHHHHhHHCCCCCCcch----------------HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 005454 136 FSREALQVFSRMQKDRFEPTDYT----------------HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199 (696)
Q Consensus 136 ~~~~A~~l~~~m~~~g~~p~~~t----------------~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 199 (696)
.+++|..=|+...+. .|+..+ ....+..+...||...+......+++.. +.|...+..-..
T Consensus 121 ele~A~~DF~~vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cHHHHHHHHHHHHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 889998888888765 332221 1122333444556666666666665543 345566666666
Q ss_pred HHHcCCCHHHHHHHHHhc---CCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 005454 200 MYAKGGEIDKARWLFDRM---NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA 276 (696)
Q Consensus 200 ~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 276 (696)
+|...|++..|+.-+... .+.++.++--+-..+...|+.+.++..+++-.. +.||....-.. |-+ +.+.
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~---YKk---lkKv 269 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPF---YKK---LKKV 269 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHH---HHH---HHHH
Confidence 666666666665544333 234555555555566666666666666665554 23554332211 111 1111
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccch---HHHHHHHHhhcCchhHHHHHHHHHHhC
Q 005454 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI---SSVVSSCAKLASLYHGQVVHGKAVVLG 353 (696)
Q Consensus 277 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~ 353 (696)
.+.++. +......++|.++++..+...+.......+++ ..+-.++..-+.+.+|++.-.+++...
T Consensus 270 ~K~les------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d 337 (504)
T KOG0624|consen 270 VKSLES------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID 337 (504)
T ss_pred HHHHHH------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC
Confidence 111111 12345677888888888887765433233333 334455667788888888888887754
Q ss_pred CCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCC
Q 005454 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388 (696)
Q Consensus 354 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 388 (696)
. .|+.++.--..+|.-...+|+|+.-|+...+.|
T Consensus 338 ~-~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 338 P-DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred c-hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 3 257788778888999999999999998876543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.7e-05 Score=72.06 Aligned_cols=180 Identities=10% Similarity=-0.026 Sum_probs=125.6
Q ss_pred ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCC--chHHHHHHHhhHHhcCChHHHHHHHhcCCC--C-Cch---HHHH
Q 005454 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD--DLLVSSALIDMYCKCGVTDDAWTVFNMMPT--R-NVV---SWNS 394 (696)
Q Consensus 323 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~---~~~~ 394 (696)
...+......+...|+++.|...+..+.+..... ....+..+...|.+.|++++|...|+.+.+ | +.. ++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 3456667778889999999999999998876432 124667788999999999999999998763 2 222 4566
Q ss_pred HHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHH
Q 005454 395 MINGYAQN--------GQDLEALALYDKLLQENLKPDSF-TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465 (696)
Q Consensus 395 li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 465 (696)
+..++... |+.++|.+.|+++... .|+.. ....+... .. . .... ......
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~---------~~~~~~ 171 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRL---------AGKELY 171 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHH---------HHHHHH
Confidence 66666654 7889999999999884 56543 22211111 00 0 0000 011225
Q ss_pred HHHHHhccCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 005454 466 MINLLGRSSDVDKAVDLIKSLP----HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 523 (696)
+.+.|.+.|++++|...++... ..| ....|..+..++...|++++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6677889999999998887642 233 345888999999999999999998888766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00024 Score=78.30 Aligned_cols=142 Identities=11% Similarity=0.043 Sum_probs=114.5
Q ss_pred CCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC--C-CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHH
Q 005454 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--R-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF-TFVS 429 (696)
Q Consensus 354 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ 429 (696)
...+...+..|.......|..++|..+++...+ | +...+..++.++.+.+++++|+..+++... ..|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 445688888999999999999999999998763 4 455788899999999999999999999998 467765 4555
Q ss_pred HHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHH
Q 005454 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLL 499 (696)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll 499 (696)
+..++.+.|.+++|..+|+++.. ..+-+...+..+..++.+.|+.++|...|++... .|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 56678899999999999999986 2333478888999999999999999999988532 34455555544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.5e-06 Score=52.86 Aligned_cols=35 Identities=40% Similarity=0.636 Sum_probs=32.4
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCc
Q 005454 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD 156 (696)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 156 (696)
++||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.8e-05 Score=67.70 Aligned_cols=96 Identities=22% Similarity=0.265 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
......++..+...|++++|.+.++.... .| +...|..+...+...|+++.|...++++++.+|.++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 34555667777778888888888776422 34 56688888888888999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhhhC
Q 005454 538 ACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~~ 555 (696)
..|++++|.+.+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999877663
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00024 Score=65.85 Aligned_cols=151 Identities=15% Similarity=0.105 Sum_probs=76.2
Q ss_pred HHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 005454 362 SALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438 (696)
Q Consensus 362 ~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 438 (696)
..+-..+...|+-+.+..+..... ..|....+..+....+.|++.+|+..|++..... +||..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 344445555555555555555433 2233344445555666666666666666665532 444555655556666666
Q ss_pred cHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHH
Q 005454 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK--PNSLIWSTLLSVCAMKGDIKHGEMAA 515 (696)
Q Consensus 439 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~ 515 (696)
++++|..-|.+..+- ..-+...++.|.-.|.-.|+++.|..++...... .|..+-..|.-+....|++++|+.+.
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666666655555431 1122334444544555555555555555443221 13444444444455555555555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.027 Score=61.21 Aligned_cols=52 Identities=8% Similarity=0.049 Sum_probs=27.9
Q ss_pred HHhcCCHHHHHHHHHh-c----cCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 005454 267 CFQTGRIDDAGRLFHV-I----KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318 (696)
Q Consensus 267 ~~~~g~~~~A~~~~~~-~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 318 (696)
+...|..++|..++.. . ..-+...-+--+..+...+++.+..++-.++...|
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 4456667777666621 1 12233333344555566666666666666666543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0015 Score=65.30 Aligned_cols=226 Identities=10% Similarity=0.044 Sum_probs=139.2
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCCccc-hHHHHHHHHhhc-CchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC
Q 005454 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFS-ISSVVSSCAKLA-SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372 (696)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 372 (696)
-..+...++.++|+.++.++++ +.|+..| |..--.++...+ .++++...+..+++.... +..+|+...-.+.+.|
T Consensus 44 ra~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcC
Confidence 3344556677777777777765 3444332 333333344444 457777777777776554 4445555544455555
Q ss_pred Ch--HHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC---Cc----H
Q 005454 373 VT--DDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA---DL----F 440 (696)
Q Consensus 373 ~~--~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---g~----~ 440 (696)
+. +++...++.+. .+|..+|+...-.+...|+++++++.++++++.+ .-|...|+.....+.+. |. .
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccH
Confidence 42 55666666554 4577788888888888899999999999998865 33345555555444443 22 2
Q ss_pred HHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc----CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC--------
Q 005454 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRS----SDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKG-------- 506 (696)
Q Consensus 441 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g-------- 506 (696)
++...+...+.. -.+-+...|+.+..+|... ++..+|.+++.+.. ..| +......|+..+....
T Consensus 200 e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~ 277 (320)
T PLN02789 200 DSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRD 277 (320)
T ss_pred HHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhh
Confidence 456777766654 2334567788787777763 44566877776643 244 4557777888776532
Q ss_pred ----------ChHHHHHHHHHHHhcCCCCC
Q 005454 507 ----------DIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 507 ----------~~~~a~~~~~~~~~~~p~~~ 526 (696)
..++|..+++.+-+.||-..
T Consensus 278 ~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~ 307 (320)
T PLN02789 278 TVDTLAEELSDSTLAQAVCSELEVADPMRR 307 (320)
T ss_pred hhhccccccccHHHHHHHHHHHHhhCcHHH
Confidence 23567777777765666433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00066 Score=75.64 Aligned_cols=168 Identities=15% Similarity=0.159 Sum_probs=97.6
Q ss_pred CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHH-HHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHH
Q 005454 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS-NILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298 (696)
Q Consensus 220 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 298 (696)
.+...|..|+..|...+++++|.++.+...+. .|+...+- .+...+...++.+++..+ .++...
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~ 93 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSF 93 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhc
Confidence 45567888888888888888888888866554 45544332 222244455554444322 233333
Q ss_pred HhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHH
Q 005454 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378 (696)
Q Consensus 299 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 378 (696)
....++.-...+...|.. ..-+...+..+..+|.+.|+.+++..+++++++..+ .|+.+.|.+...|+.. +++.|.
T Consensus 94 ~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 94 SQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHH
Confidence 344444333333444443 222333556666666677777777777777777663 3666666666666666 666666
Q ss_pred HHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005454 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 379 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
.++.+. +..|...+++.++.++|.++..
T Consensus 170 ~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 170 TYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHH-----------HHHHHhhhcchHHHHHHHHHHh
Confidence 665542 2335555666666777766666
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.9e-06 Score=51.70 Aligned_cols=35 Identities=34% Similarity=0.756 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 424 (696)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.034 Score=60.49 Aligned_cols=159 Identities=11% Similarity=0.016 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDL---EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 467 (696)
+-+.|+..+-+.++.. +|+-+++.-.... +-|..+-..++..|+-.|-+..|.+.|..+--+ .+.-|...|- +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HH
Confidence 3466777777777655 4555555544432 344556667778888888888888888877543 5555544332 23
Q ss_pred HHHhccCCHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CCchHHHHHHHHhhcC
Q 005454 468 NLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI----NAGPYIMLSNMYAACG 540 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g 540 (696)
..+...|++..+...++.... ..-..+-..+..| .++|.+....+...---.+.-. -..+=..........+
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445556677766666554211 0001111222223 3456655544433221122211 1122345666777888
Q ss_pred ChhHHHHHHHHhh
Q 005454 541 RWEDVASIRSSMK 553 (696)
Q Consensus 541 ~~~~A~~~~~~m~ 553 (696)
+.++-.+.+..|+
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 8888888887776
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00071 Score=68.22 Aligned_cols=145 Identities=17% Similarity=0.177 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHH
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL-SACLHADLFERGQNHFDSISAVHGITPS-LDHYACMI 467 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 467 (696)
..+....-.+...|+.++|+..++.++.. .||...|..+. ..+...++.++|.+.++.+.. ..|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHH
Confidence 34444445566779999999999998884 67766665554 578889999999999999875 3566 55666788
Q ss_pred HHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHH
Q 005454 468 NLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 545 (696)
++|.+.|++.+|..+++.... +-|+..|..|..+|...|+..++... .+..|+..|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHH
Confidence 999999999999999987543 34677999999999999998777654 45668889999999
Q ss_pred HHHHHHhhhCC
Q 005454 546 ASIRSSMKSKN 556 (696)
Q Consensus 546 ~~~~~~m~~~~ 556 (696)
.......+++.
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 99998887754
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0021 Score=59.65 Aligned_cols=115 Identities=12% Similarity=0.171 Sum_probs=77.0
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH----HHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCh
Q 005454 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMIN----LLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDI 508 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~ 508 (696)
.+..+++-|.+.++.|.+- .+-.+.+.|.. ...-.+++.+|.-+|+++.. .|+..+.+..+.++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH
Confidence 3444555555555555431 12223333333 33334567777777777755 47778888888888889999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHH-HHHHhh
Q 005454 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS-IRSSMK 553 (696)
Q Consensus 509 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~ 553 (696)
++|+.+++.++..++.+|.+...++-+-...|+-.++.. .+.+.+
T Consensus 224 eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 999999999999999999988888888888887766543 444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00064 Score=68.55 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=104.5
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHH
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKPN-SLIWSTLLSVCAMKGDIKH 510 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~ 510 (696)
.....|.+++|+..+..+.. ..+-|........+.+.+.++.++|.+.++++. ..|+ ...+-.+..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34567899999999999886 444556666778899999999999999998864 3576 6688889999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
|...++....-+|+++..|..|+.+|...|+..+|..-+.++..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877643
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.3e-05 Score=50.34 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=30.1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC
Q 005454 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154 (696)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 154 (696)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999988887
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00016 Score=73.60 Aligned_cols=120 Identities=13% Similarity=0.168 Sum_probs=89.7
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 005454 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKG 506 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g 506 (696)
.|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++.. ..| +...+.....-|...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 3444555566677777777776653 244 33345666666666777777766532 234 4556666667788999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
+++.|..+++++.++.|.+..+|..|+.+|...|++++|+-.++.+.
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999998885
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00023 Score=61.85 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=86.0
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CC
Q 005454 411 LYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PH 488 (696)
Q Consensus 411 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 488 (696)
+|++.+. ..|+. .....+...+...|++++|.+.|+.+... -+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 44543 44555666777888899999888888752 2446677888888888889999998888764 23
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch
Q 005454 489 KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528 (696)
Q Consensus 489 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 528 (696)
.| +...+..+...+...|+.+.|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 34 56678888888999999999999999999999987653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=2e-05 Score=49.48 Aligned_cols=34 Identities=29% Similarity=0.669 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 005454 222 LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255 (696)
Q Consensus 222 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 255 (696)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00041 Score=70.69 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=93.6
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCc
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 439 (696)
...+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.++.. +-|...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 334556666677888888888888887766667777888888888888888888888642 3344445545556778888
Q ss_pred HHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCCCC
Q 005454 440 FERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKSLPHK 489 (696)
Q Consensus 440 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 489 (696)
++.|..+.+++.. ..|+ ..+|..|+..|...|++++|+-.++.+|..
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8888888888874 3444 568888888888888888888888887754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0031 Score=58.09 Aligned_cols=164 Identities=16% Similarity=0.160 Sum_probs=111.7
Q ss_pred HHhhHHhcCChHHHHHHHhcCCCCCchHHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcH
Q 005454 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS---MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 440 (696)
+.-+...+|+.+.|...++.+...=+.++.. -..-+-..|++++|+++++.+++.+ +.|.+++..=+-..-..|..
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 3344455666666666666544211111111 1123445788899999999988875 55567776666666667777
Q ss_pred HHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC---ChHHHHHHH
Q 005454 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKG---DIKHGEMAA 515 (696)
Q Consensus 441 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~ 515 (696)
-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++. ..| ++..+..+...+...| +.+.|.+.+
T Consensus 137 l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 788888877776 567888999999999999999999988888753 345 4445566665554443 778899999
Q ss_pred HHHHhcCCCCCchHH
Q 005454 516 RHLFELEPINAGPYI 530 (696)
Q Consensus 516 ~~~~~~~p~~~~~~~ 530 (696)
.+++++.|.+...+.
T Consensus 215 ~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 215 ERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHhChHhHHHHH
Confidence 999999986654443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00046 Score=60.69 Aligned_cols=114 Identities=13% Similarity=0.145 Sum_probs=58.5
Q ss_pred CCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHhcCChHH
Q 005454 437 ADLFERGQNHFDSISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSLPHK-PNS----LIWSTLLSVCAMKGDIKH 510 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~----~~~~~ll~~~~~~g~~~~ 510 (696)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.+... ||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4445555555555554322111 0122223445555566666666655553321 222 233444555566666666
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHH
Q 005454 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSS 551 (696)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 551 (696)
|...++.. .-.+-.+..+..++++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22233445566777777777777777777654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0023 Score=59.45 Aligned_cols=188 Identities=12% Similarity=0.084 Sum_probs=129.2
Q ss_pred HHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHH
Q 005454 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL-ALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441 (696)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 441 (696)
-+...|...|.......-...-..+.......+.......++-++-+ ++.+.+.......|......-...|.+.|+++
T Consensus 46 y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~d 125 (299)
T KOG3081|consen 46 YMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFD 125 (299)
T ss_pred HHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChH
Confidence 34455556665543333222222233333333333333344444443 44555555544445444444455699999999
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHH
Q 005454 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHGEMAARH 517 (696)
Q Consensus 442 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~ 517 (696)
+|.+..+.. -+.+....=+..+.+..+++-|.+.++.|..-.+..+.+.|..++.+ .+.+..|.-+|+.
T Consensus 126 eAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE 198 (299)
T KOG3081|consen 126 EALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEE 198 (299)
T ss_pred HHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 999987652 24455555577788999999999999999876777788888877764 3468899999999
Q ss_pred HHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 518 LFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 518 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
+-+.-|+++...+..+.+....|+|++|..+++...++..
T Consensus 199 ~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 199 LSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9998888999999999999999999999999999887554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0052 Score=68.76 Aligned_cols=232 Identities=11% Similarity=0.123 Sum_probs=111.0
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHH-HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 005454 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN-ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198 (696)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 198 (696)
+...|..|+..|...+++++|.++.+...+. .|+...+..... .+.+.++...+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 3445666666666666666666666644433 444443322222 22233332222211 222
Q ss_pred HHHHcCCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 005454 199 DMYAKGGEIDKARWLFDRMNN--RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA 276 (696)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 276 (696)
+......++.....+...|.. .+..++-.+..+|-+.|+.++|..+++++.+.. +-|....+.+.-.|+.. ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 222233333222222222222 122345556666666666666666666666654 33455556666666666 66666
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHh-CCC
Q 005454 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL-GVD 355 (696)
Q Consensus 277 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~ 355 (696)
.+++.+. +..|....++.++.+++.++... .|+...+ -.++.+.+... +..
T Consensus 169 ~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 169 ITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFT 220 (906)
T ss_pred HHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccc
Confidence 6655443 22355566677777777776653 2322211 11111122111 222
Q ss_pred CchHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHH
Q 005454 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYA 400 (696)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 400 (696)
--..++-.|-..|-+..+++++..+|+.+.+ .|.....-++.+|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2233444455556666666666666665542 34444555555554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=7.1e-05 Score=56.15 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC-ChhHHHHHHHHhhh
Q 005454 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG-RWEDVASIRSSMKS 554 (696)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 554 (696)
+..+|..+...+...|++++|+..|+++++++|.++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46688899999999999999999999999999999999999999999999 79999999987754
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00026 Score=56.66 Aligned_cols=92 Identities=21% Similarity=0.241 Sum_probs=74.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 463 YACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
+..+...+...|++++|.+.++... ..| +...+..+...+...|+++.|...++++++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4456667777888888888887643 233 34577778888888899999999999999999988888999999999999
Q ss_pred ChhHHHHHHHHhhh
Q 005454 541 RWEDVASIRSSMKS 554 (696)
Q Consensus 541 ~~~~A~~~~~~m~~ 554 (696)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998887754
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.081 Score=54.42 Aligned_cols=442 Identities=13% Similarity=0.116 Sum_probs=242.5
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 005454 89 DIISWNALLSAHARSGSVQDLRALFDKMPI--R-DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165 (696)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 165 (696)
|+.+|+.||.-+... .+++++..++++.. | ....|..-|..-....+++....+|.+....-.. ...|..-|.-
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lYl~Y 95 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLYLSY 95 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHHHHH
Confidence 888999999887766 89999999999864 3 4567999999999999999999999998865333 3344444433
Q ss_pred HHc-cCChHH----HHHHHHHH-HHcCCCCc-hhHHHHHHHHH---------HcCCCHHHHHHHHHhcCCCChh----HH
Q 005454 166 CAQ-LLDLRR----GKQIHGKI-VVGNLGGN-VFVRNALTDMY---------AKGGEIDKARWLFDRMNNRNLV----SW 225 (696)
Q Consensus 166 ~~~-~~~~~~----a~~~~~~~-~~~g~~~~-~~~~~~li~~~---------~~~g~~~~A~~~~~~~~~~~~~----~~ 225 (696)
-.+ .++... ..+.|+.. .+.|+++- -..|+..+..+ ....+++..++++.++...... .|
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 322 222222 22333333 34454432 33455555433 3344566677777777652222 34
Q ss_pred HHHHHH-------H------HhCCCchHHHHHHHHHHH--cCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhH
Q 005454 226 NLMISG-------Y------LKNGQPKKCIDLFQEMQL--LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290 (696)
Q Consensus 226 ~~li~~-------~------~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 290 (696)
+-...- . -+...+..|.++++++.. .|..-+..++ -..|-.++..+ +..
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~v-------p~~~T~~e~~q---------v~~ 239 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAV-------PPKGTKDEIQQ---------VEL 239 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCC-------CCCCChHHHHH---------HHH
Confidence 422110 0 011223334444444322 1211111110 00000011000 011
Q ss_pred HHHHHHHHHhcCCh--------hHHHHHHHHh-ccCCCCCCccc-hHHHH----HHHHhhcCc-------hhHHHHHHHH
Q 005454 291 WTTMIVGYTQNGKE--------EDALILFNEM-LSEDVRPDKFS-ISSVV----SSCAKLASL-------YHGQVVHGKA 349 (696)
Q Consensus 291 ~~~li~~~~~~g~~--------~~A~~~~~~m-~~~g~~p~~~t-~~~ll----~~~~~~~~~-------~~a~~~~~~~ 349 (696)
|-.+|..=..++-- ....-.+++. +-.+..|+..- +...+ ..+...|+. +++..+++..
T Consensus 240 W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~ 319 (656)
T KOG1914|consen 240 WKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERA 319 (656)
T ss_pred HHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHH
Confidence 22222211111000 0000011111 11112222110 00000 112222322 3445555555
Q ss_pred HHhCCCCchHHHHHHHhhHHhcC---ChHHHHHHHhcCC----CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005454 350 VVLGVDDDLLVSSALIDMYCKCG---VTDDAWTVFNMMP----TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422 (696)
Q Consensus 350 ~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 422 (696)
+..-...+..+|.++.+.--..- ..+.....+++.. ..-..+|-.++..-.+....+.|..+|.+..+.+..+
T Consensus 320 I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~ 399 (656)
T KOG1914|consen 320 IEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR 399 (656)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc
Confidence 54433334455554443221111 1334444444443 1223467777777778888999999999999988777
Q ss_pred -CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC---CCC--HHHHH
Q 005454 423 -DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPN--SLIWS 496 (696)
Q Consensus 423 -~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~p~--~~~~~ 496 (696)
+.....+++.-++ +++..-|.++|+.-.+.+| .+...-.+.++-+...++-..|..+|++... .|| ..+|.
T Consensus 400 hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~ 476 (656)
T KOG1914|consen 400 HHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWD 476 (656)
T ss_pred chhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHH
Confidence 5566677776554 4778899999998777543 4445567788999999999999999988643 233 45999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCC----chHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 497 TLLSVCAMKGDIKHGEMAARHLFELEPINA----GPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
.++.--..-||...+.++-++....-|.+. ..-..+.+-|.-.+.+..-..-++.|
T Consensus 477 r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 477 RMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999988999999999999998887766322 23445666777777766555555544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.7e-05 Score=46.48 Aligned_cols=31 Identities=39% Similarity=0.697 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 005454 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRF 152 (696)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 152 (696)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00042 Score=70.92 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=48.3
Q ss_pred HhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHH
Q 005454 470 LGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547 (696)
Q Consensus 470 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 547 (696)
+...|++++|++.+++.. ..| +...|..+..++...|++++|...++++++++|.++.+|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 344555555555554432 222 334555555556666666666666666666666666666666666666666666666
Q ss_pred HHHHhhh
Q 005454 548 IRSSMKS 554 (696)
Q Consensus 548 ~~~~m~~ 554 (696)
.+++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 6655544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0027 Score=55.81 Aligned_cols=124 Identities=16% Similarity=0.257 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh--HHHHH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDS----FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL--DHYAC 465 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ 465 (696)
|..++..+ ..++...+...++.+.+.. |+. .....+...+...|++++|...|+.+... ...|.. ...-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 44445444 3677777877888887753 332 23333445677788888888888888763 322222 23445
Q ss_pred HHHHHhccCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005454 466 MINLLGRSSDVDKAVDLIKSLPHK-PNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (696)
+...+...|++++|+..++..+.. .....+..+...+...|+.++|...|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 677788888888888888775443 344566677778888888888888887753
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.061 Score=53.72 Aligned_cols=107 Identities=14% Similarity=0.096 Sum_probs=78.1
Q ss_pred HHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHH
Q 005454 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442 (696)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 442 (696)
..+.-+...|+...|.++-.+..-|+...|-..+.+|+..++|++-.++... +-.++-|..++.+|...|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3345556678888888888888888888888888888888888877665432 2234778888888888888888
Q ss_pred HHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC
Q 005454 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 443 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 486 (696)
|..+...+. +..-+.+|.++|.+.+|.+.--+.
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888776531 134577888888888887665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.7e-05 Score=59.71 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHH
Q 005454 474 SDVDKAVDLIKSLPH-KP---NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549 (696)
Q Consensus 474 g~~~~A~~~~~~~~~-~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 549 (696)
|++++|+.+++++.. .| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445555555544321 12 334555566777777777777777777 6666666666667778888888888888777
Q ss_pred HH
Q 005454 550 SS 551 (696)
Q Consensus 550 ~~ 551 (696)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0034 Score=57.89 Aligned_cols=161 Identities=12% Similarity=0.143 Sum_probs=125.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS-ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 470 (696)
|..++-+....|+.+-|...++++... + |.+.-...+-. -+...|++++|+++++++.++ -+.|..+|-.-+-++
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 444555667789999999999998885 2 55432222221 245678999999999999874 355677787777788
Q ss_pred hccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC---ChhHH
Q 005454 471 GRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG---RWEDV 545 (696)
Q Consensus 471 ~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 545 (696)
-..|+--+|++-+..... ..|...|.-|...|...|+++.|.-.+++++=..|-++..+..+++++.-.| +.+-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888888888877765432 3588899999999999999999999999999999999999999999988777 55667
Q ss_pred HHHHHHhhhCC
Q 005454 546 ASIRSSMKSKN 556 (696)
Q Consensus 546 ~~~~~~m~~~~ 556 (696)
.+++.+..+-.
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 78887776543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00012 Score=54.08 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=48.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 498 LLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
+...+...|++++|...++++++.+|.++.++..++.++...|++++|..++++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556778888899999999999988888888889999999999999999888887653
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.4e-05 Score=45.89 Aligned_cols=31 Identities=42% Similarity=0.763 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 005454 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253 (696)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 253 (696)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0017 Score=56.39 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=81.7
Q ss_pred CCCCCh-HHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 455 GITPSL-DHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 455 ~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
|++++. +..-....-+...|++++|..+|+-+.. .-+..-|..|..+|...++++.|...|..+..++++||.++..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 555442 2222334445689999999999986432 3456678899999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHhhh
Q 005454 532 LSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 532 l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+.+|...|+.+.|...|+...+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999987765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00074 Score=57.00 Aligned_cols=92 Identities=12% Similarity=0.073 Sum_probs=50.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CchHHHHHHH
Q 005454 464 ACMINLLGRSSDVDKAVDLIKSLPH-KPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN---AGPYIMLSNM 535 (696)
Q Consensus 464 ~~li~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 535 (696)
-.++..+.+.|++++|.+.++.+.. .|+ ...+..+..++...|+++.|...++.++...|.+ +..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3444445555555555555544321 122 2244445555666666666666666666665553 3345566666
Q ss_pred HhhcCChhHHHHHHHHhhhC
Q 005454 536 YAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 536 ~~~~g~~~~A~~~~~~m~~~ 555 (696)
|...|++++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 66666666666666666543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00098 Score=63.11 Aligned_cols=104 Identities=14% Similarity=0.148 Sum_probs=73.3
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCHH-HHHHHHHHHHhcCChHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKS-LPHKPNSL-IWSTLLSVCAMKGDIKH 510 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~-~~~~ll~~~~~~g~~~~ 510 (696)
..+.+++.+|+..|..++. +.| |...|..-..+|.+.|.++.|++-.+. +...|... +|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3456777777777777764 344 345555567777788888777776665 34456544 88888889999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 511 GEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
|++.|+++++++|++......|-.+--+.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 999999999999988866666654443333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.09 Score=52.09 Aligned_cols=96 Identities=14% Similarity=0.196 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhcCCcHHHHHHHHHHhHHh-hCCCCC--hHH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLK-----PDSF-TFVSVLSACLHADLFERGQNHFDSISAV-HGITPS--LDH 462 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~ 462 (696)
+..+...+.+.|++++|+++|++....... ++.. .|...+-++...|++..|.+.|+..... .++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 344666777888888888888887664322 1221 2333344556678888888888876532 122222 234
Q ss_pred HHHHHHHHh--ccCCHHHHHHHHHhCC
Q 005454 463 YACMINLLG--RSSDVDKAVDLIKSLP 487 (696)
Q Consensus 463 ~~~li~~~~--~~g~~~~A~~~~~~~~ 487 (696)
...|++++- ....+++|..-|+.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 455666663 3446677777777664
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00026 Score=52.83 Aligned_cols=52 Identities=13% Similarity=0.291 Sum_probs=45.7
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
...|++++|...++++++.+|+++.++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999987765
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0016 Score=54.90 Aligned_cols=103 Identities=9% Similarity=0.016 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCC----HHHHHHHHHH
Q 005454 428 VSVLSACLHADLFERGQNHFDSISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPN----SLIWSTLLSV 501 (696)
Q Consensus 428 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~ll~~ 501 (696)
..+...+...|++++|...|..+.+.+.-.| ....+..+..++.+.|++++|.+.++.+.. .|+ ..++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3444445555566666666655554321111 123444466666666666666666665322 222 3456777777
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCchHH
Q 005454 502 CAMKGDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
+...|+.+.|...++++++..|+++.+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 88888888888888888888887765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0021 Score=63.29 Aligned_cols=262 Identities=11% Similarity=0.069 Sum_probs=154.8
Q ss_pred HHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcCchh
Q 005454 266 ACFQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLASLYH 341 (696)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~ 341 (696)
.+.+..++.+|+..+.... ..+..-|..-+..+..-|++++|+--.+.-.+ ++|. ..+..-.-+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHHHH
Confidence 3455566666666665443 23444566666666666666666655554443 2222 1233333444444444444
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC-----CCCchHHHHH-HHHHHHcCChHHHHHHHHHH
Q 005454 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-----TRNVVSWNSM-INGYAQNGQDLEALALYDKL 415 (696)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m 415 (696)
|.+.++.- ..+ ....|...++... +|...+|-.+ ..++...|++++|...--..
T Consensus 136 A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 44444310 000 0111112222221 1222334333 23455677777777766665
Q ss_pred HHCCCCCCHHHHHHHHH--HHhcCCcHHHHHHHHHHhHHhhCCCCChHH-------------HHHHHHHHhccCCHHHHH
Q 005454 416 LQENLKPDSFTFVSVLS--ACLHADLFERGQNHFDSISAVHGITPSLDH-------------YACMINLLGRSSDVDKAV 480 (696)
Q Consensus 416 ~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-------------~~~li~~~~~~g~~~~A~ 480 (696)
++. .++. .+..+++ ++...++.+.|...|++..+ +.|+-.. +..=.+-..+.|++.+|.
T Consensus 196 lkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 196 LKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred Hhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 552 2222 2222332 23356677777777776652 3344221 112234567899999999
Q ss_pred HHHHh-CCCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 481 DLIKS-LPHK-----PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 481 ~~~~~-~~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+.+.+ +... |+...|.....+..+.|+.++|..-.+.+++++|.-..+|..-++++...++|++|.+-+++..+
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99976 4443 45566777777788999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 005454 555 K 555 (696)
Q Consensus 555 ~ 555 (696)
.
T Consensus 350 ~ 350 (486)
T KOG0550|consen 350 L 350 (486)
T ss_pred h
Confidence 3
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0038 Score=61.59 Aligned_cols=134 Identities=13% Similarity=0.204 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA-CLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998643 3334445444443 33457777799999999985 4567788899999
Q ss_pred HHhccCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 469 LLGRSSDVDKAVDLIKSLPH-KPNS----LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 469 ~~~~~g~~~~A~~~~~~~~~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
.+.+.|+.+.|..+|++... -|.. .+|...+.--.+.|+.+....+.+++.+.-|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999998543 2333 4999999999999999999999999999988743
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.027 Score=58.76 Aligned_cols=201 Identities=14% Similarity=0.178 Sum_probs=110.6
Q ss_pred HHHHHHHhCCC--chHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCCh
Q 005454 227 LMISGYLKNGQ--PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304 (696)
Q Consensus 227 ~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 304 (696)
..-.+|.+..+ +-+.+--+++|++.|-.|+..... ..++-.|.+.+|-++|. ++|..
T Consensus 603 ~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk------------------~~G~e 661 (1081)
T KOG1538|consen 603 TARKAYIRVRDLRYLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFK------------------RSGHE 661 (1081)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHH------------------HcCch
Confidence 33344444333 233444567788888888876543 34667788888877764 45666
Q ss_pred hHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcC
Q 005454 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384 (696)
Q Consensus 305 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 384 (696)
..|+++|.+|.-- -..+-+...|..++-+.+...-.+- .-+..--.+...++...|+.++|..+.
T Consensus 662 nRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~--- 726 (1081)
T KOG1538|consen 662 NRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC--- 726 (1081)
T ss_pred hhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh---
Confidence 7777777666421 1122233334433333322221110 000001123345555666666665542
Q ss_pred CCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHH
Q 005454 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464 (696)
Q Consensus 385 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 464 (696)
..+|-.+-+.++-+++-. .+..+...+..-+.+...+.-|-++|.+|-. ..
T Consensus 727 ---------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~k 777 (1081)
T KOG1538|consen 727 ---------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LK 777 (1081)
T ss_pred ---------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HH
Confidence 344545555555444422 2334444454455566677778888877743 23
Q ss_pred HHHHHHhccCCHHHHHHHHHhCCC-CCCH
Q 005454 465 CMINLLGRSSDVDKAVDLIKSLPH-KPNS 492 (696)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~~~~-~p~~ 492 (696)
.++++....+++.+|..+-++.|. .||+
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccccccc
Confidence 577888889999999988888775 3443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.18 Score=50.96 Aligned_cols=134 Identities=14% Similarity=0.111 Sum_probs=81.4
Q ss_pred HccCChHHHHHHHccCCCC---C------cchHHHHHHHHHccCChhHHHHHHhcCCCC-CcchHHHHHHH--HHhCCCh
Q 005454 70 AKSGKLFYARDLFDKMPLR---D------IISWNALLSAHARSGSVQDLRALFDKMPIR-DSVSYNTAIAG--FANKGFS 137 (696)
Q Consensus 70 ~~~g~~~~a~~~~~~~~~~---~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~--~~~~g~~ 137 (696)
-+.+++.+|.++|.++... + .+.-+.++++|.-. +++..........+. ....|-.+..+ +.+.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 4677888888888877642 1 22334567777543 344444444433321 13345555554 3567888
Q ss_pred hHHHHHHHHhHHC--CCCC------------CcchHHHHHHHHHccCChHHHHHHHHHHHHcCCC----CchhHHHHHHH
Q 005454 138 REALQVFSRMQKD--RFEP------------TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG----GNVFVRNALTD 199 (696)
Q Consensus 138 ~~A~~l~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~ 199 (696)
.+|++.+..-... +-.| |-.-=...+..+...|.+.+|+.++..+...=++ .+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 8888888766543 2221 1111234455667889999999888887765444 78888888777
Q ss_pred HHHcC
Q 005454 200 MYAKG 204 (696)
Q Consensus 200 ~~~~~ 204 (696)
++++.
T Consensus 176 mlsrS 180 (549)
T PF07079_consen 176 MLSRS 180 (549)
T ss_pred HHhHH
Confidence 77654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0057 Score=65.46 Aligned_cols=139 Identities=17% Similarity=0.127 Sum_probs=73.0
Q ss_pred CCCCchHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC
Q 005454 385 PTRNVVSWNSMINGYAQN-----GQDLEALALYDKLLQENLKPDSF-TFVSVLSACLHADLFERGQNHFDSISAVHGITP 458 (696)
Q Consensus 385 ~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 458 (696)
...|...|...+.+.... +...+|..+|++.++ ..|+.. .+..+..++... ++..|
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~ 394 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQP 394 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCC
Confidence 345677787777775432 236688888888888 567753 333322221110 01111
Q ss_pred ChHHHHHHHHHHhccCCHHHHHHHHHh---CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 459 SLDHYACMINLLGRSSDVDKAVDLIKS---LP-HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~~~~~---~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
.. .+++..+.+..++ ++ ...+..+|.++.-.....|++++|...++++++++| +..+|..++.
T Consensus 395 ~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~ 461 (517)
T PRK10153 395 LD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGK 461 (517)
T ss_pred cc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 00 0112222222222 11 122334555554444555666666666666666666 4556666666
Q ss_pred HHhhcCChhHHHHHHHHhhh
Q 005454 535 MYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 535 ~~~~~g~~~~A~~~~~~m~~ 554 (696)
+|...|+.++|...+++...
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 66666666666666665544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0015 Score=59.34 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCC-CCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLP-HKP---N-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
..+..+...+.+.|++++|...+++.. ..| + ...|..+...+...|+++.|...++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345566666667777777777776542 112 2 35778888888899999999999999999999988888888999
Q ss_pred HhhcCC
Q 005454 536 YAACGR 541 (696)
Q Consensus 536 ~~~~g~ 541 (696)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0011 Score=62.91 Aligned_cols=88 Identities=18% Similarity=0.274 Sum_probs=78.0
Q ss_pred HHHHhccCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhH
Q 005454 467 INLLGRSSDVDKAVDLIKS-LPHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 544 (696)
.+-+.+.+++++|+..+.+ +...| |.+.|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3456778999999999977 44455 677888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 005454 545 VASIRSSMKS 554 (696)
Q Consensus 545 A~~~~~~m~~ 554 (696)
|.+.|++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999987755
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0016 Score=58.97 Aligned_cols=93 Identities=10% Similarity=-0.057 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP-HKPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
...|..++..+...|++++|...+++.. ..|+ ..+|..+...+...|+.++|...+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4556667777778888888888887642 2222 3478889999999999999999999999999999998889998
Q ss_pred HHh-------hcCChhHHHHHHHHh
Q 005454 535 MYA-------ACGRWEDVASIRSSM 552 (696)
Q Consensus 535 ~~~-------~~g~~~~A~~~~~~m 552 (696)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 988 888888776666544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00051 Score=52.10 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=52.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
...+...++++.|.++++++++++|.++..+...+.+|...|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567889999999999999999999999999999999999999999999999887644
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0039 Score=56.64 Aligned_cols=131 Identities=12% Similarity=0.142 Sum_probs=87.6
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHH
Q 005454 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD--SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 465 (696)
....+..+...+...|++++|...|++.++....|+ ...+..+...+.+.|++++|...+.+..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 334566777778888888888888888876432222 356777777788888888888888887752 1223455666
Q ss_pred HHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 005454 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (696)
+..+|...|+...+..-++.. ...+++|...++++++++|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 677777777666554332221 123677888999999988876 5566666665554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0026 Score=65.19 Aligned_cols=104 Identities=11% Similarity=0.046 Sum_probs=64.4
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 511 (696)
+...|++++|++.|.++.+. -+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|+++.|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 33455556666655555541 1223445555556666666666666666553 2233 455677777777888888888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhc
Q 005454 512 EMAARHLFELEPINAGPYIMLSNMYAAC 539 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 539 (696)
...++++++++|.++.....+..+..+.
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888888888877766665554433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00019 Score=44.55 Aligned_cols=33 Identities=33% Similarity=0.560 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCchHHHHHHHHhhcCChhHHHH
Q 005454 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547 (696)
Q Consensus 515 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 547 (696)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0028 Score=50.40 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 451 (696)
|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666665532 1222344444444455555555555555444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0011 Score=48.83 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=48.3
Q ss_pred HHHHHhccCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 466 MINLLGRSSDVDKAVDLIKSLPH-KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
+...+.+.|++++|.+.|+.+.. .|+ ...|..+..++...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45667788888888888887533 464 45888899999999999999999999999999864
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.3 Score=48.88 Aligned_cols=110 Identities=16% Similarity=0.232 Sum_probs=86.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHh
Q 005454 256 DEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335 (696)
Q Consensus 256 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 335 (696)
...+.+..+.-+...|+...|.++-....-|+...|-..+.+|+..++|++-.++-.. +-.+..|..++.+|..
T Consensus 176 ~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 176 VGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred hcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3456677777788899999999999999889999999999999999999987775432 2245888889999999
Q ss_pred hcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHH
Q 005454 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381 (696)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 381 (696)
.|...+|..+...+ .+..-+.+|.++|++.+|.+.-
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 99888887776651 1245678888999888887653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0013 Score=51.55 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=38.3
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHH
Q 005454 402 NGQDLEALALYDKLLQENL-KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKA 479 (696)
Q Consensus 402 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 479 (696)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . ...|. ....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566666666666665321 11233333455566666666666666655 1 11121 12222335555566666666
Q ss_pred HHHHH
Q 005454 480 VDLIK 484 (696)
Q Consensus 480 ~~~~~ 484 (696)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.015 Score=55.72 Aligned_cols=102 Identities=11% Similarity=0.032 Sum_probs=85.5
Q ss_pred CCChHHHHHHHHHHhccCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLP-H-KPNSLIWSTLLSVCAMK---GDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 457 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
+-|.+.|-.|...|.+.|+++.|..-|.+.. . .++...+..+..++... ....++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4567899999999999999999999987643 2 34566777777766543 35679999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHhhhCCCc
Q 005454 532 LSNMYAACGRWEDVASIRSSMKSKNVK 558 (696)
Q Consensus 532 l~~~~~~~g~~~~A~~~~~~m~~~~~~ 558 (696)
|+-.+...|++.+|...|+.|.+....
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999886653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.076 Score=52.62 Aligned_cols=99 Identities=8% Similarity=0.120 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCCcc------chHHHHHHHHhhcCchhHHHHHHHHHHhC--CCCc--hHH
Q 005454 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF------SISSVVSSCAKLASLYHGQVVHGKAVVLG--VDDD--LLV 360 (696)
Q Consensus 291 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~ 360 (696)
+..+...+.+.|++++|+++|++........+.. .+...+-.+...|+...|...++...... +..+ ..+
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 4455667777788888888887776532221111 11222223344556666666666554332 2211 233
Q ss_pred HHHHHhhHHh--cCChHHHHHHHhcCCCCCc
Q 005454 361 SSALIDMYCK--CGVTDDAWTVFNMMPTRNV 389 (696)
Q Consensus 361 ~~~li~~y~~--~g~~~~A~~~~~~~~~~~~ 389 (696)
...|+.+|-. ...++.|..-|+.+.+.|.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 4445555533 3455566666666665544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.02 Score=51.75 Aligned_cols=81 Identities=10% Similarity=0.015 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHH
Q 005454 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD--SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466 (696)
Q Consensus 389 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 466 (696)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|++++|+..++...+. .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34566677777778888888888888876432221 236666777777788888888888777642 12223444444
Q ss_pred HHHHh
Q 005454 467 INLLG 471 (696)
Q Consensus 467 i~~~~ 471 (696)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 44444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.051 Score=47.79 Aligned_cols=131 Identities=12% Similarity=0.119 Sum_probs=100.9
Q ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC------CCCHH
Q 005454 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH------KPNSL 493 (696)
Q Consensus 420 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~p~~~ 493 (696)
..|+..--..|..+....|+..+|...|++... .-+.-|....-.+..+....+++.+|...++.+.. .||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 467776667788888888888888888888776 13445667777788888888888888888877432 2443
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
-..+..++...|..+.|+..|+.++.-.| ++..-...+..+.++|+.++|..-+..+.+
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34566788889999999999999999888 567777888889999999988776655544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.48 Score=47.99 Aligned_cols=428 Identities=11% Similarity=0.089 Sum_probs=207.9
Q ss_pred HHccCChhHHHHHHhcCCCC---C------cchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHH--Hc
Q 005454 100 HARSGSVQDLRALFDKMPIR---D------SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC--AQ 168 (696)
Q Consensus 100 ~~~~g~~~~A~~~f~~~~~~---~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~ 168 (696)
.-+.+++.+|.++|.++-+. + .+.-+-+|++|..++ .+.....+....+. .| ...|..+..++ .+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 35778999999999888632 2 223456777777653 34444444444432 34 45566776664 57
Q ss_pred cCChHHHHHHHHHHHHc--CCC------------CchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--------CChhHHH
Q 005454 169 LLDLRRGKQIHGKIVVG--NLG------------GNVFVRNALTDMYAKGGEIDKARWLFDRMNN--------RNLVSWN 226 (696)
Q Consensus 169 ~~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~ 226 (696)
.+.+..|.+.+..-... +-. +|-..-+..++.+.+.|++.+++.++++|.. -++.+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78888888877766544 221 2333445667788888999999888888754 3667777
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHH---cCCCCCcchHHHHHHHHHhc-CCHHHHHHHHHhccCCChhHHHHHHHHHHh--
Q 005454 227 LMISGYLKNGQPKKCIDLFQEMQL---LGLNPDEVTVSNILGACFQT-GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ-- 300 (696)
Q Consensus 227 ~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-- 300 (696)
.++-.+.+. .|-++.+ ..+-||- | -++-.|.+. ...|. .. ++... |.......++.-..-
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pdy--Y-emilfY~kki~~~d~-~~-Y~k~~-peeeL~s~imqhlfi~p 237 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPDY--Y-EMILFYLKKIHAFDQ-RP-YEKFI-PEEELFSTIMQHLFIVP 237 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChHH--H-HHHHHHHHHHHHHhh-ch-HHhhC-cHHHHHHHHHHHHHhCC
Confidence 755555442 2222211 1222221 1 122222221 11111 00 00000 000001111111100
Q ss_pred cCChhHHHHHHHHhccCCCCCCccch-HHHHHHHHhhcCchhHHHHHHHHHHhCCC----CchHHHHHHHhhHHhcCChH
Q 005454 301 NGKEEDALILFNEMLSEDVRPDKFSI-SSVVSSCAKLASLYHGQVVHGKAVVLGVD----DDLLVSSALIDMYCKCGVTD 375 (696)
Q Consensus 301 ~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~y~~~g~~~ 375 (696)
..+..--++++..-...-+.|+.... ..+...... +.+.+..+-+.+....+. --...+..++....+.++..
T Consensus 238 ~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~ 315 (549)
T PF07079_consen 238 KERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTE 315 (549)
T ss_pred HhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 00111111111111222244442211 111111111 333333333332222111 01234455555566666666
Q ss_pred HHHHHHhcCC--CCCch-------HHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHH---HhcCC
Q 005454 376 DAWTVFNMMP--TRNVV-------SWNSMINGYA----QNGQDLEALALYDKLLQENLKPDSFT-FVSVLSA---CLHAD 438 (696)
Q Consensus 376 ~A~~~~~~~~--~~~~~-------~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a---~~~~g 438 (696)
.|.+.+.-+. +|+.. +-.++-+..+ ..-+..+-+.+|+...... .|..- ...++.+ +-+.|
T Consensus 316 ~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~g 393 (549)
T PF07079_consen 316 EAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEIG 393 (549)
T ss_pred HHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhcC
Confidence 6666655443 22221 0111112222 1122233445555555533 33221 1122221 22333
Q ss_pred -cHHHHHHHHHHhHHhhCCCCChHHHHHHHH-----HHhcc---C---CHHHHHHHHHhCCCCC----CHHHHHHHHHH-
Q 005454 439 -LFERGQNHFDSISAVHGITPSLDHYACMIN-----LLGRS---S---DVDKAVDLIKSLPHKP----NSLIWSTLLSV- 501 (696)
Q Consensus 439 -~~~~a~~~~~~m~~~~~~~p~~~~~~~li~-----~~~~~---g---~~~~A~~~~~~~~~~p----~~~~~~~ll~~- 501 (696)
.-+.|..+++.+.+ +.|.-.-....+. .|..+ . ++-+-..+++..+..| +...-|.|..|
T Consensus 394 ~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 394 QCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred CccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 36777777776654 2222111111121 12111 1 1122334455555543 34455666555
Q ss_pred -HHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 502 -CAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 502 -~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
+..+|++.++.-...-+.+..| ++.+|..++-++....++++|..++..+.
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 4689999999999999999999 89999999999999999999999997653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.027 Score=60.46 Aligned_cols=49 Identities=8% Similarity=0.026 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhc--CCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 508 IKHGEMAARHLFEL--EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 508 ~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
...+.+.+++...+ +|.++..|..++-.+...|++++|...+++..+.+
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 44556666666664 67788889999999999999999999999998766
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.022 Score=49.37 Aligned_cols=95 Identities=11% Similarity=0.035 Sum_probs=73.1
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 436 (696)
..-.+...+...|++++|.++|+-+. ..+..-|..|..++-..|++++|+..|....... +-|..++-.+..++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 33445556678889999999888665 3456678888888888999999999999888854 3345777788888888
Q ss_pred CCcHHHHHHHHHHhHHhhC
Q 005454 437 ADLFERGQNHFDSISAVHG 455 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~ 455 (696)
.|+.+.|++.|+......+
T Consensus 116 lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICG 134 (157)
T ss_pred cCCHHHHHHHHHHHHHHhc
Confidence 9999999999988876543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.73 Score=49.10 Aligned_cols=228 Identities=14% Similarity=0.075 Sum_probs=113.2
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCC-CCc------------chHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHH
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPL-RDI------------ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~------------~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 126 (696)
..|..|...-.+.-.++.|+..|-+... +.+ ..-.+=|.+| -|++++|.+++-.|.++|..
T Consensus 693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA---- 766 (1189)
T KOG2041|consen 693 RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA---- 766 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh----
Confidence 5666666655555566666666655432 111 1111112222 37888888888888777653
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHCCCCCCc----chHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 005454 127 AIAGFANKGFSREALQVFSRMQKDRFEPTD----YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202 (696)
Q Consensus 127 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 202 (696)
|..+.+.|++-...++++.- |-..|. ..|..+-..++....++.|.+.+..--. ....+++|.
T Consensus 767 -ielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly 833 (1189)
T KOG2041|consen 767 -IELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLY 833 (1189)
T ss_pred -HHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHH
Confidence 45555666666555554321 111111 2455555555555566666655543211 123445555
Q ss_pred cCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 005454 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282 (696)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 282 (696)
+..++++-+.+-..+++ |....-.|...+...|..++|.+.|-+- + .| ...+..|...+++.+|.++-+.
T Consensus 834 ~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 834 RLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555444443 2233445556666666666666554321 1 11 1233445555666666666655
Q ss_pred ccCCChhHHHH--------------HHHHHHhcCChhHHHHHHHHhcc
Q 005454 283 IKEKDNVCWTT--------------MIVGYTQNGKEEDALILFNEMLS 316 (696)
Q Consensus 283 ~~~~~~~~~~~--------------li~~~~~~g~~~~A~~~~~~m~~ 316 (696)
..-|.+.+.-+ -|..+.+.|++-.|-+++.+|.+
T Consensus 904 ~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 904 FQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred ccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 55443332111 12334455555555555555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.1 Score=52.58 Aligned_cols=161 Identities=15% Similarity=0.088 Sum_probs=102.7
Q ss_pred HHHhhHHhcCChHHHHHHHhcCCCC---C----chHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005454 363 ALIDMYCKCGVTDDAWTVFNMMPTR---N----VVSWNSMINGYAQ---NGQDLEALALYDKLLQENLKPDSFTFVSVLS 432 (696)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 432 (696)
.|+-.|-...+++.-+++.+.+... + ...-....-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577788888888888877643 1 1122233445556 7899999999998666666788888877776
Q ss_pred HHhc---------CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHH----HHHHHH---H----hC---CCC
Q 005454 433 ACLH---------ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD----KAVDLI---K----SL---PHK 489 (696)
Q Consensus 433 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~----~~---~~~ 489 (696)
.|-. ....++|+..|.+.- .+.|+..+--.++.++...|.-. +..++- . +- ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6531 234677887776553 45566543333344444444322 222222 1 11 112
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 490 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
.|--.+.+++.++.-.||.+.|.+++++++++.|+.-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4555678999999999999999999999999987643
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0023 Score=47.79 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCC
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKG-DIKHGEMAARHLFELEP 523 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 523 (696)
...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455666777777777777777777653 2345 4558888888888888 79999999999998887
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.94 Score=48.90 Aligned_cols=114 Identities=13% Similarity=0.113 Sum_probs=78.4
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHH
Q 005454 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331 (696)
Q Consensus 252 g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 331 (696)
|..-...|.+-.+.-+...|+..+|.++-.+..-+|-..|-.-+.+++..+++++-+++-+.+. .+..|.-...
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 4445556667777777788888888888888888888888777888888888887666655543 2556666777
Q ss_pred HHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHH
Q 005454 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380 (696)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 380 (696)
+|.+.|+.++|..+...... +.-.+.+|.++|++.+|.++
T Consensus 753 ~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHH
Confidence 77777777777766554321 11456667777777666554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.02 Score=58.86 Aligned_cols=59 Identities=14% Similarity=0.337 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc
Q 005454 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284 (696)
Q Consensus 226 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 284 (696)
.++|..|.+.|..++++.+++.=...|+-||..|++.|+..+.+.|++..|.++...|.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555544443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0064 Score=58.87 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---chHHHH
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLPH-KPNS----LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA---GPYIML 532 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l 532 (696)
..|...+..+.+.|++++|...|+.+.. -|+. .++-.+..++...|+++.|...|+++++..|+++ .++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555555666777777777765432 2332 3566677777888888888888888888777654 455666
Q ss_pred HHHHhhcCChhHHHHHHHHhhh
Q 005454 533 SNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 533 ~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+.+|...|++++|.++++++.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7788888888888888887765
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.11 Score=49.94 Aligned_cols=55 Identities=7% Similarity=0.052 Sum_probs=46.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCc---hHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPINAG---PYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
..-|.+.|++.-|..-++.+++..|+.+. +...+..+|...|..++|.++.....
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34577889999999999999998887654 57788899999999999999887654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0011 Score=49.30 Aligned_cols=49 Identities=8% Similarity=0.107 Sum_probs=24.2
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC
Q 005454 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 436 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 486 (696)
..|++++|+++|+.+... .+-+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566666666655542 1223444444555555555555555555554
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.18 Score=52.89 Aligned_cols=101 Identities=14% Similarity=0.067 Sum_probs=57.7
Q ss_pred HhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHH
Q 005454 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378 (696)
Q Consensus 299 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 378 (696)
..+|-.+-+.++-+++-. .+..+...+..-+.+...+..|.++|..+-.. ..++++....++|++|.
T Consensus 727 ~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAF 793 (1081)
T KOG1538|consen 727 GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAF 793 (1081)
T ss_pred hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhH
Confidence 344545555555444432 23334444444445566667777777766432 35777888889999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHH
Q 005454 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412 (696)
Q Consensus 379 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 412 (696)
.+-++.++--...|.....-++...++++|.+.|
T Consensus 794 alAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 794 ALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred hhhhhCccccccccchHHHHhhhhhhHHHHHHHH
Confidence 9988888533333333344445555555554433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.015 Score=46.66 Aligned_cols=80 Identities=13% Similarity=0.021 Sum_probs=65.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCC-CCCcchHHHHHHHHHccC--------ChHHHHHHHHHHHHcCCCCchhHH
Q 005454 124 YNTAIAGFANKGFSREALQVFSRMQKDRF-EPTDYTHVSALNACAQLL--------DLRRGKQIHGKIVVGNLGGNVFVR 194 (696)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 194 (696)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 999999999999887553 233566788889999999999999
Q ss_pred HHHHHHHHc
Q 005454 195 NALTDMYAK 203 (696)
Q Consensus 195 ~~li~~~~~ 203 (696)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0052 Score=62.44 Aligned_cols=65 Identities=15% Similarity=-0.007 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch---HHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP---YIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
+...|+.+..+|...|++++|...++++++++|++..+ |..++.+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45577777777777777777777777777777777643 777777777777777777777776653
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.021 Score=56.36 Aligned_cols=127 Identities=19% Similarity=0.128 Sum_probs=81.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 005454 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA-CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201 (696)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 201 (696)
.|-.+++..-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 46666666666666777777777776432 1112222222222 22345666677787777766 455777788888888
Q ss_pred HcCCCHHHHHHHHHhcCC--C----ChhHHHHHHHHHHhCCCchHHHHHHHHHHHc
Q 005454 202 AKGGEIDKARWLFDRMNN--R----NLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251 (696)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 251 (696)
.+.|+.+.|+.+|++... + ....|...+..=.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888765 2 2346888888777788888888887777764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.011 Score=58.83 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=86.2
Q ss_pred HHHHhccCCHHHHHHHHHhCC--------C---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchH
Q 005454 467 INLLGRSSDVDKAVDLIKSLP--------H---------KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~~~--------~---------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
.+.|.+.|++..|..-|++.. . ..-..++..|..+|.+.+++..|.+...++++++|+|.-+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 345666676666666655421 0 12244677888888999999999999999999999999999
Q ss_pred HHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHH
Q 005454 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601 (696)
Q Consensus 530 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~ 601 (696)
..-+.+|...|+++.|+..|+++.+ ..|.+..|..++..+.+++++
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k--------------------------~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK--------------------------LEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999976 246667788888777777765
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.034 Score=46.37 Aligned_cols=91 Identities=11% Similarity=0.102 Sum_probs=64.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHh
Q 005454 395 MINGYAQNGQDLEALALYDKLLQENLKPD--SFTFVSVLSACLHADLFERGQNHFDSISAVHGITP-SLDHYACMINLLG 471 (696)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 471 (696)
+..++-..|+.++|+.+|++....|+... ...+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667788999999999999999886655 34666777888899999999999988876431111 1222233445677
Q ss_pred ccCCHHHHHHHHHh
Q 005454 472 RSSDVDKAVDLIKS 485 (696)
Q Consensus 472 ~~g~~~~A~~~~~~ 485 (696)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78888888776643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.11 Score=48.48 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCC-----CCchHHHHHH
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV-----DDDLLVSSAL 364 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l 364 (696)
.-+.++..+...|.+.-.+..+++.++...+.++...+.+.+...+.|+.+.+...++...+..- .....+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45667777888899999999999999876667777888888888999999999999998776433 3333344444
Q ss_pred HhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005454 365 IDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430 (696)
Q Consensus 365 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 430 (696)
...|.-.+++..|...|.+++. .|++.-|.-.-+..-.|+..+|++..+.|++ ..|...+-.++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 4556777888889999987773 4666777766667778999999999999998 45665544433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.008 Score=59.17 Aligned_cols=129 Identities=9% Similarity=0.021 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHH---hHHhhCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhC-------CCC-CCH
Q 005454 425 FTFVSVLSACLHADLFERGQNHFDS---ISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSL-------PHK-PNS 492 (696)
Q Consensus 425 ~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~-p~~ 492 (696)
..|..|.+.|.-.|+++.|+...+. +.+.+|-.. ....+..+.+.+.-.|+++.|.+.++.. +.+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566666666677889999877654 223344332 2457788888999999999999888752 221 233
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc----C--CCCCchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFEL----E--PINAGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
.+--+|..+|....+++.|...+.+-+.+ + .....++..|+++|...|..+.|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35567788888888888888887765443 2 2345678899999999999999998876654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.032 Score=44.90 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcCC--------cHHHHHHHHHHhHHhhCCCCChHHH
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQENL-KPDSFTFVSVLSACLHAD--------LFERGQNHFDSISAVHGITPSLDHY 463 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~~ 463 (696)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+.+.+.+++.|... +++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3456666667999999999999999999 899999999998866432 355677888888874 899999999
Q ss_pred HHHHHHHhc
Q 005454 464 ACMINLLGR 472 (696)
Q Consensus 464 ~~li~~~~~ 472 (696)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988887754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.003 Score=42.10 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
.+|..+..++...|++++|+++++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888999999999999999999999999999998888764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.82 Score=45.41 Aligned_cols=240 Identities=18% Similarity=0.204 Sum_probs=154.1
Q ss_pred hcCChhHHHHHHHHhccCCCCCCc--cchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHH
Q 005454 300 QNGKEEDALILFNEMLSEDVRPDK--FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377 (696)
Q Consensus 300 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 377 (696)
-.|+++.|.+-|+.|... |.. ..+..+.-...+.|+.+.|+++-+..-..... -.....+++...+..|+|+.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHH
Confidence 357777777777777642 221 11222333334567777777777776665433 345667788888899999999
Q ss_pred HHHHhcCC-----CCCch--HHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCCcHHHHHHH
Q 005454 378 WTVFNMMP-----TRNVV--SWNSMINGYAQ---NGQDLEALALYDKLLQENLKPDSFT-FVSVLSACLHADLFERGQNH 446 (696)
Q Consensus 378 ~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~ 446 (696)
+++.+.-. ++++. .--.|+.+-+. ..+...|...-.+..+ +.||.+. -..-..++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 98887543 34443 22233333222 2456666666666655 6787643 33344678899999999999
Q ss_pred HHHhHHhhCCCCChHHHHHHHHHHhccCCHHHH--H--HHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005454 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKA--V--DLIKSLPHKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521 (696)
Q Consensus 447 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A--~--~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (696)
++.+-+. .|....+...+ +.|.|+.... . +-++.| +|| .....++..+-...|++..|..-.+.+..+
T Consensus 286 lE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 9998753 56555543322 3455543222 1 122333 444 446667778888899999999999999999
Q ss_pred CCCCCchHHHHHHHHhhc-CChhHHHHHHHHhh
Q 005454 522 EPINAGPYIMLSNMYAAC-GRWEDVASIRSSMK 553 (696)
Q Consensus 522 ~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~ 553 (696)
.|. ...|.+|+++-... |+-.++...+.+..
T Consensus 359 ~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 359 APR-ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 984 56788899886655 99998888876554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.21 Score=48.00 Aligned_cols=54 Identities=9% Similarity=0.133 Sum_probs=26.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 005454 396 INGYAQNGQDLEALALYDKLLQE--NLKPDSFTFVSVLSACLHADLFERGQNHFDS 449 (696)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 449 (696)
..-|.+.|.+..|+.-|+.+++. +.+........+..++...|..++|..+...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455556666666666655552 1111223444445555555555555554443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.026 Score=51.30 Aligned_cols=90 Identities=14% Similarity=0.252 Sum_probs=68.7
Q ss_pred CCCchHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC----------------CcHHHHH
Q 005454 386 TRNVVSWNSMINGYAQ-----NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA----------------DLFERGQ 444 (696)
Q Consensus 386 ~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----------------g~~~~a~ 444 (696)
.++..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.||..+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4566666667766664 356666667778888888888888888888876542 2356789
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhccCCH
Q 005454 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDV 476 (696)
Q Consensus 445 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 476 (696)
+++++|.. +|+-||.+++..+++.+++.+..
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 99999987 69999999999999999887754
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.56 E-value=1.5 Score=47.39 Aligned_cols=328 Identities=13% Similarity=0.101 Sum_probs=167.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccC---ChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 005454 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL---DLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201 (696)
Q Consensus 125 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 201 (696)
..+|.-+...+.+..|+++-..|...-..- ...|........+.. +.+.+..+-+++... . .+...|..+..-.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHH
Confidence 445666667777777777766664321111 344444444443332 222233333333221 2 2334455566666
Q ss_pred HcCCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCH
Q 005454 202 AKGGEIDKARWLFDRMNNR--------NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273 (696)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 273 (696)
..+|+.+.|..+++.=+.. +..-+...+.-..+.|+.+-...++-.|...- +...+... ..+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhc
Confidence 6788888888877654431 22234455566666777777666666554421 11111111 1122
Q ss_pred HHHHHHHHhccC-CChhHHHHHHHHHHhcCChhHHHHHHHH-h-cc-CCCCCCccchHHHHHHHHhhcCchhHHHHHH--
Q 005454 274 DDAGRLFHVIKE-KDNVCWTTMIVGYTQNGKEEDALILFNE-M-LS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHG-- 347 (696)
Q Consensus 274 ~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~-m-~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~-- 347 (696)
..|..++..... .|..+ +- .+.+.++..+++.-|.. - .. .-+.+-.........++++........+..+
T Consensus 589 p~a~~lY~~~~r~~~~~~---l~-d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQDRAT---LY-DFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred hhhhHHHHHHHHhhchhh---hh-hhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 333333333222 11111 11 11222222222222211 0 00 0011222223334445554443222211111
Q ss_pred --------HHH-HhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005454 348 --------KAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418 (696)
Q Consensus 348 --------~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 418 (696)
.+. +.|......+.+--+.-+...|+...|.++-.+..-||-..|---+.+++..+++++-+++-+.+..
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks- 743 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS- 743 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-
Confidence 111 1122222223333444566778888899988888888888888888888888888877766554431
Q ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHH
Q 005454 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484 (696)
Q Consensus 419 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 484 (696)
+.-|.....+|.+.|+.++|.+++-+.. |. . -.+.+|.+.|++.+|.++--
T Consensus 744 -----PIGy~PFVe~c~~~~n~~EA~KYiprv~---~l---~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 744 -----PIGYLPFVEACLKQGNKDEAKKYIPRVG---GL---Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred -----CCCchhHHHHHHhcccHHHHhhhhhccC---Ch---H----HHHHHHHHhccHHHHHHHHH
Confidence 4567778888999999999988876542 11 1 46788888888888876643
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.025 Score=47.22 Aligned_cols=86 Identities=14% Similarity=0.022 Sum_probs=55.7
Q ss_pred HHHHhccCCHHHHHHHHHhCCC---C-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CCchHHHHHHHHhh
Q 005454 467 INLLGRSSDVDKAVDLIKSLPH---K-PN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI---NAGPYIMLSNMYAA 538 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~~~~---~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 538 (696)
..++-..|+.++|+.++++... . ++ ...+-.+.++++..|++++|..++++.++..|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445556666666666654321 1 11 225556677777788888888888887777676 55556667777788
Q ss_pred cCChhHHHHHHHHh
Q 005454 539 CGRWEDVASIRSSM 552 (696)
Q Consensus 539 ~g~~~~A~~~~~~m 552 (696)
.|++++|.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 88888887776443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.026 Score=58.07 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 005454 195 NALTDMYAKGGEIDKARWLFDRMNN----RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT 270 (696)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 270 (696)
.++|+.|.+.|..+.+..++..=.+ ||..++|.||..+.+.|++..|.++..+|...+...+..|+..-+.++.+.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 3444445555555554444443322 444455555555555555555555555555554444555555444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.7 Score=45.99 Aligned_cols=181 Identities=14% Similarity=0.093 Sum_probs=125.2
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCCCC---CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTR---NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 433 (696)
+..+|..-++.-.+.|+.+.+.-.|++..-| -...|-..+.-....|+.+-|..++....+-..+-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567777888888899999999999887644 2235666666566668888888888777664333333222222223
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhccCCHHHHH---HHHHhCC-CCCCHHHHHHHHH-----HHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSL-DHYACMINLLGRSSDVDKAV---DLIKSLP-HKPNSLIWSTLLS-----VCA 503 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~ll~-----~~~ 503 (696)
+-..|+++.|..+++.+.++ . |+. ..-..-+....+.|..+.+. +++.... .+-+..+...+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 56788999999999999874 3 654 34444567778899999888 5555432 2223222222222 234
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
..++.+.|..++.++.+..|++...|..+++.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5789999999999999999999999999998877766
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.75 Score=46.08 Aligned_cols=21 Identities=5% Similarity=0.029 Sum_probs=13.3
Q ss_pred HHHHHHHHhhcCChhHHHHHH
Q 005454 529 YIMLSNMYAACGRWEDVASIR 549 (696)
Q Consensus 529 ~~~l~~~~~~~g~~~~A~~~~ 549 (696)
+...+.+|...++.+++.+..
T Consensus 417 FkevgeAy~il~d~~kr~r~d 437 (486)
T KOG0550|consen 417 FKEVGEAYTILSDPMKRVRFD 437 (486)
T ss_pred HHHHHHHHHHhcCHHHHhhcc
Confidence 445666777777776666543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.8 Score=46.23 Aligned_cols=115 Identities=12% Similarity=0.068 Sum_probs=70.1
Q ss_pred CCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-CChhH------------HHHHHHHHHhCCCchHHHHHHHHHHHcCCC
Q 005454 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-RNLVS------------WNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254 (696)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~------------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 254 (696)
.|.+..|..|.......-.++.|+..|-+... +.+.. -.+=|.+| .|++++|.++|-+|-+..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 57788888888877777788888888877654 22211 11222222 4788888888877755432
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhccCC-----ChhHHHHHHHHHHhcCChhHHHHHHHH
Q 005454 255 PDEVTVSNILGACFQTGRIDDAGRLFHVIKEK-----DNVCWTTMIVGYTQNGKEEDALILFNE 313 (696)
Q Consensus 255 p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~ 313 (696)
.+..+.+.|++-...++++.-... -...|+.+...+...-.|++|.+.|..
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456667776666666543211 123566666666666666666666654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.033 Score=50.69 Aligned_cols=88 Identities=9% Similarity=0.110 Sum_probs=50.6
Q ss_pred CCcchHHHHHHHHHhC-----CChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHcc----------------CChHHHHH
Q 005454 119 RDSVSYNTAIAGFANK-----GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL----------------LDLRRGKQ 177 (696)
Q Consensus 119 ~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~~a~~ 177 (696)
+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||..+-+. .+.+.|..
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 4444444455444322 44444444555555555555555555555544221 23455677
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHcCCC
Q 005454 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGE 206 (696)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 206 (696)
++++|...|+-||..++..|++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 77777777777777777777777755544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.065 Score=47.06 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+...++..+...|+++.|...+++++..+|-+-..|..++.+|...|+..+|.++++++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5566777788999999999999999999999999999999999999999999999988853
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.39 Score=42.52 Aligned_cols=120 Identities=10% Similarity=0.104 Sum_probs=66.8
Q ss_pred CchHHHHHHHhhHHhcCChHHHHHHHhcCC----CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHH
Q 005454 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMP----TRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN---LKPDSFTFV 428 (696)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~ 428 (696)
|++..--.|.+.....|+..+|...|++.. ..|....-.+..+....+++.+|...++.+-+.+ -.|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 444444455555666666666666665443 2344555555555666666666666666665532 1222 333
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHH
Q 005454 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 480 (696)
.+...+...|.+.+|+.-|+....- -|+...-......+.++|+.++|.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHH
Confidence 4455566666777777766666542 355444444455666666666554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.8 Score=42.94 Aligned_cols=165 Identities=9% Similarity=0.059 Sum_probs=97.0
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCCC--CCch--------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMPT--RNVV--------SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 430 (696)
+++|...|.-..-+.+-...|+.-.. ..+. .-+.++..+.-+|.+.-.+.++++.++..-+.+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 44555555544444444444443222 1222 3355666666778888888889988886655566777777
Q ss_pred HHHHhcCCcHHHHHHHHHHhHHhh----CCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHh
Q 005454 431 LSACLHADLFERGQNHFDSISAVH----GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK--PNSLIWSTLLSVCAM 504 (696)
Q Consensus 431 l~a~~~~g~~~~a~~~~~~m~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~~~~ 504 (696)
.+.-.+.|+.+.|..+|+...+.. ++.-.......+...|.-+.++.+|...+.+++.. .|+...|+-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 788888999999999998776542 22222233333334455566666776666665542 233333333323333
Q ss_pred cCChHHHHHHHHHHHhcCCCC
Q 005454 505 KGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~p~~ 525 (696)
.|+...|.+..+.+.+..|..
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHhccCCcc
Confidence 566667777777777666643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.015 Score=43.94 Aligned_cols=64 Identities=13% Similarity=0.240 Sum_probs=49.8
Q ss_pred HHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 468 NLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
..|.+.+++++|.+.++.+. ..| +...|......+...|+++.|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 46777888888888887743 234 45577888888899999999999999999999987665444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0074 Score=46.34 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC----CC---CCchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELE----PI---NAGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
+++.+...+...|++++|+..+++++++. +. -..++..++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56666667777777777777777766542 11 23457788888888888888888887654
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.1 Score=50.55 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
.+..+...+...|+.+.|...++++++..|++..
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 4444555666778888888888888888886553
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.01 E-value=3.2 Score=45.63 Aligned_cols=179 Identities=11% Similarity=0.019 Sum_probs=118.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHhcCCCCCcch---HHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHc
Q 005454 92 SWNALLSAHARSGSVQDLRALFDKMPIRDSVS---YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168 (696)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 168 (696)
....-|++..+...++-|..+-..-..+.... ...-.+-+.+.|++++|..-|-+-... +.| ..++.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 34456777788888888888776654322111 222234456789999999988776632 233 235555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChh--HHHHHHHHHHhCCCchHHHHHHH
Q 005454 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV--SWNLMISGYLKNGQPKKCIDLFQ 246 (696)
Q Consensus 169 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~ 246 (696)
......-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+.... ... -....+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 55666667778888888876 555567899999999999998888887762 222 24456677777777777776655
Q ss_pred HHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 005454 247 EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK 286 (696)
Q Consensus 247 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 286 (696)
+... .......+ +-..+++++|.+.+..++.+
T Consensus 488 k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 488 KFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred Hhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHH
Confidence 4322 22222222 45678899999999998854
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.83 E-value=2.5 Score=42.95 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=99.8
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChH-HHHH
Q 005454 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD-HYAC 465 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~ 465 (696)
-...|-..+..-.+....+.|..+|-+..+.| +.++...+.+++.-++ .|+..-|..+|+.-... + ||.. .-.-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f-~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--F-PDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--C-CCchHHHHH
Confidence 34567777777777888888999999998888 6677778888887554 47778888888876653 2 4433 3345
Q ss_pred HHHHHhccCCHHHHHHHHHhCCC--CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 005454 466 MINLLGRSSDVDKAVDLIKSLPH--KPN--SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~~--~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 525 (696)
.++-+.+.++-+.|..+|+.... ..+ ..+|..++.--..-|+...+..+-+++.++-|+.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 66777888999999999985432 122 4588888888888899988888888888888864
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.61 Score=38.78 Aligned_cols=139 Identities=14% Similarity=0.190 Sum_probs=77.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHH
Q 005454 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 480 (696)
-.|..++..++..+...+ .+..-++-++--...+-+-+-..+.++.+-+.+.+. .+|++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHHH
Confidence 346666677777666553 233334444433333333344445555544322222 233444433
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCc
Q 005454 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558 (696)
Q Consensus 481 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 558 (696)
.-+-.+. .+......-+......|+-+.-.+++..+.+-+..+|.....++++|.+.|...++.+++++.-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3333332 233344556777888999999999999988766678889999999999999999999999999998874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.072 Score=43.86 Aligned_cols=90 Identities=12% Similarity=0.118 Sum_probs=72.2
Q ss_pred HHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----chHHHHHHHHhhcCC
Q 005454 468 NLLGRSSDVDKAVDLIKSL-PHK-PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA----GPYIMLSNMYAACGR 541 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 541 (696)
-++...|+++.|++.|.+. ..- .....||.-..+++..|+.++|..-+++++++..+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788888888888663 223 3667899999999999999999999999999874333 258888899999999
Q ss_pred hhHHHHHHHHhhhCCC
Q 005454 542 WEDVASIRSSMKSKNV 557 (696)
Q Consensus 542 ~~~A~~~~~~m~~~~~ 557 (696)
-+.|..-|+...+-|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998877664
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.022 Score=43.65 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=33.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhC-------CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSL-------PH-KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (696)
.|+.+...|.+.|++++|++.+++. +. .|+ ..++..+...+...|++++|+..+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444445555555555554444332 11 122 346667777777777777777777776653
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.47 E-value=3.1 Score=41.55 Aligned_cols=250 Identities=16% Similarity=0.146 Sum_probs=136.9
Q ss_pred CCCchHHHHHHHHHHHcCCCCCcch--HHHHHHHHHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHhcCChhHHHH
Q 005454 235 NGQPKKCIDLFQEMQLLGLNPDEVT--VSNILGACFQTGRIDDAGRLFHVIKEK---DNVCWTTMIVGYTQNGKEEDALI 309 (696)
Q Consensus 235 ~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 309 (696)
.|+++.|.+-|+.|... |.... +..|.-.--+.|..+.|.+.-+..-.. -...+.+.+...+..|+|+.|++
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHH
Confidence 46666666666666542 11111 112222233567777777666655432 34567788888888899999998
Q ss_pred HHHHhccCC-CCCCccc--hHHHHHHHHh---hcCchhHHHHHHHHHHhCCCCchHHH-HHHHhhHHhcCChHHHHHHHh
Q 005454 310 LFNEMLSED-VRPDKFS--ISSVVSSCAK---LASLYHGQVVHGKAVVLGVDDDLLVS-SALIDMYCKCGVTDDAWTVFN 382 (696)
Q Consensus 310 ~~~~m~~~g-~~p~~~t--~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~ 382 (696)
+++.-.... +.++..- -..++.+-.. ..+...|+..-.+..+. .||..-. ..-...|.+.|++.++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 888765432 3333321 1223322211 12344455554444443 3333222 223456778888888888887
Q ss_pred cCCC--CCchHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC
Q 005454 383 MMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458 (696)
Q Consensus 383 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 458 (696)
.+-+ |.+..| .+-.+++.|+ -++.-+++... ..++||. .+...+..+-...|++..|..--+... ...|
T Consensus 288 ~aWK~ePHP~ia--~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~p 360 (531)
T COG3898 288 TAWKAEPHPDIA--LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAP 360 (531)
T ss_pred HHHhcCCChHHH--HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCc
Confidence 7764 333322 2222334443 34444444322 1256664 566666777777888877776655554 4567
Q ss_pred ChHHHHHHHHHHh-ccCCHHHHHHHHHhCCCCCCHHHHH
Q 005454 459 SLDHYACMINLLG-RSSDVDKAVDLIKSLPHKPNSLIWS 496 (696)
Q Consensus 459 ~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~ 496 (696)
....|..|.+.-. ..|+-.++...+-+....|....|.
T Consensus 361 res~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 361 RESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred hhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCccc
Confidence 7777777777654 4477777777776544333333343
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.64 Score=43.39 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=37.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCc---hHHHHHHHHhhcCChhHHHH
Q 005454 498 LLSVCAMKGDIKHGEMAARHLFELEPINAG---PYIMLSNMYAACGRWEDVAS 547 (696)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 547 (696)
+..-|.+.|.+..|..-++.+++..|+.+. +...++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 345577889999999999999999987754 46678888999998885443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.31 E-value=1.8 Score=40.31 Aligned_cols=141 Identities=13% Similarity=0.157 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPD----SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 467 (696)
+-.....+...|++.+|.+.|+++... -|+ ......+..++.+.|++++|...++...+.+.-.|... +....
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~ 84 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYM 84 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHH
Confidence 344455666778888888888887764 222 23455566677777888888888887776654444321 11111
Q ss_pred HHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch-----------------HH
Q 005454 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-----------------YI 530 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------------~~ 530 (696)
.+......... .+ ......+....|...++.+++..|+++.+ -.
T Consensus 85 ~g~~~~~~~~~---~~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 85 LGLSYYKQIPG---IL----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp HHHHHHHHHHH---HH-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc---ch----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 11100000000 00 00122233455666666666666665532 34
Q ss_pred HHHHHHhhcCChhHHHHHHHHhhh
Q 005454 531 MLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 531 ~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.++..|.+.|.+..|..-++.+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHH
Confidence 578889999999999999998876
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.3 Score=41.19 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 419 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
.+.|+..+..+++.+++..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 35677777777777777777777777777777777776666666666554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=3 Score=39.15 Aligned_cols=193 Identities=17% Similarity=0.143 Sum_probs=122.3
Q ss_pred hHHHHHHHhhHHhcCChHHHHHHHhcCC-----CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005454 358 LLVSSALIDMYCKCGVTDDAWTVFNMMP-----TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432 (696)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 432 (696)
..........+...+....+...+.... ......+......+...+...++.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455555666666666666666665543 23344555566666667777777777777766432221 11222222
Q ss_pred -HHhcCCcHHHHHHHHHHhHHhhCCCC----ChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCC--HHHHHHHHHHHHh
Q 005454 433 -ACLHADLFERGQNHFDSISAVHGITP----SLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPN--SLIWSTLLSVCAM 504 (696)
Q Consensus 433 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~--~~~~~~ll~~~~~ 504 (696)
.+...|.++.+...+..... ..| ....+......+...++.++|...+..... .|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56677788888887777743 222 233344444446667788888877766432 333 5567777777788
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 505 KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.++.+.|...+...++..|.....+..++..+...|.++++...+.+...
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888887556666777777777778888887776655
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=1.6 Score=45.06 Aligned_cols=158 Identities=13% Similarity=0.161 Sum_probs=96.1
Q ss_pred hHH--HHHHHHHHHc-----CChHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHh---------cCCcHHHHHHHHHHhH
Q 005454 390 VSW--NSMINGYAQN-----GQDLEALALYDKLLQ-ENLKPDSF-TFVSVLSACL---------HADLFERGQNHFDSIS 451 (696)
Q Consensus 390 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~m~ 451 (696)
..| ..++.+.... ...+.|+.+|.+.+. +.+.|+.. .|..+..++. ......+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 5556655542 234578888998882 23677743 3333222211 1233455666666655
Q ss_pred HhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchH
Q 005454 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 452 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
+ --.-|......+..++.-.|+++.|..+|++.. ..||.. +|......+.-.|+.++|.+.+++.++++|....+-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 4 223345566666676777777888888887753 356544 666666667778888888888888888888766554
Q ss_pred HH--HHHHHhhcCChhHHHHHHH
Q 005454 530 IM--LSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 530 ~~--l~~~~~~~g~~~~A~~~~~ 550 (696)
+. .++.|+..+ .++|.+++-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHh
Confidence 43 333455544 566666653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.73 Score=44.45 Aligned_cols=105 Identities=15% Similarity=0.070 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc-C--CHHHHHHHHHhCC-CCC-CHHHH
Q 005454 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS-S--DVDKAVDLIKSLP-HKP-NSLIW 495 (696)
Q Consensus 421 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g--~~~~A~~~~~~~~-~~p-~~~~~ 495 (696)
+-|...|..|..+|...|+++.|..-|....+- -.++.+.+..+..++... | .-.++.++|+++. ..| |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 334566666777777777777777777666542 233445555555554332 2 3356677777643 344 44566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 496 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
..|...+...|++.+|...++.|++..|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 66777888899999999999999998876543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.67 Score=44.53 Aligned_cols=120 Identities=11% Similarity=0.119 Sum_probs=85.4
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChH
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST---LLSVCAMKGDIK 509 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~~ 509 (696)
.....|++.+|...|...... .+-+...--.|+..|...|+.++|..++..++.+-...-|.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456778888888888888763 233456667788999999999999999999887543333333 222233333333
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 510 HGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 510 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
+.. .+++-+..+|+|...-..|+..|...|+.++|.+.+=.+..+
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 234456678999999999999999999999999988777554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.43 Score=40.74 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=56.5
Q ss_pred HhccCCHHHHHHHHHhCCC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch---HHHHHHHHhhcCC
Q 005454 470 LGRSSDVDKAVDLIKSLPH----KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP---YIMLSNMYAACGR 541 (696)
Q Consensus 470 ~~~~g~~~~A~~~~~~~~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~ 541 (696)
..+.|++++|.+.|+.+.. .| ...+-..|+.++.+.|+++.|...+++.+++.|.++.+ +...+-++..+..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 3456777777777766532 22 23355678888999999999999999999999887754 3344444444443
Q ss_pred ---------------hhHHHHHHHHhhh
Q 005454 542 ---------------WEDVASIRSSMKS 554 (696)
Q Consensus 542 ---------------~~~A~~~~~~m~~ 554 (696)
..+|..-|+.+.+
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 5566666666544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.23 Score=49.62 Aligned_cols=137 Identities=12% Similarity=0.029 Sum_probs=95.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCC
Q 005454 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475 (696)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 475 (696)
.+.|.+.|++..|...|++.+.. |. +...-+.++..... ..-...+..+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 45677788888888888776551 00 00111111111111 1223456667778889999
Q ss_pred HHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHH-HHHHHHh
Q 005454 476 VDKAVDLIKSLP-H-KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV-ASIRSSM 552 (696)
Q Consensus 476 ~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m 552 (696)
+.+|++.-+... . ++|.-..--=..+|...|+++.|...|+++++++|.|-.+-..|+.+-.+..+..+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988877643 3 356666666778899999999999999999999999999999999888887776655 7788888
Q ss_pred hh
Q 005454 553 KS 554 (696)
Q Consensus 553 ~~ 554 (696)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.18 Score=51.71 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKS-LPHKPNS----LIWSTLLSVCAMKGDIKHGEMAARHLFEL 521 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (696)
...+..+..+|...|++++|+..|++ +...|+. .+|..+..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45666667777777777777777765 4445553 24777777777777777777777777775
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.25 Score=49.17 Aligned_cols=51 Identities=16% Similarity=0.075 Sum_probs=34.2
Q ss_pred HHHhCCChhHHHHHHHHhHHCCCCCCcc----hHHHHHHHHHccCChHHHHHHHHH
Q 005454 130 GFANKGFSREALQVFSRMQKDRFEPTDY----THVSALNACAQLLDLRRGKQIHGK 181 (696)
Q Consensus 130 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~ 181 (696)
-+++.|+.+..+.+|+...+.|. -|.. .|..|-++|.-.+|++.|.++|..
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 36788888888888888887762 2333 344455566666778888777653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.32 Score=42.58 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHH----hhCCCCChHH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA----VHGITPSLDH 462 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 462 (696)
...++..+...|++++|+.+.+.+.... +-|...+..++.++...|+..+|.+.|+.+.+ +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3345555666777777777777776642 33456677777777777777777777766532 3567776554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.47 E-value=2.6 Score=36.52 Aligned_cols=123 Identities=13% Similarity=0.097 Sum_probs=59.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchH
Q 005454 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240 (696)
Q Consensus 161 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 240 (696)
.++..+...+.......+++.+.+.+ ..+....|.++..|++.+ .......+.. ..+......++..|.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 34444444455555555555555554 245556666666666543 2333444442 1223333445555555565655
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhc-CCHHHHHHHHHhccCCChhHHHHHHHHH
Q 005454 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQT-GRIDDAGRLFHVIKEKDNVCWTTMIVGY 298 (696)
Q Consensus 241 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~ 298 (696)
+.-++.++.. +...+..+... ++.+.|.+++.+. .+...|..++..+
T Consensus 88 ~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~ 135 (140)
T smart00299 88 AVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKAL 135 (140)
T ss_pred HHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 5555554421 11122222222 5555665555542 2344555555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.39 E-value=2.9 Score=42.43 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=19.0
Q ss_pred cCChhHHHHHHHHhccCCCCCCccchHHHHHHH
Q 005454 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333 (696)
Q Consensus 301 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 333 (696)
.|+.++|++++..+......+++.|+..+.+.|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 566666666666654444555555555555443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.32 E-value=4.6 Score=37.74 Aligned_cols=195 Identities=14% Similarity=0.095 Sum_probs=101.0
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCC--chHHHHHHHHHHHcCCh
Q 005454 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN--VVSWNSMINGYAQNGQD 405 (696)
Q Consensus 328 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~ 405 (696)
....++....+++.+...+..+.+. .+.+...|. ....++.|.-+.+++.+-+ +..|+--...|..+|.+
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 3344555666666666655555431 111211111 1122333333444443322 22445556677777777
Q ss_pred HHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhC----CCCChHHHHHHHHHHhccCCHHHH
Q 005454 406 LEALALYDKLLQ--ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG----ITPSLDHYACMINLLGRSSDVDKA 479 (696)
Q Consensus 406 ~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A 479 (696)
+-|-..+++.-+ .++.|+ +|++++++...... ...-.+.|......|.+..++++|
T Consensus 108 dtAAmaleKAak~lenv~Pd------------------~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPD------------------DALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred chHHHHHHHHHHHhhcCCHH------------------HHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 766665555433 223443 33333333322100 011124455566777888888888
Q ss_pred HHHHHhCCC-------CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCCchHHHHHHHHhhcCChhHHHH
Q 005454 480 VDLIKSLPH-------KPNS-LIWSTLLSVCAMKGDIKHGEMAARHLFELE----PINAGPYIMLSNMYAACGRWEDVAS 547 (696)
Q Consensus 480 ~~~~~~~~~-------~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~ 547 (696)
-..|.+-.. -|+. ..+-+.+-.+....|+..|++.++.--+.. |++..+...|+.+| ..|+.+++.+
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 766654321 1333 134445555666678888888888765543 56666666776665 4577777776
Q ss_pred HH
Q 005454 548 IR 549 (696)
Q Consensus 548 ~~ 549 (696)
+.
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 65
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.31 E-value=4.4 Score=46.48 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=16.6
Q ss_pred CCCcchHHHHHHHHHhcC--CHHHHHHHHHhcc
Q 005454 254 NPDEVTVSNILGACFQTG--RIDDAGRLFHVIK 284 (696)
Q Consensus 254 ~p~~~t~~~ll~~~~~~g--~~~~A~~~~~~~~ 284 (696)
.|+ .-...+|.+|.+.+ .+++|+....++.
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344 34445666666665 5666665555544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.24 E-value=3.5 Score=39.80 Aligned_cols=155 Identities=16% Similarity=0.121 Sum_probs=100.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCC
Q 005454 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475 (696)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 475 (696)
.......|+..+|..+|....+.. +-+...-..+..++...|+++.|..++..+-.+ .-.........-+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhc
Confidence 345567788888888888887742 223455666777888889999998888776432 111111222334566666666
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCchHHHHHHHHhhcCChhH-HHHHHHH
Q 005454 476 VDKAVDLIKSLPHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELE--PINAGPYIMLSNMYAACGRWED-VASIRSS 551 (696)
Q Consensus 476 ~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~ 551 (696)
..+..++-.+.-..| |...-..|...+...|+.+.|...+=.++..+ -.+..+-..|..++...|.-|. +.+.+++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 666666666665566 55566677788888899988888777776654 4566677777777777774443 3333443
Q ss_pred h
Q 005454 552 M 552 (696)
Q Consensus 552 m 552 (696)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 3
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.20 E-value=2.5 Score=43.76 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=27.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhcCCcHHHHHHHHHHh
Q 005454 395 MINGYAQNGQDLEALALYDKLLQENLKP--DSFTFVSVLSACLHADLFERGQNHFDSI 450 (696)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m 450 (696)
+..+.-+.|+.++|++.|++|.+.. ++ +......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4444445566666666666665432 11 1223444555555555555555555443
|
The molecular function of this protein is uncertain. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.11 E-value=1.1 Score=46.32 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=88.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHH---
Q 005454 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD--- 477 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~--- 477 (696)
+..+...-+++-++.++ +.||-.+...++ +-..+..+.++.+++++..+... . .|++....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-----~-------~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-----A-------SLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-----H-------hhchhhhhhccc
Confidence 34555555666666666 566654433333 23345567888888888765310 0 011111000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI--NAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 478 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
...+.+.+-..+|-..+-..|..++++.|+.++|.+.++.+++..|. +......|+..|...+++.++..++.+--+-
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111111112233444456777788899999999999999887765 4557888999999999999999999887554
Q ss_pred CCcCCCc
Q 005454 556 NVKKFAA 562 (696)
Q Consensus 556 ~~~~~~~ 562 (696)
...+...
T Consensus 325 ~lpkSAt 331 (539)
T PF04184_consen 325 SLPKSAT 331 (539)
T ss_pred cCCchHH
Confidence 4444433
|
The molecular function of this protein is uncertain. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.10 E-value=2.5 Score=45.17 Aligned_cols=159 Identities=10% Similarity=0.101 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHhc----CCcHHHHHHHHHHhHHhhCCCCChHH
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQEN-LKPDS-----FTFVSVLSACLH----ADLFERGQNHFDSISAVHGITPSLDH 462 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~ 462 (696)
..++....-.|+-+.+++++.+..+.+ +.-.. .+|..++..++. ....+.+.++++.+.+.| |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 334455555566666666666654422 11111 123333332222 456777888888887643 66555
Q ss_pred HHHH-HHHHhccCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHH-HHHH
Q 005454 463 YACM-INLLGRSSDVDKAVDLIKSLPH-K-----PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI-MLSN 534 (696)
Q Consensus 463 ~~~l-i~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~ 534 (696)
|... ...+...|++++|.+.|++... + -....+--+...+....++++|...+.++.+...-+...|. ..+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4333 4556678888888888886432 1 12334445556677889999999999999987765555544 5566
Q ss_pred HHhhcCCh-------hHHHHHHHHhhh
Q 005454 535 MYAACGRW-------EDVASIRSSMKS 554 (696)
Q Consensus 535 ~~~~~g~~-------~~A~~~~~~m~~ 554 (696)
+|...|+. ++|.+++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 67788888 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.62 Score=48.92 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=86.1
Q ss_pred HHHHcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCH
Q 005454 398 GYAQNGQDLEALALYD-KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476 (696)
Q Consensus 398 ~~~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 476 (696)
.....|+++++.++.+ .-.-..++ ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 3445677887766664 11111122 33456677777788888888876543332 24667789999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 477 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
+.|.++.+... +...|..|.......|+++.|++.+++.- -+..|+-+|...|+-+.-.++.+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99988877764 77799999999999999999999988754 36678888888898887777776666655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.13 Score=31.55 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 525 (696)
..|..+...+...|++++|.+.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677778888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.097 Score=32.28 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888885
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.7 Score=47.55 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHh---------ccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 005454 439 LFERGQNHFDSISAVHGITPSL-DHYACMINLLG---------RSSDVDKAVDLIKSL-PH-KPNSLIWSTLLSVCAMKG 506 (696)
Q Consensus 439 ~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~---------~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g 506 (696)
..+.|..+|.+......+.|+- ..|..+...+. ......+|.++.++. .. .-|......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4567888898888544667763 44544443332 122345566666553 23 346777777777778888
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+.+.|...|+++..++|+.+.+|...+....-+|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999987544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.66 Score=43.92 Aligned_cols=101 Identities=11% Similarity=0.130 Sum_probs=80.1
Q ss_pred HHHHHHhcCC--CCCchHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC----------
Q 005454 376 DAWTVFNMMP--TRNVVSWNSMINGYAQN-----GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD---------- 438 (696)
Q Consensus 376 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 438 (696)
..+..|..+. ++|-.+|-+++..+..+ +..+=....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456666666 67778888888887654 556666777889999999999999999998875533
Q ss_pred ------cHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHH
Q 005454 439 ------LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477 (696)
Q Consensus 439 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 477 (696)
+-+=++.++++|.. +|+.||-++-..+++++++.+..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 23457899999986 799999999999999999998653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.9 Score=45.41 Aligned_cols=152 Identities=12% Similarity=0.064 Sum_probs=93.0
Q ss_pred cCCCHHHHHHHHH--hcC-CCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 005454 203 KGGEIDKARWLFD--RMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL 279 (696)
Q Consensus 203 ~~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 279 (696)
-.|+++++.+... ++. .-+..-.+.++.-+-+.|.++.|+++..+-.. -.....++|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHH
Confidence 4567777544443 111 11234477788888888888888887544221 23445688999999888
Q ss_pred HHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchH
Q 005454 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359 (696)
Q Consensus 280 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 359 (696)
.+++. +...|..|.....++|+++-|.+.|.+... +..++-.|...|+.+.-.++...+...|-
T Consensus 341 a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----- 404 (443)
T PF04053_consen 341 AKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD----- 404 (443)
T ss_dssp CCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------
T ss_pred HHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----
Confidence 77665 566899999999999999999999988653 55666677777887777777766666553
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhc
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNM 383 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~ 383 (696)
+|....++...|+.++..+++.+
T Consensus 405 -~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 -INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHH
Confidence 23334444555666665555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.81 E-value=7.5 Score=38.34 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=28.6
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCCC-C--CchHHHHHHHHH---HHcCChHHHHHHHHHHHHCCCCCCH
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMPT-R--NVVSWNSMINGY---AQNGQDLEALALYDKLLQENLKPDS 424 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~ 424 (696)
.++-.-+....+.++.+.+.+++..|.. . ....+..++..+ .. .....|...++.++...+.|..
T Consensus 122 ~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 122 EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 3333334444445666666666665542 1 122333333333 22 2233455555555444344443
|
It is also involved in sporulation []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.68 E-value=6.1 Score=36.96 Aligned_cols=195 Identities=15% Similarity=0.091 Sum_probs=123.4
Q ss_pred hHHHHHHHHhhcCchhHHHHHHHHHHh-CCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC--CCc-hHHHHHHH-HHH
Q 005454 326 ISSVVSSCAKLASLYHGQVVHGKAVVL-GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RNV-VSWNSMIN-GYA 400 (696)
Q Consensus 326 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~ 400 (696)
+......+...+.+..+...+...... ........+..+...+...+....+...+..... ++. ........ .+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 333344444444455444444444432 2223444455555566666667777777665553 211 22333333 678
Q ss_pred HcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhccCC
Q 005454 401 QNGQDLEALALYDKLLQENLKP----DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP-SLDHYACMINLLGRSSD 475 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 475 (696)
..|+.+.|...|.+... ..| ....+......+...+..+.+...+..... .... ....+..+...+...+.
T Consensus 142 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 142 ELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHccc
Confidence 88899999999988855 333 233444444446677888999998888875 2333 46777888888888889
Q ss_pred HHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 476 VDKAVDLIKSLPH-KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 476 ~~~A~~~~~~~~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
+++|...+..... .|+ ...+..+...+...++.+.+...+.+.++..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999888876533 444 445555556666677899999999999998886
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.62 Score=45.73 Aligned_cols=162 Identities=12% Similarity=0.110 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCH---HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC----ChHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDS---FTFVSVLSACLHADLFERGQNHFDSISAVHGITP----SLDH 462 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~ 462 (696)
+|-.+..++-+.-++.+++.+-..-.. .|..|.. ....++..+....+.++++.+.|+...+--.-.. ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 445555555555555555555444332 2223311 2223344566666678888888887764211111 2357
Q ss_pred HHHHHHHHhccCCHHHHHHHHH-------hCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCc-
Q 005454 463 YACMINLLGRSSDVDKAVDLIK-------SLPHKPNS-----LIWSTLLSVCAMKGDIKHGEMAARHLFELE--PINAG- 527 (696)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~-------~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~- 527 (696)
+..|...|++..++++|.-+.. ....+.-. .+.-.+.-+++..|....|.+..+++.++. ..|..
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 7788888888888887755443 33322111 233344557788888888888887775543 33333
Q ss_pred ---hHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 528 ---PYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 528 ---~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
....++++|...|+.|.|..-++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3456888888888888777766543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.54 E-value=12 Score=39.88 Aligned_cols=392 Identities=11% Similarity=0.039 Sum_probs=204.6
Q ss_pred HHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCC---CCcchHHHHHHHH
Q 005454 24 EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL---RDIISWNALLSAH 100 (696)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 100 (696)
..+..|+..-. ...+...+...+...+..-|-....|......=.+.|..+.+.++|++-.. ..+..|.......
T Consensus 46 ~~wt~li~~~~--~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 46 DAWTTLIQEND--SIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFL 123 (577)
T ss_pred cchHHHHhccC--chhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34555565444 334445555555555544332224555555555678889999999998765 3666676666655
Q ss_pred Hc-cCChhHHHHHHhcCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHH---c--
Q 005454 101 AR-SGSVQDLRALFDKMPI------RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA---Q-- 168 (696)
Q Consensus 101 ~~-~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~---~-- 168 (696)
.. .|+.+..++.|+.... .....|...|.--..++++.....+|++..+. |. ..|+....-+. +
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~~ 199 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQN 199 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhcC
Confidence 43 4677777888877653 34567888888888888999999999888764 21 11222222111 1
Q ss_pred ----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCC-HHHHHHHHHhcCCCCh---hHH-------HHHHHHHH
Q 005454 169 ----LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE-IDKARWLFDRMNNRNL---VSW-------NLMISGYL 233 (696)
Q Consensus 169 ----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~---~~~-------~~li~~~~ 233 (696)
....++..++-....... .-...+. .+.-....+....+.. ... +..-..+-
T Consensus 200 ~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~ 266 (577)
T KOG1258|consen 200 EEKILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQ 266 (577)
T ss_pred ChhhhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHH
Confidence 112233222222221100 0000011 1111111111111110 001 11111222
Q ss_pred hCCCchHHHHHHHHHHHc---CCCC----CcchHHHHHHHHHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHhcCC
Q 005454 234 KNGQPKKCIDLFQEMQLL---GLNP----DEVTVSNILGACFQTGRIDDAGRLFHVIKEKD---NVCWTTMIVGYTQNGK 303 (696)
Q Consensus 234 ~~g~~~~A~~l~~~m~~~---g~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~ 303 (696)
..-...+..-.|+.-... .++| +..+|..-+.--.+.|+.+...-+|++..-+- ...|--.+.-....|+
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc
Confidence 222222333333332222 1222 33456666666677888888888888776542 2345555555555688
Q ss_pred hhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHH---HH
Q 005454 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW---TV 380 (696)
Q Consensus 304 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~---~~ 380 (696)
.+-|..++....+--++-.+.+-..-..-+-..|+...|..+++.+...- +.-..+-.--+.+..+.|+.+.+. .+
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l 425 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNEL 425 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHH
Confidence 88888777776654333222222222222345678899999998887765 222333334456667778888777 44
Q ss_pred HhcCCC--CCchHHHHHHHHH-----HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005454 381 FNMMPT--RNVVSWNSMINGY-----AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436 (696)
Q Consensus 381 ~~~~~~--~~~~~~~~li~~~-----~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 436 (696)
+....+ .+....+.+..-+ .-.++.+.|..++.++.+. ++++..-|..++.-+..
T Consensus 426 ~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 426 YSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred HHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 443331 2222223332222 2357788888888888774 35555666666655443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.11 E-value=3.5 Score=35.68 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=21.8
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHh
Q 005454 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370 (696)
Q Consensus 327 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 370 (696)
..++..+...+.......+++.+.+.+. .+....+.++..|++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 3445555555555555555555555442 344455555555544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.57 Score=44.35 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=64.1
Q ss_pred HHHHHHhcCC--CCCcchHHHHHHHHHhC-----CChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHcc-----------
Q 005454 108 DLRALFDKMP--IRDSVSYNTAIAGFANK-----GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL----------- 169 (696)
Q Consensus 108 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----------- 169 (696)
..++.|...+ ++|-.+|-+++..|... +..+---..++.|.+.|+.-|..+|..||+.+-+-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3445565555 55666666666655433 44454555567777777777777787777765332
Q ss_pred -----CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCC
Q 005454 170 -----LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206 (696)
Q Consensus 170 -----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 206 (696)
.+-+-+..++++|..+|+.||-.+-..|++++.+.|-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1234566777778888888887777777777766664
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.95 Score=38.22 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005454 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502 (696)
Q Consensus 423 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 502 (696)
|..++..++.++++.|+++....+.+.. +|+.++...- .+. +-..-+..|+..+..+++.++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHH
Confidence 4667888888888888888888877654 3554432110 000 111123347777777777777
Q ss_pred HhcCChHHHHHHHHHHHhcCC
Q 005454 503 AMKGDIKHGEMAARHLFELEP 523 (696)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p 523 (696)
...|++..|.++.+...+..|
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcC
Confidence 777777777777777766554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.63 E-value=2.2 Score=37.51 Aligned_cols=83 Identities=17% Similarity=0.045 Sum_probs=40.1
Q ss_pred HhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHH
Q 005454 369 CKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445 (696)
Q Consensus 369 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 445 (696)
...|++++|..+|+-+. .-|..-|..|..++-..+++++|+..|......+ .-|...+-....++...|+.+.|+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 34555555555555433 1234445555555555555555555555544322 1222333344444555555555555
Q ss_pred HHHHhHH
Q 005454 446 HFDSISA 452 (696)
Q Consensus 446 ~~~~m~~ 452 (696)
.|+....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5554443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.1 Score=43.68 Aligned_cols=159 Identities=17% Similarity=0.073 Sum_probs=115.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHH----HHHHHhccCCH
Q 005454 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC----MINLLGRSSDV 476 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~ 476 (696)
-.|...+|...++++++. .+.|...+.-.=.+|...|+...-...++++.. ...|+...|.. +.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999999885 566777777777899999999988888888875 44666644443 34455689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 477 DKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI----NAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 477 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
++|++.-++. ..+| |.-.-.++.......|+..++.+..++--..=.. -...|-..+-.|...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998774 4443 5556677888888899999998886654322111 12346677777888899999999998
Q ss_pred HhhhCCCcCCCc
Q 005454 551 SMKSKNVKKFAA 562 (696)
Q Consensus 551 ~m~~~~~~~~~~ 562 (696)
+=.-+.+.+..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765444444443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=11 Score=36.98 Aligned_cols=122 Identities=13% Similarity=0.030 Sum_probs=59.9
Q ss_pred CchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-CchHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005454 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG-QPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267 (696)
Q Consensus 189 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 267 (696)
++..+--..+.++.+.|+.+....+..-+..+|...-...+.++.+.+ ....+...+..+.. .+|...-...+.++
T Consensus 140 ~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aL 216 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGL 216 (280)
T ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 355555666666666666433333333333444444444444444432 13345555555543 34555555556666
Q ss_pred HhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 005454 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316 (696)
Q Consensus 268 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (696)
++.|+......+.+.+..++ .....+.++...|.. +|+..+.++.+
T Consensus 217 g~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 217 ALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 66666443333334433333 223445555555553 45555555554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.51 E-value=25 Score=40.77 Aligned_cols=152 Identities=11% Similarity=0.093 Sum_probs=71.0
Q ss_pred CChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHH----ccCChHHHHHHH
Q 005454 104 GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA----QLLDLRRGKQIH 179 (696)
Q Consensus 104 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~ 179 (696)
+++++|+.-+.++. ...|.-.+..--++|.+.+|+.++ .|+...+..+..+|+ ....++.|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444444444432 223444444444555555555543 566666655555443 334444444443
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC-ChhH--HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC
Q 005454 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR-NLVS--WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256 (696)
Q Consensus 180 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 256 (696)
+..-+. ..-+.+|..+|++.+|+.+-.++... |... -..|+.-+...+++-+|-++..+....
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd----- 1028 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD----- 1028 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-----
Confidence 332111 12344555555555555555555442 2221 145556666666666666665554321
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhc
Q 005454 257 EVTVSNILGACFQTGRIDDAGRLFHVI 283 (696)
Q Consensus 257 ~~t~~~ll~~~~~~g~~~~A~~~~~~~ 283 (696)
..-.+..|++...+++|.++-...
T Consensus 1029 ---~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 ---PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ---HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 112223344555555555544333
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.36 E-value=2.1 Score=45.72 Aligned_cols=26 Identities=12% Similarity=-0.084 Sum_probs=14.3
Q ss_pred hHHHHHHHHhhcCchhHHHHHHHHHH
Q 005454 326 ISSVVSSCAKLASLYHGQVVHGKAVV 351 (696)
Q Consensus 326 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 351 (696)
+..++....-.||-+.|.+.+....+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 34445555555666666666655544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.74 Score=41.32 Aligned_cols=90 Identities=13% Similarity=0.151 Sum_probs=69.8
Q ss_pred HHHhccCCHHHHHHHHHhC----CCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 468 NLLGRSSDVDKAVDLIKSL----PHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~----~~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
+-+.+.|++++|..-|... +.. -..+.|..-..+..+.+..+.|.....++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4456677777776666442 111 123456666677788999999999999999999998888888899999999
Q ss_pred ChhHHHHHHHHhhhCCC
Q 005454 541 RWEDVASIRSSMKSKNV 557 (696)
Q Consensus 541 ~~~~A~~~~~~m~~~~~ 557 (696)
++++|+.-++++.+...
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999987543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.27 E-value=4.4 Score=37.12 Aligned_cols=180 Identities=16% Similarity=0.146 Sum_probs=97.6
Q ss_pred hcCChHHHHHHHhcCC--CC-CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHH
Q 005454 370 KCGVTDDAWTVFNMMP--TR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQN 445 (696)
Q Consensus 370 ~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~ 445 (696)
..|-++-|+--|.... .| -+..||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++.-.|++.-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHH
Confidence 3344444444444322 23 345677777777888888888888888877 34432 222222223445677887777
Q ss_pred HHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 005454 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 446 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 525 (696)
-|...-+.-.-.|-...|-.++. +.-+..+|..-+.+--.+.|..-|...+-.+.-- .+. -+.+++++.+-..++
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a~a~~n 229 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLG-KIS-EETLMERLKADATDN 229 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHh-hcc-HHHHHHHHHhhccch
Confidence 66555432122232333332222 2335566654443222234555565555444321 111 122333333322222
Q ss_pred -------CchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 526 -------AGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 526 -------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
.++|..|+.-|...|+.++|..+|+.....+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999776544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.88 Score=43.32 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=37.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhccCC
Q 005454 401 QNGQDLEALALYDKLLQENLKPDS----FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL-DHYACMINLLGRSSD 475 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~ 475 (696)
+.|++.+|...|...++.. |+. ..+--|..++...|++++|..+|..+.++++-.|.. +.+--|.....+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 4455666666666666532 221 233345555555566666666665555544333332 333333333333333
Q ss_pred HHHHHHH
Q 005454 476 VDKAVDL 482 (696)
Q Consensus 476 ~~~A~~~ 482 (696)
.++|...
T Consensus 231 ~d~A~at 237 (262)
T COG1729 231 TDEACAT 237 (262)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.1 Score=42.77 Aligned_cols=90 Identities=16% Similarity=0.240 Sum_probs=59.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhC----CC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CchHHH
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSL----PH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN---AGPYIM 531 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~----~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 531 (696)
.|+.-++.| ..|++.+|...|... |. .||..- -|..++...|+++.|...|..+.+-.|++ |..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~y--WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYY--WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHH--HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455444433 455576666666543 22 133333 36677778888888888888877766554 455777
Q ss_pred HHHHHhhcCChhHHHHHHHHhhh
Q 005454 532 LSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 532 l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
|+.+..+.|+.++|..+++++.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 88888888888888888877765
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.13 E-value=4 Score=34.99 Aligned_cols=114 Identities=14% Similarity=0.086 Sum_probs=53.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc
Q 005454 397 NGYAQNGQDLEALALYDKLLQENLKPD---SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473 (696)
Q Consensus 397 ~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 473 (696)
....+.|++++|.+.|+.+...- +.. ...-..++.++.+.+++++|...+++.++.+.-.|+ ..|.....++..-
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 33445566666666666655531 111 234444555555666666666666665554333333 2222222222211
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 474 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
...+.+ +..+. ..=+-.+....|...|++++..-|++..
T Consensus 96 ~~~~~~---~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 96 EQDEGS---LQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHhhhH---Hhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 111111 11110 0001112356788888899998897653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.01 E-value=11 Score=35.88 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=34.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhcCCcHHHHHHHHHHhH
Q 005454 395 MINGYAQNGQDLEALALYDKLLQENLKPDS---FTFVSVLSACLHADLFERGQNHFDSIS 451 (696)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~ 451 (696)
+..-|.+.|.+-.|..-+++|++. .+-.. ..+-.+..+|...|..++|...-.-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 345677778888888888887775 22222 234445556666666666666554443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.27 Score=30.85 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=20.6
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 528 PYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 528 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788899999999999999988743
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.59 E-value=4.1 Score=39.81 Aligned_cols=180 Identities=10% Similarity=0.115 Sum_probs=116.2
Q ss_pred HhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHH--HHHhcCCcHH
Q 005454 369 CKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT--FVSVL--SACLHADLFE 441 (696)
Q Consensus 369 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll--~a~~~~g~~~ 441 (696)
-..|+..+|...++++. +.|..+|+--=.++...|+...-...+++.+.. ..||... |..=+ .++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34677788777777766 357888888889999999999999999998764 2455533 33222 3456789999
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCChHHHHHH
Q 005454 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN-------SLIWSTLLSVCAMKGDIKHGEMA 514 (696)
Q Consensus 442 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~ 514 (696)
+|++.-++..+.+ +.|.-.-.+....+.-.|+..++.+++.+-...-+ ..-|.. .-.+...+.++.|+.+
T Consensus 193 dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHH
Confidence 9999877766421 23344555677888889999999999987653211 112222 1223455889999999
Q ss_pred HHHH--HhcCCCCCch---HHHHHHHHhhcCChhHHHHHHHHh
Q 005454 515 ARHL--FELEPINAGP---YIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 515 ~~~~--~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
|++= .+++.+|..+ |.-+-.+..+.-.|.+-.++-+.+
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 9754 3455555533 333444445555555544444333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.58 Score=38.77 Aligned_cols=55 Identities=16% Similarity=0.058 Sum_probs=51.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
-+....|+.+.|.+.|.+.+.+-|.++++|+.-+.+|.-+|+.++|+.-+++..+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999988765
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=17 Score=35.75 Aligned_cols=17 Identities=12% Similarity=-0.201 Sum_probs=7.8
Q ss_pred chHHHHHHHhhHHhcCC
Q 005454 357 DLLVSSALIDMYCKCGV 373 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~ 373 (696)
+..+-...+.++.+.|+
T Consensus 141 ~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 141 STNVRFAVAFALSVIND 157 (280)
T ss_pred CHHHHHHHHHHHhccCC
Confidence 33444444444444444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.90 E-value=9.3 Score=42.26 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=49.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHH
Q 005454 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 480 (696)
+.|++++|...|-+-+.. +.|.. ++.-+..+....+-..+++.+.+. |+ .+..+-..|+.+|.+.++.++-.
T Consensus 380 ~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLdaq~IknLt~YLe~L~~~-gl-a~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 380 GKGDFDEATDQYIETIGF-LEPSE-----VIKKFLDAQRIKNLTSYLEALHKK-GL-ANSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred hcCCHHHHHHHHHHHccc-CChHH-----HHHHhcCHHHHHHHHHHHHHHHHc-cc-ccchhHHHHHHHHHHhcchHHHH
Confidence 445555555555444332 22321 233334444444444555555442 22 23444455555666666665555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005454 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH 517 (696)
Q Consensus 481 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 517 (696)
++++.....--..-....+..|++.+-.++|..+..+
T Consensus 452 efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 452 EFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 5555543110011123444455555555555554443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.45 Score=29.17 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777777788888888888888877773
|
... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.53 E-value=21 Score=39.65 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=13.2
Q ss_pred HhhcCChhHHHHHHHHh
Q 005454 536 YAACGRWEDVASIRSSM 552 (696)
Q Consensus 536 ~~~~g~~~~A~~~~~~m 552 (696)
+...|+|++|++.++++
T Consensus 515 ~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHTT-HHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhC
Confidence 67889999999888765
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.96 E-value=14 Score=32.94 Aligned_cols=134 Identities=15% Similarity=0.198 Sum_probs=66.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccC--CHHHHHHHHHhCC
Q 005454 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS--DVDKAVDLIKSLP 487 (696)
Q Consensus 410 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 487 (696)
+..+.+.+.+++|+...+..+++.+.+.|.+..-.+++ + +++-||.....+.+-.++... -.+-|.++++++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q-~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----Q-YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----h-hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 44455555666677667777777777766655544433 2 355555554444433332211 1344555555554
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 488 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
.. +..++..+...|++-+|.+..++....+. .....+..+-...++..--..+++-..+++
T Consensus 90 ~~-----~~~iievLL~~g~vl~ALr~ar~~~~~~~---~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 90 TA-----YEEIIEVLLSKGQVLEALRYARQYHKVDS---VPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hh-----HHHHHHHHHhCCCHHHHHHHHHHcCCccc---CCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 22 23444555566777666666655433221 122334444444444444444444443433
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.73 E-value=30 Score=38.49 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=14.8
Q ss_pred HhccCCHHHHHHHHHhCCCCC
Q 005454 470 LGRSSDVDKAVDLIKSLPHKP 490 (696)
Q Consensus 470 ~~~~g~~~~A~~~~~~~~~~p 490 (696)
+...|++++|++.+++++.-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 467888999999998887766
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.47 E-value=1.5 Score=38.34 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=34.5
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
..++.+.++.++..+.-+.|..+..-..-++++...|+|.+|.++++.+.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 45566666666666666666666666666666666666666666666665443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.63 Score=29.13 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFEL 521 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (696)
+|..|...|...|++++|..++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.25 E-value=12 Score=31.42 Aligned_cols=139 Identities=10% Similarity=0.104 Sum_probs=73.1
Q ss_pred HhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHH
Q 005454 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378 (696)
Q Consensus 299 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 378 (696)
.-.|..++..++..+.... .+..-++.++--.....+-+...++++. .|--.|. ..||++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~Lds---IGkiFDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDS---IGKIFDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHH---HGGGS-G----------GG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHH---HhhhcCc----------hhhcchHHHH
Confidence 4457777777777776643 2333344444333333332222222222 2221121 3455555555
Q ss_pred HHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCC
Q 005454 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456 (696)
Q Consensus 379 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 456 (696)
..+-.+.. +......-+..+...|+-+.-.+++.++.+. -.|++.....+..||.+.|+..++.+++..+-+. |+
T Consensus 77 ~C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 77 ECYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 55444332 2234455577788888888888888888763 3778888888888999999999998888888763 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.94 E-value=0.69 Score=44.97 Aligned_cols=113 Identities=11% Similarity=0.064 Sum_probs=78.9
Q ss_pred HHHHhcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC
Q 005454 431 LSACLHADLFERGQNHFDSISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGD 507 (696)
Q Consensus 431 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~ 507 (696)
.+-|.+.|.+++|+..|.... .+.| +..++..-..+|.+..++..|+.--..... +.-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 456788999999999998776 3456 778888888999999999888765544321 1112245555555556788
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 508 IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 508 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
..+|.+-++.+++++|.+.+ |-..|.+.....|+.-+.+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIATK 219 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHHhh
Confidence 99999999999999998644 4444555555555544443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.79 E-value=1.7 Score=37.26 Aligned_cols=54 Identities=17% Similarity=0.099 Sum_probs=45.7
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
..++.+.++.++..+.-+.|+.+..-..-+.++...|+|++|.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 378888888888888888898888888888889999999999999988876553
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.56 E-value=1.5 Score=28.91 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 424 (696)
+|..+...|...|++++|.++|++.++. .|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 4666777777777777777777777773 4554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.45 E-value=0.16 Score=44.41 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=51.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHH
Q 005454 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241 (696)
Q Consensus 162 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 241 (696)
++..+.+.+.++....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3445555566666667777777666566788888888888888777777777764332 3334555666666666666
Q ss_pred HHHHH
Q 005454 242 IDLFQ 246 (696)
Q Consensus 242 ~~l~~ 246 (696)
.-++.
T Consensus 90 ~~Ly~ 94 (143)
T PF00637_consen 90 VYLYS 94 (143)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.40 E-value=19 Score=36.87 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP----INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 490 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
....+|..+...+++.|+++.|...+.++...++ ..+.....-+..+...|+.++|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3455899999999999999999999999988662 2466777889999999999999999988876333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=88.19 E-value=5.3 Score=33.61 Aligned_cols=61 Identities=10% Similarity=0.022 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhc---CChHHHHHHHHHHHh-cCCCCC-chHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 494 IWSTLLSVCAMK---GDIKHGEMAARHLFE-LEPINA-GPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 494 ~~~~ll~~~~~~---g~~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+--.+..++.+. .|++++..+++.+++ -.|... .....|+-.+++.|+++.++++.+...+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444444433 345566777777765 223322 2334556667777777777777776655
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.87 E-value=49 Score=36.69 Aligned_cols=121 Identities=15% Similarity=0.148 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 005454 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271 (696)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 271 (696)
.++..+|+.+...|++++|-...-.|...+..-|.--+..+...++......++ ....-..+...|-.+|..+.. .
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~ 468 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-S 468 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH-H
Confidence 445566666777777777777777776666666666666666655554433221 111111223334444444333 1
Q ss_pred CHHHHHHH--------------HHhccC------CChhHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 005454 272 RIDDAGRL--------------FHVIKE------KDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316 (696)
Q Consensus 272 ~~~~A~~~--------------~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (696)
+...-.++ .+..+. .+...-..|+..|...+++..|+.++-..++
T Consensus 469 ~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 469 DVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 11111111 111110 1222234477888888888888888877653
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.72 E-value=20 Score=31.95 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=23.2
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHh
Q 005454 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR 216 (696)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 216 (696)
+...+.+.+++++..++..+++.+.+.|++..-..++.-
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~ 54 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY 54 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 344445556666666666666666666666555555443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.56 E-value=40 Score=35.38 Aligned_cols=155 Identities=14% Similarity=0.117 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHh
Q 005454 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370 (696)
Q Consensus 291 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 370 (696)
.-+++..+.++..+.-...+..+|+.-| .+...|..++..|... ..+.-..+|.++++..+. |+.....|++.|.+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk 144 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH
Confidence 3445555666666666666666666532 3445566666666655 445556666666666654 56666667776666
Q ss_pred cCChHHHHHHHhcCCC------CCc---hHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhcCCcH
Q 005454 371 CGVTDDAWTVFNMMPT------RNV---VSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSACLHADLF 440 (696)
Q Consensus 371 ~g~~~~A~~~~~~~~~------~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~ 440 (696)
++...+...|.++.. .+. ..|..++..- ..+.+..+.+...... .|..--.+.+.-+-.-|....++
T Consensus 145 -ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 145 -IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred -hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 666777666665431 011 1333333211 1233444444444433 22222234444444555566666
Q ss_pred HHHHHHHHHhHH
Q 005454 441 ERGQNHFDSISA 452 (696)
Q Consensus 441 ~~a~~~~~~m~~ 452 (696)
++|++++..+.+
T Consensus 222 ~eai~Ilk~il~ 233 (711)
T COG1747 222 TEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHhh
Confidence 666666665554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.31 E-value=2.5 Score=41.01 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.++..++..+...|+.+.+...++++++.+|-+-..|..+..+|.+.|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 35566777788888888889999999999998888899999999999999999998888865
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.30 E-value=1.3 Score=27.13 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (696)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3567777777778888888888877776 4454
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.01 E-value=29 Score=33.09 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=45.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCc---hHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPINAG---PYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
..-|.+.|.+.-|..-++.+++--|+.+. ++..+..+|...|..++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 34577899999999999999998776554 466778889999999999998876654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.93 E-value=39 Score=34.52 Aligned_cols=148 Identities=9% Similarity=0.001 Sum_probs=71.9
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC--hHH
Q 005454 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP---DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS--LDH 462 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~ 462 (696)
...+|..++..+.+.|+++-|...+.++...+..+ +......-....-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567777777777888888887777776643111 2222333334444567777777777666551 11111 111
Q ss_pred HHHHHHHHhccCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 005454 463 YACMINLLGRSSDVDKAVDL-IKSLPHKPNSLIWSTLLSVCAM------KGDIKHGEMAARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
...+...+.. ..+..... ........-..++..+..-+.. .++.+.+...++.+.++.|....+|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 0000000001122222222222 3778888999999999999887777777666
Q ss_pred Hhh
Q 005454 536 YAA 538 (696)
Q Consensus 536 ~~~ 538 (696)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=86.78 E-value=3.9 Score=28.27 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCC
Q 005454 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGF 604 (696)
Q Consensus 529 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g~ 604 (696)
...++-++.+.|++++|.+..+.+.+ ..|...+....-..+.++|++.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 45678889999999999999998876 346666666666667777877763
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.72 E-value=16 Score=36.29 Aligned_cols=161 Identities=10% Similarity=0.049 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc-CCCCCCc---cchHHHHHHHHhhcCchhHHHHHHHHHHhCCC-----CchHH
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLS-EDVRPDK---FSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-----DDLLV 360 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 360 (696)
.|..+..++-+--++.+++.+-..-.. .|..|.. ....++-.+....+.++.+.+.|+.+.+.... ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 455566666666666666665544332 2233311 22334555666667777777777776653221 23456
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCC-------CCCch------HHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMP-------TRNVV------SWNSMINGYAQNGQDLEALALYDKLLQ----ENLKPD 423 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~ 423 (696)
+.+|...|.+..++++|.-...+.. -.|.. +...|.-++...|....|.+.-++..+ .|-.|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 7777777877777777654433221 12222 122234455556666555555555332 231211
Q ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHh
Q 005454 424 -SFTFVSVLSACLHADLFERGQNHFDSI 450 (696)
Q Consensus 424 -~~t~~~ll~a~~~~g~~~~a~~~~~~m 450 (696)
......+...|...|+.+.|+.-|+..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122333444455566666655555544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.32 E-value=1.1 Score=25.62 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=18.8
Q ss_pred chHHHHHHHHhhcCChhHHHHHHH
Q 005454 527 GPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888888765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.15 E-value=2.8 Score=40.94 Aligned_cols=94 Identities=15% Similarity=0.227 Sum_probs=62.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccC
Q 005454 396 INGYAQNGQDLEALALYDKLLQENLKP-DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474 (696)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 474 (696)
..-|.++|.+++|+..|...+. +.| |.+++..-..+|.+...+..|..-......-. ..-+..|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 5779999999999999998877 567 89999999999999988888776665554310 011223333333334445
Q ss_pred CHHHHHHHHHhC-CCCCCHH
Q 005454 475 DVDKAVDLIKSL-PHKPNSL 493 (696)
Q Consensus 475 ~~~~A~~~~~~~-~~~p~~~ 493 (696)
...+|.+-.+.. ..+|+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH
Confidence 566665555542 3356633
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.11 E-value=34 Score=32.24 Aligned_cols=199 Identities=16% Similarity=0.154 Sum_probs=105.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCC
Q 005454 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373 (696)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 373 (696)
-..+|....++++|..-+.+..+. ...|...| ....+ .+.+..+.+++.+. .--+..++--..+|..+|.
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~-yEnnrslf-hAAKa------yEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-HAAKA------YEQAAMLAKELSKL--SEVVDLYEKASELYVECGS 106 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-HHHHH------HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCC
Confidence 344566666777776665555421 11111111 11111 22333333333321 1123456667778889998
Q ss_pred hHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHhcCCcHHHHHHHHH
Q 005454 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL--KPDS---FTFVSVLSACLHADLFERGQNHFD 448 (696)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~---~t~~~ll~a~~~~g~~~~a~~~~~ 448 (696)
.+.|-..+++.-+ ...+-++++|+++|++...-=. .-+. .-+..+-..+.+...+++|-..|.
T Consensus 107 pdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 107 PDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred cchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 8877766654321 2234567777777776543100 1111 223333445556666777665554
Q ss_pred HhHHh---hCCCCCh-HHHHHHHHHHhccCCHHHHHHHHHh---CCC---CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005454 449 SISAV---HGITPSL-DHYACMINLLGRSSDVDKAVDLIKS---LPH---KPNSLIWSTLLSVCAMKGDIKHGEMAA 515 (696)
Q Consensus 449 ~m~~~---~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~---~~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~ 515 (696)
+-... ..--|+. ..|-..|-.+.-..++..|...++. ++. ..+..+...|+.+| ..||.++...++
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 32110 0111221 3355556666777899999999987 433 23566888888886 567887776664
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.74 E-value=13 Score=33.74 Aligned_cols=60 Identities=13% Similarity=0.193 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCcHHHHHHHHHHhH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDS--FTFVSVLSACLHADLFERGQNHFDSIS 451 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~ 451 (696)
+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+...+++..+..+..++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344444555555555555555555544333332 233444455555555555555544443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.69 E-value=9.2 Score=37.18 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=34.8
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
.++..++..+..+|+.+.+...+++... -+...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455566666666666666666655542 2444566666666666666666666665544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.68 E-value=6.3 Score=30.96 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 404 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
+.-++.+-++.+....+.|+.....+.++||.+.+++..|.++|+.++.+ ...+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 44456677777777788999999999999999999999999999988753 3334456666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.24 E-value=5.1 Score=31.79 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 407 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~--~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC--GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cChHHHHHHHHH
Confidence 566667777777889999999999999999999999999999988643 344447776655
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.18 E-value=18 Score=32.06 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCC
Q 005454 195 NALTDMYAKGGEIDKARWLFDRMNN 219 (696)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~~~~ 219 (696)
.+|.-+-.+.|++..|.+.|..+..
T Consensus 171 EALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHHc
Confidence 3444444455555555555555443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.70 E-value=7.3 Score=37.87 Aligned_cols=61 Identities=15% Similarity=0.046 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
..+.|-.++.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..=++...+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4566777889999999999999999999999999999999999999999999998877765
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.67 E-value=17 Score=38.78 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=95.3
Q ss_pred cCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 005454 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282 (696)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 282 (696)
-.|+++.|..++..+++ ..-+.++..+.+.|..++|+++ .+|...- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 35778888777766653 2345566777778888888765 2332221 1224577888888877654
Q ss_pred ccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHH
Q 005454 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362 (696)
Q Consensus 283 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 362 (696)
. .+..-|..|..+....+++..|.+-|..... |..|+-.+...|+-+....+-....+.|.. |
T Consensus 663 ~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N 725 (794)
T KOG0276|consen 663 A--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------N 725 (794)
T ss_pred h--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------c
Confidence 3 4567799999999999999999998887664 455666666677766555555555554432 2
Q ss_pred HHHhhHHhcCChHHHHHHHhc
Q 005454 363 ALIDMYCKCGVTDDAWTVFNM 383 (696)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~ 383 (696)
....+|...|+++++.+++.+
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHHh
Confidence 223345555666666555543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=83.64 E-value=81 Score=35.34 Aligned_cols=132 Identities=9% Similarity=0.027 Sum_probs=64.9
Q ss_pred HcCCCHHHHHHHHHhcCCCChh---HHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcCCHHHHH
Q 005454 202 AKGGEIDKARWLFDRMNNRNLV---SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP-DEVTVSNILGACFQTGRIDDAG 277 (696)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~ 277 (696)
.+.|++..+.++...+...... .|..+..... ...+++....++ +..--| ....-...+..+.+.+++....
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~---~~~~~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLM-NQPAVQVTNFIR---ANPTLPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccc-cCCHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHccCHHHHH
Confidence 3567777777777666542222 2332222111 112333333322 221111 1122223334456677777777
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCc
Q 005454 278 RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339 (696)
Q Consensus 278 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 339 (696)
.++.. ...+...-.....+....|+.++|......+-..|. ..+.....++..+.+.|.+
T Consensus 120 ~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 120 AFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCC
Confidence 63322 234444445566677778887777777777655442 2344555666666554443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.21 E-value=36 Score=30.96 Aligned_cols=114 Identities=13% Similarity=0.174 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH--HHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHH-----HHHHHHhccCCHHHH
Q 005454 407 EALALYDKLLQENLKPDSFTFVSV--LSACLHADLFERGQNHFDSISAVHGITPSLDHYA-----CMINLLGRSSDVDKA 479 (696)
Q Consensus 407 ~A~~l~~~m~~~g~~p~~~t~~~l--l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A 479 (696)
+.....+++...+-+....++..| .......|++++|...++..... |.-+.+. .|.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 455555566554322222233332 34566788888888877765531 2223333 344567788888999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 480 VDLIKSLPHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 480 ~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
+..++....+. .......-...+...|+-++|...|++.++.++.
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 88888765331 1222333356777888888999999888887743
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.10 E-value=2.6 Score=25.56 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
.|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666777777777777777777766
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=82.90 E-value=25 Score=34.90 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcCCc--HHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 005454 406 LEALALYDKLLQENLKPDSF--TFVSVLSACLHADL--FERGQNHFDSISAVHGITPSLDHYACMINLL 470 (696)
Q Consensus 406 ~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 470 (696)
+.+...|+.+.+.|+..+.. ....++..+..... +..+.++++.+.+. ++++...+|..+.-+-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 45677788888877766543 33333333322222 45778888888774 8888888877665443
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.83 E-value=12 Score=29.60 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=39.1
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 005454 265 GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318 (696)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 318 (696)
..+...|++++|..+.+.+..||...|-++... +.|..+++..-+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 346788899999999888888898888877654 5666676766776776654
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.62 E-value=46 Score=31.77 Aligned_cols=216 Identities=17% Similarity=0.178 Sum_probs=107.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhccC---CCC--CCccchHHHHHHHHhhcCchhHHHHHHHHHHh-----CCCCchHHHHH
Q 005454 294 MIVGYTQNGKEEDALILFNEMLSE---DVR--PDKFSISSVVSSCAKLASLYHGQVVHGKAVVL-----GVDDDLLVSSA 363 (696)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~---g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ 363 (696)
+|..+.+.|++++.++.|.+|+.- .+. -.....++++.-.+...+.+....+++.-++. +-..=..+-+-
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 455555555555555555555321 111 12233444555444444444444444332221 00000112234
Q ss_pred HHhhHHhcCChHHHHHHHhcCCC------------C---CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005454 364 LIDMYCKCGVTDDAWTVFNMMPT------------R---NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~~------------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 428 (696)
|...|...|.+..-.++++.+.. + -...|..=|..|....+-.+...+|++.+...-........
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm 230 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM 230 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 55566666666666666554431 1 12245556777777777777778888766532222223344
Q ss_pred HHHHHHh-----cCCcHHHHHHHHHHhHHhhCCC--CCh---HHHHHHHHHHhccC----CHHHHHHHHHhCCCCCCHHH
Q 005454 429 SVLSACL-----HADLFERGQNHFDSISAVHGIT--PSL---DHYACMINLLGRSS----DVDKAVDLIKSLPHKPNSLI 494 (696)
Q Consensus 429 ~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~--p~~---~~~~~li~~~~~~g----~~~~A~~~~~~~~~~p~~~~ 494 (696)
.+++-|. +.|.+++|..-|-.+.+.+.-. |.. --|-.|.+++.+.| +-++| +-....|....
T Consensus 231 GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA----KPyKNdPEIlA 306 (440)
T KOG1464|consen 231 GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA----KPYKNDPEILA 306 (440)
T ss_pred hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc----CCCCCCHHHHH
Confidence 5666664 5678888876555554434322 222 23555666776665 22222 11223466778
Q ss_pred HHHHHHHHHhcCChHHHHHH
Q 005454 495 WSTLLSVCAMKGDIKHGEMA 514 (696)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~ 514 (696)
...|+.+|.. +++.+-+++
T Consensus 307 MTnlv~aYQ~-NdI~eFE~I 325 (440)
T KOG1464|consen 307 MTNLVAAYQN-NDIIEFERI 325 (440)
T ss_pred HHHHHHHHhc-ccHHHHHHH
Confidence 8888888854 444443333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.25 E-value=16 Score=33.08 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=60.1
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCCCCC------chHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHH
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRN------VVSWNSMINGYAQNGQDLEALALYDKLLQE---NLKPDSFTFVS 429 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ 429 (696)
..+..+.+.|++.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+.... |-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456678899999999999999999987543 235677788888889999988887776542 22222222112
Q ss_pred HHHH--HhcCCcHHHHHHHHHHhH
Q 005454 430 VLSA--CLHADLFERGQNHFDSIS 451 (696)
Q Consensus 430 ll~a--~~~~g~~~~a~~~~~~m~ 451 (696)
+..+ +...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2221 234556666666554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.23 E-value=2.2 Score=27.38 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=22.2
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 527 GPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567888999999999999999887754
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=82.16 E-value=2.8 Score=28.99 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=26.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHH
Q 005454 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
.+.-++.+.|+++.|.+..+.+++++|+|..+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4556788999999999999999999998866543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.41 E-value=55 Score=31.82 Aligned_cols=59 Identities=10% Similarity=0.040 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 496 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+.....|...|.+.+|.++.++++.++|-+...+-.|.+.|+..|+--+|.+-++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34456788999999999999999999999999999999999999998888888888754
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.40 E-value=2.8 Score=25.16 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=13.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
..++...|+.++|...++++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34444555555555555555555553
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.87 E-value=12 Score=36.49 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=68.9
Q ss_pred CCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-C--------CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005454 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-R--------NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423 (696)
Q Consensus 353 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (696)
|......+...+++.-....+++++...+-++.. | ..++|-.+ +..-++++++.++..=++-|+.||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccc
Confidence 3444445555666666667788888887766652 2 22233322 233467789999988899999999
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhHH
Q 005454 424 SFTFVSVLSACLHADLFERGQNHFDSISA 452 (696)
Q Consensus 424 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 452 (696)
..|+..++..+.+.+++.+|.++.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999887776655
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=80.60 E-value=68 Score=32.95 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=50.7
Q ss_pred CHHHHHHH---HHHHHhcCChHHHHHHHHHHHhcCCC-CCchHHHHHHHHh-hcCChhHHHHHHHHhhh
Q 005454 491 NSLIWSTL---LSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYA-ACGRWEDVASIRSSMKS 554 (696)
Q Consensus 491 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 554 (696)
|...|.+| +..+.+.|-+..|.+..+-++.++|. ||..-...++.|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44455554 55678899999999999999999998 8888888888876 57788888888876654
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=80.30 E-value=1.3e+02 Score=35.48 Aligned_cols=239 Identities=13% Similarity=0.015 Sum_probs=109.0
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCH-HHHHHHHHhccCCChh
Q 005454 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI-DDAGRLFHVIKEKDNV 289 (696)
Q Consensus 211 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~ 289 (696)
..+...+.++|...-...+..+.+.+.. ++...+..+... +|...-...+.++.+.+.. .....+...+..+|..
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~ 699 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPV 699 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHH
Confidence 3455555567777777777777776653 355555555432 3433333444444443221 1122233334445665
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHH
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 369 (696)
.-...+..+...+..+ .. .+-+++. .+|...-...+.++...+..+. + ...--+++..+-...+.++.
T Consensus 700 VR~~A~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l----~~~l~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 700 VRAAALDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES---V----AGAATDENREVRIAVAKGLA 767 (897)
T ss_pred HHHHHHHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH---H----HHHhcCCCHHHHHHHHHHHH
Confidence 5555556655443221 12 2222332 3444444444555554433221 1 11222345555555555555
Q ss_pred hcCChHH-H-HHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 005454 370 KCGVTDD-A-WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447 (696)
Q Consensus 370 ~~g~~~~-A-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 447 (696)
..+..+. + ..+...+.++|...-.+.+.++...|....+...+..+.+ .+|...-...+.++...+. +++...+
T Consensus 768 ~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred HhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHH
Confidence 5554332 1 2223333455555555566666666655444333444433 3344444444555554443 2333333
Q ss_pred HHhHHhhCCCCChHHHHHHHHHHhcc
Q 005454 448 DSISAVHGITPSLDHYACMINLLGRS 473 (696)
Q Consensus 448 ~~m~~~~~~~p~~~~~~~li~~~~~~ 473 (696)
..+.+ .|+...-...+.++++.
T Consensus 844 ~~~L~----D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 844 VEALT----DPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHhc----CCCHHHHHHHHHHHhcc
Confidence 33332 24444444444555443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 65.6 bits (158), Expect = 4e-11
Identities = 23/203 (11%), Positives = 60/203 (29%), Gaps = 7/203 (3%)
Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
+ A + ++ P + L L L + G+ L G A
Sbjct: 73 KQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLA 132
Query: 197 LTDMYAKGGEIDKARWLFDRMNNR-------NLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
++ A L + + L +N ++ G+ + G K+ + + ++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
GL PD ++ + L + + ++ + + + ++ ++
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 310 LFNEMLSEDVRPDKFSISSVVSS 332
+ V +S
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTS 275
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.1 bits (141), Expect = 4e-09
Identities = 30/218 (13%), Positives = 62/218 (28%), Gaps = 10/218 (4%)
Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
++ A L + P + ++ ++ SL Q G+ +
Sbjct: 72 SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL 131
Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTR-------NVVSWNSMINGYAQNGQDLEALALYDKL 415
A A + + + + +N+++ G+A+ G E + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR--- 472
L PD ++ + L D + G+ A +++ R
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
V K P P + S LL K
Sbjct: 252 LKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.4 bits (129), Expect = 1e-07
Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 43/302 (14%)
Query: 1 MKAKHKLRQAIDTLY-SRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT 59
+ + Q + Q+ +A T+ + R+ ++A L+ P
Sbjct: 34 KRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEE 93
Query: 60 FLHNRLLHFYAKSGKLFYARDLFDKMPLR----DIISWNALLSAHARSGSV-------QD 108
L RLL L + + A + +
Sbjct: 94 QLA-RLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 109 LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168
K + YN + G+A +G +E + V ++ P ++ +AL
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG- 211
Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
R+ + + L M +G ++ + ++
Sbjct: 212 ----RQDQDAGT------------IERCLEQMSQEGLKLQA-------------LFTAVL 242
Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
+S + K + L P V S +L + +L +K
Sbjct: 243 LSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
Query: 289 VC 290
+
Sbjct: 303 LF 304
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.0 bits (115), Expect = 6e-06
Identities = 11/97 (11%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 246 QEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK-------DNVCWTTMIVGY 298
+ L+ + + C T ++ A L V + + +++G+
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
+ G ++ + + + + PD S ++ + +
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 3e-09
Identities = 88/602 (14%), Positives = 156/602 (25%), Gaps = 195/602 (32%)
Query: 147 MQKDRFEPTDYTHV----SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
M K + H+ A++ +L KQ ++V FV L Y
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ--EEMV------QKFVEEVLRINY- 91
Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGY------LKNGQPKKC------IDLFQEMQ- 249
++L + ++M Y L N + + +++
Sbjct: 92 --------KFLMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 250 -LLGLNPDE-VTVSNILGACFQTGR---IDDAGRLFHVIKEKDN-VCWTTMIVGYTQNGK 303
LL L P + V + +LG+ G+ D + V + D + W + N
Sbjct: 143 ALLELRPAKNVLIDGVLGS----GKTWVALDVCLSYKVQCKMDFKIFWLNL--K---NCN 193
Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD------D 357
+ ++ EML ++ + + H + L +
Sbjct: 194 SPETVL---EMLQ--------------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 358 LLVSSALIDMYCKC-GVTDDAWT-----VFN-----MMPTRNVVSWNSMINGYAQNGQDL 406
LL S Y C V + FN ++ TR Q L
Sbjct: 237 LLKSK----PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF-----------KQVTDFL 281
Query: 407 EALALYDKLLQENLKPDSFT---FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
A L + T S+L L + L
Sbjct: 282 SAATTTHISLDHHSMT--LTPDEVKSLLLKYLDCRPQD------------------LPRE 321
Query: 464 ACMINLLGRSSDVDKAVDLI-KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
N + +I +S+ W V K + L LE
Sbjct: 322 VLTTNPR--------RLSIIAESIRDGLA--TWDNWKHV----NCDKLTTIIESSLNVLE 367
Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
P M+ S+ + I + + D
Sbjct: 368 PAE------YRKMFDRL-----------SVFPPSAH---------IPTILLSLIWFDVIK 401
Query: 583 PETEIIYEELSK--LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL------A 634
+ ++ +L K L++K + + + E KVK + AL
Sbjct: 402 SDVMVVVNKLHKYSLVEK-----QPKESTISIPSIYLELKVKL----ENEYALHRSIVDH 452
Query: 635 YCLIKK--PHGVTPIRI-----------MKNIRVCGDCHLFMKFASDI--IGRTIILRDS 679
Y + K + P + +KNI LF D + + I +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 680 NR 681
Sbjct: 513 AW 514
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 41/331 (12%), Positives = 95/331 (28%), Gaps = 47/331 (14%)
Query: 124 YNTAIAGFANKGFSREALQVFSR----MQKDRFEPTDYTHVSALNACAQLL--------- 170
N KG + AL+ + +Q++ + + + A +
Sbjct: 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDV 113
Query: 171 --DLRRGKQIHGKI--VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR---MNNRNLV 223
+ + K + K + T + G + ++A+ F++ +N
Sbjct: 114 QIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173
Query: 224 SW-NLMISGYL--KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ-----TGRIDD 275
L I+ Y + ID + Q + LNPD + +L +
Sbjct: 174 FTSGLAIASYRLDNWPPSQNAIDPLR--QAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231
Query: 276 AGRLF---HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
+L + Y + + + A+ L + L P+ +
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHC---- 285
Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
++ Y +V + ++ + L+++
Sbjct: 286 --QIGCCYRAKVFQVMNLR---ENGMYGKRKLLELIGHA--VAHLKKADEANDN-LFRVC 337
Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPD 423
+ + + +A Q EA + K + L P
Sbjct: 338 SILASLHALADQYEEAEYYFQKEFSKELTPV 368
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 39/345 (11%), Positives = 83/345 (24%), Gaps = 30/345 (8%)
Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT-GRID 274
+ +V+ G + + + Q GL P++V G Q +
Sbjct: 134 GLTPEQVVAIASHDGGKQALETVQALLPVLC--QAHGLTPEQVVAIASNGGGKQALETVQ 191
Query: 275 DAGRLF---HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
+ H + + V + G + L + + + P + V
Sbjct: 192 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQ------VV 243
Query: 332 SCAKLASLYHGQVVHGKAV-----VLGVD-DDLLVSSALIDMYCKCGVTDDAWTVFN--- 382
+ A + + G+ ++ ++ V
Sbjct: 244 AIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAH 303
Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
+ + VV+ S G L + + L P ++ A E
Sbjct: 304 GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASHDGGKQA--LET 359
Query: 443 GQNHFDSISAVHGITPSLDH-YACMINLLGRSSDVDKAV-DLIKSLPHKPN-SLIWSTLL 499
Q + HG+TP A V + + L ++ P + ++
Sbjct: 360 VQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD 419
Query: 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
++ L P A
Sbjct: 420 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVA 464
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 4e-04
Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 49/201 (24%)
Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG-ACFQTGRIDDAGRLF-HVIKEKDNV 289
+ G + QL PD V +L FQ R+D + IK+ +
Sbjct: 9 EYQAGDFEAAERHCM--QLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66
Query: 290 --CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
++ + Y + G+ ++A+ + L ++PD Y
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALR--LKPD-------------FIDGYIN----- 106
Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN----MMPTRNVVSWNSMINGYAQNG 403
L G + A + P + + N G
Sbjct: 107 ----LAA------------ALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALG 149
Query: 404 QDLEALALYDKLLQENLKPDS 424
+ EA A Y K ++ +P+
Sbjct: 150 RLEEAKACYLKAIE--TQPNF 168
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 47/330 (14%), Positives = 100/330 (30%), Gaps = 39/330 (11%)
Query: 227 LMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE- 285
L L Q K + + ++L + + + TG A L
Sbjct: 89 LWRHDALMQQQYKCAAFVGE--KVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY 146
Query: 286 -KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL-ASLYHGQ 343
+ + C + + AL L E + + KL AS+ + +
Sbjct: 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLR 206
Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN----MMPTRNVVSWNSMINGY 399
G+ Y D A + + +++ +++ +
Sbjct: 207 ---GQV------------------YTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNH 244
Query: 400 AQNGQDLEALAL---YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
+ L L Y +E+ ++ L+ H D R +++ SI+ +
Sbjct: 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE-- 302
Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLI-KSLPHKPNSL-IWSTLLSVCAMKGDIKHGEMA 514
S D C + L S + + K L P +L ++ L+ G+ +
Sbjct: 303 -KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLI 361
Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWED 544
+ L + P A ++ + Y + +
Sbjct: 362 SNDLVDRHPEKAVTWLAVGIYYLCVNKISE 391
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 696 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.62 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.56 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.51 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.46 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.44 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.44 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.44 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.42 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.37 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.36 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.34 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.32 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.3 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.29 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.25 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.23 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.23 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.23 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.19 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.17 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.17 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.16 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.12 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.02 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.01 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.98 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.95 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.95 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.94 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.93 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.9 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.88 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.88 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.87 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.87 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.84 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.84 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.82 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.81 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.79 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.78 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.7 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.68 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.68 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.68 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.67 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.66 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.64 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.64 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.63 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.63 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.61 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.6 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.58 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.56 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.56 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.55 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.54 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.54 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.54 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.52 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.52 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.51 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.5 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.48 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.48 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.47 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.46 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.46 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.46 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.45 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.39 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.39 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.37 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.35 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.32 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.32 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.31 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.3 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.29 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.29 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.28 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.25 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.24 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.24 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.24 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.24 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.23 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.22 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.22 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.22 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.21 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.2 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.2 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.19 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.18 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.18 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.17 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.16 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.15 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.15 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.11 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.1 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.09 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.09 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.09 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.06 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.05 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.05 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.02 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.99 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.99 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.98 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.96 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.95 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.91 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.91 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.89 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.89 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.86 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.85 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.84 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.84 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.83 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.82 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.82 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.81 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.81 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.8 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.78 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.78 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.73 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.71 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.64 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.61 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.61 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.58 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.47 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.46 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.42 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.4 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.22 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.18 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.12 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.11 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.08 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.07 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.93 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.85 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.82 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.77 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.76 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.69 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.57 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.55 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.53 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.22 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.19 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.05 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.84 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.73 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.6 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.39 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.37 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.07 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.06 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.17 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.61 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.52 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.07 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.0 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.52 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.06 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.01 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.97 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 90.98 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.89 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 88.94 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.81 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 87.65 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.54 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 86.31 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.28 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.46 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.41 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.22 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.04 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.58 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.56 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 81.78 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.26 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 81.18 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 80.89 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 80.33 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 80.32 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.09 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=366.93 Aligned_cols=445 Identities=11% Similarity=-0.020 Sum_probs=364.6
Q ss_pred HHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHH
Q 005454 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179 (696)
Q Consensus 100 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 179 (696)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45566777777777777777777888888888888888888888888774 3567777777888888888888888887
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC-------------------ChhHHHHHHHHHHhCCCchH
Q 005454 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR-------------------NLVSWNLMISGYLKNGQPKK 240 (696)
Q Consensus 180 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 240 (696)
..+... +++..+++.++.+|.++|++++|.++|+++... ++.+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 776543 567778888888888888888888888854433 36778888888888888888
Q ss_pred HHHHHHHHHHcCCCCCcc-h--------------------------------------HHHHHHHHHhcCCHHHHHHHHH
Q 005454 241 CIDLFQEMQLLGLNPDEV-T--------------------------------------VSNILGACFQTGRIDDAGRLFH 281 (696)
Q Consensus 241 A~~l~~~m~~~g~~p~~~-t--------------------------------------~~~ll~~~~~~g~~~~A~~~~~ 281 (696)
|+++|++|.+.+ |+.. . |+.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 888888887754 3322 2 2233555778899999999999
Q ss_pred hccC--CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchH
Q 005454 282 VIKE--KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359 (696)
Q Consensus 282 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 359 (696)
++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..++..+.+... .+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHH
Confidence 9987 799999999999999999999999999999764 34778899999999999999999999999997654 4788
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 436 (696)
+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999875 4567899999999999999999999999999864 4578899999999999
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCC
Q 005454 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-------PHKPN--SLIWSTLLSVCAMKGD 507 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~ 507 (696)
.|++++|.++|+.+.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999874 3456889999999999999999999999876 45677 7899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 508 IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 508 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
+++|...++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999773
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=356.18 Aligned_cols=475 Identities=10% Similarity=-0.007 Sum_probs=332.9
Q ss_pred CChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccC--CCCCcchHHHHHH
Q 005454 21 ATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM--PLRDIISWNALLS 98 (696)
Q Consensus 21 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~li~ 98 (696)
++...|..+++.+. ..++...|...+..+....|++ ..+..++.+|.+.|++++|..+|+++ ..+++.+++.++.
T Consensus 82 ~~~~~~~~~~~~~~--~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDAL--MQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 45566777777776 5667777777777666544422 55566777777777777777777776 3456777777777
Q ss_pred HHHccCChhHHHHHHhcCC-CC------------------CcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcch-
Q 005454 99 AHARSGSVQDLRALFDKMP-IR------------------DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT- 158 (696)
Q Consensus 99 ~~~~~g~~~~A~~~f~~~~-~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t- 158 (696)
+|.++|++++|.++|+++. .. +..+|+.++.+|.+.|++++|+++|++|.+. .|+..+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 236 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV--DAKCYEA 236 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CchhhHH
Confidence 7777777777777777433 22 3567777777777777777777777777654 344332
Q ss_pred HHHHHHHHHccCChH--HHHHH-HHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHHHHHHHHH
Q 005454 159 HVSALNACAQLLDLR--RGKQI-HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN--RNLVSWNLMISGYL 233 (696)
Q Consensus 159 ~~~ll~~~~~~~~~~--~a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 233 (696)
+..+...+...+..+ .+..+ +..+...+..+...+++.++.+|.+.|++++|.++|+++.. ++..+|+.++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 222222221111111 11111 33334444444455566667777777777777777777776 67777777777777
Q ss_pred hCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHH
Q 005454 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALIL 310 (696)
Q Consensus 234 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 310 (696)
+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|+.++|..+|+.+. +.+..+|+.++..|.+.|++++|.++
T Consensus 317 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 7777777777777777654 2355666666666666666666666666554 23455566666666666666666666
Q ss_pred HHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CC
Q 005454 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TR 387 (696)
Q Consensus 311 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~ 387 (696)
|+++.+ ... .+..+++.++.+|.+.|++++|.++|+++. ..
T Consensus 396 ~~~~~~-----------------------------------~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (597)
T 2xpi_A 396 FSKSST-----------------------------------MDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439 (597)
T ss_dssp HHHHHH-----------------------------------HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHH-----------------------------------hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 666553 221 245567777777777777777777777654 34
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhh---CCCCC--hHH
Q 005454 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH---GITPS--LDH 462 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~ 462 (696)
+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..++..+.+.|++++|.++|+++.+.. +..|+ ..+
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 77888888899999999999999999988753 4467888889999999999999999999887642 55777 689
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 463 YACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
|..++.+|.+.|++++|.+.++++.. .| +..+|..+..+|...|++++|...++++++++|+++.++..|+++|..
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999999999987532 34 788999999999999999999999999999999999999999998864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-25 Score=234.03 Aligned_cols=370 Identities=14% Similarity=0.157 Sum_probs=272.4
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 005454 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDY-THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205 (696)
Q Consensus 127 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 205 (696)
+...+.+.|++++|++.+.++.+. .|+.. .+..+...+...|+++.|...+...++.. +.+...+..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345667788888888888887764 45544 44445555667788888888887777664 446677778888888888
Q ss_pred CHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHH
Q 005454 206 EIDKARWLFDRMNN--R-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV-TVSNILGACFQTGRIDDAGRLFH 281 (696)
Q Consensus 206 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~ 281 (696)
++++|...|+++.. | +..+|..+...+.+.|++++|++.|+++.+.. |+.. .+..+...+...|++++|...|+
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88888888877653 3 34567777778888888888888887777643 4433 34444455555666666666665
Q ss_pred hcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCch
Q 005454 282 VIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358 (696)
Q Consensus 282 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 358 (696)
++. +.+..+|..+...+...|++++|+..|+++.+ ..+ .+.
T Consensus 160 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------------------------------~~p-~~~ 203 (388)
T 1w3b_A 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT-----------------------------------LDP-NFL 203 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-----------------------------------HCT-TCH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------------------------cCC-CcH
Confidence 554 22344555555556666666666665555554 332 134
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSAC 434 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 434 (696)
..+..+...+...|++++|...|++.. +.+..+|..+...|...|++++|++.|+++.+. .|+ ..++..+..++
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHH
Confidence 555666667777777777777776543 335678888889999999999999999999884 444 67888888899
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHH
Q 005454 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGE 512 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~ 512 (696)
...|++++|...|+.+.+. .+++...+..++..+.+.|++++|.+.++++.. .| +..+|..+..++...|++++|.
T Consensus 282 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999873 356678899999999999999999999988543 34 5678999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 005454 513 MAARHLFELEPINAGPYIMLSNMYAACGR 541 (696)
Q Consensus 513 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (696)
..++++++++|.++.+|..++.+|...|+
T Consensus 360 ~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 360 MHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-25 Score=229.00 Aligned_cols=347 Identities=14% Similarity=0.070 Sum_probs=267.5
Q ss_pred HHHcCCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 005454 200 MYAKGGEIDKARWLFDRMNN--R-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA 276 (696)
Q Consensus 200 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 276 (696)
.+.+.|++++|.+.++++.. | +...+..+...+.+.|++++|...++...... +.+..++..+...|.+.|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 34445555555555544432 2 23344444455555555555555555554432 33445566666666666666666
Q ss_pred HHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCcc-chHHHHHHHHhhcCchhHHHHHHHHHHh
Q 005454 277 GRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF-SISSVVSSCAKLASLYHGQVVHGKAVVL 352 (696)
Q Consensus 277 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 352 (696)
...|+++. +.+...|..+..++...|++++|++.|+++.+. .|+.. .+..+...+...|++++|...+..+.+.
T Consensus 87 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 66666554 234456777888888888888888888888763 45543 4455666777788888888888888877
Q ss_pred CCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHH
Q 005454 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFV 428 (696)
Q Consensus 353 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 428 (696)
.+. +..++..+...|.+.|++++|...|+++. +.+...|..+...+...|++++|+..|++.... .|+ ..++.
T Consensus 165 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 241 (388)
T 1w3b_A 165 QPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHG 241 (388)
T ss_dssp CTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHH
Confidence 543 67888999999999999999999999876 345678999999999999999999999999884 554 67888
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC
Q 005454 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKG 506 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g 506 (696)
.+..++...|++++|...|+.+.+. -+.+...|..++..|.+.|++++|.+.++++.. +++..+|..+...+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Confidence 9999999999999999999999863 233467899999999999999999999987532 457789999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999876
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=247.79 Aligned_cols=183 Identities=11% Similarity=0.177 Sum_probs=160.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcC---------chhHHHHHHHHHHhCCCCchHH
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS---------LYHGQVVHGKAVVLGVDDDLLV 360 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 360 (696)
.++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|+.|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4677888888888888888899999888899999999999988876554 5778889999999999999999
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCC----CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMP----TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 436 (696)
|++||++|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999998886 578899999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc
Q 005454 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 473 (696)
.|++++|.++|++|.+. +..|+..+|+.+++.|...
T Consensus 188 ~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999874 9999999999998888653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-27 Score=248.55 Aligned_cols=193 Identities=12% Similarity=0.124 Sum_probs=174.7
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 005454 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302 (696)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 302 (696)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+...++ ...+
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~----------------------~~~~ 84 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES----------------------SPNP 84 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----------------------SCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh----------------------hhcc
Confidence 458889999999999999999999999999999999999999998887653321 2345
Q ss_pred ChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHh
Q 005454 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382 (696)
Q Consensus 303 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 382 (696)
..++|.++|++|...|+.||..||+++|.+|++.|+++.|.++++.|.+.|+.||..+|++||.+|++.|++++|.++|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC----CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 005454 383 MMP----TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437 (696)
Q Consensus 383 ~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 437 (696)
+|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..+...
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 886 5899999999999999999999999999999999999999999999988753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-22 Score=218.69 Aligned_cols=425 Identities=10% Similarity=0.014 Sum_probs=291.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 005454 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202 (696)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 202 (696)
.|..+...+.+.|++++|+..|+++.+.. ||..++..+..++...|+++.|...+..+++.+ +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 44555566666777777777777766543 566666666666667777777777777666654 234556666677777
Q ss_pred cCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH---HHhcCCHHHH
Q 005454 203 KGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA---CFQTGRIDDA 276 (696)
Q Consensus 203 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~---~~~~g~~~~A 276 (696)
+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-... .........+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 77777777777666543 22223333333333322222222222222221111111111110000 0011111111
Q ss_pred HHHHHhcc---------CC-ChhHHHHHHHHHHh---cCChhHHHHHHHHhcc-----CCCCCC--------ccchHHHH
Q 005454 277 GRLFHVIK---------EK-DNVCWTTMIVGYTQ---NGKEEDALILFNEMLS-----EDVRPD--------KFSISSVV 330 (696)
Q Consensus 277 ~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p~--------~~t~~~ll 330 (696)
...+.... .+ +...+......+.. .|++++|+..|+++.. ....|+ ..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 22222211 11 23444445554554 8999999999999887 322232 34566777
Q ss_pred HHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHH
Q 005454 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLE 407 (696)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 407 (696)
..+...|+++.|...+..+.+.... ...+..+...|...|++++|...|+.+. +.+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 7888999999999999999988765 8888899999999999999999998765 3467789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC
Q 005454 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487 (696)
Q Consensus 408 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 487 (696)
|+..|++..+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++.
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999853 334678888889999999999999999999874 23456788899999999999999999998752
Q ss_pred C----CCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 488 H----KPN----SLIWSTLLSVCAM---KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 488 ~----~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
. .|+ ..+|..+...+.. .|++++|...++++++.+|.++.++..++.+|...|++++|...+++..+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2 222 3488999999999 999999999999999999999999999999999999999999999988763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-21 Score=213.44 Aligned_cols=426 Identities=10% Similarity=0.015 Sum_probs=312.5
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 005454 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200 (696)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 200 (696)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...+..+++.+ +.+...+..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456677777888888888888888877652 3345567777777788888888888888887775 3367778888888
Q ss_pred HHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcC--CCCCcchHHHHHHHHHhcCCHHHHHH
Q 005454 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG--LNPDEVTVSNILGACFQTGRIDDAGR 278 (696)
Q Consensus 201 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~A~~ 278 (696)
|...|++++|...|+.+. .+....+..+..+...+...+|...++++.... ..+........+..+....+.+.+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 888899999998886443 222233334455556666678888888875431 11111222344455667777777777
Q ss_pred HHHhccCCChh---HHHHHHHHHHhc--------CChhHHHHHHHHhccCCCCCCc--------cchHHHHHHHHhhcCc
Q 005454 279 LFHVIKEKDNV---CWTTMIVGYTQN--------GKEEDALILFNEMLSEDVRPDK--------FSISSVVSSCAKLASL 339 (696)
Q Consensus 279 ~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~~~~~~~~~ 339 (696)
.+......+.. .+..+...+... |++++|+.+|+++.+. .|+. .++..+...+...|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 77666655443 344444333322 4789999999998864 3442 2355566677788999
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005454 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLL 416 (696)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 416 (696)
+.|...+..+.+.... ...+..+...|...|++++|...|+.+. +.+..+|..+...|...|++++|+..|++..
T Consensus 260 ~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 260 LDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999987644 7788889999999999999999998765 3467789999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC----CC--
Q 005454 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH----KP-- 490 (696)
Q Consensus 417 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~p-- 490 (696)
+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+...|...|++++|.+.++++.. .+
T Consensus 338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 853 334578888889999999999999999999874 244567888999999999999999999987421 11
Q ss_pred --CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 491 --NSLIWSTLLSVCAMK----------GDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 491 --~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
....+..+...+... |++++|...++++++.+|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 222344555667777 999999999999999999999999999999999999999999999987633
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.9e-22 Score=213.76 Aligned_cols=241 Identities=11% Similarity=-0.008 Sum_probs=189.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhh
Q 005454 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367 (696)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 367 (696)
...|..+...+...|++++|+..|+++.... |+...+..+...+...|+++.|...+..+.+.... +..++..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 313 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHH
Confidence 3456677777788888888888888877643 33666667777777888888888888887776543 56677888888
Q ss_pred HHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 005454 368 YCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444 (696)
Q Consensus 368 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 444 (696)
|...|++++|...|+.+. +.+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|.
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 888889988888888654 3466788888899999999999999999988742 334577888888899999999999
Q ss_pred HHHHHhHHhhCCCCC----hHHHHHHHHHHhc---cCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 005454 445 NHFDSISAVHGITPS----LDHYACMINLLGR---SSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAA 515 (696)
Q Consensus 445 ~~~~~m~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 515 (696)
.+++.+.+...-.|+ ...+..+...+.+ .|++++|.+.++++.. .| +..+|..+...+...|++++|...+
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999988764322233 3488889999999 9999999999987432 33 5678899999999999999999999
Q ss_pred HHHHhcCCCCCchHHHH
Q 005454 516 RHLFELEPINAGPYIML 532 (696)
Q Consensus 516 ~~~~~~~p~~~~~~~~l 532 (696)
+++++++|.++..+..+
T Consensus 473 ~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 473 EESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHCSSHHHHHHHH
T ss_pred HHHHHhccccHHHHHHH
Confidence 99999999988776665
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-21 Score=206.02 Aligned_cols=333 Identities=13% Similarity=0.117 Sum_probs=243.9
Q ss_pred CchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005454 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265 (696)
Q Consensus 189 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 265 (696)
.+...+..+...|.+.|++++|..+|+++.. .+..+|..+...|...|++++|+..|+++.+.+ +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 3566677777777777777777777776643 355667777777777777777777777776653 223445555555
Q ss_pred HHHhcCCHHHHHHHHHhccCCC---h---hHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCc
Q 005454 266 ACFQTGRIDDAGRLFHVIKEKD---N---VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339 (696)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 339 (696)
.|.+.|++++|...|+.+...+ . ..|..++..+...+ +..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCH
Confidence 5666666666666665554322 1 33444433311111 11123345667777
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005454 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLL 416 (696)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 416 (696)
+.|...+..+.+... .+..++..++.+|.+.|++++|...|+.+. +.+..+|..++..|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 778877777777654 367788888899999999999999988775 4577899999999999999999999999998
Q ss_pred HCCCCCCHH-HHHHH------------HHHHhcCCcHHHHHHHHHHhHHhhCCCCC-----hHHHHHHHHHHhccCCHHH
Q 005454 417 QENLKPDSF-TFVSV------------LSACLHADLFERGQNHFDSISAVHGITPS-----LDHYACMINLLGRSSDVDK 478 (696)
Q Consensus 417 ~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~ 478 (696)
+ ..|+.. .+..+ ...+.+.|++++|..+|+.+.+. .|+ ..+|..++.++.+.|++++
T Consensus 239 ~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 239 K--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred H--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 7 455543 33333 67889999999999999999874 344 4588999999999999999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH------------HHHhhcC----
Q 005454 479 AVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS------------NMYAACG---- 540 (696)
Q Consensus 479 A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g---- 540 (696)
|.+.++++. ..| +..+|..+..+|...|++++|...++++++++|.++.++..++ +.|...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 999998853 344 6789999999999999999999999999999999999999999 5677777
Q ss_pred -ChhHHHHHHHH
Q 005454 541 -RWEDVASIRSS 551 (696)
Q Consensus 541 -~~~~A~~~~~~ 551 (696)
+.+++.+.+++
T Consensus 394 ~~~~~~~~~y~~ 405 (450)
T 2y4t_A 394 AKKQEIIKAYRK 405 (450)
T ss_dssp CCTTHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 45566666654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-20 Score=199.47 Aligned_cols=376 Identities=11% Similarity=0.019 Sum_probs=240.8
Q ss_pred HHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 005454 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219 (696)
Q Consensus 140 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 219 (696)
+...+.+.... -+.+...+..+...+...|++++|..++..+++.. +.+..++..+..+|...|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444444433 13455678888899999999999999999999875 44788999999999999999999999999865
Q ss_pred ---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc----chHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHH
Q 005454 220 ---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE----VTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWT 292 (696)
Q Consensus 220 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 292 (696)
.+..+|..+...|.+.|++++|.+.|+++.+.. |+. ..+..+...+... .+.
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-------------------~~~ 147 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ-------------------RLR 147 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH-------------------HHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH-------------------HHH
Confidence 457789999999999999999999999998753 443 4555554331111 112
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC
Q 005454 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372 (696)
Q Consensus 293 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 372 (696)
.+...+...|++++|+..|+++... .+.+..++..+..++...|+++.|...+..+.+... .+..++..++..|...|
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 2233344455555555555555442 122334444445555555555555555555554432 24555555666666666
Q ss_pred ChHHHHHHHhcCC--CC-CchHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHH
Q 005454 373 VTDDAWTVFNMMP--TR-NVVSWNSM------------INGYAQNGQDLEALALYDKLLQENLKPD-----SFTFVSVLS 432 (696)
Q Consensus 373 ~~~~A~~~~~~~~--~~-~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~ 432 (696)
++++|...|+.+. .| +...+..+ ...+...|++++|+..|+++.+ +.|+ ...+..+..
T Consensus 226 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH
Confidence 6666666665543 12 23333333 6777888888888888888877 3455 336677777
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH---------
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKPN-SLIWSTLLSV--------- 501 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~--------- 501 (696)
++.+.|++++|...++.+.+. .+.+...|..+..+|...|++++|.+.++++ ...|+ ..++..+..+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 381 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK 381 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccc
Confidence 888888888888888887753 2335677888888888888888888888764 33454 4455555533
Q ss_pred ---HHhcC-----ChHHHHHHHHH-HHhcCCCCCc----------hHHHHHHHHhhcCChhH
Q 005454 502 ---CAMKG-----DIKHGEMAARH-LFELEPINAG----------PYIMLSNMYAACGRWED 544 (696)
Q Consensus 502 ---~~~~g-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 544 (696)
|...| +.+++.+.+++ .++..|++.. .+..+..+|...|+.+.
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22233 56777888886 6777776432 34455555555555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-20 Score=202.40 Aligned_cols=435 Identities=10% Similarity=0.008 Sum_probs=273.4
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCC---CCcchHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHHh
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPL---RDIISWNALLSAHARSGSVQDLRALFDKMP---IRDSVSYNTAIAGFAN 133 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 133 (696)
..+..+...+.+.|++++|...|+++.. .++.+|..+...|.+.|++++|.+.|+++. ..+...|..+...+..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4555666666666666666666666543 245566666666666666666666666553 1244556666666666
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHcCCCHHHHH
Q 005454 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL--GGNVFVRNALTDMYAKGGEIDKAR 211 (696)
Q Consensus 134 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~ 211 (696)
.|++++|++.|+.+.. .|+... ..+..+...+....+...+..++.... .+........+..|....+.+.+.
T Consensus 106 ~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 6666666666643221 222111 112222223333445555554433210 001111122333344455555555
Q ss_pred HHHHhcCCCChh---HHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCC-
Q 005454 212 WLFDRMNNRNLV---SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKD- 287 (696)
Q Consensus 212 ~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~- 287 (696)
..+......+.. .+..+...+...+ -......|++++|..+|+.+.+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A~~~~~~~l~~~p 233 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKSTDMYHSLLSANT 233 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHHHHHHHHHHCC
Confidence 444444432222 2222222221111 000011234555555555544321
Q ss_pred ---------hhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCch
Q 005454 288 ---------NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358 (696)
Q Consensus 288 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 358 (696)
..+|..+...+...|++++|+..|+++... .|+...+..+...+...|+++.|...+..+.+.... +.
T Consensus 234 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 310 (537)
T 3fp2_A 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YP 310 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CH
T ss_pred CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CH
Confidence 123555667778888888888888888864 455667777778888889999999999988887653 67
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 435 (696)
.++..+...|...|++++|...|+.+. +.+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+.
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 788889999999999999999998765 3467789999999999999999999999998853 344568888889999
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhcc----------CCHHHHHHHHHhCCC-C-CCHHHHHHHH
Q 005454 436 HADLFERGQNHFDSISAVHGITPS----LDHYACMINLLGRS----------SDVDKAVDLIKSLPH-K-PNSLIWSTLL 499 (696)
Q Consensus 436 ~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~-~-p~~~~~~~ll 499 (696)
..|++++|...|+.+.+...-.++ ...+..+...|.+. |++++|...+++... . .+..+|..+.
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999998764211111 22344556777777 999999999987532 3 4567899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCchHH
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
..+...|++++|...+++++++.|.++....
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999999999999998776544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.8e-18 Score=172.76 Aligned_cols=308 Identities=11% Similarity=0.042 Sum_probs=182.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhc
Q 005454 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQN 301 (696)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 301 (696)
|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+. +.+...|..+...+...
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 3444444444444444444444444432 1223344444444444455555554444433 12334455555555556
Q ss_pred CChhHHHHHHHHhccCCCCC---C-ccchHHH------------HHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHH
Q 005454 302 GKEEDALILFNEMLSEDVRP---D-KFSISSV------------VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365 (696)
Q Consensus 302 g~~~~A~~~~~~m~~~g~~p---~-~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 365 (696)
|++++|+..|+++.+. .| + ...+..+ ...+...|+++.|...+..+.+... .+..++..+.
T Consensus 85 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~ 161 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRA 161 (359)
T ss_dssp TCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 6666666666655542 22 1 1112111 3455666777777777777766554 3566677777
Q ss_pred hhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHH------------H
Q 005454 366 DMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFV------------S 429 (696)
Q Consensus 366 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~------------~ 429 (696)
..|...|++++|...|+.+. +.+...|..+...|...|++++|...|++..+. .|+. .++. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHH
Confidence 77777888888877777654 345667777778888888888888888887763 3442 2222 2
Q ss_pred HHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh--HHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhc
Q 005454 430 VLSACLHADLFERGQNHFDSISAVHGITPSL--DHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMK 505 (696)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~ 505 (696)
+...+...|++++|...++.+.+...-.|.. ..+..+...+...|++++|.+.+++... .| +..+|..+...+...
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 2445667777888888777776532111111 2344566777777777777777766422 33 566777777777777
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 506 GDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 506 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
|++++|...++++++++|+++..+..+..++..
T Consensus 320 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 888888888888887777777777766665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-17 Score=171.29 Aligned_cols=294 Identities=10% Similarity=0.036 Sum_probs=244.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHH
Q 005454 257 EVTVSNILGACFQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333 (696)
Q Consensus 257 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 333 (696)
...+..+...+...|++++|...|+.+. +.+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 3456677788999999999999999876 3467789999999999999999999999998752 22456788888899
Q ss_pred HhhcCchhHHHHHHHHHHhCCC--CchHHHHHH------------HhhHHhcCChHHHHHHHhcCC---CCCchHHHHHH
Q 005454 334 AKLASLYHGQVVHGKAVVLGVD--DDLLVSSAL------------IDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMI 396 (696)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li 396 (696)
...|+++.|...+..+.+.... .+...+..+ ...+...|++++|...|+.+. +.+...|..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999886541 244444444 578999999999999999875 45677899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHH------------
Q 005454 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA------------ 464 (696)
Q Consensus 397 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~------------ 464 (696)
..+...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+.+.+.. +.+...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999853 4457888899999999999999999999998642 22223222
Q ss_pred HHHHHHhccCCHHHHHHHHHhCCC-CCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 465 CMINLLGRSSDVDKAVDLIKSLPH-KPN-S----LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~~~~-~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
.+...+.+.|++++|.+.++++.. .|+ . ..+..+...+...|++++|...++++++.+|.++.++..++.+|..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 336779999999999999987432 343 2 2355677889999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHhhh
Q 005454 539 CGRWEDVASIRSSMKS 554 (696)
Q Consensus 539 ~g~~~~A~~~~~~m~~ 554 (696)
.|++++|.+.+++..+
T Consensus 319 ~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQE 334 (359)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999999876
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-18 Score=175.65 Aligned_cols=368 Identities=10% Similarity=0.107 Sum_probs=172.7
Q ss_pred ccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHH
Q 005454 102 RSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181 (696)
Q Consensus 102 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 181 (696)
+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6677888888888886654 7888888888888888888888653 5677888888888888888888887777
Q ss_pred HHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHH
Q 005454 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261 (696)
Q Consensus 182 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 261 (696)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7664 44577888999999999999998888754 77789999999999999999999999976 4788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchh
Q 005454 262 NILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341 (696)
Q Consensus 262 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 341 (696)
.+..++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|......+. +.|+. ...++..|.+.|.+++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHHHCCCHHH
Confidence 9999999999999999999988 488899999999999999999966555432 33433 4567888999999999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHhhHHh--cCChHHHHHHHhcCCC--------CCchHHHHHHHHHHHcCChHHHHHH
Q 005454 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCK--CGVTDDAWTVFNMMPT--------RNVVSWNSMINGYAQNGQDLEALAL 411 (696)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l 411 (696)
+..+++..+... +-...+|+-|.-.|++ .+++.+..+.|..-.. .+...|..+.-.|.+.++++.|..
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~- 303 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII- 303 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH-
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH-
Confidence 999999988665 4567788888777775 5677788888875442 356789999999999999999886
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHH-------------HHHhccCCHH
Q 005454 412 YDKLLQE-NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI-------------NLLGRSSDVD 477 (696)
Q Consensus 412 ~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-------------~~~~~~g~~~ 477 (696)
.|.+. ...-+...|..++.--....-+-+|..++- .. .|. ..+-|. ..+.+.|.+.
T Consensus 304 --tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~---~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~~l~ 373 (449)
T 1b89_A 304 --TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLP 373 (449)
T ss_dssp --HHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTT
T ss_pred --HHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc---CHH--HHHHHHHHHHhccCcHHHHHHHHHcCCcH
Confidence 44442 122233444444433333333333333332 11 122 233333 4444444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 005454 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510 (696)
Q Consensus 478 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 510 (696)
-+..+++.+...-+..+-.+|-..+....|++.
T Consensus 374 l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~ 406 (449)
T 1b89_A 374 LVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 406 (449)
T ss_dssp TTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHH
Confidence 444444444333344444555555555555543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-17 Score=166.79 Aligned_cols=285 Identities=13% Similarity=0.060 Sum_probs=183.2
Q ss_pred ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHH
Q 005454 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVG 297 (696)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 297 (696)
+...+..+...+...|++++|+++|+++.... +.+...+..++..+...|+.++|..+++++.+ .+...|..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 44455566666666666777776666666543 22334444455555566666666666655442 244455555555
Q ss_pred HHhcC-ChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHH
Q 005454 298 YTQNG-KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376 (696)
Q Consensus 298 ~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 376 (696)
+...| ++++|++.|+++... .. .+...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~-----------------------------------~~-~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTL-----------------------------------EK-TYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTT-----------------------------------CT-TCTHHHHHHHHHHHHHTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHh-----------------------------------CC-ccHHHHHHHHHHHHHccCHHH
Confidence 55555 556666665555542 21 133444555555555566666
Q ss_pred HHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHh
Q 005454 377 AWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453 (696)
Q Consensus 377 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 453 (696)
|...|+.+. +.+...|..+...|...|++++|++.|++..+.. +.+..++..+...+...|++++|..+++.+.+.
T Consensus 144 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 144 AMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 655555443 2234556667777777777777777777777642 334566677777777777777777777777653
Q ss_pred hC-------CCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 454 HG-------ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-K-PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 454 ~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
.. .+.....+..+...|.+.|++++|.+.+++... . .+..+|..+...+...|++++|...++++++++|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 21 133356778888888888888888888876422 2 35568888888899999999999999999999999
Q ss_pred CCchHHHHHHHH-hhcCChh
Q 005454 525 NAGPYIMLSNMY-AACGRWE 543 (696)
Q Consensus 525 ~~~~~~~l~~~~-~~~g~~~ 543 (696)
++..+..++.++ ...|+.+
T Consensus 303 ~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 303 DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHTTTTC--
T ss_pred chHHHHHHHHHHHHHhCchh
Confidence 998999998888 4555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-14 Score=163.18 Aligned_cols=379 Identities=11% Similarity=0.124 Sum_probs=287.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCC--CCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 005454 124 YNTAIAGFANKGFSREALQVFSRMQKDRF--EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201 (696)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 201 (696)
-...+++|...|.+.+|++++++....+- .-+...-+.++.+..+. +...+..+....- ......+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-------NYDAPDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHHHHHHH
Confidence 35667788899999999999999884321 01122233344444443 5555555555543 22244577788
Q ss_pred HcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 005454 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFH 281 (696)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 281 (696)
...|.+++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|...|.
T Consensus 1060 i~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 88999999999999975 22233344433 678899999988854 346788999999999999999999996
Q ss_pred hccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHH
Q 005454 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361 (696)
Q Consensus 282 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 361 (696)
+. .|...|..++..+.+.|++++|++.|....+.. ++....+.++.+|++.++++....+. + .++...+
T Consensus 1130 KA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHI 1198 (1630)
T ss_pred hc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHH
Confidence 64 778888999999999999999999999877653 44444446888899998887544432 1 3455666
Q ss_pred HHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHH
Q 005454 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441 (696)
Q Consensus 362 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 441 (696)
..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|.+.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHH
Confidence 67999999999999999999985 48999999999999999999999876 35688999999999999999
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CChHHHHHHHHH
Q 005454 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMK--GDIKHGEMAARH 517 (696)
Q Consensus 442 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~ 517 (696)
.|...... +..+.+.+..++..|.+.|.+++|+.+++.. ..+| ....|.-|...+.+. ++..++.+.|..
T Consensus 1268 LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1268 LAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99886643 3456777889999999999999999999774 4344 344676666666554 567777888877
Q ss_pred HHhcCC-----CCCchHHHHHHHHhhcCChhHHHHH
Q 005454 518 LFELEP-----INAGPYIMLSNMYAACGRWEDVASI 548 (696)
Q Consensus 518 ~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 548 (696)
-..+.| .+...|..+.-+|.+.|+|+.|...
T Consensus 1342 rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1342 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 776666 6777899999999999999999854
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-15 Score=164.90 Aligned_cols=351 Identities=10% Similarity=0.027 Sum_probs=243.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc----CCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----CCCch
Q 005454 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK----GGEIDKARWLFDRMNN-RNLVSWNLMISGYLK----NGQPK 239 (696)
Q Consensus 169 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~ 239 (696)
.++++.|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..|...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 455555555555555543 34455555555555 5666666666655443 344455555555555 55666
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhccC-CChhHHHHHHHHHHh----cCChhHHHHH
Q 005454 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQ----TGRIDDAGRLFHVIKE-KDNVCWTTMIVGYTQ----NGKEEDALIL 310 (696)
Q Consensus 240 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~ 310 (696)
+|+..|++..+.| +...+..+...|.. .++.++|...|++..+ .+...+..+...|.. .+++++|++.
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 6666666665554 34445555555554 5566666666665543 355566666666666 6777777777
Q ss_pred HHHhccCCCCCCccchHHHHHHHHh----hcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHh----cCChHHHHHHHh
Q 005454 311 FNEMLSEDVRPDKFSISSVVSSCAK----LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK----CGVTDDAWTVFN 382 (696)
Q Consensus 311 ~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~ 382 (696)
|++..+.| +...+..+...+.. .++.+.|...+....+.+ +...+..|..+|.. .++.++|...|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 77776543 33445555555554 567777777777776654 45566667777777 788999999988
Q ss_pred cCCC-CCchHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC---cHHHHHHHHHHhHHh
Q 005454 383 MMPT-RNVVSWNSMINGYAQN-----GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD---LFERGQNHFDSISAV 453 (696)
Q Consensus 383 ~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~ 453 (696)
...+ .+...+..+...|... ++.++|+..|++..+.| +...+..+...+...| +.++|.++|++..+.
T Consensus 284 ~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 7654 4566778888888887 89999999999998865 4456666666666656 789999999998863
Q ss_pred hCCCCChHHHHHHHHHHhc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCC-
Q 005454 454 HGITPSLDHYACMINLLGR----SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHGEMAARHLFELEPI- 524 (696)
Q Consensus 454 ~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~- 524 (696)
.+...+..+..+|.. .+++++|.+.+++.....+...+..|...|.. .+|.++|...++++.+.+|+
T Consensus 361 ----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 436 (490)
T 2xm6_A 361 ----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNL 436 (490)
T ss_dssp ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCH
T ss_pred ----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 467788888888888 89999999999886555577888889888887 89999999999999999954
Q ss_pred --CCchHHHHHHHHhh
Q 005454 525 --NAGPYIMLSNMYAA 538 (696)
Q Consensus 525 --~~~~~~~l~~~~~~ 538 (696)
++.+...|+.++..
T Consensus 437 ~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 437 FGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHTTSCHH
T ss_pred cCCHHHHHHHHhcCHh
Confidence 77777777777664
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.9e-17 Score=162.85 Aligned_cols=263 Identities=12% Similarity=0.017 Sum_probs=218.6
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHh
Q 005454 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366 (696)
Q Consensus 287 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 366 (696)
+...+..++..+...|++++|+++|+++.... +.+...+..++..+...|+.+.|...+..+.+.... +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 45556667777777788888888888877642 233445556677778888888888888888876543 6778888999
Q ss_pred hHHhcC-ChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHH
Q 005454 367 MYCKCG-VTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442 (696)
Q Consensus 367 ~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 442 (696)
.|...| ++++|...|+... +.+...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 999999 9999999999765 3467789999999999999999999999999853 3345677778889999999999
Q ss_pred HHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHhcCChHHH
Q 005454 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-----------KPNSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 443 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~p~~~~~~~ll~~~~~~g~~~~a 511 (696)
|..+++.+.+ ..+.+...+..+...|.+.|++++|.+.+++... +.+..+|..+...+...|++++|
T Consensus 178 A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 178 AERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999986 3344578899999999999999999999876421 23456899999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
...+++++++.|.++.++..++.+|...|++++|.+.+++..+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999987754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-14 Score=161.29 Aligned_cols=440 Identities=10% Similarity=0.082 Sum_probs=278.4
Q ss_pred ChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCC--Ccc-cHHHHHHH---------------------------HHHc
Q 005454 22 TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEP--NTT-FLHNRLLH---------------------------FYAK 71 (696)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~-~~~~~li~---------------------------~~~~ 71 (696)
++.-.....+++. ..+.+.++++++.+++..+. ... ..-+.|+. .+..
T Consensus 984 ~PeeVs~~vKaf~--~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 984 DPEEVSVTVKAFM--TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAIS 1061 (1630)
T ss_pred CHHHhHHHHHHHH--hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHh
Confidence 3444556777777 77788888888877773322 122 44444443 3445
Q ss_pred cCChHHHHHHHccCCCCCcchHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCC
Q 005454 72 SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151 (696)
Q Consensus 72 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 151 (696)
.|.+++|..+|++... .....+.++ -..|++++|.++.++.. +..+|..+..++...|++++|++.|.+.
T Consensus 1062 lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred CCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 6666666666666531 112222222 25667777777777653 3556788888888888888888888664
Q ss_pred CCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHH
Q 005454 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231 (696)
Q Consensus 152 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 231 (696)
-|...|..++.+|.+.|+++++.+++....+.. +++.+.+.++.+|++.+++++..... ..++...|..+...
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDR 1204 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHH
Confidence 355677778888888888888888888777654 34334445888888888888544443 34566677778888
Q ss_pred HHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 005454 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311 (696)
Q Consensus 232 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 311 (696)
|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+..++...|++..|....
T Consensus 1205 le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 88888888888888874 37888888888888888888888876 55678888888888888888887766
Q ss_pred HHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHh--cCChHHHHHHHhcCCC---
Q 005454 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK--CGVTDDAWTVFNMMPT--- 386 (696)
Q Consensus 312 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~A~~~~~~~~~--- 386 (696)
..+ ..+...+..++..|...|.+++|..+++..+... +.....++-|...|++ .+++.++.+.|..-..
T Consensus 1274 l~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1274 LHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred Hhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 542 2344456677888888888888888887777655 3456667666666665 4566666666664332
Q ss_pred -----CCchHHHHHHHHHHHcCChHHHHHHH-------------HHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Q 005454 387 -----RNVVSWNSMINGYAQNGQDLEALALY-------------DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448 (696)
Q Consensus 387 -----~~~~~~~~li~~~~~~g~~~~A~~l~-------------~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 448 (696)
.+...|..+...|.+.|+++.|.... ...+. -..|...|...+.-|.. ...++...+.
T Consensus 1348 ~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~--~~P~~lndLl 1423 (1630)
T 1xi4_A 1348 VLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLE--FKPLLLNDLL 1423 (1630)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHh--hChHHHHHHH
Confidence 24557888888888888888887322 22111 13344555555554442 1222222222
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005454 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507 (696)
Q Consensus 449 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 507 (696)
... .|... +...+..+.+.|.+.-+..+++.....-+..+-.+|...+....|
T Consensus 1424 ~~l-----~~rlD-~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed 1476 (1630)
T 1xi4_A 1424 MVL-----SPRLD-HTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEED 1476 (1630)
T ss_pred HHh-----hhcCC-hHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccc
Confidence 221 12221 234456666666666666666554433333333444444443333
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-15 Score=160.96 Aligned_cols=208 Identities=7% Similarity=0.044 Sum_probs=167.0
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHhhHHh-------cCChH-------HHHHHHhcCCC---C-CchHHHHHHHHHHHc
Q 005454 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCK-------CGVTD-------DAWTVFNMMPT---R-NVVSWNSMINGYAQN 402 (696)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 402 (696)
.+..+++.++...+ .+..+|..++..+.+ .|+++ +|..+|++... | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 56678888888644 467888888888876 79987 89999997653 3 567899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHH-HhccCCHHH
Q 005454 403 GQDLEALALYDKLLQENLKPDS--FTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDHYACMINL-LGRSSDVDK 478 (696)
Q Consensus 403 g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~~~~ 478 (696)
|++++|..+|+++++ +.|+. ..|...+..+.+.|++++|..+|++..+. .|. ...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence 999999999999998 46653 47888888888899999999999998853 333 3333333322 346899999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc----hHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 479 AVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG----PYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 479 A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
|..+|++.. ..| +...|..++..+...|+.++|..+++++++..|.++. .|...+......|+.+.+.++.+++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998643 234 5779999999999999999999999999998877665 6777888888999999999999988
Q ss_pred hh
Q 005454 553 KS 554 (696)
Q Consensus 553 ~~ 554 (696)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-15 Score=160.37 Aligned_cols=350 Identities=13% Similarity=0.063 Sum_probs=295.3
Q ss_pred chhHHHHHHHHHHc----CCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----CCCchHHHHHHHHHHHcCCCCCcchH
Q 005454 190 NVFVRNALTDMYAK----GGEIDKARWLFDRMNN-RNLVSWNLMISGYLK----NGQPKKCIDLFQEMQLLGLNPDEVTV 260 (696)
Q Consensus 190 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~ 260 (696)
+......|...|.. .++++.|...|++..+ .+..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 66777778888888 8999999999988755 577788899999999 899999999999998875 56677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhccCC-ChhHHHHHHHHHHh----cCChhHHHHHHHHhccCCCCCCccchHHHHH
Q 005454 261 SNILGACFQ----TGRIDDAGRLFHVIKEK-DNVCWTTMIVGYTQ----NGKEEDALILFNEMLSEDVRPDKFSISSVVS 331 (696)
Q Consensus 261 ~~ll~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 331 (696)
..+...|.. .++.++|...|+...+. ++..+..+...|.. .+++++|++.|++..+.| +...+..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 778888887 78999999999987654 67788888888887 789999999999998764 5666777777
Q ss_pred HHHh----hcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHh----cCChHHHHHHHhcCCC-CCchHHHHHHHHHHH-
Q 005454 332 SCAK----LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK----CGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQ- 401 (696)
Q Consensus 332 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~- 401 (696)
.+.. .++.+.|...+....+.+ +...+..|..+|.. .++.++|...|+...+ .+...+..+...|..
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQG 268 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Confidence 7776 789999999999999875 56778888888886 8999999999997654 566788888888888
Q ss_pred ---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC-----CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc
Q 005454 402 ---NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA-----DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473 (696)
Q Consensus 402 ---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 473 (696)
.++.++|++.|++..+.| +...+..+...+... +++++|..+|+...+. .+...+..+..+|.+.
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRL 341 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhC
Confidence 899999999999998865 455666677777766 8999999999998863 2456777888888776
Q ss_pred C---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh----cCCh
Q 005454 474 S---DVDKAVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA----CGRW 542 (696)
Q Consensus 474 g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~ 542 (696)
| ++++|.+.+++.....+...+..|...|.. .++.++|...++++.+.+ ++.++..|+.+|.. .+++
T Consensus 342 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence 7 889999999886555678899999999988 899999999999999865 57889999999999 8999
Q ss_pred hHHHHHHHHhhhCCC
Q 005454 543 EDVASIRSSMKSKNV 557 (696)
Q Consensus 543 ~~A~~~~~~m~~~~~ 557 (696)
++|...+++..+.+.
T Consensus 420 ~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 420 VQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999999988663
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-17 Score=166.16 Aligned_cols=377 Identities=16% Similarity=0.126 Sum_probs=175.1
Q ss_pred ccCChHHHHHHHccCCCCCcchHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHC
Q 005454 71 KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150 (696)
Q Consensus 71 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 150 (696)
+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+. +|...|..++..+...|++++|+..++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 678899999999999555 48999999999999999999999764 56668899999999999999999977766653
Q ss_pred CCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHH
Q 005454 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230 (696)
Q Consensus 151 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 230 (696)
.++..+.+.++.++.+.|+++++.+++. .|+..+|+.+.+.|...|.+++|...|..+ ..|..++.
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 4567788889999999999998887774 367779999999999999999999999987 47899999
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHH
Q 005454 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310 (696)
Q Consensus 231 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 310 (696)
++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++|+.+
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999987 377899999999999999999987777655 4444555688899999999999999
Q ss_pred HHHhccCCCCCCccchHHHHHHHHh--hcCchhHHHHHHHHHHhCCCC------chHHHHHHHhhHHhcCChHHHHHHHh
Q 005454 311 FNEMLSEDVRPDKFSISSVVSSCAK--LASLYHGQVVHGKAVVLGVDD------DLLVSSALIDMYCKCGVTDDAWTVFN 382 (696)
Q Consensus 311 ~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~~~~ 382 (696)
++..+... +-....|+-+.-++++ .+++.+..+.|.. +.+++| +...|..++..|.+-++++.|....-
T Consensus 230 Le~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 99987542 2233344444444443 3444444444432 112222 45678889999999999999887655
Q ss_pred cCCC---------------CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 005454 383 MMPT---------------RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447 (696)
Q Consensus 383 ~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 447 (696)
.-+. .|+..|...|.-|.. ....++.-+...+...+.| +.++.-+.+.|.+.-...++
T Consensus 307 ~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~~ld~-----~r~v~~~~~~~~l~l~~~yl 379 (449)
T 1b89_A 307 NHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDH-----TRAVNYFSKVKQLPLVKPYL 379 (449)
T ss_dssp HSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGGGCCH-----HHHHHHHHHTTCTTTTHHHH
T ss_pred hCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhccCc-----HHHHHHHHHcCCcHHHHHHH
Confidence 4431 345566666666652 2222222222222211222 23344445666666666666
Q ss_pred HHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC
Q 005454 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 448 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 486 (696)
..+... -+..+-.++-++|....+++.-..-++..
T Consensus 380 ~~v~~~----n~~~vnealn~l~ieeed~~~lr~si~~~ 414 (449)
T 1b89_A 380 RSVQNH----NNKSVNESLNNLFITEEDYQALRTSIDAY 414 (449)
T ss_dssp HHHHTT----CCHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHh----hHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 665532 23344455667777777777666666554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=165.35 Aligned_cols=256 Identities=10% Similarity=0.035 Sum_probs=182.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHH
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 369 (696)
.|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.|...+..+.+.... +..++..+...|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 34455555555555555555555555431 223334444555555555555555555555554432 4555555666666
Q ss_pred hcCChHHHHHHHhcCCC---CCchHHHH---------------HHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHH
Q 005454 370 KCGVTDDAWTVFNMMPT---RNVVSWNS---------------MINGYAQNGQDLEALALYDKLLQENLKPD---SFTFV 428 (696)
Q Consensus 370 ~~g~~~~A~~~~~~~~~---~~~~~~~~---------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~ 428 (696)
..|++++|...|+.+.. .+...+.. .+..+...|++++|+..|+++.+. .|+ ..++.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~ 221 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQC 221 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHHH
Confidence 66666666666654431 11111110 133333889999999999999884 444 77888
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcC
Q 005454 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HK-PNSLIWSTLLSVCAMKG 506 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g 506 (696)
.+...+...|++++|...|+.+.+. .+.+...+..++..|.+.|++++|.+.++++. .. .+..+|..+...+...|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 8999999999999999999998863 23457889999999999999999999998753 23 45779999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHhhcCChhHHHHHHHH
Q 005454 507 DIKHGEMAARHLFELEPIN-----------AGPYIMLSNMYAACGRWEDVASIRSS 551 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 551 (696)
++++|...+++++++.|.+ +.+|..++.+|...|++++|..++++
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999999887 78899999999999999999998863
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-16 Score=155.08 Aligned_cols=267 Identities=9% Similarity=-0.027 Sum_probs=183.7
Q ss_pred hcCCHHHHHHHHHhccCCCh----hHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHH
Q 005454 269 QTGRIDDAGRLFHVIKEKDN----VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344 (696)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 344 (696)
..|++..|...++.+...++ .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+.|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 34444444444444333221 1223344455555555555544432 123334444444555555555555555
Q ss_pred HHHHHHHhCC-CCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005454 345 VHGKAVVLGV-DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423 (696)
Q Consensus 345 ~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (696)
.++.++..+. +.+...+..+...|...|++++|...|+. ..+...+..++..|.+.|+.++|.+.|+++.+. .|+
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 162 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DED 162 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcC
Confidence 5555555442 22455667778889999999999999998 567788999999999999999999999999985 466
Q ss_pred HHHH---HHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 005454 424 SFTF---VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTL 498 (696)
Q Consensus 424 ~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 498 (696)
.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.+++. ...| +..+|..+
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4321 12233444669999999999999874 4567888999999999999999999999874 3345 56689999
Q ss_pred HHHHHhcCChHH-HHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHH
Q 005454 499 LSVCAMKGDIKH-GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549 (696)
Q Consensus 499 l~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 549 (696)
+..+...|+.++ +.+.++++++++|+++.+. +...+.+.++++..-|
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 999999999865 6789999999999987643 4566666666665543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-15 Score=160.93 Aligned_cols=361 Identities=13% Similarity=0.029 Sum_probs=199.4
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhcCC------------CChhHHHHHHHHHHhCCCchHHHHHHHHHHHc-----C-C
Q 005454 192 FVRNALTDMYAKGGEIDKARWLFDRMNN------------RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL-----G-L 253 (696)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~ 253 (696)
..||.|...|...|+.++|++.|++..+ ...++|+.+...|...|++++|...+++..+. + .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 3455555555555555555555544311 12345556666666666666666665554331 0 0
Q ss_pred CC-CcchHHHHHHHHHhc--CCHHHHHHHHHhcc---CCChhHHHHHHHH---HHhcCChhHHHHHHHHhccCCCCCC-c
Q 005454 254 NP-DEVTVSNILGACFQT--GRIDDAGRLFHVIK---EKDNVCWTTMIVG---YTQNGKEEDALILFNEMLSEDVRPD-K 323 (696)
Q Consensus 254 ~p-~~~t~~~ll~~~~~~--g~~~~A~~~~~~~~---~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~-~ 323 (696)
.+ ...++.....++.+. +++++|...|++.. +.++..+..+... +...++.++|++.+++.++. .|+ .
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~ 209 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQ 209 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcch
Confidence 11 122333333333333 34666666666554 2234444444333 33456667777777766653 333 2
Q ss_pred cchHHHHHHHHh----hcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHH
Q 005454 324 FSISSVVSSCAK----LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMI 396 (696)
Q Consensus 324 ~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li 396 (696)
.++..+...+.. .++.+.|.+.+..+...... +..++..+...|.+.|++++|...|++.. +.+..+|..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 333333333322 35566777777777766543 55666777777777777777777777654 23444555555
Q ss_pred HHHHH-------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCC
Q 005454 397 NGYAQ-------------------NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457 (696)
Q Consensus 397 ~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 457 (696)
..|.. .+..++|...|++..+.. +.+..++..+...+...|++++|+..|++..+. ...
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~ 366 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELT 366 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCC
Confidence 55432 234567888888887743 334567788888999999999999999988763 222
Q ss_pred CCh--HHHHHHHH-HHhccCCHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 005454 458 PSL--DHYACMIN-LLGRSSDVDKAVDLIKS-LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533 (696)
Q Consensus 458 p~~--~~~~~li~-~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (696)
|.. ..+..+.. .+...|+.++|++.+++ +...|+...+... .+.++.++++.++.+|.++.+|..|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG 437 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 221 12333333 34578999999999876 3445665433322 34556778889999999999999999
Q ss_pred HHHhhcCChhHHHHHHHHhhhCCCcCCCceeEE
Q 005454 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWI 566 (696)
Q Consensus 534 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i 566 (696)
.+|...|++++|.+.+++..+.+-......+|+
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHCC-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999988776555555664
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=157.91 Aligned_cols=282 Identities=11% Similarity=0.011 Sum_probs=164.5
Q ss_pred HHcCCCHHHHHH-HHHhcCC--C-----ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 005454 201 YAKGGEIDKARW-LFDRMNN--R-----NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272 (696)
Q Consensus 201 ~~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 272 (696)
+...|++++|.. .|++... + +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...|...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334578888888 7876543 1 34568888889999999999999999998864 3456678888888999999
Q ss_pred HHHHHHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHH----------------HHHHH
Q 005454 273 IDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS----------------VVSSC 333 (696)
Q Consensus 273 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----------------ll~~~ 333 (696)
+++|...|+.+. +.+..+|..+...|...|++++|++.|+++.... |+...... .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999998765 3467788999999999999999999999998753 33222211 12222
Q ss_pred HhhcCchhHHHHHHHHHHhCCCC-chHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHH
Q 005454 334 AKLASLYHGQVVHGKAVVLGVDD-DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412 (696)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 412 (696)
...|+++.|...+..+.+..... +.. +|..+...|...|++++|+..|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~ 240 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPD-------------------------------VQCGLGVLFNLSGEYDKAVDCF 240 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHH-------------------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHH-------------------------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 24555555555555555443321 234 4444455555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-
Q 005454 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KP- 490 (696)
Q Consensus 413 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p- 490 (696)
+++.+.. +.+..++..+...+...|++++|...|+.+.+. .+.+...+..+..+|.+.|++++|.+.++++.. .|
T Consensus 241 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 241 TAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 5544421 222344445555555555555555555555432 122344455555555555555555555543211 01
Q ss_pred -----------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005454 491 -----------NSLIWSTLLSVCAMKGDIKHGEMAARHLF 519 (696)
Q Consensus 491 -----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (696)
...+|..+..++...|+.++|..++++.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 14566666666667777766666665443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-14 Score=157.73 Aligned_cols=406 Identities=10% Similarity=0.062 Sum_probs=279.9
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 005454 89 DIISWNALLSAHARSGSVQDLRALFDKMPI--R-DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165 (696)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 165 (696)
|..+|..++. +.+.|+++.|+.+|+++.. | +...|...+..+.+.|++++|..+|+++.+. .|+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 7778999998 4788999999999998864 3 5567999999999999999999999999875 4776666666643
Q ss_pred H-HccCChHHHHH----HHHHHHHc-CCCC-chhHHHHHHHHHHc---------CCCHHHHHHHHHhcCC-CCh---hHH
Q 005454 166 C-AQLLDLRRGKQ----IHGKIVVG-NLGG-NVFVRNALTDMYAK---------GGEIDKARWLFDRMNN-RNL---VSW 225 (696)
Q Consensus 166 ~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~-~~~---~~~ 225 (696)
. ...|+.+.|.+ +++..+.. |..| +..+|...+....+ .|+++.|..+|++... |+. ..|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 3 35577766655 66666553 5443 46677777776655 6788899999988765 321 233
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh-------cc------CCC-----
Q 005454 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV-------IK------EKD----- 287 (696)
Q Consensus 226 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~-------~~------~~~----- 287 (696)
..........|. ..+..++. .+.++++.|..++.. +. .|+
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 322221100010 00101110 012334444444332 11 111
Q ss_pred ---hhHHHHHHHHHHhc----CCh----hHHHHHHHHhccCCCCCCccchHHHHHHHHh-------hcCch-------hH
Q 005454 288 ---NVCWTTMIVGYTQN----GKE----EDALILFNEMLSEDVRPDKFSISSVVSSCAK-------LASLY-------HG 342 (696)
Q Consensus 288 ---~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a 342 (696)
...|...+...... ++. ++++.+|++.+.. .+-+...|......+.. .|+++ .|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 23455555433222 222 3677788888764 23345556666666554 68876 88
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC--CC-Cc-hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005454 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TR-NV-VSWNSMINGYAQNGQDLEALALYDKLLQE 418 (696)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 418 (696)
..+++.+++.-.+.+..++..++..+.+.|++++|..+|+++. .| +. ..|..++..+.+.|+.++|.++|++..+.
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888888863233468889999999999999999999999765 23 33 48999999999999999999999999884
Q ss_pred CCCCC-HHHHHHHHHH-HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC----CCCC-
Q 005454 419 NLKPD-SFTFVSVLSA-CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP----HKPN- 491 (696)
Q Consensus 419 g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~- 491 (696)
.|+ ...|...... +...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++.. ..|+
T Consensus 386 --~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 386 --ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp --TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred --cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 343 3333332222 335899999999999998743 3457889999999999999999999998752 2332
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 492 -SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 492 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 458988898889999999999999999999884
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=165.21 Aligned_cols=260 Identities=12% Similarity=0.013 Sum_probs=189.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhh
Q 005454 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367 (696)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 367 (696)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+++... .+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3446666666666677777777776666542 23445566666666667777777777777666543 246667777777
Q ss_pred HHhcCChHHHHHHHhcCCCC-------------CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 005454 368 YCKCGVTDDAWTVFNMMPTR-------------NVVSWNSMINGYAQNGQDLEALALYDKLLQENLK-PDSFTFVSVLSA 433 (696)
Q Consensus 368 y~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a 433 (696)
|...|++++|...|+++... ....+..+...+...|++++|+..|+++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 77777777777777765421 1223445678888999999999999999885311 157788889999
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a 511 (696)
+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|.+.++++. ..| +..+|..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998863 24457889999999999999999999998753 244 477899999999999999999
Q ss_pred HHHHHHHHhcCCC------------CCchHHHHHHHHhhcCChhHHHHHHHH
Q 005454 512 EMAARHLFELEPI------------NAGPYIMLSNMYAACGRWEDVASIRSS 551 (696)
Q Consensus 512 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 551 (696)
...+++++++.|. +...+..++.++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999876 366799999999999999999887754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.2e-16 Score=160.27 Aligned_cols=231 Identities=12% Similarity=0.046 Sum_probs=195.8
Q ss_pred CccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHH
Q 005454 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMING 398 (696)
Q Consensus 322 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 398 (696)
+...+......+...|+++.|...+..+++..+. +..++..+...|.+.|++++|...|+++. +.+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4556888889999999999999999999998754 78899999999999999999999999876 3567899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 005454 399 YAQNGQDLEALALYDKLLQENLKPDSF-----------TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467 (696)
Q Consensus 399 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 467 (696)
|...|++++|+..|+++.+. .|+.. .+..+...+...|++++|..+|+++.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999883 45432 223346788899999999999999987533223688999999
Q ss_pred HHHhccCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHH
Q 005454 468 NLLGRSSDVDKAVDLIKSLPH-K-PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 545 (696)
..|.+.|++++|.+.+++... . .+..+|..+..++...|++++|...+++++++.|.++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999987532 3 46779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhC
Q 005454 546 ASIRSSMKSK 555 (696)
Q Consensus 546 ~~~~~~m~~~ 555 (696)
...++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998763
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=7.4e-16 Score=156.13 Aligned_cols=255 Identities=9% Similarity=-0.010 Sum_probs=170.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC
Q 005454 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372 (696)
Q Consensus 293 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 372 (696)
.+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+.+... .+..++..+...|...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcC
Confidence 33334444444444444444443321 11223333334444444444444444444444332 13444455555555555
Q ss_pred ChHHHHHHHhcCCC---CCchHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005454 373 VTDDAWTVFNMMPT---RNVVSWNSM--------------IN-GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434 (696)
Q Consensus 373 ~~~~A~~~~~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 434 (696)
++++|...|+.+.. .+...+..+ .. .+...|++++|++.++++.+.. +.+..++..+...+
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLY 182 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 55555555554331 111222222 22 3667788999999999988853 34567888888899
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHH
Q 005454 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGE 512 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~ 512 (696)
...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++. ..| +..+|..+...+...|++++|.
T Consensus 183 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999998863 23457788899999999999999999998743 233 5778999999999999999999
Q ss_pred HHHHHHHhcCCC------------CCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 513 MAARHLFELEPI------------NAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 513 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
..++++++..|. ++..+..++.+|...|++++|..++++.
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999998 6888999999999999999999998644
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-15 Score=146.02 Aligned_cols=225 Identities=10% Similarity=-0.004 Sum_probs=166.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhcC
Q 005454 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV-TVSNILGACFQTG 271 (696)
Q Consensus 193 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g 271 (696)
....+..+|...|+++.|...++....++..++..+...+...++.++|++.++++...+..|+.. .+..+...|...|
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 445567889999999999988877655667788889999999999999999999999887666654 4455557889999
Q ss_pred CHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHH----HHHHhhcCchhHHHHHH
Q 005454 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV----SSCAKLASLYHGQVVHG 347 (696)
Q Consensus 272 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll----~~~~~~~~~~~a~~~~~ 347 (696)
++++|.+.+++ ..+...+..++..|.+.|++++|.+.|+++.+. .|+.. ...+. ..+...|++++|..+++
T Consensus 116 ~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~ 190 (291)
T 3mkr_A 116 NPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQ 190 (291)
T ss_dssp CHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 99999999998 567888999999999999999999999999875 35542 22222 22333477778888888
Q ss_pred HHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHH-HHHHHHHHHHCCCCCC
Q 005454 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLE-ALALYDKLLQENLKPD 423 (696)
Q Consensus 348 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~p~ 423 (696)
.+.+..+ .+..+++.+..+|.+.|++++|...|++.. +.+..+|..++..+...|+.++ +.++++++.+ +.|+
T Consensus 191 ~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~ 267 (291)
T 3mkr_A 191 EMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRS 267 (291)
T ss_dssp HHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCC
Confidence 7777643 466677777777777777777777777654 3355567777777777777654 4566676666 4555
Q ss_pred HH
Q 005454 424 SF 425 (696)
Q Consensus 424 ~~ 425 (696)
..
T Consensus 268 ~~ 269 (291)
T 3mkr_A 268 HP 269 (291)
T ss_dssp CH
T ss_pred Ch
Confidence 43
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4e-14 Score=143.29 Aligned_cols=222 Identities=14% Similarity=0.061 Sum_probs=109.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhc
Q 005454 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQN 301 (696)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 301 (696)
|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...|+++. +.+...|..+...|...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 3444445555555555555555554432 2233444445555555555555555555443 23455666777777777
Q ss_pred CChhHHHHHHHHhccCCCCCCccchHHHH--------------H--HHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHH
Q 005454 302 GKEEDALILFNEMLSEDVRPDKFSISSVV--------------S--SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365 (696)
Q Consensus 302 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--------------~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 365 (696)
|++++|++.++++... .|+.......+ . .+...|+++.|...+..+.+.... +..++..+.
T Consensus 103 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 179 (327)
T 3cv0_A 103 HNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLG 179 (327)
T ss_dssp TCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 8888888887777754 23222211111 1 144455555555555555554432 344444555
Q ss_pred hhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHH
Q 005454 366 DMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442 (696)
Q Consensus 366 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 442 (696)
..|.+.|++++|...|+.+. +.+...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHH
Confidence 55555555555555554432 2233444444555555555555555555544421 1223344444444444445555
Q ss_pred HHHHHHHhH
Q 005454 443 GQNHFDSIS 451 (696)
Q Consensus 443 a~~~~~~m~ 451 (696)
|.+.|+.+.
T Consensus 259 A~~~~~~a~ 267 (327)
T 3cv0_A 259 AAKQLVRAI 267 (327)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-16 Score=173.48 Aligned_cols=147 Identities=12% Similarity=0.087 Sum_probs=124.5
Q ss_pred cchHHHHHHHHHccCChhHHHHHHhcCC-------CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHH
Q 005454 90 IISWNALLSAHARSGSVQDLRALFDKMP-------IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSA 162 (696)
Q Consensus 90 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 162 (696)
..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3589999999999999999999997763 689999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhCC
Q 005454 163 LNACAQLLDL-RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-----RNLVSWNLMISGYLKNG 236 (696)
Q Consensus 163 l~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g 236 (696)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++...+++..+.. +.+.+.+.|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 78999999999999999999999999887776655555555444432 11334455666666555
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-16 Score=171.15 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=112.4
Q ss_pred CCCchHHHHHHHhhHHhcCChHHHHHHHhcCC-------CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 005454 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-------TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426 (696)
Q Consensus 354 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 426 (696)
...-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33456789999999999999999999997653 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCc-HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHH
Q 005454 427 FVSVLSACLHADL-FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483 (696)
Q Consensus 427 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 483 (696)
|+++|.++++.|. .++|.++|+.|.+. |+.||..+|++++....+.+-++.+.++.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhC
Confidence 9999999999987 47889999999985 99999999999988777766555554443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-13 Score=147.42 Aligned_cols=383 Identities=11% Similarity=0.000 Sum_probs=228.5
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhHHC-----C--CCC-CcchHHHHHHHHHccCChHHHHHHHHHHHHcC-----
Q 005454 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKD-----R--FEP-TDYTHVSALNACAQLLDLRRGKQIHGKIVVGN----- 186 (696)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----- 186 (696)
....||.|...+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...++.+.+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567999999999999999999999987541 1 123 34578888889999999999999998877531
Q ss_pred -CC-CchhHHHHHHHHHHc--CCCHHHHHHHHHhcCC--C-ChhHHHHHHHH---HHhCCCchHHHHHHHHHHHcCCCCC
Q 005454 187 -LG-GNVFVRNALTDMYAK--GGEIDKARWLFDRMNN--R-NLVSWNLMISG---YLKNGQPKKCIDLFQEMQLLGLNPD 256 (696)
Q Consensus 187 -~~-~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p~ 256 (696)
.. ....++..+..++.+ .+++++|...|++..+ | +...+..+... +...++.++|++.+++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 11 123455555444544 4578999999988764 3 44455555444 445688889999998887753 223
Q ss_pred cchHHHHHHHHHh----cCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCc-cchHH
Q 005454 257 EVTVSNILGACFQ----TGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK-FSISS 328 (696)
Q Consensus 257 ~~t~~~ll~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ 328 (696)
..++..+...+.. .|+.++|.+.+++.. +.+...+..+...|...|++++|+..|.+..+. .|+. .++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHH
Confidence 4445555444444 456778888887654 346677888888999999999999999988763 4443 33333
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCCh
Q 005454 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQD 405 (696)
Q Consensus 329 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 405 (696)
+...+...+... ... ............+..+.|...|+... +.+..+|..+...|...|++
T Consensus 287 lg~~y~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHh---------hhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccH
Confidence 333332211000 000 00011111122234566777776554 44567889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHH
Q 005454 406 LEALALYDKLLQENLKPDSF--TFVSVLS-ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482 (696)
Q Consensus 406 ~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 482 (696)
++|++.|++.++....|... .+..+.. ...+.|+.++|+..|.+..+ +.|+........ ..+.++
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~ 418 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHH
Confidence 99999999999854333221 2223322 24578999999999998875 456543332222 223333
Q ss_pred HHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 005454 483 IKSL-PHK-PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533 (696)
Q Consensus 483 ~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (696)
++.. ... .+..+|..|...+...|++++|...++++++++|.+|.++..++
T Consensus 419 ~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 3332 122 35668999999999999999999999999999999888776654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.9e-14 Score=135.02 Aligned_cols=224 Identities=11% Similarity=0.018 Sum_probs=160.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhH
Q 005454 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368 (696)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 368 (696)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|+++.|...+..+.+.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence 345556666666666666666666665543 444444444444444455554444444443321110
Q ss_pred HhcCChHHHHHHHhcCCCCC----chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 005454 369 CKCGVTDDAWTVFNMMPTRN----VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444 (696)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 444 (696)
.++ ...|..+...|...|++++|+..|++..+ +.|+.. .+...|++++|.
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~ 125 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKEL 125 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHH
Confidence 011 45677788888888888888888888887 455543 344567788888
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 445 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
..++.+.. ..+.+...+..+...+...|++++|.+.+++... +.+..+|..+...+...|++++|...++++++.+
T Consensus 126 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 126 KKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 88888875 2233456788888889999999999998877532 3457789999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 523 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
|.++..|..++.+|...|++++|.+.+++..+
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.4e-14 Score=131.51 Aligned_cols=194 Identities=14% Similarity=0.033 Sum_probs=152.3
Q ss_pred CCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 005454 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSV 430 (696)
Q Consensus 355 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 430 (696)
+++...+..+...+.+.|++++|...|+... +.+...|..+...+.+.|++++|+..|++.++. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 3466677788888889999999999888654 346678888999999999999999999999884 454 5677888
Q ss_pred HHHHhcC-----------CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 005454 431 LSACLHA-----------DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKPNSLIWSTL 498 (696)
Q Consensus 431 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 498 (696)
..++... |++++|+..|++..+. -+-+...+..+..+|...|++++|++.|++.. ...+...|..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 9999999999998863 22346788889999999999999999998632 12678899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
..++...|++++|...++++++++|+++.++..++.+|...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.2e-14 Score=135.62 Aligned_cols=235 Identities=9% Similarity=0.001 Sum_probs=163.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCC--CC----ccchHH
Q 005454 257 EVTVSNILGACFQTGRIDDAGRLFHVIKE--KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR--PD----KFSISS 328 (696)
Q Consensus 257 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~t~~~ 328 (696)
...+..+...+...|++++|...|+...+ .+...|..+...|...|++++|++.+++..+.... |+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 35677888889999999999999987653 66788999999999999999999999998763211 11 234444
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHH
Q 005454 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408 (696)
Q Consensus 329 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 408 (696)
+...+...|+++.|...+..+.+... + ...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~---------------------------------~-------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHR---------------------------------T-------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC---------------------------------C-------HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCc---------------------------------h-------hHHHHHHhHHHHH
Confidence 44444555555555555555444332 2 1234555667777
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC
Q 005454 409 LALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487 (696)
Q Consensus 409 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 487 (696)
+..++++... .|+ ...+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++..
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777777663 333 345666666777777777777777777653 23346677777777788888888877776642
Q ss_pred -CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCCchHHHHHHH
Q 005454 488 -HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELE------PINAGPYIMLSNM 535 (696)
Q Consensus 488 -~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 535 (696)
..| +..+|..+...+...|++++|...++++++++ |.+...+..+..+
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 233 46688888888899999999999999999888 7766666665543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=134.94 Aligned_cols=241 Identities=10% Similarity=-0.080 Sum_probs=184.6
Q ss_pred hcCChhHHHHHHHHhccCCCC---CCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHH
Q 005454 300 QNGKEEDALILFNEMLSEDVR---PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376 (696)
Q Consensus 300 ~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 376 (696)
..|++++|+..|+++.+.... .+..++..+...+...|+++.|...+..+++.... +..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 456777888888777764221 13445666677777788888888888888776543 67788888889999999999
Q ss_pred HHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHh
Q 005454 377 AWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453 (696)
Q Consensus 377 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 453 (696)
|...|++.. +.+...|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999988765 34678899999999999999999999999988 4566655555555667779999999999888763
Q ss_pred hCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPN-----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 454 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
.+++...+ .++..+...++.++|.+.+++... .|+ ..+|..+...+...|++++|...++++++.+|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 33444444 477778888899999999987543 232 568899999999999999999999999999997755
Q ss_pred hHHHHHHHHhhcCChhHHHHHH
Q 005454 528 PYIMLSNMYAACGRWEDVASIR 549 (696)
Q Consensus 528 ~~~~l~~~~~~~g~~~~A~~~~ 549 (696)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 66788889999988765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-13 Score=142.53 Aligned_cols=339 Identities=12% Similarity=0.031 Sum_probs=178.9
Q ss_pred HHHHHHccCChHHHHHHHccCCCC-CcchHHHHHHHHHccCCh---hHHHHHHhcCCCCCcchHHHHHHHHHhCC-----
Q 005454 65 LLHFYAKSGKLFYARDLFDKMPLR-DIISWNALLSAHARSGSV---QDLRALFDKMPIRDSVSYNTAIAGFANKG----- 135 (696)
Q Consensus 65 li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g----- 135 (696)
+...+.+.|++++|.++|.+..++ ++..+..|..+|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 445556667777777777665442 455556666666666666 77777777766556666666666555554
Q ss_pred ChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCh---HHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC----CHH
Q 005454 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL---RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG----EID 208 (696)
Q Consensus 136 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~ 208 (696)
++++|+..|++..+.|.. ..+..+...+...+.. ..+.+.+......| ++.....|...|...+ ..+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 667888888888776532 2455555555444432 23444444444444 3455666777777766 456
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhCC---CchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc----CCHHHHHHHHH
Q 005454 209 KARWLFDRMNNRNLVSWNLMISGYLKNG---QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT----GRIDDAGRLFH 281 (696)
Q Consensus 209 ~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~A~~~~~ 281 (696)
.+..++......++.++..|...|...| +.++|++.|++..+.| .++...+..+...|... ++.++|...|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 6666777777767778888888888888 8888888888888876 23333334455555433 56677777766
Q ss_pred hccCCChhHHHHHHHH-H--HhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCch
Q 005454 282 VIKEKDNVCWTTMIVG-Y--TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358 (696)
Q Consensus 282 ~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 358 (696)
.....++..+..+... | ...+++++|++.|++..+.| +.
T Consensus 242 ~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--------------------------------------~~ 283 (452)
T 3e4b_A 242 KIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--------------------------------------QP 283 (452)
T ss_dssp HHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--------------------------------------CH
T ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--------------------------------------CH
Confidence 6553345555555554 3 34556666666666655443 23
Q ss_pred HHHHHHHhhHHhcC-----ChHHHHHHHhcCCCCCchHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005454 359 LVSSALIDMYCKCG-----VTDDAWTVFNMMPTRNVVSWNSMINGYAQ----NGQDLEALALYDKLLQENLKPDSFTFVS 429 (696)
Q Consensus 359 ~~~~~li~~y~~~g-----~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 429 (696)
.....|..+|. .| +.++|...|++....++..+..|...|.. ..+.++|..+|++..+.| .|+ ....
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-~~~--A~~~ 359 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-QNS--ADFA 359 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-CTT--HHHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-hHH--HHHH
Confidence 33334444443 23 55555555555543344445555544444 225566666666655544 222 2223
Q ss_pred HHHHHhc----CCcHHHHHHHHHHhHH
Q 005454 430 VLSACLH----ADLFERGQNHFDSISA 452 (696)
Q Consensus 430 ll~a~~~----~g~~~~a~~~~~~m~~ 452 (696)
|...|.. ..+.++|..+|+...+
T Consensus 360 Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 360 IAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 3333322 2355666666655544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.9e-13 Score=140.09 Aligned_cols=373 Identities=9% Similarity=-0.015 Sum_probs=195.8
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCH---HHHHHHHHhcCCCChhHHHHHHHHHHhCC-----
Q 005454 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI---DKARWLFDRMNNRNLVSWNLMISGYLKNG----- 236 (696)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g----- 236 (696)
.+.+.|++++|.+++....+.| +...+..|..+|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 3344555555555555555554 222333444455555665 66777666665555555555555444444
Q ss_pred CchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHH---HHHHHHhcc-CCChhHHHHHHHHHHhcCChhHHHHHHH
Q 005454 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD---AGRLFHVIK-EKDNVCWTTMIVGYTQNGKEEDALILFN 312 (696)
Q Consensus 237 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~---A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (696)
++++|+..|++..+.|. ...+..+...|...+..+. +.+.+.... ..+...+..+...|...+.++++.....
T Consensus 89 ~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 55677777777766552 2245555555554443222 223333222 2345566666666666665544444322
Q ss_pred HhccCCCCCCccchHHHHHHHHhhc---CchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhc----CChHHHHHHHhcCC
Q 005454 313 EMLSEDVRPDKFSISSVVSSCAKLA---SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC----GVTDDAWTVFNMMP 385 (696)
Q Consensus 313 ~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~~~ 385 (696)
...+.-...+...+..+...+...| +.++|...+....+.|.. +...+..|..+|... ++.++|...|+...
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 2222112223335566666666666 677777777777776643 444445566666544 67778888877666
Q ss_pred CCCchHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC-----cHHHHHHHHHHhHHhhCCC
Q 005454 386 TRNVVSWNSMING-Y--AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD-----LFERGQNHFDSISAVHGIT 457 (696)
Q Consensus 386 ~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~ 457 (696)
..++..+..+... | ...++.++|++.|++..+.| +...+..+...|. .| ++++|..+|++.. .
T Consensus 245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~ 315 (452)
T 3e4b_A 245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----G 315 (452)
T ss_dssp GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----T
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----C
Confidence 4455667777666 3 45678888888888887765 4555555555555 34 7788888777654 2
Q ss_pred CChHHHHHHHHHHhc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCchH
Q 005454 458 PSLDHYACMINLLGR----SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 458 p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
-+...+..|..+|.. ..++++|.++|++.-...+......|...|.. ..|.++|...++++.+.++......
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~ 395 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDL 395 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345566666666655 34778888888765444444455556555553 4577888888888777665333222
Q ss_pred HHHHHHHhhcCChhHHHHHHHHhh
Q 005454 530 IMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 530 ~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
...+......++.++|.++.++-+
T Consensus 396 l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 396 ATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHH
Confidence 222222233345555665555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-13 Score=131.13 Aligned_cols=251 Identities=12% Similarity=0.017 Sum_probs=136.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccc----hHHHHH
Q 005454 259 TVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS----ISSVVS 331 (696)
Q Consensus 259 t~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~ 331 (696)
.+......+...|++++|...|+...+ .+...|..+...|...|++++|++.+++..+.+ ++... +..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHH
Confidence 344455566677777777777766542 244466666677777777777777777766532 22222 455555
Q ss_pred HHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHH
Q 005454 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEA 408 (696)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 408 (696)
.+...|+++.|...+..+.+.... +..++..+...|...|++++|...|++... .+...|..+...+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666655432 344555555555555555555555555442 2333444444122223355555
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCc---HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHH
Q 005454 409 LALYDKLLQENLKPD-SFTFVSVLSACLHADL---FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484 (696)
Q Consensus 409 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 484 (696)
++.|++..+. .|+ ...+..+..++...|+ +++|...++.+.+...-.|+.. -
T Consensus 162 ~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~--------------------- 217 (272)
T 3u4t_A 162 DSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K--------------------- 217 (272)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H---------------------
T ss_pred HHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h---------------------
Confidence 5555555542 222 2333333333333333 3334444433332211111100 0
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 485 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
.....+|..+...+...|++++|...++++++++|+++.++..+..+....+
T Consensus 218 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 218 ----DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 0012467778888899999999999999999999999988888776665544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=133.08 Aligned_cols=243 Identities=9% Similarity=0.014 Sum_probs=190.6
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcC-chhHHHHHHHHHHhCCCCchHHHHHHH
Q 005454 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLAS-LYHGQVVHGKAVVLGVDDDLLVSSALI 365 (696)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 365 (696)
...|..+...+...|++++|++.|++.+.. .|+ ...|..+..++...|+ +++|...+..+++.... +..+|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 345777777788888888888888888763 343 4556667777777885 88888888888887664 677888888
Q ss_pred hhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-CCcH
Q 005454 366 DMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP-DSFTFVSVLSACLH-ADLF 440 (696)
Q Consensus 366 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~-~g~~ 440 (696)
.+|.+.|++++|+..|+++. ..+...|..+..++...|++++|+..|+++++. .| +...|..+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 88888899999998888775 457778999999999999999999999999984 45 45788888888888 6665
Q ss_pred HHH-----HHHHHHhHHhhCCCC-ChHHHHHHHHHHhccC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-----
Q 005454 441 ERG-----QNHFDSISAVHGITP-SLDHYACMINLLGRSS--DVDKAVDLIKSLPHKP-NSLIWSTLLSVCAMKG----- 506 (696)
Q Consensus 441 ~~a-----~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g----- 506 (696)
++| +..|+++.+. .| +...|..+..+|...| ++++|.+.++++...| +...+..|...+...|
T Consensus 252 ~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 777 4778877753 34 4678888889998888 6899999988874444 4568888888888764
Q ss_pred ---C-hHHHHHHHHHH-HhcCCCCCchHHHHHHHHhh
Q 005454 507 ---D-IKHGEMAARHL-FELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 507 ---~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 538 (696)
+ +++|..+++++ ++++|.....|..++..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58999999999 99999998888888776654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-12 Score=124.27 Aligned_cols=196 Identities=9% Similarity=-0.022 Sum_probs=144.6
Q ss_pred hHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005454 358 LLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434 (696)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 434 (696)
...+..+...|...|++++|...|+.+. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4555666677777777777777777654 3355677777777888888888888888877742 33456677777777
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHH
Q 005454 435 LHADLFERGQNHFDSISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a 511 (696)
...|++++|.++++.+.+ .+..| +...+..+...|...|++++|.+.+++... .| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 788888888888887765 22344 356677777888888888888888776422 23 466778888888888888888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
...++++++..|.++..+..++.+|...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888887653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-11 Score=120.85 Aligned_cols=224 Identities=13% Similarity=-0.002 Sum_probs=135.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHh----hcCchhHHHHHHHHHHhCCCCchHHHH
Q 005454 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK----LASLYHGQVVHGKAVVLGVDDDLLVSS 362 (696)
Q Consensus 287 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 362 (696)
+..++..+...|...|++++|+..|++..+. -+...+..+...+.. .++++.|...+..+.+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 4555666666677777777777777766652 122333334444444 444444444444444432
Q ss_pred HHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 005454 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ----NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH-- 436 (696)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-- 436 (696)
+..++..+...|.. .+++++|+..|++..+.+ +..++..+...+..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 34455555555555 666666666666666543 44555555555655
Q ss_pred --CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 005454 437 --ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR----SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM----KG 506 (696)
Q Consensus 437 --~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g 506 (696)
.+++++|..+|++..+. + +...+..+...|.. .+++++|.+.+++.....+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 66666666666666552 2 34455556666655 66777777666654333455666667777777 77
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh----cCChhHHHHHHHHhhhCC
Q 005454 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAA----CGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 556 (696)
++++|...++++++.+| +..+..++.+|.. .|++++|.+.+++..+.|
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777777777777765 5567777777777 777777777777776644
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.5e-12 Score=120.25 Aligned_cols=196 Identities=10% Similarity=0.009 Sum_probs=151.1
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 433 (696)
+..++..+...|...|++++|...|+.+. +.+...|..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45566677777778888888888777654 3456677888888888888888888888887743 3356677777788
Q ss_pred HhcC-CcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChH
Q 005454 434 CLHA-DLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIK 509 (696)
Q Consensus 434 ~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~ 509 (696)
+... |++++|..+++.+.+ .+..|+ ...+..+...+...|++++|.+.++++.. .| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888876 233343 56777788888888888888888876432 33 4667888888888889999
Q ss_pred HHHHHHHHHHhcCC-CCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 510 HGEMAARHLFELEP-INAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 510 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+|...++++++..| .++..+..++.++...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999888888 8888888888888889999998888888765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=120.29 Aligned_cols=206 Identities=15% Similarity=0.050 Sum_probs=147.3
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhh
Q 005454 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367 (696)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 367 (696)
...|..+...+...|++++|++.|+++... .. .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------------------------------~~-~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI-----------------------------------DP-SSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH-----------------------------------CT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------------------------CC-ChHHHHHHHHHH
Confidence 345666666666666666666666666543 21 134445555566
Q ss_pred HHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHH
Q 005454 368 YCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERG 443 (696)
Q Consensus 368 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 443 (696)
|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666665543 23556677777888888888888888888877434454 45677777788888888888
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005454 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-H-KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521 (696)
Q Consensus 444 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (696)
..+|+.+.+. .+.+...+..++..|...|++++|.+.++++. . +.+...+..+...+...|+.++|...++++++.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888888763 23346778888888999999999998887743 2 345667888888899999999999999999999
Q ss_pred CCCCCchHHH
Q 005454 522 EPINAGPYIM 531 (696)
Q Consensus 522 ~p~~~~~~~~ 531 (696)
.|+++.....
T Consensus 239 ~p~~~~~~~~ 248 (252)
T 2ho1_A 239 YPGSLEYQEF 248 (252)
T ss_dssp CTTSHHHHHH
T ss_pred CCCCHHHHHH
Confidence 9988765543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=126.04 Aligned_cols=195 Identities=12% Similarity=0.114 Sum_probs=134.4
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 433 (696)
....+..+...+...|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 34555566667777777777777777654 2355677777888888888888888888877742 3345677777777
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a 511 (696)
+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++++.. +.+...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888887763 234566777788888888888888888876432 23566788888888888888888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
...++++++..|.++..+..++.+|...|++++|.+.+++..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 8888888888888888888888888888888888888888765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-11 Score=120.46 Aligned_cols=226 Identities=11% Similarity=-0.010 Sum_probs=161.3
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhccCC-ChhHHHHHHHHHHh----cCChhHHHHHHHHhccCCCCCCccchHHHH
Q 005454 256 DEVTVSNILGACFQTGRIDDAGRLFHVIKEK-DNVCWTTMIVGYTQ----NGKEEDALILFNEMLSEDVRPDKFSISSVV 330 (696)
Q Consensus 256 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 330 (696)
+..++..+...|...|++++|...|++..++ +...+..+...|.. .+++++|++.|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4567778888899999999999999987754 66788889999999 999999999999998765 555666666
Q ss_pred HHHHh----hcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHH----c
Q 005454 331 SSCAK----LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ----N 402 (696)
Q Consensus 331 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~ 402 (696)
..+.. .++.+.|...+..+.+.+ +.. ++..+...|.. .
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~-------------------------------a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAE-------------------------------GCASLGGIYHDGKVVT 127 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH-------------------------------HHHHHHHHHHHCSSSC
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---Ccc-------------------------------HHHHHHHHHHcCCCcc
Confidence 66666 667777777766666543 333 44444455555 5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc----cC
Q 005454 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLH----ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR----SS 474 (696)
Q Consensus 403 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g 474 (696)
+++++|+..|++..+.+ +...+..+...+.. .+++++|..+|++..+. .+...+..+..+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCc
Confidence 66666666666666644 34445555555555 66777777777766652 234556666777777 77
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCC
Q 005454 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 475 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 525 (696)
++++|.+.+++.....+...+..|...+.. .+++++|...++++++++|++
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 777777777764333346677778888887 889999999999999988754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=125.77 Aligned_cols=181 Identities=8% Similarity=0.028 Sum_probs=133.0
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 433 (696)
+...+..+...|.+.|++++|...|+.+. +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTV 134 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34455555566666666666666665543 2355677777788888888888888888887743 3456677777788
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a 511 (696)
+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++++.. +.+..+|..+...+...|++++|
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 88888888888888888763 234567788888888899999999888876432 23567899999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 512 EMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
...++++++++|+++.++..++.+....|
T Consensus 213 ~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 213 LEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999999999999888887776654443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.1e-12 Score=119.47 Aligned_cols=192 Identities=16% Similarity=0.037 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhH
Q 005454 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368 (696)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 368 (696)
..|..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...++.+++..+. +...+..+...|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 344444445555555555555555544321 112233334444444444444444444444444332 344444455555
Q ss_pred Hhc-----------CChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005454 369 CKC-----------GVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434 (696)
Q Consensus 369 ~~~-----------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 434 (696)
.+. |++++|...|++.. +.+...|..+...|...|++++|+..|++.++.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 554 55555555555443 2234455566666666666666666666666644 4555566666666
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC
Q 005454 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 486 (696)
...|++++|+..|+.+.+. -+.+...+..+..++.+.|++++|.+.+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666542 1223455555666666666666666655543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-11 Score=118.30 Aligned_cols=226 Identities=11% Similarity=-0.024 Sum_probs=180.0
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC--CCh----hHHHHHHH
Q 005454 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE--KDN----VCWTTMIV 296 (696)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~ 296 (696)
..+......+...|++++|+..|++..+.. +.+...+..+...|...|++++|...|+...+ ++. ..|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345567788999999999999999998864 23455888899999999999999999998765 222 24889999
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHH-hhHHhcCChH
Q 005454 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI-DMYCKCGVTD 375 (696)
Q Consensus 297 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~y~~~g~~~ 375 (696)
.+...|++++|++.|++..+.. +.+..++..+...+...|+++.|...+..+++... .+...+..+. ..|. .++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~-~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYY-NKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999999998752 33556788889999999999999999999988743 3667777777 5554 45999
Q ss_pred HHHHHHhcCC---CCCchHHHHHHHHHHHcCC---hHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHhcCCcHHH
Q 005454 376 DAWTVFNMMP---TRNVVSWNSMINGYAQNGQ---DLEALALYDKLLQEN-LKPDS------FTFVSVLSACLHADLFER 442 (696)
Q Consensus 376 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~~ 442 (696)
+|...|+.+. +.+...|..+...+...|+ .++|...|++..+.. -.|+. .+|..+...+...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999776 3456788888889998888 888999999987732 12432 466667777788888888
Q ss_pred HHHHHHHhHH
Q 005454 443 GQNHFDSISA 452 (696)
Q Consensus 443 a~~~~~~m~~ 452 (696)
|.++|+.+.+
T Consensus 240 A~~~~~~al~ 249 (272)
T 3u4t_A 240 ADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888775
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-11 Score=116.07 Aligned_cols=208 Identities=12% Similarity=0.023 Sum_probs=146.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHh
Q 005454 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366 (696)
Q Consensus 287 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 366 (696)
+...|..+...+...|++++|++.|+++.+. .. .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------------------------------~~-~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS-----------------------------------DP-KNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----------------------------------Cc-cchHHHHHHHH
Confidence 3445666666666666666666666666543 21 12344555555
Q ss_pred hHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHH
Q 005454 367 MYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQN-GQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFE 441 (696)
Q Consensus 367 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 441 (696)
.|...|++++|...|+.+. +.+...|..+...|... |++++|+..|+++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 5666666666666665543 23556677777888888 888888888888877333444 456777777888888888
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--C-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005454 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--K-PNSLIWSTLLSVCAMKGDIKHGEMAARHL 518 (696)
Q Consensus 442 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (696)
+|...++.+.+. .+.+...+..++..+.+.|++++|.+.+++... + .+...+..+...+...|+.+.+...++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 888888888763 233467788888888889999999888876432 2 45667777777888999999999999999
Q ss_pred HhcCCCCCchHHHH
Q 005454 519 FELEPINAGPYIML 532 (696)
Q Consensus 519 ~~~~p~~~~~~~~l 532 (696)
.+.+|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999888776554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-11 Score=126.47 Aligned_cols=225 Identities=9% Similarity=0.033 Sum_probs=190.7
Q ss_pred cchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCC-hHHHHHHHhcCC---CCCchHHHHHHHHH
Q 005454 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV-TDDAWTVFNMMP---TRNVVSWNSMINGY 399 (696)
Q Consensus 324 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~ 399 (696)
..+..+...+...|+++.|...+..+++.... +..+++.+...|.+.|+ +++|+..|+++. ..+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34666677788899999999999999998764 78889999999999997 999999999876 45778999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc-cCCHH
Q 005454 400 AQNGQDLEALALYDKLLQENLKP-DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR-SSDVD 477 (696)
Q Consensus 400 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~ 477 (696)
...|++++|+..|+++++. .| +...|..+..++...|++++|+..|+++.+. -+-+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999994 45 4678889999999999999999999999873 23357889999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC--------
Q 005454 478 KA-----VDLIKSL-PHKP-NSLIWSTLLSVCAMKG--DIKHGEMAARHLFELEPINAGPYIMLSNMYAACG-------- 540 (696)
Q Consensus 478 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 540 (696)
+| ++.+++. ...| +...|..+...+...| ++++|...++++ +.+|+++.++..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4666653 3345 5679999999998888 689999999998 899999999999999999975
Q ss_pred -ChhHHHHHHHHh-hh
Q 005454 541 -RWEDVASIRSSM-KS 554 (696)
Q Consensus 541 -~~~~A~~~~~~m-~~ 554 (696)
..++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999988 44
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-11 Score=113.34 Aligned_cols=164 Identities=13% Similarity=0.114 Sum_probs=131.5
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHH
Q 005454 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 466 (696)
+...|..+...|...|++++|++.|++.++. .|+ ..++..+..++.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4556777888888888888888888888774 444 567777777888888888888888887653 23345667777
Q ss_pred HHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhH
Q 005454 467 INLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 544 (696)
...+...+++++|.+.+++.. ..| +...|..+...+...|++++|...++++++++|.++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 788888888888888887642 233 566888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhC
Q 005454 545 VASIRSSMKSK 555 (696)
Q Consensus 545 A~~~~~~m~~~ 555 (696)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999988764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-11 Score=120.80 Aligned_cols=215 Identities=13% Similarity=0.005 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHh
Q 005454 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQ 300 (696)
Q Consensus 224 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 300 (696)
+|..+...+...|++++|+..|+++.+.. +.+..++..+...|...|++++|...|+... +.+...|..+...|..
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence 34444444445555555555555444432 1233444444445555555555555554443 2345566677777777
Q ss_pred cCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHH
Q 005454 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380 (696)
Q Consensus 301 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 380 (696)
.|++++|+..|+++.+. .|+.......+..+...|+.+.|...+..+...... +...+ .++..+...++.++|...
T Consensus 124 ~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGW-NIVEFYLGNISEQTLMER 199 (275)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHH-HHHHHHTTSSCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHH-HHHHHHHHhcCHHHHHHH
Confidence 77777777777777653 455444444445555667777777777666665432 22222 355566666667777777
Q ss_pred HhcCCCCC-------chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 005454 381 FNMMPTRN-------VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447 (696)
Q Consensus 381 ~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 447 (696)
++.....+ ...|..+...|...|++++|...|++..+. .|+.. .....++...|++++|++.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTC--HHHHHHHHHHHHHHHC----
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhH--HHHHHHHHHHHHHHhhHHHH
Confidence 76655432 356666777777777777777777777663 34321 11233444555555555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=135.16 Aligned_cols=259 Identities=12% Similarity=0.011 Sum_probs=173.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCCc-----cchHHHHHHHHhhcCchhHHHHHHHHHHh----C-CCCchHHHHH
Q 005454 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDK-----FSISSVVSSCAKLASLYHGQVVHGKAVVL----G-VDDDLLVSSA 363 (696)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 363 (696)
+...+...|++++|+..|+++.+. .|+. ..+..+...+...|+++.|...+..+++. + ......++..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 344455555555555555555543 2221 23444445555555555555555554442 1 1123455666
Q ss_pred HHhhHHhcCChHHHHHHHhcCCC---------CCchHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHH
Q 005454 364 LIDMYCKCGVTDDAWTVFNMMPT---------RNVVSWNSMINGYAQNGQ-----------------DLEALALYDKLLQ 417 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~~ 417 (696)
+...|...|++++|...|++... ....+|..+...|...|+ +++|++.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 77777777777777777765542 123367777888888888 8888888877654
Q ss_pred C----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhccCCHHHHHHHHHhCCC
Q 005454 418 E----NLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LDHYACMINLLGRSSDVDKAVDLIKSLPH 488 (696)
Q Consensus 418 ~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 488 (696)
. +-.|. ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++...
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 11122 246777778888899999999999887653211122 23778888999999999999988876421
Q ss_pred ----CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------CchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 489 ----KP----NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN------AGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 489 ----~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.. ...++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 14578888889999999999999999998876443 34788999999999999999999988865
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-12 Score=135.38 Aligned_cols=208 Identities=7% Similarity=-0.044 Sum_probs=169.7
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCCh-HHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHH
Q 005454 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT-DDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKL 415 (696)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 415 (696)
+.+.+.+....... +.+...+..+...|...|++ ++|...|++.. +.+...|..+...|...|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444333322 23566777777778888888 88888887654 345678899999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhcC---------CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc--------CCHHH
Q 005454 416 LQENLKPDSFTFVSVLSACLHA---------DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS--------SDVDK 478 (696)
Q Consensus 416 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~~~~ 478 (696)
++ +.|+...+..+...+... |++++|+..|+++.+. -+.+...|..+..+|... |++++
T Consensus 164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 88 468888888888899998 9999999999998863 233477888899999888 99999
Q ss_pred HHHHHHhCCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 479 AVDLIKSLPH-KP----NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 479 A~~~~~~~~~-~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
|.+.|++... .| +...|..+..++...|++++|...++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999987533 45 77799999999999999999999999999999999999999999999999999999866544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-12 Score=132.74 Aligned_cols=196 Identities=12% Similarity=0.043 Sum_probs=133.6
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCCC-----CC----chHHHHHHHHHHHcCC--------------------hHHHH
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMPT-----RN----VVSWNSMINGYAQNGQ--------------------DLEAL 409 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 409 (696)
.++..+...|...|++++|...|+.... ++ ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3455566666666676666666655431 11 2366667777777777 77777
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhccCCHHHHH
Q 005454 410 ALYDKLLQE----NLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LDHYACMINLLGRSSDVDKAV 480 (696)
Q Consensus 410 ~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 480 (696)
+.+++..+. +-.|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 777765441 11122 235666777778888888888888877653221222 236777888888888888888
Q ss_pred HHHHhCCC----CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------CchHHHHHHHHhhcCChhHHH
Q 005454 481 DLIKSLPH----KPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN------AGPYIMLSNMYAACGRWEDVA 546 (696)
Q Consensus 481 ~~~~~~~~----~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 546 (696)
..+++... .++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88765321 112 4477788888888899999999998888875443 446788899999999999999
Q ss_pred HHHHHhhh
Q 005454 547 SIRSSMKS 554 (696)
Q Consensus 547 ~~~~~m~~ 554 (696)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887754
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-09 Score=118.59 Aligned_cols=413 Identities=10% Similarity=0.007 Sum_probs=279.3
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCC---hhHHHHHHHHhHHCC-CCCCcchHH
Q 005454 88 RDIISWNALLSAHARSGSVQDLRALFDKMPI---RDSVSYNTAIAGFANKGF---SREALQVFSRMQKDR-FEPTDYTHV 160 (696)
Q Consensus 88 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~~~t~~ 160 (696)
.|..+|..++....+.+.++.|+.+|+.+.. .....|..-+..-.+.++ ++.+.++|++..... ..|+...|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 3889999999999999999999999998863 355678888888888898 999999999998753 237777777
Q ss_pred HHHHHHHccCCh--------HHHHHHHHHHHH-cCC-CCc-hhHHHHHHHHHHc---------CCCHHHHHHHHHhcCC-
Q 005454 161 SALNACAQLLDL--------RRGKQIHGKIVV-GNL-GGN-VFVRNALTDMYAK---------GGEIDKARWLFDRMNN- 219 (696)
Q Consensus 161 ~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~- 219 (696)
.-+.-..+.++. +...++|+.++. .|. .++ ..+|...+..... .++++.+.++|++...
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 777665555543 334577777664 366 543 5688888876543 3457888999988875
Q ss_pred CCh---hHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh-------ccC----
Q 005454 220 RNL---VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV-------IKE---- 285 (696)
Q Consensus 220 ~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~-------~~~---- 285 (696)
|.. .+|......--..+ ...+..++.+. ...++.|...+.. +..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVN-QLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred ccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 211 23332222111111 11122222111 0112222222221 100
Q ss_pred ----------C--C------hhHHHHHHHHHHhcC-------ChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCch
Q 005454 286 ----------K--D------NVCWTTMIVGYTQNG-------KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340 (696)
Q Consensus 286 ----------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 340 (696)
| + ...|...+.---.++ ..+.+..+|++.+.. .+-+...|.....-+...|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHH
Confidence 0 0 134555555433332 123456678877764 3445666777777777888888
Q ss_pred hHH-HHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-------------CC------------chHHHH
Q 005454 341 HGQ-VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-------------RN------------VVSWNS 394 (696)
Q Consensus 341 ~a~-~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~ 394 (696)
.|. .+++.++...+ .+...+-.++....+.|+++.|..+|+.+.. |+ ...|..
T Consensus 361 ~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 996 99999987543 4677788888999999999999999987653 21 236888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc
Q 005454 395 MINGYAQNGQDLEALALYDKLLQE-NLKPDSFTFVSVLSACLH-ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472 (696)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 472 (696)
.+....+.|..+.|..+|.+.++. + .+....|......-.+ .++.+.|..+|+...+.+ +-+...+...++....
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHh
Confidence 888888899999999999999885 2 1223334332222223 355899999999999854 3455667788898889
Q ss_pred cCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 473 SSDVDKAVDLIKSLPH-KP----NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 473 ~g~~~~A~~~~~~~~~-~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
.|+.+.|..+|++... .| ....|...+.--..+|+.+.+..+.+++.+..|+++.
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 9999999999998543 34 2458999999889999999999999999999998753
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.3e-12 Score=126.01 Aligned_cols=259 Identities=12% Similarity=0.057 Sum_probs=171.0
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCCc-----cchHHHHHHHHhhcCchhHHHHHHHHHHh----CCC-CchHHHHHH
Q 005454 295 IVGYTQNGKEEDALILFNEMLSEDVRPDK-----FSISSVVSSCAKLASLYHGQVVHGKAVVL----GVD-DDLLVSSAL 364 (696)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 364 (696)
...+...|++++|+..|+++.+. .|+. ..+..+...+...|+++.|...+..+.+. +.. ....++..+
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 34444555555555555555443 1221 23334444455555555555555544332 111 124456667
Q ss_pred HhhHHhcCChHHHHHHHhcCCC-----CC----chHHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 005454 365 IDMYCKCGVTDDAWTVFNMMPT-----RN----VVSWNSMINGYAQNGQ--------------------DLEALALYDKL 415 (696)
Q Consensus 365 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m 415 (696)
...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777777887777777765431 22 2367777778888888 88888888776
Q ss_pred HHC----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhccCCHHHHHHHHHhC
Q 005454 416 LQE----NLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LDHYACMINLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 416 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 486 (696)
... +-.|. ..++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542 11121 246677777888889999999998887653211122 247788888999999999999888764
Q ss_pred CC----CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------CchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 487 PH----KPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN------AGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 487 ~~----~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
.. .++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|...|++++|.+.+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 21 122 4577888889999999999999999998876543 337889999999999999999999988
Q ss_pred hhC
Q 005454 553 KSK 555 (696)
Q Consensus 553 ~~~ 555 (696)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 663
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=129.29 Aligned_cols=153 Identities=13% Similarity=0.040 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC----hH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQEN-LKPD----SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LD 461 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 461 (696)
+|..+...|...|++++|+..|++..+.. -.++ ..++..+...+...|++++|..+++.......-.++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 56666677777777777777777765421 0111 236666777777888888888888776543211111 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CCc
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSLPH----KPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI------NAG 527 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 527 (696)
.+..+...|...|++++|.+.+++... .++ ..++..+...+...|++++|...+++++++.+. ...
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 677788888888888888888765321 122 457788888999999999999999999887432 345
Q ss_pred hHHHHHHHHhhcCChh
Q 005454 528 PYIMLSNMYAACGRWE 543 (696)
Q Consensus 528 ~~~~l~~~~~~~g~~~ 543 (696)
++..++.+|...|+..
T Consensus 349 ~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhHhH
Confidence 6778888888888764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-10 Score=115.11 Aligned_cols=219 Identities=9% Similarity=0.057 Sum_probs=154.4
Q ss_pred hHHHHHHHHhccCCCCCCccchHHHHHHHH-------hhcCc-------hhHHHHHHHHHHhCCCCchHHHHHHHhhHHh
Q 005454 305 EDALILFNEMLSEDVRPDKFSISSVVSSCA-------KLASL-------YHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370 (696)
Q Consensus 305 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 370 (696)
++|+.+|++.+.. .+-+...|......+. ..|+. ++|..+++.+++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5666777776653 1223334444444443 24665 7778888877773222356678888888888
Q ss_pred cCChHHHHHHHhcCCC--C-Cch-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-cCCcHHHHHH
Q 005454 371 CGVTDDAWTVFNMMPT--R-NVV-SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL-HADLFERGQN 445 (696)
Q Consensus 371 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 445 (696)
.|++++|..+|++... | +.. .|..++..+.+.|+.++|..+|++.++.. +++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887653 3 343 78888888888899999999999888753 233444444333322 3688999999
Q ss_pred HHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC----CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005454 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH----KP--NSLIWSTLLSVCAMKGDIKHGEMAARHLF 519 (696)
Q Consensus 446 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (696)
+|+...+.. +.+...|..+++.+.+.|++++|..+|++... .| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 998887643 33567788888888888999999888877432 34 35688888888888899999999999999
Q ss_pred hcCCCCCc
Q 005454 520 ELEPINAG 527 (696)
Q Consensus 520 ~~~p~~~~ 527 (696)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 88887653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.3e-11 Score=121.95 Aligned_cols=227 Identities=10% Similarity=0.029 Sum_probs=103.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCC-CCC----ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCC------chHHHH
Q 005454 294 MIVGYTQNGKEEDALILFNEMLSEDV-RPD----KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD------DLLVSS 362 (696)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 362 (696)
....+...|++++|+..|++....-. .+| ..++..+...+...|+++.|...+..+.+..... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 34445566777777777766654210 111 1234444445555555555555555544421110 123444
Q ss_pred HHHhhHHhcCChHHHHHHHhcCCC-----CC----chHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 005454 363 ALIDMYCKCGVTDDAWTVFNMMPT-----RN----VVSWNSMINGYAQNGQDLEALALYDKLLQE----NLKPD-SFTFV 428 (696)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~ 428 (696)
.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|++.|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 555555555555555555544331 11 124555555566666666666666555441 11122 23455
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHhhC---CCCChHHHHHHHHHHhccCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 005454 429 SVLSACLHADLFERGQNHFDSISAVHG---ITPSLDHYACMINLLGRSSD---VDKAVDLIKSLPHKPNS-LIWSTLLSV 501 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~~~---~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~ 501 (696)
.+...+...|++++|..+++...+... -+.....+..+...|...|+ +++|..++++....|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 555555555666666555555443211 01111223344445555555 44555555444332221 133333444
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 005454 502 CAMKGDIKHGEMAARHLFE 520 (696)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~ 520 (696)
+...|++++|...++++++
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 4444444444444444433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-11 Score=121.35 Aligned_cols=134 Identities=13% Similarity=0.039 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC----hH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENL-KPD----SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LD 461 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 461 (696)
.+..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|..+++.......-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 455566666666666666666666554210 011 125566666677777777777777766542111111 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSLPH----KPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
.+..+...|...|++++|.+.+++... .++ ..++..+...+...|++++|...+++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 667777788888888888777765321 112 347778888889999999999999999887754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.2e-11 Score=126.34 Aligned_cols=266 Identities=12% Similarity=0.029 Sum_probs=151.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCCc-----chHHHHHHHHHhcCCHHHHHHHHHhccC---------CChhHHHH
Q 005454 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDE-----VTVSNILGACFQTGRIDDAGRLFHVIKE---------KDNVCWTT 293 (696)
Q Consensus 228 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~ 293 (696)
+...+...|++++|+..|++..+.+ |+. ..+..+...|...|++++|...|++..+ .....+..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555555555555555555432 221 2344444445555555555555544321 12335666
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCC----CC-CccchHHHHHHHHhhcC----------chhHHHHHHHHHHhCCCCch
Q 005454 294 MIVGYTQNGKEEDALILFNEMLSEDV----RP-DKFSISSVVSSCAKLAS----------LYHGQVVHGKAVVLGVDDDL 358 (696)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~----~p-~~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~ 358 (696)
+...|...|++++|+..|++...... .| ...++..+...+...|+ .+.+...
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~------------- 198 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA------------- 198 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-------------
Confidence 66777777777777777776654200 00 11123333333344444 1111110
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCC-------C--CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----H
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMP-------T--RNVVSWNSMINGYAQNGQDLEALALYDKLLQENL-KPD----S 424 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~-------~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~ 424 (696)
+++|...|++.. . .....|..+...|...|++++|+..|++..+... .++ .
T Consensus 199 ---------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 199 ---------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 444443333221 1 0123566667777777777777777777655210 011 1
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC----ChHHHHHHHHHHhccCCHHHHHHHHHhCCC----CCC----H
Q 005454 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITP----SLDHYACMINLLGRSSDVDKAVDLIKSLPH----KPN----S 492 (696)
Q Consensus 425 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~p~----~ 492 (696)
.++..+...+...|++++|..+++.......-.. ....+..+...|...|++++|.+.+++... .++ .
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 2666777778888888888888877665321111 145677888888888888888888876421 112 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 523 (696)
.++..+...+...|++++|...+++++++.+
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 4778888899999999999999999998775
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.28 E-value=6.6e-11 Score=108.49 Aligned_cols=167 Identities=16% Similarity=0.085 Sum_probs=139.1
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 433 (696)
+..+|..+...|.+.|++++|+..|++.. +.++.+|..+...|.+.|++++|+..+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56788888999999999999999998765 3467788999999999999999999999988743 3345667777778
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a 511 (696)
+...++++.+...+...... .+.+...+..+...|.+.|++++|++.|++.. ..| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999988763 34456788889999999999999999998743 244 567899999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 005454 512 EMAARHLFELEPINA 526 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~ 526 (696)
...++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999753
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-08 Score=110.76 Aligned_cols=227 Identities=8% Similarity=-0.002 Sum_probs=139.3
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHH-HHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 005454 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAG-RLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316 (696)
Q Consensus 241 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~-~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (696)
+..+|++.... ++-+...|......+...|+.++|. .+|++.. +.+...|-..+...-+.|++++|.++|++++.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556666554 2334555666666666667766675 6666554 23444566666667777777777777777664
Q ss_pred CC---------CCCC------------ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC-Ch
Q 005454 317 ED---------VRPD------------KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG-VT 374 (696)
Q Consensus 317 ~g---------~~p~------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~ 374 (696)
.. -.|+ ...|...+....+.|.++.|+.++..+.+.-......+|...+.+-.++| +.
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 31 0132 22466666666677778888888888877511122333433333334444 47
Q ss_pred HHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 005454 375 DDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP--DSFTFVSVLSACLHADLFERGQNHFDS 449 (696)
Q Consensus 375 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~ 449 (696)
+.|..+|+... ..+...|...+......|+.+.|..+|++.+.....+ ....|...+.--...|+.+.+..+.++
T Consensus 487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566 (679)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887665 3455667777777777888888888888887753222 124566666666677888888888888
Q ss_pred hHHhhCCCCChHHHHHHHHHHh
Q 005454 450 ISAVHGITPSLDHYACMINLLG 471 (696)
Q Consensus 450 m~~~~~~~p~~~~~~~li~~~~ 471 (696)
+.+.. |+......+++-|.
T Consensus 567 ~~~~~---P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 567 FFEKF---PEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHS---TTCCHHHHHHHHTC
T ss_pred HHHhC---CCCcHHHHHHHHhc
Confidence 87642 44444444555554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.3e-11 Score=130.04 Aligned_cols=162 Identities=22% Similarity=0.282 Sum_probs=135.6
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHH
Q 005454 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDHYAC 465 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 465 (696)
+..+|+.|...|.+.|++++|++.|++.++ +.|+ ..++..+..++.+.|++++|+..|++..+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 345778888888888888888888888887 4555 567888888888888888888888888753 344 678888
Q ss_pred HHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChh
Q 005454 466 MINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 543 (696)
+..+|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888899999999998888764 3345 46689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 005454 544 DVASIRSSMKS 554 (696)
Q Consensus 544 ~A~~~~~~m~~ 554 (696)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-10 Score=105.51 Aligned_cols=157 Identities=14% Similarity=0.073 Sum_probs=90.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccC
Q 005454 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474 (696)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 474 (696)
+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+...+...|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Confidence 3333444444444444444433321 122333444444444444444444444444431 1223344444555555555
Q ss_pred CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 475 DVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 475 ~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
++++|.+.++++.. +.+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.+++.
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555544211 2345667777777788888888888888888888888888888888888888888888888777
Q ss_pred hh
Q 005454 553 KS 554 (696)
Q Consensus 553 ~~ 554 (696)
.+
T Consensus 171 ~~ 172 (186)
T 3as5_A 171 NE 172 (186)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-10 Score=121.32 Aligned_cols=225 Identities=11% Similarity=-0.051 Sum_probs=171.5
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHh----CCCC-chHHHHHHHhhHHhcCChHHHHHHHhcCCC-----CC-----chHHH
Q 005454 329 VVSSCAKLASLYHGQVVHGKAVVL----GVDD-DLLVSSALIDMYCKCGVTDDAWTVFNMMPT-----RN-----VVSWN 393 (696)
Q Consensus 329 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 393 (696)
....+...|+++.|...+..+.+. +..+ ...++..+...|...|+++.|...+++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445567889999999999999875 1111 346788899999999999999988876541 22 34788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhh---CC-CCChHHHH
Q 005454 394 SMINGYAQNGQDLEALALYDKLLQENL-KPD----SFTFVSVLSACLHADLFERGQNHFDSISAVH---GI-TPSLDHYA 464 (696)
Q Consensus 394 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~-~p~~~~~~ 464 (696)
.+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|..+++...+.. +. +.....+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999999876310 122 2478888889999999999999999887621 22 22356788
Q ss_pred HHHHHHhccCCHHHHHHHHHhCCC------CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 465 CMINLLGRSSDVDKAVDLIKSLPH------KPN-SLIWSTLLSVCAMKGD---IKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~~~~------~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
.+...|.+.|++++|.+.+++... .|. ...+..+...+...|+ +++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 999999999999999999976421 122 2235667777888888 77777777766 233445567889999
Q ss_pred HHhhcCChhHHHHHHHHhhh
Q 005454 535 MYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 535 ~~~~~g~~~~A~~~~~~m~~ 554 (696)
+|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998854
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=123.44 Aligned_cols=237 Identities=12% Similarity=0.098 Sum_probs=122.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhccC-------CCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHh------CC
Q 005454 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSE-------DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL------GV 354 (696)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 354 (696)
..+|..+...+...|++++|+..|+++.+. ........+..+...+...|+++.|...+..+++. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 446777788888888888888888887652 11112233444444455555555555555554432 11
Q ss_pred CCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHH
Q 005454 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE------NLKPD-SFTF 427 (696)
Q Consensus 355 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~ 427 (696)
.+ ....+|..+...|...|++++|+..|++..+. +-.|+ ..++
T Consensus 107 ~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp CH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred Ch------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 00 01234455555555556666666665555442 11122 2345
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHhh-----CCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhCCC----------CCC
Q 005454 428 VSVLSACLHADLFERGQNHFDSISAVH-----GITP-SLDHYACMINLLGRSSDVDKAVDLIKSLPH----------KPN 491 (696)
Q Consensus 428 ~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~p~ 491 (696)
..+...+...|++++|..+++.+.+.. +..| ....+..+...|...|++++|.+.++++.. .+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 555556666666666666666655421 1012 134555666666666666666666654321 111
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 492 -------SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 492 -------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
...+..+...+...+.+.++...++++....|..+.++..++.+|...|++++|.+++++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222223334455566666677777777777777788888888888888888888877654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=7.9e-10 Score=110.66 Aligned_cols=213 Identities=8% Similarity=0.027 Sum_probs=170.5
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHhhHH-------hcCCh-------HHHHHHHhcCCC----CCchHHHHHHHHHHH
Q 005454 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYC-------KCGVT-------DDAWTVFNMMPT----RNVVSWNSMINGYAQ 401 (696)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~----~~~~~~~~li~~~~~ 401 (696)
+.|..+++++++..+ .+..+|..++..+. +.|++ ++|..+|++... .+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 567788888888654 36778888887775 35886 899999986543 355689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh-ccCCHHH
Q 005454 402 NGQDLEALALYDKLLQENLKPDS-F-TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG-RSSDVDK 478 (696)
Q Consensus 402 ~g~~~~A~~l~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~ 478 (696)
.|++++|.++|++.++ +.|+. . .|..+...+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 56654 3 7888888899999999999999999862 2334455554444422 3799999
Q ss_pred HHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCC-CCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 479 AVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFEL---EPI-NAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 479 A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
|.++|++... .| +...|..++..+...|++++|..+++++++. .|. ....|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999987532 23 5779999999999999999999999999996 443 5567889999999999999999999998
Q ss_pred hhCCC
Q 005454 553 KSKNV 557 (696)
Q Consensus 553 ~~~~~ 557 (696)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 76443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-10 Score=107.16 Aligned_cols=187 Identities=10% Similarity=-0.046 Sum_probs=98.0
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC---C-CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP---T-RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVL 431 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 431 (696)
|+..+..+...|...|++++|...|+... + ++...|..+..++...|++++|+..|++.++ ..|+ ..++..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 34555555666666666666666665443 2 4445555556666666666666666666665 2343 34555555
Q ss_pred HHHhcCCcHHHHHHHHHHhHHhhCCCCCh-------HHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 005454 432 SACLHADLFERGQNHFDSISAVHGITPSL-------DHYACMINLLGRSSDVDKAVDLIKSL-PHKPN---SLIWSTLLS 500 (696)
Q Consensus 432 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~ 500 (696)
..+...|++++|...++...+.. +.+. ..|..+...+...|++++|.+.+++. ...|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 55666666666666666655421 1112 33455555555556666666555543 22343 234444444
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+.. .+...++++..+.+.++..|..+ .....|.+++|...+++..+
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 4432 23334445555544443333222 23334455888888887765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.5e-11 Score=120.48 Aligned_cols=238 Identities=14% Similarity=0.121 Sum_probs=144.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhccC--------C---ChhHHHHHHHHHHhcCChhHHHHHHHHhccC------CC
Q 005454 257 EVTVSNILGACFQTGRIDDAGRLFHVIKE--------K---DNVCWTTMIVGYTQNGKEEDALILFNEMLSE------DV 319 (696)
Q Consensus 257 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 319 (696)
..++..+...|...|++++|..+|+++.+ . ....+..+...|...|++++|+..+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45678888889999999999999988764 2 2446888899999999999999999998763 11
Q ss_pred CC-CccchHHHHHHHHhhcCchhHHHHHHHHHHhC------CCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHH
Q 005454 320 RP-DKFSISSVVSSCAKLASLYHGQVVHGKAVVLG------VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392 (696)
Q Consensus 320 ~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 392 (696)
.| ...++..+...+...|+++.|...+..+.+.. ..|. ....|
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHHHH
Confidence 22 23455666667777777777777777766531 1110 12234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhh------CCCCC
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQE------NLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVH------GITPS 459 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~ 459 (696)
..+...|...|++++|++.|+++.+. +-.|+ ..++..+...+...|++++|..+++.+.+.. ...+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 44555555555555555555555442 11222 2345555556666666666666666655321 01111
Q ss_pred -------hHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 460 -------LDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 460 -------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
...+..+...+...+.+.+|...++.... .| +..+|..+...|...|++++|...+++++++.|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 12223333444556666666666666543 33 3458889999999999999999999999998774
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-09 Score=103.78 Aligned_cols=205 Identities=11% Similarity=0.048 Sum_probs=160.9
Q ss_pred CCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHH
Q 005454 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMIN 397 (696)
Q Consensus 321 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 397 (696)
.|+..+......+...|+++.|...+..+++....++...+..+..+|.+.|++++|...|+... +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 34567777888899999999999999999998875677777779999999999999999999775 335668999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC---hHHHHHH
Q 005454 398 GYAQNGQDLEALALYDKLLQENLKPD-S-------FTFVSVLSACLHADLFERGQNHFDSISAVHGITPS---LDHYACM 466 (696)
Q Consensus 398 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 466 (696)
.|...|++++|+..|++.++. .|+ . ..|..+...+...|++++|+..|+.+.+ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999984 454 3 3577777888899999999999999874 4565 5678888
Q ss_pred HHHHhccCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 467 INLLGRSSDV--DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 467 i~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
...|...|+. ++|..+. ..+...+..+. ....+.+++|...++++++++|+++.+...+..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766654 3332221 12333443333 345677899999999999999999888877776643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=6.3e-09 Score=107.22 Aligned_cols=260 Identities=12% Similarity=0.069 Sum_probs=173.4
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCCcc----chHHHHHHHHhhcCchhHHHHHHHHHHhCCC-Cc----hHHHHHHH
Q 005454 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKF----SISSVVSSCAKLASLYHGQVVHGKAVVLGVD-DD----LLVSSALI 365 (696)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li 365 (696)
...+...|++++|...+++........+.. .+..+...+...|+++.|...+......... .+ ..+...+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556677777777777766542111111 2334445566677777777777766553211 11 22345677
Q ss_pred hhHHhcCChHHHHHHHhcCCC-------C----CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHH
Q 005454 366 DMYCKCGVTDDAWTVFNMMPT-------R----NVVSWNSMINGYAQNGQDLEALALYDKLLQENLK--P--DSFTFVSV 430 (696)
Q Consensus 366 ~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~l 430 (696)
..|...|++++|...+++... + ....+..+...+...|++++|...+++.....-. | ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 778888888888887775531 1 1235666778888999999999999988763211 1 12456677
Q ss_pred HHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHH-----HHHHHHhccCCHHHHHHHHHhCCC-CCC-----HHHHHHHH
Q 005454 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYA-----CMINLLGRSSDVDKAVDLIKSLPH-KPN-----SLIWSTLL 499 (696)
Q Consensus 431 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~-~p~-----~~~~~~ll 499 (696)
...+...|++++|..+++.......-......+. ..+..+...|++++|...+++... .|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7788889999999999998875322111111121 234557789999999999987643 221 23567778
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCC------chHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINA------GPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
..+...|++++|...++++++..+... ..+..++.+|...|+.++|...+++..+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888999999999999999887653322 3677889999999999999999988754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.2e-10 Score=119.83 Aligned_cols=177 Identities=8% Similarity=-0.033 Sum_probs=153.7
Q ss_pred hHHHHHHHhcCC---CCCchHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHH
Q 005454 374 TDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQD-LEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFD 448 (696)
Q Consensus 374 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 448 (696)
++.+...++... ..+...|..+...|...|++ ++|++.|++.++. .|+ ...+..+..++...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555433 34677899999999999999 9999999999984 455 6789999999999999999999999
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhcc---------CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc--------CChH
Q 005454 449 SISAVHGITPSLDHYACMINLLGRS---------SDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMK--------GDIK 509 (696)
Q Consensus 449 ~m~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~--------g~~~ 509 (696)
+..+ +.|+...+..+..+|... |++++|.+.+++.. ..| +...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9974 468888999999999999 99999999998753 234 577999999999998 9999
Q ss_pred HHHHHHHHHHhcCC---CCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 510 HGEMAARHLFELEP---INAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 510 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
+|...++++++++| .++.+|..++.+|...|++++|.+.+++..+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999988763
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.16 E-value=8.6e-10 Score=100.65 Aligned_cols=168 Identities=10% Similarity=-0.012 Sum_probs=143.3
Q ss_pred hHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005454 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434 (696)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 434 (696)
...+..+...|...|++++|...|+.+.. .+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44566778889999999999999998874 366788999999999999999999999998853 44567888888899
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHH
Q 005454 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGE 512 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~ 512 (696)
...|++++|.++++.+.+. .+.+...+..+...+...|++++|.+.+++... +.+..+|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999874 345678888999999999999999999987432 345678999999999999999999
Q ss_pred HHHHHHHhcCCCCCch
Q 005454 513 MAARHLFELEPINAGP 528 (696)
Q Consensus 513 ~~~~~~~~~~p~~~~~ 528 (696)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999999887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-08 Score=105.88 Aligned_cols=224 Identities=9% Similarity=0.008 Sum_probs=102.5
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCC-CC----ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCC------CchHHHHH
Q 005454 295 IVGYTQNGKEEDALILFNEMLSEDVR-PD----KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD------DDLLVSSA 363 (696)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~ 363 (696)
...+...|++++|+..|++....... ++ ..++..+...+...|+++.|...+..+.+.... ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 34456677777777777776543111 11 123444444555555555555555554442110 01234444
Q ss_pred HHhhHHhcCChHHHHHHHhcCCC-----CC----chHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 005454 364 LIDMYCKCGVTDDAWTVFNMMPT-----RN----VVSWNSMINGYAQNGQDLEALALYDKLLQ-----ENLKPDSFTFVS 429 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 429 (696)
+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|++.|++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 55555555555555555543321 11 12444555555555555555555555544 21 111334444
Q ss_pred HHHHHhcCCcHHHHHHHHHHhHHhhCCCCC---hHHHHHHHHHHhccCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 005454 430 VLSACLHADLFERGQNHFDSISAVHGITPS---LDHYACMINLLGRSSD---VDKAVDLIKSLPHKPNS-LIWSTLLSVC 502 (696)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~~ 502 (696)
+...+.+.|++++|..++++..+...-.++ ...+..+...|...|+ +++|..++++....|+. ..+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 555555555555555555555442111111 2233344444444444 44555555443322221 1233334444
Q ss_pred HhcCChHHHHHHHHHHH
Q 005454 503 AMKGDIKHGEMAARHLF 519 (696)
Q Consensus 503 ~~~g~~~~a~~~~~~~~ 519 (696)
...|++++|...+++++
T Consensus 347 ~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 44444444444444433
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.9e-09 Score=107.18 Aligned_cols=216 Identities=10% Similarity=0.014 Sum_probs=147.5
Q ss_pred HHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHhcCChhHHHHHHHHhccCCC-----CC-CccchHHHHH
Q 005454 267 CFQTGRIDDAGRLFHVIKE-----KD----NVCWTTMIVGYTQNGKEEDALILFNEMLSEDV-----RP-DKFSISSVVS 331 (696)
Q Consensus 267 ~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p-~~~t~~~ll~ 331 (696)
+...|++++|...|++... ++ ..++..+...|...|++++|+..+.+..+... .+ ...++..+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 4566677777766665542 11 23566677777777777777777777654211 11 1234556666
Q ss_pred HHHhhcCchhHHHHHHHHHHhC----CC-CchHHHHHHHhhHHhcCChHHHHHHHhcCCC-----C---CchHHHHHHHH
Q 005454 332 SCAKLASLYHGQVVHGKAVVLG----VD-DDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-----R---NVVSWNSMING 398 (696)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~---~~~~~~~li~~ 398 (696)
.+...|+++.|...+..+++.. .. ....++..+...|...|++++|...|++... . ...++..+...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 7777788888888777766531 11 1234677788889999999999988886653 2 24567888899
Q ss_pred HHHcCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHhcCCc---HHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHH
Q 005454 399 YAQNGQDLEALALYDKLLQENL---KPD-SFTFVSVLSACLHADL---FERGQNHFDSISAVHGITPS-LDHYACMINLL 470 (696)
Q Consensus 399 ~~~~g~~~~A~~l~~~m~~~g~---~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 470 (696)
|.+.|++++|...+++..+..- .|. ...+..+...+...++ +.+|..+++.. +..|+ ...+..+...|
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHH
Confidence 9999999999999999887321 222 2345555556777787 78888877763 22233 45677899999
Q ss_pred hccCCHHHHHHHHHhC
Q 005454 471 GRSSDVDKAVDLIKSL 486 (696)
Q Consensus 471 ~~~g~~~~A~~~~~~~ 486 (696)
...|++++|.+.+++.
T Consensus 347 ~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 9999999999998764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=107.74 Aligned_cols=198 Identities=14% Similarity=0.102 Sum_probs=122.2
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCCC-----------CCchHHHHHHHHHHHcCChHHHHHHHHHHHHC------C
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPT-----------RNVVSWNSMINGYAQNGQDLEALALYDKLLQE------N 419 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 419 (696)
...++..+...|...|++++|...|++... ....+|..+...|...|++++|++.|++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 345566667777777777777776665431 12346777777788888888888888777653 1
Q ss_pred CCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhh-----CCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhCC-----
Q 005454 420 LKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVH-----GITP-SLDHYACMINLLGRSSDVDKAVDLIKSLP----- 487 (696)
Q Consensus 420 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----- 487 (696)
-.|+ ..++..+...+...|++++|..+++++.+.. +-.| ....+..+...|.+.|++++|.+.+++..
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1232 4566777777888888888888888776531 1122 24567778888888888888888876532
Q ss_pred -----CCCC-HHHHHHHHHHHHhcCC------hHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 488 -----HKPN-SLIWSTLLSVCAMKGD------IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 488 -----~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
..+. ...|..+.......+. +..+...++......|..+.++..++.+|...|++++|.+++++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 2234433333333222 23333333333333355556788999999999999999999988754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-07 Score=95.12 Aligned_cols=159 Identities=9% Similarity=-0.033 Sum_probs=76.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCC--C--CccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCc--hHHH----H
Q 005454 293 TMIVGYTQNGKEEDALILFNEMLSEDVR--P--DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD--LLVS----S 362 (696)
Q Consensus 293 ~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~----~ 362 (696)
.+...+...|++++|...+++....... + ...++..+...+...|+++.|...+.........++ .... .
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 3444445555555555555554432111 0 011233334444455555555555555443311111 1111 1
Q ss_pred HHHhhHHhcCChHHHHHHHhcCCCCCc-------hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHH
Q 005454 363 ALIDMYCKCGVTDDAWTVFNMMPTRNV-------VSWNSMINGYAQNGQDLEALALYDKLLQE----NLKPDS-FTFVSV 430 (696)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~l 430 (696)
..+..+...|+.++|...++....++. ..+..+...+...|++++|...+++.... |..++. .++..+
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 233446677777777777776653221 13455666677777777777777665442 111111 133334
Q ss_pred HHHHhcCCcHHHHHHHHHHhH
Q 005454 431 LSACLHADLFERGQNHFDSIS 451 (696)
Q Consensus 431 l~a~~~~g~~~~a~~~~~~m~ 451 (696)
..++...|+.++|...++...
T Consensus 300 a~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 445555566666666555544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-08 Score=98.86 Aligned_cols=204 Identities=12% Similarity=0.065 Sum_probs=121.6
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCCC--C-C---chHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPT--R-N---VVSWNSMINGYAQNGQDLEALALYDKLLQENL-KPD-SFTFV 428 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 428 (696)
+...+..+...+.+.|++++|...|+.+.. | + ...+..+..+|.+.|++++|+..|++.++... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344445555566666666666666665542 2 2 33555556666666666666666666655311 111 23344
Q ss_pred HHHHHHhc--------CCcHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 005454 429 SVLSACLH--------ADLFERGQNHFDSISAVHGITPSL-DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499 (696)
Q Consensus 429 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 499 (696)
.+..++.. .|++++|+..|+.+.+.+ |+. .....+..+....+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 44445555 566666666666655432 221 1111111100000000 01245677
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhc----------CChhHHHHHHHHhhhCCCcCCCceeEE
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINA---GPYIMLSNMYAAC----------GRWEDVASIRSSMKSKNVKKFAAYSWI 566 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~s~i 566 (696)
..+...|+++.|...++++++..|+++ .++..++.+|... |++++|...+++..+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 889999999999999999999999855 4788999999877 999999999999876332
Q ss_pred EECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHH
Q 005454 567 EIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601 (696)
Q Consensus 567 ~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~ 601 (696)
.+|...+....+.++...+.+
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 245556666667776666654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=7.5e-09 Score=102.57 Aligned_cols=164 Identities=7% Similarity=-0.024 Sum_probs=84.8
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhcCCC-----CC----chHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC------
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNMMPT-----RN----VVSWNSMINGYAQN-GQDLEALALYDKLLQENLKPD------ 423 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~------ 423 (696)
+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|+..|++.++. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 344444555555555555554443321 11 23456666666664 7777777777766552 111
Q ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh-----HHHHHHHHHHhccCCHHHHHHHHHhCC-CCCCHH---
Q 005454 424 -SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL-----DHYACMINLLGRSSDVDKAVDLIKSLP-HKPNSL--- 493 (696)
Q Consensus 424 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~--- 493 (696)
..++..+...+...|++++|+.+|+...+...-.+.. ..|..+..++...|++++|...+++.. ..|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 2345566666667777777777776666531111111 134555666666677777766666532 233211
Q ss_pred ---HHHHHHHHHH--hcCChHHHHHHHHHHHhcCCCC
Q 005454 494 ---IWSTLLSVCA--MKGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 494 ---~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~ 525 (696)
.+..++.++. ..+++++|...++++.+++|..
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2333444443 2345666666666666666543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=6.4e-09 Score=103.06 Aligned_cols=200 Identities=9% Similarity=-0.024 Sum_probs=145.4
Q ss_pred CchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-----CC----chHHHHHHHHHHHcCChHHH
Q 005454 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-----RN----VVSWNSMINGYAQNGQDLEA 408 (696)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 408 (696)
++++|...+..+ ...|...|++++|...|++... .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776665 4467788999999888876542 12 45889999999999999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHHhcC-CcHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhccCCHHH
Q 005454 409 LALYDKLLQENL---KPD--SFTFVSVLSACLHA-DLFERGQNHFDSISAVHGITPS----LDHYACMINLLGRSSDVDK 478 (696)
Q Consensus 409 ~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 478 (696)
+..|++.++... .+. ..++..+...+... |++++|+..|++..+...-..+ ...+..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999876210 111 34788888899996 9999999999998764211111 3568889999999999999
Q ss_pred HHHHHHhCCC-C---CCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch-----HHHHHHHHh--hcCCh
Q 005454 479 AVDLIKSLPH-K---PNS-----LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-----YIMLSNMYA--ACGRW 542 (696)
Q Consensus 479 A~~~~~~~~~-~---p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 542 (696)
|.+.+++... . +.. ..|..+..++...|+++.|...+++.++++|..... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 9999987421 2 221 156778888899999999999999999999976653 344566664 56788
Q ss_pred hHHHHHHHHh
Q 005454 543 EDVASIRSSM 552 (696)
Q Consensus 543 ~~A~~~~~~m 552 (696)
++|.+.++++
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8988888654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=6.4e-09 Score=115.35 Aligned_cols=162 Identities=12% Similarity=0.155 Sum_probs=134.4
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLS 432 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 432 (696)
+...++.|...|.+.|++++|+..|++.. ..+..+|+.+...|.+.|++++|++.|++.++ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 46678888888888888888888888765 34567888899999999999999999999888 4565 578888888
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIK 509 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 509 (696)
++...|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.|++. ...| +...|..|..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999988763 34 4678889999999999999999999874 3355 4668899999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 005454 510 HGEMAARHLFELEP 523 (696)
Q Consensus 510 ~a~~~~~~~~~~~p 523 (696)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999888654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.93 E-value=6.8e-08 Score=93.90 Aligned_cols=175 Identities=8% Similarity=0.008 Sum_probs=126.3
Q ss_pred HHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHhHH
Q 005454 377 AWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP-DSFTFVSVLSACLHADLFERGQNHFDSISA 452 (696)
Q Consensus 377 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 452 (696)
|...|++.. .++..++..+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 566666554 2445556677788888899999999998887754322 345677777888899999999999988865
Q ss_pred hhCCCC-----ChHHHHHHHHH--Hh--ccCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-
Q 005454 453 VHGITP-----SLDHYACMINL--LG--RSSDVDKAVDLIKSLPHK-PNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL- 521 (696)
Q Consensus 453 ~~~~~p-----~~~~~~~li~~--~~--~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 521 (696)
. .| +-.+...+..+ .. ..+++++|..+|+++..+ |+..+-..|+.++...|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 45 23444444444 22 334899999999886554 55333344555788889999999999988776
Q ss_pred ---------CCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 522 ---------EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 522 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
+|.++.++..++.+....|+ +|.+++.++++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48888888888878888887 8889999887733
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.90 E-value=6.1e-08 Score=91.78 Aligned_cols=181 Identities=9% Similarity=-0.008 Sum_probs=112.6
Q ss_pred hHHHHHHHhhHHhcCChHHHHHHHhcCCC--CC----chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 005454 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPT--RN----VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF----TF 427 (696)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~ 427 (696)
...+..+...+.+.|++++|...|+.+.. |+ ...+..+..+|.+.|++++|+..|++.++. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34445566667777888888877776652 22 235666777777778888888888777763 34322 23
Q ss_pred HHHHHHHhc------------------CCcHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhccCCHHHHHHHHHhCCC
Q 005454 428 VSVLSACLH------------------ADLFERGQNHFDSISAVHGITPSL-DHYACMINLLGRSSDVDKAVDLIKSLPH 488 (696)
Q Consensus 428 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 488 (696)
..+..++.. .|+.++|...|+.+.+. .|+. ..+..... .+.+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH--------
Confidence 333333332 34455555555555432 1221 11111000 00000000
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCChhHHHHHHHHhhhCCCc
Q 005454 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA---GPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558 (696)
Q Consensus 489 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 558 (696)
......+...+...|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00113456678899999999999999999999886 56899999999999999999999999876653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.3e-08 Score=96.08 Aligned_cols=204 Identities=7% Similarity=-0.037 Sum_probs=145.4
Q ss_pred CccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCc--hHHHHHHHhhHHhcCChHHHHHHHhcCCC--C-C---chHHH
Q 005454 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD--LLVSSALIDMYCKCGVTDDAWTVFNMMPT--R-N---VVSWN 393 (696)
Q Consensus 322 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~ 393 (696)
+...+......+...|+++.|...+..+++..+... ...+..+..+|.+.|++++|...|+.... | + ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 345566677788899999999999999998765421 66788899999999999999999998762 2 1 34677
Q ss_pred HHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHH
Q 005454 394 SMINGYAQ--------NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465 (696)
Q Consensus 394 ~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 465 (696)
.+..++.. .|++++|+..|++.++. .|+..... .+...+..+... ....+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~-------------~a~~~~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVD-------------DATQKIRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHH-------------HHHHHHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHH-------------HHHHHHHHHHHH-----HHHHHHH
Confidence 78888888 99999999999999984 45532111 111111111110 0123556
Q ss_pred HHHHHhccCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHHhcCCCCCch--
Q 005454 466 MINLLGRSSDVDKAVDLIKSLPH-KPN----SLIWSTLLSVCAMK----------GDIKHGEMAARHLFELEPINAGP-- 528 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~-- 528 (696)
+...|.+.|++++|...|+++.. .|+ ...+..+..++... |++++|...++++++..|+++.+
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 77888889999999888876422 233 34677777777755 88999999999999999998643
Q ss_pred -HHHHHHHHhhcCChhHH
Q 005454 529 -YIMLSNMYAACGRWEDV 545 (696)
Q Consensus 529 -~~~l~~~~~~~g~~~~A 545 (696)
+..+..++...|+++++
T Consensus 234 a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 234 AEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 55566666655555443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-08 Score=85.41 Aligned_cols=129 Identities=17% Similarity=0.290 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 470 (696)
.|..+...+...|++++|+.+|+++.+.+ +.+..++..+...+...|++++|..+++.+.+. .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~--------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D--------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C---------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C---------------
Confidence 45666666667777777777777766532 223445555555555666666666666555432 1
Q ss_pred hccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 471 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
+.+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.++
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 12344555666666677777777777777777777777777777777777777777777777
Q ss_pred Hhhh
Q 005454 551 SMKS 554 (696)
Q Consensus 551 ~m~~ 554 (696)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.87 E-value=4.4e-08 Score=83.61 Aligned_cols=121 Identities=18% Similarity=0.253 Sum_probs=88.4
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 436 (696)
.+..+...|...|++++|..+|+.+. +.+...|..+...+...|++++|...|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 56778899999999999999999765 3467788999999999999999999999998853 3456677778888888
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHH
Q 005454 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 483 (696)
.|++++|..+++.+.+. .+.+...+..++..+.+.|++++|.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 88888888888887753 1222333333444444444444443333
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-09 Score=94.27 Aligned_cols=140 Identities=10% Similarity=0.002 Sum_probs=94.4
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCH
Q 005454 398 GYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476 (696)
Q Consensus 398 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 476 (696)
.+...|+.++|++.+++... ..|+ ...+..+...|...|++++|++.|++..+. -+-+...|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 33445566666666666544 2333 234455566666667777777776666642 122356666777777777777
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCCCchHHHHHHHHhhcCC
Q 005454 477 DKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMA-ARHLFELEPINAGPYIMLSNMYAACGR 541 (696)
Q Consensus 477 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (696)
++|...|++. ...| +..+|..+...+...|+.++|.+. ++++++++|.++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777653 2244 466888888889999988766554 689999999999999999999888875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3.5e-08 Score=96.70 Aligned_cols=165 Identities=12% Similarity=0.082 Sum_probs=98.0
Q ss_pred hHHHHHHHhhHHhcCChHHHHHHHhcCCC-------C----CchHHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 005454 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPT-------R----NVVSWNSMINGYAQNGQDLEALALYDKLLQE------NL 420 (696)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 420 (696)
..++..+...|...|++++|...|++... + ...+|..+...|...|++++|+..|++..+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455566666666666666666654431 1 2346677777788888888888888877663 11
Q ss_pred CCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhh------CCCCC-hHHHHHHHHHHhc------cCCHHHHHHHHHhC
Q 005454 421 KPD-SFTFVSVLSACLHADLFERGQNHFDSISAVH------GITPS-LDHYACMINLLGR------SSDVDKAVDLIKSL 486 (696)
Q Consensus 421 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~~~~li~~~~~------~g~~~~A~~~~~~~ 486 (696)
.|+ ..++..+...+...|++++|..+++.+.+.. ...+. ...+..+...+.. ...+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 332 3567777778888888888888888776531 11222 2233333333333 23345555555555
Q ss_pred CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 487 PHK-PN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 487 ~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
... |+ ..++..+...+...|++++|...++++++..
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 432 33 3478889999999999999999999988753
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.6e-09 Score=114.49 Aligned_cols=169 Identities=8% Similarity=-0.055 Sum_probs=130.0
Q ss_pred HhcCChHHHHHHHhcCC-----------CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 005454 369 CKCGVTDDAWTVFNMMP-----------TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437 (696)
Q Consensus 369 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 437 (696)
...|++++|.+.|+... ..+...|..+...|.+.|++++|++.|++.++.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 66788888888887654 3456678888888888899999998888888742 23456777778888888
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 005454 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAA 515 (696)
Q Consensus 438 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 515 (696)
|++++|+..|+++.+. -+.+...|..+..+|.+.|++++ .+.|++.. ..| +...|..+..++...|++++|...+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8999999888888763 12346777888888888888888 88887643 234 5668888888888999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHhhcCC
Q 005454 516 RHLFELEPINAGPYIMLSNMYAACGR 541 (696)
Q Consensus 516 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (696)
+++++++|.+..++..++.+|...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999888888888888877665
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-07 Score=86.76 Aligned_cols=162 Identities=9% Similarity=0.001 Sum_probs=128.4
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC----cHHHHHHHHHHhHHhhCCCCChHH
Q 005454 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD----LFERGQNHFDSISAVHGITPSLDH 462 (696)
Q Consensus 387 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~ 462 (696)
.++.++..+...|...+++++|++.|++..+.| +...+..+...+.. + ++++|..+|+...+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 456677777777777888888888888888765 45666667667776 6 788999988888652 35667
Q ss_pred HHHHHHHHhc----cCCHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCchHH
Q 005454 463 YACMINLLGR----SSDVDKAVDLIKSLPHK-PN---SLIWSTLLSVCAM----KGDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 463 ~~~li~~~~~----~g~~~~A~~~~~~~~~~-p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
+..|..+|.. .+++++|.+++++.... |. ...+..|...|.. .++.++|...++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7778888876 88999999999875543 42 6788888888888 78999999999999998 66788999
Q ss_pred HHHHHHhhc-C-----ChhHHHHHHHHhhhCCC
Q 005454 531 MLSNMYAAC-G-----RWEDVASIRSSMKSKNV 557 (696)
Q Consensus 531 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 557 (696)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999864 3 89999999999887664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.9e-08 Score=96.33 Aligned_cols=172 Identities=10% Similarity=0.003 Sum_probs=131.6
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhC
Q 005454 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHG 455 (696)
Q Consensus 377 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 455 (696)
....+......+...+..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|...++++...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 333444433444556667777888889999999999988884 454 567777888888999999999999887643
Q ss_pred CCCChHHHHHH-HHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CchHH
Q 005454 456 ITPSLDHYACM-INLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN--AGPYI 530 (696)
Q Consensus 456 ~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~ 530 (696)
.|+....... ...+.+.|+.++|.+.+++.. ..| +...+..+...+...|++++|...++++++.+|.+ ..++.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 4554433222 233667777888888877642 234 56789999999999999999999999999999988 78899
Q ss_pred HHHHHHhhcCChhHHHHHHHHhh
Q 005454 531 MLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 531 ~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
.|+.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999998887653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-06 Score=93.32 Aligned_cols=125 Identities=16% Similarity=0.066 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
..|...+..+.+.++.+.|..+|++. +.. .++...|......- ...++.+.|..+|+...+.++ .+...+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 35666666666777788888888888 321 12333343222111 122358888888888877532 22345566677
Q ss_pred HHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005454 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520 (696)
Q Consensus 469 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (696)
...+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++..+
T Consensus 363 ~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777888888888888873 2456677777666667777777776666553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=89.68 Aligned_cols=122 Identities=11% Similarity=0.001 Sum_probs=100.2
Q ss_pred HHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 005454 430 VLSACLHADLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKG 506 (696)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g 506 (696)
|...+...|++++|+..++.... ..|+ ...+-.+..+|.+.|++++|.+.|++.. ..| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34455677889999999887753 3444 4456678999999999999999998753 345 5679999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHH-HHHhhh
Q 005454 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASI-RSSMKS 554 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 554 (696)
++++|...++++++++|.++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987776 466654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.78 E-value=3.5e-07 Score=88.92 Aligned_cols=180 Identities=11% Similarity=0.041 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-----CCchHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005454 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-----RNVVSWNSMINGYAQNGQDLEALALYDKLL 416 (696)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 416 (696)
+...++..+..+ .++......+...|...|++++|++++..... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555444 33444455777888888888888888887632 244567777888899999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHHHh--c--CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC
Q 005454 417 QENLKP-----DSFTFVSVLSACL--H--ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487 (696)
Q Consensus 417 ~~g~~p-----~~~t~~~ll~a~~--~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 487 (696)
+ ..| +..+...+..++. . .+++.+|..+|+++... .|+......+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7 467 3566666666632 2 34889999999998653 3543333344447888999999999887543
Q ss_pred C-----------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchH
Q 005454 488 H-----------KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 488 ~-----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
. .| |..+...++......|+ .|.++++++.+..|+++...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 2 14 34456566655666676 88999999999999987653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=8.5e-08 Score=104.85 Aligned_cols=159 Identities=10% Similarity=0.031 Sum_probs=124.6
Q ss_pred cCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHH
Q 005454 371 CGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNH 446 (696)
Q Consensus 371 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 446 (696)
.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+. .|+ ..++..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998763 35678999999999999999999999999984 454 67888889999999999999999
Q ss_pred HHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 005454 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMK---GDIKHGEMAARHLFEL 521 (696)
Q Consensus 447 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 521 (696)
+++..+. -+.+...+..+..+|.+.|++++|.+.+++.. ..| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999874 23457889999999999999999999998743 234 567889999999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 005454 522 EPINAGPYIMLS 533 (696)
Q Consensus 522 ~p~~~~~~~~l~ 533 (696)
+|.+...|..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999999988776
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-07 Score=80.40 Aligned_cols=94 Identities=12% Similarity=0.090 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
..+......|.+.|++++|++.|++.. ..| +..+|..+..++...|++++|...++++++++|.++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 445556666666677777766666532 233 455677777777777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHhhh
Q 005454 539 CGRWEDVASIRSSMKS 554 (696)
Q Consensus 539 ~g~~~~A~~~~~~m~~ 554 (696)
.|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777777776654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.7e-07 Score=100.80 Aligned_cols=190 Identities=11% Similarity=-0.024 Sum_probs=145.5
Q ss_pred HhhcCchhHHHHHHHHH--------HhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHc
Q 005454 334 AKLASLYHGQVVHGKAV--------VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQN 402 (696)
Q Consensus 334 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 402 (696)
...|++++|.+.+..+. +.. +.+...+..+...|.+.|++++|...|++.. ..+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888887 332 3466778888889999999999999998776 35677899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHH
Q 005454 403 GQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481 (696)
Q Consensus 403 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 481 (696)
|++++|++.|++.++. .|+ ...+..+..++...|++++ ++.|+++.+. -+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999884 554 5778888889999999999 9999998863 23346788999999999999999999
Q ss_pred HHHhCC-CCCCH-HHHHHHHHHHHhcCC-----hHHHHHHHHHHHhcCCCCCchH
Q 005454 482 LIKSLP-HKPNS-LIWSTLLSVCAMKGD-----IKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 482 ~~~~~~-~~p~~-~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
.+++.. ..|+. ..|..+..++...++ .+...++.+.+.++.+.++..+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 999865 46764 477777777766554 3445555555555655555543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-07 Score=85.36 Aligned_cols=75 Identities=11% Similarity=0.036 Sum_probs=59.7
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 479 AVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN--AGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 479 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
|.+.+++. ...| +...+..+...+...|++++|...++++++.+|.. +.++..++.+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44444442 2234 46788888889999999999999999999999865 5589999999999999999999887664
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.3e-07 Score=101.45 Aligned_cols=147 Identities=12% Similarity=-0.041 Sum_probs=94.0
Q ss_pred hcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHH
Q 005454 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALY 412 (696)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 412 (696)
.|++++|...++++.+.... +...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36677788888777765433 56777778888888888888888887654 235567777888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc---CCHHHHHHHHHhC
Q 005454 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS---SDVDKAVDLIKSL 486 (696)
Q Consensus 413 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 486 (696)
++..+.. +.+...+..+..++...|++++|.+.|++..+. -+.+...+..+...+... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8887742 233567777777888888888888888887753 123456777777888777 8888888877664
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5e-08 Score=85.38 Aligned_cols=95 Identities=9% Similarity=-0.030 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|...++++++++|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4566777888888999999998887743 234 67789999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhhh
Q 005454 538 ACGRWEDVASIRSSMKS 554 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~ 554 (696)
..|++++|.+.+++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998866
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=9.3e-08 Score=83.63 Aligned_cols=101 Identities=10% Similarity=-0.013 Sum_probs=87.1
Q ss_pred CCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 455 GITPS-LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 455 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
.+.|+ ...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|...++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34454 4567777888888899999988887753 244 67799999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHhhhC
Q 005454 532 LSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 532 l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
++.+|...|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998763
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-06 Score=84.13 Aligned_cols=149 Identities=13% Similarity=0.162 Sum_probs=75.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHH--HHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCC-----
Q 005454 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE--RGQNHFDSISAVHGITPSLDHYACMINLLGRSSD----- 475 (696)
Q Consensus 403 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----- 475 (696)
+++++++++++++.+.. +-|..+|..-...+.+.|.++ +++++++.+.+. -.-+...|+.-..++.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 44555555555555532 223344444444444444444 555555555542 12233444444444444444
Q ss_pred -HHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcC---CCCCchHHHHHHHHhhcCChhHHHHH
Q 005454 476 -VDKAVDLIKSLP-HK-PNSLIWSTLLSVCAMKGDI-KHGEMAARHLFELE---PINAGPYIMLSNMYAACGRWEDVASI 548 (696)
Q Consensus 476 -~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 548 (696)
+++++++++++. .. -|...|+.+...+.+.|+. +.....++++++++ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 555555554422 12 2455666665555555542 33444555555554 55556666666666666666666666
Q ss_pred HHHhhh
Q 005454 549 RSSMKS 554 (696)
Q Consensus 549 ~~~m~~ 554 (696)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.4e-07 Score=86.48 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=93.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc
Q 005454 394 SMINGYAQNGQDLEALALYDKLLQENLKP-DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472 (696)
Q Consensus 394 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 472 (696)
.+...|.+.|++++|+..|++.++. .| +...+..+..++...|++++|...|+++.+. -+.+...+..+...|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3788888999999999999998884 45 4577888888888999999999999988763 23346778888888766
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 473 SSD--VDKAVDLIKSLPHKPNS--LIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 473 ~g~--~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
.|. .+++...++... .|+. ..|..+..++...|++++|...+++++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 654 345566666654 3333 34455566677789999999999999999996
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.9e-06 Score=81.09 Aligned_cols=226 Identities=9% Similarity=0.032 Sum_probs=159.2
Q ss_pred hhHHHHHHHHhccCCCCCCccc-hHHHHHHHHhhc--CchhHHHHHHHHHHhCCCCchHHHHHHHhhH----Hhc---CC
Q 005454 304 EEDALILFNEMLSEDVRPDKFS-ISSVVSSCAKLA--SLYHGQVVHGKAVVLGVDDDLLVSSALIDMY----CKC---GV 373 (696)
Q Consensus 304 ~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~---g~ 373 (696)
.++|++++..++. +.|+..| ++.--..+...+ +++++...+..++...+. +..+++.-...+ .+. ++
T Consensus 49 s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3466666666664 3444333 333334444455 666666666666665544 344444333333 333 67
Q ss_pred hHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCc------HHH
Q 005454 374 TDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDL--EALALYDKLLQENLKPDSFTFVSVLSACLHADL------FER 442 (696)
Q Consensus 374 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~~ 442 (696)
++++..+++.+. .+|..+|+.-.-.+.+.|.++ ++++.++++++.. +-|...|..-.....+.+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 888888888776 467778888888888888888 9999999999864 4456677666666666665 899
Q ss_pred HHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHH-HHHHHHhCCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005454 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK-AVDLIKSLPH-----KPNSLIWSTLLSVCAMKGDIKHGEMAAR 516 (696)
Q Consensus 443 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 516 (696)
++++++.+... -+-|...|+.+..++.+.|+..+ +.++.+++.. ..+...+..++..+.+.|+.++|.++++
T Consensus 205 El~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999988863 34567888888888988888555 5556666432 3477899999999999999999999999
Q ss_pred HHHh-cCCCCCchHHHHHHH
Q 005454 517 HLFE-LEPINAGPYIMLSNM 535 (696)
Q Consensus 517 ~~~~-~~p~~~~~~~~l~~~ 535 (696)
.+.+ .+|.....|...+..
T Consensus 283 ~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHHT
T ss_pred HHHhccChHHHHHHHHHHhh
Confidence 9997 899888777766544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.63 E-value=2e-07 Score=78.90 Aligned_cols=115 Identities=9% Similarity=0.037 Sum_probs=83.9
Q ss_pred CCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHH
Q 005454 420 LKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWS 496 (696)
Q Consensus 420 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~ 496 (696)
+.|+. ..+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.+++.. ..| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 34555666666777777777777766652 23345666777777777777777777776532 233 566899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 005454 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536 (696)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 536 (696)
.+..++...|++++|...++++++++|+++.++..|.+++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999888887654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.3e-07 Score=88.84 Aligned_cols=221 Identities=12% Similarity=0.010 Sum_probs=153.6
Q ss_pred hcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHH
Q 005454 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379 (696)
Q Consensus 300 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 379 (696)
..|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577889999998876531 111 1 01135666666665543 456778888888888
Q ss_pred HHhcCCC-----CC----chHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhcCCcHHHHHH
Q 005454 380 VFNMMPT-----RN----VVSWNSMINGYAQNGQDLEALALYDKLLQEN---LKPD--SFTFVSVLSACLHADLFERGQN 445 (696)
Q Consensus 380 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 445 (696)
.|.+... .+ ..+|+.+...|...|++++|+..|++.++.- -.|. ..++..+...+.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7775542 12 3478888899999999999999999876521 1222 3567778888888 99999999
Q ss_pred HHHHhHHhhCCCCC----hHHHHHHHHHHhccCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHhcCChHHHHH
Q 005454 446 HFDSISAVHGITPS----LDHYACMINLLGRSSDVDKAVDLIKSLPH----KPN----SLIWSTLLSVCAMKGDIKHGEM 513 (696)
Q Consensus 446 ~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~ll~~~~~~g~~~~a~~ 513 (696)
.|++....+.-..+ ...+..+...|.+.|++++|++.+++... .++ ...+..+...+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988764211111 46788899999999999999999976422 122 2266667777788899999999
Q ss_pred HHHHHHhcCCCCCch-----HHHHHHHHhhcCChhHHHHH
Q 005454 514 AARHLFELEPINAGP-----YIMLSNMYAACGRWEDVASI 548 (696)
Q Consensus 514 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 548 (696)
.+++.+ ++|..... ...++.+| ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99876543 33455555 56777666553
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-06 Score=85.14 Aligned_cols=161 Identities=8% Similarity=-0.017 Sum_probs=120.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC----hHHHH
Q 005454 394 SMINGYAQNGQDLEALALYDKLLQEN-LKPDSF----TFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LDHYA 464 (696)
Q Consensus 394 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~ 464 (696)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..|+.+.....-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888899999999999987742 122321 2334556677788999999999988763222233 23688
Q ss_pred HHHHHHhccCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------CchH
Q 005454 465 CMINLLGRSSDVDKAVDLIKSLP-------H-KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN------AGPY 529 (696)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~~~-------~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 529 (696)
.+...|...|++++|.+.++++. . .+. ..++..+...|...|++++|...+++++++.+.. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999988887643 2 122 2378899999999999999999999999876433 4579
Q ss_pred HHHHHHHhhcCC-hhHHHHHHHHhhh
Q 005454 530 IMLSNMYAACGR-WEDVASIRSSMKS 554 (696)
Q Consensus 530 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 554 (696)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999887753
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=6.2e-07 Score=83.77 Aligned_cols=123 Identities=8% Similarity=-0.014 Sum_probs=91.6
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcC
Q 005454 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-H-KPNSLIWSTLLSVCAMKG 506 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g 506 (696)
.+...+...|++++|...|+.. +.|+...+..+...|.+.|++++|.+.+++.. . +.+...|..+..++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 3444455566666666666544 23455666666666666677777766665532 1 235668888888899999
Q ss_pred ChHHHHHHHHHHHhcCCCCC----------------chHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 507 DIKHGEMAARHLFELEPINA----------------GPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
++++|...+++++++.|.+. .++..++.+|...|++++|.+.+++..+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999888877 889999999999999999999999987744
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.58 E-value=5.1e-05 Score=80.50 Aligned_cols=200 Identities=12% Similarity=0.048 Sum_probs=127.0
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH-HHHHHhc
Q 005454 208 DKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA-GRLFHVI 283 (696)
Q Consensus 208 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A-~~~~~~~ 283 (696)
+.+..+|+++.. .+...|-..+.-+.+.|++++|..+|++.... |....+.. .|+.....++. ..+.+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHHHHHHHHHH
Confidence 345667777654 34567888888888999999999999999887 55443322 23322111111 1122211
Q ss_pred c------------CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHh-hcCchhHHHHHHHHH
Q 005454 284 K------------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK-LASLYHGQVVHGKAV 350 (696)
Q Consensus 284 ~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~ 350 (696)
. ......|...+....+.+..+.|..+|.+. .. ...+...|......-.. .++.+.|+.+++.++
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 011245777777777788899999999988 32 11222222221111112 236888999999888
Q ss_pred HhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005454 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 351 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
+.... ++..+...++...+.|+.+.|..+|+.+. .....|...+.--...|+.+.+..+++++.+
T Consensus 348 ~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 86532 45556667888888899999999998884 3566777777776777888888887777664
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=5e-07 Score=78.33 Aligned_cols=95 Identities=9% Similarity=-0.057 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|...++++++++|.++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3455666777888888888888887643 234 67789999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhhh
Q 005454 538 ACGRWEDVASIRSSMKS 554 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~ 554 (696)
..|++++|.+.+++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998866
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-06 Score=85.64 Aligned_cols=153 Identities=9% Similarity=-0.012 Sum_probs=72.1
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC--CCchHHH-HHHHHHHHcCCh
Q 005454 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSWN-SMINGYAQNGQD 405 (696)
Q Consensus 329 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~-~li~~~~~~g~~ 405 (696)
+...+...|+++.|...++.+.+..+. +...+..+...|.+.|++++|...|+.+.. |+..... .....+...++.
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhccc
Confidence 333344444444444444444444332 344555555666666666666666665542 3222111 112224445555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHH
Q 005454 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483 (696)
Q Consensus 406 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 483 (696)
++|+..|++..... +.+...+..+..++...|++++|...|.++.+...-..+...+..++.+|...|+.++|...+
T Consensus 202 ~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 202 TPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp CHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 55555555555532 223345555555555556666666555555543111111334444444444444444444444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-06 Score=86.37 Aligned_cols=163 Identities=9% Similarity=-0.024 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhC--CCCC--hH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-----FTFVSVLSACLHADLFERGQNHFDSISAVHG--ITPS--LD 461 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~--~~ 461 (696)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++....... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4555677788889999999999888774322111 1233445566778899999999988764211 1111 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--C----C
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSLP----HKPN-----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI--N----A 526 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~----~ 526 (696)
.|+.+...|...|++++|.+.+++.. ..|+ ..++..+...|...|++++|...+++++++.+. + .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888999999999999998887642 1222 258889999999999999999999999887532 1 4
Q ss_pred chHHHHHHHHhhcCChhHH-HHHHHHhh
Q 005454 527 GPYIMLSNMYAACGRWEDV-ASIRSSMK 553 (696)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 553 (696)
.+|..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5688999999999999999 77677654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.5e-06 Score=82.10 Aligned_cols=183 Identities=10% Similarity=-0.101 Sum_probs=131.3
Q ss_pred cchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCc--hHHHHHHHhhHHhcCChHHHHHHHhcCCC--CC-ch---HHHHH
Q 005454 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD--LLVSSALIDMYCKCGVTDDAWTVFNMMPT--RN-VV---SWNSM 395 (696)
Q Consensus 324 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~---~~~~l 395 (696)
..+......+...|+++.|...+..+++..+... ...+..+..+|.+.|++++|...|+...+ |+ .. ++..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3455566778899999999999999998765422 45777889999999999999999998752 32 22 45555
Q ss_pred HHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCCcHHHHHHHHHHhHHhhCC
Q 005454 396 INGYAQ------------------NGQDLEALALYDKLLQENLKPDSFT-FVSVLSACLHADLFERGQNHFDSISAVHGI 456 (696)
Q Consensus 396 i~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 456 (696)
..++.. .|+.++|+..|+++++ ..|+... ...... ...+...+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----------l~~~~~~~------ 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----------LVFLKDRL------ 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----------HHHHHHHH------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----------HHHHHHHH------
Confidence 666654 5789999999999998 4566532 211110 00111111
Q ss_pred CCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 457 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
......+...|.+.|++++|...|+++.. .|+ ...+..+..++...|+.++|...++++....|.+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 11223567888999999999999887532 343 246888899999999999999999999998887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.2e-06 Score=80.06 Aligned_cols=173 Identities=9% Similarity=-0.075 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-CCchHHHHHHHHHHHcC----ChHHHHHHHHHH
Q 005454 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQNG----QDLEALALYDKL 415 (696)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~l~~~m 415 (696)
+|.+.+....+.| ++..+..|..+|...+++++|...|++..+ .++.++..|...|.. + +.++|+++|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3455556665553 566777777788888888888888876653 456677777777776 6 788899999888
Q ss_pred HHCCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHhHHhhCCCCC---hHHHHHHHHHHhc----cCCHHHHHHHHH
Q 005454 416 LQENLKPDSFTFVSVLSACLH----ADLFERGQNHFDSISAVHGITPS---LDHYACMINLLGR----SSDVDKAVDLIK 484 (696)
Q Consensus 416 ~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~ 484 (696)
.+.| +...+..|...+.. .+++++|..+|++..+ ..|. ...+..|..+|.. .+++++|.++|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7755 55666777777776 7889999999988764 2342 6777788888877 788999999998
Q ss_pred hCCCC-CCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhcCC
Q 005454 485 SLPHK-PNSLIWSTLLSVCAMK-G-----DIKHGEMAARHLFELEP 523 (696)
Q Consensus 485 ~~~~~-p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 523 (696)
+.... ++...+..|...|... | |.++|...++++.+.+.
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 75333 4556777777777643 3 89999999999988764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-07 Score=92.14 Aligned_cols=191 Identities=10% Similarity=-0.021 Sum_probs=123.7
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLS 432 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 432 (696)
+...+..+...|.+.|++++|...|+... ..+...|..+..+|...|++++|+..+++.++. .|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34455666677777777777777777654 335667777888888888888888888888774 443 566777777
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITPSL-DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 511 (696)
++...|++++|...|+...+.. |+. ..+...+....+.++...... .......++..+...+ ..+ ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 8888888888888887776531 211 111111222221111111111 2222333344443333 222 36899999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhc-CChhHHHHHHHHhhhC
Q 005454 512 EMAARHLFELEPINAGPYIMLSNMYAAC-GRWEDVASIRSSMKSK 555 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 555 (696)
.+.++++++++|.+......+...+.+. +++++|.++|.+..+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998887777888778777 7899999999988653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.2e-06 Score=78.82 Aligned_cols=145 Identities=9% Similarity=-0.040 Sum_probs=99.7
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcH
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 440 (696)
+..+...+...|++++|...|++..+++...|..+...|...|++++|++.|++.++.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34556677788888888888888877777788888888888888888888888877743 33456677777777777888
Q ss_pred HHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005454 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLF 519 (696)
Q Consensus 441 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (696)
++|...|+.+.+...-.+... +...| +...|+ ..+|..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 888877777765211111000 00000 012232 3577788888888999999999999999
Q ss_pred hcCCCC
Q 005454 520 ELEPIN 525 (696)
Q Consensus 520 ~~~p~~ 525 (696)
++.|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 988876
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.5e-06 Score=76.99 Aligned_cols=154 Identities=12% Similarity=0.075 Sum_probs=96.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHH--H
Q 005454 259 TVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS--C 333 (696)
Q Consensus 259 t~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~ 333 (696)
.+......+...|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.. +..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHH
Confidence 344555667888888888888888763 46677888889999999999999999988764 33332 2222211 1
Q ss_pred HhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC--CC---chHHHHHHHHHHHcCChHHH
Q 005454 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RN---VVSWNSMINGYAQNGQDLEA 408 (696)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A 408 (696)
...+....+...++.+++..+. +...+..+...|...|++++|...|+++.+ |+ ...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1222333456666666665443 455566666666666666666666665442 21 33566666666666666666
Q ss_pred HHHHHHHH
Q 005454 409 LALYDKLL 416 (696)
Q Consensus 409 ~~l~~~m~ 416 (696)
...|++.+
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-06 Score=81.32 Aligned_cols=135 Identities=17% Similarity=0.097 Sum_probs=85.3
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLH 436 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 436 (696)
.+.+...|.+.|++++|...|++.. +.+...|..+...|...|++++|+..|++.++. .|+ ..++..+..++..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3446777778888888888877654 345667788888888888888888888888773 454 4566666666654
Q ss_pred CCc--HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCHHHHHHHHH
Q 005454 437 ADL--FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS-LPHKPNSLIWSTLLS 500 (696)
Q Consensus 437 ~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~ll~ 500 (696)
.|. ...+...+.... ...|....+..+...+...|++++|...|++ +...|+......+..
T Consensus 135 ~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 443 334444444432 2223223344455566677888888888876 445677665555543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.50 E-value=9.5e-07 Score=78.54 Aligned_cols=125 Identities=6% Similarity=-0.019 Sum_probs=84.4
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHh
Q 005454 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HK-PNSLIWSTLLSVCAM 504 (696)
Q Consensus 427 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~ 504 (696)
+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++.. .. .+...|..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 333444445555555555555555442 12234555556666666666666666665432 12 356678888888999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHH--HHhhcCChhHHHHHHHHhh
Q 005454 505 KGDIKHGEMAARHLFELEPINAGPYIMLSN--MYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~ 553 (696)
.|++++|...++++++++|.++..+..+.. .+...|++++|.+.++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999998888754444 4888899999999988764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-06 Score=73.62 Aligned_cols=113 Identities=16% Similarity=0.191 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 005454 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCA 503 (696)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~ 503 (696)
++..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|...++++.. +.+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 3444444455555555555555555432 122344555555566666666666665554321 235667788888888
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
..|++++|...++++++..|.++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8999999999999999999988888888888876654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.6e-07 Score=75.23 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
...+..+...+.+.|++++|.+.|++.. ..| +...|..+..++...|++++|...++++++++|.++.+|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3456667777788888888888887642 233 56788999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhhh
Q 005454 538 ACGRWEDVASIRSSMKS 554 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~ 554 (696)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 99999999999988866
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=74.61 Aligned_cols=114 Identities=6% Similarity=-0.037 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHH
Q 005454 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-H-KPNSLIWSTLLSVCA 503 (696)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~ 503 (696)
.+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++.. . +.+...|..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3333444444444444444444444321 11233444445555555555555555554421 1 234567788888888
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (696)
..|++++|...++++++++|.+...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 89999999999999999999988889899888887664
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-06 Score=87.73 Aligned_cols=197 Identities=9% Similarity=-0.056 Sum_probs=150.1
Q ss_pred hhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHH
Q 005454 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414 (696)
Q Consensus 335 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 414 (696)
..|++++|..+++++.+.... . .+...++++.|...|.. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356778888888888764321 1 11115788888888765 46778899999999999998
Q ss_pred HHHCCC---CCC--HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCC--C--ChHHHHHHHHHHhccCCHHHHHHHHHh
Q 005454 415 LLQENL---KPD--SFTFVSVLSACLHADLFERGQNHFDSISAVHGIT--P--SLDHYACMINLLGRSSDVDKAVDLIKS 485 (696)
Q Consensus 415 m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~~~~li~~~~~~g~~~~A~~~~~~ 485 (696)
..+... .+. ..+|..+...+...|++++|+..|++..+.+.-. | ....+..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 766311 111 3478888889999999999999999886542111 1 14678889999988 999999999876
Q ss_pred CCC----CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc------hHHHHHHHHhhcCChhHHHHHHHH
Q 005454 486 LPH----KPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG------PYIMLSNMYAACGRWEDVASIRSS 551 (696)
Q Consensus 486 ~~~----~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~ 551 (696)
... ..+ ..++..+...+...|++++|...+++++++.|.+.. .+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 421 111 357888999999999999999999999998765542 677788889999999999999998
Q ss_pred hh
Q 005454 552 MK 553 (696)
Q Consensus 552 m~ 553 (696)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 86
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-06 Score=79.27 Aligned_cols=120 Identities=8% Similarity=0.062 Sum_probs=85.6
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-C-CCHHHHHHHHHH-HHhcCCh--H
Q 005454 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-K-PNSLIWSTLLSV-CAMKGDI--K 509 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~ll~~-~~~~g~~--~ 509 (696)
...|++++|...++...+. -+.+...+..+...|...|++++|...+++... . .+...|..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456666666666666542 123456666677777777777777777765422 2 355677777777 6788888 9
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 510 HGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 510 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
+|...++++++.+|.++.++..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999999988899999999999999999999998887644
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-06 Score=74.11 Aligned_cols=116 Identities=9% Similarity=-0.007 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 005454 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCA 503 (696)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~ 503 (696)
.+..+...+...|++++|...|+.+... .+.+...+..+...+...|++++|.+.+++.. ..| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4444445555556666666666555542 12234555566666666666666666665432 123 4667888888899
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChh
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 543 (696)
..|++++|...++++++.+|.++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998888753
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.9e-07 Score=86.70 Aligned_cols=137 Identities=9% Similarity=-0.083 Sum_probs=99.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC--hHHHHHHHHHH
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS--LDHYACMINLL 470 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 470 (696)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. ..|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHH
Confidence 44566777888888888888887763 465545555555677888899998888755431 1121 23667778888
Q ss_pred hccCCHHHHHHHHHhCCCC---CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 471 GRSSDVDKAVDLIKSLPHK---PN--SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 471 ~~~g~~~~A~~~~~~~~~~---p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
.+.|++++|+..|++.... |. ...+..+..++...|+.++|...|+++++.+|. +.++..|.+
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 8999999999998876322 43 336777788889999999999999999999997 666655543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-06 Score=87.17 Aligned_cols=144 Identities=14% Similarity=0.023 Sum_probs=103.7
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 005454 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 467 (696)
+...|..+...|.+.|++++|+..|++.++. .|+...+ ..+.+.+.- +.....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~---------~~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ---------ALRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH---------HHHHHHHHHHH
Confidence 3446677777777777777777777777663 3332100 001111000 00135677778
Q ss_pred HHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHH
Q 005454 468 NLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 545 (696)
.+|.+.|++++|++.+++.. ..| +...|..+..++...|++++|...++++++++|.++.++..++.++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887642 233 5678999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHhh
Q 005454 546 -ASIRSSMK 553 (696)
Q Consensus 546 -~~~~~~m~ 553 (696)
...++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 44666664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.39 E-value=4e-06 Score=80.40 Aligned_cols=181 Identities=7% Similarity=-0.034 Sum_probs=136.3
Q ss_pred hcCChHHHHHHHhcCC---CCCchHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCH---------------
Q 005454 370 KCGVTDDAWTVFNMMP---TRNVVSWNSM-------INGYAQNGQDLEALALYDKLLQENLKPDS--------------- 424 (696)
Q Consensus 370 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------- 424 (696)
..++...|.+.|.++. +.....|+.+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4678888888888766 2345578877 4666666666677766666555 33332
Q ss_pred -------HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCH----H
Q 005454 425 -------FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS----L 493 (696)
Q Consensus 425 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 493 (696)
.....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223455667889999999999988864 2354436666777899999999999999876554533 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC-CCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELE--PI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
++..+..++...|++++|+..++++..-. |. .+.....++.++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78888999999999999999999998543 43 4457889999999999999999999999773
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-06 Score=91.70 Aligned_cols=117 Identities=7% Similarity=-0.017 Sum_probs=88.2
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKH 510 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 510 (696)
.+...|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|.+.+++. ...| +..+|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 345667777777777777653 1223667777777788888888887777663 2234 56688999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHH--HhhcCChhHHHHHHHH
Q 005454 511 GEMAARHLFELEPINAGPYIMLSNM--YAACGRWEDVASIRSS 551 (696)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 551 (696)
|...++++++++|.++.++..++.+ +.+.|++++|.+.+++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999888 8899999999999874
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.2e-06 Score=76.02 Aligned_cols=61 Identities=7% Similarity=-0.014 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CC----chHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPI--NA----GPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
++..+...+...|++++|...+++++++.+. ++ ..+..++.+|...|++++|.+.+++..+
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556666667777777777777776654321 11 2356778888888888888887776644
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.32 E-value=4.2e-05 Score=75.31 Aligned_cols=158 Identities=9% Similarity=-0.030 Sum_probs=118.4
Q ss_pred HHhhHHhcCChHHHHHHHhcCCCC---Cc-----h-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 005454 364 LIDMYCKCGVTDDAWTVFNMMPTR---NV-----V-SWNSMINGYAQNGQDLEALALYDKLLQENLK-PD----SFTFVS 429 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~~~---~~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ 429 (696)
.+..+...|++++|...++..... +. . .+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788899999999999875431 11 1 2334666677788999999999999884322 22 236888
Q ss_pred HHHHHhcCCcHHHHHHHHHHhHHhh----CCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCC-------CCCC-HHHHH
Q 005454 430 VLSACLHADLFERGQNHFDSISAVH----GITPS-LDHYACMINLLGRSSDVDKAVDLIKSLP-------HKPN-SLIWS 496 (696)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 496 (696)
+...+...|++++|..+|+.+.+.. +..+. ..+|..+...|.+.|++++|.+.+++.. ..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999987522 11122 3478889999999999999999887532 1223 56888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHhc
Q 005454 497 TLLSVCAMKGD-IKHGEMAARHLFEL 521 (696)
Q Consensus 497 ~ll~~~~~~g~-~~~a~~~~~~~~~~ 521 (696)
.+..++...|+ +++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999994 69999999998764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.4e-06 Score=69.86 Aligned_cols=98 Identities=9% Similarity=0.005 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP-H-KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI--NAGPYIMLSNM 535 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 535 (696)
...+..+...+.+.|++++|...+++.. . +.+..+|..+...+...|++++|...++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3455566677777777777777776532 1 235667888888889999999999999999999998 88899999999
Q ss_pred Hhhc-CChhHHHHHHHHhhhCCC
Q 005454 536 YAAC-GRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 536 ~~~~-g~~~~A~~~~~~m~~~~~ 557 (696)
|... |++++|.+.+++..+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999988876543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-06 Score=72.95 Aligned_cols=95 Identities=11% Similarity=-0.022 Sum_probs=80.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 539 (696)
.+..+...+.+.|++++|...+++.. ..| +...|..+..++...|++++|+..++++++++|.++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34556777888899999988887753 244 6778999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhhCC
Q 005454 540 GRWEDVASIRSSMKSKN 556 (696)
Q Consensus 540 g~~~~A~~~~~~m~~~~ 556 (696)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=3.8e-06 Score=71.92 Aligned_cols=98 Identities=11% Similarity=0.041 Sum_probs=81.4
Q ss_pred CChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 005454 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 458 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
.+...+..+...+...|++++|...|++.. ..| +...|..+...+...|+++.|...++++++++|.++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 345667777777788888888887776632 233 567888899999999999999999999999999999999999999
Q ss_pred HhhcCChhHHHHHHHHhhhC
Q 005454 536 YAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 536 ~~~~g~~~~A~~~~~~m~~~ 555 (696)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.9e-06 Score=75.68 Aligned_cols=129 Identities=10% Similarity=0.080 Sum_probs=94.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHH-HhccCCH--
Q 005454 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL-LGRSSDV-- 476 (696)
Q Consensus 400 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~-- 476 (696)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+.+.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34577788888888877743 3355677777788888888888888888877632 2345677777777 7788887
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 477 DKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 477 ~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
++|...+++.. ..| +...|..+...+...|+++.|...++++++++|.++.....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 88888887643 234 46688889999999999999999999999999988765443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.8e-06 Score=75.40 Aligned_cols=105 Identities=9% Similarity=-0.038 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 005454 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVC 502 (696)
Q Consensus 425 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~ 502 (696)
..+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|.+.+++.. ..| +...|..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44555666667777777777777776652 22345666777777777777777777776642 233 456788888899
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 503 AMKGDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
...|++++|...++++++++|.++.....
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 99999999999999999999988766443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.8e-06 Score=75.61 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
...+..+...+.+.|++++|++.|++.. ..| +...|..+..++...|++++|...++++++++|.++.+|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445555556666666666666665432 123 45566667777777777777777777777777777777777777777
Q ss_pred hcCChhHHHHHHHHhhh
Q 005454 538 ACGRWEDVASIRSSMKS 554 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~ 554 (696)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 77777777777766654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.25 E-value=5.1e-06 Score=72.49 Aligned_cols=105 Identities=8% Similarity=-0.090 Sum_probs=83.6
Q ss_pred CCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHH
Q 005454 420 LKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWS 496 (696)
Q Consensus 420 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~ 496 (696)
+.|+. ..+..+...+.+.|++++|...|+.+... -+.+...|..+..+|.+.|++++|.+.|++.. ..| +...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 34543 46667777888899999999999988763 23356788888899999999999999887742 234 456888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 497 TLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
.+..++...|++++|...+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999998653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=5e-06 Score=76.61 Aligned_cols=169 Identities=10% Similarity=-0.012 Sum_probs=101.9
Q ss_pred hHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHH
Q 005454 367 MYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443 (696)
Q Consensus 367 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 443 (696)
.....|+++.|.+.|+.... .....|..+...+...|++++|+..|++.++. .|+...+... ....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~- 81 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD- 81 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH-
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH-
Confidence 34444555555555543322 13446677777788888888888888888773 3322111000 0000
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005454 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HK-PNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521 (696)
Q Consensus 444 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (696)
-.. ......+..+..+|.+.|++++|...+++.. .. .+...|..+..++...|+++.|...+++++++
T Consensus 82 ------~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 82 ------KKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp ------HHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 000 0013556667777888888888888776642 23 35678889999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCChhHHH-HHHHHhhhCC
Q 005454 522 EPINAGPYIMLSNMYAACGRWEDVA-SIRSSMKSKN 556 (696)
Q Consensus 522 ~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~ 556 (696)
+|.++.++..++.++...|+.+++. ..++.|-..+
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999888877 5555554433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.6e-06 Score=71.18 Aligned_cols=94 Identities=11% Similarity=-0.045 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc-------hHHH
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG-------PYIM 531 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 531 (696)
..+..+...+.+.|++++|++.|++.. ..| +..+|..+..+|...|++++|...++++++++|.++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 455667888888888888888887642 244 5678999999999999999999999999999987764 5777
Q ss_pred HHHHHhhcCChhHHHHHHHHhhh
Q 005454 532 LSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 532 l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
++.+|...|++++|++.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999988754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=6.7e-06 Score=67.86 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
..+..++..+...|++++|.+.+++.. ..| +...|..+...+...|++++|...++++++.+|.++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344555556666666666666665532 122 455666666777777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHhhh
Q 005454 539 CGRWEDVASIRSSMKS 554 (696)
Q Consensus 539 ~g~~~~A~~~~~~m~~ 554 (696)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 7777777777776654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.24 E-value=6.9e-06 Score=72.83 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 492 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
..+|..+..++...|+++.|...++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 357888899999999999999999999999999999999999999999999999999998866
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=9.8e-06 Score=66.82 Aligned_cols=109 Identities=12% Similarity=-0.003 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 005454 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCA 503 (696)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~ 503 (696)
.+..+...+...|++++|...|+..... .+.+...+..+...+.+.|++++|...+++.. ..| +...|..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3344444445555555555555555432 12234455555555666666666666555431 123 4567778888888
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 536 (696)
..|++++|...++++++.+|.++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 889999999999999999888887777766553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=6.4e-05 Score=74.55 Aligned_cols=209 Identities=10% Similarity=0.013 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHhhHHhcC-ChHHHHHHHhcCC---CCCchHHHHHHHHHHHc-C-ChHHHHHHHHHH
Q 005454 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCG-VTDDAWTVFNMMP---TRNVVSWNSMINGYAQN-G-QDLEALALYDKL 415 (696)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m 415 (696)
|..+...++...+. +..+++.--..+...| .+++++..++.+. .++..+|+.-...+... + ++++++++++++
T Consensus 73 AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 73 ALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 33334444333322 2333333333333344 3555555555443 23444555554444444 4 556666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHhcCCcHH--------HHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCC-------HHHHH
Q 005454 416 LQENLKPDSFTFVSVLSACLHADLFE--------RGQNHFDSISAVHGITPSLDHYACMINLLGRSSD-------VDKAV 480 (696)
Q Consensus 416 ~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~ 480 (696)
++.. +-|..+|..-...+.+.|.++ +++++++++.+. -.-|...|+....++.+.++ +++++
T Consensus 152 L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 152 LLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp TSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 5532 223344443333333333333 666666666552 23345556666666655554 56666
Q ss_pred HHHHhCC-CC-CCHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHhcC------CCCCchHHHH
Q 005454 481 DLIKSLP-HK-PNSLIWSTLLSVCAMKGDI--------------------KHGEMAARHLFELE------PINAGPYIML 532 (696)
Q Consensus 481 ~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~l 532 (696)
+++++.. .. -|...|+.+-..+.+.|+. .........+.... +.++.+...|
T Consensus 229 e~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 308 (349)
T 3q7a_A 229 IYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYL 308 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHH
Confidence 6665432 23 3566776666665555543 12222222222222 4566678899
Q ss_pred HHHHhhcCChhHHHHHHHHhhh
Q 005454 533 SNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 533 ~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+++|...|+.++|.++++.+.+
T Consensus 309 ~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 309 ADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHh
Confidence 9999999999999999998864
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.9e-06 Score=70.01 Aligned_cols=97 Identities=10% Similarity=0.035 Sum_probs=87.4
Q ss_pred CChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 005454 458 PSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 458 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
.+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++.+|.++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34577888999999999999999999874 3344 677899999999999999999999999999999999999999999
Q ss_pred HhhcCChhHHHHHHHHhhh
Q 005454 536 YAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 536 ~~~~g~~~~A~~~~~~m~~ 554 (696)
|...|++++|.+.+++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998866
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.22 E-value=6e-06 Score=68.93 Aligned_cols=96 Identities=19% Similarity=0.257 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
...+..+...+.+.|++++|.+.++++.. +.+..+|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56788889999999999999999987532 3467789999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhhhC
Q 005454 538 ACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~~ 555 (696)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988763
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0003 Score=69.79 Aligned_cols=231 Identities=12% Similarity=0.071 Sum_probs=156.8
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCCccc-hHHHHHHHHhhc-CchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhc-C-C
Q 005454 298 YTQNGKEEDALILFNEMLSEDVRPDKFS-ISSVVSSCAKLA-SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC-G-V 373 (696)
Q Consensus 298 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g-~ 373 (696)
....+..++|++++.+++. +.|+..| ++.--..+...+ .++++...+..++...++ +..+++.-...+.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 3444555678888888776 3444433 444444445556 477888888888776654 666676666666665 6 7
Q ss_pred hHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCc---
Q 005454 374 TDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDL--------EALALYDKLLQENLKPDSFTFVSVLSACLHADL--- 439 (696)
Q Consensus 374 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--- 439 (696)
.++++..++.+.. +|..+|+--.-.+.+.|.++ ++++.++++++.. +-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 8888888888774 46667777666666666666 8999999999864 4466777777777777765
Q ss_pred ----HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCH--------------------HHHHHHHHhCCC-------
Q 005454 440 ----FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV--------------------DKAVDLIKSLPH------- 488 (696)
Q Consensus 440 ----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~------- 488 (696)
+++++++++.+... -+-|...|+.+-.++.+.|+. .+..++...+..
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 68889988888763 344567777777777766653 334444444322
Q ss_pred -CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-hcCCCCCchHHHHHH
Q 005454 489 -KPNSLIWSTLLSVCAMKGDIKHGEMAARHLF-ELEPINAGPYIMLSN 534 (696)
Q Consensus 489 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~ 534 (696)
.+....+..|+..|...|+.++|.++++.+. +.+|.....+...+.
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2567789999999999999999999999997 678876665554443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.8e-05 Score=78.00 Aligned_cols=162 Identities=9% Similarity=-0.052 Sum_probs=113.0
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhcCC---CCCc------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNMMP---TRNV------VSWNSMINGYAQNGQDLEALALYDKLLQENL---KPD--SF 425 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 425 (696)
.+...+..+...|++++|...++... +... ..+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 33445667778888888888776433 1111 1234455667778899999999988876321 122 34
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-----hHHHHHHHHHHhccCCHHHHHHHHHhCCC-------CCC-H
Q 005454 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPS-----LDHYACMINLLGRSSDVDKAVDLIKSLPH-------KPN-S 492 (696)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~p~-~ 492 (696)
++..+...+...|++++|..+|+++.+.....|+ ...+..+...|.+.|++++|.+.+++... ... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888888999999999999888732222222 25788888899999999999988875321 111 5
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHHHhc
Q 005454 493 LIWSTLLSVCAMKGDIKHG-EMAARHLFEL 521 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 521 (696)
.+|..+...+...|+.++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5788888899999999999 7778887654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=69.72 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSL-PHKPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
...+..+...+...|++++|.+.+++. ...|+ ...|..+...+...|++++|...++++++.+|.++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 344555555566666666666666543 22344 3456666666666667777777777666666666666666666
Q ss_pred HHhhcCChhHHHHHHHHhhh
Q 005454 535 MYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 535 ~~~~~g~~~~A~~~~~~m~~ 554 (696)
+|...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777766666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=1e-05 Score=68.12 Aligned_cols=97 Identities=7% Similarity=0.059 Sum_probs=86.4
Q ss_pred ChHHHHHHHHHHhccCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 005454 459 SLDHYACMINLLGRSSDVDKAVDLIKSLP-HK-PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536 (696)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 536 (696)
+...+..+...+...|++++|.+.+++.. .. .+...|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45677788899999999999999998753 23 36778999999999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHhhhC
Q 005454 537 AACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 537 ~~~g~~~~A~~~~~~m~~~ 555 (696)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988763
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.9e-05 Score=69.94 Aligned_cols=127 Identities=9% Similarity=0.049 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 470 (696)
.|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++...+. .+.+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 44455555566666666666666655532 223455555555666666666666666665542 123345566666666
Q ss_pred hccCCHHHHHHHHHhCCC-CC-CHHHHH--HHHHHHHhcCChHHHHHHHHHHHh
Q 005454 471 GRSSDVDKAVDLIKSLPH-KP-NSLIWS--TLLSVCAMKGDIKHGEMAARHLFE 520 (696)
Q Consensus 471 ~~~g~~~~A~~~~~~~~~-~p-~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~ 520 (696)
.+.|++++|.+.+++... .| +...+. .++..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 666666666666654321 22 333332 233335566777777777666544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=2e-05 Score=68.16 Aligned_cols=78 Identities=14% Similarity=-0.012 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
..+..+...|...|++++|.+.+++.. ..| +...|..+..++...|++++|...++++++++|.++..+..+..+..+
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 344444455555555555555554321 123 456777888888889999999999999999999888877777666543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.4e-05 Score=72.00 Aligned_cols=133 Identities=11% Similarity=-0.042 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHh---hCCCC--C
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQ----ENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAV---HGITP--S 459 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p--~ 459 (696)
..++.+...+...|++++|+..+++..+ .+..|. ..++..+...+...|++++|...+++..+. .+-.| .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444455555555555555544433 111111 233444444555555555555555544332 11111 1
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP----HKPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
...+..+...+...|++++|...+++.. ..++ ..++..+...+...|++++|...+++++++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 2344555555555666666555554321 0111 1234556666666677777777776666543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-05 Score=71.31 Aligned_cols=108 Identities=14% Similarity=0.034 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 005454 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVC 502 (696)
Q Consensus 425 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~ 502 (696)
..+..+...+...|++++|+..|+...+. .+.+...|..+..+|.+.|++++|+..+++.. ..| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34444555555666666666666655542 12245556666666666677777666665532 233 467888999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
...|++++|...++++++++|.++..+...+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999987665543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=9.9e-06 Score=68.20 Aligned_cols=108 Identities=4% Similarity=-0.097 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh
Q 005454 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAM 504 (696)
Q Consensus 427 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~ 504 (696)
+..+...+...|++++|+..|+...+. -+.+...|..+..+|.+.|++++|.+.+++.. ..| +...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 333444444555555555555554432 12234455555555555666666655555422 123 45577778888888
Q ss_pred cCChHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 005454 505 KGDIKHGEMAARHLFELE------PINAGPYIMLSNMY 536 (696)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 536 (696)
.|++++|...++++++++ |.++.....+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888888 77766666665544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.15 E-value=7.4e-06 Score=70.81 Aligned_cols=108 Identities=7% Similarity=-0.041 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 005454 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCA 503 (696)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~ 503 (696)
.+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|...+++.. ..| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3344444555666666666666665542 12244555666666666666666666665532 123 4557778888888
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
..|++++|...+++++++.|.++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 89999999999999999998887765554333
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.11 E-value=7.9e-06 Score=70.63 Aligned_cols=62 Identities=8% Similarity=-0.017 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFEL-------EPINAGPY----IMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
..|..+..++...|++++|...+++++++ +|+++.+| ...+.++...|++++|+..|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38889999999999999999999999999 99999999 9999999999999999999998865
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0003 Score=69.44 Aligned_cols=229 Identities=14% Similarity=0.072 Sum_probs=122.1
Q ss_pred HhcCChh-HHHHHHHHhccCCCCCCccc-hHHHHHHHHhhcC----------chhHHHHHHHHHHhCCCCchHHHHHHHh
Q 005454 299 TQNGKEE-DALILFNEMLSEDVRPDKFS-ISSVVSSCAKLAS----------LYHGQVVHGKAVVLGVDDDLLVSSALID 366 (696)
Q Consensus 299 ~~~g~~~-~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~ 366 (696)
.+.|.++ +|++++..++. +.|+..| |+.--..+...+. ++.+..++..++...+. +..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3445554 67888888775 4455443 2221111111111 45666666666665543 5556665555
Q ss_pred hHHhcC--ChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC---
Q 005454 367 MYCKCG--VTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQ-DLEALALYDKLLQENLKPDSFTFVSVLSACLHA--- 437 (696)
Q Consensus 367 ~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--- 437 (696)
.+.+.| .++++..+++.+. .+|..+|+.-.-.+...|. ++++++.++++++.. +-|...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 555556 3667777776665 3466677766666666666 477777777777743 33344444443333322
Q ss_pred -----------CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc-----------CCHHHHHHHHHhCC-CCCCHHH
Q 005454 438 -----------DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS-----------SDVDKAVDLIKSLP-HKPNSLI 494 (696)
Q Consensus 438 -----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~-~~p~~~~ 494 (696)
+.++++++++...... -+-|...|+.+-.++.+. +.++++++.++++. ..||. .
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred cccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 3466666666666542 233445555454444443 34556666655532 24443 3
Q ss_pred HHHHHHHH-----HhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 495 WSTLLSVC-----AMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 495 ~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
|..+..+. ...|..++....+.+++++||...+.|.-+..
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 43222211 12455566666666667777665555554433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.09 E-value=2.2e-05 Score=82.73 Aligned_cols=144 Identities=11% Similarity=0.078 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 389 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
...|..+...|.+.|++++|+..|++.++. .|+...+ . .+... .... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~~~~-----~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----ASES-----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----HHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----HHHH-----HHHHHHHHHHH
Confidence 345666777777777777777777777662 2322100 0 00000 0000 11456777888
Q ss_pred HHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHH
Q 005454 469 LLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVA 546 (696)
Q Consensus 469 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 546 (696)
+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|...++++++++|.+..++..++.++...|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887642 233 56789999999999999999999999999999999999999999999999999887
Q ss_pred H-HHHHhhh
Q 005454 547 S-IRSSMKS 554 (696)
Q Consensus 547 ~-~~~~m~~ 554 (696)
+ .+++|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 5 4566643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.5e-06 Score=70.96 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHhCCCC----CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHH
Q 005454 473 SSDVDKAVDLIKSLPHK----PN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547 (696)
Q Consensus 473 ~g~~~~A~~~~~~~~~~----p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 547 (696)
.|++++|+..|++.... |+ ..+|..+..++...|++++|...++++++++|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666553221 32 34677777888888888888888888888888888888888888888888888888
Q ss_pred HHHHhhh
Q 005454 548 IRSSMKS 554 (696)
Q Consensus 548 ~~~~m~~ 554 (696)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877755
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=3.8e-06 Score=77.42 Aligned_cols=94 Identities=13% Similarity=0.011 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCC----CCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLP----HKPN--------------SLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
..+..+...+.+.|++++|.+.|++.. ..|+ ..+|..+..++...|++++|...++++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 445566677777777777777776532 1221 2688889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 523 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
|.++.++..++.+|...|++++|.+.+++..+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00031 Score=69.29 Aligned_cols=216 Identities=10% Similarity=0.030 Sum_probs=152.5
Q ss_pred hhcCc-hhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCC----------hHHHHHHHhcCC---CCCchHHHHHHHHHH
Q 005454 335 KLASL-YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV----------TDDAWTVFNMMP---TRNVVSWNSMINGYA 400 (696)
Q Consensus 335 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~ 400 (696)
..|.+ ++|......++...+. +..+++.--..+...|. ++++...++.+. +++..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 34444 4788888888887654 44555544333333332 567777777665 467789998888888
Q ss_pred HcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCc-HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc----
Q 005454 401 QNGQ--DLEALALYDKLLQENLKPDSFTFVSVLSACLHADL-FERGQNHFDSISAVHGITPSLDHYACMINLLGRS---- 473 (696)
Q Consensus 401 ~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---- 473 (696)
..|+ +++++++++++.+.. +-|...|+.-...+...|. +++++++++.+.+. -+-|...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 8884 899999999999954 4456777776666777787 68999999999874 244566777666665554
Q ss_pred ----------CCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCCCCchHH
Q 005454 474 ----------SDVDKAVDLIKSLP-HK-PNSLIWSTLLSVCAMK-----------GDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 474 ----------g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
+.++++++++++.. .. -|..+|+-+-..+... +.++++.+.++++++++|++...+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 45788998887743 33 4777888776666554 4578999999999999999855544
Q ss_pred HHHHH---HhhcCChhHHHHHHHHhhh
Q 005454 531 MLSNM---YAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 531 ~l~~~---~~~~g~~~~A~~~~~~m~~ 554 (696)
.++.. ....|..+++...+.++.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 44332 2246777888888888876
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.6e-05 Score=65.64 Aligned_cols=94 Identities=17% Similarity=0.123 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------CchHHH
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN-------AGPYIM 531 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 531 (696)
..+..+...+...|++++|...+++... +.+...|..+...+...|++++|...++++++..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4556667777778888888877766421 2356788888888999999999999999999988766 778999
Q ss_pred HHHHHhhcCChhHHHHHHHHhhh
Q 005454 532 LSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 532 l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
++.+|...|++++|.+.+++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999998876
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.9e-05 Score=67.40 Aligned_cols=99 Identities=4% Similarity=-0.120 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 005454 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSV 501 (696)
Q Consensus 424 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~ 501 (696)
...+..+...+...|++++|...|+..... .+.+...+..+...|...|++++|...+++.. ..| +...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 344445555555555555555555555442 12234455555566666666666666555432 123 45677778888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCC
Q 005454 502 CAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
+...|+++.|...++++++++|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888776
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.6e-05 Score=67.03 Aligned_cols=89 Identities=17% Similarity=0.100 Sum_probs=64.1
Q ss_pred HHHHHhccCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CchHHHHHHHHh
Q 005454 466 MINLLGRSSDVDKAVDLIKSLPH-KPNS----LIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN---AGPYIMLSNMYA 537 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 537 (696)
+...+.+.|++++|.+.|++... .|+. ..+..+..++...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 44555666677777666655321 2322 366677777788888888888888888888887 566888888888
Q ss_pred hcCChhHHHHHHHHhhh
Q 005454 538 ACGRWEDVASIRSSMKS 554 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~ 554 (696)
..|++++|...+++..+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888887765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.99 E-value=3.4e-05 Score=77.62 Aligned_cols=115 Identities=13% Similarity=0.058 Sum_probs=75.7
Q ss_pred hcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC--CCC----------------chHHHHHHH
Q 005454 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRN----------------VVSWNSMIN 397 (696)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~----------------~~~~~~li~ 397 (696)
.++++.|...+....+..+ .+...+..+...|.+.|++++|...|++.. .|+ ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444333221 146678889999999999999999998765 232 356777777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHH
Q 005454 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452 (696)
Q Consensus 398 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 452 (696)
+|.+.|++++|+..|++.++.. +.+...+..+..++...|++++|+..|+++.+
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777776632 22345666666666666666666666666654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.99 E-value=3.8e-05 Score=62.52 Aligned_cols=99 Identities=11% Similarity=0.022 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC---CHHHHHHHHHH
Q 005454 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP---NSLIWSTLLSV 501 (696)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~ll~~ 501 (696)
.+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|.+.+++.. ..| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444444455555555555555555442 12234455555666666666666666665431 223 45677777777
Q ss_pred HHhc-CChHHHHHHHHHHHhcCCCCC
Q 005454 502 CAMK-GDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 502 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 526 (696)
+... |++++|.+.++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7788 888888888888888877654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.98 E-value=6.6e-05 Score=78.51 Aligned_cols=163 Identities=9% Similarity=-0.090 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhcCCcHHHHHHHHHHhHHhh---CCCC-ChH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSF----TFVSVLSACLHADLFERGQNHFDSISAVH---GITP-SLD 461 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~ 461 (696)
++..++..|...|++++|.+.+.++...- ..++.. +...+-..+...|..+++..++....... +..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667788888888888888887765421 112221 22223334456788888888887765421 2222 245
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---C----C
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSLP-------HKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI---N----A 526 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~----~ 526 (696)
.+..++..|...|++++|..++++.. .+|. ..++..++..|...|++++|...+++++...+. + .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 77788899999999999988886531 1232 347888888999999999999999988776422 2 1
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 527 GPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
..+..++..+...|++++|.+.+....
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 346778888889999999988876664
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.96 E-value=4.2e-05 Score=80.95 Aligned_cols=117 Identities=9% Similarity=0.079 Sum_probs=64.5
Q ss_pred HHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCc
Q 005454 364 LIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADL 439 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 439 (696)
+...|.+.|++++|...|++.. ..+..+|..+..+|.+.|++++|++.+++.++. .|+ ..++..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 3445566677777776666543 234556666666666677777777777666663 333 4556666666666666
Q ss_pred HHHHHHHHHHhHHhhCCCCChHHHHHHHHH--HhccCCHHHHHHHHH
Q 005454 440 FERGQNHFDSISAVHGITPSLDHYACMINL--LGRSSDVDKAVDLIK 484 (696)
Q Consensus 440 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 484 (696)
+++|.+.|+++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666665431 1122233333333 555566666666555
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.95 E-value=3.2e-05 Score=75.59 Aligned_cols=106 Identities=4% Similarity=-0.119 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005454 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLS 500 (696)
Q Consensus 423 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 500 (696)
+...+..+...+...|++++|+..|+...+. .+.+...|..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4456666777777888888888888877753 2235667777778888888888888877763 3344 4557777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCchHH
Q 005454 501 VCAMKGDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
++...|++++|...++++++++|+++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 110 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence 788888888888888888887776654433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.91 E-value=3.2e-05 Score=65.04 Aligned_cols=114 Identities=7% Similarity=-0.011 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 470 (696)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+++.+.... |+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~----------- 70 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE----------- 70 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc-----------
Confidence 45555555666666666666666655532 2233444445555555555555555555544321 00
Q ss_pred hccCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 471 GRSSDVDKAVDLIKSLPHKPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 471 ~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
..++ ..+|..+..++...|+++.|...++++++..| ++.....+..++.
T Consensus 71 -----------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 -----------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp -----------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred -----------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 0111 44666777777778888888888888888777 4555555554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=5.1e-05 Score=79.82 Aligned_cols=124 Identities=8% Similarity=-0.008 Sum_probs=92.4
Q ss_pred HhcCCcHHHHHHHHHHhHHhhC--CCC---C-hHHHHHHHHHHhccCCHHHHHHHHHhC--------C-CCCCHH-HHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHG--ITP---S-LDHYACMINLLGRSSDVDKAVDLIKSL--------P-HKPNSL-IWST 497 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~--~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~~--------~-~~p~~~-~~~~ 497 (696)
+...|++++|+.++++..+... +.| + ..+++.|..+|...|++++|..++++. + ..|+.. +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466777777777776654321 112 2 356778888888888888888777653 1 235544 7889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh-----cCCCCCch---HHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 498 LLSVCAMKGDIKHGEMAARHLFE-----LEPINAGP---YIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
|...|...|++++|+.+++++++ ++|+.|.+ ...|..++...|++++|..++.++++...
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999877 45776654 56788889999999999999999987543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.89 E-value=6.6e-05 Score=65.76 Aligned_cols=61 Identities=11% Similarity=0.075 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPI------NAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
++..+...+...|++++|...+++++++.+. ....+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5556666667777777777777777665321 134577888888888888888888877643
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00013 Score=61.34 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISA 452 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 452 (696)
++..+...+.+.|++++|++.|++.++. .|+ ..+|..+..++...|++++|++.++...+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555666666667777777777666663 333 45555666666666666666666666554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00045 Score=74.46 Aligned_cols=169 Identities=8% Similarity=0.022 Sum_probs=132.6
Q ss_pred ChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC-
Q 005454 373 VTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQ----------DLEALALYDKLLQENLKPDSFTFVSVLSACLHAD- 438 (696)
Q Consensus 373 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g- 438 (696)
..++|.+.++.+. ..+...|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 3456677777665 3355678777777777776 899999999998853 334567777777777888
Q ss_pred -cHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccC-CHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhc---------
Q 005454 439 -LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS-DVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMK--------- 505 (696)
Q Consensus 439 -~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~--------- 505 (696)
+++++++.++++.+. -+-+...|+.-..++.+.| .++++.++++++.. .| |..+|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999874 2445677888888888888 89999999988644 34 677998888777663
Q ss_pred -----CChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhH
Q 005454 506 -----GDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544 (696)
Q Consensus 506 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 544 (696)
+.++++.+.++++++++|.+..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999998655
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.86 E-value=2.3e-05 Score=78.99 Aligned_cols=147 Identities=10% Similarity=-0.009 Sum_probs=79.8
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 389 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
...|..+...+.+.|++++|+..|++.+. +.|+... +...|..+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 34566677777788888888888888777 3455432 223344444332221 136777888
Q ss_pred HHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH-hhcCChhHH
Q 005454 469 LLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY-AACGRWEDV 545 (696)
Q Consensus 469 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 545 (696)
+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|...++++++++|.++.++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999988887642 234 5678888899999999999999999999999999988888888884 445677777
Q ss_pred HHHHHHhhhC
Q 005454 546 ASIRSSMKSK 555 (696)
Q Consensus 546 ~~~~~~m~~~ 555 (696)
.+.+++|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888777553
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=5.4e-05 Score=63.16 Aligned_cols=95 Identities=7% Similarity=0.023 Sum_probs=54.2
Q ss_pred HHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 005454 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGD 507 (696)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~ 507 (696)
+...+...|++++|+..|+.+.+. -+.+...|..+..++.+.|++++|+..+++.. ..| +...|..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334445555555555555555542 12234555555566666666666666665432 233 45577777788888888
Q ss_pred hHHHHHHHHHHHhcCCCCC
Q 005454 508 IKHGEMAARHLFELEPINA 526 (696)
Q Consensus 508 ~~~a~~~~~~~~~~~p~~~ 526 (696)
+++|...++++++++|.++
T Consensus 101 ~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhCcCCC
Confidence 8888888888888887653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00013 Score=61.19 Aligned_cols=102 Identities=9% Similarity=-0.021 Sum_probs=58.4
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcC
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKSLP-HKPN----SLIWSTLLSVCAMKG 506 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g 506 (696)
.+...|++++|...|+.+.+...-.|. ...+..+...+.+.|++++|.+.+++.. ..|+ ..++..+..++...|
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 344455555555555554432110010 0344455555566666666665555431 1222 446677777888888
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 507 DIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
++++|...++++++..|+++........
T Consensus 91 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 91 KNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 8888888888888888877655444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.84 E-value=6.4e-05 Score=60.17 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 490 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+...|..+...+...|++++|...++++++++|.++.+|..++.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999999999999998765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00034 Score=73.05 Aligned_cols=159 Identities=11% Similarity=-0.016 Sum_probs=101.1
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHhCCC-Cc----hHHHHHHHhhHHhcCChHHHHHHHhcCCC-----C----CchHH
Q 005454 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVD-DD----LLVSSALIDMYCKCGVTDDAWTVFNMMPT-----R----NVVSW 392 (696)
Q Consensus 327 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~ 392 (696)
..+...|...|++++|...+..+.+.... ++ ..+.+.+...+...|+.+.|..+++.... . -..++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 34445555555555555555554432111 11 12233344445566777777777765431 1 12367
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC--CC--CCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-----hHH
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQE--NL--KPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-----LDH 462 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~ 462 (696)
..+...|...|++++|..++++.... +. +|. ..++..++..|...|++++|..++++......-.++ ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 78888999999999999999887652 11 222 346777888899999999999999887653211121 356
Q ss_pred HHHHHHHHhccCCHHHHHHHHHh
Q 005454 463 YACMINLLGRSSDVDKAVDLIKS 485 (696)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~ 485 (696)
+..++..+...|++++|...|..
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 77788888999999999877654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.82 E-value=8.4e-05 Score=75.72 Aligned_cols=136 Identities=15% Similarity=0.020 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP-SLDHYACMINL 469 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 469 (696)
.|..+...+.+.|++++|++.|++.++. .|+.. ..... +... ...| +...|..+..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGA---KLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHH---HHHHHHHHHHHHHHHH
Confidence 4666677777777777777777776651 11100 00000 0100 1122 35678888899
Q ss_pred HhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHH
Q 005454 470 LGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547 (696)
Q Consensus 470 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 547 (696)
|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|.+..++..+..++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999874 3345 567899999999999999999999999999999999999999999999998887765
Q ss_pred H
Q 005454 548 I 548 (696)
Q Consensus 548 ~ 548 (696)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.82 E-value=7e-06 Score=67.13 Aligned_cols=93 Identities=13% Similarity=0.016 Sum_probs=74.1
Q ss_pred ChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------CchHH
Q 005454 459 SLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN------AGPYI 530 (696)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 530 (696)
+...+..+...+.+.|++++|.+.+++.. ..| +..+|..+..++...|++++|...++++++++|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 44566777788888888888888887642 233 56788899999999999999999999999999998 67788
Q ss_pred HHHHHHhhcCChhHHHHHHHH
Q 005454 531 MLSNMYAACGRWEDVASIRSS 551 (696)
Q Consensus 531 ~l~~~~~~~g~~~~A~~~~~~ 551 (696)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888887777665543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.81 E-value=3.1e-05 Score=66.88 Aligned_cols=116 Identities=11% Similarity=-0.054 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCC-CChHHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT-PSLDHYACMINL 469 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~ 469 (696)
.+......+.+.|++++|+..|++.++ +.|+...- ++ .... .+...|..+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~--------------~a----------~~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE--------------EA----------FDHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT--------------SC----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch--------------hh----------hhhccchHHHHHHHHHH
Confidence 445556666677777777777777766 34431000 00 0000 011245555555
Q ss_pred HhccCCHHHHHHHHHh--------CCCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 005454 470 LGRSSDVDKAVDLIKS--------LPHKPNSL-IW----STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532 (696)
Q Consensus 470 ~~~~g~~~~A~~~~~~--------~~~~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 532 (696)
+.+.|++++|+..+++ ....|+.. .| .....++...|++++|...|+++++++|.+...+..+
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 5555555555554433 23367644 88 8999999999999999999999999999988765544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00011 Score=64.32 Aligned_cols=132 Identities=13% Similarity=0.066 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC----hH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENL-KPD----SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LD 461 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 461 (696)
++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 345555556666666666666665544210 011 124555556666677777777777665542111111 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSLP-------HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
.+..+...+...|++++|.+.+++.. ..+ ...++..+...+...|++++|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56666777777777777777765431 111 13366777788888899999999988887754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.80 E-value=9.4e-05 Score=75.33 Aligned_cols=64 Identities=6% Similarity=0.002 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+..+|..+..++.+.|++++|...++++++++|.++.+|..++.+|...|++++|.+.+++..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3568889999999999999999999999999999999999999999999999999999998876
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.78 E-value=6e-05 Score=75.90 Aligned_cols=152 Identities=9% Similarity=0.010 Sum_probs=80.1
Q ss_pred hHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 005454 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437 (696)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 437 (696)
...+..+...|.+.|++++|...|+.....+.... .+...|+..++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45577788899999999999999987653221111 1222333344433221 13677778888899
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCCH-HHHHHHHHH-HHhcCChHHHHHH
Q 005454 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKPNS-LIWSTLLSV-CAMKGDIKHGEMA 514 (696)
Q Consensus 438 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~ll~~-~~~~g~~~~a~~~ 514 (696)
|++++|+..++...+. -+.+...|..+..+|...|++++|...|++.. ..|+. .++..|... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988763 23356788889999999999999999998864 34543 355555544 2345677888899
Q ss_pred HHHHHhcCCCCC
Q 005454 515 ARHLFELEPINA 526 (696)
Q Consensus 515 ~~~~~~~~p~~~ 526 (696)
++++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999988765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.78 E-value=4.6e-05 Score=67.37 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-chHHHHHHHH
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA-GPYIMLSNMY 536 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 536 (696)
...|..+..+|.+.|++++|...+++.. ..| +...|..+..++...|++++|...++++++++|.++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567778888888888888888887642 234 566899999999999999999999999999999887 4455554443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00017 Score=75.92 Aligned_cols=95 Identities=6% Similarity=-0.094 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCCC-CCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLPH-KPN----------------SLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 523 (696)
..+..+...|.+.|++++|...|++... .|+ ..+|..+..++.+.|++++|...++++++++|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3455555666666666666666654321 122 46889999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 524 INAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
.++.+|..++.+|...|++++|...+++..+.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.71 E-value=3.8e-05 Score=63.60 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=58.1
Q ss_pred CCcHHHHHHHHHHhHHhhC--CCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHH
Q 005454 437 ADLFERGQNHFDSISAVHG--ITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGE 512 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~ 512 (696)
.|++++|+..|++..+. + -+.+...+..+..+|.+.|++++|.+.+++.. ..| +..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34555556666555431 1 01223455666666666777777766666532 123 4567778888888889999999
Q ss_pred HHHHHHHhcCCCCCchHH
Q 005454 513 MAARHLFELEPINAGPYI 530 (696)
Q Consensus 513 ~~~~~~~~~~p~~~~~~~ 530 (696)
..++++++..|.++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999888888766543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00014 Score=56.66 Aligned_cols=81 Identities=22% Similarity=0.264 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
...+..+...+.+.|++++|...+++.. ..| +..+|..+...+...|++++|...++++++++|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4456666777777777777777776532 223 56678888888999999999999999999999999888888888887
Q ss_pred hcC
Q 005454 538 ACG 540 (696)
Q Consensus 538 ~~g 540 (696)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00053 Score=53.66 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 489 KPNSLIWSTLLSVCAMKGD---IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 489 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
++|...+..+..++...++ .++|..+++++++++|+++.+...++..+...|++++|+..|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567788888888865555 79999999999999999999999999999999999999999999988654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0001 Score=60.68 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=64.3
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 478 KAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 478 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+|.+.+++. ...| +...|..+...+...|++++|...++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455442 2233 5678888999999999999999999999999999999999999999999999999999988865
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00019 Score=75.56 Aligned_cols=116 Identities=12% Similarity=-0.003 Sum_probs=87.9
Q ss_pred HHHhccCCHHHHHHHHHhCC---------CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCc---hH
Q 005454 468 NLLGRSSDVDKAVDLIKSLP---------HKPNS-LIWSTLLSVCAMKGDIKHGEMAARHLFEL-----EPINAG---PY 529 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~---~~ 529 (696)
..+...|++++|+.++++.. ..|+. .+++.|..+|...|++++|+.+++++++. +|++|. .+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34567899999998886531 12443 38899999999999999999999999874 466554 58
Q ss_pred HHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHH
Q 005454 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601 (696)
Q Consensus 530 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~ 601 (696)
..|+.+|..+|++++|..++++..+--.+ .-+..||...++...+.+...+++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988652110 0125799998888777766655543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00029 Score=72.98 Aligned_cols=116 Identities=9% Similarity=0.036 Sum_probs=86.1
Q ss_pred HHHHhccCCHHHHHHHHHhCC------C---CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCc---h
Q 005454 467 INLLGRSSDVDKAVDLIKSLP------H---KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFEL-----EPINAG---P 528 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~~~------~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~---~ 528 (696)
+.-+.+.|++++|++++++.. . .|+ ..+++.|..+|...|++++|+.+++++++. +|.+|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888877776531 1 122 237888999999999999999999998874 455554 5
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHH
Q 005454 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600 (696)
Q Consensus 529 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~ 600 (696)
+..|+.+|..+|++++|..++++..+--.. .-+..||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999988652110 012579999999888888887775
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=5.4e-05 Score=65.26 Aligned_cols=84 Identities=7% Similarity=0.040 Sum_probs=61.3
Q ss_pred cCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 473 SSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGD----------IKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 473 ~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
.+.+++|.+.+++.. ..| +...|..+..++...++ +++|+..++++++++|++..+|..++++|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 344555555554421 223 44455555555555444 569999999999999999999999999999875
Q ss_pred -----------ChhHHHHHHHHhhhCC
Q 005454 541 -----------RWEDVASIRSSMKSKN 556 (696)
Q Consensus 541 -----------~~~~A~~~~~~m~~~~ 556 (696)
++++|.+.|++..+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 8999999999987743
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00036 Score=56.59 Aligned_cols=66 Identities=9% Similarity=-0.027 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
+...|..+...+...|++++|...++++++++|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999999999999999999999999999999987643
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0016 Score=55.41 Aligned_cols=88 Identities=8% Similarity=-0.064 Sum_probs=47.8
Q ss_pred HHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh----
Q 005454 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA---- 538 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 538 (696)
..+|...+.+++|.++|++.-...+...+..|...|.. .+|.++|...++++.+. .++.++..|+.+|..
T Consensus 32 g~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~ 109 (138)
T 1klx_A 32 SLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGV 109 (138)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCC
Confidence 33333333444444444433222344445555555544 55666666666666655 345566666666666
Q ss_pred cCChhHHHHHHHHhhhCC
Q 005454 539 CGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 539 ~g~~~~A~~~~~~m~~~~ 556 (696)
.+++++|.+.+++..+.|
T Consensus 110 ~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 110 VKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 666677777666666554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00081 Score=52.06 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 492 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
...|..+...+...|++++|...++++++.+|.++.++..++.+|...|++++|.+.+++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 457888889999999999999999999999999999999999999999999999999998876
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0022 Score=54.65 Aligned_cols=113 Identities=10% Similarity=-0.090 Sum_probs=93.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc----cCCHH
Q 005454 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR----SSDVD 477 (696)
Q Consensus 402 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~ 477 (696)
.++.++|++.|++..+.| .|+.. +...+...+.+++|.++|++..+. -+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356789999999999987 44444 666777778889999999998763 466777888888877 88999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCC
Q 005454 478 KAVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHGEMAARHLFELEP 523 (696)
Q Consensus 478 ~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 523 (696)
+|.++|++.-...+...+..|...|.. .+|.++|...++++.+.+.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999886656678888889888888 8999999999999998764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.001 Score=68.77 Aligned_cols=82 Identities=6% Similarity=0.045 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCc---hHHHHHH
Q 005454 473 SSDVDKAVDLIKSL---------PHKPNS-LIWSTLLSVCAMKGDIKHGEMAARHLFEL-----EPINAG---PYIMLSN 534 (696)
Q Consensus 473 ~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~---~~~~l~~ 534 (696)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++. +|++|. .|..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666542 112433 37888899999999999999999988773 455554 5889999
Q ss_pred HHhhcCChhHHHHHHHHhhh
Q 005454 535 MYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 535 ~~~~~g~~~~A~~~~~~m~~ 554 (696)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998865
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00026 Score=60.96 Aligned_cols=102 Identities=8% Similarity=-0.064 Sum_probs=56.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHH
Q 005454 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479 (696)
Q Consensus 400 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 479 (696)
.+.+++++|++.+++.++.. +-+...|..+..++...++++.+.... +.+++|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------~~~~eA 65 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK--------------------------QMIQEA 65 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------HHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH--------------------------hHHHHH
Confidence 34555666666666666632 223455555555555554432111100 012345
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCCCCch
Q 005454 480 VDLIKSL-PHKP-NSLIWSTLLSVCAMK-----------GDIKHGEMAARHLFELEPINAGP 528 (696)
Q Consensus 480 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~ 528 (696)
+..|++. ...| +..+|..+..+|... |++++|...|+++++++|++...
T Consensus 66 i~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 66 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 5444442 2233 233555555555554 58999999999999999987543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00074 Score=55.32 Aligned_cols=81 Identities=14% Similarity=0.089 Sum_probs=49.3
Q ss_pred HHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005454 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520 (696)
Q Consensus 443 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (696)
++..|+...+ .-+.+...+..+...|.+.|++++|...+++.. ..| +...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444443 112234555566666666666666666665432 123 455777777778888888888888888887
Q ss_pred cCCCC
Q 005454 521 LEPIN 525 (696)
Q Consensus 521 ~~p~~ 525 (696)
+.|.+
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 77643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0058 Score=65.77 Aligned_cols=148 Identities=14% Similarity=0.067 Sum_probs=118.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCc----------HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 005454 403 GQDLEALALYDKLLQENLKPDS-FTFVSVLSACLHADL----------FERGQNHFDSISAVHGITPSLDHYACMINLLG 471 (696)
Q Consensus 403 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 471 (696)
...++|++.+++++. +.|+. ..|+.--.++.+.|. ++++++.++.+.+. -+-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 445688999999999 56665 445544445555555 89999999999874 3445678888888888
Q ss_pred ccC--CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc-------
Q 005454 472 RSS--DVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKG-DIKHGEMAARHLFELEPINAGPYIMLSNMYAAC------- 539 (696)
Q Consensus 472 ~~g--~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 539 (696)
+.| ++++|.++++++.. .-+..+|+.-..++...| ..+++.+.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 77999999988643 347779999888888888 899999999999999999999999999998874
Q ss_pred -------CChhHHHHHHHHhhh
Q 005454 540 -------GRWEDVASIRSSMKS 554 (696)
Q Consensus 540 -------g~~~~A~~~~~~m~~ 554 (696)
++++++.+.+++...
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 567888888877754
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0028 Score=53.92 Aligned_cols=90 Identities=12% Similarity=0.047 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcC-C-CCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCcee
Q 005454 490 PNSLIWSTLLSVCAMKG---DIKHGEMAARHLFELE-P-INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564 (696)
Q Consensus 490 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s 564 (696)
++..+...+..++.+.+ ++++|..+++.+++.+ | .+...+..|+-+|.+.|++++|.++++...+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~---------- 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ---------- 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh----------
Confidence 56666777777777766 5668888888888877 5 4566777888888888888888888887766
Q ss_pred EEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCc
Q 005454 565 WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605 (696)
Q Consensus 565 ~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g~~ 605 (696)
..|+..+.......+.+++++.|.+
T Consensus 100 ----------------ieP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 100 ----------------TEPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------------cCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 2355555555556666677777764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0039 Score=49.48 Aligned_cols=64 Identities=11% Similarity=0.116 Sum_probs=40.3
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHH
Q 005454 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 452 (696)
+...|..+...|...|++++|+..|++.++.. +.+...|..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44566666666777777777777777766632 22244566666666677777777776666654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.054 Score=61.41 Aligned_cols=152 Identities=12% Similarity=0.071 Sum_probs=101.7
Q ss_pred HHcCCCHHHHHH-HHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 005454 201 YAKGGEIDKARW-LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL 279 (696)
Q Consensus 201 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 279 (696)
....+++++|.+ ++..++ +......++..+.+.|.+++|+++.+.-. .-+......|++++|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHH
Confidence 345788888887 664443 12233777778888888888887653211 113345678999999999
Q ss_pred HHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchH
Q 005454 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359 (696)
Q Consensus 280 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 359 (696)
.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....+-+.+...|.
T Consensus 675 ~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~----- 738 (814)
T 3mkq_A 675 LTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK----- 738 (814)
T ss_dssp HTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----
T ss_pred HHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-----
Confidence 87663 567899999999999999999999998764 44555555566666665555555544432
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhc
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNM 383 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~ 383 (696)
++....+|.++|++++|.+++.+
T Consensus 739 -~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 -FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp -HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -hHHHHHHHHHcCCHHHHHHHHHH
Confidence 23334456666777766665543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0063 Score=62.79 Aligned_cols=94 Identities=12% Similarity=-0.022 Sum_probs=66.2
Q ss_pred cCCcHHHHHHHHHHhHHhhC--CCCC----hHHHHHHHHHHhccCCHHHHHHHHHhC---------CCCCCHH-HHHHHH
Q 005454 436 HADLFERGQNHFDSISAVHG--ITPS----LDHYACMINLLGRSSDVDKAVDLIKSL---------PHKPNSL-IWSTLL 499 (696)
Q Consensus 436 ~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll 499 (696)
..|++++|..++++...... +.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34677777777776654321 2222 356778888888888888888877653 2235544 788999
Q ss_pred HHHHhcCChHHHHHHHHHHHh-----cCCCCCchH
Q 005454 500 SVCAMKGDIKHGEMAARHLFE-----LEPINAGPY 529 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 529 (696)
..|...|++++|+.+++++++ ++|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999877 457666543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0026 Score=50.19 Aligned_cols=52 Identities=23% Similarity=0.459 Sum_probs=25.5
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCc-hHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 502 CAMKGDIKHGEMAARHLFELEPINAG-PYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
+...|++++|...++++++.+|.++. .+..++.+|...|++++|.+.+++..
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455555555555555554444 44445555555555555555544443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.036 Score=54.81 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=68.9
Q ss_pred CCCchHHHHHHHHHHH--cCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC
Q 005454 386 TRNVVSWNSMINGYAQ--NGQ---DLEALALYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPS 459 (696)
Q Consensus 386 ~~~~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 459 (696)
..+..+|...+.+... .+. ..+|..+|++.++ +.|+. ..+..+..++.. ....+ |.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~--------------~~~~~--~~ 252 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV--------------RHSQH--PL 252 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--------------HHHHS--CC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--------------HhccC--CC
Confidence 4467777777766542 333 4789999999988 57774 344433333320 00001 10
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLPH-KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
.... . . .+..|.+....+.. +.+..+|.++...+...|+++.|...++++++++| +...|..++.++.-
T Consensus 253 ~~~~--~-~------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 253 DEKQ--L-A------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEM 322 (372)
T ss_dssp CHHH--H-H------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred chhh--H-H------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 0000 0 0 01122221122221 23444555555445555666666666666666654 34445555666666
Q ss_pred cCChhHHHHHHHHhhh
Q 005454 539 CGRWEDVASIRSSMKS 554 (696)
Q Consensus 539 ~g~~~~A~~~~~~m~~ 554 (696)
.|++++|.+.+++...
T Consensus 323 ~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 323 KGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6666666666555543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.11 Score=42.41 Aligned_cols=139 Identities=12% Similarity=0.098 Sum_probs=91.5
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHH
Q 005454 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 480 (696)
-.|..++..++..+...+ .+..-|+-++--...+-+-+-..+.++.+-+.+.+ ..+|++....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 346666667776666552 23344444444333444444445555555432222 2355555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCc
Q 005454 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558 (696)
Q Consensus 481 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 558 (696)
.-+-.+. .+....+.-+.....+|..+.-.+++..++.-+|.+|+....++++|.+.|+..+|.+++++.-++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 5555443 233445566777888999999999999877777888999999999999999999999999999999974
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0071 Score=47.55 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=57.7
Q ss_pred HHHHHhccCCHHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCh
Q 005454 466 MINLLGRSSDVDKAVDLIKSLP-HKP-NSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 542 (696)
....+.+.|++++|.+.+++.. ..| +.. .|..+..++...|++++|...++++++++|.++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 3456677788888888877642 234 456 78888889999999999999999999999998877632 445
Q ss_pred hHHHHHHHH
Q 005454 543 EDVASIRSS 551 (696)
Q Consensus 543 ~~A~~~~~~ 551 (696)
.++...+++
T Consensus 78 ~~a~~~~~~ 86 (99)
T 2kc7_A 78 MDILNFYNK 86 (99)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 555555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.013 Score=60.58 Aligned_cols=95 Identities=11% Similarity=-0.013 Sum_probs=56.0
Q ss_pred cCCcHHHHHHHHHHhHHhh--CCCCC----hHHHHHHHHHHhccCCHHHHHHHHHhC--------C-CCCCHH-HHHHHH
Q 005454 436 HADLFERGQNHFDSISAVH--GITPS----LDHYACMINLLGRSSDVDKAVDLIKSL--------P-HKPNSL-IWSTLL 499 (696)
Q Consensus 436 ~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~--------~-~~p~~~-~~~~ll 499 (696)
..|++++|+.++++..... -+.|+ ..+++.+..+|...|++++|+.++++. + ..|+.. +++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 4455555555555444311 11111 245555666666666666666665542 1 234433 678888
Q ss_pred HHHHhcCChHHHHHHHHHHHh-----cCCCCCchHH
Q 005454 500 SVCAMKGDIKHGEMAARHLFE-----LEPINAGPYI 530 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 530 (696)
..|...|++++|+.+++++++ ++|++|.+-.
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 888888888888888888876 4577665543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.039 Score=54.58 Aligned_cols=39 Identities=5% Similarity=-0.162 Sum_probs=34.4
Q ss_pred HHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 518 LFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 518 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
.+..+|.++.+|..++..+...|++++|...+++....+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 446779999999999999998999999999999998765
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.00018 Score=72.35 Aligned_cols=358 Identities=9% Similarity=0.070 Sum_probs=201.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCC
Q 005454 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237 (696)
Q Consensus 158 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 237 (696)
.|..++.++.+.|.+++-..++....+. ..++.+=+.|+-+|++.+++.+-++++. .||+.-...+..-|...|.
T Consensus 85 ~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~l 159 (624)
T 3lvg_A 85 SYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKM 159 (624)
T ss_dssp SSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccC
Confidence 3444444444444444444444433333 2244555789999999999765444322 2677777788888888899
Q ss_pred chHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccC
Q 005454 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317 (696)
Q Consensus 238 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 317 (696)
++.|.-+|..+... ..|...+.+.|++..|.+.-++ ..++.+|-.+-.+|...+.+.-|.-.--.++
T Consensus 160 YeAAKilys~isN~---------akLAstLV~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniI-- 226 (624)
T 3lvg_A 160 YDAAKLLYNNVSNF---------GRLASTLVHLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-- 226 (624)
T ss_dssp STTSSTTGGGSCCC---------TTTSSSSSSCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH--
T ss_pred HHHHHHHHHhCccH---------HHHHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhc--
Confidence 88888777654322 2222234455555554322211 2477789999999999998877655444443
Q ss_pred CCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHh----cCCCC------
Q 005454 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN----MMPTR------ 387 (696)
Q Consensus 318 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~----~~~~~------ 387 (696)
+.|| .+..++..|-..|.+++.+.+++..... -.....+++-|.-.|+|-. .++-.+-++ ++.-|
T Consensus 227 -vhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 227 -VHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp -CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred -ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHH
Confidence 2333 3445666778888888888888776632 2357888999998888753 333333333 22222
Q ss_pred -CchHHHHHHHHHHHcCChHHHHHHH-------------HHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHh
Q 005454 388 -NVVSWNSMINGYAQNGQDLEALALY-------------DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453 (696)
Q Consensus 388 -~~~~~~~li~~~~~~g~~~~A~~l~-------------~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 453 (696)
....|.-++-.|.+-.+++.|.... .+.+. -.+|...|...++-|.... +..--.++..+..
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~--KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~p- 377 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK-PLLLNDLLMVLSP- 377 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG--GCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHCT-
T ss_pred HHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH--HcchHHHHHHHHHHHHHhC-hHHHHHHHHhccc-
Confidence 3457888888888888888775421 11111 1234444444444443321 1111112211111
Q ss_pred hCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH------------HHHHHhc
Q 005454 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA------------ARHLFEL 521 (696)
Q Consensus 454 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~------------~~~~~~~ 521 (696)
.+.++ ..+..+.+.|++.-...++......-+..+-.++-..+....|++.-+.. .+++-+.
T Consensus 378 -rlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH 451 (624)
T 3lvg_A 378 -RLDHT-----RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH 451 (624)
T ss_dssp -TCCST-----TTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC
T ss_pred -cCChH-----HHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC
Confidence 11111 23556666666666666666665555666666666667666665432221 1111111
Q ss_pred CCCCCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 522 EPINAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 522 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
+-...-..-+.+|.+.++|+++..+.+
T Consensus 452 --eL~eFRrIAA~LYkkn~rw~qsi~l~K 478 (624)
T 3lvg_A 452 --ELIEFRRIAAYLFKGNNRWKQSVELCK 478 (624)
T ss_dssp --SSHHHHHHHHHHHHTTCHHHHHSSCSS
T ss_pred --chHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 111223345566788888888877653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.084 Score=59.78 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=24.4
Q ss_pred HhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHH
Q 005454 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415 (696)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 415 (696)
..+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44555555555554442 3345555555555555665555555554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.03 Score=53.07 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=67.7
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCC-CchHHHHHHHHhhc-CChhH
Q 005454 476 VDKAVDLIKSL-PHKPN---SLIWSTLLSVCAM-----KGDIKHGEMAARHLFELEPIN-AGPYIMLSNMYAAC-GRWED 544 (696)
Q Consensus 476 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 544 (696)
..+|...+++. ...|+ ...|..|...|.. -|+.++|++.|++++++.|+. ..+++.++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555542 33565 4577888877777 499999999999999999975 99999999999995 99999
Q ss_pred HHHHHHHhhhCCCcCCC
Q 005454 545 VASIRSSMKSKNVKKFA 561 (696)
Q Consensus 545 A~~~~~~m~~~~~~~~~ 561 (696)
|.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999886665434
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.049 Score=43.31 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=48.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 005454 463 YACMINLLGRSSDVDKAVDLIKSLP---------HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532 (696)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 532 (696)
+-.|...+.+.|+++.|...++... ..+...++..|..++.+.|+++.|...++++++++|.++.+...+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3344555555555555555544321 123456888999999999999999999999999999987765554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.11 Score=44.12 Aligned_cols=92 Identities=10% Similarity=-0.009 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC---cHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHH
Q 005454 407 EALALYDKLLQENLKPDSFTFVSVLSACLHAD---LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483 (696)
Q Consensus 407 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 483 (696)
.+.+.|.+..+.| .++..+...+..++.+++ ++++|+.+|+...+. . .|+
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~------------------------ 68 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKE------------------------ 68 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHH------------------------
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-Ccc------------------------
Confidence 3444455444444 245555555555555555 445666666655542 1 110
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 484 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
-+...+-.|.-+|.+.|++++|.+.++++++.+|++..+...
T Consensus 69 ------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 69 ------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp ------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ------chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 022345567778899999999999999999999987665444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.052 Score=44.30 Aligned_cols=70 Identities=19% Similarity=0.012 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHhccCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 458 PSLDHYACMINLLGRSSDVDK---AVDLIKSLPHK--P--NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 458 p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~--p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
|+..+--.+..++.+.....+ ++.+++.+-.. | .....-.|.-++.+.|+++.|.+.++.+++.+|.|..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 444444445555555554443 44444443221 2 1112233344455555555555555555555554443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.011 Score=59.78 Aligned_cols=113 Identities=7% Similarity=0.053 Sum_probs=61.0
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCCCCCc------------hHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV------------VSWNSM-INGYAQNGQDLEALALYDKLLQENLKPD 423 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------------~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (696)
+..+-.++-+.|....+++.-+.-.+.-..-|. .-+..+ ...|.+++++++++++.++ .+
T Consensus 409 ~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk---- 481 (624)
T 3lvg_A 409 NKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DS---- 481 (624)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TC----
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---cc----
Confidence 344555666777777776655544443332222 222222 2345566777776655322 11
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHH
Q 005454 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482 (696)
Q Consensus 424 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 482 (696)
.|.-.+.....+|+.+-+.++++-..+. -+.+.|...+-.+...=+++-++++
T Consensus 482 --lykDAietAa~S~~~elaeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 482 --LYKDAMQYASESKDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp --CTTGGGTTTTTCCCTTHHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred --cHHHHHHHHHHcCCHHHHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHH
Confidence 1222344456677777777777776653 2445555555555566666777666
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.11 Score=40.27 Aligned_cols=76 Identities=12% Similarity=0.011 Sum_probs=53.4
Q ss_pred CCChHHHHHHHHHHhccCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 457 TPSLDHYACMINLLGRSSD---VDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 457 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
+++...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|...|+++++.+|.+ .....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHH
Confidence 3456667777777654443 67888887764 2344 45677778888899999999999999999999883 33334
Q ss_pred HH
Q 005454 532 LS 533 (696)
Q Consensus 532 l~ 533 (696)
+.
T Consensus 82 i~ 83 (93)
T 3bee_A 82 II 83 (93)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.45 Score=39.46 Aligned_cols=91 Identities=8% Similarity=-0.037 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCC-CchHHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCcee
Q 005454 489 KPNSLIWSTLLSVCAMKG---DIKHGEMAARHLFELEPIN-AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564 (696)
Q Consensus 489 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s 564 (696)
.|+..+--.+..++.+.. +..++..+++.++...|.+ ......|+-++.+.|++++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---------- 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---------- 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------
Confidence 456655556666666554 4557888888888877743 34566778888888888888888888866
Q ss_pred EEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCc
Q 005454 565 WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605 (696)
Q Consensus 565 ~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g~~ 605 (696)
..|...+....-..+.++|.+.|.+
T Consensus 106 ----------------~eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 106 ----------------HERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ----------------TCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ----------------cCCCcHHHHHHHHHHHHHHHHhchh
Confidence 2355555555555566777777764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.82 Score=39.79 Aligned_cols=127 Identities=12% Similarity=0.108 Sum_probs=67.1
Q ss_pred HHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 005454 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447 (696)
Q Consensus 368 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 447 (696)
...+|+++.|.++.+.+ .+...|..+.......|+.+-|.+.|++..+ |..+.-.|.-.|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 45667777777766554 3455677777777777777777777766543 223333344455554444333
Q ss_pred HHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005454 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518 (696)
Q Consensus 448 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (696)
+....+ | -++.....+.-.|+++++.+++.+...-|.... ....+|--+.|.++.+.+
T Consensus 84 ~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 84 NIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 322221 1 123333445556777777777766543222111 123355555566555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.61 E-value=3.3 Score=35.95 Aligned_cols=102 Identities=12% Similarity=0.102 Sum_probs=67.7
Q ss_pred HHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHH
Q 005454 267 CFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346 (696)
Q Consensus 267 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 346 (696)
...+|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+....+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 45778888888887766 4567788888888888888888888887653 445555566667766665555
Q ss_pred HHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC
Q 005454 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385 (696)
Q Consensus 347 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 385 (696)
+.....|- ++.....+.-.|+++++.++|.+..
T Consensus 84 ~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 55544442 2333444555667776666665543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.52 E-value=0.21 Score=39.51 Aligned_cols=64 Identities=13% Similarity=-0.010 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELE-------PINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+......|...+...|+++.|...++.+++.. +..+..+..|+.+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34455678888999999999999999998863 23455799999999999999999999998866
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.38 Score=52.72 Aligned_cols=54 Identities=15% Similarity=0.042 Sum_probs=50.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
.-|...|+++.|..+.+++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 346678999999999999999999999999999999999999999999999884
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.00 E-value=7 Score=37.91 Aligned_cols=137 Identities=8% Similarity=0.014 Sum_probs=80.6
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHH----HHhHHCCCCCCcchHHHHHHHHHc
Q 005454 93 WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF----SRMQKDRFEPTDYTHVSALNACAQ 168 (696)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~~ 168 (696)
|.++..-|.+.+++++|++++-. -...+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 45566667777777777765432 122344555555554443 444456677777766666666655
Q ss_pred cCChH-----HHHHHHHHHHHcC--CCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchH
Q 005454 169 LLDLR-----RGKQIHGKIVVGN--LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240 (696)
Q Consensus 169 ~~~~~-----~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 240 (696)
...-+ -..+...+-.+.| ..-|+.....+...|.+.+++.+|+..|---.++++..+..|+..+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 44311 1222233333434 345778888899999999999999998843222334677666666655554433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.52 E-value=1.5 Score=35.62 Aligned_cols=88 Identities=10% Similarity=0.014 Sum_probs=54.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHH---HHHHHHHhHHhhCCCC--ChHHHHHHHHHHhccCC
Q 005454 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER---GQNHFDSISAVHGITP--SLDHYACMINLLGRSSD 475 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~ 475 (696)
.......+.+-|.+....| .|+..+-..+..++.++..... ++.+++.+.+. -.| ..+..-.|.-++.+.|+
T Consensus 13 ~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhh
Confidence 3344455566666665554 3666666667777777766555 77777777652 223 23444456667778888
Q ss_pred HHHHHHHHHhCC-CCCC
Q 005454 476 VDKAVDLIKSLP-HKPN 491 (696)
Q Consensus 476 ~~~A~~~~~~~~-~~p~ 491 (696)
+++|.++++.+. .+|+
T Consensus 90 Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 888888877642 3453
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.06 E-value=0.64 Score=38.05 Aligned_cols=65 Identities=6% Similarity=-0.080 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCC-CCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 490 PNSLIWSTLLSVCAMKG---DIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 490 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
|+..+--.+..++.+.. +..+|..+++.+++.+|. ....+..|+-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444554443 344666667777666653 234456667777777777777777776654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.01 E-value=12 Score=38.33 Aligned_cols=164 Identities=10% Similarity=0.022 Sum_probs=94.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc-----chHHHHHHHHHhcCCHHHHHHHHHhccC------CC----hh
Q 005454 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE-----VTVSNILGACFQTGRIDDAGRLFHVIKE------KD----NV 289 (696)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~A~~~~~~~~~------~~----~~ 289 (696)
...|...|...|++.+|.+++..+...-...+. ..+...++.|...+++..|..++.++.. ++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677788888888888888887644222222 2455566678888888888887776531 11 22
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccC-CCCCCccchHHHHH---HHH-hhcCchhHHHHHHHHHHhCCCCchHHHHHH
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVS---SCA-KLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~---~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 364 (696)
.+..++..+...+++.+|-..|.+.... ....|...+..++. .|. -.+....-..+..........++...+..|
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 4566677777888888888888777542 11112222221111 111 111112222223333333333567788888
Q ss_pred HhhHHhc--CChHHHHHHHhcCCCCC
Q 005454 365 IDMYCKC--GVTDDAWTVFNMMPTRN 388 (696)
Q Consensus 365 i~~y~~~--g~~~~A~~~~~~~~~~~ 388 (696)
+.+|... .+++.+...|.....++
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred HHHHHhchHhhhHHHHHHHHHHhccc
Confidence 8888764 46778888887665443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=15 Score=39.34 Aligned_cols=250 Identities=12% Similarity=0.007 Sum_probs=126.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCch
Q 005454 261 SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340 (696)
Q Consensus 261 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 340 (696)
..-+..+.+.+++.....++.. ...+...-.....+....|+..+|......+-..| .........++..+...|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 3445556777888887776666 33444444445666777788777877777776554 334455666666666555443
Q ss_pred hH--HHHHHHHHHhC-----------CCCc-hHHHHHHHhhHHhcCChHHHHHHHhcCCCCCch---HHHHHHHHHHHcC
Q 005454 341 HG--QVVHGKAVVLG-----------VDDD-LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV---SWNSMINGYAQNG 403 (696)
Q Consensus 341 ~a--~~~~~~~~~~~-----------~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g 403 (696)
.. .+-+..+...| +.++ ......++..+.+- ..+....... .++.. .+..-+.-+++ .
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCChhhHHHHHHHHHHHHh-c
Confidence 21 11122222221 1111 11111222222111 1112222111 11111 11111222333 3
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHH
Q 005454 404 QDLEALALYDKLLQEN-LKPDSF--TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480 (696)
Q Consensus 404 ~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 480 (696)
+.+.|..+|....+.. +.+... ....+.......+...++...+...... .++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 7788888888876543 222221 2222333334445345666666654331 233333333444445779999999
Q ss_pred HHHHhCCCCC-C-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005454 481 DLIKSLPHKP-N-SLIWSTLLSVCAMKGDIKHGEMAARHLFE 520 (696)
Q Consensus 481 ~~~~~~~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (696)
..|+.|+..+ + ..-.--+..+....|+.++|..+++.+.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999887643 2 22222334466778899999998888875
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=90.98 E-value=0.41 Score=45.38 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCC
Q 005454 474 SDVDKAVDLIKSL-PHKPN--SLIWSTLLSVCAM-KGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 474 g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~ 524 (696)
|+.++|.+.|++. ...|+ ..++......++. .|+.+.+.+.+++++..+|.
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 4444444444432 12332 3344444444444 35566666666666665554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.89 E-value=24 Score=39.57 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcC
Q 005454 194 RNALTDMYAKGGEIDKARWLFDRMN 218 (696)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~ 218 (696)
|..++.++.+.++.+.+.++|.++.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445556666677777777777653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=88.94 E-value=8.5 Score=31.53 Aligned_cols=140 Identities=11% Similarity=-0.001 Sum_probs=89.6
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHH
Q 005454 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377 (696)
Q Consensus 298 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 377 (696)
+.-.|..++..++..+.... .+..-++.++--....-+-+...++++.+-+ ..| ...||++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHH
Confidence 34467777777777776642 2333444444444333333333333333221 111 2467777777
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCC
Q 005454 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456 (696)
Q Consensus 378 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 456 (696)
...+-.+.. +....+.-+..+...|.-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.++-+. |+
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 777666544 334556667888889999999998888655 35788888888999999999999999999888764 54
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.81 E-value=20 Score=34.45 Aligned_cols=137 Identities=10% Similarity=0.082 Sum_probs=79.3
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHH----HHHhHHCCCCCCcchHHHHHHHHHc
Q 005454 93 WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV----FSRMQKDRFEPTDYTHVSALNACAQ 168 (696)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~~ 168 (696)
|.++..-|.+.+++++|++++.. -...+.+.|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45566666777777777765432 12234445555555443 3444455677776666666666544
Q ss_pred cCC-----hHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhC---CCc
Q 005454 169 LLD-----LRRGKQIHGKIVVGN--LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN---GQP 238 (696)
Q Consensus 169 ~~~-----~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 238 (696)
... ..-......+-.+.| ...++.....+...|.+.|++.+|+..|-.-...|...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 321 122223333333333 2247788889999999999999999988633223566666666655554 544
Q ss_pred hH
Q 005454 239 KK 240 (696)
Q Consensus 239 ~~ 240 (696)
.+
T Consensus 185 ~e 186 (312)
T 2wpv_A 185 ST 186 (312)
T ss_dssp HH
T ss_pred ch
Confidence 44
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=87.65 E-value=6.3 Score=33.04 Aligned_cols=119 Identities=18% Similarity=0.139 Sum_probs=65.8
Q ss_pred CCChhHHHHHHHHHHhCCCc------hHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHhccCCChhHH
Q 005454 219 NRNLVSWNLMISGYLKNGQP------KKCIDLFQEMQLLGLNPDEV-TVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291 (696)
Q Consensus 219 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 291 (696)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .+..-+..+.+ |
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIr---------------------Y 67 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVR---------------------F 67 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHH---------------------H
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHH---------------------H
Confidence 35777888888888877888 6777777766653 455421 11111110000 1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHH
Q 005454 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364 (696)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 364 (696)
. .+...++.++|.++|+.++..+-+- ...+.....--.+.|++..|+++++.++..+..|....-.++
T Consensus 68 A----~~~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 68 A----ELKAIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp H----HHHHHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred H----HHHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 1 1122367777777887776531111 222222222234578888888888888887776554444433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.54 E-value=3 Score=32.07 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 404 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
+.-+..+-++.+....+.|++....+.+.||.+.+++..|.++|+.++.+ ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 44567777778888889999999999999999999999999999998764 3444556776655
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=86.31 E-value=5.5 Score=33.39 Aligned_cols=106 Identities=11% Similarity=0.110 Sum_probs=61.2
Q ss_pred CCChhHHHHHHHHHHhcCCh------hHHHHHHHHhccCCCCCCccc-hHHHHH------HHHhhcCchhHHHHHHHHHH
Q 005454 285 EKDNVCWTTMIVGYTQNGKE------EDALILFNEMLSEDVRPDKFS-ISSVVS------SCAKLASLYHGQVVHGKAVV 351 (696)
Q Consensus 285 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~t-~~~ll~------~~~~~~~~~~a~~~~~~~~~ 351 (696)
..|..+|-..+...-+.|++ ++..++|++.... ++|+... +..-+. .+...++++.|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888888888 8888888888764 6665321 111111 11223566666666666555
Q ss_pred hCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005454 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423 (696)
Q Consensus 352 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (696)
..-.. . ..|.....--.++|+...|.+++.+.+..+.+|.
T Consensus 89 ~hKkF-A-------------------------------Kiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 89 NCKKF-A-------------------------------FVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCTTB-H-------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HhHHH-H-------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 31111 2 2343344444556777777777777776554443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.28 E-value=1.8 Score=36.94 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=63.5
Q ss_pred CCCCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh-------HHHHHHHHHHhccCCHHHHHHHHHhC--
Q 005454 418 ENLKPDSF--TFVSVLSACLHADLFERGQNHFDSISAVHGITPSL-------DHYACMINLLGRSSDVDKAVDLIKSL-- 486 (696)
Q Consensus 418 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-- 486 (696)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45666543 44555666777888888887777655433333432 35566677778888887777777652
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 487 -----PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 487 -----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
+..|+.. .++ . ..... ..-..+ +.+.+.-..++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~~--~~~-~---~~ss~-------p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVR--PST-G---NSAST-------PQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCcc--ccc-c---ccCCC-------cccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1112110 000 0 00000 000011 223345677999999999999999999765
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.46 E-value=2.3 Score=42.98 Aligned_cols=67 Identities=12% Similarity=0.009 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh-----CCCcCCC
Q 005454 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS-----KNVKKFA 561 (696)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 561 (696)
...++.++...|+.+++...++.++..+|-+-..|..|..+|.+.|+..+|.+.|+...+ -|+.|.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 345666777889999999999999999998888999999999999999999999887753 4665544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.41 E-value=6.1 Score=33.73 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=14.3
Q ss_pred HHHHHHhccCCHHHHHHHHHhCCC
Q 005454 465 CMINLLGRSSDVDKAVDLIKSLPH 488 (696)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~~~~ 488 (696)
-+...|.+.|+.++|+.+++.+|.
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHCCHHHHHHHHhcCCc
Confidence 345555666666666666666654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.22 E-value=33 Score=32.89 Aligned_cols=83 Identities=10% Similarity=0.047 Sum_probs=50.0
Q ss_pred CchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005454 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN---GQDLEALALYDKLLQENLKPDSFTFVSVLS 432 (696)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 432 (696)
-++.....+...|.+.|++.+|+.-|-.-...+...+..|+.-+... |...++-- ..-..++
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaVL- 196 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLVF- 196 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHHH-
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHH-
Confidence 47788889999999999999999887633322444554444433333 33333211 1111222
Q ss_pred HHhcCCcHHHHHHHHHHhHHh
Q 005454 433 ACLHADLFERGQNHFDSISAV 453 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~ 453 (696)
-|.-.|++..|...|+...+.
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 244567888888888876653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.04 E-value=44 Score=34.12 Aligned_cols=184 Identities=10% Similarity=0.088 Sum_probs=88.2
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCC------CCC----chHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHH-
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMP------TRN----VVSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDSFTFV- 428 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~------~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~- 428 (696)
+..-+..|...+++..|..++.++. .++ ...+..++..+...+++.+|...|.+..+. ...-|...+.
T Consensus 180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~ 259 (445)
T 4b4t_P 180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKP 259 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHH
Confidence 3334455555566666555555432 011 123455556666667777777666665431 0111221111
Q ss_pred ---HHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc--CCHHHHHHHHHhCCCC-C-------CHHHH
Q 005454 429 ---SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS--SDVDKAVDLIKSLPHK-P-------NSLIW 495 (696)
Q Consensus 429 ---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~-p-------~~~~~ 495 (696)
.++.+..-++..+.-..+....... ..-++...|..++.+|... .+++.+.+.|+..... | ...-|
T Consensus 260 ~L~~~v~~~iLa~~~~~~~~ll~~~~~~-~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 338 (445)
T 4b4t_P 260 VLSHIVYFLVLSPYGNLQNDLIHKIQND-NNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHW 338 (445)
T ss_dssp HHHHHHHHHHHSSCSSTTHHHHHSHHHH-SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHhhc-ccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHH
Confidence 1111111111111222222333332 2335677888888888653 4677777777653221 1 12345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 496 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
..|......|+ +..+.+ |-+...+..++..+.- ..+++.+....|...|.
T Consensus 339 ~~L~~~v~ehn--------l~~i~k--~Ys~I~l~~la~lL~l--~~~evE~~ls~mI~~g~ 388 (445)
T 4b4t_P 339 EDLQKRVIEHN--------LRVISE--YYSRITLLRLNELLDL--TESQTETYISDLVNQGI 388 (445)
T ss_dssp HHHHHHHHHHH--------HHHHHH--HEEEEEHHHHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHH--------HHHHHH--HhceeeHHHHHHHhCc--CHHHHHHHHHHHHHCCC
Confidence 55555444332 111111 2233445555555533 46788999988876654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.58 E-value=14 Score=28.18 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=57.8
Q ss_pred chhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005454 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418 (696)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 418 (696)
-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++-. .+.|..+++...+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3455555555544432 22222222345678899999999999999999999987644 4678888888888888877
Q ss_pred CCCCCHHHHHH
Q 005454 419 NLKPDSFTFVS 429 (696)
Q Consensus 419 g~~p~~~t~~~ 429 (696)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 666555544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.56 E-value=12 Score=28.65 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=54.3
Q ss_pred CchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 005454 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316 (696)
Q Consensus 237 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (696)
..++|..+-+.+...|. ....-.+-+..+...|++++|..+.+.+.-||.+.|-++... +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45666666666655442 222222223347789999999999999999999999887664 66777888888877776
Q ss_pred CC
Q 005454 317 ED 318 (696)
Q Consensus 317 ~g 318 (696)
.|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=81.78 E-value=73 Score=35.79 Aligned_cols=247 Identities=11% Similarity=0.020 Sum_probs=112.4
Q ss_pred HHhcCCHHHHHHHHHhccCC----Chh--HHHHHHHHHHhcCChhHHHHHHHHhccCCC-------CCCccchHHHHHHH
Q 005454 267 CFQTGRIDDAGRLFHVIKEK----DNV--CWTTMIVGYTQNGKEEDALILFNEMLSEDV-------RPDKFSISSVVSSC 333 (696)
Q Consensus 267 ~~~~g~~~~A~~~~~~~~~~----~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~t~~~ll~~~ 333 (696)
....|+.+++..+++..... +.. .-..+.-|....|..+++++++...+...- .+....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44566667777777665541 211 223334455566666667776666554211 00000111111112
Q ss_pred HhhcC-chhHHHHHHHHHHhCCCCch--HHHHHHHhhHHhcCChHHHHHHHhcCC-CC--CchHHHHHHHHHHHcCChHH
Q 005454 334 AKLAS-LYHGQVVHGKAVVLGVDDDL--LVSSALIDMYCKCGVTDDAWTVFNMMP-TR--NVVSWNSMINGYAQNGQDLE 407 (696)
Q Consensus 334 ~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~ 407 (696)
...|. -+++...+..++...-. .. ...-+|.-.|.-.|+.+....++..+. .. ++.-.-++.-++...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22222 23444444444442210 11 111233344555566666565555432 11 12222333334446677777
Q ss_pred HHHHHHHHHHCCCCCCH-HHHH---HHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHH
Q 005454 408 ALALYDKLLQENLKPDS-FTFV---SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483 (696)
Q Consensus 408 A~~l~~~m~~~g~~p~~-~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 483 (696)
+..+.+.+... +|. .-|. .+.-+|+..|+.....+++..+.. ....+......+.-++...|+.+.+.+++
T Consensus 543 ~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 543 ADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 77777777652 222 2222 233456677777666667777765 32333333333333444456655555665
Q ss_pred HhCCCCCCHHHHH--HHHHHHHhcCCh-HHHHHHHHHHH
Q 005454 484 KSLPHKPNSLIWS--TLLSVCAMKGDI-KHGEMAARHLF 519 (696)
Q Consensus 484 ~~~~~~p~~~~~~--~ll~~~~~~g~~-~~a~~~~~~~~ 519 (696)
+.+....|..+-. .+.-+....|+. ..+...+.++.
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 5443333333222 222222223332 45566666664
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.26 E-value=41 Score=32.57 Aligned_cols=83 Identities=10% Similarity=0.079 Sum_probs=48.9
Q ss_pred CCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005454 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434 (696)
Q Consensus 355 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 434 (696)
.-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+...+...+ +|...-..++. |
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL~-y 197 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVLP-Y 197 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHHH-H
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHHH-H
Confidence 35778888899999999999999988853223333555444444433332211 12222223332 4
Q ss_pred hcCCcHHHHHHHHHHhHH
Q 005454 435 LHADLFERGQNHFDSISA 452 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~ 452 (696)
.-.+++..|...++...+
T Consensus 198 L~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 198 LLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 456778888877766554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=81.18 E-value=43 Score=39.17 Aligned_cols=165 Identities=9% Similarity=-0.017 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCc
Q 005454 260 VSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339 (696)
Q Consensus 260 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 339 (696)
...++..+.+.+..+-+.++..-. +.+...--.+..+|...|++++|.+.|.+... |+..+......+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~-------- 884 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLRE-------- 884 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHH--------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcc--------
Confidence 345666677788888777765544 44555545567788999999999999988643 34333222111100
Q ss_pred hhHHHHHHHHHHhC--CCCchHHHHHHHhhHHhcCChHHHHHHHhc----CCCCCc----hHHHHHHHHHHHcCChHHHH
Q 005454 340 YHGQVVHGKAVVLG--VDDDLLVSSALIDMYCKCGVTDDAWTVFNM----MPTRNV----VSWNSMINGYAQNGQDLEAL 409 (696)
Q Consensus 340 ~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g~~~~A~ 409 (696)
+..+.... ...-...|..++..+.+.|..+.+.+.-+. ..+.+. ..|..+..++...|++++|.
T Consensus 885 ------~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 885 ------FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp ------HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred ------cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 11111111 111234566677777788877777655432 222221 25888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHH
Q 005454 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442 (696)
Q Consensus 410 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 442 (696)
..+-.+..... -...+..|+..++..|..+.
T Consensus 959 ~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 99888876433 34566667776666655443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.89 E-value=12 Score=41.03 Aligned_cols=53 Identities=17% Similarity=0.033 Sum_probs=45.8
Q ss_pred HHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC
Q 005454 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385 (696)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 385 (696)
-|...|+++.|..+-++++...+ .+..+|..|..+|.+.|+++.|+-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 35567899999999999988765 378899999999999999999999999886
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.33 E-value=11 Score=28.68 Aligned_cols=78 Identities=13% Similarity=0.033 Sum_probs=54.6
Q ss_pred CchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 005454 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316 (696)
Q Consensus 237 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (696)
..++|..+-+.+...|. ....-.+-+..+...|++++|..+.+.+.-||.+.|-++... +.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45666666666655442 222222223347789999999999999999999999887654 67888888888877776
Q ss_pred CC
Q 005454 317 ED 318 (696)
Q Consensus 317 ~g 318 (696)
.|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 64
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=80.32 E-value=10 Score=38.06 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHH----hhCCCCChHH
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA----VHGITPSLDH 462 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 462 (696)
..++..+...|++.+|+..++.+.... +-+...+..++.++...|+..+|.+.|+...+ +.|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345666777888888888888877642 44667888888888888888888888877644 3577777654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.09 E-value=7.6 Score=31.64 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 404 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
+.-+..+-++.+....+.|+.......+.+|.+.+++..|.++|+.++. ...+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~--K~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD--KAGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hcCCchhhHHHHHH
Confidence 3445666677777788999999999999999999999999999999886 44455667777665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 696 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 1e-04
Identities = 42/374 (11%), Positives = 103/374 (27%), Gaps = 22/374 (5%)
Query: 65 LLHFYAKSGKLFYARDLFDKMPLRD---IISWNALLSAHARSGSVQDLRALFDKM----P 117
L H ++G A ++ ++ L S H + + P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
+ N ++ Y +++A A ++
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
+ +L L + E V+W+ + + G+
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT-GRIDDAGRLFHVIKEKDNVC---WTT 293
I F+ + + L+P+ + LG + D A +
Sbjct: 185 IWLAIHHFE--KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
+ Y + G + A+ + + P +++ K +
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300
Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFN----MMPTRNVVSWNSMINGYAQNGQDLEAL 409
+ L ++ + G ++A ++ + P + +++ + Q G+ EAL
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEAL 359
Query: 410 ALYDKLLQENLKPD 423
Y + ++ + P
Sbjct: 360 MHYKEAIR--ISPT 371
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 696 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.46 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.94 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.94 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.9 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.89 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.83 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.79 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.73 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.49 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.45 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.34 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.34 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.3 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.29 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.24 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.23 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.2 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.18 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.15 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.11 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.07 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.05 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.03 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.01 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.91 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.91 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.87 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.79 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.77 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.74 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.62 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.45 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.4 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.35 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.29 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.25 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.2 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.13 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.12 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.12 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.92 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.88 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.41 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.93 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.31 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.09 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.94 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.27 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.0 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.41 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 86.38 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.9e-20 Score=192.24 Aligned_cols=343 Identities=14% Similarity=0.120 Sum_probs=228.4
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005454 192 FVRNALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268 (696)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 268 (696)
..+..+...|.+.|++++|...|++..+ .+..+|..+...|.+.|++++|+..+........ .+............
T Consensus 34 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~ 112 (388)
T d1w3ba_ 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALV 112 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccc-cccccccccccccc
Confidence 3344444444444444444444444322 1233444444455555555555555554444321 11112222222222
Q ss_pred hcCCHHHHHHHHHhc---cCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHH
Q 005454 269 QTGRIDDAGRLFHVI---KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345 (696)
Q Consensus 269 ~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 345 (696)
..+....+....... ..................+....+...+.+..... +-+...+..+...+...++.+.|...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 191 (388)
T d1w3ba_ 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHH
Confidence 222222222222111 12233334444445555666666666666555431 22234445555566667777777777
Q ss_pred HHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005454 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422 (696)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 422 (696)
+..+++..+. +...+..+...|...|++++|...|+... ..+...|..+...+.+.|++++|+..|++.++. .|
T Consensus 192 ~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p 268 (388)
T d1w3ba_ 192 FEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QP 268 (388)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CS
T ss_pred HHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC
Confidence 7777665543 56677788888888889988888887654 345667888889999999999999999999884 45
Q ss_pred C-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 005454 423 D-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKPN-SLIWSTLL 499 (696)
Q Consensus 423 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 499 (696)
+ ..++..+...+...|++++|.+.++.... ..+.+...+..+...+.+.|++++|.+.+++. ...|+ ..+|..+.
T Consensus 269 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 346 (388)
T d1w3ba_ 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5 56888888999999999999999998876 34566788889999999999999999999874 44564 56899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (696)
.++...|++++|...++++++++|+++.+|..|+++|.+.|+
T Consensus 347 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.6e-20 Score=188.18 Aligned_cols=352 Identities=13% Similarity=0.045 Sum_probs=286.4
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCH
Q 005454 197 LTDMYAKGGEIDKARWLFDRMNN--R-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273 (696)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 273 (696)
+...+.+.|++++|.+.|+++.+ | +..+|..+...|.+.|++++|+..|++..+.. +-+..++..+...|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 45667788999999999988754 3 56789999999999999999999999998864 33456888899999999999
Q ss_pred HHHHHHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHH
Q 005454 274 DDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350 (696)
Q Consensus 274 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 350 (696)
++|...+..... .+...+..........+....+........... .................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 999999988764 344445555556666666666666666655432 2333444445555666777777777777777
Q ss_pred HhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 005454 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427 (696)
Q Consensus 351 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 427 (696)
..... +...+..+...+...|+.+.|...++... +.+...|..+...+...|++++|+..|++....+ +.+...+
T Consensus 163 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 76543 66778888999999999999999998664 3466789999999999999999999999998854 4556778
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc
Q 005454 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMK 505 (696)
Q Consensus 428 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~ 505 (696)
..+...+...|++++|...|+++.+. -+-+...+..+...|...|++++|.+.++.... +.+...+..+...+...
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 88888999999999999999998862 234467889999999999999999999987432 35677889999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 506 GDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 506 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
|++++|...++++++++|+++.++..++.+|...|++++|.+.+++..+
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998865
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=4.6e-13 Score=133.00 Aligned_cols=219 Identities=16% Similarity=0.103 Sum_probs=149.7
Q ss_pred HHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHH
Q 005454 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEAL 409 (696)
Q Consensus 333 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 409 (696)
+...|++++|...++.+++..+. +...+..+..+|...|++++|...|++.. +.+...|..+...|...|++++|.
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 107 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC 107 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence 33444444444444444443322 34445555555555555555555555433 234445556666666666666666
Q ss_pred HHHHHHHHCCCCCCHHH----------------HHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc
Q 005454 410 ALYDKLLQENLKPDSFT----------------FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473 (696)
Q Consensus 410 ~l~~~m~~~g~~p~~~t----------------~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 473 (696)
+.+++.... .|+... ....+..+...+...++...|..+.+...-.++...+..+...+...
T Consensus 108 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 185 (323)
T d1fcha_ 108 EILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 185 (323)
T ss_dssp HHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred cchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 666666552 222110 11112223344567788888888776433445677888899999999
Q ss_pred CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHH
Q 005454 474 SDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSS 551 (696)
Q Consensus 474 g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 551 (696)
|++++|...+++.. ..| +..+|..+...+...|++++|...++++++++|.++.+|..++.+|.+.|++++|++.+++
T Consensus 186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 265 (323)
T d1fcha_ 186 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 265 (323)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998742 344 5678999999999999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 005454 552 MKS 554 (696)
Q Consensus 552 m~~ 554 (696)
..+
T Consensus 266 al~ 268 (323)
T d1fcha_ 266 ALN 268 (323)
T ss_dssp HHH
T ss_pred HHH
Confidence 866
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.5e-12 Score=127.62 Aligned_cols=265 Identities=12% Similarity=0.076 Sum_probs=164.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcC
Q 005454 263 ILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLAS 338 (696)
Q Consensus 263 ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~ 338 (696)
....+.+.|++++|...|+.+.+ .+..+|..+...|...|++++|+..|.+..+. .|+ ...+..+...+...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--cccccccccccccccccccc
Confidence 34445566666666666665542 23445666666666666666666666665542 222 3334444445555555
Q ss_pred chhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005454 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418 (696)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 418 (696)
++.|...+..+......... ......... ...+.......+..+...+...+|.+.|.+.++.
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAH-LVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGG-GCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHH-HHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55555555555443321100 000000000 0001111111233344556778899999888773
Q ss_pred C-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHH
Q 005454 419 N-LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIW 495 (696)
Q Consensus 419 g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 495 (696)
. -.++...+..+...+...|++++|+..|+..... .+-+...|..+...|.+.|++++|.+.+++. ...| +..+|
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 2 1234567778888899999999999999998763 2334678889999999999999999999874 3345 46689
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch-----------HHHHHHHHhhcCChhHHHHH
Q 005454 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGP-----------YIMLSNMYAACGRWEDVASI 548 (696)
Q Consensus 496 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~~ 548 (696)
..+..+|...|++++|...++++++++|++..+ +..+..++...|+++.+...
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999887654 34456667677777655443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=1.7e-08 Score=100.19 Aligned_cols=258 Identities=11% Similarity=0.060 Sum_probs=173.5
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCCc------cchHHHHHHHHhhcCchhHHHHHHHHHHhCCC-----CchHHHHH
Q 005454 295 IVGYTQNGKEEDALILFNEMLSEDVRPDK------FSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-----DDLLVSSA 363 (696)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ 363 (696)
...+...|++++|++++++.++. .|+. ..+..+..++...|+++.|...+..+.+.... .....+..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 34456667777777777766553 2221 23444555666667777777777666543211 11234455
Q ss_pred HHhhHHhcCChHHHHHHHhcCC-------CCC----chHHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCHHHHH
Q 005454 364 LIDMYCKCGVTDDAWTVFNMMP-------TRN----VVSWNSMINGYAQNGQDLEALALYDKLLQENL----KPDSFTFV 428 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~-------~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~ 428 (696)
+...|...|++..|...+.... .+. ...+..+...+...|+.+.+...++....... .....++.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 6667778888888877766432 111 12455667788889999999999988876321 12234455
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-----hHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-----CHHHHHH
Q 005454 429 SVLSACLHADLFERGQNHFDSISAVHGITPS-----LDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-----NSLIWST 497 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-----~~~~~~~ 497 (696)
.....+...+...++...+........-... ...+..+...+...|++++|...++.... .| ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5556677788888888888776553322221 23456667788899999999999987532 11 2346677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc------CCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 498 LLSVCAMKGDIKHGEMAARHLFEL------EPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+..++...|++++|...+++++.. .|....++..++.+|...|++++|.+.+++..+
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999999998753 355566789999999999999999999987754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=4.5e-09 Score=99.70 Aligned_cols=200 Identities=11% Similarity=-0.047 Sum_probs=125.1
Q ss_pred chHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHH
Q 005454 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQ 401 (696)
Q Consensus 325 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 401 (696)
++..+..++...|+++.|...|..+++..+. ++.+++.+..+|.+.|++++|...|+++. +.+..+|..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 3444455666677777777777777766543 67778888888888888888888888765 3356678888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHH
Q 005454 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481 (696)
Q Consensus 402 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 481 (696)
.|++++|++.|++.++.. +.+......+..+....+..+....+...... ..+....++ ++..+...........
T Consensus 118 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHHH
Confidence 999999999999888743 22334433344444555555555555444433 222222222 2233222222222222
Q ss_pred HH-HhCCC----CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHH
Q 005454 482 LI-KSLPH----KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 482 ~~-~~~~~----~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
.. ..... .|+ ..+|..+...+...|++++|...++++++.+|++...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 22 11211 132 236777888899999999999999999999998765554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.94 E-value=7.2e-10 Score=109.95 Aligned_cols=229 Identities=9% Similarity=-0.036 Sum_probs=154.4
Q ss_pred cCChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhc--CchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHH
Q 005454 301 NGKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLA--SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377 (696)
Q Consensus 301 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 377 (696)
.|.+++|+..++...+. .|+ ...+.....++...+ +.+.+...+..+++.........+..+...+...|..+.|
T Consensus 86 ~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence 34456666666666543 232 233333444444433 3566666777766665432222333455677778889999
Q ss_pred HHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhh
Q 005454 378 WTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454 (696)
Q Consensus 378 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 454 (696)
...++.... .+..+|+.+...+.+.|++++|...+++..+ +.|+.. .+...+...+..+++...+.....
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~-- 236 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLL-- 236 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHH--
Confidence 998887774 3566888888888898988887766655444 223222 222334445666777777777765
Q ss_pred CCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 005454 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532 (696)
Q Consensus 455 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 532 (696)
.-+++...+..++..+...|+.++|.+.+.+. ...|+ ..+|..+...+...|+.++|...++++++++|.+...|..|
T Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 237 GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 33445556667777888889999999888764 44564 45888889999999999999999999999999988888888
Q ss_pred HHHHhh
Q 005454 533 SNMYAA 538 (696)
Q Consensus 533 ~~~~~~ 538 (696)
...+.-
T Consensus 317 ~~~~~~ 322 (334)
T d1dcea1 317 RSKFLL 322 (334)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 777764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.92 E-value=5.6e-08 Score=94.61 Aligned_cols=187 Identities=10% Similarity=0.068 Sum_probs=139.7
Q ss_pred cCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC---CC-chHHHHHHHHHHHcCChHHHHHHH
Q 005454 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---RN-VVSWNSMINGYAQNGQDLEALALY 412 (696)
Q Consensus 337 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~l~ 412 (696)
+..+.+..+++.+++...+.+...+...+..+.+.|+.+.|..+|+.+.. .+ ...|...+..+.+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34567788888888765556677888888888899999999999987642 23 336888888888899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC----C
Q 005454 413 DKLLQENLKPDSFTFVSVLSA-CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL----P 487 (696)
Q Consensus 413 ~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~ 487 (696)
+++++.+ +.+...|...... +...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|+++.|..+|++. +
T Consensus 158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 9988754 2233344433332 34467889999999988874 3445678888888888999999998888763 2
Q ss_pred CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 488 HKPN--SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 488 ~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
..|+ ...|...+.--..+|+.+.+..+.+++.++.|...
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 2332 45788888877888999999999888888887654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.3e-08 Score=99.40 Aligned_cols=186 Identities=9% Similarity=0.074 Sum_probs=89.0
Q ss_pred HHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcC
Q 005454 363 ALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNG-QDLEALALYDKLLQENLKPD-SFTFVSVLSACLHA 437 (696)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 437 (696)
.+...+.+.+..++|+.+++.+. +.+..+|+....++...| +.++|+..+++.++. .|+ ..+|..+...+...
T Consensus 48 ~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~~~~l 125 (315)
T d2h6fa1 48 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLVEWL 125 (315)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHHHHhh
Confidence 33344444445555555554443 223334555544444443 245555555555442 232 34444444455555
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC------hH
Q 005454 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGD------IK 509 (696)
Q Consensus 438 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~------~~ 509 (696)
|++++|+..++.+.+. -+.+...|..+..++.+.|++++|++.++++. ..| +...|+.+...+...+. ++
T Consensus 126 ~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~ 203 (315)
T d2h6fa1 126 RDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE 203 (315)
T ss_dssp TCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred ccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhH
Confidence 5555555555555431 12224455555555555555555555554432 122 34455544444433332 34
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 510 HGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 510 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
+|...+.++++++|.+..+|..++.++...| .+++.+.++...
T Consensus 204 ~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~ 246 (315)
T d2h6fa1 204 REVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHH
T ss_pred HhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHH
Confidence 5555666666666666666655555554433 344555554443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=1.6e-07 Score=93.04 Aligned_cols=287 Identities=8% Similarity=-0.058 Sum_probs=151.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCc------chHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhHHHH
Q 005454 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDE------VTVSNILGACFQTGRIDDAGRLFHVIKE-----KD----NVCWTT 293 (696)
Q Consensus 229 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~ 293 (696)
...+...|++++|++++++..+.. |+. ..+..+...|...|++++|...|+.... ++ ...+..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 344556666666666666665532 221 1333444455555666666655554431 11 123444
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCC---CCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHh
Q 005454 294 MIVGYTQNGKEEDALILFNEMLSED---VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370 (696)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 370 (696)
+...+...|++..+...+.+..... ..+... .....+..+...|..
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~-------------------------------~~~~~~~~la~~~~~ 145 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP-------------------------------MHEFLVRIRAQLLWA 145 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhh-------------------------------HHHHHHHHHHHHHHH
Confidence 5556666777777777666554310 000000 001122334444555
Q ss_pred cCChHHHHHHHhcCCC--------CCchHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhc
Q 005454 371 CGVTDDAWTVFNMMPT--------RNVVSWNSMINGYAQNGQDLEALALYDKLLQE----NLKPD--SFTFVSVLSACLH 436 (696)
Q Consensus 371 ~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~ 436 (696)
.|+++.+...+..... ....++..+...+...++..++...+.+.... +..+. ...+..+...+..
T Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T d1hz4a_ 146 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 225 (366)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh
Confidence 5555555554443320 11223444455566666666666666554431 11111 1233444455666
Q ss_pred CCcHHHHHHHHHHhHHhhCCCC--ChHHHHHHHHHHhccCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcC
Q 005454 437 ADLFERGQNHFDSISAVHGITP--SLDHYACMINLLGRSSDVDKAVDLIKSL-------PHKPN-SLIWSTLLSVCAMKG 506 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g 506 (696)
.|++++|...+........-.+ ....+..+...+...|++++|.+.+++. ...|+ ..++..+...+...|
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (366)
T d1hz4a_ 226 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305 (366)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC
Confidence 7777777777766543211111 1234455677777778887777777653 22333 336777778888888
Q ss_pred ChHHHHHHHHHHHhcCCCCC---------chHHHHHHHHhhcCChhHHHHH
Q 005454 507 DIKHGEMAARHLFELEPINA---------GPYIMLSNMYAACGRWEDVASI 548 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~ 548 (696)
++++|...+++++++.+... ..+..+...+...|+.+++.+-
T Consensus 306 ~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 306 RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 88888888888877653221 2234455556667777777653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=3.3e-08 Score=96.46 Aligned_cols=213 Identities=10% Similarity=0.125 Sum_probs=127.9
Q ss_pred HHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC-ChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHH
Q 005454 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG-VTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEA 408 (696)
Q Consensus 333 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 408 (696)
+.+.+..++|.+.+..+++..+. +...|+.....+...| ++++|...++... +.+..+|+.+...+...|++++|
T Consensus 53 ~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eA 131 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE 131 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHH
Confidence 33444445555555555554432 4445555555555554 3566666666543 34556777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCC------HHHHHHH
Q 005454 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD------VDKAVDL 482 (696)
Q Consensus 409 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~ 482 (696)
++.++++++.. +-+...|..+...+.+.|++++|++.++.+.+. -+.+...|+.+..++.+.|. +++|.+.
T Consensus 132 l~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~ 208 (315)
T d2h6fa1 132 LEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 208 (315)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchhhhhHHhHHH
Confidence 77777777632 233566777777777777777777777777653 12234556666555555444 5677776
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch--HHHHHHHHhhc--CChhHHHHHHH
Q 005454 483 IKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP--YIMLSNMYAAC--GRWEDVASIRS 550 (696)
Q Consensus 483 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~--g~~~~A~~~~~ 550 (696)
+.+. ...| +...|..+...+. ....+++...+++++++.|..... +..++.+|... +..+.+...++
T Consensus 209 ~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ 281 (315)
T d2h6fa1 209 TLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN 281 (315)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6553 3344 5667877766554 445678888899998888765544 45666776543 34344444333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=1.1e-08 Score=96.89 Aligned_cols=194 Identities=11% Similarity=0.030 Sum_probs=136.3
Q ss_pred hHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 005454 358 LLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSA 433 (696)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 433 (696)
..++..+..+|.+.|++++|...|++.. +.++.+|+.+..+|...|++++|++.|++.++. .|+ ..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHH
Confidence 3466677889999999999999999765 457789999999999999999999999999984 555 5678888899
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHH----hcCCh
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPNSLIWSTLLSVCA----MKGDI 508 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~~~----~~g~~ 508 (696)
+...|++++|...|+...+. .+.+......+...+.+.+..+.+..+...... .++...+. ++..+. ..+..
T Consensus 115 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHHH
Confidence 99999999999999998864 123344444444455555555444444332211 11111222 122221 12223
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 509 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
+.+...+.......|....+|..++.+|...|++++|.+.+++..+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 444444444455556667789999999999999999999999887644
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.79 E-value=3.7e-07 Score=88.60 Aligned_cols=184 Identities=8% Similarity=0.056 Sum_probs=144.0
Q ss_pred hcCChHHHHHHHhcCC----CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHH
Q 005454 370 KCGVTDDAWTVFNMMP----TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445 (696)
Q Consensus 370 ~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 445 (696)
..+..++|..+|++.. +.+...|...+..+...|+.++|..+|+++++.........|...+..+.+.|.++.|.+
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 3445677888887643 345668898999999999999999999999884322224578888999999999999999
Q ss_pred HHHHhHHhhCCCCChHHHHHHHHH-HhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 446 HFDSISAVHGITPSLDHYACMINL-LGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 446 ~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
+|+.+.+. .+.+...|...+.. +...|+.+.|..+|+.+.. +.+...|...+..+...|+++.|..+|++++...
T Consensus 156 i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 156 IFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 99998763 33344555555544 3456899999999987543 2456799999999999999999999999999988
Q ss_pred CCCCc----hHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 523 PINAG----PYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 523 p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
|.++. .|...+..-...|+.+.+.++.+++.+.
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76654 5777777778889999999999988653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.73 E-value=3.9e-09 Score=104.48 Aligned_cols=246 Identities=10% Similarity=-0.038 Sum_probs=174.1
Q ss_pred HhcCChhHHHHHHHHhccCCCCCCccch-H---HHHHH-------HHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhh
Q 005454 299 TQNGKEEDALILFNEMLSEDVRPDKFSI-S---SVVSS-------CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367 (696)
Q Consensus 299 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~---~ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 367 (696)
...+..++|++++.+.++ ..|+..+. + .++.. +...+.++.+...++.+++..+. +...+..+...
T Consensus 40 ~~~~~~~~al~~~~~~l~--~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~ 116 (334)
T d1dcea1 40 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 116 (334)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHH
Confidence 334445788888888875 45665432 1 12222 23345577888889998887654 66667667666
Q ss_pred HHhcC--ChHHHHHHHhcCC---CCCchHHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHH
Q 005454 368 YCKCG--VTDDAWTVFNMMP---TRNVVSWNS-MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441 (696)
Q Consensus 368 y~~~g--~~~~A~~~~~~~~---~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 441 (696)
+...+ ++++|...++.+. .++...|.. ....+...+.+++|+..++++++.+ +-+...|..+...+...|+++
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHH
Confidence 66655 5789998888765 345566654 4467777899999999999998853 334677888888888888888
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005454 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PH-KPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519 (696)
Q Consensus 442 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (696)
+|...+...... .|+ ...+...+...+..+++...+... .. .++...+..+...+...|+.++|...+.+.+
T Consensus 196 ~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 196 DSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp CSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 776665544432 121 112334455566677777666542 22 2344466677777888899999999999999
Q ss_pred hcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 520 ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 520 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+.+|.+..++..++.+|...|++++|.+.+++..+
T Consensus 270 ~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 270 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=5.6e-07 Score=72.87 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=73.1
Q ss_pred HHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChh
Q 005454 466 MINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 543 (696)
-...+.+.|++++|+..|++.. ..| +...|..+..++...|++++|...++++++++|.++.+|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 3566777888888888887642 234 56688888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 005454 544 DVASIRSSMKS 554 (696)
Q Consensus 544 ~A~~~~~~m~~ 554 (696)
+|...+++..+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999888875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.49 E-value=2.5e-07 Score=83.44 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 005454 458 PSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 458 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
|+...+...+..|.+.|++++|+..|++. ...| +..+|..+..+|...|+++.|...++++++++|.++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34444444455555555555555555442 2222 344566666666666666666666666666666666666666666
Q ss_pred HhhcCChhHHHHHHHHhh
Q 005454 536 YAACGRWEDVASIRSSMK 553 (696)
Q Consensus 536 ~~~~g~~~~A~~~~~~m~ 553 (696)
|...|++++|...+++..
T Consensus 82 ~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666666666666665554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=3.5e-06 Score=74.88 Aligned_cols=140 Identities=8% Similarity=-0.041 Sum_probs=102.5
Q ss_pred HhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHH
Q 005454 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERG 443 (696)
Q Consensus 365 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 443 (696)
...+...|+++.|++.|..+.+++...|..+..+|...|++++|++.|++.++. .|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 445778899999999999998888889999999999999999999999999884 454 56888888888999999999
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 444 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
...|++.... .+++... .+...| ...+++ ..++..+..++...|++++|...+++++++.
T Consensus 90 ~~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999887652 1221100 000000 000111 2345566777888888888888888888888
Q ss_pred CCC
Q 005454 523 PIN 525 (696)
Q Consensus 523 p~~ 525 (696)
|..
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=9.3e-07 Score=71.50 Aligned_cols=105 Identities=11% Similarity=-0.029 Sum_probs=81.9
Q ss_pred HHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCh
Q 005454 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-H-KPNSLIWSTLLSVCAMKGDI 508 (696)
Q Consensus 431 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~ 508 (696)
...+...|++++|+..|+...+. -+.+...|..+..+|...|++++|+..+++.. . +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 34566777788888888777653 23445677777888888888888888877642 2 34677899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 509 KHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 509 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
++|...++++++++|.++.++..+.++-+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 99999999999999999988888877654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1.9e-06 Score=74.05 Aligned_cols=89 Identities=12% Similarity=0.066 Sum_probs=75.0
Q ss_pred HHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChh
Q 005454 466 MINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 543 (696)
....|.+.|++++|+..|++.. ..| +...|..+..++...|++++|...++++++++|.+..+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 4566778888888888887643 234 56688888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 005454 544 DVASIRSSMKS 554 (696)
Q Consensus 544 ~A~~~~~~m~~ 554 (696)
+|...+++...
T Consensus 96 eA~~~~~~a~~ 106 (159)
T d1a17a_ 96 AALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988865
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.34 E-value=5.2e-06 Score=79.39 Aligned_cols=192 Identities=8% Similarity=-0.028 Sum_probs=129.8
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCCC-----CC----chHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHH
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMPT-----RN----VVSWNSMINGYAQNGQDLEALALYDKLLQENL---KPD--SFT 426 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t 426 (696)
|....+.|..+|++++|...|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+... .+. ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 33446678888888888888876542 22 24788889999999999999999988665210 111 245
Q ss_pred HHHHHHHHh-cCCcHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhccCCHHHHHHHHHhCCC----CC----CH-
Q 005454 427 FVSVLSACL-HADLFERGQNHFDSISAVHGITPS----LDHYACMINLLGRSSDVDKAVDLIKSLPH----KP----NS- 492 (696)
Q Consensus 427 ~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~p----~~- 492 (696)
+..+...|. ..|++++|++.++...+......+ ..++..+...|...|++++|.+.++++.. .+ ..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 556666664 469999999999987643221111 35678889999999999999999987421 11 11
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch-----HHHHHHHHhh--cCChhHHHHHHHHh
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-----YIMLSNMYAA--CGRWEDVASIRSSM 552 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~A~~~~~~m 552 (696)
..+...+..+...|+.+.|...+++..+.+|.-+.. ...|+.+|.. .+++++|++.++++
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 133445556678899999999999999999854432 3455556554 45688988888644
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.34 E-value=4.6e-07 Score=72.68 Aligned_cols=88 Identities=11% Similarity=-0.001 Sum_probs=78.1
Q ss_pred HHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCh
Q 005454 465 CMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542 (696)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 542 (696)
.+...+.+.|++++|...|++.. ..| +..+|..+..++...|++++|+..++++++++|.++.++..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 45667788899999998888743 345 5779999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHh
Q 005454 543 EDVASIRSSM 552 (696)
Q Consensus 543 ~~A~~~~~~m 552 (696)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=1.1e-06 Score=79.05 Aligned_cols=117 Identities=4% Similarity=-0.131 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005454 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLL 499 (696)
Q Consensus 422 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 499 (696)
|+...+......+...|++++|+..|..+... -+.+...|..+..+|.+.|++++|++.+++. ...| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 56666666777778888888888888877653 2345677888888888888888888888764 4456 456888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
.++...|++++|...++++++++|.+...+...+..+...+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~ 120 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999988876665555555444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2.4e-06 Score=76.00 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=80.6
Q ss_pred HHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHH
Q 005454 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVA 546 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 546 (696)
...+...|++++|++.|+++. +|+..+|..+..++...|++++|+..|+++++++|.++.+|..++.+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 455678999999999999874 6788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 005454 547 SIRSSMKS 554 (696)
Q Consensus 547 ~~~~~m~~ 554 (696)
+.+++...
T Consensus 91 ~~~~kAl~ 98 (192)
T d1hh8a_ 91 KDLKEALI 98 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.1e-05 Score=69.98 Aligned_cols=62 Identities=10% Similarity=-0.062 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+|..+..+|.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35677888889999999999999999999999999999999999999999999999998866
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=5e-06 Score=71.37 Aligned_cols=116 Identities=7% Similarity=-0.025 Sum_probs=86.3
Q ss_pred HHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCh
Q 005454 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDI 508 (696)
Q Consensus 431 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~ 508 (696)
...+.+.|++++|+..|+.+.+. -+.+...|..+...|...|++++|.+.|++.. ..| +..+|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 34566777777777777777653 13346677777778888888888888877642 244 456899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHH--hhcCChhHHHHH
Q 005454 509 KHGEMAARHLFELEPINAGPYIMLSNMY--AACGRWEDVASI 548 (696)
Q Consensus 509 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 548 (696)
++|...++++++++|.++..+..+..+. ...+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998888776664 344556666554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=3.9e-06 Score=67.97 Aligned_cols=106 Identities=16% Similarity=0.015 Sum_probs=78.6
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCH---HHHHHHHHhCCC-CCCH---HHHHHHHHH
Q 005454 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV---DKAVDLIKSLPH-KPNS---LIWSTLLSV 501 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~-~p~~---~~~~~ll~~ 501 (696)
.+++.+...+++++|.+.|+..... -+.+..++..+..+|.+.++. ++|+.+++++.. .|+. .+|..|..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 4566677777888888888877752 234567777777777765544 468888877433 3433 378889999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 005454 502 CAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536 (696)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 536 (696)
|...|++++|.+.++++++++|++..+...+..+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 99999999999999999999999988776665443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.18 E-value=1.5e-05 Score=76.04 Aligned_cols=120 Identities=11% Similarity=0.090 Sum_probs=68.3
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC-----CcchHHH
Q 005454 197 LTDMYAKGGEIDKARWLFDRMNN-----RN----LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP-----DEVTVSN 262 (696)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~t~~~ 262 (696)
..+.|...|++++|.+.|.+..+ .+ ..+|+.+...|.+.|++++|++.+++..+.-... ...++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 35567777777777777766543 12 2356777777777777777777777654321000 1223333
Q ss_pred HHHHHHh-cCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 005454 263 ILGACFQ-TGRIDDAGRLFHVIKE-----KD----NVCWTTMIVGYTQNGKEEDALILFNEMLS 316 (696)
Q Consensus 263 ll~~~~~-~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (696)
+...|.. .|++++|...+.+..+ .+ ..+|..+...|...|++++|+..|++...
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 3334433 4666666666655431 11 22355566666666777777776666554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.15 E-value=1.7e-05 Score=67.28 Aligned_cols=83 Identities=16% Similarity=0.081 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEE
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~ 572 (696)
.+|..+..++.+.|++++|...++++++++|.+..+|..++.+|...|++++|...+++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l----------------- 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL----------------- 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence 467788889999999999999999999999999999999999999999999999999988662
Q ss_pred EEEEecCCCCcccHHHHHHHHHHHHHHHH
Q 005454 573 HKFVSEDRTHPETEIIYEELSKLIKKLQE 601 (696)
Q Consensus 573 ~~f~~~~~~~p~~~~i~~~l~~l~~~m~~ 601 (696)
.|...++...+..+..++++
T Consensus 131 ---------~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 131 ---------NPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp ---------STTCHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHHHH
Confidence 36666777777777777754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=1.5e-05 Score=69.00 Aligned_cols=134 Identities=12% Similarity=0.017 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 470 (696)
.+......+.+.|++++|+..|++.++. .|.... ..+.-......+ ....|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~------------~~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESS------------FSNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCC------------CCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhccc------------cchHHHhhhchh--------HHHHHHHHHHHH
Confidence 4555667788888999999888887762 111100 000000111111 123567788889
Q ss_pred hccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHH
Q 005454 471 GRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVA 546 (696)
Q Consensus 471 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 546 (696)
.+.|++++|+..+++. ...| +..+|..+..++...|++++|...++++++++|+++.+...+..++.+.+...+..
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999774 3355 67799999999999999999999999999999999999999999988777666543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=5.1e-06 Score=67.24 Aligned_cols=91 Identities=12% Similarity=0.001 Sum_probs=75.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCC--CchHHHHHHHH
Q 005454 464 ACMINLLGRSSDVDKAVDLIKSLP-HK-PNSLIWSTLLSVCAMKG---DIKHGEMAARHLFELEPIN--AGPYIMLSNMY 536 (696)
Q Consensus 464 ~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 536 (696)
..+++.+...+++++|.+.|++.. .. .+..++..+..++.+.+ ++++|..+++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 457788889999999999998753 33 46678888888887644 5567999999999998755 34789999999
Q ss_pred hhcCChhHHHHHHHHhhh
Q 005454 537 AACGRWEDVASIRSSMKS 554 (696)
Q Consensus 537 ~~~g~~~~A~~~~~~m~~ 554 (696)
.+.|++++|.+.++++.+
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 999999999999999977
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.05 E-value=1.6e-05 Score=68.90 Aligned_cols=64 Identities=6% Similarity=0.002 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+...|..+..++.+.|++++|...++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 3447778888899999999999999999999999999999999999999999999999998876
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=1.6e-05 Score=65.06 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=74.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch-------HHHHH
Q 005454 463 YACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-------YIMLS 533 (696)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~l~ 533 (696)
+-.+.+.|.+.|++++|++.|++.. ..| +..+|..+..+|...|+++.|...++++++++|.++.. |..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 3456777888888888888887642 234 57789999999999999999999999999999888764 55567
Q ss_pred HHHhhcCChhHHHHHHHHhhh
Q 005454 534 NMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 534 ~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.++...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 778888899999999977654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.03 E-value=0.00038 Score=64.83 Aligned_cols=230 Identities=12% Similarity=-0.000 Sum_probs=132.2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHh
Q 005454 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366 (696)
Q Consensus 287 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 366 (696)
|+..+..+...+.+.+++++|++.|++..+.| +...+..+...+..-. ++
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~---------------~~------------ 50 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQ---------------GV------------ 50 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS---------------SS------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC---------------Cc------------
Confidence 34455666666667777777777777766554 2222222222222200 00
Q ss_pred hHHhcCChHHHHHHHhcCCC-CCchHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhcCCc
Q 005454 367 MYCKCGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQ----NGQDLEALALYDKLLQENLKPDSFTFVSVLSA--CLHADL 439 (696)
Q Consensus 367 ~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~g~ 439 (696)
..+...|...+..... .+...+..+...+.. .++.+.|...+++..+.|.. ........... ......
T Consensus 51 ----~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~-~a~~~l~~~~~~~~~~~~~ 125 (265)
T d1ouva_ 51 ----EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA-EGCASLGGIYHDGKVVTRD 125 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHCSSSCCC
T ss_pred ----chhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhh-hHHHhhcccccCCCcccch
Confidence 2234444444443332 223333333333332 35666777777777765522 11111111111 122445
Q ss_pred HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHH
Q 005454 440 FERGQNHFDSISAVHGITPSLDHYACMINLLGR----SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHG 511 (696)
Q Consensus 440 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a 511 (696)
...+...+..... ..+...+..|...|.. ..+...+..+++......+......|...+.. ..|++.|
T Consensus 126 ~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A 201 (265)
T d1ouva_ 126 FKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEA 201 (265)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred hHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhh
Confidence 5666666665543 2445556666666654 45666777777665445566666666666654 5689999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhh----cCChhHHHHHHHHhhhCCC
Q 005454 512 EMAARHLFELEPINAGPYIMLSNMYAA----CGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 557 (696)
...++++.+.+ ++.++..|+.+|.. ..+.++|.+.+++..+.|.
T Consensus 202 ~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 202 LARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 99999998875 56788899999886 4489999999999887764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.2e-06 Score=91.13 Aligned_cols=94 Identities=14% Similarity=0.049 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
...+..+...+.+.|+.++|...++... .++ ..++..|...++..|++++|...++++++++|+++.+|..|+.+|..
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS 198 (497)
T ss_dssp -----------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4556666677777777777766554321 111 23566677777778888888888888888888888888888888888
Q ss_pred cCChhHHHHHHHHhhh
Q 005454 539 CGRWEDVASIRSSMKS 554 (696)
Q Consensus 539 ~g~~~~A~~~~~~m~~ 554 (696)
.|+..+|...+.+...
T Consensus 199 ~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIA 214 (497)
T ss_dssp TTCHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHh
Confidence 8888888877776654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=0.0068 Score=57.52 Aligned_cols=132 Identities=11% Similarity=-0.060 Sum_probs=76.6
Q ss_pred HHHHHHHHHccCChHHHHHHHccCCCCCcchHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHH
Q 005454 62 HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141 (696)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 141 (696)
-..+.+.|.+.|.++.|..+|..+.. |..++..|.+.++++.|.+++.+.. +..+|..+...+.+.....-|
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~la- 88 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLA- 88 (336)
T ss_dssp ------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHHHH-
Confidence 34456667777777777777765543 6677777777777777777776543 455777777777766554332
Q ss_pred HHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCC
Q 005454 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206 (696)
Q Consensus 142 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 206 (696)
.+.......+......++..+-..|.+++...+++..... -..+..+++.|+..|++.+.
T Consensus 89 ----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~ 148 (336)
T d1b89a_ 89 ----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP 148 (336)
T ss_dssp ----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH
T ss_pred ----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh
Confidence 2222233344455566777777777777777777766533 24456667777777777653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.91 E-value=3.4e-05 Score=66.54 Aligned_cols=62 Identities=6% Similarity=-0.020 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+|..+..++.+.|++++|...++++++++|.+..+|..++.+|...|++++|...+++..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35666777888899999999999999999999999999999999999999999999988765
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.91 E-value=5.5e-05 Score=65.22 Aligned_cols=93 Identities=9% Similarity=0.016 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLP-HK-PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
..|..+..+|.+.|++++|+..++... .. .+..+|..+..++...|++++|...++++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 356678888999999999999998743 23 4667999999999999999999999999999999999999999988877
Q ss_pred cCChhH-HHHHHHHhh
Q 005454 539 CGRWED-VASIRSSMK 553 (696)
Q Consensus 539 ~g~~~~-A~~~~~~m~ 553 (696)
.+...+ ..+++..|-
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 776543 455555553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.87 E-value=0.012 Score=55.74 Aligned_cols=286 Identities=11% Similarity=0.060 Sum_probs=163.7
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 005454 87 LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC 166 (696)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 166 (696)
.+|..-...+.+.+.+.|.++.|..+|..+. .|..++..+.+.++++.|.+++.+.. +..+|..+..+|
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l 79 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFAC 79 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHH
Confidence 3455556667888889999999999998764 57888899999999999999887653 456888888888
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHH
Q 005454 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCID 243 (696)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 243 (696)
.+......+ .+...+...++.....++..|-..|..++...+++.... .+...++.++..|++.+ +++-.+
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHH
Confidence 877665543 222333344666667889999999999999999987543 56667888999888864 344333
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCc
Q 005454 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323 (696)
Q Consensus 244 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 323 (696)
.++.. + +......+++.|-..+-+++ ++..|.+.|++++|+.+.-+ -.++.
T Consensus 154 ~l~~~---s---~~y~~~k~~~~c~~~~l~~e------------------lv~Ly~~~~~~~~A~~~~i~-----~~~~~ 204 (336)
T d1b89a_ 154 HLELF---W---SRVNIPKVLRAAEQAHLWAE------------------LVFLYDKYEEYDNAIITMMN-----HPTDA 204 (336)
T ss_dssp HHHHH---S---TTSCHHHHHHHHHTTTCHHH------------------HHHHHHHTTCHHHHHHHHHH-----STTTT
T ss_pred HHHhc---c---ccCCHHHHHHHHHHcCChHH------------------HHHHHHhcCCHHHHHHHHHH-----cchhh
Confidence 33322 1 12223334444544444444 45556667777777666543 23444
Q ss_pred cchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcC
Q 005454 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403 (696)
Q Consensus 324 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 403 (696)
.-....+..+.+..+.+...++....++.. +...+.|+......-+.....+.|++ .+
T Consensus 205 ~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~----p~~i~~lL~~v~~~~d~~r~V~~~~k------------------~~ 262 (336)
T d1b89a_ 205 WKEGQFKDIITKVANVELYYRAIQFYLEFK----PLLLNDLLMVLSPRLDHTRAVNYFSK------------------VK 262 (336)
T ss_dssp CCHHHHHHHHHHCSSTHHHHHHHHHHHHHC----GGGHHHHHHHHGGGCCHHHHHHHHHH------------------TT
T ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcC----HHHHHHHHHHhccCCCHHHHHHHHHh------------------cC
Confidence 445555666666666666666655555432 23334455555555555555544433 33
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHH
Q 005454 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443 (696)
Q Consensus 404 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 443 (696)
+..-....++.....| +....+++...|...++++.-
T Consensus 263 ~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l 299 (336)
T d1b89a_ 263 QLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQAL 299 (336)
T ss_dssp CTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHH
Confidence 3334444444433333 234455555555555554443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.79 E-value=5e-05 Score=65.56 Aligned_cols=131 Identities=15% Similarity=0.045 Sum_probs=93.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP-SLDHYACMINLL 470 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~ 470 (696)
+......+...|++++|++.|++.++. .+. ........+. ..+.| ....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~----------~~~~~~~~~~----------~~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEG----------SRAAAEDADG----------AKLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHHSCHHHH----------GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhh----------hhhhhhhHHH----------HHhChhhHHHHHHHHHHH
Confidence 445566677888888888888877641 000 0000000000 01122 345677888999
Q ss_pred hccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhH
Q 005454 471 GRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544 (696)
Q Consensus 471 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 544 (696)
.+.|++++|+..+++. ...| +..+|..+..++...|+++.|...++++++++|+++.++..|..++.+.....+
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874 4445 566999999999999999999999999999999999998888887765554444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.77 E-value=0.0054 Score=56.55 Aligned_cols=228 Identities=11% Similarity=-0.003 Sum_probs=119.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhccC-CChhHHHHHHHHHHh----cCChhHHHHHHHHhccCCCCCCccchHHHH
Q 005454 256 DEVTVSNILGACFQTGRIDDAGRLFHVIKE-KDNVCWTTMIVGYTQ----NGKEEDALILFNEMLSEDVRPDKFSISSVV 330 (696)
Q Consensus 256 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 330 (696)
|+..+..|...+...++.++|.+.|++..+ .+...+..|...|.. ..+...|...+......+.. .....+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---chhhccc
Confidence 345667777788899999999999998864 466666667777765 55777888877776655421 2222222
Q ss_pred HHHH----hhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChH
Q 005454 331 SSCA----KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406 (696)
Q Consensus 331 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 406 (696)
..+. ...+.+.+...+....+.|.. .....+...+.... .......
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~---------------------------~~~~~~~ 127 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGK---------------------------VVTRDFK 127 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCS---------------------------SSCCCHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCC---------------------------cccchhH
Confidence 2222 133455566666666655432 11122222222100 0112233
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc----cCCHHH
Q 005454 407 EALALYDKLLQENLKPDSFTFVSVLSACLH----ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR----SSDVDK 478 (696)
Q Consensus 407 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 478 (696)
.+...+...... .+...+..+...+.. ..+...+..+++...+. .+......+...|.. ..++++
T Consensus 128 ~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 128 KAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhh
Confidence 333333333331 222333333333322 23344444444444331 133333334433432 456777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCC
Q 005454 479 AVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHGEMAARHLFELEP 523 (696)
Q Consensus 479 A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 523 (696)
|..+|++....-++..+..|...|.. .+|.+.|.+.++++.+.++
T Consensus 201 A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 201 ALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 77777665444455566666666653 3477788888888877764
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.74 E-value=0.00017 Score=60.86 Aligned_cols=127 Identities=12% Similarity=-0.031 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 469 (696)
..+......+.+.|++.+|+..|++.+.. .|... ...-..... ... ......|..+...
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~---~~~-----~~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLD---KKK-----NIEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHH---HHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHH---hhh-----hHHHHHHhhHHHH
Confidence 35666777888899999999999888762 11110 000000000 000 0123467788899
Q ss_pred HhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 470 LGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 470 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
|.+.|++++|++.++.. ...| +..+|..+..++...|+++.|...++++++++|.++.+...+..+..
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999874 3345 66799999999999999999999999999999999988777766543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.62 E-value=0.00016 Score=57.16 Aligned_cols=88 Identities=8% Similarity=0.002 Sum_probs=51.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc
Q 005454 394 SMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472 (696)
Q Consensus 394 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 472 (696)
.+...+.+.|++++|+..|++.++. .|+ ..+|..+..++.+.|++++|+..|+...+. -+.+...+..+...|..
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHH
Confidence 3455566667777777777776663 343 456666666666666666666666666542 12234555555666666
Q ss_pred cCCHHHHHHHHHh
Q 005454 473 SSDVDKAVDLIKS 485 (696)
Q Consensus 473 ~g~~~~A~~~~~~ 485 (696)
.|++++|.+.+++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 6666666555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.45 E-value=0.00039 Score=60.09 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=79.5
Q ss_pred HHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCC-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 005454 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD-VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509 (696)
Q Consensus 431 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 509 (696)
.......|++++|.+.|.....-+.-.+-... ..+. ......-++. -....+..+..++...|+++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence 34567788999999888888753221110000 0011 0111111111 12346788899999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 510 HGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 510 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+|...++++++.+|.+...|..++.+|...|++++|++.|+++.+
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998854
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.00069 Score=54.86 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-----hHHHHHH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-----LDHYACM 466 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l 466 (696)
+..+...|.+.|++++|+..|++.++.+ +.+...+..+..++.+.|++++|+..++.+.+...-.+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3345566666677777777777766642 233556666666666777777777776665542110111 1234445
Q ss_pred HHHHhccCCHHHHHHHHHh
Q 005454 467 INLLGRSSDVDKAVDLIKS 485 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~ 485 (696)
.+.+...+++++|.+.+++
T Consensus 86 g~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 5555555555555555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.35 E-value=0.00036 Score=58.94 Aligned_cols=63 Identities=8% Similarity=-0.049 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN-----------AGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 492 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
...|+.+..++...|++++|...+++++++.|.. ..+|..++.+|...|++++|...+++..+
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888899988888888888765321 12578899999999999999999998765
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.00042 Score=52.69 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=52.5
Q ss_pred HHHHHHhccCCHHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 005454 465 CMINLLGRSSDVDKAVDLIKSLP--------HKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
.+...+.+.|++++|.+.|++.. ..++ ..++..|..++.+.|++++|...++++++++|+++.++..+...
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~ 89 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 45555566666666665554321 1233 45788999999999999999999999999999999888877543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.25 E-value=0.00012 Score=61.14 Aligned_cols=126 Identities=9% Similarity=0.063 Sum_probs=70.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCC----------cHHHHHHHHHHhHHhhCCCCC-hHHHHHH
Q 005454 399 YAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHAD----------LFERGQNHFDSISAVHGITPS-LDHYACM 466 (696)
Q Consensus 399 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g----------~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 466 (696)
|-+.+.+++|+..|+..++. .|+ ..++..+..++...+ .+++|+..|+++.+. .|+ ...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l---~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---cchhhHHHhhH
Confidence 44566677788888877773 444 455555555555332 334455555544431 222 3344444
Q ss_pred HHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHH
Q 005454 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVA 546 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 546 (696)
..+|...|++. ++.. ...++++.|.+.|+++++++|.+..++..|.... .|.
T Consensus 82 G~~y~~~g~~~------------~~~~---------~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~ 133 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAP 133 (145)
T ss_dssp HHHHHHHHHHC------------CCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THH
T ss_pred HHHHHHcccch------------hhHH---------HHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHH
Confidence 44443332211 0100 0112468899999999999999888777776654 455
Q ss_pred HHHHHhhhCCC
Q 005454 547 SIRSSMKSKNV 557 (696)
Q Consensus 547 ~~~~~m~~~~~ 557 (696)
+++.+..++|+
T Consensus 134 ~~~~e~~k~~~ 144 (145)
T d1zu2a1 134 QLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHHhc
Confidence 55555555553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=6.9e-05 Score=77.30 Aligned_cols=165 Identities=10% Similarity=-0.082 Sum_probs=84.9
Q ss_pred hhHHHHHHHHhccCCCCCCccchHHHHHHHH--hhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHH
Q 005454 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCA--KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381 (696)
Q Consensus 304 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 381 (696)
+..+.+.++...+....++.......+..+. ..+.++.+...+....+.. .++...+..+...+.+.|+.+.|...+
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 143 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQ 143 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence 3456666666655444444333222222211 1223333333333322222 234556667777788888888887776
Q ss_pred hcCCCCCc-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC
Q 005454 382 NMMPTRNV-VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPS 459 (696)
Q Consensus 382 ~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 459 (696)
.....++. .++..+...+...|++++|+..|++..+ +.|+. .+|+.+...+...|+..+|...|.+... --+|-
T Consensus 144 ~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--~~~~~ 219 (497)
T d1ya0a1 144 SSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA--VKFPF 219 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSBCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCC
Confidence 65443332 3677788888888999999999999888 45654 7888888888889999999988888875 34566
Q ss_pred hHHHHHHHHHHhcc
Q 005454 460 LDHYACMINLLGRS 473 (696)
Q Consensus 460 ~~~~~~li~~~~~~ 473 (696)
...+..|..+|.+.
T Consensus 220 ~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 220 PAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77788887777543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.13 E-value=0.00011 Score=61.21 Aligned_cols=49 Identities=8% Similarity=0.099 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC-----------hhHHHHHHHHhhh
Q 005454 506 GDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR-----------WEDVASIRSSMKS 554 (696)
Q Consensus 506 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~ 554 (696)
+.+++|...++++++++|+++.+|..++.+|...|+ +++|.+.|++..+
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 456789999999999999999999999999988764 5778888877765
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.0013 Score=49.75 Aligned_cols=61 Identities=13% Similarity=-0.003 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-------chHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINA-------GPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+-.+...+...|+++.|...+++++++.|.++ .++..|+.+|.+.|++++|...+++..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 344678889999999999999999999876543 4688999999999999999999999876
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.12 E-value=0.00063 Score=62.85 Aligned_cols=127 Identities=13% Similarity=0.038 Sum_probs=83.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHH
Q 005454 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDK 478 (696)
Q Consensus 400 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 478 (696)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|...|+...+. .|+ ...+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence 35688888888888888743 344577777888888888888888888887652 454 3444445555554444444
Q ss_pred HHHHHHh--CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHH
Q 005454 479 AVDLIKS--LPHKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 479 A~~~~~~--~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
+..-... ....|+ ...+......+...|+.++|...++++.+..|..+..+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 4333222 112233 234444556677889999999999999999988776543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.92 E-value=0.0044 Score=53.18 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHH----hhCCCCChHH
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA----VHGITPSLDH 462 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 462 (696)
..+..+...+...|++++|+..++++++.. +-+...|..++.++...|+..+|++.|+++.+ ..|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 456667778888888888888888888742 33457788888888888888888888887643 3588887654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.88 E-value=0.0036 Score=52.43 Aligned_cols=65 Identities=9% Similarity=-0.056 Sum_probs=42.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSL--------PHKPN-----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
.|+.+..+|...|++++|.+.+++. ...++ ..++..+..++...|++++|...|++++++.|...
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 3445555555555555555444332 11122 22567788899999999999999999999876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.41 E-value=0.00083 Score=62.00 Aligned_cols=120 Identities=13% Similarity=0.028 Sum_probs=84.6
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKPN-SLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a 511 (696)
..+.|++++|+..++...+ .-+.+...+..++.+|+..|++++|.+.++... ..|+ ...+..+...+...+..+.+
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 3467999999999999987 445567999999999999999999999998753 3565 34555555555444433332
Q ss_pred HHHHHHHHh-cCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 512 EMAARHLFE-LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 512 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
......... .+|++...+...+..+...|+.++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 222111111 22444455667788899999999999999988664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.93 E-value=0.23 Score=37.91 Aligned_cols=140 Identities=11% Similarity=0.087 Sum_probs=90.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHH
Q 005454 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479 (696)
Q Consensus 400 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 479 (696)
.-.|..++..++..+...+ .+..-|+-++--...+-+-+-..+.++.+-+.+.+.| ++++...
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHHH
Confidence 3456666677777666552 2344445454444444444555555555544333322 3344443
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCc
Q 005454 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558 (696)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 558 (696)
..-+-.+. .+....+.-+....++|+-+.-.++++.+++-+..+|.....++++|.+.|...++-+++.+.-++|++
T Consensus 76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33333332 233344556677888999999999999988888778899999999999999999999999999998874
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.31 E-value=0.14 Score=39.62 Aligned_cols=64 Identities=6% Similarity=-0.075 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcCCCCC-chHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 491 NSLIWSTLLSVCAMK---GDIKHGEMAARHLFELEPINA-GPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 491 ~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
...+.-....++.++ .+.++|..+++.+++.+|.+. ..+..|+-+|.+.|++++|.+.++++.+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 333444444444433 334566666666666666543 4556666666777777777776666655
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.09 E-value=0.25 Score=39.15 Aligned_cols=50 Identities=8% Similarity=0.003 Sum_probs=33.5
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh----cCChhHHHHHHHHhhhCCC
Q 005454 506 GDIKHGEMAARHLFELEPINAGPYIMLSNMYAA----CGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 506 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 557 (696)
.|.++|.+.++++.+.+ ++.+...|+.+|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 45667777777776654 45566677777765 3467777777777766654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.94 E-value=3.1 Score=40.46 Aligned_cols=111 Identities=8% Similarity=-0.036 Sum_probs=57.8
Q ss_pred HHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHh--CCCchHHHHHHHHHHHcCCCCCcch----HHHHHHHHHhcCCHH
Q 005454 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK--NGQPKKCIDLFQEMQLLGLNPDEVT----VSNILGACFQTGRID 274 (696)
Q Consensus 201 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~~~~~~g~~~ 274 (696)
..+.|+.+.+.++...+.+-....|-..-..-.. .....+...++ .+. |+... -...+..+.+.++++
T Consensus 16 a~~~~~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl---~~~---p~~P~~~~lr~~~l~~L~~~~~w~ 89 (450)
T d1qsaa1 16 AWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFV---RAN---PTLPPARTLQSRFVNELARREDWR 89 (450)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHH---HHC---TTCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHhhhcCCCCHHHHHHHHHHhccccCCHHHHHHHH---HHC---CCChhHHHHHHHHHHHHHhccCHH
Confidence 4466777777777777754223333322221111 12233333332 222 33222 223345567777777
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 005454 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318 (696)
Q Consensus 275 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 318 (696)
.....+..-+ .+...-.....+....|+.++|...+..+-..|
T Consensus 90 ~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 90 GLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 7665554322 234434456677778888888888887776543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.27 E-value=0.99 Score=35.37 Aligned_cols=111 Identities=11% Similarity=-0.057 Sum_probs=71.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc----cCCHHHH
Q 005454 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR----SSDVDKA 479 (696)
Q Consensus 404 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 479 (696)
+.++|+++|++..+.| .|.. ...|. .....+.++|..++++..+. | +......|..+|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g-~~~a--~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-EMFG--CLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTT-CTTH--HHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCC-Chhh--hhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 5677888888887776 2222 22222 23455778888888877652 3 34444555555543 4567888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCC
Q 005454 480 VDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHGEMAARHLFELEP 523 (696)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 523 (696)
.++|++.-..-++.....|...|.. ..|.++|.+.++++.+++.
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8888876444455555566655554 4688999999999887764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.00 E-value=3.1 Score=31.63 Aligned_cols=140 Identities=11% Similarity=0.015 Sum_probs=90.1
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHH
Q 005454 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377 (696)
Q Consensus 298 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 377 (696)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+...+++..+-+. .| ..+|+++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHH
Confidence 34567777777777776642 23344555554444444433333333332221 11 2456666666
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCC
Q 005454 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456 (696)
Q Consensus 378 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 456 (696)
...+-.+.. +....+.-+..+.+.|+-++-.++++.+.+.+ +|++.....+..||.+.|...++-+++.++.+. |+
T Consensus 76 v~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~ 151 (161)
T d1wy6a1 76 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK-GE 151 (161)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence 666655543 33455666788889999999999999987754 888888889999999999999999999888764 54
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.41 E-value=1.5 Score=31.64 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 404 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
+.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+.++.+ ..++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 45567777778878889999999999999999999999999999988764 3445567766654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.38 E-value=2 Score=32.82 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCC-CCC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHH
Q 005454 476 VDKAVDLIKSLP-HKP-NS-LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 476 ~~~A~~~~~~~~-~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
+++++.+++.+- ..| +. ..|-.|.-+|.+.|+++.|.+.++++++++|.+..+..
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 344555554432 123 22 35667778899999999999999999999998866543
|