Citrus Sinensis ID: 005474
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 695 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GWE0 | 702 | Pentatricopeptide repeat- | yes | no | 0.976 | 0.967 | 0.666 | 0.0 | |
| Q9LS25 | 711 | Pentatricopeptide repeat- | no | no | 0.874 | 0.855 | 0.401 | 1e-130 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.735 | 0.556 | 0.247 | 4e-44 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.456 | 0.387 | 0.269 | 8e-41 | |
| Q8GYP6 | 860 | Pentatricopeptide repeat- | no | no | 0.690 | 0.558 | 0.229 | 9e-38 | |
| Q9SSF9 | 855 | Pentatricopeptide repeat- | no | no | 0.690 | 0.561 | 0.231 | 3e-37 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.490 | 0.395 | 0.280 | 3e-36 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.470 | 0.437 | 0.295 | 4e-34 | |
| Q5G1S8 | 1440 | Pentatricopeptide repeat- | no | no | 0.723 | 0.349 | 0.217 | 6e-34 | |
| Q9FLD8 | 678 | Pentatricopeptide repeat- | no | no | 0.458 | 0.470 | 0.259 | 2e-33 |
| >sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/684 (66%), Positives = 553/684 (80%), Gaps = 5/684 (0%)
Query: 10 CSLFST-PKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG 68
C+L S PK R+F S+ + S F+S+ LQ VS+QE + + P
Sbjct: 21 CNLLSVYPKSTPRSFLSSYNPNSS-HFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIP 79
Query: 69 KTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGD 128
+ +S KSY+WVNPKSPRAS+L+ KSYD+RY+SL+KLA LD+C E DV V+ G
Sbjct: 80 EPTAS-KSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITGFGG 138
Query: 129 DFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLF 188
EQD V+ LNNMTNP+TA L L +K S+EVILYNVTMKVFRK +DL+K+E+LF
Sbjct: 139 KLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLF 198
Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
D+ML+RG+KPDN TF+T+ISCAR N +P +AVEWFE+M SFGC+PD +T ++MIDAYGRA
Sbjct: 199 DEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRA 258
Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
GNV+MA LYDRAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ Y
Sbjct: 259 GNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIY 318
Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
N L+D+MGRAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREMKE
Sbjct: 319 NRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKE 378
Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
KG+ L+V LYNTLL+MCAD Y DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+VS
Sbjct: 379 KGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVS 438
Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
EAEA +M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGCLL
Sbjct: 439 EAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLL 498
Query: 489 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDVKK 547
NVMTQTP EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DVKK
Sbjct: 499 NVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKK 558
Query: 548 AYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 607
AY NCLIDLCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTALH
Sbjct: 559 AYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALH 618
Query: 608 IWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 666
+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVG
Sbjct: 619 VWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVG 678
Query: 667 WFLTTEAAAKSWLESRSSLVSVPA 690
WFLTT AAK+WLESR S V A
Sbjct: 679 WFLTTSVAAKAWLESRRSAGGVSA 702
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Involved in chloroplast RNA processing. Could bind RNA. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 466 bits (1199), Expect = e-130, Method: Compositional matrix adjust.
Identities = 249/620 (40%), Positives = 374/620 (60%), Gaps = 12/620 (1%)
Query: 72 SSPKSYIWVNPKSPRASKL---KEK----SYDTRYNSLVKLAADLDSCSATEDDVF-SVL 123
S PKS +WVNP P+ S L ++K SY+ + L A L+S TE F S+L
Sbjct: 86 SKPKS-VWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLRAFALKLNSSIFTEKSEFLSLL 144
Query: 124 RCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDK 183
+ + +++LN++ + +K E I YNVTMK R R
Sbjct: 145 DEIPHPPNRDNALLVLNSLREWQKTHTFFNWVKSKSLFPMETIFYNVTMKSLRFGRQFQL 204
Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
E + +M+ GV+ DN+T+ST+I+CA+ NL NKA+EWFERM G PD +TYS+++D
Sbjct: 205 IEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILD 264
Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
Y ++G VE LY+RA W+ D AFS L K++G AG++DG V +EMK++ VKP
Sbjct: 265 VYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKP 324
Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
N++ YN LL+ MGRA +P ++++ EM + GL+PN T +L++ YG+AR+ D L ++
Sbjct: 325 NVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLW 384
Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
EMK K + LYNTLL MCAD+G +EA +F DMK S C+PD++++++M+ I
Sbjct: 385 EEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGS 444
Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
GK +A +F EML+AG + N+ T L+QC GKA+R DDVV + + G+ PDDR
Sbjct: 445 GGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRL 504
Query: 484 CGCLLNVMTQ-TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 542
CGCLL+VM E+ K++ C+E++N KL V L+++E+ K+E + N+
Sbjct: 505 CGCLLSVMALCESSEDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVINATQ 564
Query: 543 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAA 602
+ ++ +CNCLID+C N E A +LL LG +Y + +++ +WSL ++SLS+GAA
Sbjct: 565 VEARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAA 624
Query: 603 LTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSP 662
TAL W+ L+ ++ EE P L TG G H++S +GLA+ F HL++L+APF S
Sbjct: 625 ETALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFRQS- 682
Query: 663 DKVGWFLTTEAAAKSWLESR 682
D+ G F+ T+ SWLES+
Sbjct: 683 DRPGIFVATKEDLVSWLESK 702
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 145/587 (24%), Positives = 262/587 (44%), Gaps = 76/587 (12%)
Query: 165 VILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
++ YN + K + + + FD+M GV+PD +TF++L++ L A F
Sbjct: 303 LVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLF 362
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
+ M + + D +Y++++DA + G +++AF + A+ RI PN ++ST+I +
Sbjct: 363 DEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEIL--AQMPVKRIMPNVVSYSTVIDGFA 420
Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
AG FD LN++ EM+ +G+ + ++YN LL + R + I +EM G+ +
Sbjct: 421 KAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVV 480
Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
TY +LL YG+ ++ V+ EMK + + ++ Y+TL+ + G EA EIF +
Sbjct: 481 TYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREF 540
Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
KS+ + D +S++I G V A ++ +EM + G PN+ S+I +G++
Sbjct: 541 KSA-GLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSAT 599
Query: 462 TDDVV------------------------RALNRLPELGITPDDRFC----------GCL 487
D R + +L ++R C+
Sbjct: 600 MDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCI 659
Query: 488 LNVMTQTPK-----------------------EELGKLVECVEKSNSKL-GYVVKLLLEE 523
L V + + E+ L+E + ++K+ G V LL+ +
Sbjct: 660 LEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQ 719
Query: 524 QDIEGDFKKEATELF---NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT 580
++ + +A LF N + A+ N L D+ + A + G + +V+
Sbjct: 720 RE---NVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQVWE 776
Query: 581 DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHK--Y 638
++ S S L L +S GAA +H W+ ++ + G E P +L I TG GKH
Sbjct: 777 NVWSDS----CLDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKVV 832
Query: 639 SDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSL 685
D L E L+ ++APFH S +G F ++ + +WL ++L
Sbjct: 833 GDGALRRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESATL 879
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 173/353 (49%), Gaps = 36/353 (10%)
Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
S + + YN + V+ K +A ++ ++M+ G P VT+++LIS + + ++A+E
Sbjct: 311 SYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAME 370
Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
+M G PD TY++++ + RAG VE A +++ RN + + F+ IK+YG
Sbjct: 371 LKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYG 430
Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
G F + +++E+ G+ P+++T+N LL G+ +V ++KEM G P
Sbjct: 431 NRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERE 490
Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
T+ +L+ AY R E ++VYR M + G+ ++ YNT+LA A G +++ ++ +M
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550
Query: 402 KSSENCQPDSWTFSS-----------------------------------MITICSCRGK 426
+ C+P+ T+ S ++ +CS
Sbjct: 551 EDGR-CKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDL 609
Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
+ EAE F+E+ E GF P++ L S++ YG+ Q L+ + E G TP
Sbjct: 610 LPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTP 662
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 114/496 (22%), Positives = 224/496 (45%), Gaps = 16/496 (3%)
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
G K D T++T++ + + M GC P+ +TY+ +I +YGRA + A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
++++ + + D + TLI ++ AG D +++Y+ M+A G+ P+ TY+ +++
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478
Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
+G+A ++ EM D G +PN TY ++ + +AR ++ L +YR+M+ G +
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPD 538
Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
Y+ ++ + GY +EA +F +M+ +N PD + ++ + G V +A +
Sbjct: 539 KVTYSIVMEVLGHCGYLEEAEAVFTEMQQ-KNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597
Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ- 493
ML AG PN+ SL+ + + + + L + LG+ P + LL+ T
Sbjct: 598 QAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDG 657
Query: 494 TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKKEAT---ELFNSISKDVK 546
K ++G + + + G+ + L + G + + A +L +S ++ K
Sbjct: 658 RSKLDMGFCGQLMAST----GHPAHMFLLKMPAAGPDGENVRNHANNFLDLMHSEDRESK 713
Query: 547 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTA 605
+ + ++D E A + E+ V+ D ++ +S + W ++L +S G A+TA
Sbjct: 714 RGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTA 773
Query: 606 LHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELNAPFHDSPD 663
L + K + + P + I TG G+ + E L +PF
Sbjct: 774 LSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESG 833
Query: 664 KVGWFLTTEAAAKSWL 679
G F+ + WL
Sbjct: 834 NSGCFVGSGEPLNRWL 849
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/515 (23%), Positives = 219/515 (42%), Gaps = 35/515 (6%)
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
Y + + + + +L D+M+ G KP+ VT++ LI N +A+ F +M
Sbjct: 362 YTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQ 421
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
GC+PD +TY ++ID + +AG +++A +Y R + D +S +I G AG+
Sbjct: 422 EAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLP 481
Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
++ EM G PN++T+N ++ +A+ +Y++M + G P+ TY+ ++
Sbjct: 482 AAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVM 541
Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
G + E+ V+ EM+ K +Y L+ + G D+A++ ++ M +
Sbjct: 542 EVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQA-GL 600
Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
+P+ T +S+++ ++SEA + ML G P+L T L+ C A+ D+
Sbjct: 601 RPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFDM-- 658
Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE 527
FCG L+ V L K+ +V L
Sbjct: 659 --------------GFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFL------- 697
Query: 528 GDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRS 586
+ +S ++ K+ + ++D L E A + E+ VY D ++ +S
Sbjct: 698 --------DFMHSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKS 749
Query: 587 PTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLA 644
+ W ++L +S G A+ AL + K + + P + I TG G+ +
Sbjct: 750 YSYWLINLHVMSEGTAVIALSRTLAWFRKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVR 809
Query: 645 SVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 679
E L N PF G F+ + K+WL
Sbjct: 810 QAVEELLNIFNFPFFTENGNSGCFVGSGEPLKNWL 844
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 175/353 (49%), Gaps = 12/353 (3%)
Query: 134 DCVIILNNMTN-PDTAALA--LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDD 190
D ++N +++ P ++A L F NKL + + + K F D ++ RLF
Sbjct: 75 DVESLINKLSSLPPRGSIARCLDIFKNKLSLND----FALVFKEFAGRGDWQRSLRLFKY 130
Query: 191 MLDRGV--KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
M R + KP+ ++ +IS L +K +E F+ MPS G +Y+++I+AYGR
Sbjct: 131 M-QRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRN 189
Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNMIT 307
G E + L DR +NEK ++T+I G +++G L ++ EM+ G++P+++T
Sbjct: 190 GRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVT 249
Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
YN LL + + +++ M D G+ P+ TY+ L+ +G+ R E + EM
Sbjct: 250 YNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMA 309
Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
G +T YN LL A G EA +F M+++ C P++ T+S ++ + G+
Sbjct: 310 SGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA-GCTPNANTYSVLLNLFGQSGRY 368
Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
+ +F EM + +P+ LI+ +G+ +VV + + E I PD
Sbjct: 369 DDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPD 421
|
Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 167/332 (50%), Gaps = 5/332 (1%)
Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
+ S V YN+ ++ F ++D A LFD M +G P+ VT++TLI +
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIK 278
+ M G +P+ ++Y+ +I+ R G + E++F L + R + +D ++TLIK
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR-RGYSLDEVTYNTLIK 318
Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
Y GNF L ++ EM G+ P++ITY +L+ +M +A + +M GL P
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCP 378
Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
N TY +L+ + + Y + V REM + G SV YN L+ G ++A +
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVL 438
Query: 399 EDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
EDMK + PD ++S++++ CR V EA + EM+E G +P+ +SLIQ +
Sbjct: 439 EDMK-EKGLSPDVVSYSTVLS-GFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496
Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
+ +RT + + +G+ PD+ L+N
Sbjct: 497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALIN 528
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 121/556 (21%), Positives = 248/556 (44%), Gaps = 53/556 (9%)
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
+N M + +C ++A +F+ M+ G P + + L+ ++ + E +
Sbjct: 790 WNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQ 849
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD-------------------------RAR 262
G + M+DA+ RAGN+ +Y R R
Sbjct: 850 DMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVR 909
Query: 263 NEK----------WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
+ + ++++ +++++K+Y ++ + VY+ +K G++P+ TYN L+
Sbjct: 910 DAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLI 969
Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
R +RP + + ++M + GL P +TY SL+ A+G+ + E ++ E+ KG++
Sbjct: 970 IMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLK 1029
Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
L + Y+T++ + D G +A ++ + MK++ +P T ++ S G EAE
Sbjct: 1030 LDRSFYHTMMKISRDSGSDSKAEKLLQMMKNA-GIEPTLATMHLLMVSYSSSGNPQEAEK 1088
Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
+ + + + E +S+I Y +++ + + L + + G+ PD R C + +
Sbjct: 1089 VLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAAS 1148
Query: 493 -QTPKEELGKLVECVEKSNSKLGYVVKLL-----LEEQDIEGDFKKEATELFNSISKDVK 546
K E+ L++ +E L ++LL L +++G F+K SI +
Sbjct: 1149 FSKEKIEVMLLLKALEDIGFDLP--IRLLAGRPELLVSEVDGWFEK-----LKSIEDNAA 1201
Query: 547 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTA 605
+ N L++L L A + +LG+ +++ D+ + W + LS GAAL A
Sbjct: 1202 LNFVNALLNLLWAFELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALVA 1261
Query: 606 LHIWINDLSKA-LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 664
L +W++ + A LE E P + + TG +Y+ L ++ L E+ +PF +
Sbjct: 1262 LTLWLDHMQDASLEGYPESPKSVVLITGTA--EYNGISLDKTLKACLWEMGSPFLPCKTR 1319
Query: 665 VGWFLTTEAAAKSWLE 680
G + + + WL+
Sbjct: 1320 TGLLVAKAHSLRMWLK 1335
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 167/328 (50%), Gaps = 9/328 (2%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+++ YN + V+ K + +A L +M + GV P+ V++STL+S N+ +A+ F
Sbjct: 259 DLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVF 318
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
M C D T + MID YG+ V+ A L+ R K I+PN +++T++++YG
Sbjct: 319 AEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLR--KMDIEPNVVSYNTILRVYG 376
Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
A F ++++ M+ ++ N++TYN ++ G+ + + +EM G+ PN
Sbjct: 377 EAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAI 436
Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
TY++++ +G+A + +++++++ G+++ LY T++ VG A + ++
Sbjct: 437 TYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHEL 496
Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
K PD+ + ITI + G+ EA +F + E+G ++ V +I Y + QR
Sbjct: 497 K-----LPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQR 551
Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
+V+ ++ G PD +LN
Sbjct: 552 YVNVIEVFEKMRTAGYFPDSNVIAMVLN 579
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 695 | ||||||
| 359495626 | 701 | PREDICTED: pentatricopeptide repeat-cont | 0.981 | 0.972 | 0.732 | 0.0 | |
| 147841962 | 701 | hypothetical protein VITISV_001456 [Viti | 0.978 | 0.970 | 0.733 | 0.0 | |
| 449443502 | 704 | PREDICTED: pentatricopeptide repeat-cont | 0.979 | 0.967 | 0.686 | 0.0 | |
| 26452823 | 702 | putative salt-inducible protein [Arabido | 0.976 | 0.967 | 0.668 | 0.0 | |
| 224089803 | 700 | predicted protein [Populus trichocarpa] | 0.979 | 0.972 | 0.677 | 0.0 | |
| 9755842 | 702 | 67kD chloroplastic RNA-binding protein, | 0.976 | 0.967 | 0.666 | 0.0 | |
| 240255936 | 702 | pentatricopeptide repeat-containing prot | 0.976 | 0.967 | 0.666 | 0.0 | |
| 9755886 | 700 | 67kD chloroplastic RNA-binding protein, | 0.979 | 0.972 | 0.671 | 0.0 | |
| 9755888 | 700 | RSP67.2 [Raphanus sativus] | 0.988 | 0.981 | 0.661 | 0.0 | |
| 224137224 | 647 | predicted protein [Populus trichocarpa] | 0.930 | 1.0 | 0.695 | 0.0 |
| >gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1067 bits (2759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/707 (73%), Positives = 593/707 (83%), Gaps = 25/707 (3%)
Query: 1 MASNLCYSTCSL------------FSTPKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSL 48
MA +LC S SL FS R +FSF + +SLS +S+T LQ VSL
Sbjct: 1 MAYHLCSSPSSLCHDHHYLHNSLSFSRKSRLRSFNSFSF-KPNSLSLHSRTFLQITHVSL 59
Query: 49 -----QETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLV 103
QETQ ++ + + N Q P KT KSYIWVNP+SPRASKL++ SYD RY SLV
Sbjct: 60 EDPIPQETQKADAS-NPPNSQDPDRKT----KSYIWVNPRSPRASKLRQHSYDARYASLV 114
Query: 104 KLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASK 163
K+A LDSC ATE+DV VLRCLGD LEQD VI+LNNMTNP+TA LA +F +LK S+
Sbjct: 115 KIAESLDSCEATEEDVSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPSR 174
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
EVILYNVT+KVFRKCR+LD+AE+LFD+ML+RGVKPDN+TFST+ISCAR+++LPNKAVEWF
Sbjct: 175 EVILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWF 234
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
E+MP FGC PD +TYS+MIDAYGRAGNV+MA LYDRAR EKWRIDP FSTLI++YG +
Sbjct: 235 EKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMS 294
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
GNFDGCLNVYEEMKA+GVKPN++ YN LLD MGRAKRPWQ K IYKEMT+NGL P+W TY
Sbjct: 295 GNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTY 354
Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
A+LLRAYGRARY ED L VY+EMKEKG++LSV LYNTLLAMCADVGYT+EA IFEDMKS
Sbjct: 355 AALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKS 414
Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
S NC PDSWTFSS+ITI SC GKVSEAEAM N MLEAGFEPN+FVLTSLIQCYGKA RTD
Sbjct: 415 SGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTD 474
Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEE 523
+VVR +RL EL ITPDDRFCGC+LNVMTQ+PKEELGKL++C++K+N KLG VVKLLLEE
Sbjct: 475 EVVRTFDRLLELDITPDDRFCGCMLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEE 534
Query: 524 QDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ 583
Q+ EG F+KEA+ELF+SIS DVKKAYCNCLIDLCVNLNLLE AC+L +LGLTLE+Y DIQ
Sbjct: 535 QNGEGTFRKEASELFDSISADVKKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQ 594
Query: 584 SRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGL 643
S+SPTQWSLHLKSLSLGAALTALHIW+NDLSKA+E GEE P +LGINTGHGKHKYSDKGL
Sbjct: 595 SKSPTQWSLHLKSLSLGAALTALHIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGL 654
Query: 644 ASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSS--LVSV 688
ASVFESHLKELNAPFH++PDKVGWFLTT+ AA SWLESRS+ LV+V
Sbjct: 655 ASVFESHLKELNAPFHEAPDKVGWFLTTKVAATSWLESRSAPELVAV 701
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1056 bits (2731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/698 (73%), Positives = 590/698 (84%), Gaps = 18/698 (2%)
Query: 3 SNLCYSTCSLFSTPKLGR----RTF-TFSFQRDDSLSFYSKTSLQKRSVSL-----QETQ 52
S+LC+ L ++ R R+F +FSF + +SLS +S+T LQ VSL QETQ
Sbjct: 10 SSLCHDHHYLHNSLSFSRKSRLRSFNSFSF-KPNSLSLHSRTFLQITHVSLEDPIPQETQ 68
Query: 53 SSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSC 112
++ + + N Q P KT KSYIWVNP+SPRASKL++ SYD RY SLVK+A LDSC
Sbjct: 69 KADAS-NPPNSQDPDRKT----KSYIWVNPRSPRASKLRQHSYDARYASLVKIAESLDSC 123
Query: 113 SATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTM 172
ATE+DV VLRCLGD LEQD VI+LNNMTNP+TA LA +F +LK S+EVILYNVT+
Sbjct: 124 EATEEDVSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPSREVILYNVTL 183
Query: 173 KVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCD 232
KVFRKCR+LD AE+LFD+ML+RGVKPDN+TFST+ISCAR+++LPNKAVEWFE+MP FGC
Sbjct: 184 KVFRKCRNLDXAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEFGCH 243
Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
PD +TYS+MIDAYGRAGNV+MA LYDRAR EKWRIDP FSTLI++YG +GNFDGCLNV
Sbjct: 244 PDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNV 303
Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
YEEMKA+GVKPN++ YN LLD MGRAKRPWQ K IYKEMT+NGL +W TYA+LLRAYGR
Sbjct: 304 YEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGR 363
Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
ARY ED L VY+EMKEKG++LSV LYNTLLAMCADVGYT+EA IFEDMKSS NC PDSW
Sbjct: 364 ARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSW 423
Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
TFSS+ITI SC GKVSEAEAM N MLEAGFEPN+FVLTSLIQCYGKA RTD+VVR +RL
Sbjct: 424 TFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRL 483
Query: 473 PELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK 532
EL ITPDDRFCGC+LNVMTQ+PKEELGKL++C++K+N KLG VVKLLLEEQ+ EG F+K
Sbjct: 484 LELDITPDDRFCGCMLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEEQNGEGTFRK 543
Query: 533 EATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSL 592
EA+ELF+SIS DV KAYCNCLIDLCVNLNLLE AC+L +LGLTLE+Y DIQS+SPTQWSL
Sbjct: 544 EASELFDSISADVXKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSKSPTQWSL 603
Query: 593 HLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLK 652
HLKSLSLGAALTALHIW+NDLSKA+E GEE P +LGINTGHGKHKYSDKGLASVFESHLK
Sbjct: 604 HLKSLSLGAALTALHIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGLASVFESHLK 663
Query: 653 ELNAPFHDSPDKVGWFLTTEAAAKSWLESRSS--LVSV 688
ELNAPFH++PDKV WFLTT+ AA SWLESRS+ LV+V
Sbjct: 664 ELNAPFHEAPDKVXWFLTTKVAATSWLESRSAPELVAV 701
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Cucumis sativus] gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/701 (68%), Positives = 581/701 (82%), Gaps = 20/701 (2%)
Query: 1 MASNLCYSTCSLFSTPKLGRRTFTFSFQRDDSLS------------FYSKTSLQKRSVSL 48
MA LCYS + F+ + T QR +LS +SK LQ +VSL
Sbjct: 1 MAFQLCYSPPTFFTEHHFLSNSLTP--QRKTTLSNSSPLFKLSPIPRHSKPFLQITNVSL 58
Query: 49 QE-----TQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLV 103
QE TQ++ P+ + +YP K+GSS S +WVNP+SPRASKL+++SY+ RY SL+
Sbjct: 59 QEHAPQDTQNTIPSA-DEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLI 117
Query: 104 KLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASK 163
+++ LDS + E DV VL+ +G++ LE+D +++LNNM+N TA LAL YF + LK+SK
Sbjct: 118 RVSESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSK 177
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+ I YNVT+KVFRKCRD++ AE+LF++M++RGVKPDNVTFST+ISCAR+ +LP+KAVEWF
Sbjct: 178 QTIFYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFSTIISCARLCSLPSKAVEWF 237
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
E+MPSF C+PD +TYS+MIDAYGRAGNV+MAF LYDRAR E WRIDP FST+IK++G A
Sbjct: 238 EKMPSFDCNPDDVTYSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVA 297
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
GN+DGCLNVYEEMKAIG+KPN++ YN LLD MGRAKRPWQ+KTIYKEM NG SP+W TY
Sbjct: 298 GNYDGCLNVYEEMKAIGIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATY 357
Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
ASLLRAYGRARYGED L VY+EMKEKG+QL+V LYNTLLAMCADVGY +EA EIF+DMKS
Sbjct: 358 ASLLRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKS 417
Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
S C PDSWTFSSMITI SC GKVSEAE M N+M+EAGF+PN+FVLTSLIQCYGKA+R D
Sbjct: 418 SGTCSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVD 477
Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEE 523
DVVR N+L ELG+TPDDRFCGCLLNV+TQTPK ELGKL++CV ++N KLG+VV+LLL E
Sbjct: 478 DVVRTFNQLIELGLTPDDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGE 537
Query: 524 QDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ 583
QD EG+F+ EA+ELF+ +S DV+KAYCNCLIDLCVNL+LL+ AC+LL+LGLTL++Y D+Q
Sbjct: 538 QDKEGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQ 597
Query: 584 SRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGL 643
SRSPTQWSL+LK LSLGAALTALH+WI DL+K LESGEE PPLLGINTGHGKHKYSDKGL
Sbjct: 598 SRSPTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGL 657
Query: 644 ASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSS 684
ASVFESHLKELNAPFH++P+KVGWFLTT+ AAKSWLESRSS
Sbjct: 658 ASVFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSS 698
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|26452823|dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/684 (66%), Positives = 555/684 (81%), Gaps = 5/684 (0%)
Query: 10 CSLFST-PKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG 68
C+L S PK R+F S+ + S F+S+ LQ VS+QE + + P
Sbjct: 21 CNLLSVYPKSTPRSFLSSYNPNSS-HFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIP 79
Query: 69 KTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGD 128
+ +S KSY+WVNPKSPRAS+L+ KSYD+RY+SL+KLA LD+C E DV V+ G
Sbjct: 80 EPTAS-KSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITGFGG 138
Query: 129 DFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLF 188
EQD V+ LNNMTNP+TA L L +K S+EVILYNVTMKVFRK +DL+K+E+LF
Sbjct: 139 KLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLF 198
Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
D+ML+RG+KPDN TF+T+ISCAR N +P +AVEWFE+M SFGC+PD +T ++MIDAYGRA
Sbjct: 199 DEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRA 258
Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
GNV+MA LYDRAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ Y
Sbjct: 259 GNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIY 318
Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
N L+D+MGRAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREMKE
Sbjct: 319 NRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKE 378
Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
KG+ L+V LYNTLL+MCAD+GY DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+VS
Sbjct: 379 KGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVS 438
Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
EAEA +M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGCLL
Sbjct: 439 EAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLL 498
Query: 489 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDVKK 547
NVMTQTP EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DVKK
Sbjct: 499 NVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKK 558
Query: 548 AYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 607
AY NCLIDLCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTALH
Sbjct: 559 AYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALH 618
Query: 608 IWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 666
+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVG
Sbjct: 619 VWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVG 678
Query: 667 WFLTTEAAAKSWLESRSSLVSVPA 690
WFLTT AAK+WLESR S V A
Sbjct: 679 WFLTTSVAAKAWLESRRSAGGVSA 702
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa] gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 969 bits (2505), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/697 (67%), Positives = 564/697 (80%), Gaps = 16/697 (2%)
Query: 1 MASNLCYSTCSLF----STPKLGRRTFT--------FSFQRDDSLSFYSK-TSLQKRSVS 47
MA NLC S SL+ +TP R + + ++LS S+ TSLQ +VS
Sbjct: 1 MAYNLCSSPSSLYKPLCNTPSSSSRDSKSRNLNNNFYDSSKINTLSSQSRATSLQITNVS 60
Query: 48 LQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAA 107
LQ+ + P + + KTGSS KSYIWVNPKS RAS L++ SYD +Y SLV A
Sbjct: 61 LQDEEL--PRQETSKDSNFKEKTGSSSKSYIWVNPKSSRASILRKSSYDAKYTSLVNAAK 118
Query: 108 DLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVIL 167
L+SCS +DDVF+VL LEQD V+ILNNM+NPDTA LAL +F +LK ++EV++
Sbjct: 119 YLNSCSPNKDDVFNVLSKFDGKLLEQDAVVILNNMSNPDTALLALKFFQERLKFNREVVV 178
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
YNVT+KVFRK RDLDKAE+LFD+ML+RGVKPDN TFST+ISCAR+ NL +KAVEWFE+MP
Sbjct: 179 YNVTLKVFRKGRDLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADKAVEWFEKMP 238
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
SFG +PD +T S+MID+YGRAGNVE A LYDRAR +WR+D AFSTLI++Y AGNFD
Sbjct: 239 SFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKVAGNFD 298
Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
GCLNVYEEMKA+GVKPN++ YN LLD MGRAKRPWQVK Y+++ DNGLSP++ TYA+LL
Sbjct: 299 GCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAALL 358
Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
AYGRARYGED +YREMKEKG+ L+V LYN++LAMCAD+G+ D+A EIFEDMKSS
Sbjct: 359 HAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSS-GI 417
Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
+PDSWTFSSMITI SC GKVSEAE NEM EAGF+PN+F+LTSLIQCYGKAQR DDVV
Sbjct: 418 KPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDVVN 477
Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE 527
NR+ EL ITPDDRFCGCLLNVMTQTP EEL KLV+C E++N KLGYVVKLL+EEQD E
Sbjct: 478 TFNRIFELVITPDDRFCGCLLNVMTQTPNEELSKLVKCAERANPKLGYVVKLLVEEQDSE 537
Query: 528 GDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSP 587
G+FK EAT+LF+SIS +VKKAYCNCLIDLC+ LN+LE AC+LL+LGLTLE+YT+I SR+
Sbjct: 538 GNFKNEATDLFDSISTEVKKAYCNCLIDLCIKLNMLERACELLDLGLTLEIYTNIMSRTS 597
Query: 588 TQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVF 647
TQWSL+LKSLS GAA+TALHIW+NDLSK LE+GE+ PPLLGINTGHGKHKYS+KGLA+VF
Sbjct: 598 TQWSLNLKSLSPGAAMTALHIWMNDLSKVLEAGEQLPPLLGINTGHGKHKYSEKGLANVF 657
Query: 648 ESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSS 684
ES+LKELN+PFH++PDKVGWFLTT+ AA+SWLESR S
Sbjct: 658 ESYLKELNSPFHEAPDKVGWFLTTKVAAESWLESRKS 694
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9755842|emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 969 bits (2504), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/684 (66%), Positives = 554/684 (80%), Gaps = 5/684 (0%)
Query: 10 CSLFST-PKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG 68
C+L S PK R+F S+ + S F+S+ LQ VS+QE + + P
Sbjct: 21 CNLLSVYPKSTPRSFLSSYNPNSS-HFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIP 79
Query: 69 KTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGD 128
+ +S KSY+WVNPKSPRAS+L+ KSYD+RY+SL+KLA LD+C E DV V+ G
Sbjct: 80 EPTAS-KSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITGFGG 138
Query: 129 DFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLF 188
EQD V+ LNNMTNP+TA L L +K S+EVILYNVTMKVFRK +DL+K+E+LF
Sbjct: 139 KLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLF 198
Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
D+ML+RG+KPDN TF+T+ISCAR N +P +AVEWFE+M SFGC+PD +T ++MIDAYGRA
Sbjct: 199 DEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRA 258
Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
GNV+MA LYDRAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ Y
Sbjct: 259 GNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIY 318
Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
N L+D+MGRAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREMKE
Sbjct: 319 NRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKE 378
Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
KG+ L+V LYNTLL+MCAD+GY DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+VS
Sbjct: 379 KGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVS 438
Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
EAEA +M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGCLL
Sbjct: 439 EAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLL 498
Query: 489 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDVKK 547
NVMTQTP EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DVKK
Sbjct: 499 NVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKK 558
Query: 548 AYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 607
AY NCLIDLCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTALH
Sbjct: 559 AYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALH 618
Query: 608 IWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 666
+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVG
Sbjct: 619 VWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVG 678
Query: 667 WFLTTEAAAKSWLESRSSLVSVPA 690
WFLTT AAK+WLE R S V A
Sbjct: 679 WFLTTSVAAKAWLEFRRSAGGVSA 702
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240255936|ref|NP_193372.6| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|374095491|sp|Q8GWE0.3|PP314_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g16390, chloroplastic; AltName: Full=Chloroplastic RNA-binding protein P67; Flags: Precursor gi|332658341|gb|AEE83741.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/684 (66%), Positives = 553/684 (80%), Gaps = 5/684 (0%)
Query: 10 CSLFST-PKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG 68
C+L S PK R+F S+ + S F+S+ LQ VS+QE + + P
Sbjct: 21 CNLLSVYPKSTPRSFLSSYNPNSS-HFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIP 79
Query: 69 KTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGD 128
+ +S KSY+WVNPKSPRAS+L+ KSYD+RY+SL+KLA LD+C E DV V+ G
Sbjct: 80 EPTAS-KSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITGFGG 138
Query: 129 DFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLF 188
EQD V+ LNNMTNP+TA L L +K S+EVILYNVTMKVFRK +DL+K+E+LF
Sbjct: 139 KLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLF 198
Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
D+ML+RG+KPDN TF+T+ISCAR N +P +AVEWFE+M SFGC+PD +T ++MIDAYGRA
Sbjct: 199 DEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRA 258
Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
GNV+MA LYDRAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ Y
Sbjct: 259 GNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIY 318
Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
N L+D+MGRAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREMKE
Sbjct: 319 NRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKE 378
Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
KG+ L+V LYNTLL+MCAD Y DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+VS
Sbjct: 379 KGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVS 438
Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
EAEA +M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGCLL
Sbjct: 439 EAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLL 498
Query: 489 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDVKK 547
NVMTQTP EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DVKK
Sbjct: 499 NVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKK 558
Query: 548 AYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 607
AY NCLIDLCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTALH
Sbjct: 559 AYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALH 618
Query: 608 IWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 666
+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVG
Sbjct: 619 VWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVG 678
Query: 667 WFLTTEAAAKSWLESRSSLVSVPA 690
WFLTT AAK+WLESR S V A
Sbjct: 679 WFLTTSVAAKAWLESRRSAGGVSA 702
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9755886|emb|CAC01940.1| 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus] | Back alignment and taxonomy information |
|---|
Score = 966 bits (2496), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/687 (67%), Positives = 546/687 (79%), Gaps = 6/687 (0%)
Query: 7 YSTCSLFSTP-KLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQY 65
Y C+L S K R+F S+ +S F+S+T LQ VSLQE + P+
Sbjct: 17 YPLCNLLSVHHKSTPRSFVSSYN-PNSPPFHSRTLLQTSHVSLQEPLPQE--TQIEKPEL 73
Query: 66 PHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRC 125
S K Y WVNPKSPRAS+L+ KSYD+RY+SLVKLA LDSC A E DV V+
Sbjct: 74 EANPPASGSKRYAWVNPKSPRASQLRRKSYDSRYSSLVKLAESLDSCPANEADVSDVIAK 133
Query: 126 LGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAE 185
G EQD V+ LNNMTNP+TA L L LK ++EVILYNVTMKVFRK +DL+K+E
Sbjct: 134 FGSKLFEQDAVVTLNNMTNPETAPLVLNNLLETLKPTREVILYNVTMKVFRKSKDLEKSE 193
Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
+LFD+ML RGVKPDN TF+TLISCAR LP +AVEWFE+MPSFG +PD +T ++MIDAY
Sbjct: 194 KLFDEMLQRGVKPDNATFTTLISCARQCGLPKRAVEWFEKMPSFGLEPDNVTLAAMIDAY 253
Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
GRAGNVEMA LYDRAR EKWRIDP FSTLI++YG AGN+DGCLN+YEEMK++GVKPN+
Sbjct: 254 GRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNL 313
Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
+ YN LLD+MG+AKRPWQ I+K++ NG PNW+TYA+L+RAYGRARYGED L +YR+
Sbjct: 314 VIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQ 373
Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
MK KG++L+V LYNTLL+MCAD+GY DEAFEIF+DMKSS C+PDSWTFSS+IT+ SC G
Sbjct: 374 MKGKGLELTVILYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCG 433
Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 485
+VSEAEA EM EAGFEP LFVLTSLIQCYGKA++ DDVVR ++ ELGI PDDRFCG
Sbjct: 434 RVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQVLELGIEPDDRFCG 493
Query: 486 CLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKD 544
CLLNVMTQTP EE+GKL+ECVEK+ KLG VVK+L+EE++ EG KKEA+EL +SI D
Sbjct: 494 CLLNVMTQTPTEEIGKLIECVEKAKPKLGRVVKMLVEEENCEEGVLKKEASELIDSIGSD 553
Query: 545 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 604
V KAY NCLIDLCVNLN LE AC++L+LGL ++Y+ +QS+S TQWSLHLKSLSLGAALT
Sbjct: 554 VNKAYLNCLIDLCVNLNKLEKACEILQLGLEYDIYSGLQSKSATQWSLHLKSLSLGAALT 613
Query: 605 ALHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPD 663
ALH+W+NDLS+ AL SGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PD
Sbjct: 614 ALHVWMNDLSEAALTSGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPD 673
Query: 664 KVGWFLTTEAAAKSWLESRSSLVSVPA 690
KVGWFLTT AAK+WLESR S V A
Sbjct: 674 KVGWFLTTSVAAKTWLESRRSSAEVSA 700
|
Source: Raphanus sativus Species: Raphanus sativus Genus: Raphanus Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9755888|emb|CAC01941.1| RSP67.2 [Raphanus sativus] | Back alignment and taxonomy information |
|---|
Score = 966 bits (2496), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/703 (66%), Positives = 550/703 (78%), Gaps = 16/703 (2%)
Query: 1 MASNLCYSTCSLFSTP-----------KLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQ 49
M+ +LC S SL P K R+F S+ +S F+S+T LQ R VSLQ
Sbjct: 1 MSFHLCSSPSSLLHDPYPLCNLLSVHHKSTPRSFVSSYN-PNSPPFHSRTLLQTRHVSLQ 59
Query: 50 ETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADL 109
E + P+ S K Y WVNPKSPRAS+L+ KSYD+RY+SLVKLA L
Sbjct: 60 EPLPQE--TQIEKPELDANPPASGSKRYAWVNPKSPRASQLRRKSYDSRYSSLVKLAESL 117
Query: 110 DSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYN 169
DSC E DV V+ G EQD V+ LNNMTNP+TA L L LK ++EVILYN
Sbjct: 118 DSCPPNEADVSDVIAKFGSKLFEQDAVVALNNMTNPETAPLVLNNLLETLKPTREVILYN 177
Query: 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
VTMKVFRK +DL+K+E+LFD+ML RGVKPDN TF+TLISCAR LPN+AVEWFE+MPSF
Sbjct: 178 VTMKVFRKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPNRAVEWFEKMPSF 237
Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
G +PD +T ++MIDAYGRAGNVEMA LYDRAR EKWRIDP FSTLI++YG AGN+DGC
Sbjct: 238 GLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGC 297
Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
LN+YEEMK++GVKPN++ YN LLD+MG+AKRPWQ I+K++ NG PNW+TYA+L+RA
Sbjct: 298 LNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRA 357
Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
YGRARYGED L +YR+MK KGM+L+V LYNTLL+MCAD+GY DEAFEIF+DMKSS C+P
Sbjct: 358 YGRARYGEDALVIYRQMKGKGMELTVLLYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEP 417
Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
DSWTFSS+IT+ SC G+VSEAEA EM EAGFEP LFVLTSLIQCYGKA++ DDVVR
Sbjct: 418 DSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTF 477
Query: 470 NRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EG 528
++ ELGI PDDRFCGCLLNVMTQTPKEE+GKL+ CVEK+ KLG V K+L+EE++ EG
Sbjct: 478 EQVLELGIEPDDRFCGCLLNVMTQTPKEEIGKLIGCVEKAKPKLGRVEKMLVEEENCEEG 537
Query: 529 DFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPT 588
KKEA+EL +SI DV KAY NCLIDLCVNLN LE AC++L+LGL ++Y+ +QS+S T
Sbjct: 538 VLKKEASELIDSIGSDVNKAYLNCLIDLCVNLNKLEKACEILQLGLEYDIYSGLQSKSDT 597
Query: 589 QWSLHLKSLSLGAALTALHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVF 647
QWSLHLKSLSLGAALTALH+W+NDLS+ AL SGEEFPPLLGINTGHGKHKYSDKGLA+VF
Sbjct: 598 QWSLHLKSLSLGAALTALHVWMNDLSEAALTSGEEFPPLLGINTGHGKHKYSDKGLAAVF 657
Query: 648 ESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSLVSVPA 690
ESHLKELNAPFH++PDKVGWFLTT AAK+WLESR S V A
Sbjct: 658 ESHLKELNAPFHEAPDKVGWFLTTSVAAKTWLESRRSSAEVSA 700
|
Source: Raphanus sativus Species: Raphanus sativus Genus: Raphanus Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137224|ref|XP_002322504.1| predicted protein [Populus trichocarpa] gi|222867134|gb|EEF04265.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/650 (69%), Positives = 545/650 (83%), Gaps = 3/650 (0%)
Query: 41 LQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYN 100
LQ +VSLQ+ + P + + + K GSS KSYIWVNPKS +AS L++ SYD RY
Sbjct: 1 LQITNVSLQDQKI--PQQETSKDSNFNEKNGSSSKSYIWVNPKSSKASTLRKSSYDARYA 58
Query: 101 SLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLK 160
SL+K A L+SC+ +DDVF++L G+ E D V+ILNNM+NPDTA LAL +F +L+
Sbjct: 59 SLIKAAKSLNSCNPNKDDVFNILGEFGNKLFEHDAVVILNNMSNPDTALLALKFFRERLE 118
Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
++EV++YNVTMKV RKCRDL+K E+LFD+M++R VKPDNVTFST+ISCAR+ NL +KAV
Sbjct: 119 FNREVVVYNVTMKVLRKCRDLNKVEKLFDEMIERAVKPDNVTFSTIISCARLCNLADKAV 178
Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
EWFE+MPSFG DPD +T+S+MID+YGR GNVE A LYDRAR EKWR+D FSTLI++Y
Sbjct: 179 EWFEKMPSFGLDPDDVTFSTMIDSYGRVGNVEKALSLYDRARTEKWRLDTTTFSTLIRIY 238
Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
+GNFD CLNVYEEMKA+GVKPN++ YN LLD MGRA+RPWQ K Y+++ D+GLSP++
Sbjct: 239 KDSGNFDCCLNVYEEMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFYQDIIDSGLSPSY 298
Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
TYA+LLRAYGRARYGEDT+ +Y+EMKEK + L+V LYNT+LAMCAD+G+ DEA EIFED
Sbjct: 299 ATYAALLRAYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCADLGFVDEAIEIFED 358
Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
MK+S PDSWTFSSMIT+ SC GKVSEAE M NEM EAGF+PN+FVLTSLIQCYGKAQ
Sbjct: 359 MKNS-GISPDSWTFSSMITMSSCCGKVSEAENMLNEMFEAGFQPNIFVLTSLIQCYGKAQ 417
Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLL 520
R DDVV+ NRL EL ITPDDRFCGCLLNVMTQTP EELGKLV+CVE++N KLG+VVKLL
Sbjct: 418 RIDDVVKTFNRLYELLITPDDRFCGCLLNVMTQTPNEELGKLVDCVERANPKLGHVVKLL 477
Query: 521 LEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT 580
+EEQ EG+FKKEA +LF++IS +VKKAYCNCLIDLCV LN+LE AC+LL+ GLTL +YT
Sbjct: 478 VEEQGNEGNFKKEAADLFDNISTEVKKAYCNCLIDLCVKLNMLERACELLDHGLTLGIYT 537
Query: 581 DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD 640
DIQS++ TQWSL+LKSLS GAALTALH+WINDLSKALE+GE+ PPLLGINTGHGKHKYS+
Sbjct: 538 DIQSKTSTQWSLNLKSLSSGAALTALHVWINDLSKALEAGEQLPPLLGINTGHGKHKYSE 597
Query: 641 KGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSLVSVPA 690
KGLA+VFESHLKELNAPFH++PDKVGWFLTT+ AA+SWLESR +V A
Sbjct: 598 KGLANVFESHLKELNAPFHEAPDKVGWFLTTKVAAESWLESRKLADAVAA 647
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 695 | ||||||
| TAIR|locus:2130549 | 702 | SVR7 "suppressor of variegatio | 0.976 | 0.967 | 0.666 | 9.7e-254 | |
| TAIR|locus:2142320 | 711 | AT5G46580 "AT5G46580" [Arabido | 0.961 | 0.939 | 0.383 | 4.6e-121 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.575 | 0.488 | 0.248 | 2.1e-36 | |
| TAIR|locus:2027212 | 855 | AT1G74750 [Arabidopsis thalian | 0.694 | 0.564 | 0.233 | 3.7e-35 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.487 | 0.393 | 0.284 | 2.1e-33 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.618 | 0.678 | 0.253 | 1.9e-32 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.566 | 0.527 | 0.289 | 3.1e-32 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.584 | 0.703 | 0.254 | 1.2e-31 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.602 | 0.682 | 0.261 | 1.3e-31 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.581 | 0.641 | 0.257 | 2.6e-31 |
| TAIR|locus:2130549 SVR7 "suppressor of variegation 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2443 (865.0 bits), Expect = 9.7e-254, P = 9.7e-254
Identities = 456/684 (66%), Positives = 553/684 (80%)
Query: 10 CSLFST-PKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG 68
C+L S PK R+F S+ + S F+S+ LQ VS+QE + + P
Sbjct: 21 CNLLSVYPKSTPRSFLSSYNPNSS-HFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIP 79
Query: 69 KTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGD 128
+ +S KSY+WVNPKSPRAS+L+ KSYD+RY+SL+KLA LD+C E DV V+ G
Sbjct: 80 EPTAS-KSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITGFGG 138
Query: 129 DFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLF 188
EQD V+ LNNMTNP+TA L L +K S+EVILYNVTMKVFRK +DL+K+E+LF
Sbjct: 139 KLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLF 198
Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
D+ML+RG+KPDN TF+T+ISCAR N +P +AVEWFE+M SFGC+PD +T ++MIDAYGRA
Sbjct: 199 DEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRA 258
Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
GNV+MA LYDRAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ Y
Sbjct: 259 GNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIY 318
Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
N L+D+MGRAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREMKE
Sbjct: 319 NRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKE 378
Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
KG+ L+V LYNTLL+MCAD Y DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+VS
Sbjct: 379 KGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVS 438
Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
EAEA +M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGCLL
Sbjct: 439 EAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLL 498
Query: 489 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE-GDFKKEATELFNSISKDVKK 547
NVMTQTP EE+GKL+ CVEK+ KLG VVK+L+EEQ+ E G FKKEA+EL +SI DVKK
Sbjct: 499 NVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKK 558
Query: 548 AYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 607
AY NCLIDLCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTALH
Sbjct: 559 AYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALH 618
Query: 608 IWINDLSKA-LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 666
+W+NDLS+A LESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVG
Sbjct: 619 VWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVG 678
Query: 667 WFLTTEAAAKSWLESRSSLVSVPA 690
WFLTT AAK+WLESR S V A
Sbjct: 679 WFLTTSVAAKAWLESRRSAGGVSA 702
|
|
| TAIR|locus:2142320 AT5G46580 "AT5G46580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
Identities = 262/683 (38%), Positives = 396/683 (57%)
Query: 11 SLFSTPKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKT 70
SLF P L R++ + S KT L++ ++ + S K +T
Sbjct: 24 SLFLKPSLFRQSRSRKLNISCSSLKQPKT-LEEEPITTKTPSLSEQLKPLSATTLRQEQT 82
Query: 71 G--SSPKSYIWVNPKSPRASKL---KEK----SYDTRYNSLVKLAADLDSCSATEDDVF- 120
S PKS +WVNP P+ S L ++K SY+ + L A L+S TE F
Sbjct: 83 QILSKPKS-VWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLRAFALKLNSSIFTEKSEFL 141
Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD 180
S+L + + +++LN++ + +K E I YNVTMK R R
Sbjct: 142 SLLDEIPHPPNRDNALLVLNSLREWQKTHTFFNWVKSKSLFPMETIFYNVTMKSLRFGRQ 201
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
E + +M+ GV+ DN+T+ST+I+CA+ NL NKA+EWFERM G PD +TYS+
Sbjct: 202 FQLIEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSA 261
Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
++D Y ++G VE LY+RA W+ D AFS L K++G AG++DG V +EMK++
Sbjct: 262 ILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMD 321
Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
VKPN++ YN LL+ MGRA +P ++++ EM + GL+PN T +L++ YG+AR+ D L
Sbjct: 322 VKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDAL 381
Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
++ EMK K + LYNTLL MCAD+G +EA +F DMK S C+PD++++++M+ I
Sbjct: 382 QLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNI 441
Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
GK +A +F EML+AG + N+ T L+QC GKA+R DDVV + + G+ PD
Sbjct: 442 YGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPD 501
Query: 481 DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 539
DR CGCLL+VM E+ K++ C+E++N KL V L+++E+ K+E + N
Sbjct: 502 DRLCGCLLSVMALCESSEDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVIN 561
Query: 540 SISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSL 599
+ + ++ +CNCLID+C N E A +LL LG +Y + +++ +WSL ++SLS+
Sbjct: 562 ATQVEARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSV 621
Query: 600 GAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFH 659
GAA TAL W+ L+ ++ EE P L TG G H++S +GLA+ F HL++L+APF
Sbjct: 622 GAAETALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFR 680
Query: 660 DSPDKVGWFLTTEAAAKSWLESR 682
S D+ G F+ T+ SWLES+
Sbjct: 681 QS-DRPGIFVATKEDLVSWLESK 702
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 420 (152.9 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 101/406 (24%), Positives = 194/406 (47%)
Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
S + + YN + V+ K +A ++ ++M+ G P VT+++LIS + + ++A+E
Sbjct: 311 SYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAME 370
Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
+M G PD TY++++ + RAG VE A +++ RN + + F+ IK+YG
Sbjct: 371 LKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYG 430
Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
G F + +++E+ G+ P+++T+N LL G+ +V ++KEM G P
Sbjct: 431 NRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERE 490
Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
T+ +L+ AY R E ++VYR M + G+ ++ YNT+LA A G +++ ++ +M
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550
Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
+ C+P+ T+ S++ + ++ ++ E+ EP +L +L+ K
Sbjct: 551 EDGR-CKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDL 609
Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVM--TQTPKEELGKLVECVEKSNSKLGYVVKL 519
+ RA + L E G +PD ++++ Q + G L E+ +
Sbjct: 610 LPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNS 669
Query: 520 LLEEQDIEGDFKKEATELFNSISKDVKK---AYCNCLIDLCVNLNL 562
L+ DF K L ++K +K +Y + C N +
Sbjct: 670 LMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRM 715
|
|
| TAIR|locus:2027212 AT1G74750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 3.7e-35, Sum P(2) = 3.7e-35
Identities = 115/493 (23%), Positives = 226/493 (45%)
Query: 195 GVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
G K D T++T++ + R + + + M GC P+ +TY+ +I +YGRA ++
Sbjct: 354 GFKHDGHTYTTMVGNLGRAKQF-GEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKE 412
Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
A ++++ + D + TLI ++ AG D +++Y+ M+ G+ P+ TY+ +++
Sbjct: 413 AMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIIN 472
Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
+G+A ++ EM G +PN T+ ++ + +AR E L +YR+M+ G Q
Sbjct: 473 CLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQP 532
Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
Y+ ++ + G+ +EA +F +M+ +N PD + ++ + G V +A
Sbjct: 533 DKVTYSIVMEVLGHCGFLEEAEGVFAEMQR-KNWVPDEPVYGLLVDLWGKAGNVDKAWQW 591
Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
+ ML+AG PN+ SL+ + + R + L + LG+ P + LL+ T
Sbjct: 592 YQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTD 651
Query: 494 TPKE-ELGKLVECVEKSNSKLG-YVVKLLLEEQDIEG--DFKKEATELFNSISKDVKKAY 549
++G + + S +++K+ D + D + +S ++ K+
Sbjct: 652 ARSNFDMGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFMHSEDRESKRGL 711
Query: 550 CNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHI 608
+ ++D L E A + E+ VY D ++ +S + W ++L +S G A+ AL
Sbjct: 712 MDAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVMSEGTAVIALSR 771
Query: 609 WINDLSKALESGEEFPPLLGINTGHGKH-KYSDKGLA-SVFESHLKELNAPFHDSPDKVG 666
+ K + + P + I TG G+ + + + E L N PF G
Sbjct: 772 TLAWFRKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFNFPFFTENGNSG 831
Query: 667 WFLTTEAAAKSWL 679
F+ + K+WL
Sbjct: 832 CFVGSGEPLKNWL 844
|
|
| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 394 (143.8 bits), Expect = 2.1e-33, P = 2.1e-33
Identities = 101/355 (28%), Positives = 179/355 (50%)
Query: 134 DCVIILNNMTN-PDTAALA--LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDD 190
D ++N +++ P ++A L F NKL + +++ K F D ++ RLF
Sbjct: 75 DVESLINKLSSLPPRGSIARCLDIFKNKLSLNDFALVF----KEFAGRGDWQRSLRLFKY 130
Query: 191 MLDRGV--KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
M R + KP+ ++ +IS L +K +E F+ MPS G +Y+++I+AYGR
Sbjct: 131 M-QRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRN 189
Query: 249 GNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNM 305
G E + L DR +NEK I P+ ++T+I G +++G L ++ EM+ G++P++
Sbjct: 190 GRYETSLELLDRMKNEK--ISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDI 247
Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
+TYN LL + + +++ M D G+ P+ TY+ L+ +G+ R E + E
Sbjct: 248 VTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGE 307
Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
M G +T YN LL A G EA +F M+++ C P++ T+S ++ + G
Sbjct: 308 MASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA-GCTPNANTYSVLLNLFGQSG 366
Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
+ + +F EM + +P+ LI+ +G+ +VV + + E I PD
Sbjct: 367 RYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPD 421
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 1.9e-32, P = 1.9e-32
Identities = 113/445 (25%), Positives = 215/445 (48%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKC--RDLDKAERLFDDMLDR 194
I++N +LAL +K E + ++ + C + + A L D M++
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
G +PD +TF+TLI ++N ++AV +RM GC P+ +TY +++ + G+ ++A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
L ++ K D F+T+I + D LN+++EM+ G++PN++TY++L+
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304
Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
+ R + +M + ++PN T+ +L+ A+ + + +Y +M ++ +
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 364
Query: 375 VTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEA 432
+ YN+L+ C D+A ++FE M S + C PD T++++I C + +V +
Sbjct: 365 IFTYNSLVNGFCMH-DRLDKAKQMFEFMVSKD-CFPDVVTYNTLIKGFCKSK-RVEDGTE 421
Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
+F EM G + T+LIQ D+ + ++ G+ PD LL+ +
Sbjct: 422 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 481
Query: 493 QTPK-EELGKLVECVEKSNSKLG-YVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKK-- 547
K E+ ++ + ++KS KL Y+ ++E G + +LF S+S K VK
Sbjct: 482 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD-DGWDLFCSLSLKGVKPNV 540
Query: 548 -AYCNCLIDLCVNLNLLENACKLLE 571
Y + LC + LL+ A LL+
Sbjct: 541 VTYNTMISGLC-SKRLLQEAYALLK 564
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| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 119/411 (28%), Positives = 203/411 (49%)
Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNK 218
+ S V YN+ ++ F ++D A LFD M +G P+ VT++TLI ++ + +
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDD- 258
Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLI 277
+ M G +P+ ++Y+ +I+ R G + E++F L + R + +D ++TLI
Sbjct: 259 GFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRG-YSLDEVTYNTLI 317
Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
K Y GNF L ++ EM G+ P++ITY +L+ +M +A + +M GL
Sbjct: 318 KGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
PN TY +L+ + + Y + V REM + G SV YN L+ G ++A +
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAV 437
Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
EDMK + PD ++S++++ CR V EA + EM+E G +P+ +SLIQ +
Sbjct: 438 LEDMKE-KGLSPDVVSYSTVLS-GFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV--MTQTPKEELGKLVECVEKS--NSK 512
+ +RT + + +G+ PD+ L+N M ++ L E VEK
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 513 LGYVVKLL-LEEQDIEGDFKKEATELF--NSISKDVKKAYCNCLIDLCVNL 560
+ Y V + L +Q + K+ +LF S+ DV Y + LI+ C N+
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDV--TY-HTLIENCSNI 603
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| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 372 (136.0 bits), Expect = 1.2e-31, P = 1.2e-31
Identities = 106/417 (25%), Positives = 208/417 (49%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKC--RDLDKAERLFDDMLDR 194
I++N +LAL +K E + ++ + C + + A L D M++
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
G +PD +TF+TLI ++N ++AV +RM GC P+ +TY +++ + G++++A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
F L ++ K + +ST+I + D LN++ EM+ GV+PN+ITY++L+
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304
Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
+ +R + +M + ++PN T+ +L+ A+ + + +Y EM ++ +
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 364
Query: 375 VTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEA 432
+ Y++L+ C DEA +FE M S++C P+ T++++I C + ++ E
Sbjct: 365 IFTYSSLINGFCMH-DRLDEAKHMFELM-ISKDCFPNVVTYNTLINGFCKAK-RIDEGVE 421
Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
+F EM + G N T+LI + +A+ D+ ++ G+ P+ LL+ +
Sbjct: 422 LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLC 481
Query: 493 QTPKEELGKLV-ECVEKSNSKLG-YVVKLLLEEQDIEGDFKKEATELFNSIS-KDVK 546
+ K E +V E +++S + Y +++E G + + +LF S+S K VK
Sbjct: 482 KNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE-DGWDLFCSLSLKGVK 537
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| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 114/436 (26%), Positives = 204/436 (46%)
Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
ALA+ KL ++ N + F + +A L D M++ G +PD VTF+TL+
Sbjct: 119 ALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVH 178
Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
+N ++AV ERM GC PD +TY ++I+ + G ++A L ++ K
Sbjct: 179 GLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEA 238
Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
D +ST+I + D LN++ EM G++P++ TY++L+ + R +
Sbjct: 239 DVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLL 298
Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD 387
+M + ++PN T+ SL+ A+ + + ++ EM ++ + ++ YN+L+ C
Sbjct: 299 SDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 358
Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNL 446
DEA +IF M S + C PD T++++I C + KV + +F +M G N
Sbjct: 359 -DRLDEAQQIFTLMVSKD-CLPDVVTYNTLINGFCKAK-KVVDGMELFRDMSRRGLVGNT 415
Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV-EC 505
T+LI + +A D+ ++ G+ P+ LL+ + + K E +V E
Sbjct: 416 VTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEY 475
Query: 506 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYCNCLIDLCVNLNLLE 564
++KS + ++ E + ++ +LF S+S K VK D+ ++
Sbjct: 476 LQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKP-------DVIAYNTMIS 528
Query: 565 NACKLLELGLTLEVYT 580
CK GL E YT
Sbjct: 529 GFCKK---GLKEEAYT 541
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| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 108/419 (25%), Positives = 205/419 (48%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I++N +LAL +K E ++ N + F + A L M++
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
G +PD+ TF+TLI +N ++AV +RM GC PD +TY +++ + G++++A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240
Query: 255 FGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
L + E+ +I+P ++T+I N + LN++ EM G++PN++TYN+L+
Sbjct: 241 LSLLKKM--EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298
Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
+ R + +M + ++PN T+++L+ A+ + + +Y EM ++ +
Sbjct: 299 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 358
Query: 373 LSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEA 430
+ Y++L+ C DEA +FE M S++C P+ T++++I C + +V E
Sbjct: 359 PDIFTYSSLINGFCMH-DRLDEAKHMFELM-ISKDCFPNVVTYNTLIKGFCKAK-RVDEG 415
Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
+F EM + G N T+LI + +A+ D+ ++ G+ PD LL+
Sbjct: 416 MELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDG 475
Query: 491 MTQTPKEELGKLV-ECVEKSNSKLG-YVVKLLLEEQDIEGDFKKEATELFNSIS-KDVK 546
+ K E +V E +++S + Y +++E G + + +LF S+S K VK
Sbjct: 476 LCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVE-DGWDLFCSLSLKGVK 533
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GWE0 | PP314_ARATH | No assigned EC number | 0.6666 | 0.9769 | 0.9672 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00004057001 | SubName- Full=Chromosome undetermined scaffold_594, whole genome shotgun sequence; (701 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 695 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-32 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-17 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-13 | |
| smart00463 | 80 | smart00463, SMR, Small MutS-related domain | 7e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 8e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 8e-32
Identities = 124/520 (23%), Positives = 221/520 (42%), Gaps = 74/520 (14%)
Query: 29 RDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPR-A 87
R++ +FY + + +S L + S K + K S + A
Sbjct: 289 REELYTFYEEKQSRAKSSRLPNVKGLRKGVSSATNSLSLDKKNNGVKDAELPGQSSGQAA 348
Query: 88 SKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDT 147
S ++E++ YN V S D ++ R L D + +DC+ +L +M
Sbjct: 349 SDVEEENSLAAYNGGVSGKRK----SPEYIDAYN--RLLRDGRI-KDCIDLLEDMEKRGL 401
Query: 148 AALALTYFTNKLKASK------------EVIL------YNVTMKVFRKCRDLDKAERLFD 189
+ Y KA K ++I +N+ M V +D+D A R+
Sbjct: 402 LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR 461
Query: 190 DMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
+ + G+K D ++TLIS CA+ + + E F M + G + + T+ ++ID RA
Sbjct: 462 LVQEAGLKADCKLYTTLISTCAKSGKV-DAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520
Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG--VKPNMI 306
G V AFG Y R++ + D F+ LI G +G D +V EMKA + P+ I
Sbjct: 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580
Query: 307 TYNNLLDT------MGRAKRPWQ------VK-----------------------TIYKEM 331
T L+ + RAK +Q +K +IY +M
Sbjct: 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640
Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
G+ P+ +++L+ G A + + ++ +++G++L Y++L+ C++
Sbjct: 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700
Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLT 450
+A E++ED+KS + +P T +++IT C G + +A + +EM G PN +
Sbjct: 701 KKALELYEDIKSIK-LRPTVSTMNALITAL-CEGNQLPKALEVLSEMKRLGLCPNTITYS 758
Query: 451 SLIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCL 487
L+ ++R DD L+ L + GI P+ C C+
Sbjct: 759 ILLVA---SERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795
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Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 97.3 bits (242), Expect = 1e-20
Identities = 76/325 (23%), Positives = 131/325 (40%), Gaps = 55/325 (16%)
Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
+K + EV Y + + + D D A ++DDM +GVKPD V FS L+
Sbjct: 608 YNIKGTPEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV--------- 656
Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
D G AG+++ AF + AR + ++ ++S+L
Sbjct: 657 --------------------------DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690
Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
+ A N+ L +YE++K+I ++P + T N L+ + + + + EM GL
Sbjct: 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750
Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF- 395
PN TY+ LL A R + L + + KE G++ ++ + + +C A
Sbjct: 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALG 810
Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
E S + WT S + + + E + AG P + VL+ ++ C
Sbjct: 811 EPVVSFDSGRPQIENKWT-SWALMV-------------YRETISAGTLPTMEVLSQVLGC 856
Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
Q D + LGI+ D
Sbjct: 857 L---QLPHDATLRNRLIENLGISAD 878
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Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 3e-17
Identities = 90/381 (23%), Positives = 152/381 (39%), Gaps = 66/381 (17%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+V + N ++++ +AE++F M + D V+++ +IS N LP+KA+E +
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETY 377
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY---DRARNEKWRIDPNAFSTLIKLY 280
M PD +T +S++ A G++++ L+ +R + + NA LI++Y
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA---LIEMY 434
Query: 281 GTAGNFDGCLNVYEEM-----------------------------KAIG-VKPNMITYNN 310
D L V+ + + + +KPN +T
Sbjct: 435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIA 494
Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLS-----PNWNTYASLLRAY---GRARYGEDTLSV 362
L R K I+ + G+ PN +LL Y GR Y + +
Sbjct: 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN-----ALLDLYVRCGRMNYAWNQFNS 549
Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
+ + V +N LL G A E+F M S PD TF S++ CS
Sbjct: 550 HEK--------DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN-PDEVTFISLLCACS 600
Query: 423 CRGKVSEAEAMFNEM-LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
G V++ F+ M + PNL ++ G+A + + +N++P ITPD
Sbjct: 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDP 657
Query: 482 RFCGCLLNVMTQTPKEELGKL 502
G LLN ELG+L
Sbjct: 658 AVWGALLNACRIHRHVELGEL 678
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 2e-14
Identities = 72/296 (24%), Positives = 128/296 (43%), Gaps = 30/296 (10%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+V + N + ++ KC D+ A +FD M R D ++++ +IS N + +E F
Sbjct: 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELF 276
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
M DPD +T +S+I A G+ + ++ + +D + ++LI++Y +
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 284 GNFDGCLNVYEEM--KAIGVKPNMIT---YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
G++ V+ M K MI+ N L P + Y M + +SP
Sbjct: 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL---------PDKALETYALMEQDNVSP 387
Query: 339 NWNTYASLLRA---YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
+ T AS+L A G G + ++ + KG+ V + N L+ M + D+A
Sbjct: 388 DEITIASVLSACACLGDLDVG---VKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444
Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
E+F ++ + SWT S+I + EA F +ML +PN L +
Sbjct: 445 EVFHNIPEKDVI---SWT--SIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIA 494
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 5e-13
Identities = 74/324 (22%), Positives = 141/324 (43%), Gaps = 29/324 (8%)
Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF-STLISCARMNNLPNKA 219
+++ +NV + + K D+A L+ ML GV+PD TF L +C + +L +
Sbjct: 148 PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL-ARG 206
Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR-ARNEKWRIDPNAFSTLIK 278
E + FG + D +++I Y + G+V A ++DR R + I NA +I
Sbjct: 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD--CISWNA---MIS 261
Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL--------DTMGRAKRPWQVKTIYKE 330
Y G L ++ M+ + V P+++T +++ + +GR + VKT
Sbjct: 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT---- 317
Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
G + + + SL++ Y + V+ M+ K + +++ G
Sbjct: 318 ----GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGL 369
Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
D+A E + M+ +N PD T +S+++ C+C G + + G + V
Sbjct: 370 PDKALETYALME-QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428
Query: 451 SLIQCYGKAQRTDDVVRALNRLPE 474
+LI+ Y K + D + + +PE
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIPE 452
|
Length = 857 |
| >gnl|CDD|214676 smart00463, SMR, Small MutS-related domain | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 7e-12
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 589 QWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY-SDKGLASVF 647
+WSL L L++ ALTAL ++N+ L I TG GKH G+
Sbjct: 1 KWSLDLHGLTVEEALTALDKFLNNARLKG-----LEQKLVIITGKGKHSLGGKSGVKPAL 55
Query: 648 ESHLKELNAPFH 659
+ HL+ + F
Sbjct: 56 KEHLRVESFRFA 67
|
Length = 80 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 55/260 (21%), Positives = 110/260 (42%), Gaps = 43/260 (16%)
Query: 174 VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP 233
++ KC D++ A +FD M ++ V ++++++ ++ +A+ + M G
Sbjct: 268 MYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323
Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
D T+S MI + R +E A + + +D A + L+ LY G + NV+
Sbjct: 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383
Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
+ M + N+I++N L+ G R + +++ M G++PN T+ ++L A
Sbjct: 384 DRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA---- 435
Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
C G +++ +EIF+ M + +P +
Sbjct: 436 -------------------------------CRYSGLSEQGWEIFQSMSENHRIKPRAMH 464
Query: 414 FSSMITICSCRGKVSEAEAM 433
++ MI + G + EA AM
Sbjct: 465 YACMIELLGREGLLDEAYAM 484
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 6e-11
Identities = 68/283 (24%), Positives = 121/283 (42%), Gaps = 31/283 (10%)
Query: 202 TFSTLI-SCARMNNLPN-KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD 259
T+ L+ +C + ++ KAV W + S G +PD + ++ + + G + A L+D
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWH--VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182
Query: 260 R--ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG- 316
RN ++ T+I AGN+ ++ EM G T+ +L
Sbjct: 183 EMPERNLA------SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236
Query: 317 ----RAKRPWQVKTIYKEMTDNGLSPNWNTYAS--LLRAYGRARYGEDTLSVYREMKEKG 370
RA + + + + T+ S L+ Y + ED V+ M EK
Sbjct: 237 LGSARAGQQLHCCVLKTGVVGD-------TFVSCALIDMYSKCGDIEDARCVFDGMPEK- 288
Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
+ +N++LA A GY++EA ++ +M+ S D +TFS MI I S + A
Sbjct: 289 ---TTVAWNSMLAGYALHGYSEEALCLYYEMRDS-GVSIDQFTFSIMIRIFSRLALLEHA 344
Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
+ ++ GF ++ T+L+ Y K R +D +R+P
Sbjct: 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 9e-11
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC 209
V+ YN + + K +++A +LF++M RG+KP+ T+S LI
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 5e-10
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
VT YNTL+ G +EA ++F +MK +P+ +T+S +I
Sbjct: 3 VVT-YNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 2e-09
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
PD VT++TLI +A++ F M G P+ TYS +ID +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 7e-09
Identities = 70/368 (19%), Positives = 128/368 (34%), Gaps = 42/368 (11%)
Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
+ N + + KC L A RLFD+M +R + L+ +A F M
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGN----YREAFALFREM 215
Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
G D + T+ M+ A G+ L+ D LI +Y G+
Sbjct: 216 WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275
Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
+ V++ M + + +N++L + +Y EM D+G+S + T++ +
Sbjct: 276 EDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331
Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS--- 403
+R + R E + + G L + L+ + + G ++A +F+ M
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391
Query: 404 ---------------------------SENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
+E P+ TF ++++ C G + +F
Sbjct: 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451
Query: 437 MLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
M E +P +I+ G+ D+ + R P P LL
Sbjct: 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHK 508
Query: 496 KEELGKLV 503
ELG+L
Sbjct: 509 NLELGRLA 516
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 7e-09
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
P+++TYN L+D + + + ++ EM G+ PN TY+ L+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
++TLI Y G + L ++ EMK G+KPN+ TY+ L+D
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 3e-08
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 5/168 (2%)
Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
TY+ L++ K VK +Y + +G P+ +L + + D ++ EM
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
E+ ++ + T++ D G EAF +F +M + + TF M+ + G
Sbjct: 185 PER----NLASWGTIIGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGS 239
Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
+ + +L+ G + FV +LI Y K +D + +PE
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 1e-07
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
PD T++++I +GKV EA +FNEM + G +PN++ + LI K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF-STLISCARMNNLPNKAVE 221
K+V+ +N+ + + A LF+ M++ GV PD VTF S L +C+R + + + +E
Sbjct: 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR-SGMVTQGLE 610
Query: 222 WFERM-PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
+F M + P+ Y+ ++D GRAG + A+ K I P+
Sbjct: 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI-----NKMPITPDP 657
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 66/301 (21%), Positives = 123/301 (40%), Gaps = 27/301 (8%)
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
L++A +L + M + V D + L + EW +R G + SS
Sbjct: 67 LEQALKLLESMQELRVPVDEDAYVALF----------RLCEW-KRAVEEGSRVCSRALSS 115
Query: 241 MIDAYGRAGNVEMAFGLYDRARN--EKWRI-----DPNAFS--TLIKLYGTAGNFDGCLN 291
R GN ++ ++ R W + + + FS L+ Y AG FD L
Sbjct: 116 HPSLGVRLGNAMLS--MFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALC 173
Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
+Y M GV+P++ T+ +L T G + + ++ + G + + +L+ Y
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY- 232
Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
+ G D +S R + ++ + +N +++ + G E E+F M+ PD
Sbjct: 233 -VKCG-DVVSA-RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDL 288
Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
T +S+I+ C G M +++ GF ++ V SLIQ Y + + +R
Sbjct: 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348
Query: 472 L 472
+
Sbjct: 349 M 349
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
T++++I G+V EA +F EM E G EP+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 9e-06
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR 260
G PD +TY+++ID RAG V+ A L D
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
TY+++ID +AG VE A L+ + D
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.8 bits (104), Expect = 8e-05
Identities = 38/251 (15%), Positives = 72/251 (28%), Gaps = 5/251 (1%)
Query: 102 LVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKA 161
L++L +L ++ +L L + L + + A L
Sbjct: 32 LLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL 91
Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
+ ++A L + L PD + +A+E
Sbjct: 92 PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALE 151
Query: 222 WFERMPSFGCDPD--ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
+E+ + + A ++ G E A L ++A D A L L
Sbjct: 152 LYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL 211
Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
Y G ++ L YE+ + N NL + R + ++ + L P+
Sbjct: 212 YLKLGKYEEALEYYEKALEL-DPDNAEALYNLALLLLELGRYEEALEALEKALE--LDPD 268
Query: 340 WNTYASLLRAY 350
L
Sbjct: 269 LYNLGLALLLL 279
|
Length = 291 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 9e-05
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
TY +L+ Y + E+ L ++ EMK++G++ +V Y+ L+
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 9e-05
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
T++S+I+ GK+ EA +F EM E G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 1e-04
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
++ L+ AG+ D L V EEMKA G+KP
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD 199
+ YN + K +++A LF +M +RG++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKP 198
+ YN + K D D A + ++M G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 237 TYSSMIDAYGRAGNVEMAFGLYDR 260
TY+S+I Y +AG +E A L+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKE 25
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
TY +L+ +A E+ L +++EMKE+G++ V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
YNTL+ G +EA E+F++MK +PD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKER-GIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 201 VTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
VT++TLI +A+E F+ M G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 194 RGVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMP 227
+G+KPD VT++TLI C R + ++AVE + M
Sbjct: 1 KGLKPDVVTYNTLIDGLC-RAGRV-DEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 406 NCQPDSWTFSSMITICSCR-GKVSEAEAMFNEM 437
+PD T++++I CR G+V EA + +EM
Sbjct: 2 GLKPDVVTYNTLID-GLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSS 404
YN+L++ G +EA E+F++MK
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
+ TYN LL + +A P + +EM +GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 201 VTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
VT+++LIS +A+E F+ M G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.004
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
+ YN LL A G D A + E+MK+S
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKAS 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 695 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.61 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.56 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.55 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.49 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.49 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.49 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.48 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.46 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.46 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.44 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.41 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.4 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.37 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.31 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.27 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.26 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.25 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.25 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.25 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.24 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.24 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.23 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.2 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.2 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.18 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.17 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.15 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.14 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.12 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.09 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.09 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.08 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.06 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.02 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.98 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.94 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.93 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.93 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.91 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.9 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.9 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.86 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.79 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.79 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.79 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.76 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.73 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.72 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.69 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.67 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.66 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.65 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.63 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.63 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.63 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.61 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.6 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.5 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.48 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.47 | |
| smart00463 | 80 | SMR Small MutS-related domain. | 98.47 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.46 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.43 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.42 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.42 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.39 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.38 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.36 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.35 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.33 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.29 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.28 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.27 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.27 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.24 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.24 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.23 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.23 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.22 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.2 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.19 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.19 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.15 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.11 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.1 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.09 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.09 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.08 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.05 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.03 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.02 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.93 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.92 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.91 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.89 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.87 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.86 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.84 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.81 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.77 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.72 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.67 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.65 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.6 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.6 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.53 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.48 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.47 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.47 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.46 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.44 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.43 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.42 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.35 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.34 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.33 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.31 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.29 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.26 | |
| PF01713 | 83 | Smr: Smr domain; InterPro: IPR002625 This family i | 97.24 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.2 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.2 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.19 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.14 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.14 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.1 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.09 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.03 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.03 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.01 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.01 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.0 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.96 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.95 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.95 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.94 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.94 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.93 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.9 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.89 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.89 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.75 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.72 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.71 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.7 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.66 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.63 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.55 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.52 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.5 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.48 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.46 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.46 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.39 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.33 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.3 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.28 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.27 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.26 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.25 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.13 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.12 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.93 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.8 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.77 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.76 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.7 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.67 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.66 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.65 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.56 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.51 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.49 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.43 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.39 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.38 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.1 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.92 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.89 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.84 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.83 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.77 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.75 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.67 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.53 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.49 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.43 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.38 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.36 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.32 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.31 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.28 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.28 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.27 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.26 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.23 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.19 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.06 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.02 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.96 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.95 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.8 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.78 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.68 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.67 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.63 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.6 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.45 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.43 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.37 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.17 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.05 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.83 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.64 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.45 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.41 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.33 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.31 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.23 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.01 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.99 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.98 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.98 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.97 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.76 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.59 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.46 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.45 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.15 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.12 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.08 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.91 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.33 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.31 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.01 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.83 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.54 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.47 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 88.91 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.75 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 88.7 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.55 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 88.45 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.1 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.92 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.4 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.93 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.9 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.68 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.95 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 85.28 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.47 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.31 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.24 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.16 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.96 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 83.19 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 82.0 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.86 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.81 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 81.03 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.74 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 80.66 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.06 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-75 Score=660.12 Aligned_cols=587 Identities=18% Similarity=0.276 Sum_probs=515.1
Q ss_pred cccccccchhHHHHHHHhhccCCC---CHhhHHHHHHHhCC---------------CCCHHHHHHHHHh---hCChHHHH
Q 005474 91 KEKSYDTRYNSLVKLAADLDSCSA---TEDDVFSVLRCLGD---------------DFLEQDCVIILNN---MTNPDTAA 149 (695)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~l~~~~~---------------~~~~~~~~~~~~~---~~~~~~A~ 149 (695)
..+...++...+.+++..+..... +......++..+.. .+....+..++.. .++++.|.
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~ 457 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGAL 457 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHH
Confidence 444455677777777777764321 11111112222211 1333333344443 34589999
Q ss_pred HHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhC
Q 005474 150 LALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229 (695)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 229 (695)
++|+.|.+.+ +.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|+++|++|.+.
T Consensus 458 ~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 458 RVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 9999998865 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHh
Q 005474 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN--EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307 (695)
Q Consensus 230 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 307 (695)
|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 9999999999999999999999999999999986 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005474 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387 (695)
Q Consensus 308 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 387 (695)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 005474 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467 (695)
Q Consensus 388 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 467 (695)
.|++++|.++|++|.+.+. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 697 ~G~~eeA~~lf~eM~~~g~-~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKL-RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999886 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhc-----------------------CCH-HHHHHHHHHHHH--cCCChhHHHHHHh
Q 005474 468 ALNRLPELGITPDDRFCGCLLNVMTQ-----------------------TPK-EELGKLVECVEK--SNSKLGYVVKLLL 521 (695)
Q Consensus 468 ~~~~m~~~g~~pd~~~~~~ll~~~~~-----------------------~~~-~~a~~~~~~~~~--~~p~~~~~~~~l~ 521 (695)
+|++|.+.|+.||..+|++++..|.+ .+. ++|..+|++|.+ +.|+...+..+|
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL- 854 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVL- 854 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHH-
Confidence 99999999999999999999976542 012 578889999986 558877777777
Q ss_pred hhhcchhhHHHHHHHHHHhcccC---ccccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcccCccccCccceeeccccCC
Q 005474 522 EEQDIEGDFKKEATELFNSISKD---VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLS 598 (695)
Q Consensus 522 ~~~~~~g~~~~eA~~l~~~~~~~---~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~w~~~l~~~s 598 (695)
.++...+ ..+.+..+++.+... ++..+|++|+++|.+. .++|..++++|.+.|+.|++..+.. .|.+|+|.|+
T Consensus 855 ~cl~~~~-~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~~-~~~~d~~~~~ 930 (1060)
T PLN03218 855 GCLQLPH-DATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKKS-PIVIDAEELP 930 (1060)
T ss_pred HHhcccc-cHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcccccC-ceEEEcccCc
Confidence 4555555 578889999888544 5566999999998432 4689999999999999999977655 9999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCeeE-EEeecccccccc---------hhHHHHHHHHhhhcCCCCccCCCCcceE
Q 005474 599 LGAALTALHIWINDLSKALESGEEFPPLLG-INTGHGKHKYSD---------KGLASVFESHLKELNAPFHDSPDKVGWF 668 (695)
Q Consensus 599 ~G~~~~a~~~w~~~~~~~~~~g~~~p~~~~-i~~g~~~~~~~~---------~~~~~~i~~~l~~~~~pf~~~~~~~g~~ 668 (695)
.|+|++|+..|++.++.+.+.|.++|.... |.| .++|.+.+ ..+.++|.+||++++.||+.+.+. |||
T Consensus 931 ~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-g~~ 1008 (1060)
T PLN03218 931 VFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPT-EKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPYQGSESH-GKL 1008 (1060)
T ss_pred chhHHHHHHHHHHHHHHHHhccCcCCcceeeecc-ccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CeE
Confidence 999999999999999999999999999998 444 55555543 337899999999999999999999 999
Q ss_pred EEeHHHHHHHhccCCCCc
Q 005474 669 LTTEAAAKSWLESRSSLV 686 (695)
Q Consensus 669 ~~~~~~~~~wl~~~~~~~ 686 (695)
+++|.+++.||+....+.
T Consensus 1009 ~~~~~~~~~wl~~~~~~~ 1026 (1060)
T PLN03218 1009 RINGLSLRRWFQPKLKSP 1026 (1060)
T ss_pred EeccHHHHHHhcccCCCC
Confidence 999999999999987443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=555.83 Aligned_cols=476 Identities=20% Similarity=0.265 Sum_probs=302.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--------------------
Q 005474 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF-------------------- 203 (695)
Q Consensus 144 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-------------------- 203 (695)
+.+.|.++|+.+. .||+++||.+|.+|++.|++++|+++|++|...|+.||..||
T Consensus 136 ~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 136 ELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred ChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 3555555555542 356666666666666666666666666666655555554444
Q ss_pred ---------------HHHHHHHHHcCChhHHHHHHHhc-------------------------------hhCCCCCCHHH
Q 005474 204 ---------------STLISCARMNNLPNKAVEWFERM-------------------------------PSFGCDPDALT 237 (695)
Q Consensus 204 ---------------~~li~~~~~~g~~~~A~~~~~~m-------------------------------~~~g~~p~~~~ 237 (695)
|+||.+|++.|++++|.++|++| .+.|+.||..|
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~t 290 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 33333444444444444444444 44444444444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 005474 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317 (695)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 317 (695)
|+.+|.+|++.|+.+.|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEK 366 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHh
Confidence 444444444444444444444444444444445555555555555555555555555553 2455555555555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005474 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397 (695)
Q Consensus 318 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 397 (695)
.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.++..+|++||.+|++.|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555555566666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------------------------------
Q 005474 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF----------------------------------- 442 (695)
Q Consensus 398 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------------------------------- 442 (695)
|++|.+ +|..+|+.+|.+|++.|+.++|.++|++|.+ ++
T Consensus 447 f~~m~~-----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 447 FHNIPE-----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHhCCC-----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 666643 2333444444444444444444444444432 12
Q ss_pred ------------------------------CCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 005474 443 ------------------------------EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492 (695)
Q Consensus 443 ------------------------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~ 492 (695)
.+|..+|+++|.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 35667788999999999999999999999999999999999999999999
Q ss_pred cCCH-HHHHHHHHHHHH---cCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHH
Q 005474 493 QTPK-EELGKLVECVEK---SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 568 (695)
Q Consensus 493 ~~~~-~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ 568 (695)
+.|. +++.++|+.|.+ +.|+.. .++.+...+.+.| +++||.+++++|+..|+..+|++|+.+|..+|+.+.|+.
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~-~y~~lv~~l~r~G-~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLK-HYACVVDLLGRAG-KLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchH-HHHHHHHHHHhCC-CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 9999 999999999984 467632 2233333334447 899999999999999999999999999999999999998
Q ss_pred HHHHHHHcCcc--------cCccccCccceeeccccCChHHHHHHHHHHHHHHHHH-HhcC-CCCCCeeEEEeecccccc
Q 005474 569 LLELGLTLEVY--------TDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA-LESG-EEFPPLLGINTGHGKHKY 638 (695)
Q Consensus 569 ~l~~~~~~~~~--------~~~~~~~~~~w~~~l~~~s~G~~~~a~~~w~~~~~~~-~~~g-~~~p~~~~i~~g~~~~~~ 638 (695)
..++..+.... .|+|+ ..+.|. + ...+|+. .++| ++.|+++||+.+...|.|
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya-~~g~~~------------~-----a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f 740 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYA-DAGKWD------------E-----VARVRKTMRENGLTVDPGCSWVEVKGKVHAF 740 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHH-HCCChH------------H-----HHHHHHHHHHcCCCCCCCccEEEECCEEEEE
Confidence 88888764321 12222 234444 2 3344444 4567 999999999999999998
Q ss_pred cc----hhHHHHHHHHhhhc
Q 005474 639 SD----KGLASVFESHLKEL 654 (695)
Q Consensus 639 ~~----~~~~~~i~~~l~~~ 654 (695)
.. |+..+.|+..|.++
T Consensus 741 ~~~d~~h~~~~~i~~~l~~l 760 (857)
T PLN03077 741 LTDDESHPQIKEINTVLEGF 760 (857)
T ss_pred ecCCCCCcchHHHHHHHHHH
Confidence 64 77778888777654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-61 Score=540.18 Aligned_cols=487 Identities=16% Similarity=0.245 Sum_probs=436.7
Q ss_pred HHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 005474 139 LNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218 (695)
Q Consensus 139 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 218 (695)
+...+++++|+++|+++....+..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+||.++.+|++.|++++
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~ 176 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID 176 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHH
Confidence 34456689999999999987667899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 219 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+.+
T Consensus 177 A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 177 ARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred HHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 9999999974 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 005474 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378 (695)
Q Consensus 299 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 378 (695)
.|+.||..+|++||++|++.|++++|.++|++|.. +|.++|++||.+|++.|+.++|.++|++|.+.|+.||..+|
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999964 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005474 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458 (695)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 458 (695)
++++.+|++.|++++|.+++..|.+.|. .||..+|++||++|+++|++++|.++|++|.+ ||..+|++||.+|++
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHH
Confidence 9999999999999999999999999996 99999999999999999999999999999965 899999999999999
Q ss_pred cCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH---cCCC---hhHHHHHHhhhhcchhhHH
Q 005474 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK---SNSK---LGYVVKLLLEEQDIEGDFK 531 (695)
Q Consensus 459 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~---~~p~---~~~~~~~l~~~~~~~g~~~ 531 (695)
+|+.++|+++|++|.+.|+.||..||+.++.+|.+.|. +++.++|+.|.+ ..|+ +.++++.|++ .| .+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----~G-~~ 478 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----EG-LL 478 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----cC-CH
Confidence 99999999999999999999999999999999999999 999999999975 4565 3345555555 47 89
Q ss_pred HHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcccC-ccccCccceeecccc-CChHHHHHHHHHH
Q 005474 532 KEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKS-LSLGAALTALHIW 609 (695)
Q Consensus 532 ~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~~~~~~w~~~l~~-~s~G~~~~a~~~w 609 (695)
++|.+++++++..|+..+|++|+.+|..+|+++.|+++++++.+.+ |+ +.. +.+.+.. ...|..++|...+
T Consensus 479 ~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~--p~~~~~-----y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 479 DEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG--PEKLNN-----YVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC--CCCCcc-----hHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999987554 33 111 1111111 1346666665543
Q ss_pred HHHHHHHHhcC-CCCCCeeEEEeecccccccc----hhHHHHHHHHhhhc
Q 005474 610 INDLSKALESG-EEFPPLLGINTGHGKHKYSD----KGLASVFESHLKEL 654 (695)
Q Consensus 610 ~~~~~~~~~~g-~~~p~~~~i~~g~~~~~~~~----~~~~~~i~~~l~~~ 654 (695)
.. + ...| .+.|+..||+.+...|.|.. |+..+.|+..|.++
T Consensus 552 ~~-m---~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l 597 (697)
T PLN03081 552 ET-L---KRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDEL 597 (697)
T ss_pred HH-H---HHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHH
Confidence 32 2 3467 88999999999999999864 66666666665543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=522.58 Aligned_cols=450 Identities=17% Similarity=0.264 Sum_probs=372.3
Q ss_pred CCHHHHHHHHHhh---CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005474 130 FLEQDCVIILNNM---TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206 (695)
Q Consensus 130 ~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 206 (695)
......+.+++.+ +++++|+++|++|...+...++...++.++.+|.+.|.+++|..+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 3344455555655 568889999988887765667888888888888888888888888888863 788888888
Q ss_pred HHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 005474 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286 (695)
Q Consensus 207 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 286 (695)
|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 005474 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD--NGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364 (695)
Q Consensus 287 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 364 (695)
++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888875 5778888888888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 005474 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444 (695)
Q Consensus 365 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 444 (695)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|. .||..+|+.+|++|++.|++++|.++|++|.+.|+.|
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv-~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV-KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 888888888888888888888888888888888888888885 8888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH--cCCChhHHHHHHh
Q 005474 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK--SNSKLGYVVKLLL 521 (695)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~--~~p~~~~~~~~l~ 521 (695)
|..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+ ++|.++|+.|.. ..|+...+.. |.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s-LL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI-LL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HH
Confidence 8888888888888888888888888888888888888888888888888888 888888888875 4566544433 33
Q ss_pred hhhcchhhHHHHHHHHHHhcc---cCccccchHHHHHHHHh-----------------------cCCHHHHHHHHHHHHH
Q 005474 522 EEQDIEGDFKKEATELFNSIS---KDVKKAYCNCLIDLCVN-----------------------LNLLENACKLLELGLT 575 (695)
Q Consensus 522 ~~~~~~g~~~~eA~~l~~~~~---~~~~~~~~~~L~~~~~~-----------------------~g~~~~A~~~l~~~~~ 575 (695)
..+.+.| .+++|.++++.|. ..|+..+|++|++.|.+ .+..++|..+|++|.+
T Consensus 762 ~a~~k~G-~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 762 VASERKD-DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 5556667 7888888888773 45777788888876543 1234679999999999
Q ss_pred cCcccCccccC
Q 005474 576 LEVYTDIQSRS 586 (695)
Q Consensus 576 ~~~~~~~~~~~ 586 (695)
.|+.||..+..
T Consensus 841 ~Gi~Pd~~T~~ 851 (1060)
T PLN03218 841 AGTLPTMEVLS 851 (1060)
T ss_pred CCCCCCHHHHH
Confidence 99999976643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-56 Score=502.60 Aligned_cols=425 Identities=16% Similarity=0.222 Sum_probs=395.2
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 005474 140 NNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219 (695)
Q Consensus 140 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 219 (695)
...++.+.|.+++..+.+.+ +.||..+||.++.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|
T Consensus 134 ~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 134 IALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHH
Confidence 34455788999999988765 88999999999999999999999999999996 47999999999999999999999
Q ss_pred HHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005474 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 220 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 299 (695)
+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.+|..+|++||.+|++.|++++|.++|++|..
T Consensus 209 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~- 287 (697)
T PLN03081 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE- 287 (697)
T ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 005474 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379 (695)
Q Consensus 300 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 379 (695)
+|+++||+||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+
T Consensus 288 ---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~ 364 (697)
T PLN03081 288 ---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364 (697)
T ss_pred ---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005474 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459 (695)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 459 (695)
+||.+|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999996 5789999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHhhh-CCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHH
Q 005474 460 QRTDDVVRALNRLPE-LGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 537 (695)
Q Consensus 460 g~~~~A~~~~~~m~~-~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l 537 (695)
|.+++|.++|+.|.+ .|+.|+..+|+++++++.+.|. ++|.++++++. ..|+. .+++.|..++...| .++.|...
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p~~-~~~~~Ll~a~~~~g-~~~~a~~~ 516 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKPTV-NMWAALLTACRIHK-NLELGRLA 516 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCCCH-HHHHHHHHHHHHcC-CcHHHHHH
Confidence 999999999999985 7999999999999999999999 99999998763 45654 34566666666667 78999998
Q ss_pred HHhc-ccCcc-ccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcccC
Q 005474 538 FNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 581 (695)
Q Consensus 538 ~~~~-~~~~~-~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 581 (695)
++.+ ...|+ ...|..|+++|.+.|++++|.+++++|.+.|+...
T Consensus 517 ~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 517 AEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 8776 44454 55899999999999999999999999999987643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-54 Score=497.66 Aligned_cols=446 Identities=18% Similarity=0.211 Sum_probs=310.6
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 005474 142 MTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221 (695)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 221 (695)
....+.|.+++..+.+.. ..+++..+|++|..|++.|+++.|.++|++|. +||..+||++|.+|++.|++++|++
T Consensus 99 ~~~~~~a~~~~~~~~~~~-~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~ 173 (857)
T PLN03077 99 KRAVEEGSRVCSRALSSH-PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALC 173 (857)
T ss_pred CCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHH
Confidence 344778899999888765 67899999999999999999999999999997 4699999999999999999999999
Q ss_pred HHHhchhCCCCCCHHHHHHHHHHH-----------------------------------HhcCCHHHHHHHHHHHhhCCC
Q 005474 222 WFERMPSFGCDPDALTYSSMIDAY-----------------------------------GRAGNVEMAFGLYDRARNEKW 266 (695)
Q Consensus 222 ~~~~m~~~g~~p~~~~~~~li~~~-----------------------------------~~~g~~~~A~~~~~~~~~~g~ 266 (695)
+|++|...|+.||..||+.++++| ++.|++++|.++|++|.
T Consensus 174 ~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~---- 249 (857)
T PLN03077 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP---- 249 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----
Confidence 999999989988888776555554 55555555555555554
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005474 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346 (695)
Q Consensus 267 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 346 (695)
.+|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+|++|
T Consensus 250 ~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~L 329 (857)
T PLN03077 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329 (857)
T ss_pred CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHH
Confidence 24555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCC
Q 005474 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426 (695)
Q Consensus 347 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 426 (695)
|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|+++|++|.+.|. .||..||+.++.+|++.|+
T Consensus 330 i~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~-~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 330 IQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNV-SPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCCceeHHHHHHHHhccch
Confidence 6666666666666666666542 3556666666666666666666666666666664 6666666666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 005474 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 505 (695)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~ 505 (695)
+++|.++++.|.+.|+.|+..+|++||++|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|. ++|.++|++
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666642 344555555555555555 555555555
Q ss_pred HHH-cCCChhHHH----------------------------------HHHhhhhcchhhHHHHHHHHHHhcccCccccch
Q 005474 506 VEK-SNSKLGYVV----------------------------------KLLLEEQDIEGDFKKEATELFNSISKDVKKAYC 550 (695)
Q Consensus 506 ~~~-~~p~~~~~~----------------------------------~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~ 550 (695)
|.. ..|+...+. +.|...|.+.| .+++|.++|+.+ .++..+|
T Consensus 481 m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G-~~~~A~~~f~~~--~~d~~s~ 557 (857)
T PLN03077 481 MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG-RMNYAWNQFNSH--EKDVVSW 557 (857)
T ss_pred HHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC-CHHHHHHHHHhc--CCChhhH
Confidence 543 344443322 33445666667 788999998888 7788899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCcccCccccCccceeeccccC-ChHHHHHHHHHHHHHH
Q 005474 551 NCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSL-SLGAALTALHIWINDL 613 (695)
Q Consensus 551 ~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~w~~~l~~~-s~G~~~~a~~~w~~~~ 613 (695)
|+|+.+|+++|+.++|.++|++|.+.|+.||..+... -+... ..|.-++|...+....
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~-----ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS-----LLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH-----HHHHHhhcChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999766421 22222 3466666666654443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-25 Score=258.74 Aligned_cols=454 Identities=15% Similarity=0.079 Sum_probs=378.7
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 005474 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217 (695)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 217 (695)
.+...+++++|..+++.+... .+.+..+|+.+..++...|++++|.+.|+++.+.. +.+...+..+...+...|+++
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 334456689999999988775 34577789999999999999999999999998763 335667778888999999999
Q ss_pred HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005474 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297 (695)
Q Consensus 218 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 297 (695)
+|.+.|+++.+.+ +.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..|.+.|++++|.++++++.
T Consensus 517 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 517 DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998754 4478889999999999999999999999998765 5567788899999999999999999999998
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 005474 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377 (695)
Q Consensus 298 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 377 (695)
+.. +.+...|..+...+.+.|++++|...|+.+.+.. +.+...+..+...|.+.|++++|..+|+++.+.... +...
T Consensus 595 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 671 (899)
T TIGR02917 595 DAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEA 671 (899)
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHH
Confidence 764 4477889999999999999999999999998764 346778888999999999999999999999876433 6788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005474 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457 (695)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 457 (695)
+..++..+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|.+.|+++.+.+ |+..++..++.++.
T Consensus 672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHH
Confidence 9999999999999999999999998876 5788889999999999999999999999999854 55578888999999
Q ss_pred HcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHH
Q 005474 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536 (695)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~ 536 (695)
+.|++++|...++++.+.. ..+...+..+...+...|+ ++|.+.|+++.+..|++..+...+++.+...| . ++|.+
T Consensus 748 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~-~~A~~ 824 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK-D-PRALE 824 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-c-HHHHH
Confidence 9999999999999998653 2356678888888888998 99999999999999999999999999888888 4 77999
Q ss_pred HHHhc-ccCcc-ccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcc-cCccccCccceeeccccCChHHHHHHHHHHHHH
Q 005474 537 LFNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLEVY-TDIQSRSPTQWSLHLKSLSLGAALTALHIWIND 612 (695)
Q Consensus 537 l~~~~-~~~~~-~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~-~~~~~~~~~~w~~~l~~~s~G~~~~a~~~w~~~ 612 (695)
+++++ ...|+ ..+++.++.++...|++++|.++++++++.+.. +.++.. +-......|..++|...+.+.
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~------l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 825 YAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYH------LALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH------HHHHHHHcCCHHHHHHHHHHH
Confidence 98876 33343 447889999999999999999999999987643 122211 000112357777777766554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-24 Score=256.39 Aligned_cols=424 Identities=13% Similarity=0.068 Sum_probs=369.3
Q ss_pred HHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 005474 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216 (695)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 216 (695)
.++...+++++|.+.|+.+.... +.+...+..+...+...|++++|.+.|+.+.+.+ +.+..++..+...+.+.|+.
T Consensus 473 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 549 (899)
T TIGR02917 473 AIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNE 549 (899)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCH
Confidence 34555677999999999988753 3456778889999999999999999999998764 34778889999999999999
Q ss_pred hHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005474 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296 (695)
Q Consensus 217 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 296 (695)
++|..+|+++.+.+ +.+...+..++..|.+.|++++|..+++++.+.. +.+..+|..+...|.+.|++++|++.|+++
T Consensus 550 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 550 EEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627 (899)
T ss_pred HHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998754 4467788899999999999999999999998754 667889999999999999999999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 005474 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376 (695)
Q Consensus 297 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 376 (695)
.+.. +.+...+..+...+.+.|++++|..+++++.+.. +.+..++..++..+...|++++|.++++.+.+.+. .+..
T Consensus 628 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 704 (899)
T TIGR02917 628 LALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAAL 704 (899)
T ss_pred HHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChH
Confidence 8764 2367788899999999999999999999998764 34678899999999999999999999999988764 4677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005474 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456 (695)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 456 (695)
.+..+...+...|++++|...|+.+.... |+..++..+...+.+.|+.++|.+.++++.+.. +.+...+..+...|
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~ 780 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRA---PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 88889999999999999999999998854 555788889999999999999999999999854 34788999999999
Q ss_pred HHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHH
Q 005474 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536 (695)
Q Consensus 457 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~ 536 (695)
.+.|++++|...|+++.+.. ..+...+..+...+...|+.+|..+++++....|++..++..+|..+...| ..++|.+
T Consensus 781 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~ 858 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKG-EADRALP 858 (899)
T ss_pred HHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC-CHHHHHH
Confidence 99999999999999999763 236678888888888888877999999999999999999999999888888 8999999
Q ss_pred HHHhcc-cCc-cccchHHHHHHHHhcCCHHHHHHHHHHHH
Q 005474 537 LFNSIS-KDV-KKAYCNCLIDLCVNLNLLENACKLLELGL 574 (695)
Q Consensus 537 l~~~~~-~~~-~~~~~~~L~~~~~~~g~~~~A~~~l~~~~ 574 (695)
+++++- ..| +..++..+++++++.|+.++|.+++++++
T Consensus 859 ~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 859 LLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 998873 333 55688999999999999999999999876
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=199.94 Aligned_cols=311 Identities=15% Similarity=0.115 Sum_probs=238.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCC---HHHHHHHHHHHHhc
Q 005474 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD---ALTYSSMIDAYGRA 248 (695)
Q Consensus 172 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 248 (695)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|+++++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344667889999999999998763 23556788888888999999999999998887532221 25678888889999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCChHHH
Q 005474 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQV 324 (695)
Q Consensus 249 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a 324 (695)
|++++|..+|+++.+.. +.+..+++.++..|.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999988753 456778889999999999999999999998876533321 2345666777888899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 005474 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404 (695)
Q Consensus 325 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 404 (695)
.+.|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99988887754 23456777788888888899999988888887643333456777888888888898888888888774
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHhHHHHHHHHhhhCCCCCCH
Q 005474 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK---AQRTDDVVRALNRLPELGITPDD 481 (695)
Q Consensus 405 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~ 481 (695)
.|+...+..++..+.+.|++++|.++++++.+. .|+...++.++..+.. .|+.++++.++++|.+.++.|+.
T Consensus 279 ---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 ---YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred ---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 356666688888888888888888888888774 5888888888877664 55888888888888877777665
Q ss_pred HHHHHHHHHHhcCCH
Q 005474 482 RFCGCLLNVMTQTPK 496 (695)
Q Consensus 482 ~~~~~ll~~~~~~~~ 496 (695)
. ..|.++|.
T Consensus 354 ~------~~c~~cg~ 362 (389)
T PRK11788 354 R------YRCRNCGF 362 (389)
T ss_pred C------EECCCCCC
Confidence 5 34666654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-18 Score=202.03 Aligned_cols=429 Identities=12% Similarity=0.022 Sum_probs=268.0
Q ss_pred HHhhCChHHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 005474 139 LNNMTNPDTAALALTYFTNKLKASKEVI-LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217 (695)
Q Consensus 139 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 217 (695)
+...+++++|.+.|+.+.... +++.. ............|+.++|++.|+++.+.. +-+...+..+...+...|+.+
T Consensus 122 l~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHH
Confidence 344456777777777765542 22221 11111111223467777777777776652 224445555556666677777
Q ss_pred HHHHHHHhchhCCC------------------C--------------CCHHH---------------------HHHHHHH
Q 005474 218 KAVEWFERMPSFGC------------------D--------------PDALT---------------------YSSMIDA 244 (695)
Q Consensus 218 ~A~~~~~~m~~~g~------------------~--------------p~~~~---------------------~~~li~~ 244 (695)
+|++.|+++.+... . |+... .......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 77777666543210 0 00000 0011234
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHhHH------------HH
Q 005474 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-NMITYN------------NL 311 (695)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~------------~l 311 (695)
+...|++++|+..|++.++.. +-+..++..+...|.+.|++++|+..|++..+..... +...|. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 556677777777777777653 3466777777777777778888877777776653221 111111 12
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH-------------
Q 005474 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY------------- 378 (695)
Q Consensus 312 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~------------- 378 (695)
...+.+.|++++|...|+++.+... .+...+..+...|...|++++|++.|++..+.... +...+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHH
Confidence 3345677777777777777776532 34555666777777777777777777777654322 22222
Q ss_pred -----------------------------HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005474 379 -----------------------------NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429 (695)
Q Consensus 379 -----------------------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 429 (695)
..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Confidence 123344556788888888888887754 4466777788888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCC---------------------------------
Q 005474 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG--------------------------------- 476 (695)
Q Consensus 430 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------------------- 476 (695)
|...++++.+... .+...+..+...+...|+.++|+..++++....
T Consensus 514 A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 8888888876321 133333333333334444444444443321100
Q ss_pred -----CCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhccc-Ccc-c
Q 005474 477 -----ITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVK-K 547 (695)
Q Consensus 477 -----~~p-d~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~-~~~-~ 547 (695)
..| +...+..+...+.+.|+ ++|...++.+.+.+|++..+...++..+...| ..++|.+.++.+.. .|+ .
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g-~~~eA~~~l~~ll~~~p~~~ 671 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQG-DLAAARAQLAKLPATANDSL 671 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhccCCCCh
Confidence 122 33455566677778888 99999999999999999999999998888888 88999999987743 333 3
Q ss_pred cchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 548 AYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 548 ~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
.++..++.++...|++++|.+++++++...
T Consensus 672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 672 NTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 467788999999999999999999998754
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-18 Score=199.61 Aligned_cols=420 Identities=11% Similarity=0.022 Sum_probs=320.3
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHH------------H
Q 005474 140 NNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKP-DNVTFST------------L 206 (695)
Q Consensus 140 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~------------l 206 (695)
...+++++|+..|+.+.+.. +.+...+..+..++.+.|++++|+..|++..+..... +...|.. .
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 34566899999999888753 3467788889999999999999999999988753221 1111211 1
Q ss_pred HHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 005474 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286 (695)
Q Consensus 207 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 286 (695)
...+.+.|++++|++.|+++.+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...|. .++.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCH
Confidence 235678899999999999988753 3356778888899999999999999999998764 445667777777774 4678
Q ss_pred HHHHHHHHHHHHcCCC--------CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHH
Q 005474 287 DGCLNVYEEMKAIGVK--------PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358 (695)
Q Consensus 287 ~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 358 (695)
++|+.+++.+...... .....+..+...+...|++++|.+.|++..+... -+...+..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 9998888765432100 0122355567788899999999999999988643 256677788899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHH---------HHHHHHHHHHHcCCHHH
Q 005474 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW---------TFSSMITICSCRGKVSE 429 (695)
Q Consensus 359 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~---------~~~~li~~~~~~g~~~~ 429 (695)
|...|+++.+.... +...+..+...+...|+.++|+..++.+..... .++.. .+..+...+...|+.++
T Consensus 514 A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~-~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 514 ADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQW-NSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhc-ChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 99999999876433 444555555667788999999999998764331 22221 12345667889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 005474 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECVE 507 (695)
Q Consensus 430 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~-~~a~~~~~~~~ 507 (695)
|.++++. .+.+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|+ ++|.+.++.+.
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999872 2346677788899999999999999999999865 45 46678888889999999 99999999999
Q ss_pred HcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhccc-Ccc-c------cchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005474 508 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVK-K------AYCNCLIDLCVNLNLLENACKLLELGLT 575 (695)
Q Consensus 508 ~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~-~~~-~------~~~~~L~~~~~~~g~~~~A~~~l~~~~~ 575 (695)
+..|++..+...++..+...| ..++|.++++++.. .++ . .++..++.++...|+.++|...+++++.
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALG-DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999998888888888887778 88999999988732 221 1 2566678899999999999999999974
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-18 Score=184.24 Aligned_cols=298 Identities=16% Similarity=0.113 Sum_probs=242.9
Q ss_pred HHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcC
Q 005474 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID---PNAFSTLIKLYGTAG 284 (695)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g 284 (695)
..+...|++++|+..|+++.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++ ..++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34567899999999999999863 33567899999999999999999999999987542221 256788899999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCChHHHH
Q 005474 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW----NTYASLLRAYGRARYGEDTL 360 (695)
Q Consensus 285 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~ 360 (695)
++++|+.+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999998763 346788999999999999999999999999886543322 24556777889999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005474 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440 (695)
Q Consensus 361 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (695)
..|+++.+.... +...+..+...|.+.|++++|.++++++.+.+. .....+++.++.+|.+.|++++|.+.++++.+.
T Consensus 201 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 201 ALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDP-EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999876432 566778888999999999999999999987542 222467889999999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc---CCH-HHHHHHHHHHH----HcCCC
Q 005474 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ---TPK-EELGKLVECVE----KSNSK 512 (695)
Q Consensus 441 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~---~~~-~~a~~~~~~~~----~~~p~ 512 (695)
.|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|. +++..+++.+. +.+|+
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 466677788999999999999999999998865 7999999888876653 335 67777776665 34555
Q ss_pred h
Q 005474 513 L 513 (695)
Q Consensus 513 ~ 513 (695)
+
T Consensus 355 ~ 355 (389)
T PRK11788 355 Y 355 (389)
T ss_pred E
Confidence 3
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-18 Score=170.40 Aligned_cols=367 Identities=16% Similarity=0.132 Sum_probs=182.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHH-HHHH
Q 005474 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS-SMID 243 (695)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~ 243 (695)
..+|..+..++...|++++|+.+++.+++.. +-....|..+..++...|+.+.|.+.|.+..+ +.|+..... .+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhH
Confidence 4445555555555555555555555555441 11334455555555555555555555555544 234333222 2223
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCChH
Q 005474 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPW 322 (695)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 322 (695)
.....|++++|..-|.+.++.. +--.++|+.|...+-..|+...|++.|++.... .|+ ...|-.|...|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 3333455555555555555432 222344555555555555555555555555543 232 344555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 005474 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402 (695)
Q Consensus 323 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 402 (695)
.|...+.+...... -..+.+..+...|...|.+|.|++.|++.++.... -...|+.|..++-..|+..+|.+.|.+..
T Consensus 270 ~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 55555555444221 12344444445555555555555555555544222 23445555555555555555555555554
Q ss_pred hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCH
Q 005474 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481 (695)
Q Consensus 403 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 481 (695)
... .......+.|...|...|++++|..+|....+ +.|. ...++.|...|-+.|++++|+..+++.+ .+.|+.
T Consensus 348 ~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~f 421 (966)
T KOG4626|consen 348 RLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTF 421 (966)
T ss_pred HhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchH
Confidence 432 33344455555555555555555555555554 2232 2344555555555555555555555554 344543
Q ss_pred H-HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCcc
Q 005474 482 R-FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVK 546 (695)
Q Consensus 482 ~-~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~ 546 (695)
. .|+-+.+.|...|+ ..|.+.+..++.++|....+-+.|+..+-+.| ...+|++-++.. ..+||
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG-ni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG-NIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC-CcHHHHHHHHHHHccCCC
Confidence 2 34445555555555 55555555555555555555555555544444 445555544332 33444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-18 Score=170.76 Aligned_cols=415 Identities=14% Similarity=0.146 Sum_probs=303.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005474 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223 (695)
Q Consensus 144 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 223 (695)
++.+|.+-........ +-+....-.+-..+.+..+.+....--....+. .+.-..+|..+.+.+...|++++|+.++
T Consensus 63 d~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~y 139 (966)
T KOG4626|consen 63 DYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALALY 139 (966)
T ss_pred CHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 4555655555443332 112222333344556666666655443333333 2334678888888888888888998888
Q ss_pred HhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHcCC
Q 005474 224 ERMPSFGCDP-DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST-LIKLYGTAGNFDGCLNVYEEMKAIGV 301 (695)
Q Consensus 224 ~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~ 301 (695)
+.+.+. .| .+..|..+..++...|+.+.|.+.|.+.++. .|+.....+ +....-..|+.++|...|.+.++..
T Consensus 140 ~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q- 214 (966)
T KOG4626|consen 140 RAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ- 214 (966)
T ss_pred HHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-
Confidence 888874 34 5778888888888888888888888888765 455554433 4444555788888888888877753
Q ss_pred CCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 005474 302 KPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379 (695)
Q Consensus 302 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 379 (695)
|. .+.|+.|...+...|+...|+..|++..+. .|+ ...|-.|...|...+.++.|...|.+....... ..+.+.
T Consensus 215 -p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~g 290 (966)
T KOG4626|consen 215 -PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHG 290 (966)
T ss_pred -CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhcc
Confidence 33 567888888888888888888888888774 344 456777888888888888888888877665322 456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH
Q 005474 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGK 458 (695)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~ 458 (695)
.|...|-..|.++-|++.|++..+.. +.-...|+.|..++-..|++.+|.+.++..... .| -....+.|...|..
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYRE 366 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHH
Confidence 78888888888999998888888754 334677888888888889999998888888874 34 45677788888888
Q ss_pred cCCHhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHH
Q 005474 459 AQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536 (695)
Q Consensus 459 ~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~ 536 (695)
.|.+++|..+|....+ +.|+-. .++-|...|-+.|+ ++|...++.+.++.|.....++.+|..+-+.| ..++|.+
T Consensus 367 ~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g-~v~~A~q 443 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG-DVSAAIQ 443 (966)
T ss_pred hccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh-hHHHHHH
Confidence 8889999888888774 456543 57777777888888 88888888888888888888888888887777 7788888
Q ss_pred HHHhc-ccCccc-cchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 537 LFNSI-SKDVKK-AYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 537 l~~~~-~~~~~~-~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
.+.+. ...|.- ...+.|+.++...|+..+|+.-++.+++..
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 87654 445543 366788888888899888888888887653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-17 Score=180.72 Aligned_cols=399 Identities=13% Similarity=0.047 Sum_probs=294.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 005474 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245 (695)
Q Consensus 166 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 245 (695)
..+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34667788899999999999999998875 6788889889999999999999999999988753 23577889999999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------------------------
Q 005474 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-------------------------- 299 (695)
Q Consensus 246 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------------- 299 (695)
...|++++|+..|..+...+- .+......++..+.......++...++.-...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 999999999998887765431 22222222222222111112222221110000
Q ss_pred -CCCCCH-HhHHHHHHH---HHhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 005474 300 -GVKPNM-ITYNNLLDT---MGRAKRPWQVKTIYKEMTDNG-LSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372 (695)
Q Consensus 300 -g~~p~~-~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 372 (695)
...++. ..+..+... ....+++++|.+.|+...+.+ ..| +...+..+...+...|++++|+..|++..+....
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 363 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR 363 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 000000 000000000 122367899999999998764 223 4566788888899999999999999999886432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 005474 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTS 451 (695)
Q Consensus 373 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ 451 (695)
+...|..+...+...|++++|+..|+++.+.. +.+...|..+...+...|++++|...|++.++.. | +...+..
T Consensus 364 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~ 438 (615)
T TIGR00990 364 -VTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQ 438 (615)
T ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHH
Confidence 45678888899999999999999999998765 5678899999999999999999999999999853 4 5777888
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHH----HHHhh--h
Q 005474 452 LIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV----KLLLE--E 523 (695)
Q Consensus 452 li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~----~~l~~--~ 523 (695)
+...+.+.|++++|+..|++.++. .| +...+..+..++...|+ ++|.+.+++...++|+..... .+++. .
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 889999999999999999998854 45 45678888888899998 999999999999988743221 11111 1
Q ss_pred hcc-hhhHHHHHHHHHHhc-ccCcccc-chHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005474 524 QDI-EGDFKKEATELFNSI-SKDVKKA-YCNCLIDLCVNLNLLENACKLLELGLTL 576 (695)
Q Consensus 524 ~~~-~g~~~~eA~~l~~~~-~~~~~~~-~~~~L~~~~~~~g~~~~A~~~l~~~~~~ 576 (695)
+.. .| .+++|.+++++. ...|+.. .+..|+.++...|++++|.++|+++.+.
T Consensus 517 ~~~~~~-~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 517 LFQWKQ-DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 112 35 789999999775 4455544 6889999999999999999999998765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.5e-17 Score=179.42 Aligned_cols=393 Identities=9% Similarity=-0.017 Sum_probs=287.2
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 005474 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217 (695)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 217 (695)
.+...++++.|+..|+.+... .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|...|+++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 334456799999999998764 5778889999999999999999999999998763 235667888888999999999
Q ss_pred HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---------------------C----CCCCHHH
Q 005474 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE---------------------K----WRIDPNA 272 (695)
Q Consensus 218 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------g----~~~~~~~ 272 (695)
+|+..|......+-..+.. ...++.-+........+...++.-... + ...+...
T Consensus 212 eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 9999887765432111222 222222211111112222221110000 0 0000000
Q ss_pred HHHHHHHH------HHcCChHHHHHHHHHHHHcC-CCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005474 273 FSTLIKLY------GTAGNFDGCLNVYEEMKAIG-VKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344 (695)
Q Consensus 273 ~~~li~~~------~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 344 (695)
-..++..+ ...+++++|++.|++..+.+ ..| +...|+.+...+...|++++|...+++..+... .+...|.
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~ 369 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYI 369 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHH
Confidence 00011111 12368999999999998764 223 456788888889999999999999999988542 2456788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHc
Q 005474 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424 (695)
Q Consensus 345 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 424 (695)
.+...+...|++++|...|++..+.... +...|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHC
Confidence 8899999999999999999999887533 67788889999999999999999999998865 56778888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH------HHHHHHHHHhcCCH-H
Q 005474 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR------FCGCLLNVMTQTPK-E 497 (695)
Q Consensus 425 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~------~~~~ll~~~~~~~~-~ 497 (695)
|++++|...|++..+.. +.+...|+.+...+...|++++|+..|++..+.....+.. .++..+..+...|+ +
T Consensus 447 g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 447 GSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 99999999999998742 2367889999999999999999999999988543221111 12222222333567 9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc
Q 005474 498 ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 541 (695)
Q Consensus 498 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~ 541 (695)
+|.++++++..++|+...+...+|..+...| ..++|.+++++.
T Consensus 526 eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g-~~~eAi~~~e~A 568 (615)
T TIGR00990 526 EAENLCEKALIIDPECDIAVATMAQLLLQQG-DVDEALKLFERA 568 (615)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHH
Confidence 9999999999999999888889999998888 899999998775
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-17 Score=179.70 Aligned_cols=320 Identities=8% Similarity=-0.024 Sum_probs=176.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 005474 143 TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222 (695)
Q Consensus 143 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 222 (695)
+++.+|+.+++...... +.+...+..++.++...|++++|+..|+.+.+.. +.+...+..+...+...|++++|++.
T Consensus 56 g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 56 DETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred CCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 44666666666665543 2223333444445555666666666666666542 22334455555566666666666666
Q ss_pred HHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005474 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302 (695)
Q Consensus 223 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 302 (695)
|+++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+ ..+...|++++|...++.+.+....
T Consensus 133 l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~ 209 (656)
T PRK15174 133 AEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFAL 209 (656)
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 66665531 2235555666666666666666666666655443 1222233222 2355666666666666666554322
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHH----HHHHHHHHHHcCCCCCHHHH
Q 005474 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED----TLSVYREMKEKGMQLSVTLY 378 (695)
Q Consensus 303 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~ 378 (695)
++...+..+...+.+.|++++|...++++.+.. +.+...+..+...|.+.|++++ |...|++..+.... +...+
T Consensus 210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~ 287 (656)
T PRK15174 210 ERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIV 287 (656)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHH
Confidence 233334444555666666666666666666543 2244555556666666666654 56666666554332 45555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 005474 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL-FVLTSLIQCYG 457 (695)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~ 457 (695)
..+...+.+.|++++|+..+++..+.. +.+...+..+...|.+.|++++|.+.|+++.+. .|+. ..+..+..++.
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~ 363 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALL 363 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 666666666666666666666666543 334455555666666666666666666666653 2332 22333344566
Q ss_pred HcCCHhHHHHHHHHhhh
Q 005474 458 KAQRTDDVVRALNRLPE 474 (695)
Q Consensus 458 ~~g~~~~A~~~~~~m~~ 474 (695)
..|+.++|+..|++..+
T Consensus 364 ~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 364 QAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666666666666553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-15 Score=170.43 Aligned_cols=418 Identities=9% Similarity=0.023 Sum_probs=279.6
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHH
Q 005474 142 MTNPDTAALALTYFTNKLKASKEVILYNVT-MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM-NNLPNKA 219 (695)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A 219 (695)
+.++++|.+.++ .+ .....|+..+.... ..+|.+.|++++|++++.++.+.+. .+......|-.+|.. .++ +++
T Consensus 160 y~q~eqAl~AL~-lr-~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a 235 (987)
T PRK09782 160 LAQLPVARAQLN-DA-TFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRL 235 (987)
T ss_pred hhhHHHHHHHHH-Hh-hhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHH
Confidence 445677777776 33 33244445544444 8888889999999999999888753 234445555556666 355 666
Q ss_pred HHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHHH-------------------------
Q 005474 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR-IDPNAF------------------------- 273 (695)
Q Consensus 220 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~------------------------- 273 (695)
..++.. .+.-|...+..++..|.+.|+.++|.++++++...... |+..+|
T Consensus 236 ~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~ 311 (987)
T PRK09782 236 LALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN 311 (987)
T ss_pred HHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH
Confidence 666443 22356777777778888888888887777765432100 111000
Q ss_pred -----HHHHHHHH---------------------------------------------------------------HcCC
Q 005474 274 -----STLIKLYG---------------------------------------------------------------TAGN 285 (695)
Q Consensus 274 -----~~li~~~~---------------------------------------------------------------~~g~ 285 (695)
-.++..+. +.|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccc
Confidence 01122222 3344
Q ss_pred hHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCC---hHHHHHH----------------------HHHHHH-CCC-
Q 005474 286 FDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKR---PWQVKTI----------------------YKEMTD-NGL- 336 (695)
Q Consensus 286 ~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~---~~~a~~~----------------------~~~m~~-~~~- 336 (695)
.++|.++|+..... ....+.....-++..|.+.+. ...+..+ ...... .+.
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 44454444444331 011222333355566655554 2222222 111111 111
Q ss_pred CC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHH
Q 005474 337 SP--NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414 (695)
Q Consensus 337 ~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 414 (695)
++ +...|..+..++.. ++.++|...|.+..... |+......+...+...|++++|...|+++... .|+...+
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~ 545 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDL 545 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHH
Confidence 22 45666666666665 78888998887776653 45444444555567899999999999998654 3455556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC
Q 005474 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494 (695)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~ 494 (695)
..+...+.+.|+.++|.+.+++..+... .+...+..+...+.+.|++++|+..+++.++. .|+...+..+..++.+.
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC
Confidence 6777888999999999999999988541 23333444444555679999999999999855 57777888888899999
Q ss_pred CH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCcc-ccchHHHHHHHHhcCCHHHHHHHHH
Q 005474 495 PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLE 571 (695)
Q Consensus 495 ~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~-~~~~~~L~~~~~~~g~~~~A~~~l~ 571 (695)
|+ ++|...++.+...+|++..+...+|..+...| ..++|.+.+++. ...|+ ..++..++.++...|++++|+..++
T Consensus 623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G-~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 623 HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG-DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99 99999999999999999999999999988888 789999999876 44454 4488999999999999999999999
Q ss_pred HHHHcC
Q 005474 572 LGLTLE 577 (695)
Q Consensus 572 ~~~~~~ 577 (695)
++++..
T Consensus 702 ~Al~l~ 707 (987)
T PRK09782 702 LVIDDI 707 (987)
T ss_pred HHHhcC
Confidence 998765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-16 Score=174.50 Aligned_cols=336 Identities=7% Similarity=-0.021 Sum_probs=272.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246 (695)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 246 (695)
-...++..+.+.|++++|+.+++........ +...+..+..++...|++++|++.|+++.+.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3556677888999999999999999877433 34455556667778999999999999998853 335778888999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 005474 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326 (695)
Q Consensus 247 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 326 (695)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999998864 456778899999999999999999999988766433 23333333 34788999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhH
Q 005474 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE----AFEIFEDMK 402 (695)
Q Consensus 327 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~ 402 (695)
.++.+.+....++...+..+...+.+.|++++|...|++..+.... +...+..+...|...|++++ |+..|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9999887654445555566678889999999999999999887543 67778889999999999986 899999998
Q ss_pred hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCH
Q 005474 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481 (695)
Q Consensus 403 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 481 (695)
+.. +.+...+..+...+.+.|++++|...+++..+.. | +...+..+..+|.+.|++++|+..|+++.+. .|+.
T Consensus 278 ~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~ 351 (656)
T PRK15174 278 QFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVT 351 (656)
T ss_pred hhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc
Confidence 865 5677889999999999999999999999999853 4 5667778889999999999999999999865 5654
Q ss_pred HH-HHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh
Q 005474 482 RF-CGCLLNVMTQTPK-EELGKLVECVEKSNSKLG 514 (695)
Q Consensus 482 ~~-~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~ 514 (695)
.. +..+..++...|+ ++|...++++.+..|++.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 33 3334567788888 999999999999998763
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-16 Score=176.05 Aligned_cols=404 Identities=11% Similarity=0.010 Sum_probs=286.8
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005474 132 EQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211 (695)
Q Consensus 132 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 211 (695)
..|.+.+..-.++.++|++++..+... .+.+...+..+..++.+.|++++|.++|++..+.. +.+...+..+..++.
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~ 94 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 345667777788899999988888752 24456678889999999999999999999988762 334566677778889
Q ss_pred HcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005474 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291 (695)
Q Consensus 212 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 291 (695)
..|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +-+...+..+...+...|..++|++
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999988752 33555 8888889999999999999999999875 4466677778888888899999999
Q ss_pred HHHHHHHcCCCCCH------HhHHHHHHHHH-----hcCCh---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHH
Q 005474 292 VYEEMKAIGVKPNM------ITYNNLLDTMG-----RAKRP---WQVKTIYKEMTDN-GLSPNWN-TYA----SLLRAYG 351 (695)
Q Consensus 292 ~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-~~~~~~~-~~~----~li~~~~ 351 (695)
.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++.
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 8886654 2321 11112222221 22234 6778888888753 2223221 111 1133445
Q ss_pred hCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC--CHHHHHHHHHHHHHcCCHH
Q 005474 352 RARYGEDTLSVYREMKEKGMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP--DSWTFSSMITICSCRGKVS 428 (695)
Q Consensus 352 ~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~ 428 (695)
..|++++|+..|+.+.+.+.. |+.. ...+..+|...|++++|+.+|+++.+.....+ .......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 778899999999998877543 3322 22256788889999999999998876432110 1345666777788899999
Q ss_pred HHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhc
Q 005474 429 EAEAMFNEMLEAGF-----------EPN---LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQ 493 (695)
Q Consensus 429 ~A~~~~~~m~~~g~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~ 493 (695)
+|.++++.+.+... .|+ ...+..+...+...|+.++|+.+++++... .| +...+..+...+..
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 99999998887421 122 234556777888889999999999988754 45 44567777777777
Q ss_pred CCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCcccc
Q 005474 494 TPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKA 548 (695)
Q Consensus 494 ~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~ 548 (695)
.|. ++|.+.++++...+|++..+.-.++..+...| .+++|.++++++ ...|+.+
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~-~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ-EWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCH
Confidence 887 99999999999999988777777776666666 788888888776 3445544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-15 Score=172.25 Aligned_cols=404 Identities=9% Similarity=-0.004 Sum_probs=303.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHH
Q 005474 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243 (695)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 243 (695)
+..-..-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|.++|++..+.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44444556677889999999999999988631 4456678899999999999999999999988742 335777888999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHH
Q 005474 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323 (695)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 323 (695)
.+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+..+.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999998874 45666 888999999999999999999999987432 55666677888888999999
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hCCCh---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHH
Q 005474 324 VKTIYKEMTDNGLSPNW------NTYASLLRAYG-----RARYG---EDTLSVYREMKEK-GMQLSVT-LY----NTLLA 383 (695)
Q Consensus 324 a~~~~~~m~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~~~-~~----~~li~ 383 (695)
|.+.++.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+ ...+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9998876654 2221 11122222222 22234 7788888888854 2223221 11 11133
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcC
Q 005474 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP---NLFVLTSLIQCYGKAQ 460 (695)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g 460 (695)
++...|++++|+..|+.+.+.+.-.|+. ....+...|...|++++|...|+++.+..... ....+..+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 4567799999999999998865211332 22235778999999999999999988743211 1345667777889999
Q ss_pred CHhHHHHHHHHhhhCC-----------CCCCH---HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhc
Q 005474 461 RTDDVVRALNRLPELG-----------ITPDD---RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQD 525 (695)
Q Consensus 461 ~~~~A~~~~~~m~~~g-----------~~pd~---~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (695)
++++|+.+++++.+.. -.|+. ..+..+...+...|+ ++|.+.++++....|++..+...++..+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999988542 12332 234455567777888 99999999999999999999999999888
Q ss_pred chhhHHHHHHHHHHhc-ccCccc-cchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 526 IEGDFKKEATELFNSI-SKDVKK-AYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 526 ~~g~~~~eA~~l~~~~-~~~~~~-~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
..| ..++|++.++++ ...|+. .++-.++..+...|++++|+.+++.+++..
T Consensus 405 ~~g-~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 405 ARG-WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred hcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 888 789999999877 445654 466788889999999999999999998754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-14 Score=159.09 Aligned_cols=429 Identities=10% Similarity=-0.013 Sum_probs=276.5
Q ss_pred CCCCCHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHH--------HHhcCCHHHHHHHHHHHHHcCCCC
Q 005474 127 GDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKV--------FRKCRDLDKAERLFDDMLDRGVKP 198 (695)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~g~~p 198 (695)
..++........+..+.++.+|..+++.+....+ -+..++..+... |.+. ++|.+.++ .......|
T Consensus 106 ~ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~P--~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~ 179 (987)
T PRK09782 106 KRHPGDARLERSLAAIPVEVKSVTTVEELLAQQK--ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASP 179 (987)
T ss_pred hcCcccHHHHHHHHHhccChhHHHHHHHHHHhCC--CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCC
Confidence 3344333444444555677888888888877642 233334444443 5554 44444444 33333334
Q ss_pred CHHHHHHH-HHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 005474 199 DNVTFSTL-ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR-AGNVEMAFGLYDRARNEKWRIDPNAFSTL 276 (695)
Q Consensus 199 ~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 276 (695)
+..+.... ...|.+.|++++|++++.++.+.+ ..+..-...|..+|.. .++ +++..+++. .+.-+...+..+
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~al 253 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITY 253 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHH
Confidence 45555555 778888999999999999988875 3345556677777777 366 777777553 223688888999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCC-CCHHhHHH------------------------------HHHHH----------
Q 005474 277 IKLYGTAGNFDGCLNVYEEMKAIGVK-PNMITYNN------------------------------LLDTM---------- 315 (695)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~------------------------------li~~~---------- 315 (695)
...|.+.|+.++|.++++++...... |...+|.. ++..+
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999887543111 22122111 01122
Q ss_pred -----------------------------------------------------HhcCChHHHHHHHHHHHHC--CCCCCH
Q 005474 316 -----------------------------------------------------GRAKRPWQVKTIYKEMTDN--GLSPNW 340 (695)
Q Consensus 316 -----------------------------------------------------~~~g~~~~a~~~~~~m~~~--~~~~~~ 340 (695)
.+.|+.++|.++|+..... ....+.
T Consensus 334 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (987)
T PRK09782 334 KLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ 413 (987)
T ss_pred HHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence 2233444444444443331 011123
Q ss_pred HHHHHHHHHHHhCCC---hHHHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHhcCCH
Q 005474 341 NTYASLLRAYGRARY---GEDTLSV----------------------YREMKEK-GM-QL--SVTLYNTLLAMCADVGYT 391 (695)
Q Consensus 341 ~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m~~~-~~-~~--~~~~~~~li~~~~~~g~~ 391 (695)
....-++..|.+.+. ..++..+ ++..... +. +. +...|..+..++.. |+.
T Consensus 414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc
Confidence 333355555555544 2222111 1111110 11 22 45566666666665 788
Q ss_pred HHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 005474 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471 (695)
Q Consensus 392 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 471 (695)
++|+..+.+.... .|+......+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...+++
T Consensus 493 ~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 493 GVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred HHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8899877777654 466555445555567899999999999998663 45555667778888999999999999999
Q ss_pred hhhCCCCCCHH-HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCcccc
Q 005474 472 LPELGITPDDR-FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKA 548 (695)
Q Consensus 472 m~~~g~~pd~~-~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~ 548 (695)
.++.. |+.. .+..+...+...|+ ++|...++++.+.+|+ ......++..+.+.| ..++|.+.+++. ...|+..
T Consensus 568 AL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG-~~deA~~~l~~AL~l~Pd~~ 643 (987)
T PRK09782 568 AEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH-NVPAAVSDLRAALELEPNNS 643 (987)
T ss_pred HHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCH
Confidence 98653 5433 33333444455677 9999999999999997 777788888888888 899999999776 4556544
Q ss_pred -chHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 549 -YCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 549 -~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
.++.++.++...|++++|+..++++++..
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77999999999999999999999998764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-13 Score=154.05 Aligned_cols=428 Identities=10% Similarity=0.029 Sum_probs=297.3
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005474 138 ILNNMTNPDTAALALTYFTNKLKASKEV--ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215 (695)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 215 (695)
+...-+++..|++.|+.+.+.. |+. .++ .++..+...|+.++|+..+++.... ..........+...+...|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 3344556888999888887653 442 234 7888888889999999999888721 11122233333457888899
Q ss_pred hhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005474 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295 (695)
Q Consensus 216 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (695)
+++|+++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999998853 234677778888889999999999999998876 45655565555555556677679999999
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH------HHHHHHHH---H--hCCC---hHHHHH
Q 005474 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT------YASLLRAY---G--RARY---GEDTLS 361 (695)
Q Consensus 296 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~------~~~li~~~---~--~~g~---~~~A~~ 361 (695)
+.+... -+...+..++.++.+.|-...|.++..+-... +.+...- ...++..- . ...+ .+.|+.
T Consensus 195 ll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 988742 25667778888888888888888766553211 1111100 00111100 0 1122 344555
Q ss_pred HHHHHHHc-CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005474 362 VYREMKEK-GMQLSV-TLY----NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435 (695)
Q Consensus 362 ~~~~m~~~-~~~~~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 435 (695)
-++.+... +..|.. ..| .-.+-++...|++.++++.|+.+...+. +....+-.++.++|...++.++|..+++
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~-~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY-KMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 55555542 222321 111 2345577888999999999999998774 4455577889999999999999999999
Q ss_pred HHHHCC-----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCC-------------CCCCHHH-HHHHHHHHhcCCH
Q 005474 436 EMLEAG-----FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-------------ITPDDRF-CGCLLNVMTQTPK 496 (695)
Q Consensus 436 ~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~pd~~~-~~~ll~~~~~~~~ 496 (695)
.+.... ..++......|.-+|...+++++|..+++++.+.. ..||-.. +..+...+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 987643 12344446788889999999999999999987621 2233333 3334455677777
Q ss_pred -HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcc-cCccc-cchHHHHHHHHhcCCHHHHHHHHHHH
Q 005474 497 -EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKK-AYCNCLIDLCVNLNLLENACKLLELG 573 (695)
Q Consensus 497 -~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~-~~~~~-~~~~~L~~~~~~~g~~~~A~~~l~~~ 573 (695)
.+|++.++.+....|.+..+...++..+..+| ...+|++.++.+. ..|+. .+.-.++.+....|++++|..+.+..
T Consensus 432 l~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg-~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 432 LPTAQKKLEDLSSTAPANQNLRIALASIYLARD-LPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999999999998988888888 8899999997653 34443 35567888888999999999999887
Q ss_pred HHcC
Q 005474 574 LTLE 577 (695)
Q Consensus 574 ~~~~ 577 (695)
.+..
T Consensus 511 ~~~~ 514 (822)
T PRK14574 511 ISRS 514 (822)
T ss_pred HhhC
Confidence 7654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-14 Score=137.48 Aligned_cols=324 Identities=19% Similarity=0.273 Sum_probs=233.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCChhHH-HHHHHhchhCC-----------
Q 005474 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC--ARMNNLPNKA-VEWFERMPSFG----------- 230 (695)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A-~~~~~~m~~~g----------- 230 (695)
+++=|.++. +..+|.+.++.-+|+.|...|+..+...-..|+.. |-...++--| .+.|-.|.+.|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 334455554 34567777788888888887776666665555552 2222222211 23344443322
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005474 231 --------CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302 (695)
Q Consensus 231 --------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 302 (695)
.+.+..+|..||.++|+--..+.|.++|++......+.+..+||.+|.+-.-. ...+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 23467889999999999999999999999998888889999999998654432 227889999999999
Q ss_pred CCHHhHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHH----cCCCC
Q 005474 303 PNMITYNNLLDTMGRAKRPWQ----VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED-TLSVYREMKE----KGMQL 373 (695)
Q Consensus 303 p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~~~ 373 (695)
||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999999999999998765 56778889999999999999999999888887644 4444444432 22222
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 005474 374 ----SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN---CQPD---SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443 (695)
Q Consensus 374 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 443 (695)
|...|...+..|....+.+-|.++..-+..... +.|+ ..-|..+..+.|+...++.-...|+.|.-.-+-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 445667778888888899988888777654322 1222 334667778888888999999999999887777
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 005474 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493 (695)
Q Consensus 444 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 493 (695)
|+..+...++++..-.|+++-.-+++..|+..|..-+...-..++..++.
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 88888888999999999999999999998887755444444444443333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-12 Score=145.59 Aligned_cols=403 Identities=12% Similarity=0.069 Sum_probs=296.2
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005474 134 DCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213 (695)
Q Consensus 134 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 213 (695)
+.+.++...++..+|+..++.+... ...+......+...|...|++++|+++|+++.+.. +-+...+..++..+...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhc
Confidence 5566667778899999999988611 12234344444668889999999999999999873 23466677778899999
Q ss_pred CChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005474 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293 (695)
Q Consensus 214 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 293 (695)
++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. +-+...+..++....+.|-...|+++.
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 9999999999999874 5676666555555555677767999999999885 557888899999999999999999887
Q ss_pred HHHHHcCCCCCHHhHHH--------HHHHH-----HhcCChHH---HHHHHHHHHH-CCCCCCH-H----HHHHHHHHHH
Q 005474 294 EEMKAIGVKPNMITYNN--------LLDTM-----GRAKRPWQ---VKTIYKEMTD-NGLSPNW-N----TYASLLRAYG 351 (695)
Q Consensus 294 ~~m~~~g~~p~~~~~~~--------li~~~-----~~~g~~~~---a~~~~~~m~~-~~~~~~~-~----~~~~li~~~~ 351 (695)
.+-.+. + +...+.. ++..- ....++.. |+.-++.+.. .+..|.. . ...-.+-++.
T Consensus 227 ~~~p~~-f--~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 227 KENPNL-V--SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HhCccc-c--CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 764422 1 1111111 11100 11223333 4444444443 1222322 1 2223455778
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC----CCCCHHHHHHHHHHHHHcCCH
Q 005474 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN----CQPDSWTFSSMITICSCRGKV 427 (695)
Q Consensus 352 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~ 427 (695)
..|++.++++.|+.|...+.+....+-..+.++|...+++++|+.+|+.+..... ..++......|..+|...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 8999999999999999988776677888899999999999999999999866431 123444567899999999999
Q ss_pred HHHHHHHHHHHHCCC-------------CCCH-HHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHh
Q 005474 428 SEAEAMFNEMLEAGF-------------EPNL-FVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMT 492 (695)
Q Consensus 428 ~~A~~~~~~m~~~g~-------------~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~ 492 (695)
++|..+++.+.+... .||- ..+..++..+...|+..+|.+.++++... .| |......+-..+.
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~ 461 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYL 461 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 999999999987311 1222 23455677888999999999999999754 55 6677888888888
Q ss_pred cCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCcccc
Q 005474 493 QTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKA 548 (695)
Q Consensus 493 ~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~ 548 (695)
..|. .+|.+.++.++.++|++..+...+++.+...+ .+++|..+++.+ ...|+..
T Consensus 462 ~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~-e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 462 ARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQ-EWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred hcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhCCCch
Confidence 8888 99999999999999999888888888887777 889999888766 3334443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-13 Score=144.01 Aligned_cols=423 Identities=15% Similarity=0.101 Sum_probs=319.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChhHHHHH
Q 005474 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK--PDNVTFSTLISCARMNNLPNKAVEW 222 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~ 222 (695)
++.+.+.+..+.... ..|+++.+.|...|.-.|++..++.+...+...... .-...|--+.++|-..|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 778888888887764 456677899999999999999999999998865311 1234577788899999999999999
Q ss_pred HHhchhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHH
Q 005474 223 FERMPSFGCDPDA--LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG----NFDGCLNVYEEM 296 (695)
Q Consensus 223 ~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m 296 (695)
|.+..+. .+|. ..+.-|...|.+.|+++.+...|+.+.+.. +-+..+...|...|...+ ..++|..++.+.
T Consensus 330 Y~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 330 YMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 9877663 4444 344557899999999999999999998764 445667777777777765 567777887777
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc---
Q 005474 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE----MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK--- 369 (695)
Q Consensus 297 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 369 (695)
.+.- +.|...|-.+...+-... ...+..+|.. +...+-.+.....|.+...+...|.++.|...|......
T Consensus 407 ~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 407 LEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred Hhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 7653 336777777766665544 4333665554 345565678889999999999999999999999988755
Q ss_pred CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 005474 370 GMQLSV------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443 (695)
Q Consensus 370 ~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 443 (695)
...+|. .+-..+...+...++.+.|.+.|..+.+.. +--+..|..+..+....++..+|...++...... .
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~ 561 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-S 561 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-c
Confidence 222333 223337777888899999999999998864 3334445555544445678889999999988732 3
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHhhh-CCCCCCHHHHHHHHHHHhcC-------C-----H-HHHHHHHHHHHHc
Q 005474 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPE-LGITPDDRFCGCLLNVMTQT-------P-----K-EELGKLVECVEKS 509 (695)
Q Consensus 444 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~~~~~ll~~~~~~-------~-----~-~~a~~~~~~~~~~ 509 (695)
-+...+..+...|.+...+.-|.+-|+...+ ....+|......|.+.|.+. + . +.|.++|.+++..
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~ 641 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN 641 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777788888889888887776653 22346877777787766532 1 2 7788899999999
Q ss_pred CCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccC--ccccchHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Q 005474 510 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD--VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEV 578 (695)
Q Consensus 510 ~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~--~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~ 578 (695)
+|.+..+.|-+|-+++..| ++++|+.+|.++... ....+|-.++.+|..+|++..|+++|+..++.-.
T Consensus 642 dpkN~yAANGIgiVLA~kg-~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKG-RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred Ccchhhhccchhhhhhhcc-CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998888 899999999888543 2456898999999999999999999999986644
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-12 Score=125.77 Aligned_cols=355 Identities=17% Similarity=0.189 Sum_probs=250.7
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 005474 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276 (695)
Q Consensus 197 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 276 (695)
+.+..+|.++|.++++--..+.|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 4477899999999999999999999999988777788999999999875433 337899999999999999999999
Q ss_pred HHHHHHcCChHH----HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHH-HHHHHHHHHH----CCCC----CCHHHH
Q 005474 277 IKLYGTAGNFDG----CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTD----NGLS----PNWNTY 343 (695)
Q Consensus 277 i~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~~----~~~~~~ 343 (695)
+++..+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..++ .|...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 56788899999999999999999999999988754 4445555443 2222 245667
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHH
Q 005474 344 ASLLRAYGRARYGEDTLSVYREMKEKG----MQLS---VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416 (695)
Q Consensus 344 ~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 416 (695)
...+..|.+..+.+.|.++...+.... +.|+ ..-|..+....++....+.-...|+.|.-.-. -|+..+...
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y-~p~~~~m~~ 438 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY-FPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee-cCCchhHHH
Confidence 788889999999999999877665321 2233 23466677888888999999999999987654 799999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH---HHHHHHHHHhc
Q 005474 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR---FCGCLLNVMTQ 493 (695)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---~~~~ll~~~~~ 493 (695)
++++....|.++-.-+++..++..|..-+.. + -..++..|......|+.. -+.....-|..
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~-----l-----------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSD-----L-----------REEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHH-----H-----------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999998865332222 2 223344444434444322 33333222211
Q ss_pred CCHHHHHHHHHHHHHc--CCC-hhHHHHHHhhhhcchhhHHHHHHHHHHhcc----cCccccchH---HHHHHHHhcCCH
Q 005474 494 TPKEELGKLVECVEKS--NSK-LGYVVKLLLEEQDIEGDFKKEATELFNSIS----KDVKKAYCN---CLIDLCVNLNLL 563 (695)
Q Consensus 494 ~~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~----~~~~~~~~~---~L~~~~~~~g~~ 563 (695)
.-.+..+.--.++... .|. ..++.-+|.+. | ..++|.+++.-+. .-|..+..| -|++.-.+.++.
T Consensus 503 d~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~----G-~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQDWPATSLNCIAILLLRA----G-RTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred HHHHHHHhhHHHHHhccCChhHHHHHHHHHHHc----c-hHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCH
Confidence 0001111111222221 121 23333444442 5 8899999876652 224444556 455677788888
Q ss_pred HHHHHHHHHHHHcC
Q 005474 564 ENACKLLELGLTLE 577 (695)
Q Consensus 564 ~~A~~~l~~~~~~~ 577 (695)
-.|...++.|...+
T Consensus 578 sqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 578 SQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHHHHcC
Confidence 89999999987654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-13 Score=133.65 Aligned_cols=397 Identities=12% Similarity=0.083 Sum_probs=238.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCChhHHHHHHHhchhCCCCCC----HHHHHHHHHHH
Q 005474 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL-ISCARMNNLPNKAVEWFERMPSFGCDPD----ALTYSSMIDAY 245 (695)
Q Consensus 171 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~ 245 (695)
+..-|..+....+|+..|+-+.+...-|+.-....= -+.+.+...+.+|+++|+.....-...+ ....+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 334455556666777777766666555555433222 2345556667777777665544211111 22344444556
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH------------HhHHHHH-
Q 005474 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM------------ITYNNLL- 312 (695)
Q Consensus 246 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------------~~~~~li- 312 (695)
.+.|+++.|+..|+...+. .|+..+--.|+-++.-.|+.++..+.|.+|+.....||. ...+.-|
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 6677777777777776655 466655555555555667777777777777654322221 1111111
Q ss_pred ----HHHHhcCChHHHHHHHH---HHHHCCCCCCHHH-------------H--------HHHHHHHHhCCChHHHHHHHH
Q 005474 313 ----DTMGRAKRPWQVKTIYK---EMTDNGLSPNWNT-------------Y--------ASLLRAYGRARYGEDTLSVYR 364 (695)
Q Consensus 313 ----~~~~~~g~~~~a~~~~~---~m~~~~~~~~~~~-------------~--------~~li~~~~~~g~~~~A~~~~~ 364 (695)
.-.-+..+ ..|++.+- .++.--+.|+... + ..-..-|.++|+++.|.+++.
T Consensus 365 nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 365 NDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 11111110 01111111 1111011111000 0 001224556666666666655
Q ss_pred HHHHcCCCCCH-------------------------------HHHHHH-----HHHHHhcCCHHHHHHHHHHhHhCCCCC
Q 005474 365 EMKEKGMQLSV-------------------------------TLYNTL-----LAMCADVGYTDEAFEIFEDMKSSENCQ 408 (695)
Q Consensus 365 ~m~~~~~~~~~-------------------------------~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~~~~~ 408 (695)
-+.++.-+.-. .-||.- .......|++++|.+.|++...... .
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda-s 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA-S 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch-H
Confidence 55433211100 111110 1112236889999999999876442 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC-CHHHHHHH
Q 005474 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCL 487 (695)
Q Consensus 409 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~l 487 (695)
-....|| +.-.+-..|++++|++.|-++..- +..+..+...+.+.|....+...|++++.+.. .+.| |......|
T Consensus 523 c~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~--slip~dp~ilskl 598 (840)
T KOG2003|consen 523 CTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDPAILSKL 598 (840)
T ss_pred HHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCHHHHHHH
Confidence 2222233 233467889999999999877542 23477788888999999999999999998765 3455 67789999
Q ss_pred HHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCccccchHHHHHHH-HhcCCHH
Q 005474 488 LNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLC-VNLNLLE 564 (695)
Q Consensus 488 l~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~~~~~L~~~~-~~~g~~~ 564 (695)
...|.+.|+ .+|.+..-.-.+.-|.+..++..|+..|.+.. ++++|..+|++. -.+|+..-|.-++..| .+.|++.
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq-f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ-FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH-HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 999999999 88998877777788998899999987777655 899999999887 5678988998877555 6789999
Q ss_pred HHHHHHHHHHHc
Q 005474 565 NACKLLELGLTL 576 (695)
Q Consensus 565 ~A~~~l~~~~~~ 576 (695)
+|..+++...+.
T Consensus 678 ka~d~yk~~hrk 689 (840)
T KOG2003|consen 678 KAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-10 Score=114.94 Aligned_cols=433 Identities=9% Similarity=0.022 Sum_probs=335.3
Q ss_pred CCHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCHHHHHH
Q 005474 130 FLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDM----LDRGVKPDNVTFST 205 (695)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~~~~~ 205 (695)
+..-+.-..+..+..+..|..+++.+++. ++-+..+|-+....=-.+|+.+...+++++- ...|+..+...|-.
T Consensus 407 p~s~dLwlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 407 PQSMDLWLALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 34444445555566688899999999887 4567777887777778889999988887663 45688889998888
Q ss_pred HHHHHHHcCChhHHHHHHHhchhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 005474 206 LISCARMNNLPNKAVEWFERMPSFGCDP--DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283 (695)
Q Consensus 206 li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 283 (695)
=...|-..|..-.+..+....+..|++- -..||+.-...|.+.+.++-|..+|...++-- +.+...|......--..
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhc
Confidence 8888888898888888888888777653 35688888899999999999999999988653 56777888888777788
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 005474 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363 (695)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 363 (695)
|..++...+|++....- +-....|.....-+-..|+...|..++....+.... +...|-.-+..-..+..++.|..+|
T Consensus 564 gt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHH
Confidence 99999999999998863 335666766777788899999999999999886543 6788888999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 005474 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443 (695)
Q Consensus 364 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 443 (695)
.+.... .++...|.--+...-..++.++|++++++..+.. +.-...|..+.+.+-+.++++.|.+.|..-.+. ++
T Consensus 642 akar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 642 AKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 988764 4577777766777777899999999999988753 444567888888899999999999988776653 33
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHh
Q 005474 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLL 521 (695)
Q Consensus 444 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~ 521 (695)
-.+..|..+...-.+.|..-.|..+|++.... .| |...|...+..-.+.|. ++|..++.++..--|+.+....--.
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI 794 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAI 794 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHH
Confidence 35667777777888899999999999998765 34 67789999999999999 9999999988888887654332111
Q ss_pred hhhcchhhHHHHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 522 EEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 522 ~~~~~~g~~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
.. ...+++.-.+.+-+++. +.++.+.-+....+|...+++.|++.|+++++..
T Consensus 795 ~l-e~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 795 WL-EPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred Hh-ccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 11 11122222333333332 3455567788888999999999999999998765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-11 Score=128.95 Aligned_cols=442 Identities=13% Similarity=0.093 Sum_probs=316.4
Q ss_pred HhCCCCCHHHHHHHHHhh----CChHHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005474 125 CLGDDFLEQDCVIILNNM----TNPDTAALALTYFTNKLKASK-EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD 199 (695)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 199 (695)
++...+...+++..+... +++..+..+...+.......+ -...|--+.++|...|++++|...|.+..+. .+|
T Consensus 262 ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d 339 (1018)
T KOG2002|consen 262 AYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DND 339 (1018)
T ss_pred HHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCC
Confidence 344444444444433332 247778888777765432222 2345777899999999999999999776654 555
Q ss_pred HHHH--HHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHhhCCCCCCHHHH
Q 005474 200 NVTF--STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG----NVEMAFGLYDRARNEKWRIDPNAF 273 (695)
Q Consensus 200 ~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~g~~~~~~~~ 273 (695)
.+++ --|...|.+.|+++.+...|+...+.. +-+..|...|...|+..+ ..+.|..++.+..+.- +.|...|
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~ 417 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAW 417 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHH
Confidence 5444 446679999999999999999998752 335667777777777665 4677888887777654 5678888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH----HHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCH------
Q 005474 274 STLIKLYGTAGNFDGCLNVYEEM----KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNW------ 340 (695)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~------ 340 (695)
-.+...|....-+ .++.+|... ...+-.+.....|.+.......|.+..|...|...... ...+|.
T Consensus 418 l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 418 LELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 8888777665444 447776654 34555577889999999999999999999999988754 122232
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHH
Q 005474 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV-TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419 (695)
Q Consensus 341 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 419 (695)
.+--.+...+-..++.+.|.+.|..+.+.. |.- ..|--+.......+...+|..+++...... ..+...++.+..
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~ 572 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGN 572 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHH
Confidence 222335556667789999999999998863 332 233334433444578889999999998866 456666666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH------------cCCHhHHHHHHHHhhhCCCCC-CHHHHH
Q 005474 420 ICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGK------------AQRTDDVVRALNRLPELGITP-DDRFCG 485 (695)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p-d~~~~~ 485 (695)
.+.+...+..|.+-|....+.- ..+|..+.-+|.+.|.. .+..+.|+++|.+.+.. .| |...-+
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAAN 650 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAAN 650 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhcc
Confidence 8888888888888777766532 22577766666665532 34677899999988855 45 566677
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcc----cCccccchHHHHHHHHhc
Q 005474 486 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS----KDVKKAYCNCLIDLCVNL 560 (695)
Q Consensus 486 ~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~----~~~~~~~~~~L~~~~~~~ 560 (695)
.+.-+++..|. .+|..+|.++.+.--+...++-.|+-+|...| .+..|.++++..- ...+..+...|+.++++.
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~-qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQG-QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 77778888898 99999999998766556667777888888888 8899999987652 233555889999999999
Q ss_pred CCHHHHHHHHHHHHHcCc
Q 005474 561 NLLENACKLLELGLTLEV 578 (695)
Q Consensus 561 g~~~~A~~~l~~~~~~~~ 578 (695)
|.+.+|.+.+..+....+
T Consensus 730 ~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 730 GKLQEAKEALLKARHLAP 747 (1018)
T ss_pred hhHHHHHHHHHHHHHhCC
Confidence 999999999999876543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-12 Score=136.91 Aligned_cols=286 Identities=12% Similarity=0.008 Sum_probs=183.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 005474 283 AGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 361 (695)
.|+++.|.+.+.+..+.. |+ ...+-....++.+.|+++.|.+.+.+..+....++..........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 566666666666555442 33 223333345556666666666666666543322222233334556666777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHH-HHHHH---HHcCCHHHHHHHHHHH
Q 005474 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS-MITIC---SCRGKVSEAEAMFNEM 437 (695)
Q Consensus 362 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~-li~~~---~~~g~~~~A~~~~~~m 437 (695)
.++.+.+..+. +...+..+...|.+.|++++|.+++..+.+.+. .+...+.. -..++ ...+..+++.+.+..+
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777666533 455666677777777777777777777776653 23332311 11111 2222223333344444
Q ss_pred HHCCC---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHH-HHHHHH--hcCCH-HHHHHHHHHHHHcC
Q 005474 438 LEAGF---EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG-CLLNVM--TQTPK-EELGKLVECVEKSN 510 (695)
Q Consensus 438 ~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~-~ll~~~--~~~~~-~~a~~~~~~~~~~~ 510 (695)
.+... +.+...+..+...+...|+.++|.+++++..+. .||..... .++..+ ...++ +.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 44221 137788888888999999999999999988865 44443110 122222 22344 78888999999999
Q ss_pred CChh--HHHHHHhhhhcchhhHHHHHHHHHHh---cccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005474 511 SKLG--YVVKLLLEEQDIEGDFKKEATELFNS---ISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 576 (695)
Q Consensus 511 p~~~--~~~~~l~~~~~~~g~~~~eA~~l~~~---~~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~ 576 (695)
|++. .+.+.||+.+...| .+++|++.|+. ....|+..++..|+.++.+.|+.++|.+++++++..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~-~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHG-EFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCChhHHHHHHHHHHHHHcc-cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999 88899999998888 89999999993 356788888889999999999999999999998643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-11 Score=128.90 Aligned_cols=282 Identities=12% Similarity=0.106 Sum_probs=190.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCChhHHHHHHHhchhCCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 005474 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTL-ISCARMNNLPNKAVEWFERMPSFGCDPDALTYS--SMIDAYGRAGNVEMA 254 (695)
Q Consensus 178 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A 254 (695)
.|++++|++.+....+.. ++...+..+ .....+.|+++.|.+.|.++.+. .|+...+. .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 588888887777655442 122333333 33457888888888888888763 45543332 335677888888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HhHHHHHHHHHhcCChHHHHHH
Q 005474 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM-------ITYNNLLDTMGRAKRPWQVKTI 327 (695)
Q Consensus 255 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~ 327 (695)
.+.++++.+.. +-+..+...+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888775 556778888888888888888888888888877654222 1233333333344445555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC
Q 005474 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407 (695)
Q Consensus 328 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (695)
++.+.+. .+.+......+...+...|+.++|.+++++..+. .+|.... ++.+....++.+++++..+...+..
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-- 324 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-- 324 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--
Confidence 5555332 2346667777777888888888888888777764 3333211 2333445577888888887777654
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 408 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
+-|...+..+...|.+.+++++|.+.|+.+.+ ..|+...|..+...+.+.|+.++|..++++..
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666677777888888888888888888877 45777777778888888888888888887654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-11 Score=121.01 Aligned_cols=383 Identities=15% Similarity=0.135 Sum_probs=250.9
Q ss_pred hHHHHHHHHHHHhcCC-CCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 005474 145 PDTAALALTYFTNKLK-ASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 221 (695)
+.+|+.+++.+..+.+ +..+ ....|.+.-.+.+.|++++|+.-|+...+. .|+..+--.|+-++..-|+.++..+
T Consensus 253 fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmke 330 (840)
T KOG2003|consen 253 FSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKE 330 (840)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHH
Confidence 5678888888776642 1112 233555555677889999999999998876 6787776666667777889999999
Q ss_pred HHHhchhCCCC------------CCHHHHHHHH-----HHHHhcC--CHHHHHHHHHHHhhCCCCCCHH-----------
Q 005474 222 WFERMPSFGCD------------PDALTYSSMI-----DAYGRAG--NVEMAFGLYDRARNEKWRIDPN----------- 271 (695)
Q Consensus 222 ~~~~m~~~g~~------------p~~~~~~~li-----~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~----------- 271 (695)
.|.+|...... |+....+.-| +-.-+.+ +.++++-.--+++.--+.|+-.
T Consensus 331 af~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk 410 (840)
T KOG2003|consen 331 AFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLK 410 (840)
T ss_pred HHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHH
Confidence 99998753222 3333333222 1122211 1222222222222211222211
Q ss_pred --HH--------HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHH--H---------------------------
Q 005474 272 --AF--------STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL--L--------------------------- 312 (695)
Q Consensus 272 --~~--------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--i--------------------------- 312 (695)
.+ ..-...|.+.|+++.|+++++-+....-+.-...-+.| +
T Consensus 411 ~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~ 490 (840)
T KOG2003|consen 411 ASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA 490 (840)
T ss_pred HhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH
Confidence 00 11234577899999999998877554221111111111 0
Q ss_pred -------HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005474 313 -------DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385 (695)
Q Consensus 313 -------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 385 (695)
+.....|++++|.+.+++.....-.-....|| +.-.+-..|++++|++.|-++... +..+..+...+...|
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiy 568 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIY 568 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 01134578888888888888754332233333 233456788999999988776542 112666677788888
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 005474 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465 (695)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 465 (695)
....+..+|++++.+.... ++.|+...+-|.+.|-+.|+-.+|.+.+-+--.. ++-|..+..-|..-|....-+++|
T Consensus 569 e~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~eka 645 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKA 645 (840)
T ss_pred HHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHH
Confidence 8889999999998877653 4778888999999999999999888876544332 344888888888888888999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHhc-CCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHH
Q 005474 466 VRALNRLPELGITPDDRFCGCLLNVMTQ-TPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 538 (695)
Q Consensus 466 ~~~~~~m~~~g~~pd~~~~~~ll~~~~~-~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~ 538 (695)
+.+|++.. -+.|+..-|..++..|.+ .|. ..|..+++.+.+.-|.+...+..|.+...+.| +.++.++-
T Consensus 646 i~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg--l~d~key~ 716 (840)
T KOG2003|consen 646 INYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG--LKDAKEYA 716 (840)
T ss_pred HHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc--chhHHHHH
Confidence 99999865 468999999988886654 566 99999999998888988888888877665555 34555543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-09 Score=108.31 Aligned_cols=421 Identities=17% Similarity=0.140 Sum_probs=315.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHH
Q 005474 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDN-VTFSTLISCARMNNLPNKAVEWF 223 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 223 (695)
..+|..+|+.+... ...+...|-..+.+=.+++.+..|..+|+..... -|-+ ..|.-.+..=-..|++..|.++|
T Consensus 89 ~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 89 IQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 67899999988764 3567888999999999999999999999998865 3333 33444444555679999999999
Q ss_pred HhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-
Q 005474 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK- 302 (695)
Q Consensus 224 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~- 302 (695)
++..+ ..|+...|++.|+.=.+-..++.|..+|++..-. .|++.+|.-....=-++|+...|..+|+...+.--.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 99887 5899999999999999999999999999999865 599999999999889999999999999987754110
Q ss_pred -CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCChHHHHHH--------HHHHHHcCC
Q 005474 303 -PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN--WNTYASLLRAYGRARYGEDTLSV--------YREMKEKGM 371 (695)
Q Consensus 303 -p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~~~ 371 (695)
-+...+.++..-=.++..++.|.-+|+-.+..= +.+ ...|..+...--+-|+.....+. |+.+...+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n- 318 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN- 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-
Confidence 123344455554556778888999998887652 222 33444444433444554333322 34444443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCH--HHHHHHHHH---H-----HHcCCHHHHHHHHHHHHHCC
Q 005474 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS--WTFSSMITI---C-----SCRGKVSEAEAMFNEMLEAG 441 (695)
Q Consensus 372 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~~---~-----~~~g~~~~A~~~~~~m~~~g 441 (695)
+.|-.+|--.++.-...|+.+...++|+.....- +|-. ..|...|.. | ....+++.+.++|+..++.
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv--pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV--PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 2366777778888888899999999999998742 4522 122222211 1 2467899999999999982
Q ss_pred CCCCHHHHHHHH----HHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHH
Q 005474 442 FEPNLFVLTSLI----QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 516 (695)
Q Consensus 442 ~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~ 516 (695)
++....||..+- .--.++.+...|.+++...+ |.-|...+|...|..-.+.+. +.+.+++++.++..|.+-..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 333555555443 34457889999999999988 889999999999998888888 99999999999999998877
Q ss_pred HHHHhhhhcchhhHHHHHHHHHHhcccCcc----ccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcccC
Q 005474 517 VKLLLEEQDIEGDFKKEATELFNSISKDVK----KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 581 (695)
Q Consensus 517 ~~~l~~~~~~~g~~~~eA~~l~~~~~~~~~----~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 581 (695)
..-++......| ..+.|+.+|+-+..+|. ...|-+.|+.-...|.++.|+.++++.++......
T Consensus 474 W~kyaElE~~Lg-dtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 474 WSKYAELETSLG-DTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 777776655567 78999999987755553 22789999999999999999999999987654443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-11 Score=128.30 Aligned_cols=284 Identities=11% Similarity=0.043 Sum_probs=207.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhCCChHHHH
Q 005474 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA--SLLRAYGRARYGEDTL 360 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~A~ 360 (695)
.|+++.|.+.+....+..-. ....|.....+..+.|+++.|.+.+.++.+.. |+...+. .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 58888888777766553211 12233333445578888888888888887643 4433222 3356778888899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHH
Q 005474 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS------WTFSSMITICSCRGKVSEAEAMF 434 (695)
Q Consensus 361 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~ 434 (695)
..++++.+.... +...+..+...|.+.|++++|.+++..+.+.....+.. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888877644 66777788888888899999999998888876422221 12333444444455566666777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCh
Q 005474 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 513 (695)
Q Consensus 435 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~ 513 (695)
+.+.+. .+.+......+..++...|+.++|.+++++..+. .||..... +.+....++ +++.+.++...+..|++
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 666432 3457888889999999999999999999998864 44543222 222234466 88999999999999999
Q ss_pred hHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005474 514 GYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 576 (695)
Q Consensus 514 ~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~ 576 (695)
......+|+.+...+ .+++|++.|+.. ...|+...|-.|..++.+.|+.++|.+++++++..
T Consensus 328 ~~l~l~lgrl~~~~~-~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 328 PLLWSTLGQLLMKHG-EWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999888878 899999999877 56688888889999999999999999999998764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-11 Score=126.09 Aligned_cols=297 Identities=10% Similarity=0.002 Sum_probs=176.4
Q ss_pred HHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHhchhCCCCCCH--HHHHHHH
Q 005474 168 YNVTMKVF--RKCRDLDKAERLFDDMLDRGVKPDNVTF-STLISCARMNNLPNKAVEWFERMPSFGCDPDA--LTYSSMI 242 (695)
Q Consensus 168 ~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li 242 (695)
+..+..++ ...|+++.|.+.+....+. .|+...+ -....++.+.|+.+.|.+.|.+..+.. |+. .......
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a 160 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHH
Confidence 34444444 4567888888888776654 3443333 233346677788888888887776532 333 2334456
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHH-HHHH---HHhc
Q 005474 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN-LLDT---MGRA 318 (695)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~---~~~~ 318 (695)
..+...|+++.|...++++.+.. +-+..++..+...|.+.|++++|.++++.+.+.++. +...+.. -..+ ....
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 77777888888888888887765 456677777888888888888888888888777543 2222211 1111 1222
Q ss_pred CChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHH
Q 005474 319 KRPWQVKTIYKEMTDNGL---SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY-NTLLAMCADVGYTDEA 394 (695)
Q Consensus 319 g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A 394 (695)
+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence 222323334444433221 125666667777777777777777777777765333221111 1111122334566667
Q ss_pred HHHHHHhHhCCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 395 FEIFEDMKSSENCQPDS--WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 395 ~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
.+.++...+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 319 ~~~~e~~lk~~--p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 319 EKLIEKQAKNV--DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHhC--CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77776665543 2333 4555666777777777777777774333334566666777777777777777777777764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.3e-10 Score=109.42 Aligned_cols=330 Identities=15% Similarity=0.116 Sum_probs=238.0
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHH
Q 005474 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240 (695)
Q Consensus 161 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 240 (695)
...|...+-....++.+.|....|+..|...... -+..|.+-+....-..+.+.+..+...+... -....--.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~---~h~M~~~F 232 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSD---MHWMKKFF 232 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCccc---chHHHHHH
Confidence 3456655555666677889999999998887754 1233333333222222233222222111110 11112223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhc
Q 005474 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK--PNMITYNNLLDTMGRA 318 (695)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~ 318 (695)
+..++-...+.+++.+-.+.+...|++-+...-+-...+.....++|+|+.+|+++.+...- -|..+|..++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 55667777788999999999999887766666666666677789999999999999887321 1577887776443332
Q ss_pred CChH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005474 319 KRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397 (695)
Q Consensus 319 g~~~-~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 397 (695)
.+.. .|..+++ -.. --..|...+.+.|+-.++.++|...|+...+.+.. ....|+.+..-|....+...|++-
T Consensus 313 skLs~LA~~v~~---idK--yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVSN---IDK--YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHHH---hcc--CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 2221 1222221 112 23467778888999999999999999999987655 567889899999999999999999
Q ss_pred HHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCC
Q 005474 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476 (695)
Q Consensus 398 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 476 (695)
++...+.. +.|-..|-.|.++|.-.+...-|+-.|++..+ ++| |...|.+|.++|.+.++.++|++.|......|
T Consensus 387 YRrAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 387 YRRAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 99999865 78999999999999999999999999999998 455 89999999999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 005474 477 ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 508 (695)
Q Consensus 477 ~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~ 508 (695)
-. +...+..+...+.+.++ .+|.+.+++-.+
T Consensus 463 dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 463 DT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33 66778888888888888 888888776543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-10 Score=113.14 Aligned_cols=292 Identities=10% Similarity=0.033 Sum_probs=215.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 005474 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 362 (695)
.|+|..|+++..+-.+.+-. ....|..-..+-.+.|+.+.+-..+.+..+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57777777777776666543 34455555667777778888888877777654345666666677777778888888887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005474 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD------SWTFSSMITICSCRGKVSEAEAMFNE 436 (695)
Q Consensus 363 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~ 436 (695)
.+++.+.+.. +........++|.+.|++.+...++..|.+.+..... ..+|+.+++-....+..+.-...|++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777776555 5566677778888888888888888888877752221 23556666665555556665566666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH
Q 005474 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY 515 (695)
Q Consensus 437 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~ 515 (695)
.... .+.++..-.+++.-+.++|+.++|.++.++..+.+..|. ...++ .+.+-++ +.-.+..+...+..|+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 5442 344566677788888899999999999999888777766 22222 3445555 7778888888888999999
Q ss_pred HHHHHhhhhcchhhHHHHHHHHHHhc-ccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcccCc
Q 005474 516 VVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 582 (695)
Q Consensus 516 ~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 582 (695)
....||+.+.+.+ .+.+|.+.|+.. ...++...|+-+.+++-+.|+.++|.+..++++..-..|+.
T Consensus 330 L~~tLG~L~~k~~-~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 330 LLSTLGRLALKNK-LWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred HHHHHHHHHHHhh-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 9999999988888 899999999865 67788889999999999999999999999999855544543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=137.31 Aligned_cols=224 Identities=17% Similarity=0.190 Sum_probs=66.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 005474 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320 (695)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 320 (695)
+...+...++++.|.+.++++...+ +-+...+..++.. ...+++++|.+++++..+.. ++...+..++..+.+.++
T Consensus 50 ~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~ 125 (280)
T PF13429_consen 50 LADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGD 125 (280)
T ss_dssp ------------------------------------------------------------------------H-HHHTT-
T ss_pred ccccccccccccccccccccccccc-ccccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhH
Confidence 3334444445555555555554433 1133344444444 34555555555554443321 233344444455555555
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005474 321 PWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399 (695)
Q Consensus 321 ~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 399 (695)
++++.++++.+.... ...+...|..+...+.+.|+.++|++.|++..+..+. |....+.++..+...|+.+++.++++
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~ 204 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALK 204 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 555555555544321 2234444555555555555555555555555554322 34445555555555555555555555
Q ss_pred HhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 400 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
...+.. +.|...+..+..+|...|+.++|..+|++..+.. +.|......+..++...|+.++|..+.++.
T Consensus 205 ~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 205 RLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 544432 2333444555555555555555555555555421 124555555555555555555555555543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-10 Score=108.92 Aligned_cols=285 Identities=15% Similarity=0.178 Sum_probs=177.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCC------HHHHHHHHHHHHhcCCH
Q 005474 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD------ALTYSSMIDAYGRAGNV 251 (695)
Q Consensus 178 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~ 251 (695)
.++.++|.++|-+|.+.. +-+..+--+|-+.|.+.|..+.|+.+.+.+.++ || ......|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 456778888888887641 112223334556777788888888888777653 33 23344566677788888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCChHHHHHH
Q 005474 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQVKTI 327 (695)
Q Consensus 252 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~ 327 (695)
|.|+.+|..+.+.+ ..-.....-|+..|-...+|++|+++-+++...+..+.. ..|.-|...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 88888888887755 345566777888888888888888888887776544332 2344445555556677777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC
Q 005474 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407 (695)
Q Consensus 328 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (695)
+.+..+.+.+ .+..--.+.+.+...|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++....+..+.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 7777664322 2222334556667777777777777777776555455566667777777777777777777776643
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HcCCHhHHHHHHHHhh
Q 005474 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG---KAQRTDDVVRALNRLP 473 (695)
Q Consensus 408 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---~~g~~~~A~~~~~~m~ 473 (695)
+....-..+-+.-....-.+.|..++.+-... +|+...+..+|..-. ..|+..+-+.+++.|+
T Consensus 280 -~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 -TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred -CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 33333344444444444445555554444432 477777777766443 2344555555555554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=138.19 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=3.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 005474 551 NCLIDLCVNLNLLENACKLLELG 573 (695)
Q Consensus 551 ~~L~~~~~~~g~~~~A~~~l~~~ 573 (695)
..+++++...|+.++|.++.+++
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHT---------------
T ss_pred ccccccccccccccccccccccc
Confidence 34444444444444444444443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.3e-09 Score=106.43 Aligned_cols=385 Identities=11% Similarity=0.047 Sum_probs=265.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005474 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257 (695)
Q Consensus 178 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 257 (695)
..+.+.|.-++....+. ++.+...| -+|.+...++.|..++++..+. ++-+...|.+-...=-..|+.+...++
T Consensus 389 lE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 389 LEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred ccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 34455566666665554 22233333 3445566677777777777664 555677776666666677777777777
Q ss_pred HHHH----hhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005474 258 YDRA----RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN--MITYNNLLDTMGRAKRPWQVKTIYKEM 331 (695)
Q Consensus 258 ~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m 331 (695)
+++- ...|+..+...|-.=...|-..|..-.+..+....+..|+.-. ..||+.-...|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 6653 4457777777777777777777777777777777776665432 356777777788888888888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCH
Q 005474 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411 (695)
Q Consensus 332 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 411 (695)
++- ++.+...|...+..--..|..+.-..+|++....-. -....|-.....+-..|+...|..++.+..+.. +.+.
T Consensus 543 lqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnse 618 (913)
T KOG0495|consen 543 LQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSE 618 (913)
T ss_pred Hhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcH
Confidence 764 233556666666666667777888888887776533 355666666677777788888888888877755 4466
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH-HHHHHHHH
Q 005474 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNV 490 (695)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~ 490 (695)
..|-+-+..-.....++.|..+|.+... ..|+..+|.--+....-.+..++|++++++.++. -|+-. .|..+...
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQI 694 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHH
Confidence 7777777777888888888888887776 4477777777777777778888888888877743 56544 55555556
Q ss_pred HhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcc--cCccccchHHHHHHHHhcCCHHHHH
Q 005474 491 MTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS--KDVKKAYCNCLIDLCVNLNLLENAC 567 (695)
Q Consensus 491 ~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~--~~~~~~~~~~L~~~~~~~g~~~~A~ 567 (695)
+.+.+. +.|.+-|..-.+.-|+.....-+|+...-+.| .+-.|+.++++.. .+.+...|-..+.+-.+.|+.+.|.
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~-~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG-QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc-chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence 666666 77777776666777776666666766555556 6677888887663 2334457888888888999999888
Q ss_pred HHHHHHHHcC
Q 005474 568 KLLELGLTLE 577 (695)
Q Consensus 568 ~~l~~~~~~~ 577 (695)
.+..++++.-
T Consensus 774 ~lmakALQec 783 (913)
T KOG0495|consen 774 LLMAKALQEC 783 (913)
T ss_pred HHHHHHHHhC
Confidence 8888887543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-10 Score=111.46 Aligned_cols=217 Identities=13% Similarity=0.111 Sum_probs=157.4
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005474 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429 (695)
Q Consensus 350 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 429 (695)
+.-.|+.-.|..-|+..++....++. .|--+..+|.+..+.++.+..|....+.+ +-|..+|..-.+++.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHH
Confidence 34457888888888888876554333 26666777888888888888888888766 5566677777777777888888
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 005474 430 AEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECV 506 (695)
Q Consensus 430 A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~-~~a~~~~~~~ 506 (695)
|..=|++.+. +.| ++..|-.+..+..+.+++++++..|++..+. -| -...|+.....+...++ ++|.+.|+..
T Consensus 413 A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 413 AIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 9888888887 445 5666777777777888899999999888754 34 34567777777777777 8889999888
Q ss_pred HHcCCChh------HH-H-HHHhhhhcchhhHHHHHHHHHHhc-ccCccc-cchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005474 507 EKSNSKLG------YV-V-KLLLEEQDIEGDFKKEATELFNSI-SKDVKK-AYCNCLIDLCVNLNLLENACKLLELGLT 575 (695)
Q Consensus 507 ~~~~p~~~------~~-~-~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~-~~~~~L~~~~~~~g~~~~A~~~l~~~~~ 575 (695)
.++.|+.. .. + ..+.-... .+.+.+|.+++++. ..+|.- ..|.+|+....+.|+.++|+++|++...
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~qw--k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQW--KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhch--hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888722 11 1 11111111 23678888888766 445543 3788899999999999999999998764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.5e-10 Score=119.01 Aligned_cols=381 Identities=11% Similarity=0.085 Sum_probs=229.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC
Q 005474 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250 (695)
Q Consensus 171 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 250 (695)
....+...|++++|.+++.+.++.. +.+...|.+|-..|-..|+.+++...+-..-.. .+-|...|..+.....+.|+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhccc
Confidence 3344455599999999999998773 457788999999999999999998776444332 23477889999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----hHHHHHHHHHhcCChHHHHH
Q 005474 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI----TYNNLLDTMGRAKRPWQVKT 326 (695)
Q Consensus 251 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~ 326 (695)
++.|.-.|.++++.. +++...+---+..|-+.|+...|.+-|.++.+...+.|.. ....++..+...++.+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999875 5566666667788999999999999999998864322222 22334556667777788888
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 005474 327 IYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405 (695)
Q Consensus 327 ~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 405 (695)
.++..... +-..+...++.++..|.+...++.|......+......+|..-+..- .. ++ .+- ..+.... .+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~~-~~-~~~-~~~~~~~-~~ 373 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----ER-RR-EEP-NALCEVG-KE 373 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----hh-cc-ccc-cccccCC-CC
Confidence 87776652 22345567778888888888888888877777664333333322100 00 00 000 0000000 01
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHH
Q 005474 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF--EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483 (695)
Q Consensus 406 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~ 483 (695)
..++...+ .++-++.+....+...-+.....+..+ .-+...|.-+..+|...|++.+|+.+|..+......-+...
T Consensus 374 -~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 374 -LSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred -CCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 02222221 111122233333333333333333332 22445556666666666666666666666654433334445
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccC-----------ccccchH
Q 005474 484 CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD-----------VKKAYCN 551 (695)
Q Consensus 484 ~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~-----------~~~~~~~ 551 (695)
|.-+..++...|. ++|.+.++.+....|++..+.-.|+..+.+.| ..++|.+.+..+..+ ++..+.-
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g-~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG-NHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC-CHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 5555555555555 66666666666666666666555555555555 556666666554211 1111223
Q ss_pred HHHHHHHhcCCHHH
Q 005474 552 CLIDLCVNLNLLEN 565 (695)
Q Consensus 552 ~L~~~~~~~g~~~~ 565 (695)
...+.+...|+.++
T Consensus 531 ~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 531 HRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHhhhHHH
Confidence 44566777777665
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-09 Score=111.78 Aligned_cols=327 Identities=11% Similarity=0.104 Sum_probs=146.5
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 005474 140 NNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219 (695)
Q Consensus 140 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 219 (695)
...++..+++..+-.+-... +.|...|-.+.....+.|.+++|.-.|.+.++.. +++...+---...|-+.|+...|
T Consensus 184 EqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~A 260 (895)
T KOG2076|consen 184 EQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRA 260 (895)
T ss_pred HHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHH
Confidence 33344444444443333322 2233445555555555555555555555555442 22222333333445555555555
Q ss_pred HHHHHhchhCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005474 220 VEWFERMPSFGCDPDALTY----SSMIDAYGRAGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294 (695)
Q Consensus 220 ~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 294 (695)
.+-|.++.....+.|..-+ ..+++.+...++-+.|.+.++..... +-..+...++.++..|.+...++.|.....
T Consensus 261 m~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~ 340 (895)
T KOG2076|consen 261 METFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIV 340 (895)
T ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHH
Confidence 5555555543211111111 12233344444445555555544431 112233445555555555555555555555
Q ss_pred HHHHcCC---------------------------CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHH
Q 005474 295 EMKAIGV---------------------------KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYAS 345 (695)
Q Consensus 295 ~m~~~g~---------------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~ 345 (695)
++..... .++...+ -+.-++.+....+....+...+.+.. +.-+...|.-
T Consensus 341 ~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d 419 (895)
T KOG2076|consen 341 DDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLD 419 (895)
T ss_pred HHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHH
Confidence 5443111 1111110 11112222233333333333333333 2223444555
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcC
Q 005474 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425 (695)
Q Consensus 346 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 425 (695)
+.++|.+.|++.+|+.+|..+......-+...|.-+..+|...|.+++|.+.|+.+.... +.+...-..|-..+.+.|
T Consensus 420 ~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g 497 (895)
T KOG2076|consen 420 LADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLG 497 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcC
Confidence 555666666666666666665554333345555555666666666666666666655543 233344444555555566
Q ss_pred CHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 426 KVSEAEAMFNEMLE--------AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 426 ~~~~A~~~~~~m~~--------~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
+.++|.+.+..|.. .+..|+....-.....|.+.|+.++=+.+...|
T Consensus 498 ~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 498 NHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred CHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666666555431 122233333333444455555555544443333
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-09 Score=109.01 Aligned_cols=372 Identities=14% Similarity=0.095 Sum_probs=246.4
Q ss_pred CChHHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHH
Q 005474 143 TNPDTAALALTYFTNKLKASKE-VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDN-VTFSTLISCARMNNLPNKAV 220 (695)
Q Consensus 143 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~ 220 (695)
+++++|++.+.++.. ..|| .+.|.....+|...|+|+++.+-....++. .|+- ..+.--.+++-..|++++|+
T Consensus 129 kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred ccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHH
Confidence 359999999999987 4677 788999999999999999998887777654 3332 23333334666677777765
Q ss_pred HHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------H-HhhCC--CCCCHHHHHHHHHHH---------
Q 005474 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD--------R-ARNEK--WRIDPNAFSTLIKLY--------- 280 (695)
Q Consensus 221 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~-~~~~g--~~~~~~~~~~li~~~--------- 280 (695)
.= .|...++.++....-.-.+.+++. + +.+.+ +-|......+....+
T Consensus 204 ~D-------------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 204 FD-------------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred Hh-------------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 31 122222222222221112222221 1 11111 122222222222111
Q ss_pred --------------HH--cC---ChHHHHHHHHHHHHcC-CCC--C---------HHhHHHHHHHHHhcCChHHHHHHHH
Q 005474 281 --------------GT--AG---NFDGCLNVYEEMKAIG-VKP--N---------MITYNNLLDTMGRAKRPWQVKTIYK 329 (695)
Q Consensus 281 --------------~~--~g---~~~~A~~~~~~m~~~g-~~p--~---------~~~~~~li~~~~~~g~~~~a~~~~~ 329 (695)
.. .+ .+.+|.+.+.+-.... ..+ + ..+...-...+.-.|+.-.|..-|+
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 10 11 2333333333221100 011 1 1111111222445688899999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC
Q 005474 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409 (695)
Q Consensus 330 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 409 (695)
..++....++. .|--+..+|....+.++..+.|++..+.+.. +..+|..=.+.+.-.+++++|..=|++..... +-
T Consensus 351 ~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--pe 426 (606)
T KOG0547|consen 351 AAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--PE 426 (606)
T ss_pred HHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--hh
Confidence 99987644333 2777788899999999999999999887655 55566666777778889999999999998865 55
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCC-------H-
Q 005474 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-------D- 481 (695)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-------~- 481 (695)
+...|..+..+.-+.+++++++..|++.++. ++.-+..|+.....+...++++.|.+.|+..++. .|+ .
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~ 503 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAA 503 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccch
Confidence 6777888888888999999999999999885 5557889999999999999999999999988754 332 1
Q ss_pred -HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc
Q 005474 482 -RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 541 (695)
Q Consensus 482 -~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~ 541 (695)
.+-..++.. .-.++ .+|..+++++.+++|.-..+...|+....++| ..+||+++|++.
T Consensus 504 plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~-~i~eAielFEks 563 (606)
T KOG0547|consen 504 PLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG-KIDEAIELFEKS 563 (606)
T ss_pred hhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 122222211 12245 99999999999999999999999998888888 889999999864
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-10 Score=106.36 Aligned_cols=270 Identities=18% Similarity=0.168 Sum_probs=147.9
Q ss_pred cCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH------HHHHHHHHHHHcCCh
Q 005474 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN------AFSTLIKLYGTAGNF 286 (695)
Q Consensus 213 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~------~~~~li~~~~~~g~~ 286 (695)
.++.++|+++|-+|.+.. +-+..+--+|.+.|-+.|.+|.|+++++.+.++ ||.. +...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 456677777777776521 113334445666666677777777777766653 3321 223344445555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 005474 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366 (695)
Q Consensus 287 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 366 (695)
|.|+++|..+.+.|. .-...... |+..|-+..++++|+++-+++
T Consensus 124 DRAE~~f~~L~de~e-fa~~Alqq-----------------------------------Ll~IYQ~treW~KAId~A~~L 167 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQ-----------------------------------LLNIYQATREWEKAIDVAERL 167 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHH-----------------------------------HHHHHHHhhHHHHHHHHHHHH
Confidence 555555555554321 12233344 444455555555555554444
Q ss_pred HHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 005474 367 KEKGMQLSV----TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442 (695)
Q Consensus 367 ~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 442 (695)
.+.+.++.. ..|.-|...+....+.+.|..++.+..+.+ +..+..-..+.+.+...|+++.|.+.++...+.+.
T Consensus 168 ~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 168 VKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNP 245 (389)
T ss_pred HHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh
Confidence 443322221 223344444555566666777776666554 33444444555666677777777777777776554
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHhh
Q 005474 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLE 522 (695)
Q Consensus 443 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 522 (695)
.--..+...|..+|...|+.++....+.++.+....++.....+=+ .....|.++|..++.+-....|+.-.+..++.+
T Consensus 246 ~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~l-ie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 246 EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADL-IELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHH-HHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 4445566677777777777777777777776543333333211111 123445566666666666667776666666665
Q ss_pred hhc
Q 005474 523 EQD 525 (695)
Q Consensus 523 ~~~ 525 (695)
...
T Consensus 325 ~l~ 327 (389)
T COG2956 325 HLA 327 (389)
T ss_pred hhc
Confidence 544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.9e-10 Score=107.02 Aligned_cols=295 Identities=11% Similarity=0.119 Sum_probs=230.1
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 005474 169 NVTMKVFRK--CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246 (695)
Q Consensus 169 ~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 246 (695)
..+..++.+ .|+|.+|+++..+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.+.-+.--.++...+-+......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 445555543 689999999998877765332 33455555678889999999999999887533566777788888899
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HhHHHHHHHHHhcC
Q 005474 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM-------ITYNNLLDTMGRAK 319 (695)
Q Consensus 247 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g 319 (695)
..|+++.|..-++++.+.+ +.++.+......+|.+.|++.+...++.+|.+.|.--|. .+|+.+++-....+
T Consensus 165 ~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 165 NRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred hCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999998876 678889999999999999999999999999998865443 46777777766666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005474 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399 (695)
Q Consensus 320 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 399 (695)
..+.-...++..... .+-+...-.+++.-+.++|+.++|.++..+..+++..+... ..-.+.+-++.+.-++..+
T Consensus 244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHH
Confidence 666666666665432 23456666778888999999999999999998887766622 2234566777777777766
Q ss_pred HhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 400 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
.-.+.. +.+...+.+|...|.+++.+.+|...|+...+ ..|+..+|+.+..+|.+.|+..+|.++.++...
T Consensus 319 ~~l~~h--~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 319 KWLKQH--PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHhC--CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 655443 44557888999999999999999999998877 568999999999999999999999999988763
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.5e-11 Score=121.38 Aligned_cols=284 Identities=13% Similarity=0.060 Sum_probs=184.9
Q ss_pred ChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCChHHHHH-
Q 005474 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK--WRIDPNAFSTLIKLYGTAGNFDGCLN- 291 (695)
Q Consensus 215 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~- 291 (695)
+..+|+..|+++... +.-+..+...+..+|...+++++|+++|+.+.+.. ..-+..+|.+.+.-+-+. -++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 346777777774443 22234566667777777788888888887776542 112455666666544321 1222
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 005474 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370 (695)
Q Consensus 292 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 370 (695)
+-+++.+.. +-...+|.++.+.|.-+++.+.|++.|++..+.. | ...+|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 222233321 2256778888888888888888888887777643 4 5677777777777777788888887776654
Q ss_pred CCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 005474 371 MQLSVTLYN---TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447 (695)
Q Consensus 371 ~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 447 (695)
|..+|| -|.-.|.+.++++.|+-.|+...+.+ +.+.+....+...+-+.|+.|+|++++++......+ |+.
T Consensus 485 ---~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 485 ---DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred ---CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 444443 45667778888888888888777755 556666677777777788888888888877764322 444
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH
Q 005474 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY 515 (695)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~ 515 (695)
.--..+..+...+++++|+..|+++++. .|+.. .|..+...|.+.|. +.|..-|--+..++|.-..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 4444555666777888888888887743 66544 46666667777777 7777777777777776544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-10 Score=119.81 Aligned_cols=283 Identities=13% Similarity=0.106 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHhchhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005474 180 DLDKAERLFDDMLDRGVKPDN-VTFSTLISCARMNNLPNKAVEWFERMPSFG--CDPDALTYSSMIDAYGRAGNVEMAFG 256 (695)
Q Consensus 180 ~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~ 256 (695)
+..+|+.+|..+.+. .+|. ....-+-.+|...+++++|.++|+.+.+.. ..-+..+|.+.+-.+-+. -++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 346677777665443 2233 333334456777777777777777666532 112556666665544321 1222
Q ss_pred HH-HHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005474 257 LY-DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334 (695)
Q Consensus 257 ~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 334 (695)
.+ +.+.+.. +-.+.+|-++.++|.-.++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+.
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~- 483 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG- 483 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-
Confidence 22 2222222 445677777777777777777777777777764 33 566777777777777777777777776655
Q ss_pred CCCCCHHHHH---HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCH
Q 005474 335 GLSPNWNTYA---SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411 (695)
Q Consensus 335 ~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 411 (695)
.|...|+ -+...|.+.++++.|+-.|++..+.+.. +.+....+...+.+.|+.++|++++++..... +.|+
T Consensus 484 ---~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~ 557 (638)
T KOG1126|consen 484 ---VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNP 557 (638)
T ss_pred ---CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCc
Confidence 2333333 4566677777777777777777776544 55555666777777778888888887777655 3444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCC
Q 005474 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480 (695)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 480 (695)
..--..+..+...++.++|++.++++++ +.| +...|..+...|.+.|+.+.|+.-|.-|.+...++.
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 4444445556667777888888888777 344 455666777778888888888877777775544443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-08 Score=101.26 Aligned_cols=258 Identities=12% Similarity=0.071 Sum_probs=205.2
Q ss_pred HHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCC
Q 005474 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW--RIDPNAFSTLIKLYGTAGN 285 (695)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~ 285 (695)
.++....+.+++++-.+.....|+.-+...-+....+.-...++++|+.+|+++.+... --|..+|..++ |.+..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 46667778889988888888888776666556666666778899999999999998741 12556776665 333332
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 005474 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365 (695)
Q Consensus 286 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 365 (695)
- .+..+-+-...--+--..|+..+.+.|.-.++.++|...|++..+.+. .....|+.+..-|...++...|.+-++.
T Consensus 313 s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 S--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred H--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1 122222221111123456788888999999999999999999998753 2567888899999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 005474 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445 (695)
Q Consensus 366 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 445 (695)
..+-+.. |-..|..|.++|.-.+...-|+-.|++..+-. +.|...|.+|.++|.+.++.++|.+.|.+....|- .+
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te 465 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TE 465 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cc
Confidence 9987554 88899999999999999999999999998854 66899999999999999999999999999998653 36
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 446 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
...|..|.+.|-+.++.++|.+.|++-++
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 68899999999999999999999987664
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.7e-08 Score=93.94 Aligned_cols=287 Identities=15% Similarity=0.060 Sum_probs=211.8
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhCCChHHHH
Q 005474 283 AGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT-YASLLRAYGRARYGEDTL 360 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~ 360 (695)
.++...|...+-.+.... ++-|+.....+...+...|+.++|...|+.....+ |+..+ .....-.+.+.|++++..
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHH
Confidence 455555555544443332 44567788888999999999999999999887642 33322 112222345678888887
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005474 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440 (695)
Q Consensus 361 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (695)
.+...+....- -+...|-.-........+++.|+.+-++..+.+ ..+...|..-...+...|+.++|.-.|+..+.
T Consensus 287 ~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~- 362 (564)
T KOG1174|consen 287 ALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQM- 362 (564)
T ss_pred HHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHh-
Confidence 77777765421 133444444455566788999999998888765 45666666666778889999999999999887
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHH-HHHhcC--CHHHHHHHHHHHHHcCCChhHH
Q 005474 441 GFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQT--PKEELGKLVECVEKSNSKLGYV 516 (695)
Q Consensus 441 g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll-~~~~~~--~~~~a~~~~~~~~~~~p~~~~~ 516 (695)
+.| +...|..|+..|...|++.+|..+-+..... +.-+..+...+. .+|... +.+.|.+++++..+++|.+..+
T Consensus 363 -Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 363 -LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred -cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence 455 7899999999999999999999888876532 222444444442 344433 3499999999999999999999
Q ss_pred HHHHhhhhcchhhHHHHHHHHHHhc-ccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Q 005474 517 VKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEV 578 (695)
Q Consensus 517 ~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~ 578 (695)
+..+++.+...| ..+.+..++++. ...+|....+.|++.+...+.+.+|...|..++...+
T Consensus 441 V~~~AEL~~~Eg-~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 441 VNLIAELCQVEG-PTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 999998777667 889999999765 5668888889999999999999999999999987653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-10 Score=119.21 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005474 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451 (695)
Q Consensus 372 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 451 (695)
.|+..+|.+++..-...|+.+.|..++.+|++.|. +.+..-|-.|+-+ .++..-+..++..|.+.|+.|+..|+..
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf-pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF-PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC-Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHH
Confidence 57888888888888888999999999999998886 6777766677654 7888888888888888899999999888
Q ss_pred HHHHHHHcCC
Q 005474 452 LIQCYGKAQR 461 (695)
Q Consensus 452 li~~~~~~g~ 461 (695)
.+..+.+.|.
T Consensus 277 yvip~l~N~~ 286 (1088)
T KOG4318|consen 277 YVIPQLSNGQ 286 (1088)
T ss_pred HHHhhhcchh
Confidence 8887777555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-07 Score=89.29 Aligned_cols=431 Identities=12% Similarity=0.108 Sum_probs=304.5
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCC-HHHHHHH
Q 005474 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD-ALTYSSM 241 (695)
Q Consensus 163 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 241 (695)
-+...|-....-=..++++..|..+|+..+.-. ..+...|--.+.+=.++..++.|..++++.+.. -|- ...|--.
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY 147 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence 355556665555667889999999999998754 346677777888888999999999999998874 333 3345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 005474 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321 (695)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 321 (695)
+.+=-..|++..|.++|++-.+- .|+...|++.|+.=.+...++.|..++++.+-. .|++.+|--....=.+.|..
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcH
Confidence 66666789999999999998874 899999999999999999999999999999864 69999999998888999999
Q ss_pred HHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHH-
Q 005474 322 WQVKTIYKEMTDN-GL-SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS-VTLYNTLLAMCADVGYTDEAFEI- 397 (695)
Q Consensus 322 ~~a~~~~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~- 397 (695)
..+..+|....+. |- .-+...+.++...-.++..++.|.-+|+-.++.-.+-. ...|..+..---+-|+.....+.
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 9999999987753 11 11234455555555677889999999998877533221 34555555444455664443333
Q ss_pred -------HHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-----HH---HHcC
Q 005474 398 -------FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL--FVLTSLIQ-----CY---GKAQ 460 (695)
Q Consensus 398 -------~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~-----~~---~~~g 460 (695)
++.+.+.+ +-|-.+|--.++.-...|+.+...++|++.+.. ++|-. ..|.-.|- ++ ....
T Consensus 304 v~KRk~qYE~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred hhhhhhHHHHHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555554 568888888888888899999999999999874 44522 22322221 11 3468
Q ss_pred CHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhc----CCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHH
Q 005474 461 RTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQ----TPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 534 (695)
Q Consensus 461 ~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~----~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA 534 (695)
+.+.+.++++..++ +.| ...||.-+--.+++ +.+ ..|.+++..++..-|.+-.+-..+ ....+.+ ..|..
T Consensus 381 d~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YI-elElqL~-efDRc 456 (677)
T KOG1915|consen 381 DVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYI-ELELQLR-EFDRC 456 (677)
T ss_pred hHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHH-HHHHHHh-hHHHH
Confidence 89999999999886 456 45577766555543 333 888999999998888865443222 2222224 56778
Q ss_pred HHHHHhc-ccCcc-ccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcccCccccCccceeecccc-CChHHHHHHHHHHHH
Q 005474 535 TELFNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKS-LSLGAALTALHIWIN 611 (695)
Q Consensus 535 ~~l~~~~-~~~~~-~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~w~~~l~~-~s~G~~~~a~~~w~~ 611 (695)
+.++++. ...|. -.+|.-.+..-...|+.++|+.+|+.|+.... ... -...|+.-+.. .+.|.-+.|...+..
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~---ldm-pellwkaYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA---LDM-PELLWKAYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc---ccc-HHHHHHHhhhhhhhcchHHHHHHHHHH
Confidence 8888765 44454 34788888888899999999999999987632 111 23456532222 355666655544433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.6e-09 Score=111.49 Aligned_cols=247 Identities=16% Similarity=0.164 Sum_probs=177.2
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHH
Q 005474 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239 (695)
Q Consensus 160 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 239 (695)
++.||.++|..+|.-|+..|+.+.|- +|.-|.-+..+.+...|+.++.+....++.+.+. .|...||.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 47899999999999999999999998 9999988777778899999999998888887775 68899999
Q ss_pred HHHHHHHhcCCHHH---HHHHHHHHh----hCCCCCCHHHH--------------HHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 240 SMIDAYGRAGNVEM---AFGLYDRAR----NEKWRIDPNAF--------------STLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 240 ~li~~~~~~g~~~~---A~~~~~~~~----~~g~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
.|..+|...||+.. +.+.++.+. ..|+.....-+ ...+....-.|-++.+++++..+..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99999999999654 333222222 22321111111 1223333445566666666655532
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 005474 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378 (695)
Q Consensus 299 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 378 (695)
.... . ++..+++-+... ..-.+++.+......-.++..+|.++++.-..+|+.+.|..++.+|+++|++.+..-|
T Consensus 168 sa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 168 SAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 2110 0 111123333322 2333444444333222589999999999999999999999999999999999998888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCH
Q 005474 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427 (695)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 427 (695)
-.|+-+ .++...++.+++-|.+.|+ .|+..|+...+..+..+|..
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv-~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGV-QPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcC-CCCcchhHHHHHhhhcchhh
Confidence 888766 8889999999999999996 99999999888777776653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-08 Score=112.04 Aligned_cols=265 Identities=10% Similarity=-0.011 Sum_probs=182.1
Q ss_pred CHHHHHHHHHHHHH-----cCChhHHHHHHHhchhCCCCCC-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHhh
Q 005474 199 DNVTFSTLISCARM-----NNLPNKAVEWFERMPSFGCDPD-ALTYSSMIDAYG---------RAGNVEMAFGLYDRARN 263 (695)
Q Consensus 199 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~ 263 (695)
+...|...+.+... .+..++|++.|++..+. .|+ ...|..+..+|. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45555555554322 12457888888888774 453 455655555443 22457899999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 005474 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343 (695)
Q Consensus 264 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 343 (695)
.. +-+..++..+...+...|++++|...|++..+.+. .+...+..+...+...|++++|...+++..+.... +...+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 75 55778888888888999999999999999988742 24667788888899999999999999999886533 22233
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHH
Q 005474 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423 (695)
Q Consensus 344 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 423 (695)
..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...+.++.... ..+....+.+...|+.
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhc
Confidence 33444566788999999999988765433345566777888889999999999998876643 2334445556666777
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhC
Q 005474 424 RGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475 (695)
Q Consensus 424 ~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 475 (695)
.| ++|...++.+.+. .-.+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 77 4777777777652 112222222 33445556777777666 777654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.7e-09 Score=113.17 Aligned_cols=252 Identities=12% Similarity=0.012 Sum_probs=179.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 005474 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT---------AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319 (695)
Q Consensus 249 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 319 (695)
+++++|.+.|++..+.. +-+...|..+..+|.. .+++++|...+++..+.... +...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 34689999999999874 3345566666655542 24478999999999987532 6778888888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005474 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399 (695)
Q Consensus 320 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 399 (695)
++++|...|++..+.+. .+...+..+...|...|++++|...+++..+.... +...+..++..+...|++++|+..++
T Consensus 353 ~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999998652 34667888889999999999999999999887554 22333344555777899999999999
Q ss_pred HhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHhhh-CCC
Q 005474 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPE-LGI 477 (695)
Q Consensus 400 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~ 477 (695)
++..... +.+...+..+..++...|+.++|...+.++... .|+ ....+.+...|+..| ++|...++.+.+ ...
T Consensus 431 ~~l~~~~-p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 431 ELRSQHL-QDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHhcc-ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 9876541 224555777888889999999999999988663 343 344555556677777 588888887763 233
Q ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005474 478 TPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 511 (695)
Q Consensus 478 ~pd~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~p 511 (695)
.+....+..++ +.-.|+.+...+++++.+.+.
T Consensus 506 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~ 537 (553)
T PRK12370 506 IDNNPGLLPLV--LVAHGEAIAEKMWNKFKNEDN 537 (553)
T ss_pred hhcCchHHHHH--HHHHhhhHHHHHHHHhhccch
Confidence 34333333333 344566455555577765543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.1e-09 Score=100.31 Aligned_cols=165 Identities=14% Similarity=0.052 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 005474 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314 (695)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 314 (695)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3444555555555566666666555555432 23344555555555555555555555555554321 133344444444
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005474 315 MGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393 (695)
Q Consensus 315 ~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (695)
+...|++++|.+.+++....... .....+..+...+...|++++|.+.|++..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 55555555555555554432111 11222333333444444444444444444332211 22333333444444444444
Q ss_pred HHHHHHHhH
Q 005474 394 AFEIFEDMK 402 (695)
Q Consensus 394 A~~~~~~m~ 402 (695)
|...+++..
T Consensus 188 A~~~~~~~~ 196 (234)
T TIGR02521 188 ARAYLERYQ 196 (234)
T ss_pred HHHHHHHHH
Confidence 444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-06 Score=89.52 Aligned_cols=193 Identities=10% Similarity=0.113 Sum_probs=118.1
Q ss_pred cCChHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc
Q 005474 318 AKRPWQVKTIYKEMTDNGLSP------NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS---VTLYNTLLAMCADV 388 (695)
Q Consensus 318 ~g~~~~a~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~ 388 (695)
.|+..+-...+.+..+. +.| -...|..+.+.|-..|+++.|..+|++..+...+-- ..+|..-..+-.++
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 34555666666666543 222 134577788889999999999999998877543311 23455555555667
Q ss_pred CCHHHHHHHHHHhHhCCC----------CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005474 389 GYTDEAFEIFEDMKSSEN----------CQ------PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452 (695)
Q Consensus 389 g~~~~A~~~~~~m~~~~~----------~~------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 452 (695)
.+++.|+++++....... -+ .+...|...++.--..|-++....+++++++..+. ++...-..
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 788888888877654211 00 01234555566666778888888888888885543 22222222
Q ss_pred HHHHHHcCCHhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhc----CCHHHHHHHHHHHHHcCCC
Q 005474 453 IQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQ----TPKEELGKLVECVEKSNSK 512 (695)
Q Consensus 453 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~~~----~~~~~a~~~~~~~~~~~p~ 512 (695)
...+-.+..++++.+++++-+..---|+.. .|+..+.-+.+ ...+.+..+|+++.+.-|.
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 333456677788888888766543345543 45554443322 2228888888888876553
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.8e-09 Score=100.06 Aligned_cols=201 Identities=9% Similarity=0.028 Sum_probs=151.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005474 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348 (695)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 348 (695)
....+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 45677778888889999999999999887753 22466777788888888999999999988877643 35566777788
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCH
Q 005474 349 AYGRARYGEDTLSVYREMKEKGMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427 (695)
Q Consensus 349 ~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 427 (695)
.|...|++++|.+.|++..+.... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCH
Confidence 888888888888888888764322 234456667777888888888888888887654 34566777788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
++|.+.+++..+. ...+...+..++..+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888888775 234566666777777788888888888777653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.1e-08 Score=90.15 Aligned_cols=402 Identities=13% Similarity=0.094 Sum_probs=193.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCChhHHHHHH
Q 005474 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWF 223 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~ 223 (695)
+.+|++++....... +.+......+..+|-...++..|-..|+.+-.. .|...-|...- ..+-+.+.+.+|+.+.
T Consensus 26 y~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 26 YADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred HHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 555555555544432 224444555555555555566665555555443 33443333222 2444455555555555
Q ss_pred HhchhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 005474 224 ERMPSFGCDPDALTYSSMIDAY--GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301 (695)
Q Consensus 224 ~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 301 (695)
..|... ++...-..-+.+. ...+++..+..+++++...| +..+.+...-...+.|++++|++-|+...+.+-
T Consensus 102 ~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 102 FLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 555431 1111111111111 12344555555555544322 233333333334455555555555555544332
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 005474 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT----YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377 (695)
Q Consensus 302 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 377 (695)
--....||.-+. ..+.|+++.|.+...+++++|++..... -+-.+++-. .|+ -. .|...+ -+..
T Consensus 176 yqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgN---t~----~lh~Sa---l~eA 243 (459)
T KOG4340|consen 176 YQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGN---TL----VLHQSA---LVEA 243 (459)
T ss_pred CCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccc---hH----HHHHHH---HHHH
Confidence 223344443332 2344555555555555555554311100 000000000 000 00 000000 0123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005474 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457 (695)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 457 (695)
+|.-...+.+.|+++.|.+-+..|.-......|++|...+.-.= -.+++.+..+-++-+.+.+. -...||..++-.||
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHh
Confidence 33334456678889999988888865443366777776554221 23445555555566665432 25678888888899
Q ss_pred HcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH--HHHHHHHHHHHHc-----------------CCChhHHH
Q 005474 458 KAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK--EELGKLVECVEKS-----------------NSKLGYVV 517 (695)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~-----------------~p~~~~~~ 517 (695)
+..-++-|-.++-+-......- +...| -++.++.-+.. +++.+-++.+.+. +-++..+.
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R 400 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIR 400 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 9998888888886643222221 22222 34555554443 6666654433211 00111111
Q ss_pred HHHhhhhcchhhHHHHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcccCccccCccceeecc
Q 005474 518 KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHL 594 (695)
Q Consensus 518 ~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~w~~~l 594 (695)
+.+- .++++.+++ -++.-+..|.+|+..++..++++|..-.++ ......|++++
T Consensus 401 ~ai~--------~Yd~~LE~Y--------LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef-------C~ehd~WkLNv 454 (459)
T KOG4340|consen 401 KAVN--------EYDETLEKY--------LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF-------CNDHDVWKLNV 454 (459)
T ss_pred HHHH--------HHHHHHHHH--------HHHHHHHHHhhccccccHHHHHHHHHHHhh-------hcccceeeecc
Confidence 1110 123333322 124456779999999999999999886654 23456788754
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-07 Score=96.62 Aligned_cols=285 Identities=8% Similarity=0.017 Sum_probs=214.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 005474 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310 (695)
Q Consensus 231 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 310 (695)
..-+........+-+...+++.+..++.+.+.+.. ++....+..-|..+...|+..+-..+=.+|++.- +-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 34455666666677778889999999999988765 6677777777888889999888888888888763 235788888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 005474 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS-VTLYNTLLAMCADVG 389 (695)
Q Consensus 311 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g 389 (695)
+.-.|...|++.+|++.|.+....... =...|-.+...|+-.|..|+|+..+...-+.=.... +..| +.--|.+.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhc
Confidence 888888889999999999887654321 235677788888888999999988887655311111 1222 334577788
Q ss_pred CHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHHcCCHh
Q 005474 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA--GFE----PNLFVLTSLIQCYGKAQRTD 463 (695)
Q Consensus 390 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~----p~~~~~~~li~~~~~~g~~~ 463 (695)
+++.|.+.|.+..... +.|+...+-+.-.....+.+.+|..+|+..+.. .+. .-..+++.|..+|.+.++++
T Consensus 395 n~kLAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 9999999998887643 778888888877777788899999999887631 011 13456788888999999999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhh
Q 005474 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEE 523 (695)
Q Consensus 464 ~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~ 523 (695)
+|+..+++.+... .-|..++.++.-.+...|. +.|...|.+...++|++..+..+|+.+
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999887542 2366778888888888888 999999999999999887777777653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-11 Score=84.13 Aligned_cols=49 Identities=33% Similarity=0.607 Sum_probs=35.5
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005474 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211 (695)
Q Consensus 163 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 211 (695)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5677777777777777777777777777777777777777777777665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-06 Score=90.79 Aligned_cols=436 Identities=13% Similarity=0.080 Sum_probs=268.8
Q ss_pred HhhHHHHHHHhCCCCCHHHH-HHHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005474 116 EDDVFSVLRCLGDDFLEQDC-VIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194 (695)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 194 (695)
-....++|..++..+..... -..++.+++-++|.+......+. ...+.++|.++.-.+...+++++|++.|......
T Consensus 27 LK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 27 LKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred HHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 33445566655544332221 14678888899999988887663 3567889999998888899999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHHH
Q 005474 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK-WRIDPNAF 273 (695)
Q Consensus 195 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~ 273 (695)
+ +-|...|.-+--.-++.++++.....-..+.+.. +-....|..+..++.-.|++..|..++++..+.. -.|+...|
T Consensus 105 ~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~ 182 (700)
T KOG1156|consen 105 E-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDY 182 (700)
T ss_pred C-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHH
Confidence 3 3355667666666667777777776666665531 2245667778888888899999999999888764 24666665
Q ss_pred HHHH------HHHHHcCChHHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005474 274 STLI------KLYGTAGNFDGCLNVYEEMKAIGVKPNMIT-YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346 (695)
Q Consensus 274 ~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 346 (695)
.-.. ....+.|..++|++.+..-...- .|... -.+-...+.+.+++++|..++..++..+ ||..-|...
T Consensus 183 e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~ 258 (700)
T KOG1156|consen 183 EHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEG 258 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHH
Confidence 4433 34456788888888887765431 13332 2344667889999999999999999865 666666554
Q ss_pred HH-HHHhCCChHHHH-HHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHH
Q 005474 347 LR-AYGRARYGEDTL-SVYREMKEKG---MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421 (695)
Q Consensus 347 i~-~~~~~g~~~~A~-~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 421 (695)
+. ++.+-.+..++. .+|....+.- -.|-....+ ......-.+..-.++..+.+.|+ ++ ++..+...|
T Consensus 259 l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls----vl~~eel~~~vdkyL~~~l~Kg~-p~---vf~dl~SLy 330 (700)
T KOG1156|consen 259 LEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS----VLNGEELKEIVDKYLRPLLSKGV-PS---VFKDLRSLY 330 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH----HhCcchhHHHHHHHHHHHhhcCC-Cc---hhhhhHHHH
Confidence 44 443444444444 5666554431 111111111 11111123344455566666663 22 344444444
Q ss_pred HHcCCHHHHHHHHHHHHH----CC----------CCCCHHHHH--HHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH-HH
Q 005474 422 SCRGKVSEAEAMFNEMLE----AG----------FEPNLFVLT--SLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FC 484 (695)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~----~g----------~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~ 484 (695)
-.-...+-..++.-.+.. .| -+|....|+ .++..|-+.|+++.|..+++..+ +..|+.+ .|
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI--dHTPTliEly 408 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI--DHTPTLIELY 408 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh--ccCchHHHHH
Confidence 332222211222222211 11 145555444 56778899999999999999988 4478765 56
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccCccccchHHH----------
Q 005474 485 GCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCL---------- 553 (695)
Q Consensus 485 ~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~~~L---------- 553 (695)
..-.+.+.+.|. ++|..+++.+.+++-.+..+-.--+......+ ..++|.++......... ...+.|
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn-~i~eA~~~~skFTr~~~-~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRAN-EIEEAEEVLSKFTREGF-GAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcc-ccHHHHHHHHHhhhccc-chhhhHHHhhhHHHhH
Confidence 666678889999 99999999998877543322212222222224 67889888766644332 222222
Q ss_pred --HHHHHhcCCHHHHHHHHH
Q 005474 554 --IDLCVNLNLLENACKLLE 571 (695)
Q Consensus 554 --~~~~~~~g~~~~A~~~l~ 571 (695)
+.+|.++|++-+|.+=|.
T Consensus 487 E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 487 EDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 346667777666654443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.4e-11 Score=83.33 Aligned_cols=48 Identities=40% Similarity=0.697 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 005474 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316 (695)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 316 (695)
|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||++|+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 444444444444444444444444444444444444444444444443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-07 Score=96.95 Aligned_cols=290 Identities=15% Similarity=0.143 Sum_probs=203.6
Q ss_pred HHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHc--
Q 005474 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMN-- 213 (695)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~-- 213 (695)
.++...+++++|++.++.-... +.............+.+.|+.++|..+|..+++++ |+...|...+. +..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 4566778899999999886654 33445567778889999999999999999999984 56666555544 44222
Q ss_pred ---CChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 005474 214 ---NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289 (695)
Q Consensus 214 ---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 289 (695)
...+...++|+++...- |.......+.-.+.....+ ..+...+..+...|++ .+|+.|-..|......+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 24677788888886642 3333333332222222223 3445566777777754 4566666667655555566
Q ss_pred HHHHHHHHHc----C----------CCCCH--HhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 005474 290 LNVYEEMKAI----G----------VKPNM--ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGR 352 (695)
Q Consensus 290 ~~~~~~m~~~----g----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~ 352 (695)
.+++..+... + -.|+. .++..+...|...|++++|.+.+++.++.. |+ +..|..-...|-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence 6666665432 1 12333 344666778889999999999999999864 44 6778888899999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCH--------HHHHHHHHHHHHc
Q 005474 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS--------WTFSSMITICSCR 424 (695)
Q Consensus 353 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--------~~~~~li~~~~~~ 424 (695)
.|++.+|.+.++........ |...-+-.+..+.++|++++|.+++....+.+. .|-. ........+|.+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887655 777777788889999999999999998877663 2322 1124556788999
Q ss_pred CCHHHHHHHHHHHHH
Q 005474 425 GKVSEAEAMFNEMLE 439 (695)
Q Consensus 425 g~~~~A~~~~~~m~~ 439 (695)
|++..|++.|....+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999988887766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-09 Score=100.34 Aligned_cols=222 Identities=15% Similarity=0.106 Sum_probs=122.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005474 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390 (695)
Q Consensus 311 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 390 (695)
|..+|.+.|.+.+|.+.|+.-.+.. |-..||..|-..|.+..+.+.|+.+|.+-.+. .+-|+....-+.+.+...++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 3444455555555555554444332 33444555555555555555555555555443 12233333334555556666
Q ss_pred HHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 005474 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470 (695)
Q Consensus 391 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 470 (695)
.++|.++|+...+.. ..++....++...|.-.++.+-|+++++++.+.|+. +...|+.+.-+|.-.+++|-++.-|+
T Consensus 306 ~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 666666666666554 445555556666666667777777777777776654 55666666666666777777777777
Q ss_pred HhhhCCCCCCHH--HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHH
Q 005474 471 RLPELGITPDDR--FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 539 (695)
Q Consensus 471 ~m~~~g~~pd~~--~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~ 539 (695)
+....--.|+.. +|.-+.....-.|+ .-|.+.|+-....+|++...++.|+-.....| ..++|+.+++
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G-~i~~Arsll~ 453 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSG-DILGARSLLN 453 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcC-chHHHHHHHH
Confidence 666444444332 34444444444555 55666666666666666666665554333333 3444444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-07 Score=94.71 Aligned_cols=282 Identities=10% Similarity=0.008 Sum_probs=212.4
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005474 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345 (695)
Q Consensus 266 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 345 (695)
..-+.........-+...+++.+..++++...+.. ++....+..=|..+...|+..+-..+=..|.+.- +....+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 34566667777778888999999999999988763 3456666666778888888888777777777753 346788988
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcC
Q 005474 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425 (695)
Q Consensus 346 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 425 (695)
+.-.|...|+..+|++.|.+....+.. =...|-.+..+|+-.|..++|+.-+....+.- +-...-+--+.--|.+.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhc
Confidence 888888889999999999987655322 23568888899999999999999887765431 111112222333478889
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhh--CCCCC----CHHHHHHHHHHHhcCCH-H
Q 005474 426 KVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPE--LGITP----DDRFCGCLLNVMTQTPK-E 497 (695)
Q Consensus 426 ~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p----d~~~~~~ll~~~~~~~~-~ 497 (695)
+++.|.++|.+... +.| |+..++-+.-.....+.+.+|..+|+..+. ..+.+ -..+++-|..+|.+.+. +
T Consensus 395 n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 99999999998887 445 777888887777788999999999997762 11111 33467778888888888 9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCccccchHHHHH
Q 005474 498 ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLID 555 (695)
Q Consensus 498 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~~~~~L~~ 555 (695)
+|...+++.....|.+..+...+|..+...| .++.|.+.|++. -..|+..+...++.
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llg-nld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLG-NLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhc-ChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 9999999999999999999999998888888 889999988665 55666654444443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-07 Score=100.75 Aligned_cols=290 Identities=16% Similarity=0.170 Sum_probs=197.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHH-HHHHHHHhc-
Q 005474 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNV-TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS-SMIDAYGRA- 248 (695)
Q Consensus 172 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~- 248 (695)
..++...|++++|++.++.-... -+|.. ........+.+.|+.++|..++..+.+++ |+...|. .+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 34478899999999999775544 34554 44556668999999999999999999875 5555544 444444222
Q ss_pred ----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHH
Q 005474 249 ----GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF-DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323 (695)
Q Consensus 249 ----g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 323 (695)
.+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|++ .+|+.|-..|....+..-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 25677788888887653 3333332222222222233 2445566677777764 356666666666666666
Q ss_pred HHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005474 324 VKTIYKEMTDN----G----------LSPNWN--TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387 (695)
Q Consensus 324 a~~~~~~m~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 387 (695)
..+++...... + -.|... ++..+...|...|++++|++++++.++.... .+..|..-.+.+-.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence 66666665432 1 123332 4455677788899999999999988886322 36677778888999
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--H----HH--HHHHHHHHHc
Q 005474 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL--F----VL--TSLIQCYGKA 459 (695)
Q Consensus 388 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~----~~--~~li~~~~~~ 459 (695)
.|++.+|.+.++..+... .-|...-+-.+..+.+.|++++|.+++....+.+..|-. . .| .-...+|.+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD--LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred CCCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877 578888888888889999999999999888776543322 1 12 3345688888
Q ss_pred CCHhHHHHHHHHhh
Q 005474 460 QRTDDVVRALNRLP 473 (695)
Q Consensus 460 g~~~~A~~~~~~m~ 473 (695)
|++..|++.|....
T Consensus 319 ~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 319 GDYGLALKRFHAVL 332 (517)
T ss_pred hhHHHHHHHHHHHH
Confidence 99888888777654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.2e-08 Score=102.11 Aligned_cols=26 Identities=27% Similarity=0.003 Sum_probs=23.9
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHH
Q 005474 549 YCNCLIDLCVNLNLLENACKLLELGL 574 (695)
Q Consensus 549 ~~~~L~~~~~~~g~~~~A~~~l~~~~ 574 (695)
+|..|+.+|...|+++.|.++.+.+.
T Consensus 452 ~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 452 TYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 77889999999999999999998876
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-08 Score=95.87 Aligned_cols=229 Identities=12% Similarity=0.117 Sum_probs=150.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 005474 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283 (695)
Q Consensus 204 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 283 (695)
+-+-++|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-++|.+..+.+.|+.+|.+-.+.- +-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 34556777777777777777766553 4566677777777777777777777777766542 33333344556666777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 005474 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363 (695)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 363 (695)
++.++|.++|+...+.. +.++.....+...|.-.++++.|...++++.+.|+. +...|+.+.-+|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 77777777777776542 225555555666666777777777777777777764 5666666666666777777777777
Q ss_pred HHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005474 364 REMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 364 ~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (695)
.+....--.|+ ...|..+-......|++..|.+.|+-....+ ..+...+|.|.-.-.+.|++++|..+++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 76654433333 2345556666666777777777777666554 45566677666666677777777777766655
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.2e-06 Score=84.92 Aligned_cols=402 Identities=10% Similarity=0.124 Sum_probs=247.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 005474 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244 (695)
Q Consensus 166 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 244 (695)
..|-..+..+.++|++......|+..+.. -+......|...+.-....+-++-++.++++.++. ++..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 34677777778888888888888776643 22233456777777777788888888888887662 33346667777
Q ss_pred HHhcCCHHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHHcCCCCC--HHhHHHHHH
Q 005474 245 YGRAGNVEMAFGLYDRARNEK------WRIDPNAFSTLIKLYGTAGNFDG---CLNVYEEMKAIGVKPN--MITYNNLLD 313 (695)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~--~~~~~~li~ 313 (695)
+++.+++++|.+.+....... .+.+...|.-+-+...++-+.-. ...+++.+... -+| ...|+.|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 888888888888887765431 24455566666666665443322 22233333322 223 346777888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC----------------------ChHHHHHHHHHHHHcCC
Q 005474 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR----------------------YGEDTLSVYREMKEKGM 371 (695)
Q Consensus 314 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~m~~~~~ 371 (695)
.|.+.|+++.|..+|++....- ....-|+.+.++|++-. +++-.+.-|+.+.+.+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 8888888888888888766532 22333344444443211 12233333444433311
Q ss_pred -----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 005474 372 -----------QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP------DSWTFSSMITICSCRGKVSEAEAMF 434 (695)
Q Consensus 372 -----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~ 434 (695)
.-++..|..-+. ...|+..+-...+.+..+.- .| -...|..+...|-..|+++.|..+|
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v--dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV--DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc--CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 112333332222 33566777777777766531 22 2346788889999999999999999
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCC----------C-C------HHHHHHHHHHHhcC
Q 005474 435 NEMLEAGFEPN---LFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT----------P-D------DRFCGCLLNVMTQT 494 (695)
Q Consensus 435 ~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-d------~~~~~~ll~~~~~~ 494 (695)
++..+..++-- ..+|..-...=.++.+++.|+++++......-. | . ...|...++.....
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99987544321 345666666667888999999998877532211 1 1 22455555555555
Q ss_pred CH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-c-cC-ccc-cchHHHHHHHHh-c--CCHHHH
Q 005474 495 PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-S-KD-VKK-AYCNCLIDLCVN-L--NLLENA 566 (695)
Q Consensus 495 ~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~-~~-~~~-~~~~~L~~~~~~-~--g~~~~A 566 (695)
|- +....+++.+..+.--.+.++-.++..+-.+. .++++.+.+++- . .+ |.. .+|+..+..+.+ - -+.|+|
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~-yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHK-YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhH-HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 66 77777888888776555666655555444444 778888887654 2 12 332 388887765543 2 358899
Q ss_pred HHHHHHHHHcCcccC
Q 005474 567 CKLLELGLTLEVYTD 581 (695)
Q Consensus 567 ~~~l~~~~~~~~~~~ 581 (695)
+.+|+++++ +..|.
T Consensus 570 RdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPE 583 (835)
T ss_pred HHHHHHHHh-cCCHH
Confidence 999999998 44444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.7e-06 Score=84.98 Aligned_cols=452 Identities=12% Similarity=0.052 Sum_probs=284.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005474 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223 (695)
Q Consensus 144 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 223 (695)
++...+.+.+.+.+..+ ....+.....-.+...|+-++|....+.-.+.. .-+.+.|..+--.+....++++|++.|
T Consensus 22 QYkkgLK~~~~iL~k~~--eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFP--EHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHhHHHHHHHHHHhCC--ccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 47778888888777543 334444444445677899999999887776543 346678888877888888999999999
Q ss_pred HhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CC
Q 005474 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VK 302 (695)
Q Consensus 224 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 302 (695)
......+ +-|...+.-+.-.-++.|+++.....-.++.+.. +.....|..+..++.-.|++..|..++++..+.. -.
T Consensus 99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9988753 3367777777777778888888887777777653 4456788889999999999999999999998764 24
Q ss_pred CCHHhHHHHH------HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 005474 303 PNMITYNNLL------DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376 (695)
Q Consensus 303 p~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 376 (695)
|+...|.... ......|..++|.+.+..-... +......-.+-...+.+.+++++|..++..++.++ ||..
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~ 253 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNL 253 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhH
Confidence 5665554433 3456678888888777665442 22122333445667889999999999999999874 5666
Q ss_pred HHHHHHH-HHHhcCCHHHHH-HHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005474 377 LYNTLLA-MCADVGYTDEAF-EIFEDMKSSENCQPDSWTFSSMITICSCRGKV-SEAEAMFNEMLEAGFEPNLFVLTSLI 453 (695)
Q Consensus 377 ~~~~li~-~~~~~g~~~~A~-~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li 453 (695)
-|+..+. ++.+--+.-++. .+|....+. .|....-..+--......++ +..-+++..+.+.|+++-.. .+.
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~---y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~---dl~ 327 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEK---YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK---DLR 327 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhc---CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh---hhH
Confidence 5555444 443343444444 666665542 12211111111111122222 33445666777777755332 222
Q ss_pred HHHHHcCCH---hH-HHHHHHHhhhCC----------CCCCHH--HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHH
Q 005474 454 QCYGKAQRT---DD-VVRALNRLPELG----------ITPDDR--FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 516 (695)
Q Consensus 454 ~~~~~~g~~---~~-A~~~~~~m~~~g----------~~pd~~--~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~ 516 (695)
..|-.-.+. ++ +..+...+...| -.|... ++..+...+.+.|+ +.|..+++.+...-|.....
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEl 407 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIEL 407 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHH
Confidence 222211111 11 122222221111 134444 45566677788899 99999999999988987766
Q ss_pred HHHHhhhhcchhhHHHHHHHHHHhccc-CccccchH-HHHHHHHhcCCHHHHHHHHHHHHHcCcccCccc---cCcccee
Q 005474 517 VKLLLEEQDIEGDFKKEATELFNSISK-DVKKAYCN-CLIDLCVNLNLLENACKLLELGLTLEVYTDIQS---RSPTQWS 591 (695)
Q Consensus 517 ~~~l~~~~~~~g~~~~eA~~l~~~~~~-~~~~~~~~-~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~---~~~~~w~ 591 (695)
.-+=++.+...| .+++|..+++.... +....+.| --+....+.++.++|.++..+-.+.|. +... .-+.+|-
T Consensus 408 y~~KaRI~kH~G-~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf 484 (700)
T KOG1156|consen 408 YLVKARIFKHAG-LLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWF 484 (700)
T ss_pred HHHHHHHHHhcC-ChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHH
Confidence 655566655567 88999999887743 22222334 456667888999999999888776654 2221 1234454
Q ss_pred eccccCChHHHHHHHHHHHHHHHHH
Q 005474 592 LHLKSLSLGAALTALHIWINDLSKA 616 (695)
Q Consensus 592 ~~l~~~s~G~~~~a~~~w~~~~~~~ 616 (695)
. +..|.+-....-|-..+++.
T Consensus 485 ~----~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 485 Q----LEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred h----HhhhHHHHHHHHHHHHHHHH
Confidence 2 13455555555555555554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-06 Score=83.24 Aligned_cols=412 Identities=15% Similarity=0.092 Sum_probs=242.4
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 005474 140 NNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219 (695)
Q Consensus 140 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 219 (695)
-.++++++|+..+..+... ..++...+-.+.-.+.-.|.+.+|..+-.... .+.-.-..|+....+.++-++-
T Consensus 68 fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 68 FHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHH
Confidence 3456788888888887764 45666666666655566778888877654322 2333334444555666776666
Q ss_pred HHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHHcCChHHHHHHHHHHHH
Q 005474 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI-KLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 220 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~ 298 (695)
..+.+.+... ..---+|.......-.+++|+++|.+.... .|+-...|.-+ -+|.+..-++-+.++++-..+
T Consensus 141 ~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 141 LTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 6666655431 122233444444445678888888888765 35555555444 456677777888888877766
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCC
Q 005474 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-----RYGEDTLSVYREMKEKGMQL 373 (695)
Q Consensus 299 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~ 373 (695)
. ++-++...|.......+.=.-..|..-..++..++-.. | -.+.-.+++ +.-+.|++++--+.+.
T Consensus 214 q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~---- 283 (557)
T KOG3785|consen 214 Q-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH---- 283 (557)
T ss_pred h-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----
Confidence 4 22244555555444444322233333344444332110 1 123333333 2346677776655543
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCC-
Q 005474 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-------KVSEAEAMFNEMLEAGFEPN- 445 (695)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~- 445 (695)
-+..--.|+--|.+.++..+|..+.+++.- ..|-......++ +...| .+.-|.+.|+..-+.+..-|
T Consensus 284 IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P---ttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDT 358 (557)
T KOG3785|consen 284 IPEARLNLIIYYLNQNDVQEAISLCKDLDP---TTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDT 358 (557)
T ss_pred ChHhhhhheeeecccccHHHHHHHHhhcCC---CChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhccccccccc
Confidence 112222355567888999999988877642 134333333333 22222 24456666665555544333
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh-HHHHHHhhh
Q 005474 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG-YVVKLLLEE 523 (695)
Q Consensus 446 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 523 (695)
+.--.++..++.-..++|+.+.+++.....-..-|...|+ +..+....|. .+++++|-.+...+-.+. .....|+++
T Consensus 359 IpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArC 437 (557)
T KOG3785|consen 359 IPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARC 437 (557)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHH
Confidence 3334566677777778899998888887653343444444 5567777777 888888876654442333 344788888
Q ss_pred hcchhhHHHHHHHHHHhcccCccccch-HHHHHHHHhcCCHHHHHHHHHHHHHcCcccCc
Q 005474 524 QDIEGDFKKEATELFNSISKDVKKAYC-NCLIDLCVNLNLLENACKLLELGLTLEVYTDI 582 (695)
Q Consensus 524 ~~~~g~~~~eA~~l~~~~~~~~~~~~~-~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 582 (695)
+...+ ..+-|.+++-++..+.+.-+. ......|++.|.+=-|-+.|+......+.|+-
T Consensus 438 yi~nk-kP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 438 YIRNK-KPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred HHhcC-CchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 88777 678888888776555444433 44557899999988777778776666555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4e-06 Score=88.76 Aligned_cols=407 Identities=13% Similarity=0.064 Sum_probs=254.4
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCC-CHHHHH
Q 005474 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP-DALTYS 239 (695)
Q Consensus 161 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~ 239 (695)
+..|...|..+--++...|+++.+.+.|++.... ..-....|+.+-.+|...|.-..|+.+++.-....-.| |...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 5567888998888889999999999999887643 23356778888888889999889999887765433234 444444
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHhhC--C--CCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHcCC-C
Q 005474 240 SMIDAYGR-AGNVEMAFGLYDRARNE--K--WRIDPNAFSTLIKLYGTA-----------GNFDGCLNVYEEMKAIGV-K 302 (695)
Q Consensus 240 ~li~~~~~-~g~~~~A~~~~~~~~~~--g--~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~-~ 302 (695)
..-..|.+ .+.+++++..-.+++.. + -......|..+.-+|... ....++++.+++..+.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44444544 36677777766666551 1 123445555555555432 234577888888876543 3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHH
Q 005474 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTL 381 (695)
Q Consensus 303 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l 381 (695)
|++..|-. --|+-.++++.|....++..+.+-..+...|..+.-.+...+++.+|+.+.+...+. |. |......-
T Consensus 478 p~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~ 553 (799)
T KOG4162|consen 478 PLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGK 553 (799)
T ss_pred chHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhh
Confidence 34444433 345667789999999999888766678888888888888899999999998876543 21 11111111
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCC---------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005474 382 LAMCADVGYTDEAFEIFEDMKSSEN---------------------------CQPDSWTFSSMITICSCRGKVSEAEAMF 434 (695)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m~~~~~---------------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~ 434 (695)
+..-...++.++++.....+...-. ..-...++..+.......+ ..+.--.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~ 631 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSEL 631 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhccccc
Confidence 1222224555555444433322100 0001111211111111000 0000000
Q ss_pred HHHHHCCCC--CC------HHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHH
Q 005474 435 NEMLEAGFE--PN------LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVE 504 (695)
Q Consensus 435 ~~m~~~g~~--p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~-~~a~~~~~ 504 (695)
.|...-+. |+ ...|......+.+.+..++|...+.+... +.| ....|......+...|. ++|.+.|.
T Consensus 632 -~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 632 -KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred -ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 01111111 22 23455667788889999999988888763 344 33345544455555666 99999999
Q ss_pred HHHHcCCChhHHHHHHhhhhcchhh-HHHHHHHHHHhc-ccCccc-cchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 505 CVEKSNSKLGYVVKLLLEEQDIEGD-FKKEATELFNSI-SKDVKK-AYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 505 ~~~~~~p~~~~~~~~l~~~~~~~g~-~~~eA~~l~~~~-~~~~~~-~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
....++|++......+|.++.+.|. .+.++..++..+ ..+|.. ..|-.|+.++.+.|+.++|.+-|+-+.+..
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9999999999999999999887763 334444466554 556654 489999999999999999999999887654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-07 Score=97.74 Aligned_cols=238 Identities=18% Similarity=0.210 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHc-----CC-
Q 005474 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNE-----K-WRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAI-----GV- 301 (695)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~- 301 (695)
..+...|...|...|+++.|+.++++.++. | ..+... ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888888888888888888776653 1 012222 2233556777778888888888777542 11
Q ss_pred CCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHc---C
Q 005474 302 KPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDN-----GLS-PNW-NTYASLLRAYGRARYGEDTLSVYREMKEK---G 370 (695)
Q Consensus 302 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~ 370 (695)
.|. ..+++.|..+|++.|++++|...++...+. |.. +.+ .-++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 111 345566666777777777777666654321 111 111 12444555666666777776666654321 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 005474 371 MQLS----VTLYNTLLAMCADVGYTDEAFEIFEDMKSSE----N--CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE- 439 (695)
Q Consensus 371 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 439 (695)
+.++ ..+++.|...|...|++++|.++++...... . ..-....++.|...|.+.++.++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1111 2355666666666666666666666553311 0 011123445555556666666666666554332
Q ss_pred ---CCC-CC-CHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 440 ---AGF-EP-NLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 440 ---~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
.|. .| ...+|..|...|...|++++|+++.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 221 11 2345556666666666666666665544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.8e-06 Score=83.32 Aligned_cols=398 Identities=14% Similarity=0.116 Sum_probs=210.0
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HH--HHHHcCChhHHH
Q 005474 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL--IS--CARMNNLPNKAV 220 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l--i~--~~~~~g~~~~A~ 220 (695)
+++|......+.... +.+...+..=+-++.+.++|++|+.+.+.-.. ..+++.. =. +.-+.+..++|+
T Consensus 28 ~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 28 YEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred HHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHHcccHHHHH
Confidence 778888888877653 34455566667778888999999865443221 1222222 23 444678899998
Q ss_pred HHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 221 EWFERMPSFGCDP-DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 221 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
..++- +.+ |..+...-...+.+.|++++|..+|+.+.+.+..- |...-..++.+- .+... +.|..
T Consensus 100 k~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~~-~~~q~ 166 (652)
T KOG2376|consen 100 KTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQV-QLLQS 166 (652)
T ss_pred HHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------HhhhH-HHHHh
Confidence 88873 333 33466666777888999999999999998765221 111122222111 11111 12222
Q ss_pred cCCCCCHHhHHHHHH---HHHhcCChHHHHHHHHHHHHCC-------CCCCH------H-HHHHHHHHHHhCCChHHHHH
Q 005474 299 IGVKPNMITYNNLLD---TMGRAKRPWQVKTIYKEMTDNG-------LSPNW------N-TYASLLRAYGRARYGEDTLS 361 (695)
Q Consensus 299 ~g~~p~~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~~-------~~~~~------~-~~~~li~~~~~~g~~~~A~~ 361 (695)
....| ..+|..+.+ .+...|++.+|+++++...+.+ -.-+. . .-.-|...+-..|+-++|..
T Consensus 167 v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 22233 335554443 4567899999999999883211 00011 1 11234456678899999999
Q ss_pred HHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHH-HHHHHHH------------Hh-----------------------
Q 005474 362 VYREMKEKGMQLSVT----LYNTLLAMCADVGYTD-EAFEIFE------------DM----------------------- 401 (695)
Q Consensus 362 ~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~-~A~~~~~------------~m----------------------- 401 (695)
+|..+.+.+.. |.. .-|.|+..-....-++ .++..++ .+
T Consensus 246 iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 246 IYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999887654 432 2222322111110000 0000000 00
Q ss_pred ------HhCCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH---
Q 005474 402 ------KSSENCQPDSWTFSSMITICSC--RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN--- 470 (695)
Q Consensus 402 ------~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~--- 470 (695)
.......|. ..+.+++..+.+ ......|.+++...-+....-...+...++......|+++.|++++.
T Consensus 325 q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 325 QVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 000000122 222233332221 12355566666666554322235566667777788888888888888
Q ss_pred -----HhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH-------cCCChhHHHHHHhhhhcchhhHHHHHHHH
Q 005474 471 -----RLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK-------SNSKLGYVVKLLLEEQDIEGDFKKEATEL 537 (695)
Q Consensus 471 -----~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~eA~~l 537 (695)
...+.+..|..+. .+...+.+.+. +.+..+++.+.. ..+..-++...++..-...| .-++|..+
T Consensus 404 ~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G-~~~ea~s~ 480 (652)
T KOG2376|consen 404 ESWKSSILEAKHLPGTVG--AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG-NEEEASSL 480 (652)
T ss_pred hhhhhhhhhhccChhHHH--HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC-chHHHHHH
Confidence 5555555565443 33444455544 444444444332 12222223333333333335 66788888
Q ss_pred HHhccc-C-ccccchHHHHHHHHhcCCHHHHHHHH
Q 005474 538 FNSISK-D-VKKAYCNCLIDLCVNLNLLENACKLL 570 (695)
Q Consensus 538 ~~~~~~-~-~~~~~~~~L~~~~~~~g~~~~A~~~l 570 (695)
++++-. . ++..+.-.++.+|++. +.+.|..+-
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 877732 3 3444666677776665 445555443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.7e-06 Score=82.48 Aligned_cols=294 Identities=12% Similarity=0.034 Sum_probs=192.9
Q ss_pred cCChhHHHHHHHhchhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChHHHH
Q 005474 213 NNLPNKAVEWFERMPSF-GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP-NAFSTLIKLYGTAGNFDGCL 290 (695)
Q Consensus 213 ~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~ 290 (695)
.++...|...+-.+... -++-|+.....+.+.+...|+.++|...|++....+ |+. .......-.+.+.|+++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHH
Confidence 34444444444333322 245567777888888888888888888888877542 222 22222233445677777777
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 005474 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370 (695)
Q Consensus 291 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 370 (695)
.+...+.... +-....|-.-.......++++.|+.+-++.++... .+...|-.-...+...|+.++|.-.|+......
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 7777765431 11223333334445566778888887777776432 233444444456677888888888888776543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHHCCCCCC-HH
Q 005474 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TIC-SCRGKVSEAEAMFNEMLEAGFEPN-LF 447 (695)
Q Consensus 371 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li-~~~-~~~g~~~~A~~~~~~m~~~g~~p~-~~ 447 (695)
+.+...|.-|+..|...|++.+|.-.-+...+.- ..+..+...+. ..+ -....-++|.++++...+ +.|+ ..
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~ 439 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTP 439 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHH
Confidence 2367788889999998898888887766554421 33444444331 111 222334778888888776 4564 34
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHH
Q 005474 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV 517 (695)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~ 517 (695)
.-+.+...+...|+.++++.++++... ..||....+.|.+.+...+. .++...|..+..++|++....
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 556777788899999999999998774 47899999999988888887 999999999999999875544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-06 Score=88.12 Aligned_cols=128 Identities=14% Similarity=0.018 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 005474 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315 (695)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 315 (695)
..|..+...|.+.|+.++|...|++..+.. +.+...|+.+...|...|++++|.+.|++..+.... +..+|..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 345555555666666666666666665543 334556666666666666666666666666554211 344555555555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 005474 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367 (695)
Q Consensus 316 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 367 (695)
...|++++|.+.|+...+.. |+..........+...++.++|...|.+..
T Consensus 143 ~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 56666666666666655532 222111111112233455666666664433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-06 Score=85.95 Aligned_cols=194 Identities=14% Similarity=0.018 Sum_probs=97.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 005474 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282 (695)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 282 (695)
|..+-..|...|+.++|+..|++..+.. +.+...|+.+...+...|++++|...|++..+.. +-+..+|..+...+..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444445555666666666666555532 2245566666666666666666666666666543 2234555666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 005474 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 362 (695)
.|++++|++.|+...+.. |+..........+...+++++|...|.+..... .++...+ .+. +...|+...+ +.
T Consensus 145 ~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~ 217 (296)
T PRK11189 145 GGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TL 217 (296)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHH--HHHccCCCHH-HH
Confidence 666666666666666542 322211111222334456666666665543321 1221111 111 2223444333 23
Q ss_pred HHHHHHc---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 005474 363 YREMKEK---GMQ---LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405 (695)
Q Consensus 363 ~~~m~~~---~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 405 (695)
+..+.+. .+. .....|..+...+.+.|++++|+..|++..+.+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333321 000 022355566666777777777777777766544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.4e-06 Score=84.64 Aligned_cols=154 Identities=15% Similarity=0.087 Sum_probs=72.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHcCChhHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCC
Q 005474 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFST---LISCARMNNLPNKAVEWFERMPSFGCDPD-ALTYSSMIDAYGRAGN 250 (695)
Q Consensus 175 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 250 (695)
+...|++++|.++++...+.. +.|...+.. ........+....+.+.++... ...|+ ......+...+...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCC
Confidence 445566666666666655541 122223221 1111111233334444443311 11222 2333344455555666
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH--HhHHHHHHHHHhcCChHHHHHH
Q 005474 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-PNM--ITYNNLLDTMGRAKRPWQVKTI 327 (695)
Q Consensus 251 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~--~~~~~li~~~~~~g~~~~a~~~ 327 (695)
+++|.+.+++..+.. +.+...+..+...|...|++++|...+++....... ++. ..|..+...+...|++++|..+
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 666666666665543 334445555556666666666666666655543211 111 2233445555555666666666
Q ss_pred HHHHH
Q 005474 328 YKEMT 332 (695)
Q Consensus 328 ~~~m~ 332 (695)
+++..
T Consensus 209 ~~~~~ 213 (355)
T cd05804 209 YDTHI 213 (355)
T ss_pred HHHHh
Confidence 65553
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-05 Score=83.91 Aligned_cols=306 Identities=9% Similarity=-0.070 Sum_probs=179.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHH-HHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHH
Q 005474 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGV-KPDNVTFS-TLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242 (695)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 242 (695)
...|..+...+...|+.+.+.+.+....+... ..+..... .....+...|++++|.+++++..+.. +.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 45567777777777888887777766554321 22322222 22235677899999999999887742 234444442 2
Q ss_pred HHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 005474 243 DAYGR----AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318 (695)
Q Consensus 243 ~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 318 (695)
..+.. .+..+.+.+.++... ...+........+...+...|++++|.+.+++..+... .+...+..+...+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHc
Confidence 22222 344555555555421 11122334555666788889999999999999988642 3566778888889999
Q ss_pred CChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCH
Q 005474 319 KRPWQVKTIYKEMTDNGL-SPNW--NTYASLLRAYGRARYGEDTLSVYREMKEKGM-QLSVTLY-N--TLLAMCADVGYT 391 (695)
Q Consensus 319 g~~~~a~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~-~--~li~~~~~~g~~ 391 (695)
|++++|...+++...... .++. ..|..+...+...|++++|..+|++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999998876432 1222 3455677888899999999999998764432 1112111 1 233333444443
Q ss_pred HHHHHH--HHHh-HhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---C-----CHHHHHHHHHHHHHcC
Q 005474 392 DEAFEI--FEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE---P-----NLFVLTSLIQCYGKAQ 460 (695)
Q Consensus 392 ~~A~~~--~~~m-~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p-----~~~~~~~li~~~~~~g 460 (695)
..+.++ +... ..................++...|+.++|..+++.+...... - .+.......-++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333332 2111 111000111122234566677788888888888887663211 0 1112222223455778
Q ss_pred CHhHHHHHHHHhhh
Q 005474 461 RTDDVVRALNRLPE 474 (695)
Q Consensus 461 ~~~~A~~~~~~m~~ 474 (695)
++++|+..+.....
T Consensus 322 ~~~~A~~~L~~al~ 335 (355)
T cd05804 322 NYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-05 Score=84.18 Aligned_cols=393 Identities=14% Similarity=0.073 Sum_probs=251.9
Q ss_pred HHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-H-HHHHcC
Q 005474 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-S-CARMNN 214 (695)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li-~-~~~~~g 214 (695)
+.+...+++..+.+.|+..... .--....|+.+-..|...|.-..|..++++-....-.|+..+--.++ . ++.+.+
T Consensus 331 ~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~ 408 (799)
T KOG4162|consen 331 FALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLK 408 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchh
Confidence 4445556678888888877543 34456779999999999999999999998866543224434333333 3 344567
Q ss_pred ChhHHHHHHHhchhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 005474 215 LPNKAVEWFERMPSF--GC--DPDALTYSSMIDAYGRA-----------GNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279 (695)
Q Consensus 215 ~~~~A~~~~~~m~~~--g~--~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 279 (695)
..++++++-.+.... +. ......|..+.-+|... ....++++.+++..+.+ +-|+.+.-.+.--
T Consensus 409 ~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq 487 (799)
T KOG4162|consen 409 LVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQ 487 (799)
T ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 778887777666551 11 12344555555555432 12457788888887765 3344444445556
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhCCChHH
Q 005474 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGED 358 (695)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~ 358 (695)
|+..++.+.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+..... |. |......-+..-...++.++
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHH
Confidence 7788999999999999998866678999999999999999999999999876543 21 11111111222222445555
Q ss_pred HHHHHHHHHHc---------------------CC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-CCC
Q 005474 359 TLSVYREMKEK---------------------GM-------QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQP 409 (695)
Q Consensus 359 A~~~~~~m~~~---------------------~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p 409 (695)
++.....+... |. .-...++..+..-....+....-..- +..... ..|
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~ 642 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGP 642 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cCcccccCCC
Confidence 44443332210 00 00112222222111111100000000 111111 012
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH-
Q 005474 410 D------SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR- 482 (695)
Q Consensus 410 ~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~- 482 (695)
+ ...|......+.+.++.++|...+.+..... .-....|......+...|.+++|...|.... -+.|+.+
T Consensus 643 ~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al--~ldP~hv~ 719 (799)
T KOG4162|consen 643 DSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL--ALDPDHVP 719 (799)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH--hcCCCCcH
Confidence 2 2235566677889999999998888887632 2256677777788889999999999999887 4578655
Q ss_pred HHHHHHHHHhcCCH-HHHHH--HHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc
Q 005474 483 FCGCLLNVMTQTPK-EELGK--LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 541 (695)
Q Consensus 483 ~~~~ll~~~~~~~~-~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~ 541 (695)
...++..++.+.|. .-+.+ ++.++.+.+|.+..++..||...-+.| ..++|.+.|...
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G-d~~~Aaecf~aa 780 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG-DSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-chHHHHHHHHHH
Confidence 67777778888888 55555 999999999999999999999988888 788999988754
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-07 Score=94.37 Aligned_cols=256 Identities=16% Similarity=0.115 Sum_probs=158.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHH
Q 005474 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324 (695)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 324 (695)
+.-.|++..++.-.+ .....-..+......+.++|...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344577777765555 222111122334455667777777766443 3333322 45555555554444433444444
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 005474 325 KTIYKEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403 (695)
Q Consensus 325 ~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 403 (695)
..-+++........ +.........++...|++++|++++... -+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444333232222 2333333345567789999998887643 2567777788999999999999999999987
Q ss_pred CCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC
Q 005474 404 SENCQPDSWTFSSMITICS----CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479 (695)
Q Consensus 404 ~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 479 (695)
.+ .|. +...+..++. -.+++.+|..+|+++.+. +.++..+.+.+..++...|++++|..++++..+. .|
T Consensus 160 ~~---eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~ 232 (290)
T PF04733_consen 160 ID---EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DP 232 (290)
T ss_dssp CS---CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---C
T ss_pred cC---CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cc
Confidence 43 343 3333444433 234689999999998764 5678899999999999999999999999998754 44
Q ss_pred -CHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCChhHHHH
Q 005474 480 -DDRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYVVK 518 (695)
Q Consensus 480 -d~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~~p~~~~~~~ 518 (695)
|..+...++.+....|+ +.+.+++.++....|+++.+.+
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 44566667777777777 7788899999999998766543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-06 Score=77.85 Aligned_cols=200 Identities=14% Similarity=0.017 Sum_probs=113.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005474 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389 (695)
Q Consensus 310 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 389 (695)
.|.-.|...|+...|.+-+++.++... .+..++..+...|.+.|..+.|.+.|++....... +..+.|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 344455566666666666666555431 23445555666666666666666666665554333 3444455555566666
Q ss_pred CHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 005474 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469 (695)
Q Consensus 390 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 469 (695)
++++|...|++......+.--..+|..+.-+..+.|+.+.|...|++.++... -...+...+.....+.|++-.|..++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHH
Confidence 66666666666655443333445566666666666777777777766666321 13345555666666667777777776
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCh
Q 005474 470 NRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 513 (695)
Q Consensus 470 ~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~ 513 (695)
+.....+. ++.......|..-...|+ +.+.++=..+.+..|..
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 66655443 565555555555555565 44444444444445543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-05 Score=76.86 Aligned_cols=396 Identities=12% Similarity=0.095 Sum_probs=233.0
Q ss_pred hHHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005474 145 PDTAALALTYFTNKLKASK-EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 223 (695)
+.-|+.+++.......... ++..| +...+.+.|++++|+..|..+.+. -.++...+..|.-++.-.|.+.+|..+-
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 5556666665543322111 33334 334567899999999999988764 3566777777777777789999998887
Q ss_pred HhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 005474 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303 (695)
Q Consensus 224 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 303 (695)
.+..+ ++-.-..|....-+.++-++-..+.+.+.+. ..---+|.++....-.+++|++++.+.... .|
T Consensus 115 ~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ 182 (557)
T KOG3785|consen 115 EKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NP 182 (557)
T ss_pred hhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Ch
Confidence 66543 4444455666667778877777777766542 122334455555556789999999999876 35
Q ss_pred CHHhHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005474 304 NMITYNNLLD-TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382 (695)
Q Consensus 304 ~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 382 (695)
+-...|..+. +|.+..-++-+.+++.-..+. ++.+....|.......+.=.-..|.+-...+.+.+-.- |- .+
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~-f~ 256 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP-FI 256 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-hH
Confidence 5555665444 456677778888888876654 22334444443333333222223333344444432211 11 23
Q ss_pred HHHHhc-----CCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005474 383 AMCADV-----GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457 (695)
Q Consensus 383 ~~~~~~-----g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 457 (695)
.-++++ .+-+.|++++--+.+. -|. .-..|+--|.+++++.+|..+.+++.- ..|-......++ ++
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~---IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~a 327 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKH---IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FA 327 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhh---ChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HH
Confidence 333443 2456777777655542 232 223455568999999999988776542 122222222222 22
Q ss_pred HcC-------CHhHHHHHHHHhhhCCCCCCHHH-HHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchh
Q 005474 458 KAQ-------RTDDVVRALNRLPELGITPDDRF-CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 528 (695)
Q Consensus 458 ~~g-------~~~~A~~~~~~m~~~g~~pd~~~-~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (695)
..| ...-|.+.|+-.-+.+..-|..- -.++..++.-... ++..-++..++.---+++.+.-.++.+.+.-|
T Consensus 328 alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atg 407 (557)
T KOG3785|consen 328 ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATG 407 (557)
T ss_pred HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhc
Confidence 333 34556666665545555444332 1122222233334 77888888887766666666555655555556
Q ss_pred hHHHHHHHHHHhcccC--ccccchHH-HHHHHHhcCCHHHHHHHHH
Q 005474 529 DFKKEATELFNSISKD--VKKAYCNC-LIDLCVNLNLLENACKLLE 571 (695)
Q Consensus 529 ~~~~eA~~l~~~~~~~--~~~~~~~~-L~~~~~~~g~~~~A~~~l~ 571 (695)
...||+++|-.+..+ .+..+|-+ |..+|.+.|+.+.|+.++-
T Consensus 408 -ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 408 -NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred -ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 788999998776433 45556655 5567778888888877653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.6e-05 Score=90.15 Aligned_cols=262 Identities=15% Similarity=0.055 Sum_probs=114.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHH
Q 005474 315 MGRAKRPWQVKTIYKEMTDNGLSPNW----NTYASLLRAYGRARYGEDTLSVYREMKEK----GMQ-LSVTLYNTLLAMC 385 (695)
Q Consensus 315 ~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~ 385 (695)
+...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... |.. .....+..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 34455555555555554432111111 12233444445555666555555554321 100 0112333344455
Q ss_pred HhcCCHHHHHHHHHHhHh----CCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHH
Q 005474 386 ADVGYTDEAFEIFEDMKS----SENC-QP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEA--GFEP--NLFVLTSLIQC 455 (695)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~----~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~~~~~li~~ 455 (695)
...|++++|...+++... .+.. .+ ....+..+...+...|++++|...+.+.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 555666655555544322 1100 01 1223333444445556666665555554331 1111 12233334445
Q ss_pred HHHcCCHhHHHHHHHHhhhC----CCCCCHHHH--HHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH----HHHHHhhhh
Q 005474 456 YGKAQRTDDVVRALNRLPEL----GITPDDRFC--GCLLNVMTQTPK-EELGKLVECVEKSNSKLGY----VVKLLLEEQ 524 (695)
Q Consensus 456 ~~~~g~~~~A~~~~~~m~~~----g~~pd~~~~--~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~----~~~~l~~~~ 524 (695)
+...|++++|...+++.... +........ ...+..+...|. +.+.+.+.......+.... ....+++.+
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 55556666665555554321 100000000 001112222333 5555554433321111111 112344444
Q ss_pred cchhhHHHHHHHHHHhccc-------Ccc-ccchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 525 DIEGDFKKEATELFNSISK-------DVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 525 ~~~g~~~~eA~~l~~~~~~-------~~~-~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
...| ..++|..++++... ... ..+...++.++.+.|+.++|...+.++++..
T Consensus 702 ~~~g-~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLG-QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcC-CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 4445 44556555544311 111 1244567788999999999999999998654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.8e-06 Score=74.15 Aligned_cols=197 Identities=14% Similarity=0.021 Sum_probs=110.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 005474 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317 (695)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 317 (695)
...|.-.|...|+...|.+-+++.++.. +-+..+|..+...|.+.|+.+.|.+.|++....... +....|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3345555666666666666666666554 334456666666666666666666666666554321 44455555555666
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005474 318 AKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396 (695)
Q Consensus 318 ~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 396 (695)
.|++++|...|++....-.- --..+|..+.-+..+.|+.+.|.+.|++..+.... .....-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 66666666666665543111 12344555555555666666666666666555333 22333345555556666666666
Q ss_pred HHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005474 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 397 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (695)
.++.....+ .++....-..|..-...|+.+.+.+.=..+..
T Consensus 195 ~~~~~~~~~--~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRG--GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcc--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666665544 35555555555555556666655555555444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00046 Score=71.48 Aligned_cols=374 Identities=12% Similarity=0.132 Sum_probs=199.6
Q ss_pred hhCChHHHHHHHHHHHhcCCCCCCHhHHHHH--HHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 005474 141 NMTNPDTAALALTYFTNKLKASKEVILYNVT--MKVF--RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216 (695)
Q Consensus 141 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l--i~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 216 (695)
...++++|+.+.+. .+ -..+++.. =.+| .+.+..++|+..++...+ .|..+...-...+-+.|++
T Consensus 58 q~~ky~~ALk~ikk---~~----~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~y 126 (652)
T KOG2376|consen 58 QLDKYEDALKLIKK---NG----ALLVINSFFFEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERY 126 (652)
T ss_pred hhhHHHHHHHHHHh---cc----hhhhcchhhHHHHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhH
Confidence 33457777755442 21 11222322 4455 478999999999873221 2344666666688899999
Q ss_pred hHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH---HHHHHHcCChHHHHHH
Q 005474 217 NKAVEWFERMPSFGCDP-DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL---IKLYGTAGNFDGCLNV 292 (695)
Q Consensus 217 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~ 292 (695)
++|+++|+.+.+.+.+- |...-..++.+-. .-.+. +.+.... .| ..+|..+ .-.++..|++.+|+++
T Consensus 127 dealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~el 197 (652)
T KOG2376|consen 127 DEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIEL 197 (652)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999999997765321 1111111111111 00111 1111111 12 2233322 2344567777777777
Q ss_pred HHHHHHcC-------------CCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhC-
Q 005474 293 YEEMKAIG-------------VKPNMI-TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN----TYASLLRAYGRA- 353 (695)
Q Consensus 293 ~~~m~~~g-------------~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~- 353 (695)
++...+.+ +.-... .-..|...+-..|+-.+|..++...++.... |.. .-|.|+.+-...
T Consensus 198 L~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~ 276 (652)
T KOG2376|consen 198 LEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQN 276 (652)
T ss_pred HHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccc
Confidence 77662211 000011 1122344556677777777777777765432 221 111111110000
Q ss_pred --------------------------------------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 005474 354 --------------------------------------------RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV- 388 (695)
Q Consensus 354 --------------------------------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~- 388 (695)
+..+.+.++-..+ .+..| ...+.+++..+.+.
T Consensus 277 ~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l--p~~~p-~~~~~~ll~~~t~~~ 353 (652)
T KOG2376|consen 277 YFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL--PGMSP-ESLFPILLQEATKVR 353 (652)
T ss_pred cCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC--CccCc-hHHHHHHHHHHHHHH
Confidence 0111111111100 01122 23334444433322
Q ss_pred -CCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHc
Q 005474 389 -GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN--------EMLEAGFEPNLFVLTSLIQCYGKA 459 (695)
Q Consensus 389 -g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~ 459 (695)
....++.+++....+... .-...+.-.+++.....|+++.|.+++. .+.+.+..|- +-..++..|.+.
T Consensus 354 ~~~~~ka~e~L~~~~~~~p-~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 354 EKKHKKAIELLLQFADGHP-EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKI 430 (652)
T ss_pred HHHHhhhHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhc
Confidence 246777777777766432 2224555667777889999999999999 5555454444 445667778888
Q ss_pred CCHhHHHHHHHHhhhC--CCCCCHHH----HHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHH
Q 005474 460 QRTDDVVRALNRLPEL--GITPDDRF----CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK 532 (695)
Q Consensus 460 g~~~~A~~~~~~m~~~--g~~pd~~~----~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (695)
++.+.|..++.+.+.. .-.+.... +.-+...-.+.|. +++..+++++.+.+|++..++.-+.-+|+.. ..+
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~--d~e 508 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL--DPE 508 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc--CHH
Confidence 8888788887766521 11222222 3333333345577 9999999999999999888776555555533 367
Q ss_pred HHHHHHHhccc
Q 005474 533 EATELFNSISK 543 (695)
Q Consensus 533 eA~~l~~~~~~ 543 (695)
.|..+-+.++.
T Consensus 509 ka~~l~k~L~p 519 (652)
T KOG2376|consen 509 KAESLSKKLPP 519 (652)
T ss_pred HHHHHhhcCCC
Confidence 78888776643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.4e-05 Score=79.45 Aligned_cols=288 Identities=15% Similarity=0.146 Sum_probs=128.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHH
Q 005474 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323 (695)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 323 (695)
+......+.+|+.+++.+.... .-..-|..+..-|...|+++.|.++|.+.- .++-.|.+|.+.|+|..
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 3344455555555555554432 122234445555555555555555554321 23334555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 005474 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403 (695)
Q Consensus 324 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 403 (695)
|.++-.+.. |.......|-+-..-.-++|++.+|.++|-.+.+ |+ ..|.+|-+.|..+..+++.++-..
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 555544332 2222333344444444455555555554433211 12 134455555555555555443321
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHH
Q 005474 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483 (695)
Q Consensus 404 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~ 483 (695)
..-..|...+..-|-..|++..|..-|-+..+ |.+-++.|-..+-|++|.++-+.- -| .|..-
T Consensus 879 ----d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakte--gg--~n~~k 941 (1636)
T KOG3616|consen 879 ----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTE--GG--ANAEK 941 (1636)
T ss_pred ----hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhcc--cc--ccHHH
Confidence 11123334444455555666666555543322 344555565666666665554321 11 11111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccCccccchHHHHHHHHhcCCH
Q 005474 484 CGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLL 563 (695)
Q Consensus 484 ~~~ll~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~ 563 (695)
...++-+-+ .|.+.|.+++.+.--+. ..++ ..++.+ -++-|.++-+-.....-..+.--+.-.+-..|++
T Consensus 942 ~v~flwaks-iggdaavkllnk~gll~----~~id----~a~d~~-afd~afdlari~~k~k~~~vhlk~a~~ledegk~ 1011 (1636)
T KOG3616|consen 942 HVAFLWAKS-IGGDAAVKLLNKHGLLE----AAID----FAADNC-AFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKF 1011 (1636)
T ss_pred HHHHHHHHh-hCcHHHHHHHHhhhhHH----HHhh----hhhccc-chhhHHHHHHHhhhccCccchhHHhhhhhhccch
Confidence 111221111 12244444443311000 0001 111112 3344444332221222222444556667778888
Q ss_pred HHHHHHHHHHHHcCccc
Q 005474 564 ENACKLLELGLTLEVYT 580 (695)
Q Consensus 564 ~~A~~~l~~~~~~~~~~ 580 (695)
++|-+-+-++++.+.+.
T Consensus 1012 edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 1012 EDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred hhhhHhhHHHhhccccc
Confidence 88888887777766543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.7e-07 Score=88.63 Aligned_cols=220 Identities=13% Similarity=0.142 Sum_probs=98.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHH
Q 005474 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGT 282 (695)
Q Consensus 204 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~ 282 (695)
..+.+++...|+.+.++ .++.... .|.......+...+....+-+.+..-+++........ +..........+..
T Consensus 39 ~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~ 114 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH 114 (290)
T ss_dssp HHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 34445555566554332 3332222 3444444333333332233334444333333222121 11222222233444
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhCCChHH
Q 005474 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY----GRARYGED 358 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~g~~~~ 358 (695)
.|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.+ .|. +...+..++ ...+.+.+
T Consensus 115 ~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 115 EGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp CCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCH
T ss_pred cCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHH
Confidence 56666666555432 234444455556666666666666666665432 222 222233322 22234566
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Q 005474 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV-SEAEAMFNEM 437 (695)
Q Consensus 359 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 437 (695)
|..+|+++.++ ..++..+.+.+..++...|++++|.+++.+....+ +-+..+...+|......|+. +.+.+++.++
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 66666665443 33455556666666666666666666666655433 33444555555555555554 4455555555
Q ss_pred HH
Q 005474 438 LE 439 (695)
Q Consensus 438 ~~ 439 (695)
..
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.9e-05 Score=81.43 Aligned_cols=134 Identities=21% Similarity=0.289 Sum_probs=60.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005474 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394 (695)
Q Consensus 315 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 394 (695)
......|.+|+.+++.+..... -..-|..+.+.|+..|+++.|.++|.+.- .++-.|.+|.+.|+++.|
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 3444455555555554444321 12234444455555555555555554321 122344555555555555
Q ss_pred HHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 005474 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471 (695)
Q Consensus 395 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 471 (695)
.++-.+... . ......|.+-..-+-++|++.+|.++|-.+.+ |+ ..|..|-++|..++.+++.++
T Consensus 811 ~kla~e~~~--~-e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 811 FKLAEECHG--P-EATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHhcC--c-hhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHH
Confidence 555443321 1 22333444444444455555555555433322 32 234555555555555555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00045 Score=70.73 Aligned_cols=182 Identities=16% Similarity=0.119 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 005474 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG---KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467 (695)
Q Consensus 391 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 467 (695)
.+++..+++.....-. .-+..+|..+.+---..- +.+....+++++...-..--..+|-.+++.-.+..-.+.|..
T Consensus 309 t~e~~~~yEr~I~~l~-~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLL-KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 4566666666654322 334455554443222111 255566677776653222223467788888888888999999
Q ss_pred HHHHhhhCCCCC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccC--
Q 005474 468 ALNRLPELGITP-DDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD-- 544 (695)
Q Consensus 468 ~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~-- 544 (695)
+|.+..+.+..+ +...+.+++.-++....+-|.++|+.-.+.-++.+..+..+...+...+ .-..|+.+|+++...
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lN-dd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLN-DDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-cchhHHHHHHHHHhccC
Confidence 999999888888 6668888888777776699999999988877777765544433333334 336688899877332
Q ss_pred -cc--ccchHHHHHHHHhcCCHHHHHHHHHHHH
Q 005474 545 -VK--KAYCNCLIDLCVNLNLLENACKLLELGL 574 (695)
Q Consensus 545 -~~--~~~~~~L~~~~~~~g~~~~A~~~l~~~~ 574 (695)
++ ..+|+.+++.-..-|+++.+.++-++..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33 3599999999999999999988887764
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.3e-05 Score=69.80 Aligned_cols=270 Identities=13% Similarity=0.067 Sum_probs=162.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCChhHHH
Q 005474 144 NPDTAALALTYFTNKLKASKEVILYNVT-MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC--ARMNNLPNKAV 220 (695)
Q Consensus 144 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~ 220 (695)
++..|...++.+... .|...-|... ...+-+.+.+.+|+.+...|.+. ++...-..-+.+ .-..+++..+.
T Consensus 59 ~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~r 132 (459)
T KOG4340|consen 59 EFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSR 132 (459)
T ss_pred HHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchH
Confidence 367788888887764 3554444432 35567889999999999888643 222222222222 23467888899
Q ss_pred HHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 005474 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300 (695)
Q Consensus 221 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 300 (695)
.+.++....| +..+.+...-...+.|++++|.+-|+...+-+---....||.-+.-| +.|+++.|++...+++++|
T Consensus 133 sLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 133 SLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhh
Confidence 9998887533 55555655556678999999999999988765444566787666544 5689999999999999988
Q ss_pred CCCCHH----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCH
Q 005474 301 VKPNMI----TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSV 375 (695)
Q Consensus 301 ~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~ 375 (695)
++-... .-.-.+++-. .|+. . .|..++ -...+|.-...+.+.|+++.|.+.+.+|.-+ ....|.
T Consensus 209 ~r~HPElgIGm~tegiDvrs-vgNt---~----~lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP 277 (459)
T KOG4340|consen 209 IRQHPELGIGMTTEGIDVRS-VGNT---L----VLHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP 277 (459)
T ss_pred hhcCCccCccceeccCchhc-ccch---H----HHHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc
Confidence 652211 0000111000 0000 0 000000 0122333344556778888888877777422 233455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005474 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437 (695)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 437 (695)
+|...+.-.-. .+++.+..+-+.-+...+ +-...||..++-.||++.-++.|-+++.+-
T Consensus 278 vTLHN~Al~n~-~~~p~~g~~KLqFLL~~n--PfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 278 VTLHNQALMNM-DARPTEGFEKLQFLLQQN--PFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred hhhhHHHHhcc-cCCccccHHHHHHHHhcC--CCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 66554432221 244555555555555444 345567777777888888888777776553
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.8e-05 Score=76.22 Aligned_cols=382 Identities=12% Similarity=0.020 Sum_probs=200.0
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHH
Q 005474 142 MTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD-NVTFSTLISCARMNNLPNKAV 220 (695)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~ 220 (695)
-++++.|+..|..+.... ++|-+.|..-..+|...|++++|++=-.+-++. .|+ ...|+-.-.++.-.|++++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHH
Confidence 345888888888887653 447777888888888888888887755554443 455 456777777788888888888
Q ss_pred HHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHH---HHHHHHHhhCC---CCCCHHHHHHHHHHHHH----------c
Q 005474 221 EWFERMPSFGCDP-DALTYSSMIDAYGRAGNVEMA---FGLYDRARNEK---WRIDPNAFSTLIKLYGT----------A 283 (695)
Q Consensus 221 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A---~~~~~~~~~~g---~~~~~~~~~~li~~~~~----------~ 283 (695)
.-|.+=++. .| |...++-+..++.......+. -.++..+...- .......|..++..+-+ .
T Consensus 91 ~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 91 LAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 888776653 34 455666676666111000000 00111111000 00011122222222211 0
Q ss_pred CChHHHHHHHHH-----HHHcC-------CCC------------C----------HHhHHHHHHHHHhcCChHHHHHHHH
Q 005474 284 GNFDGCLNVYEE-----MKAIG-------VKP------------N----------MITYNNLLDTMGRAKRPWQVKTIYK 329 (695)
Q Consensus 284 g~~~~A~~~~~~-----m~~~g-------~~p------------~----------~~~~~~li~~~~~~g~~~~a~~~~~ 329 (695)
.++..+.-.+.. +...| ..| | ..-...+.++..+..+++.|.+.+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 111111111110 00000 011 0 0112345556666677777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHHhH
Q 005474 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT-------LLAMCADVGYTDEAFEIFEDMK 402 (695)
Q Consensus 330 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------li~~~~~~g~~~~A~~~~~~m~ 402 (695)
...+.. -+..-++....+|...|.+.++...-+...+.|.. ...-|+. +..+|.+.++++.|+..|.+..
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 776654 34445556666777777777666666655554432 1222222 2235555667777777777765
Q ss_pred hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC-C
Q 005474 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL-FVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-D 480 (695)
Q Consensus 403 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d 480 (695)
.... .|+. ..+....+++.+......-. .|.. .-...-...+.+.|++..|+..|.++++.. | |
T Consensus 326 te~R-t~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~D 391 (539)
T KOG0548|consen 326 TEHR-TPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PED 391 (539)
T ss_pred hhhc-CHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--Cch
Confidence 5432 3322 22333334444443333322 2221 111222456677777777777777777653 5 4
Q ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCccc
Q 005474 481 DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKK 547 (695)
Q Consensus 481 ~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~ 547 (695)
...|.--.-+|.+.|. ..+.+-.+...+++|+....+.-=|-++.... .+++|.+.++.. ..+|+.
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk-~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK-EYDKALEAYQEALELDPSN 459 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCchh
Confidence 4556666666667777 77777777777777775543322222222222 566666666544 334443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00053 Score=66.18 Aligned_cols=319 Identities=10% Similarity=0.044 Sum_probs=175.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHHcCChhHHHHHHHhchhCCCCCCHHHH-H
Q 005474 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS---CARMNNLPNKAVEWFERMPSFGCDPDALTY-S 239 (695)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~ 239 (695)
++.-.--+.+.+...|++.+|+.-|...++- |...|.++.+ .|...|+-.-|+.-|.+.++ +.||-..- .
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHH
Confidence 4444555777788899999999999888754 5566666654 67788888888888888776 46664322 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 005474 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319 (695)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 319 (695)
.-...+.+.|.+++|..-|+.+++.. |+..+- ..++.+.--.++-.. ....+..+...|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~~----------------l~~ql~s~~~~G 169 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHWV----------------LVQQLKSASGSG 169 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHHH----------------HHHHHHHHhcCC
Confidence 23345678899999999999988764 321110 011111000011111 111122233344
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005474 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399 (695)
Q Consensus 320 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 399 (695)
+...|+.....+++.. +.|...|..-..+|...|++..|+.-++...+.... +..++.-+-..+...|+.+.++...+
T Consensus 170 D~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred chhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5555555555444432 234444444445555555555554444333332222 22223334444444555555555544
Q ss_pred HhHhCCCCCCCHHHHH-----------HH--HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHh
Q 005474 400 DMKSSENCQPDSWTFS-----------SM--ITICSCRGKVSEAEAMFNEMLEAGFEPNLF---VLTSLIQCYGKAQRTD 463 (695)
Q Consensus 400 ~m~~~~~~~p~~~~~~-----------~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~ 463 (695)
+-.+. .||....- .| +......+++.++.+-.+...+....-... .+..+-.+|...|++.
T Consensus 248 ECLKl---dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 248 ECLKL---DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred HHHcc---CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence 44432 23322110 00 111234556666666666666643221222 3344556677788888
Q ss_pred HHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHH
Q 005474 464 DVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 516 (695)
Q Consensus 464 ~A~~~~~~m~~~g~~pd-~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~ 516 (695)
+|++.-.+.+ .+.|| ..++.--..+|.-... ++|..-|+.+.+.++++..+
T Consensus 325 eAiqqC~evL--~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 325 EAIQQCKEVL--DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHHHH--hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 8888888877 44675 5566666666666666 88888888888888877554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00011 Score=86.83 Aligned_cols=369 Identities=10% Similarity=-0.060 Sum_probs=183.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHH
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST---LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243 (695)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 243 (695)
.+......+...|++.+|....... +.. ...... ........|++..+..+++.+.......+.........
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a---~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~ 417 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAA---GDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAW 417 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC---CCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHH
Confidence 3455556667777777666544332 111 111111 11234456667766666666532111112222233444
Q ss_pred HHHhcCCHHHHHHHHHHHhhCC--C----CCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HhHHHH
Q 005474 244 AYGRAGNVEMAFGLYDRARNEK--W----RID--PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNL 311 (695)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~g--~----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l 311 (695)
.+...|++++|..++++....- . .+. ......+...+...|++++|...+++..+.-...+. ...+.+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 4456677777777776654320 0 011 112222334455677777777777776543111111 233445
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHH----cCCC--C-CHHHHH
Q 005474 312 LDTMGRAKRPWQVKTIYKEMTDN----GLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKE----KGMQ--L-SVTLYN 379 (695)
Q Consensus 312 i~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~--~-~~~~~~ 379 (695)
...+...|++++|...+.+.... |.. ....++..+...+...|++++|...+++..+ .+.. + ....+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 55666777777777777666531 110 1123444555666777777777777766543 2211 1 223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHH--HH--H
Q 005474 380 TLLAMCADVGYTDEAFEIFEDMKSSEN-CQP--DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG--FEPNLF--VL--T 450 (695)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~--~~--~ 450 (695)
.+...+...|++++|...+.+...... ..+ ....+..+...+...|+.++|.+.+.+..... ...... .. .
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 455556666777777777766543210 011 23334445556667777777777776664410 111110 00 1
Q ss_pred HHHHHHHHcCCHhHHHHHHHHhhhCCCCCCH---HHHHHHHHHHhcCCH-HHHHHHHHHHHHcC------CChhHHHHHH
Q 005474 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDD---RFCGCLLNVMTQTPK-EELGKLVECVEKSN------SKLGYVVKLL 520 (695)
Q Consensus 451 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~---~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~------p~~~~~~~~l 520 (695)
..+..+...|+.+.|...+............ ..+..+..++...|+ ++|...++++.... .........+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 1223445567777777777665432111111 112334445556666 67777666655421 1112233455
Q ss_pred hhhhcchhhHHHHHHHHHHhc
Q 005474 521 LEEQDIEGDFKKEATELFNSI 541 (695)
Q Consensus 521 ~~~~~~~g~~~~eA~~l~~~~ 541 (695)
+..+...| ..++|.+.+.+.
T Consensus 738 a~a~~~~G-~~~~A~~~L~~A 757 (903)
T PRK04841 738 NQLYWQQG-RKSEAQRVLLEA 757 (903)
T ss_pred HHHHHHcC-CHHHHHHHHHHH
Confidence 55555556 556666666544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-05 Score=89.14 Aligned_cols=235 Identities=12% Similarity=0.096 Sum_probs=182.7
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-----CHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005474 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-----NMITYNNLLDTMGRAKRPWQVKTIYKEMT 332 (695)
Q Consensus 258 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 332 (695)
|+++.... +-....|-..|......++.++|.+++++.... +.+ -...|.++++.-..-|.-+...++|+++.
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 44444332 445678899999999999999999999998754 211 13567788887777888889999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCC--
Q 005474 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD-- 410 (695)
Q Consensus 333 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-- 410 (695)
+.. .....|..|...|.+.+.+++|.++|+.|.++- .-....|...+..+.++.+-+.|.+++.+..+. -|.
T Consensus 1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~e 1598 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQE 1598 (1710)
T ss_pred Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhh
Confidence 752 235678899999999999999999999998752 246788999999999999999999999988763 333
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH--HHHHH
Q 005474 411 -SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR--FCGCL 487 (695)
Q Consensus 411 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--~~~~l 487 (695)
.....-.++.-.+.|+.+.+..+|+...... +.-...|+.+|+.-.++|+.+.+..+|++....++.|-.. .|...
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 4445566677788999999999999998753 2367799999999999999999999999999998888543 56666
Q ss_pred HHHHhcCCHHHHHH
Q 005474 488 LNVMTQTPKEELGK 501 (695)
Q Consensus 488 l~~~~~~~~~~a~~ 501 (695)
|..-...|+++..+
T Consensus 1678 LeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVE 1691 (1710)
T ss_pred HHHHHhcCchhhHH
Confidence 65444455533333
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4e-05 Score=81.50 Aligned_cols=258 Identities=17% Similarity=0.217 Sum_probs=121.3
Q ss_pred CHhHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhC-C--------CC
Q 005474 164 EVILYNVTMK--VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF-G--------CD 232 (695)
Q Consensus 164 ~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~ 232 (695)
|..+-..+++ .|..-|+.+.|.+-.+-+. +...|..+.+.|.+.++++-|.-.+-.|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3444444442 2445566666555544443 2345555555565555555554444444321 0 01
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 005474 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312 (695)
Q Consensus 233 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 312 (695)
++ .+-.-..-.....|.+++|+.+|.+-.. |..|=+.|...|.+++|+++-+.--+..+ ..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 11 1112222233456777777777777654 33444556667777777776654322211 23444444
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 005474 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392 (695)
Q Consensus 313 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 392 (695)
.-+-..++.+.|++.|++... +-...+. |+. .++.....+.+.+. |...|.--..-+...|+++
T Consensus 866 ~~Lear~Di~~AleyyEK~~~----hafev~r-mL~-----e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGV----HAFEVFR-MLK-----EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCC----hHHHHHH-HHH-----hChHHHHHHHHhcc------chHHHHHHHHHHhcccchH
Confidence 444555666666666654311 0111111 111 11111111222211 2233333344444556666
Q ss_pred HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 393 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
.|+.+|...++ |-++++..|-+|+.++|-++-++- -|......+.+.|...|++.+|+.+|.+.
T Consensus 930 aAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 930 AALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66666655543 223444455566666665554432 23444445555666666666666665544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00016 Score=69.60 Aligned_cols=303 Identities=10% Similarity=0.022 Sum_probs=188.2
Q ss_pred HHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHH
Q 005474 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM---IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF-STLIKLYG 281 (695)
Q Consensus 206 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~~ 281 (695)
+-..+...|++..|+.-|...++. |+..|.++ ...|...|+-..|+.-+.+.++. .||-..- .--...+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 444555566666666666655542 22233332 34455566666666666666654 3443221 11224455
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 005474 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361 (695)
Q Consensus 282 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 361 (695)
+.|.++.|..=|+...+.. |+..+ ...++.+.-..++-. .....+..+...|+...|+.
T Consensus 118 K~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHH
Confidence 6666666666666665542 22111 111111111111111 12234455667899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 005474 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441 (695)
Q Consensus 362 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 441 (695)
....+++..+ -|...|..-..+|...|.+..|+.=++...+.. ..+..++--+-..+...|+.+.++...++-++
T Consensus 177 ~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-- 251 (504)
T KOG0624|consen 177 MITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLK-- 251 (504)
T ss_pred HHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--
Confidence 9999998744 388888888899999999999999888887765 56777777778888999999999999998887
Q ss_pred CCCCHHH----HHHH---------HHHHHHcCCHhHHHHHHHHhhhCCCCCCHHH---HHHHHHHHhcCCH-HHHHHHHH
Q 005474 442 FEPNLFV----LTSL---------IQCYGKAQRTDDVVRALNRLPELGITPDDRF---CGCLLNVMTQTPK-EELGKLVE 504 (695)
Q Consensus 442 ~~p~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~---~~~ll~~~~~~~~-~~a~~~~~ 504 (695)
+.||... |..+ +......++|.+++...+...+....-..+. +..+-.++...+. .+|.+...
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 4566542 2211 2234567888888888888776543322333 3333334444455 88999999
Q ss_pred HHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc
Q 005474 505 CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 541 (695)
Q Consensus 505 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~ 541 (695)
++..++|++..++---+++|.-.. .+++|+.-++..
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE-~YD~AI~dye~A 367 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDE-MYDDAIHDYEKA 367 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhH-HHHHHHHHHHHH
Confidence 999999998877754455444333 777787777655
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0002 Score=76.48 Aligned_cols=225 Identities=15% Similarity=0.157 Sum_probs=141.6
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC--------CCCHHHHHHHHHHHHHc
Q 005474 143 TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-GV--------KPDNVTFSTLISCARMN 213 (695)
Q Consensus 143 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~--------~p~~~~~~~li~~~~~~ 213 (695)
++.+.|.+.++.+. +-.+|..|.+.|.+.++++-|.-.+..|... |. .++ .+-.-+.-.....
T Consensus 742 G~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred ccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 45677777666553 4567999999999999999998887777531 21 122 2222223345678
Q ss_pred CChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005474 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293 (695)
Q Consensus 214 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 293 (695)
|.+++|+.+|.+-++ |..|=+.|-..|.+++|.++-+.-.... =..||.....-+-..++.+.|++.|
T Consensus 814 gMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHH
Confidence 899999999988776 4455667778899999998876533321 2245655666666678888888888
Q ss_pred HHHH----------HcC---------CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 005474 294 EEMK----------AIG---------VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354 (695)
Q Consensus 294 ~~m~----------~~g---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 354 (695)
++.. ... -..|...|..-...+-..|+.+.|+.+|..... |-.++...|-.|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeecc
Confidence 7531 110 011233333334444455666666666655443 345666666677
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 005474 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402 (695)
Q Consensus 355 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 402 (695)
+.++|-++-++-. |......|.+.|...|++.+|..+|.+..
T Consensus 953 k~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 953 KTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred CchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7777766654422 44555557777777777777777776654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-07 Score=59.94 Aligned_cols=32 Identities=31% Similarity=0.618 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 441 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00012 Score=74.96 Aligned_cols=382 Identities=15% Similarity=0.090 Sum_probs=239.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCH
Q 005474 173 KVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD-ALTYSSMIDAYGRAGNV 251 (695)
Q Consensus 173 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 251 (695)
.+....|+++.|+.+|.+.+... ++|.+.|..-..+|...|++++|++=-.+-++ +.|+ ...|+-+..++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 45677899999999999988764 44778888999999999999999876666555 4566 56788999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH------HHHHc---CCCCCHHhHHHHHHHHH------
Q 005474 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE------EMKAI---GVKPNMITYNNLLDTMG------ 316 (695)
Q Consensus 252 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~---g~~p~~~~~~~li~~~~------ 316 (695)
++|+..|.+-++.. +-+...++.+..++.... ++.+.|. ..... ........|..++..+-
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999988775 556778888888882211 1111111 11100 00001122333332221
Q ss_pred ----hcCChHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHhCCChHH
Q 005474 317 ----RAKRPWQVKTIYKEM-----TDNG-------LSP------------N----------WNTYASLLRAYGRARYGED 358 (695)
Q Consensus 317 ----~~g~~~~a~~~~~~m-----~~~~-------~~~------------~----------~~~~~~li~~~~~~g~~~~ 358 (695)
...++..+.-.+... ...+ ..| | ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 101111111111100 0001 111 0 1123446667777788888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHH-------HHHHHHcCCHHHHH
Q 005474 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM-------ITICSCRGKVSEAE 431 (695)
Q Consensus 359 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~A~ 431 (695)
|.+-+....+.. -+..-++....+|...|.+.+....-....+.|. -...-|+.+ ..+|.+.++++.|.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 888888887765 3555666777788888888888777777666552 233333333 33566677788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 005474 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPK-EELGKLVECVEKS 509 (695)
Q Consensus 432 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~~~~~~-~~a~~~~~~~~~~ 509 (695)
..|++.....-.|+. ..+....+++++..+... -+.|+.. -...-.+.+.+.|+ .+|.+.+.++++.
T Consensus 319 ~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a--~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKA--YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHH--hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 888887664333332 223344555555555443 2344332 22222556667777 9999999999999
Q ss_pred CCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCcccc-chHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 510 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKA-YCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 510 ~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~-~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
+|+++..+...+.++.+.| .+.+|..-.+.. ...|+.. .|--=+-++....+++.|.+.|++++++.
T Consensus 388 ~P~Da~lYsNRAac~~kL~-~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLG-EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred CCchhHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999988888888877 556665544332 3344322 44444567777788999999999998765
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-07 Score=58.70 Aligned_cols=29 Identities=48% Similarity=0.991 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005474 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDR 260 (695)
Q Consensus 232 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (695)
.||..||++||++|++.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00011 Score=82.85 Aligned_cols=230 Identities=11% Similarity=0.127 Sum_probs=178.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-C---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 005474 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEK-W---RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309 (695)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 309 (695)
+...|-..|......+++++|.++.++++..= + .--...|.++++.-...|.-+...++|++..+.. -.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 46678888888999999999999999987531 1 1123578888888888888889999999998752 1245688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhc
Q 005474 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LSVTLYNTLLAMCADV 388 (695)
Q Consensus 310 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~ 388 (695)
.|...|.+.+++++|.++++.|.+. +.-....|...+..+.++.+-+.|..++.+..+.-.+ -......-.++.-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999875 2246778999999999999999999999987764222 1344555566777889
Q ss_pred CCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHhHHH
Q 005474 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVV 466 (695)
Q Consensus 389 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~ 466 (695)
|+.+.+..+|+...... +.....|+..|++-.++|+.+.++.+|++.+..++.|- ...|...+..--++|+-+.+.
T Consensus 1614 GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 99999999999998765 56788999999999999999999999999999887763 245555555444556654444
Q ss_pred HH
Q 005474 467 RA 468 (695)
Q Consensus 467 ~~ 468 (695)
.+
T Consensus 1692 ~V 1693 (1710)
T KOG1070|consen 1692 YV 1693 (1710)
T ss_pred HH
Confidence 33
|
|
| >smart00463 SMR Small MutS-related domain | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.3e-07 Score=69.09 Aligned_cols=77 Identities=31% Similarity=0.539 Sum_probs=65.5
Q ss_pred ceeeccccCChHHHHHHHHHHHHHHHHHHhcCCCCCCeeEEEeecccccccc-hhHHHHHHHHhhhcCCCCccCCCCcce
Q 005474 589 QWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD-KGLASVFESHLKELNAPFHDSPDKVGW 667 (695)
Q Consensus 589 ~w~~~l~~~s~G~~~~a~~~w~~~~~~~~~~g~~~p~~~~i~~g~~~~~~~~-~~~~~~i~~~l~~~~~pf~~~~~~~g~ 667 (695)
.|.+|||+|+.++|..++..|+...++. | .+..+.|+||.|.|+... +.++..+..+|...+.+|.+. .|.|+
T Consensus 1 ~~~lDLHG~~~~eA~~~l~~~l~~~~~~---~--~~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~~-~~~G~ 74 (80)
T smart00463 1 KWSLDLHGLTVEEALTALDKFLNNARLK---G--LEQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFRFAEE-GNSGV 74 (80)
T ss_pred CCeEEcCCCCHHHHHHHHHHHHHHHHHc---C--CCceEEEEEcccCCCccchhhHHHHHHhchhhcccccCCC-CCCeE
Confidence 3788999999999999999999998874 2 226789999999999743 678999999999888888775 89999
Q ss_pred EEEe
Q 005474 668 FLTT 671 (695)
Q Consensus 668 ~~~~ 671 (695)
++..
T Consensus 75 ~~v~ 78 (80)
T smart00463 75 LVVK 78 (80)
T ss_pred EEEE
Confidence 9874
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00017 Score=67.31 Aligned_cols=254 Identities=14% Similarity=0.128 Sum_probs=153.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHH-H
Q 005474 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-V 324 (695)
Q Consensus 246 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a 324 (695)
.-.|++..++..-+...... -+...-.-+-++|...|.+..... +++... .|.......+......-++.+. .
T Consensus 19 fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHH
Confidence 33466666665554443321 233333334455555555433222 222211 2233333333333333333333 2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 005474 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404 (695)
Q Consensus 325 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 404 (695)
.++.+.+.......+......-...|++.|++++|++....... ......+ +..+.+..+++-|...+++|.+.
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----LEAAALN--VQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc
Confidence 33444444443343434444445567888889988887766221 1233333 45566778889999999999873
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCC
Q 005474 405 ENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480 (695)
Q Consensus 405 ~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 480 (695)
.+..|.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..++++..+.... +
T Consensus 167 ----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-d 240 (299)
T KOG3081|consen 167 ----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-D 240 (299)
T ss_pred ----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-C
Confidence 456677766666654 46688999999999773 5688889999999999999999999999998865322 4
Q ss_pred HHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCChhHHH
Q 005474 481 DRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYVV 517 (695)
Q Consensus 481 ~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~~p~~~~~~ 517 (695)
..+..-++-+-.+.|. +-..+.+.+.....|+++.+.
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 5555555555555565 566778888888888876553
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00023 Score=71.69 Aligned_cols=205 Identities=12% Similarity=0.074 Sum_probs=91.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC-ChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC--
Q 005474 175 FRKCRDLDKAERLFDDMLDRGVKPD-NVTFSTLISCARMNN-LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN-- 250 (695)
Q Consensus 175 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-- 250 (695)
+...++.++|+.+++++++. .|+ ..+|+..-.++...| +++++++.++++.+.. +.+..+|+.....+.+.|+
T Consensus 47 l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 33344555555555555543 222 223333333333344 3455555555555432 1233344433333333343
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CCh----HH
Q 005474 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA---KRP----WQ 323 (695)
Q Consensus 251 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~----~~ 323 (695)
.++++.+++++++.. +-+..+|+....++.+.|+++++++.++++++.++. |...|+.....+.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 244555555555443 345555665555555666666666666666655433 344444443333322 111 23
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhC----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005474 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRA----RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386 (695)
Q Consensus 324 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 386 (695)
......+++... +-|...|+.+...+... +...+|.+++.+..+.++. +......|++.|+
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~ 266 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence 333443444332 12444455444444442 2233455555554443222 3444444555554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0056 Score=66.82 Aligned_cols=60 Identities=18% Similarity=0.100 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCH----HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhccc
Q 005474 483 FCGCLLNVMTQTPK----EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543 (695)
Q Consensus 483 ~~~~ll~~~~~~~~----~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~ 543 (695)
+-+.|++.|.+.++ -+|.-+++.....+|.+..+--.|.+.|.-.| -...|.++++.+..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lG-a~p~a~~~y~tLdI 501 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLG-AFPDAYELYKTLDI 501 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhc-CChhHHHHHHhcch
Confidence 34466777778776 56777788888889988877766666666556 66788888877643
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00024 Score=71.52 Aligned_cols=203 Identities=8% Similarity=0.051 Sum_probs=135.4
Q ss_pred cCChhHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh--HH
Q 005474 213 NNLPNKAVEWFERMPSFGCDP-DALTYSSMIDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF--DG 288 (695)
Q Consensus 213 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--~~ 288 (695)
.++.++|+.+.+++++. .| +..+|+..-..+...| ++++++..++++.+.. +-+..+|+.....+.+.|+. ++
T Consensus 50 ~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 50 DERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 56778888888888874 34 4456666666666667 5789999999988765 45666777666666666653 67
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC---CCh----HHHHH
Q 005474 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA---RYG----EDTLS 361 (695)
Q Consensus 289 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~----~~A~~ 361 (695)
++.+++++.+...+ |..+|+....++...|+++++++.++++++.+.. |...|+.....+.+. |.. ++..+
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 78888888876543 7778888888888888899999999998887644 555666555444433 222 35566
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHH
Q 005474 362 VYREMKEKGMQLSVTLYNTLLAMCADV----GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423 (695)
Q Consensus 362 ~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 423 (695)
...+++...+. |...|+-+...+... ++..+|.+.+.+..+.+ ..+......|++.|+.
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~--~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD--SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc--CCcHHHHHHHHHHHHh
Confidence 66566555433 556666666666552 33455777776665543 3556666667776664
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0029 Score=69.44 Aligned_cols=215 Identities=14% Similarity=0.174 Sum_probs=104.3
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHH
Q 005474 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG--VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239 (695)
Q Consensus 162 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 239 (695)
..|+.--...++++...+-+.+-+++++++.-.+ +.-+...-|.||-...+. +..+..+..+++.... .|+
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~----- 1053 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD----- 1053 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh-----
Confidence 3455556677788888888888888888776321 111222223333333332 3334444454444321 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC---------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 240 SMIDAYGRAGNVEMAFGLYDRARNEK---------------------WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~~~~~g---------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
+...+...+-+++|..+|++....+ ---.+.+|..+..+-.+.|...+|++-|-+.
T Consensus 1054 -ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1054 -IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred -HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 1222233334444444444321100 0012345555666666666665555544322
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 005474 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378 (695)
Q Consensus 299 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 378 (695)
-|...|.-+++...+.|.+++-.+.+....+..-.|... +.||-+|++.+++.+.++++ ..|+....
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i 1197 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANI 1197 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhH
Confidence 245556666666666666666666655555544333332 34566666666555443332 12344444
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 005474 379 NTLLAMCADVGYTDEAFEIFE 399 (695)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~ 399 (695)
..+.+-|...|.++.|.-+|.
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHH
Confidence 444555555555555544443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.8e-05 Score=77.80 Aligned_cols=245 Identities=12% Similarity=0.089 Sum_probs=160.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHH
Q 005474 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323 (695)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 323 (695)
-+.+.|++.+|.-.|+..++.. +-+..+|.-|......+++-..|+..+++..+.... |....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3456777888888888777664 446677888888888888888888888887775322 56666667777777777777
Q ss_pred HHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhCCChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005474 324 VKTIYKEMTDNGLS--------PNWNTYASLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADVGYTDEA 394 (695)
Q Consensus 324 a~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~A 394 (695)
|.+.++.-+....+ ++...-.. ..+.....+....++|-++ .+.+..+|...+..|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 87777776543211 00000000 1112222334444555544 3445446777777777777788888888
Q ss_pred HHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 395 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
.+.|+...... +-|..+||.|...++...+.++|+.-|++.++ +.|+ +.+..-|.-.|...|.+++|.+.|-..+
T Consensus 450 iDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 88888888755 56778888888888888888888888888887 4564 3344456667888888888888776543
Q ss_pred ---hC------CCCCCHHHHHHHHHHHhcCCH
Q 005474 474 ---EL------GITPDDRFCGCLLNVMTQTPK 496 (695)
Q Consensus 474 ---~~------g~~pd~~~~~~ll~~~~~~~~ 496 (695)
.. +..++...|..|=.+++..+.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 11 122344566666666666665
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.1e-05 Score=81.78 Aligned_cols=222 Identities=13% Similarity=0.070 Sum_probs=173.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 005474 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310 (695)
Q Consensus 231 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 310 (695)
++|--..-..+...+...|-...|..+|+++. .|.-+|.+|...|+..+|..+..+..++ +||...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34444445567778888899999999998865 4777888999999999999998888774 678888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005474 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390 (695)
Q Consensus 311 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 390 (695)
+.+......-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+.+. ....+|..+-.+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhh
Confidence 888877777788888888765432 111122222347899999999988766532 256778878888889999
Q ss_pred HHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 005474 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470 (695)
Q Consensus 391 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 470 (695)
++.|.+.|..-.... +.+...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|++.++
T Consensus 535 ~q~av~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 999999999888754 5567889999999999999999999999999977 3456677777788889999999999999
Q ss_pred Hhhh
Q 005474 471 RLPE 474 (695)
Q Consensus 471 ~m~~ 474 (695)
++.+
T Consensus 612 rll~ 615 (777)
T KOG1128|consen 612 RLLD 615 (777)
T ss_pred HHHH
Confidence 8874
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0025 Score=70.11 Aligned_cols=144 Identities=10% Similarity=0.035 Sum_probs=75.2
Q ss_pred HhhHHHHHHHhCCCCCHHHHH----HHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005474 116 EDDVFSVLRCLGDDFLEQDCV----IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDM 191 (695)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 191 (695)
...+...++....++...-+- .+++...+..+|.+.|+.+... ..-+...+....+.|++..+++.|..+.-..
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 334444555554444433322 2233333466777777777654 2346777888888898888888888773222
Q ss_pred HHcCCCCCHHHHHHHHH--HHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005474 192 LDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263 (695)
Q Consensus 192 ~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 263 (695)
-+.. +.-...+|-+-. .|...++...|+..|+...+.. +.|...|..+..+|.+.|++..|.++|.+...
T Consensus 553 ~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 553 AQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 1110 001111222111 3344455555555555554421 12455555566666666666666666655543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0091 Score=65.24 Aligned_cols=219 Identities=14% Similarity=0.057 Sum_probs=113.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 005474 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVF--RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221 (695)
Q Consensus 144 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 221 (695)
+...|+.....+.++. ||.. |..++.++ .+.|+.++|..+++.....+.. |..|..++-.+|...++.++|..
T Consensus 24 qfkkal~~~~kllkk~---Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKH---PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHC---CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 3677777777777664 3332 33444444 5677777887777776655433 77777777777888888888888
Q ss_pred HHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-Ch---------HHHHH
Q 005474 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NF---------DGCLN 291 (695)
Q Consensus 222 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~---------~~A~~ 291 (695)
+|+..... -|+......+..+|.|.+++.+-.++--+|-+. ++-+...+=++++.+...- .. .-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 87777653 466666667777777777665443333333221 1233344334444443321 11 12333
Q ss_pred HHHHHHHcC-CCCCHHhHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005474 292 VYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKTIYK-EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369 (695)
Q Consensus 292 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (695)
.++.+.+.+ ---+..-...-...+-..|++++|.+++. ...+.-..-+...-+.-++.+...+++.+..++-.++..+
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 333333332 10011111122233344555566655552 2222222223333344455555555555555555555555
Q ss_pred C
Q 005474 370 G 370 (695)
Q Consensus 370 ~ 370 (695)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 4
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.9e-05 Score=79.03 Aligned_cols=96 Identities=17% Similarity=0.045 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCccc-cchHHHHH
Q 005474 479 PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKK-AYCNCLID 555 (695)
Q Consensus 479 pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~-~~~~~L~~ 555 (695)
+|..+...|.-.|...|. +.+...|+.++..+|++..++|-||-.++- |.+-+||+.-++++ ...|.- .++--|+-
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsAY~rALqLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISAYNRALQLQPGYVRVRYNLGI 506 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence 333333444334444444 555555555555555555555555554432 22445555544433 333332 13334555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 005474 556 LCVNLNLLENACKLLELGLT 575 (695)
Q Consensus 556 ~~~~~g~~~~A~~~l~~~~~ 575 (695)
.|...|.+++|.+.|-.++.
T Consensus 507 S~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHH
Confidence 56666666666666655553
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00013 Score=70.89 Aligned_cols=186 Identities=10% Similarity=0.007 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HhH
Q 005474 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP---NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM--ITY 308 (695)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~ 308 (695)
....+..+...+...|++++|...|+++.... +.+. .++..+...|.+.|++++|+..++++.+....... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34455556666666666776666666665542 1111 34555666666667777777777766654221111 123
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 005474 309 NNLLDTMGRA--------KRPWQVKTIYKEMTDNGLSPNW-NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379 (695)
Q Consensus 309 ~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 379 (695)
..+..++... |++++|.+.|+.+.+.. |+. ..+..+..... .. .... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~------~~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LR------NRLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HH------HHHH--------HHHH
Confidence 3333333332 55666777777666543 222 11111111000 00 0000 0112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005474 380 TLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440 (695)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (695)
.+...|.+.|++++|+..++...+...- +.....+..+..++.+.|+.++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455677778888888777777664210 123466777777777888888888777777653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00018 Score=69.93 Aligned_cols=187 Identities=12% Similarity=-0.002 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--
Q 005474 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW-- 340 (695)
Q Consensus 267 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-- 340 (695)
......+..+...+.+.|++++|...|+++.... |+ ..++..+..++.+.|++++|...++++.+.......
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456677778888888899999999888887653 32 235666777888888888888888888765422111
Q ss_pred HHHHHHHHHHHhC--------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHH
Q 005474 341 NTYASLLRAYGRA--------RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412 (695)
Q Consensus 341 ~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 412 (695)
.++..+..++.+. |+.++|.+.|+.+.+.... +...+..+..... ... ... .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~---------~ 167 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA---------G 167 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH---------H
Confidence 1344444445443 5667777777777665322 2222221111100 000 000 0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhC
Q 005474 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGF-EP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475 (695)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 475 (695)
....+...|.+.|++++|...+++..+... .| ....+..+..++.+.|++++|..+++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 012445567788888888888888876421 12 3567778888888888888888888877643
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00034 Score=78.48 Aligned_cols=220 Identities=11% Similarity=0.145 Sum_probs=120.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCChhHHHHHHHhchhC-C----------
Q 005474 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSF-G---------- 230 (695)
Q Consensus 163 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~-g---------- 230 (695)
.+...+..|+..+...+++++|.++.+...+. .|+...+..+. ..+.+.++.+++.-+ .+... .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 35667888888888888888888888866654 44443332222 245555555544433 22111 0
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 005474 231 -------CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303 (695)
Q Consensus 231 -------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 303 (695)
..-+...+..+..+|-+.|+.++|.++|+++++.. +-|+.+.|.+...|... ++++|++++.+....
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---- 178 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---- 178 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----
Confidence 01122345555566666666666666666666655 44566666666666666 666666666655442
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 005474 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLL 382 (695)
Q Consensus 304 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li 382 (695)
+...+++..+.+++.++.... |+ +++.-..+.+.+... |..--..++-.+-
T Consensus 179 -----------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 179 -----------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred -----------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 344445555555555555432 11 112222222222221 2222234445555
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHH
Q 005474 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422 (695)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 422 (695)
..|-...+++++..+++.+.+.. +.|.....-++..|.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence 66667777778888888777765 456666666666665
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00095 Score=74.99 Aligned_cols=148 Identities=12% Similarity=0.144 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005474 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386 (695)
Q Consensus 307 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 386 (695)
.+..+..+|-+.|+.+++..+++++.+.. +-|..+.|.+...|... ++++|++++.+.... +.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 44445555555555555555555555544 22444555555555555 555555544443332 33
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhHH
Q 005474 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDV 465 (695)
Q Consensus 387 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A 465 (695)
..+++..+.+++.++.... .. +++.-.++.+.+... |..--+.++..+-..|-..++|+++
T Consensus 181 ~~kq~~~~~e~W~k~~~~~--~~----------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYN--SD----------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred hhhcchHHHHHHHHHHhcC--cc----------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 3445555555555554432 11 222223333333332 3333445566666777788888888
Q ss_pred HHHHHHhhhCCCCC-CHHHHHHHHHHH
Q 005474 466 VRALNRLPELGITP-DDRFCGCLLNVM 491 (695)
Q Consensus 466 ~~~~~~m~~~g~~p-d~~~~~~ll~~~ 491 (695)
+.+|+...+. .| |.....-++.+|
T Consensus 243 i~iLK~iL~~--~~~n~~a~~~l~~~y 267 (906)
T PRK14720 243 IYILKKILEH--DNKNNKAREELIRFY 267 (906)
T ss_pred HHHHHHHHhc--CCcchhhHHHHHHHH
Confidence 8888888754 33 333444444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00022 Score=75.54 Aligned_cols=220 Identities=13% Similarity=0.052 Sum_probs=172.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005474 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346 (695)
Q Consensus 267 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 346 (695)
+|-...-..+...+...|-...|+.+|++.. .|.-+|.+|+..|+..+|..+..+..+ -+||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3444444567788889999999999998765 466688899999999999999988877 36889999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCC
Q 005474 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426 (695)
Q Consensus 347 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 426 (695)
.+......-+++|.++++..-.+ .-..+.......++++++.+.|+.-.+.+ +--..+|-.+-.+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhh
Confidence 99988888899999999876543 11111222234789999999999887765 4567788888888899999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHH
Q 005474 427 VSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 504 (695)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~ 504 (695)
++.|.+.|..-.. ..| +...||.+-.+|.+.|+-.+|...+++..+.+..+ -..|.-.+......|. ++|.+.+.
T Consensus 535 ~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-CeeeechhhhhhhcccHHHHHHHHH
Confidence 9999999999887 456 56789999999999999999999999999877443 3334434444566677 99999888
Q ss_pred HHHHc
Q 005474 505 CVEKS 509 (695)
Q Consensus 505 ~~~~~ 509 (695)
++..+
T Consensus 612 rll~~ 616 (777)
T KOG1128|consen 612 RLLDL 616 (777)
T ss_pred HHHHh
Confidence 87753
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00031 Score=65.75 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 005474 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353 (695)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 353 (695)
..+-..+...|+-+....+........ .-|.......+....+.|++.+|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 334445555555555555555543221 1233344445555666666666666666665432 34666666666666666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005474 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433 (695)
Q Consensus 354 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 433 (695)
|+++.|..-|.+..+.... +...+|.|.-.|.-.|+++.|..++......+ .-|...-..+.-.....|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 6666666666666554332 34445555555666666666666666665544 34555555565566666666666665
Q ss_pred HHH
Q 005474 434 FNE 436 (695)
Q Consensus 434 ~~~ 436 (695)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.011 Score=65.27 Aligned_cols=246 Identities=15% Similarity=0.186 Sum_probs=159.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005474 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256 (695)
Q Consensus 177 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 256 (695)
.++-+++|..+|+..- .+....+.||.- -+..+.|.++-++.. .+.+|..+..+-.+.|.+.+|++
T Consensus 1060 ~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHH
Confidence 3444555555554431 233333444331 234445544443332 45678888888888898888887
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005474 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336 (695)
Q Consensus 257 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 336 (695)
-|-+. -|+..|..++....+.|.|++-.+++...++..-.|.+. +.||-+|++.++..+.++++ .
T Consensus 1126 Syika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-----~-- 1190 (1666)
T KOG0985|consen 1126 SYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-----A-- 1190 (1666)
T ss_pred HHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-----c--
Confidence 66543 477889999999999999999999888777766555544 46888999999988766654 2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHH
Q 005474 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416 (695)
Q Consensus 337 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 416 (695)
-||......+.+-|...|.++.|.-+|.. +..|..|...+...|++..|.+--++. .+..||..
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~ 1254 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKE 1254 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHH
Confidence 37777778888888888999888877764 345666777788888888777654433 34556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
+-.+|...+.+.-| +|...++-....-..-++.-|-..|.+++.+.+++..
T Consensus 1255 VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1255 VCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 66666555444322 2332223333444555666666666666666666544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00083 Score=62.86 Aligned_cols=171 Identities=18% Similarity=0.195 Sum_probs=87.9
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005474 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336 (695)
Q Consensus 257 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 336 (695)
+.+.+......-+......-...|++.|++++|++..+... +......=...+.+..+.+.|.+.++.|.+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 33444433333333333333445666667777766665521 2222222233445556666666666666653
Q ss_pred CCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHH
Q 005474 337 SPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412 (695)
Q Consensus 337 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 412 (695)
.+..|.+-|..+|.+ .+.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|..++++..... ..+..
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpe 242 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPE 242 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHH
Confidence 244555555555433 34566666666666553 44566666666666666666666666666666554 34455
Q ss_pred HHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 005474 413 TFSSMITICSCRGKVSE-AEAMFNEMLE 439 (695)
Q Consensus 413 ~~~~li~~~~~~g~~~~-A~~~~~~m~~ 439 (695)
+...+|..-...|.-.+ ..+.+.++..
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 55544444444444322 2333444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0011 Score=61.65 Aligned_cols=189 Identities=19% Similarity=0.174 Sum_probs=132.8
Q ss_pred CChHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005474 319 KRPWQVKTIYKEMTD---NG-LSPNWN-TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393 (695)
Q Consensus 319 g~~~~a~~~~~~m~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (695)
.+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++.+..+-.. +..+-..-.--+...|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchhh
Confidence 355666666666543 23 334433 3444555666778888888888888765321 22221111222445788999
Q ss_pred HHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 394 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
|+++++.+.+.+ +.|..++-.-+...-..|+--+|++-+.+..+. +..|...|.-+...|...|+++.|.-.+++++
T Consensus 105 A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999998876 678888877777777788888888888887774 45699999999999999999999999999998
Q ss_pred hCCCCC-CHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCh
Q 005474 474 ELGITP-DDRFCGCLLNVMTQTPK----EELGKLVECVEKSNSKL 513 (695)
Q Consensus 474 ~~g~~p-d~~~~~~ll~~~~~~~~----~~a~~~~~~~~~~~p~~ 513 (695)
- +.| +...|..+...+.-.|. +-+.+++.+..+++|.+
T Consensus 182 l--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 182 L--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred H--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 4 356 55566666665544443 77888999999998843
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0004 Score=65.01 Aligned_cols=120 Identities=13% Similarity=0.023 Sum_probs=65.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhCCC--hHHH
Q 005474 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARY--GEDT 359 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~--~~~A 359 (695)
.++.+++...++...+... .|...|..+...|...|++++|...|+...+... .+...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3444555555555444432 2455555555666666666666666665555432 244444444443 244444 3666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 005474 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405 (695)
Q Consensus 360 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 405 (695)
.+++++..+.+.. +...+..+...+.+.|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666655443 44555556666666666666666666665544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0023 Score=65.20 Aligned_cols=138 Identities=13% Similarity=0.008 Sum_probs=94.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005474 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394 (695)
Q Consensus 315 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 394 (695)
+...|++++|+..++.+.+.- +.|........+.+.+.++.++|.+.++.+......- ....-.+..+|.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHH
Confidence 445677777777777766542 2345555566677777777777777777777653321 44455567777777888888
Q ss_pred HHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 395 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
+.+++...... +-|...|..|.++|...|+..++..-..++.. ..|++++|+..+....+
T Consensus 394 i~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 394 IRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHHHHHHH
Confidence 87777777654 56777778888888888887777776666642 45777777777776654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00063 Score=63.71 Aligned_cols=124 Identities=15% Similarity=0.038 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 005474 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316 (695)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 316 (695)
..+.++....+.|++..|...+.+..... ++|..+|+.+.-+|.+.|++++|..-|.+..+... -+...++.|...|.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~ 179 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLL 179 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHH
Confidence 33334444444455555555554444332 44444455555555555555555444444444311 12333444444444
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 005474 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363 (695)
Q Consensus 317 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 363 (695)
-.|+.+.|..++......+.. |..+-..+.......|++++|.++.
T Consensus 180 L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 444444444444444443221 3333333444444444444444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00066 Score=63.53 Aligned_cols=117 Identities=14% Similarity=0.172 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 005474 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC-ADVGY--TDEAF 395 (695)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~ 395 (695)
++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 33344444444443332 224444444445555555555555555544443322 333344344332 33333 24455
Q ss_pred HHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005474 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 396 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (695)
+++++..+.+ +.+...+..+...+.+.|++++|...|+++.+
T Consensus 131 ~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555444433 23444444444444444444444444444444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0013 Score=73.19 Aligned_cols=213 Identities=15% Similarity=0.093 Sum_probs=148.0
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 005474 237 TYSSMIDAYGRAGNVEMA-FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315 (695)
Q Consensus 237 ~~~~li~~~~~~g~~~~A-~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 315 (695)
....+=.+...-|.-++| .++++++.+ ++..........+++.-....... ...+...+..|....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~i~ 96 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVARAL 96 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHHHH
Confidence 333334445556766665 345555442 222222223333333333333332 334688888999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005474 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395 (695)
Q Consensus 316 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 395 (695)
.+.|++++|..+++...+.. +.+......+...+.+.+++++|+..+++....... +....+.+..++.+.|++++|.
T Consensus 97 ~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~ 174 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQAD 174 (694)
T ss_pred HHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHH
Confidence 99999999999999998853 224566677888899999999999999999887654 6677778888999999999999
Q ss_pred HHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 396 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
.+|+++...+ .-+..++..+..++-+.|+.++|...|++..+. ..+....|+.++. +...-..+++++.
T Consensus 175 ~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~ 243 (694)
T PRK15179 175 ACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------DLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------HHHHHHHHHHHcC
Confidence 9999998843 455888999999999999999999999999874 2345555555443 2333445566554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0018 Score=72.11 Aligned_cols=183 Identities=9% Similarity=0.054 Sum_probs=142.1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005474 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344 (695)
Q Consensus 266 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 344 (695)
...+..++-.|.....+.|++++|+.+++...+. .|+ ......+...+.+.+++++|...+++...... -+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHH
Confidence 3567889999999999999999999999999986 454 66777888999999999999999999998753 3566777
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHc
Q 005474 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424 (695)
Q Consensus 345 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 424 (695)
.+..++.+.|++++|..+|+++...+. -+..++..+...+...|+.++|...|+...+.. .+....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~--~~~~~~~~~~~~----- 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI--GDGARKLTRRLV----- 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CcchHHHHHHHH-----
Confidence 888889999999999999999998443 357888889999999999999999999998765 466666665542
Q ss_pred CCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcC
Q 005474 425 GKVSEAEAMFNEMLEA----GFEPNLFVLTSLIQCYGKAQ 460 (695)
Q Consensus 425 g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g 460 (695)
++..-...++++.-. |....+.....+|.-|.+..
T Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 231 -DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred -HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 333344455555332 33334556666676666544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0002 Score=63.23 Aligned_cols=90 Identities=8% Similarity=-0.102 Sum_probs=44.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005474 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460 (695)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 460 (695)
+...+...|++++|...|+...... +.+...|..+...+.+.|++++|...|++..+.. +.+...+..+..++...|
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 4444455555555555555554433 3344455555555555555555555555555422 114444445555555555
Q ss_pred CHhHHHHHHHHhh
Q 005474 461 RTDDVVRALNRLP 473 (695)
Q Consensus 461 ~~~~A~~~~~~m~ 473 (695)
+.++|+..|+..+
T Consensus 107 ~~~eAi~~~~~Al 119 (144)
T PRK15359 107 EPGLAREAFQTAI 119 (144)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0097 Score=65.68 Aligned_cols=181 Identities=14% Similarity=0.103 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005474 145 PDTAALALTYFTNKLKASKE-VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 223 (695)
...|+..|-...+ ..++ ...|..|...|+...+...|.+.|+...+.. .-|...+......|+...+++.|..+.
T Consensus 474 ~~~al~ali~alr---ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 474 SALALHALIRALR---LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHHh---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 3445554444433 3343 5678888888988888888999998877652 235566777888899999999988873
Q ss_pred HhchhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005474 224 ERMPSFG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302 (695)
Q Consensus 224 ~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 302 (695)
-..-+.. ...-...|....-.|.+.++...|..-|+...... +-|...|..++.+|.+.|++..|+++|.+.... +
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 2222110 00111223334455677888888988888888665 557788999999999999999999999888775 3
Q ss_pred CCHHhHHH--HHHHHHhcCChHHHHHHHHHHHH
Q 005474 303 PNMITYNN--LLDTMGRAKRPWQVKTIYKEMTD 333 (695)
Q Consensus 303 p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~ 333 (695)
|+. +|.. ....-+..|++.++...+.....
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 432 2222 23345678889988888887654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.8e-05 Score=79.01 Aligned_cols=121 Identities=14% Similarity=0.134 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005474 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452 (695)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 452 (695)
+......+++.+....+++++..++.+.+....+ ..-..|..++|+.|.+.|..+++..+++.=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444444444444444455555555444433110 112233345555555555555555555555555555555555555
Q ss_pred HHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC
Q 005474 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494 (695)
Q Consensus 453 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~ 494 (695)
++.+.+.|++..|.++..+|...+.-.+..|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 555555555555555555555444444444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00092 Score=68.03 Aligned_cols=137 Identities=16% Similarity=0.093 Sum_probs=93.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCH-HH
Q 005474 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EE 498 (695)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~ll~~~~~~~~-~~ 498 (695)
+...|++++|+..++.++... +-|...+....+.+.+.|+.++|.+.+++++.. .|+ ......+..++.+.|+ .+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 445677777777777776632 225555555666777777777777777777744 555 3344555566777777 77
Q ss_pred HHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005474 499 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 576 (695)
Q Consensus 499 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~ 576 (695)
+.++++.....+|++...+++|++.|.+.| ...+|. .+....++..|+++.|...+..+.+.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g-~~~~a~---------------~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELG-NRAEAL---------------LARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhC-chHHHH---------------HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 777777777778888888888888777666 333322 25667788888999998888888765
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00041 Score=61.29 Aligned_cols=89 Identities=9% Similarity=-0.051 Sum_probs=41.6
Q ss_pred HHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChH
Q 005474 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287 (695)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 287 (695)
..+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++..... +.+...+..+..++.+.|+++
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 34444444444444444444321 1234444444444555555555555555554433 334444444444555555555
Q ss_pred HHHHHHHHHHH
Q 005474 288 GCLNVYEEMKA 298 (695)
Q Consensus 288 ~A~~~~~~m~~ 298 (695)
+|+..|+....
T Consensus 110 eAi~~~~~Al~ 120 (144)
T PRK15359 110 LAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHH
Confidence 55555554444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0004 Score=71.30 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=91.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHH
Q 005474 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422 (695)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 422 (695)
...|+..+...++++.|.++|+++.+.. |+ ....+++.+...++-.+|.+++++..+.. +-+......-...+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3455666666777888888888887764 33 33446777777777888888888877654 456666676777788
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 423 CRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
+.++.+.|.++.+++.+ ..| +..+|..|..+|.+.|++++|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888887 345 55688888888888899998888888764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.039 Score=57.11 Aligned_cols=411 Identities=14% Similarity=0.159 Sum_probs=212.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHH---
Q 005474 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM-NNLPNKAV--- 220 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~--- 220 (695)
.+++.+.++.+.... +-....|..-|..-.+.++++..+.+|.+.+.. ..+...|...|.--.+ .++...+.
T Consensus 35 ~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 35 IDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred HHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcchHHHHH
Confidence 678889999887763 445667999999999999999999999998876 3467777777763332 34433322
Q ss_pred -HHHHh-chhCCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHhhCCCCCCHHHHH------HHHHHH--
Q 005474 221 -EWFER-MPSFGCDP-DALTYSSMIDA---------YGRAGNVEMAFGLYDRARNEKWRIDPNAFS------TLIKLY-- 280 (695)
Q Consensus 221 -~~~~~-m~~~g~~p-~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~------~li~~~-- 280 (695)
+.|+- |.+.|+.+ +-..|+..+.. |....+++...++|+++...-+.-=...|+ .=|+..
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~ta 190 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITA 190 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 23332 23445443 23344544433 333445777888888887642111111221 111111
Q ss_pred -----HHcCChHHHHHHHHHHHH--cCCCCCHHh---------------HHHHHHHHHhcC------Ch--HHHHHHHHH
Q 005474 281 -----GTAGNFDGCLNVYEEMKA--IGVKPNMIT---------------YNNLLDTMGRAK------RP--WQVKTIYKE 330 (695)
Q Consensus 281 -----~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~~g------~~--~~a~~~~~~ 330 (695)
-+...+..|.++++++.. .|...+..+ |..+|.-=-.++ .. ....-++++
T Consensus 191 rK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ 270 (656)
T KOG1914|consen 191 RKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQ 270 (656)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHH
Confidence 123456677777777643 233222211 333332111111 00 011111222
Q ss_pred H-HHCCCCCCHHHH-HH----HHHHHHhCCC-------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHH
Q 005474 331 M-TDNGLSPNWNTY-AS----LLRAYGRARY-------GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG---YTDEA 394 (695)
Q Consensus 331 m-~~~~~~~~~~~~-~~----li~~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A 394 (695)
. .-.+..|+.-.. .. .-+.+...|+ -+++..+++...+.-..-+..+|..+.+--...- ..+..
T Consensus 271 ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~ 350 (656)
T KOG1914|consen 271 CLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKV 350 (656)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhh
Confidence 1 112222222110 00 1112222222 4566677776554333334555554443222221 25556
Q ss_pred HHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 395 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
..+++++.......| ..+|..+|..-.+..-+..|..+|.+..+.+..+ ++.++++++.-||. ++.+-|.++|+--+
T Consensus 351 ~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGL 428 (656)
T KOG1914|consen 351 HEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGL 428 (656)
T ss_pred HHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHH
Confidence 666666655443233 3456777777777777788888888887766666 66777777776653 66677888887644
Q ss_pred -hCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc--CCCh-hHHHHHHhhhhcchhhHHHHHHHHHHhc----c--
Q 005474 474 -ELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS--NSKL-GYVVKLLLEEQDIEGDFKKEATELFNSI----S-- 542 (695)
Q Consensus 474 -~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~--~p~~-~~~~~~l~~~~~~~g~~~~eA~~l~~~~----~-- 542 (695)
..|-. ...-...++-+.+.++ ..+..+|+.++.. .|+- ..+++-+......-| .+.-+.++-++. +
T Consensus 429 kkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG-dL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 429 KKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG-DLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhcchh
Confidence 33322 2333344555566666 6677777777654 3321 234443333333335 556666654433 2
Q ss_pred cCccccchHHHHHHHHhcCCHH
Q 005474 543 KDVKKAYCNCLIDLCVNLNLLE 564 (695)
Q Consensus 543 ~~~~~~~~~~L~~~~~~~g~~~ 564 (695)
.++....-..+++-|.-.+.+.
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hcCCCChHHHHHHHHhhccccc
Confidence 2222223334555555555544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00047 Score=60.32 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005474 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455 (695)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 455 (695)
.....+...+.+.|++++|.+.++.+...+ +.+...+..+...+.+.|++++|..++++..+.+ +.+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 334445555666666666666666665543 3455666666666666666666666666665532 2245555555666
Q ss_pred HHHcCCHhHHHHHHHHhhhC
Q 005474 456 YGKAQRTDDVVRALNRLPEL 475 (695)
Q Consensus 456 ~~~~g~~~~A~~~~~~m~~~ 475 (695)
|...|++++|+..|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.9e-05 Score=50.44 Aligned_cols=33 Identities=36% Similarity=0.704 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD 199 (695)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 199 (695)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777766
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.01 Score=55.34 Aligned_cols=187 Identities=11% Similarity=0.032 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHHc---C-CCCCHHH-HHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005474 179 RDLDKAERLFDDMLDR---G-VKPDNVT-FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253 (695)
Q Consensus 179 g~~~~A~~l~~~m~~~---g-~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 253 (695)
.+.++..+++.++... | ..++..+ |.-++-+....|+.+.|...++.+... ++-+..+-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 3555666666555432 2 3344432 333444555666666666666665543 22222222222222334566777
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005474 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333 (695)
Q Consensus 254 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 333 (695)
|+++|+.+++.+ +.|.+++-.-+...-..|+--+|++-+.+..+. +.-|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777776655 455566665555555666666666666666554 334666677777777777777777766666665
Q ss_pred CCCCCCHHHHHHHHHHHHh---CCChHHHHHHHHHHHHc
Q 005474 334 NGLSPNWNTYASLLRAYGR---ARYGEDTLSVYREMKEK 369 (695)
Q Consensus 334 ~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 369 (695)
.. +.+...+..+.+.+.- ..+++.+.++|.+..+.
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 32 1233333333333322 22344555666655554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.2e-05 Score=50.07 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCC
Q 005474 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480 (695)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 480 (695)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666667777777777777776666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.5e-05 Score=49.51 Aligned_cols=33 Identities=42% Similarity=0.679 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 005474 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKP 198 (695)
Q Consensus 166 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 198 (695)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00049 Score=70.71 Aligned_cols=126 Identities=15% Similarity=0.179 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246 (695)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 246 (695)
.-..++..+...++++.|+++|+++.+.. |+ ....+++.+...++-.+|++++++..+.. +-|...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666677788888888888888763 44 33456677777888888888888877542 336666777777788
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 247 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
+.++++.|+++.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888888888888888763 34455888888888888888888888877653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0011 Score=58.09 Aligned_cols=96 Identities=11% Similarity=0.116 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHH
Q 005474 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420 (695)
Q Consensus 341 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 420 (695)
.....+...+.+.|++++|.+.|+.+.+.+.. +...+..+...+.+.|++++|..+++...+.+ +.+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 33444555566666677777666666654422 55556666666666677777777776666544 4455666666666
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 005474 421 CSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~ 439 (695)
|...|+.++|.+.|++..+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6777777777777776666
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.2e-05 Score=48.47 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC
Q 005474 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479 (695)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 479 (695)
+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.062 Score=53.39 Aligned_cols=222 Identities=13% Similarity=-0.005 Sum_probs=133.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHH--HHHHHHH---HcCC
Q 005474 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS--SMITICS---CRGK 426 (695)
Q Consensus 352 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~--~li~~~~---~~g~ 426 (695)
+.|+.+.|..+-+..-+.-.. -...+.+.+...+..|+++.|+++++.-+...++.++..--. .|+.+-. -..+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 445555555555554443222 234455566666666666666666665555444344433221 2222111 1223
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH--HHHHHHH
Q 005474 427 VSEAEAMFNEMLEAGFEPNLFVLT-SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKLV 503 (695)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~--~~a~~~~ 503 (695)
...|...-.+..+ +.||..--. .-..+|.+.|+..++-.+++.+-+....|+.. . +....+.|+ .+-.+-.
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGDTALDRLKRA 318 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCCcHHHHHHHH
Confidence 4555555555554 456654332 33467889999999999999999876666543 2 223456666 4444555
Q ss_pred HHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCccccchHHHHHHHHhc-CCHHHHHHHHHHHHHcCcccC
Q 005474 504 ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVNL-NLLENACKLLELGLTLEVYTD 581 (695)
Q Consensus 504 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~~~~~L~~~~~~~-g~~~~A~~~l~~~~~~~~~~~ 581 (695)
+.+..+.|++....-...+...+.| .+..|+.--+.. ...|...+|.-|.++-... |+-.+++..+-++++.--.|.
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~-e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAG-EFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhcc-chHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 6677788888776666665554445 455555444433 4567778998899887666 999999999999986554444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0021 Score=56.98 Aligned_cols=124 Identities=17% Similarity=0.209 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCChhHHHHHHHhchhCCCCCC--HHHHHHHH
Q 005474 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVT---FSTLISCARMNNLPNKAVEWFERMPSFGCDPD--ALTYSSMI 242 (695)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li 242 (695)
|..++..+ ..++...+...++.+.... +.+... .-.+...+...|++++|...|+........++ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444444 3556666666666666542 111111 11222355556666666666666555431111 11223344
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005474 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295 (695)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (695)
..+...|++++|+..++..... ......+..+...|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555556666666665543322 22333444555555556666666555543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00055 Score=70.66 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 005474 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE--KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309 (695)
Q Consensus 232 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 309 (695)
..+......+++.+....+++.+..++-+.... ....-..|..++|+.|.+.|..++++++++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345555566666666666677777776666654 222233445577777777777777777777777777777777777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 005474 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353 (695)
Q Consensus 310 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 353 (695)
.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777766665555666665555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0038 Score=55.30 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=34.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcC
Q 005474 348 RAYGRARYGEDTLSVYREMKEKGMQLSV--TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425 (695)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 425 (695)
..+...|++++|...|+.+......+.. .....|...+...|++++|+..++..... ......+....+.|.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCC
Confidence 3444445555555555544443311111 12222344444455555555555443221 122233334444444444
Q ss_pred CHHHHHHHHH
Q 005474 426 KVSEAEAMFN 435 (695)
Q Consensus 426 ~~~~A~~~~~ 435 (695)
+.++|...|+
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 4444444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0093 Score=59.53 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHHcCCHhHHHHHHHHhhhC--CCCCC--HHHH
Q 005474 415 SSMITICSCRGKVSEAEAMFNEMLEAGFE-----PNLF-VLTSLIQCYGKAQRTDDVVRALNRLPEL--GITPD--DRFC 484 (695)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd--~~~~ 484 (695)
..+...+.+.|++++|.++|++....... .+.. .|...+-++...|+...|.+.|++.... ++..+ ..+.
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 34445556666666666666665543221 1111 2222333455566777777777766532 22222 2345
Q ss_pred HHHHHHHhcCCH---HHHHHHHHHHH
Q 005474 485 GCLLNVMTQTPK---EELGKLVECVE 507 (695)
Q Consensus 485 ~~ll~~~~~~~~---~~a~~~~~~~~ 507 (695)
..|+.++..... .++..-|+.+.
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 555555544332 44444444433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00011 Score=45.33 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRG 195 (695)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 195 (695)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0027 Score=60.81 Aligned_cols=98 Identities=18% Similarity=0.117 Sum_probs=67.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCH-HHHHHHHHHHhcCCH-H
Q 005474 421 CSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPK-E 497 (695)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~ll~~~~~~~~-~ 497 (695)
..+.+++++|+..|.+.++ +.| |.+.|..=..+|.+.|.++.|++-.+..+. +.|.. ..|..|..++...|+ +
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 4566777778887777777 344 556666667777788888877777777663 35543 367777777777777 7
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHhh
Q 005474 498 ELGKLVECVEKSNSKLGYVVKLLLE 522 (695)
Q Consensus 498 ~a~~~~~~~~~~~p~~~~~~~~l~~ 522 (695)
+|.+.|++.++++|++..+...|..
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHH
Confidence 7777777777777777755554433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0029 Score=57.92 Aligned_cols=88 Identities=26% Similarity=0.389 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------CCHhHHHH
Q 005474 409 PDSWTFSSMITICSC-----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA----------------QRTDDVVR 467 (695)
Q Consensus 409 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g~~~~A~~ 467 (695)
.|..+|..+|+.|.+ .|.++=....++.|.+.|+..|..+|+.|++.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 344455555555443 244444455555555556655666666665555331 23467999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhcCCH
Q 005474 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK 496 (695)
Q Consensus 468 ~~~~m~~~g~~pd~~~~~~ll~~~~~~~~ 496 (695)
++++|...|+.||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999999988775
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0022 Score=51.85 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=21.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHh
Q 005474 277 IKLYGTAGNFDGCLNVYEEMKAIGV-KPNMITYNNLLDTMGR 317 (695)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~ 317 (695)
|.-+...+++.....+|+.+++.|+ .|++.+|+.++.+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 3334444555555555555555555 5555555555554443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00011 Score=45.22 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhhCC
Q 005474 448 VLTSLIQCYGKAQRTDDVVRALNRLPELG 476 (695)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 476 (695)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0016 Score=59.52 Aligned_cols=105 Identities=15% Similarity=0.252 Sum_probs=65.9
Q ss_pred CCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHH
Q 005474 162 SKEVILYNVTMKVFRK-----CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236 (695)
Q Consensus 162 ~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 236 (695)
..|-.+|..+++.|.+ .|..+-....++.|.+-|+.-|..+|+.||+++=+ |.+ .|...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------ccccH
Confidence 4567777777777754 36777778888899999999999999999987653 221 11111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 005474 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285 (695)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 285 (695)
+.++..-| -.+.+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 108 -fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 -FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111111 12345566666666666666666666666666655443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0021 Score=52.01 Aligned_cols=79 Identities=15% Similarity=0.305 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHcCCCCCHHHHH
Q 005474 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRAR--------YGEDTLSVYREMKEKGMQLSVTLYN 379 (695)
Q Consensus 309 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~ 379 (695)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|++|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666778888888888888877 777888887777766543 2334455566666666666666666
Q ss_pred HHHHHHHh
Q 005474 380 TLLAMCAD 387 (695)
Q Consensus 380 ~li~~~~~ 387 (695)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 66655543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.053 Score=57.60 Aligned_cols=235 Identities=20% Similarity=0.216 Sum_probs=126.2
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHhchhC-CCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 005474 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSF-GCDP--------DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267 (695)
Q Consensus 197 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 267 (695)
.|....|..+.......-.++.|...|-+.... |++. +...-.+=|.+| -|++++|+++|-+|....
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 567777777777666666667777666554331 2210 111111122222 377888888877766432
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 005474 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343 (695)
Q Consensus 268 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 343 (695)
.-|..+.+.|++-...++++. -|-..| ...|+.+.+.+.....|++|.+.|..-...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 235566666776655555432 111111 345666666666666677776666543211
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHH
Q 005474 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423 (695)
Q Consensus 344 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 423 (695)
...+.+|.+..++++-+.+-+.+.+ +....-.+.+++...|.-++|.+.|-+-. .|- +-+..|..
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s-----~pk-----aAv~tCv~ 890 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS-----LPK-----AAVHTCVE 890 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc-----CcH-----HHHHHHHH
Confidence 1244555555555544443333322 44455566777777777777776664432 121 23455666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH--------------HHHHHHHHcCCHhHHHHHHHHhh
Q 005474 424 RGKVSEAEAMFNEMLEAGFEPNLFVLT--------------SLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~~~~--------------~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
..++.+|.++-++..- |.+.+.. --|..+.+.|+.-+|.+++.+|.
T Consensus 891 LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 6666666666554321 2222211 12455667777777777777775
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0052 Score=52.10 Aligned_cols=98 Identities=11% Similarity=0.050 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 005474 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE--PNLFVLTSLIQ 454 (695)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~ 454 (695)
+..+...+.+.|++++|.+.|..+.+...- ......+..+...+.+.|++++|.+.|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344555566666666666666666543210 001234444555566666666666666666553211 11334555555
Q ss_pred HHHHcCCHhHHHHHHHHhhhC
Q 005474 455 CYGKAQRTDDVVRALNRLPEL 475 (695)
Q Consensus 455 ~~~~~g~~~~A~~~~~~m~~~ 475 (695)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 556666666666666665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0041 Score=49.72 Aligned_cols=92 Identities=20% Similarity=0.185 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005474 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458 (695)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 458 (695)
..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.+++..+... .+..++..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 334555555666666666666665543 23335555556666666666666666666655321 233455566666666
Q ss_pred cCCHhHHHHHHHHhh
Q 005474 459 AQRTDDVVRALNRLP 473 (695)
Q Consensus 459 ~g~~~~A~~~~~~m~ 473 (695)
.|++++|...+++..
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 666666666666554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0041 Score=49.72 Aligned_cols=87 Identities=20% Similarity=0.277 Sum_probs=33.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 005474 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321 (695)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 321 (695)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+....... .+..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhH
Confidence 333334444444444444443322 11223333344444444444444444444433221 1222333333344444444
Q ss_pred HHHHHHHHH
Q 005474 322 WQVKTIYKE 330 (695)
Q Consensus 322 ~~a~~~~~~ 330 (695)
+.|...+..
T Consensus 85 ~~a~~~~~~ 93 (100)
T cd00189 85 EEALEAYEK 93 (100)
T ss_pred HHHHHHHHH
Confidence 444444433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0061 Score=60.62 Aligned_cols=136 Identities=10% Similarity=0.144 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005474 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI-CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454 (695)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 454 (695)
.+|..+++..-+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 3456666666666667777777777765442 233333333333 22245555577777777663 3446666777777
Q ss_pred HHHHcCCHhHHHHHHHHhhhCCCCCCH----HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHH
Q 005474 455 CYGKAQRTDDVVRALNRLPELGITPDD----RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 516 (695)
Q Consensus 455 ~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~ 516 (695)
.+.+.|+.+.|..+|++.+.. .|.. ..|...+.--.+.|+ +.+.++.+++.+.-|+...+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 777777777777777776643 2322 367777766666666 66666666666666654333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.16 Score=49.15 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHcC
Q 005474 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF---STLIKLYGTAGNFDGCLNVYEEMKAIG 300 (695)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g 300 (695)
.....+.+.|++++|.+.|+++...- +-+.... -.+..+|.+.+++++|...|++..+..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34445556777777777777777643 1122222 344566677777777777777777653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.1 Score=52.15 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCC----CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HH
Q 005474 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSEN----CQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEA--GFEPN--LF 447 (695)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~ 447 (695)
.+..+...+.+.|++++|.++|+++..... .+.+.. .|...+-.+...|+...|.+.+++.... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 344556667777888888888877765421 011111 2222333455677888888888877653 23222 34
Q ss_pred HHHHHHHHHHH--cCCHhHHHHHHHHhh
Q 005474 448 VLTSLIQCYGK--AQRTDDVVRALNRLP 473 (695)
Q Consensus 448 ~~~~li~~~~~--~g~~~~A~~~~~~m~ 473 (695)
....||.+|-. ...+++|+.-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 55666666643 345556666666554
|
|
| >PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0014 Score=51.57 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=53.8
Q ss_pred eccccCChHHHHHHHHHHHHHHHHHHhcCCCCCCeeEEEeecccccccchhHHHHHHHHhhhcCCCCcc---------CC
Q 005474 592 LHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHD---------SP 662 (695)
Q Consensus 592 ~~l~~~s~G~~~~a~~~w~~~~~~~~~~g~~~p~~~~i~~g~~~~~~~~~~~~~~i~~~l~~~~~pf~~---------~~ 662 (695)
+|||+|+...|..++..++...+.. + -..+.|+||.|.||.... ++..|...|.+ +..+.. ..
T Consensus 1 iDLHG~~~~eA~~~l~~~l~~~~~~---~---~~~~~II~G~G~hS~~g~-Lk~~V~~~L~~-~~~~~~v~~~~~~~~~~ 72 (83)
T PF01713_consen 1 IDLHGLTVEEALRALEEFLDEARQR---G---IRELRIITGKGNHSKGGV-LKRAVRRWLEE-GYQYEEVLAYRDAEPED 72 (83)
T ss_dssp EE-TTS-HHHHHHHHHHHHHHHHHT---T---HSEEEEE--STCTCCTSH-HHHHHHHHHHH-THCCTTEEEEEE--CCC
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHc---C---CCEEEEEeccCCCCCCCc-HHHHHHHHHHh-hhccchhheeeecCCCC
Confidence 4899999999999999999887764 1 166899999999998754 99999999988 655554 34
Q ss_pred CCcceEEEe
Q 005474 663 DKVGWFLTT 671 (695)
Q Consensus 663 ~~~g~~~~~ 671 (695)
.|.|+++..
T Consensus 73 g~~G~~~V~ 81 (83)
T PF01713_consen 73 GNSGATIVY 81 (83)
T ss_dssp TGGGEEEEE
T ss_pred CCCeEEEEE
Confidence 588988753
|
It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0086 Score=59.56 Aligned_cols=131 Identities=15% Similarity=0.239 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 005474 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244 (695)
Q Consensus 166 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 244 (695)
.+|-.+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 457777777777777777777777776432 1122333322222 22245555577777776653 44566667777777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005474 245 YGRAGNVEMAFGLYDRARNEKWRIDP---NAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 299 (695)
+.+.++.+.|..+|++.... +..+. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777654 22222 36666666666666666666666666553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.014 Score=49.37 Aligned_cols=9 Identities=11% Similarity=0.660 Sum_probs=3.2
Q ss_pred CChHHHHHH
Q 005474 284 GNFDGCLNV 292 (695)
Q Consensus 284 g~~~~A~~~ 292 (695)
|++++|.+.
T Consensus 16 ~~~~~A~~~ 24 (119)
T TIGR02795 16 GDYADAIQA 24 (119)
T ss_pred CCHHHHHHH
Confidence 333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0089 Score=61.72 Aligned_cols=85 Identities=13% Similarity=0.015 Sum_probs=43.0
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHh
Q 005474 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTD 463 (695)
Q Consensus 385 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 463 (695)
+...|++++|++.|+++.+.. +.+...|..+..+|.+.|++++|...++++++.. | +...|..+..+|...|+++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCHH
Confidence 334455555555555555433 3344445555555555555555555555555422 2 3444555555555555555
Q ss_pred HHHHHHHHhh
Q 005474 464 DVVRALNRLP 473 (695)
Q Consensus 464 ~A~~~~~~m~ 473 (695)
+|+..|++.+
T Consensus 88 eA~~~~~~al 97 (356)
T PLN03088 88 TAKAALEKGA 97 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.19 Score=48.78 Aligned_cols=182 Identities=10% Similarity=0.064 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005474 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY---NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346 (695)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 346 (695)
...+-.....+.+.|++++|.+.|+++...-... .... -.+..++.+.+++++|...+++..+....-...-+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3333334455667889999999999888753322 2222 34567778888888888888888775433222333333
Q ss_pred HHHHHh--CC---------------Ch---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC
Q 005474 347 LRAYGR--AR---------------YG---EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406 (695)
Q Consensus 347 i~~~~~--~g---------------~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 406 (695)
+.+.+. .+ +. .+|.+.|++++ .-|=...-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH--
Confidence 333321 10 11 12223333333 2222233334444433333221
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA--GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 407 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
.-..- -.+...|.+.|.+..|..-++.+++. +..........++.+|.+.|..++|..+...+
T Consensus 174 --la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 --LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred --HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 00011 13445577777777777777777763 22224455666677777777777777766554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0045 Score=59.31 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=80.2
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCH
Q 005474 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRT 462 (695)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~ 462 (695)
-..+.+++++|+..|.+..+.. +-|.+.|..-..+|++.|.++.|++-.+..+. +.| -..+|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 3567788999999999988865 56778888888889999999999888888777 445 356888888899999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 005474 463 DDVVRALNRLPELGITPDDRFCGCLLN 489 (695)
Q Consensus 463 ~~A~~~~~~m~~~g~~pd~~~~~~ll~ 489 (695)
++|++.|++.+ .+.|+-.+|..=|.
T Consensus 166 ~~A~~aykKaL--eldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 166 EEAIEAYKKAL--ELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHhhh--ccCCCcHHHHHHHH
Confidence 99999998887 45787777766554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.028 Score=51.44 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHH
Q 005474 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420 (695)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 420 (695)
+..+...|...|++++|...|++..+....+. ...+..+...+.+.|++++|+..+.+..+.. +.+...+..+...
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 34444444555555555555555544322211 2344445555555566666665555555432 2334444444445
Q ss_pred HHHcCCH
Q 005474 421 CSCRGKV 427 (695)
Q Consensus 421 ~~~~g~~ 427 (695)
|...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 5554443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.016 Score=59.85 Aligned_cols=89 Identities=11% Similarity=0.016 Sum_probs=59.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCH
Q 005474 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427 (695)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 427 (695)
..+...|++++|++.|++.++.... +...|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCH
Confidence 3444566777777777776665433 45566666667777777777777777776654 44566666677777777777
Q ss_pred HHHHHHHHHHHH
Q 005474 428 SEAEAMFNEMLE 439 (695)
Q Consensus 428 ~~A~~~~~~m~~ 439 (695)
++|...|++.++
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 777777777766
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.48 Score=48.24 Aligned_cols=419 Identities=11% Similarity=0.069 Sum_probs=223.1
Q ss_pred HHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhch
Q 005474 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227 (695)
Q Consensus 148 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 227 (695)
-+++=+.+.. -+-|..+|-.+|..|..++..++..+++++|..- ++--...|...|.+=...+++.....+|.+..
T Consensus 28 ~lrLRerIkd---NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 28 ELRLRERIKD---NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHHHHhhc---CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 3444444443 2347888999999999999999999999999753 33445678888887777789999999998887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHhh-CCCCC-CHHHHHHHHHHHH---HcCC------hHHHH
Q 005474 228 SFGCDPDALTYSSMIDAYGRAGNVE------MAFGLYDRARN-EKWRI-DPNAFSTLIKLYG---TAGN------FDGCL 290 (695)
Q Consensus 228 ~~g~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~-~g~~~-~~~~~~~li~~~~---~~g~------~~~A~ 290 (695)
...+ +...|...+.-.-+..+.- .-.+.|+-... .++.| ....|+..+..+- ..|. .|...
T Consensus 104 ~k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 104 KKSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred hhhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 7543 4666766666555443211 11223333322 33333 2334555444332 2343 44556
Q ss_pred HHHHHHHHcCCCCCHHhHHH------HHHHHHh-------cCChHHHHHHHHHHHH--CCCC----CCHHHHHHH-----
Q 005474 291 NVYEEMKAIGVKPNMITYNN------LLDTMGR-------AKRPWQVKTIYKEMTD--NGLS----PNWNTYASL----- 346 (695)
Q Consensus 291 ~~~~~m~~~g~~p~~~~~~~------li~~~~~-------~g~~~~a~~~~~~m~~--~~~~----~~~~~~~~l----- 346 (695)
+.+.+|....+.-=...|+- =++-... ..-+-.|...++++.. .|.. .+..+++-+
T Consensus 182 ~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 182 NGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 66667766422111112211 1111100 1123345555655542 2322 122233221
Q ss_pred ------HHHHHhCC------ChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHH-
Q 005474 347 ------LRAYGRAR------YGE-DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW- 412 (695)
Q Consensus 347 ------i~~~~~~g------~~~-~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~- 412 (695)
|+--...| -.. ..--+|++.... +......|----.-+...++-+.|+...+.-... .|...
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~---spsL~~ 337 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM---SPSLTM 337 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC---CCchhe
Confidence 11100000 000 011111111111 0111222222222233456666776665544332 22211
Q ss_pred -----------------HHHHHHHHHHH---cCCHHHHHHH------HHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 005474 413 -----------------TFSSMITICSC---RGKVSEAEAM------FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466 (695)
Q Consensus 413 -----------------~~~~li~~~~~---~g~~~~A~~~------~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 466 (695)
+|..++..+.+ .++-+.+... ..++.-.....=..+|..+++.-.+..-.+.|.
T Consensus 338 ~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR 417 (660)
T COG5107 338 FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR 417 (660)
T ss_pred eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH
Confidence 11111111111 1111111111 111110001112345677788777888889999
Q ss_pred HHHHHhhhCC-CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc----
Q 005474 467 RALNRLPELG-ITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI---- 541 (695)
Q Consensus 467 ~~~~~m~~~g-~~pd~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~---- 541 (695)
.+|-+..+.| +.++...+++++.-++......|.++|+.-...-|+.+..++-+...+..-+ .-+.|+.+|+..
T Consensus 418 ~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~in-de~naraLFetsv~r~ 496 (660)
T COG5107 418 KLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRIN-DEENARALFETSVERL 496 (660)
T ss_pred HHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhC-cHHHHHHHHHHhHHHH
Confidence 9999999888 5678888999998776665599999999888888887765532222222224 457788898854
Q ss_pred ccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 542 SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 542 ~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
...--.++|+.+++.-.+.|+...+..+=+++.+..
T Consensus 497 ~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 497 EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 222235699999999999999988877777665443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0016 Score=51.50 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=7.9
Q ss_pred HHHHHHcCCHhHHHHHHH
Q 005474 453 IQCYGKAQRTDDVVRALN 470 (695)
Q Consensus 453 i~~~~~~g~~~~A~~~~~ 470 (695)
..+|.+.|++++|+++|+
T Consensus 65 a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHh
Confidence 344444444444444444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.015 Score=53.02 Aligned_cols=62 Identities=13% Similarity=0.039 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 005474 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQL--SVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403 (695)
Q Consensus 342 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 403 (695)
.+..+...+...|++++|...|++.......+ ...++..+...|...|++++|+..++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444555555555555555554432211 123444555555555555555555555554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.039 Score=59.63 Aligned_cols=68 Identities=12% Similarity=-0.095 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh
Q 005474 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG 514 (695)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~ 514 (695)
+...|.++.-.+...|++++|...++++.+. .|+...|..+...+...|+ ++|...++++..++|.++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 3344555544444456666666666665544 2455555555555555555 666666666555555544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.029 Score=51.30 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=68.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHH
Q 005474 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD--NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241 (695)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 241 (695)
....|..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|+..+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 455677788888889999999999998876532222 3566777778888899999999888887742 2245666677
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 005474 242 IDAYGRAGNVEMAFGLYDR 260 (695)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~ 260 (695)
...+...|+...+..-++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred HHHHHHcCChHhHhhCHHH
Confidence 7777777776555444333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.051 Score=47.64 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005474 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456 (695)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 456 (695)
....+..-+...|++++|..+|+.+..-. +-+..-|-.|.-.+-..|++++|...|.......+ .|...+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 33445555667788888888888777654 45666667777777778888888888887777542 3667777777788
Q ss_pred HHcCCHhHHHHHHHHhh
Q 005474 457 GKAQRTDDVVRALNRLP 473 (695)
Q Consensus 457 ~~~g~~~~A~~~~~~m~ 473 (695)
...|+.+.|.+.|+..+
T Consensus 114 L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 114 LACDNVCYAIKALKAVV 130 (157)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 88888888888877765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.26 Score=43.99 Aligned_cols=124 Identities=12% Similarity=0.054 Sum_probs=58.8
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCC---CCCCHHHH
Q 005474 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG---CDPDALTY 238 (695)
Q Consensus 162 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~ 238 (695)
.|++.---.+..++...|+..+|...|++...--+--|....-.+.++....+++..|...++++-+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 344444445555556666666666666555432223344444445555555555555555555554421 1222 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 005474 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289 (695)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 289 (695)
-.+.+.+...|....|+..|+..... -|+...-......+.+.|+.+++
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHH
Confidence 23444555555555555555555543 23333333333334444444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0015 Score=51.54 Aligned_cols=52 Identities=27% Similarity=0.199 Sum_probs=23.0
Q ss_pred HhhhhcchhhHHHHHHHHHHhcccCccc-cchHHHHHHHHhcCCHHHHHHHHHH
Q 005474 520 LLEEQDIEGDFKKEATELFNSISKDVKK-AYCNCLIDLCVNLNLLENACKLLEL 572 (695)
Q Consensus 520 l~~~~~~~g~~~~eA~~l~~~~~~~~~~-~~~~~L~~~~~~~g~~~~A~~~l~~ 572 (695)
++.++...| ..++|.+++++....+.. ...-.++.+|.+.|++++|+++|++
T Consensus 31 la~~~~~~~-~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 31 LAQCYFQQG-KYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 344444444 445555554442222211 1222334556666666666666654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.034 Score=58.46 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 005474 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330 (695)
Q Consensus 288 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 330 (695)
+.+.-+++|++.|-.|+... +...++-.|++.+|-++|.+
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 44455677788887777653 34456667888888887754
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.015 Score=53.00 Aligned_cols=27 Identities=15% Similarity=0.018 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005474 237 TYSSMIDAYGRAGNVEMAFGLYDRARN 263 (695)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 263 (695)
++..+...+...|++++|++.+++...
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444455555555555555555443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.11 Score=56.37 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHH
Q 005474 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 485 (695)
Q Consensus 408 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 485 (695)
..+...|.++.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|...+++.... .|...+|.
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~ 490 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLY 490 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHH
Confidence 4456777777666777899999999999999854 78888999999999999999999999988744 55544543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.065 Score=56.51 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=49.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHH---------HHHHHHcCCCCCHHHHHHHHHHHHHcCCh--hHHHHHHHhchhCCCC
Q 005474 164 EVILYNVTMKVFRKCRDLDKAERL---------FDDMLDRGVKPDNVTFSTLISCARMNNLP--NKAVEWFERMPSFGCD 232 (695)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~l---------~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~ 232 (695)
..+.+.+-+-.|...|.+++|.++ ++.+... ..+.-.+++.-.+|.+..+. -+.+.-+++|+++|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 333455555566677777777543 1111111 11233344444566555443 2344445677777777
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005474 233 PDALTYSSMIDAYGRAGNVEMAFGLYDR 260 (695)
Q Consensus 233 p~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (695)
|+... +...++-.|.+.+|-++|.+
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 77653 33445566777887777765
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.57 Score=46.88 Aligned_cols=142 Identities=20% Similarity=0.169 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHHcCChhHHH
Q 005474 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFR--KCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAV 220 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~ 220 (695)
+..+...|..-.+.. -|.+|-.++. ..|+-..|.++-.+-.+. +.-|..-.-.|+. +-.-.|+++.|.
T Consensus 69 P~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 69 PYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred cHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 555666665544332 2555555543 346777776665543321 2234444444444 334467777777
Q ss_pred HHHHhchhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 221 EWFERMPSFGCDPDALT--YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 221 ~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
+-|+.|... |.... ...|.-..-+.|+.+.|...-++.-..- +.-...+.+.+...+..|+|+.|+++++.-++
T Consensus 141 ~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 141 KKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 777777651 22111 1222222345567777666666655432 23345666777777777777777777766543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.033 Score=48.81 Aligned_cols=92 Identities=8% Similarity=-0.040 Sum_probs=64.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHc
Q 005474 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424 (695)
Q Consensus 345 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 424 (695)
.+..-+...|++++|..+|+.+...... +..-|..|.-+|-..|++++|+..|....... +.|...+-.+..++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHc
Confidence 3444556677777777777777665443 44555557777777788888888887777665 46667777777777778
Q ss_pred CCHHHHHHHHHHHHH
Q 005474 425 GKVSEAEAMFNEMLE 439 (695)
Q Consensus 425 g~~~~A~~~~~~m~~ 439 (695)
|+.+.|.+-|+..+.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888877776665
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.38 Score=42.94 Aligned_cols=141 Identities=12% Similarity=0.087 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHH
Q 005474 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PNLFVL 449 (695)
Q Consensus 371 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~ 449 (695)
..|++..-..|..++...|+..+|...|++... |++--|......+.++....++..+|...++.+.+.... -+..+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 345666666677777788888888888877765 445677777777777777788888888888777764310 022334
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhcCCH--HHHHHHHHHHHHcCCC
Q 005474 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPK--EELGKLVECVEKSNSK 512 (695)
Q Consensus 450 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~~~~~~--~~a~~~~~~~~~~~p~ 512 (695)
..+...|...|++.+|...|+.....-..|... .|..++..-.+... .+...+++.+.+..|.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H 229 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPH 229 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchh
Confidence 456677777888888888888877653333333 33444332222222 4445566666655553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.069 Score=50.16 Aligned_cols=132 Identities=10% Similarity=-0.001 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHH-----HH
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS-----SM 241 (695)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-----~l 241 (695)
+-+.++..+...|.+.-...++++.+++..+.++.....|.+.-.+.|+.+.|...|++..+..-..|..+.+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3456666666777777777777777776555566666777777777777777777777665432222222222 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005474 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 299 (695)
...|.-.+++..|...|++....+ +.|++.-|.-.-+..-.|+..+|++.++.|++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334445566667777776666554 345555554444444456777777777777665
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.2 Score=50.34 Aligned_cols=83 Identities=11% Similarity=-0.073 Sum_probs=39.2
Q ss_pred HHcCCHhHHHHHHHHhhhC---CCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHH
Q 005474 457 GKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK 532 (695)
Q Consensus 457 ~~~g~~~~A~~~~~~m~~~---g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (695)
.+.|++..|.+.+.+.+.. .+.|+...|.-...+..+.|+ .+|...-+.+.+++|.+...+-.-+.++...+ .|+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le-~~e 338 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE-KWE 338 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH-HHH
Confidence 3455555555555555411 122222333333334444555 55555555555555554444443444444434 455
Q ss_pred HHHHHHHh
Q 005474 533 EATELFNS 540 (695)
Q Consensus 533 eA~~l~~~ 540 (695)
+|.+-+++
T Consensus 339 ~AV~d~~~ 346 (486)
T KOG0550|consen 339 EAVEDYEK 346 (486)
T ss_pred HHHHHHHH
Confidence 55555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.28 Score=46.23 Aligned_cols=173 Identities=14% Similarity=0.164 Sum_probs=76.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 005474 241 MIDAYGRAGNVEMAFGLYDRARNEK--WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318 (695)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 318 (695)
....+...|++++|.+.|+++.... -+.-....-.++.++.+.|++++|...|+++.+.-..-....+...+.+.+.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3444556677777777777766542 11223344556667777777777777777766542211112222222222111
Q ss_pred CChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005474 319 KRPWQVKTIYKEMTDNGLSPN-------WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391 (695)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 391 (695)
....... . ...| ...+..++.-|=......+|...+..+.+. =...--.+.+-|.+.|.+
T Consensus 91 ~~~~~~~-------~--~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 91 KQIPGIL-------R--SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-H
T ss_pred HhCccch-------h--cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccH
Confidence 1110000 0 0000 112333444444455555555555444332 111112245556666666
Q ss_pred HHHHHHHHHhHhCCCCCCCH----HHHHHHHHHHHHcCCHHH
Q 005474 392 DEAFEIFEDMKSSENCQPDS----WTFSSMITICSCRGKVSE 429 (695)
Q Consensus 392 ~~A~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~ 429 (695)
..|..-++.+.+.- |++ .....++.+|.+.|..+.
T Consensus 158 ~aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 158 KAAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCChHH
Confidence 66666666666542 222 223445555555555553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.12 Score=43.65 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=22.8
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 005474 350 YGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKS 403 (695)
Q Consensus 350 ~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 403 (695)
+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444443322 11222333444444445554444444443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=1.3 Score=47.61 Aligned_cols=192 Identities=11% Similarity=0.053 Sum_probs=97.1
Q ss_pred HHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCh
Q 005474 139 LNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV--KPDNVTFSTLISCARMNNLP 216 (695)
Q Consensus 139 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~ 216 (695)
...++++++|.+++-.+.++ ...|..+.+.|++-...++++.-- .+. ..-...|+.+-..+.....+
T Consensus 744 ~~~~g~feeaek~yld~drr----------DLAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~W 812 (1189)
T KOG2041|consen 744 SAFYGEFEEAEKLYLDADRR----------DLAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEW 812 (1189)
T ss_pred hhhhcchhHhhhhhhccchh----------hhhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777665443 235666677777776666654311 000 00123556666666666666
Q ss_pred hHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005474 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296 (695)
Q Consensus 217 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 296 (695)
++|.+.|..-.. ....+.++.+..++++-+.+...+. -|....-.|..++.+.|.-++|.+.|-+.
T Consensus 813 e~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 813 EEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 666666654321 1234455555555555444444433 23344455556666666666666555433
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--------------HHHHHHHHHhCCChHHHHHH
Q 005474 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT--------------YASLLRAYGRARYGEDTLSV 362 (695)
Q Consensus 297 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--------------~~~li~~~~~~g~~~~A~~~ 362 (695)
.. |. ..+..|...++|.+|.++-+...- |...| ..--|..+.+.|+.-+|-++
T Consensus 879 s~----pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarl 945 (1189)
T KOG2041|consen 879 SL----PK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARL 945 (1189)
T ss_pred cC----cH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHH
Confidence 21 11 123444444555555444332211 11111 01235567777777777777
Q ss_pred HHHHHH
Q 005474 363 YREMKE 368 (695)
Q Consensus 363 ~~~m~~ 368 (695)
+.+|.+
T Consensus 946 l~qmae 951 (1189)
T KOG2041|consen 946 LSQMAE 951 (1189)
T ss_pred HHHHhH
Confidence 777754
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.14 Score=43.13 Aligned_cols=88 Identities=23% Similarity=0.132 Sum_probs=43.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHH
Q 005474 243 DAYGRAGNVEMAFGLYDRARNEKWRID--PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMG 316 (695)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~ 316 (695)
.++-..|+.++|+.+|++....|.... ...+-.+...|...|++++|+.+|++..... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 344455666666666666665553332 2234445555566666666666666555431 22 111122223445
Q ss_pred hcCChHHHHHHHHHHH
Q 005474 317 RAKRPWQVKTIYKEMT 332 (695)
Q Consensus 317 ~~g~~~~a~~~~~~m~ 332 (695)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666655554433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0079 Score=45.11 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=21.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 248 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
.|++++|+++|+++.... +-+..++..+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444332 22344444444444444444444444444443
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.074 Score=51.50 Aligned_cols=94 Identities=15% Similarity=0.033 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHhcC--CH--HHHHHHHHHHHHcCCChhHHHHH
Q 005474 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPEL-GITPDDRFCGCLLNVMTQT--PK--EELGKLVECVEKSNSKLGYVVKL 519 (695)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~ll~~~~~~--~~--~~a~~~~~~~~~~~p~~~~~~~~ 519 (695)
|...|..|...|...|+++.|...|.+..+. |-+ ...+..+..++... +. .++..+|+++.+.+|.+.....+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 8899999999999999999999999998753 333 33444444443332 22 88888999999999999888888
Q ss_pred HhhhhcchhhHHHHHHHHHHhc
Q 005474 520 LLEEQDIEGDFKKEATELFNSI 541 (695)
Q Consensus 520 l~~~~~~~g~~~~eA~~l~~~~ 541 (695)
|+..+.+.| .+.+|...++.|
T Consensus 233 LA~~afe~g-~~~~A~~~Wq~l 253 (287)
T COG4235 233 LAFAAFEQG-DYAEAAAAWQML 253 (287)
T ss_pred HHHHHHHcc-cHHHHHHHHHHH
Confidence 887776666 667777766665
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.015 Score=43.18 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=32.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005474 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 299 (695)
...+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|..+|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555566666666666666554 334555555566666666666666666665543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.011 Score=44.30 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=22.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
.|++++|.++|+++.+... -+...+..+..+|.+.|++++|..+++++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555444221 144444444555555555555555555544
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.054 Score=54.09 Aligned_cols=60 Identities=12% Similarity=0.035 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 413 TFSSMITICSCRGKVSEAEAMFNEML----EAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
.|..|-..|.-.|+++.|+...+.-. +.|-+. ....+..+.+++.-.|+++.|.+.|+.-
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 34555555666777887776554332 222211 3346677777888888888888887754
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.3 Score=44.77 Aligned_cols=275 Identities=11% Similarity=0.033 Sum_probs=148.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhc
Q 005474 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP-DALTYSSMIDAYGRA 248 (695)
Q Consensus 170 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 248 (695)
..-..+.+..++..|+..+...++.+. -+..-|..-...+...|++++|.--.+.-.+. .+ ......-.-+++...
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLAL 130 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhh
Confidence 345567777888888888888887642 24455555666677777777776555444432 22 122333344444445
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHhHHHH-HHHHHhcCChHHHHH
Q 005474 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNMITYNNL-LDTMGRAKRPWQVKT 326 (695)
Q Consensus 249 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l-i~~~~~~g~~~~a~~ 326 (695)
++..+|.+.++.-. .| ....++..++....... +|...+|..+ ...+.-.|++++|..
T Consensus 131 ~~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 55555555544111 11 11122222222222111 1333344333 234555677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH--HHhCCChHHHHHHHHHHHHcCCCCCHHH---HHHH----------HHHHHhcCCH
Q 005474 327 IYKEMTDNGLSPNWNTYASLLRA--YGRARYGEDTLSVYREMKEKGMQLSVTL---YNTL----------LAMCADVGYT 391 (695)
Q Consensus 327 ~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~l----------i~~~~~~g~~ 391 (695)
+--...+..- ...+...+++ +--.++.+.|...|++-+..+. +... ...+ ..-..+.|++
T Consensus 191 ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 191 EAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred HHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 6666555321 1122222222 2234566677777766655432 2111 1111 2234577888
Q ss_pred HHHHHHHHHhHhCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHhHHH
Q 005474 392 DEAFEIFEDMKSSEN--CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV---LTSLIQCYGKAQRTDDVV 466 (695)
Q Consensus 392 ~~A~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~ 466 (695)
..|.+.|.+...... ..++...|........+.|+.++|+.--++..+ .|..- |..-..++...++|++|+
T Consensus 266 ~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 266 RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889888888765421 245555566666667788888888887777766 23322 222234556678888888
Q ss_pred HHHHHhhhCC
Q 005474 467 RALNRLPELG 476 (695)
Q Consensus 467 ~~~~~m~~~g 476 (695)
+-|++..+..
T Consensus 342 ~d~~~a~q~~ 351 (486)
T KOG0550|consen 342 EDYEKAMQLE 351 (486)
T ss_pred HHHHHHHhhc
Confidence 8888876543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.019 Score=42.59 Aligned_cols=52 Identities=21% Similarity=0.134 Sum_probs=20.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|+.+|++++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444422 1133334444444444444444444444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.30 E-value=1.5 Score=44.36 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=36.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005474 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461 (695)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 461 (695)
|.-|...|+...|.++-.+.. .|+...|-..+.+++..+++++-.++... +..+.-|...+.+|.+.|+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 344444455444444433332 34555555555555555555544443221 1122444445555555555
Q ss_pred HhHHHHHHHH
Q 005474 462 TDDVVRALNR 471 (695)
Q Consensus 462 ~~~A~~~~~~ 471 (695)
..+|..+..+
T Consensus 253 ~~eA~~yI~k 262 (319)
T PF04840_consen 253 KKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHh
Confidence 5555544444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.21 Score=48.40 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCC-CHHHH
Q 005474 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR---GKVSEAEAMFNEMLEAGFEP-NLFVL 449 (695)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p-~~~~~ 449 (695)
|...|..|..+|...|+++.|..-|....+.. .++...+..+..++... ....++.++|+++... .| |+.+.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence 77888888888888888888888888887765 46666666666655432 2345788888888874 34 66666
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 005474 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488 (695)
Q Consensus 450 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll 488 (695)
..|...+...|++.+|...|+.|.+. .|.......++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHH
Confidence 77777888888888888888888865 34333344443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.044 Score=54.65 Aligned_cols=131 Identities=13% Similarity=-0.018 Sum_probs=69.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh----HhCCCCCCCHHH
Q 005474 343 YASLLRAYGRARYGEDTLSVYREMK----EKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDM----KSSENCQPDSWT 413 (695)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~p~~~~ 413 (695)
|..|.+.|.-.|+++.|+...+.-. +.|-+. -...+..|..+++-.|+++.|.+.|+.. .+.|.-......
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444445555567777766554322 222111 1234555666666777777777776543 222211223344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 414 FSSMITICSCRGKVSEAEAMFNEMLE----A-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
.-+|...|.-..++++|+.++.+-.. . ...-....|.+|..+|...|..++|+.+.+.-.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566666666666666666654332 0 011134566777777777777777776665443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.5 Score=44.45 Aligned_cols=59 Identities=7% Similarity=-0.014 Sum_probs=37.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005474 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKP--NMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334 (695)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 334 (695)
....+...|++++|.+.|+++...-... -....-.++.++.+.|+++.|...+++..+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445667788888888888887653211 1234455667777888888888888877664
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.1 Score=42.43 Aligned_cols=143 Identities=14% Similarity=0.153 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHH-
Q 005474 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT- 419 (695)
Q Consensus 341 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~- 419 (695)
.+.+.++..+.-.|.+.-....+++++++..+.+......|.+.-.+.|+.+.|...|++..+... +.|..+++.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHh
Confidence 345567777777788888888888888887777888888899988999999999999998876554 555555554443
Q ss_pred ----HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHH
Q 005474 420 ----ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487 (695)
Q Consensus 420 ----~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 487 (695)
.|.-..++.+|...+.+.....- .|+...|.-.-+..-.|+..+|++.++.|.+. .|...+-+++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 34556778888888887776431 24555555444555568889999999998854 5555544433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.025 Score=42.50 Aligned_cols=61 Identities=16% Similarity=0.294 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHH
Q 005474 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NFDGCLNVYEEMK 297 (695)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 297 (695)
.+|..+...+...|++++|+..|++.++.. +-+..+|..+..+|.+.| ++++|++.|++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444555555555555555544432 223344444444444544 3455555444443
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.12 E-value=1.8 Score=43.70 Aligned_cols=111 Identities=10% Similarity=0.087 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHH
Q 005474 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421 (695)
Q Consensus 342 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 421 (695)
+.+..|.-+...|+...|.++-.+. + .||...|...+.+++..+++++-..+-.. +-.+.-|..++..|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHH
Confidence 4455566677888888887765544 2 36888999999999999999988776432 22346788999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
.+.|+..+|..+..++ .+..-+..|.++|++.+|.+.--+..
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 9999999999988772 12456788999999999988765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.035 Score=41.64 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC-CHhHHHHHHHHhh
Q 005474 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQ-RTDDVVRALNRLP 473 (695)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 473 (695)
+|..+...+...|++++|+..|++.++.. | +...|..+..+|.+.| ++++|++.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444421 2 3334444444444444 3444444444443
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.056 Score=47.86 Aligned_cols=69 Identities=28% Similarity=0.429 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-----HcCCCCCHHh
Q 005474 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK-----AIGVKPNMIT 307 (695)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~ 307 (695)
...++..+...|++++|.++.+++.... +.|...|..+|.+|...|+..+|+++|+++. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4445556666677777777777766654 5566677777777777777777777776653 2355555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.074 Score=50.46 Aligned_cols=105 Identities=11% Similarity=0.153 Sum_probs=67.8
Q ss_pred CCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHH
Q 005474 162 SKEVILYNVTMKVFRK-----CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236 (695)
Q Consensus 162 ~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 236 (695)
..|-.+|-.++..+.. .+.++-....++.|.+.|++.|..+|+.||+.+-+.. +.|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-
Confidence 4566666666666533 3455666667788999999999999998887653321 22221
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 005474 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285 (695)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 285 (695)
.+....-.|- .+-+-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1222222222 2234567888888888888888888888888877665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.13 Score=50.19 Aligned_cols=87 Identities=11% Similarity=0.049 Sum_probs=41.9
Q ss_pred HHcCChhHHHHHHHhchhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcC
Q 005474 211 RMNNLPNKAVEWFERMPSFGCDPD----ALTYSSMIDAYGRAGNVEMAFGLYDRARNEK--WRIDPNAFSTLIKLYGTAG 284 (695)
Q Consensus 211 ~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g 284 (695)
.+.|++++|+..|+.+.+. .|+ ...+..+...|...|++++|...|+.+.+.- -+.....+-.+...|...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3344555555555544442 122 1334445555555556666655555555431 0112233333444555566
Q ss_pred ChHHHHHHHHHHHHc
Q 005474 285 NFDGCLNVYEEMKAI 299 (695)
Q Consensus 285 ~~~~A~~~~~~m~~~ 299 (695)
+.++|..+|+++.+.
T Consensus 232 ~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 DTAKAKAVYQQVIKK 246 (263)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666665554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.16 Score=49.61 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHhhhC-CCCC-CHHHHHHH
Q 005474 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPN----LFVLTSLIQCYGKAQRTDDVVRALNRLPEL-GITP-DDRFCGCL 487 (695)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-d~~~~~~l 487 (695)
|...+..+.+.|++++|...|+.+++.. |+ ...+..+...|...|++++|+..|+.+.+. .-.| ....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4444433344555556655555555532 22 134445555556666666666666665532 1111 11122223
Q ss_pred HHHHhcCCH-HHHHHHHHHHHHcCCCh
Q 005474 488 LNVMTQTPK-EELGKLVECVEKSNSKL 513 (695)
Q Consensus 488 l~~~~~~~~-~~a~~~~~~~~~~~p~~ 513 (695)
...+...|+ ++|.+.++.+.+..|+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 333444444 66666666666555553
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.21 Score=42.62 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh-hCCCCCCHHHHHHHHH
Q 005474 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP-ELGITPDDRFCGCLLN 489 (695)
Q Consensus 442 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~pd~~~~~~ll~ 489 (695)
..|+..+..+++.+|+..|++..|+++.+... ..++.-+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44555555555555555555555555555544 3344445555555555
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.89 Score=38.22 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 005474 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442 (695)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 442 (695)
....+..+.+.|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3445566666777777777777766533 56666677777777777777777777777776664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.65 E-value=2.7 Score=42.97 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=12.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 005474 241 MIDAYGRAGNVEMAFGLYDRARN 263 (695)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~~~~ 263 (695)
++-.|-...+++...++++.+..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~ 169 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEA 169 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhc
Confidence 33345555555666666555554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.56 E-value=3.3 Score=42.39 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=45.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH---cCChhHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 005474 171 TMKVFRKCRDLDKAERLFDDMLDRG---VKPDNVTFSTLISCARM---NNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244 (695)
Q Consensus 171 li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 244 (695)
++-.|....+++..+++.+.|...- +.-+...-....-++.+ .|+.++|++++..+....-.++..+|..+.+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3445778888888888888887541 00011111112224445 77788888888775554456677777776666
Q ss_pred HH
Q 005474 245 YG 246 (695)
Q Consensus 245 ~~ 246 (695)
|-
T Consensus 227 yK 228 (374)
T PF13281_consen 227 YK 228 (374)
T ss_pred HH
Confidence 54
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.2 Score=42.73 Aligned_cols=84 Identities=10% Similarity=0.032 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhC--------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005474 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS--------------ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (695)
|..++..+|.++++.|+++....+++..=.- ....|+..+..+++.+|+..|++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567888888899999988888888776211 11357888888899999889999999998888766
Q ss_pred -CCCCCCHHHHHHHHHHHH
Q 005474 440 -AGFEPNLFVLTSLIQCYG 457 (695)
Q Consensus 440 -~g~~p~~~~~~~li~~~~ 457 (695)
.+++-+..+|..|++-..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 566667888888887443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.095 Score=39.75 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=27.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005474 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 299 (695)
.|.+.+++++|.++++++...+ +.+...|.....+|.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555443 334444444555555555555555555555543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.1 Score=46.21 Aligned_cols=58 Identities=14% Similarity=0.256 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005474 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438 (695)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 438 (695)
..++..+...|++++|.++...+.... +-|...|..+|.+|...|+..+|.++|+++.
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 335555556666666666666666544 4556666666666666666666666665554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.019 Score=44.36 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=37.3
Q ss_pred HHHHHhhhhcchhhHHHHHHHHHHhc-------cc-Ccc-ccchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005474 516 VVKLLLEEQDIEGDFKKEATELFNSI-------SK-DVK-KAYCNCLIDLCVNLNLLENACKLLELGLT 575 (695)
Q Consensus 516 ~~~~l~~~~~~~g~~~~eA~~l~~~~-------~~-~~~-~~~~~~L~~~~~~~g~~~~A~~~l~~~~~ 575 (695)
+++.+|..+...| .+++|.+.+++. +. .+. ..+++.++.++...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELG-RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555544444 455555554433 10 111 23678899999999999999999999875
|
... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.21 Score=47.53 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------CCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 005474 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA----------------QRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491 (695)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~ 491 (695)
+-....++.|.+.|+..|..+|+.|++.+-+. .+-+-+++++++|...|+.||..+-..+++++
T Consensus 89 eFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~F 168 (406)
T KOG3941|consen 89 EFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAF 168 (406)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHh
Confidence 33333444455555555555555555444322 12345889999999999999999999999998
Q ss_pred hcCCH--HHHHHHHHHH
Q 005474 492 TQTPK--EELGKLVECV 506 (695)
Q Consensus 492 ~~~~~--~~a~~~~~~~ 506 (695)
.+.+- ....+++--|
T Consensus 169 Gr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 169 GRWNFPTKKVKRMLYWM 185 (406)
T ss_pred ccccccHHHHHHHHHhh
Confidence 88776 5555544444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.15 Score=38.57 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=24.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
.|.+.+++++|.++++++...+. .+...|.....++.+.|++++|...|++..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444555555555555544321 133444444445555555555555555544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.92 E-value=4.4 Score=40.23 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=60.1
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHHcCChhHHHHHHHhchhC--------CCCCC-----
Q 005474 176 RKCRDLDKAERLFDDMLDRG--VKPDN------VTFSTLISCARMNNLPNKAVEWFERMPSF--------GCDPD----- 234 (695)
Q Consensus 176 ~~~g~~~~A~~l~~~m~~~g--~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~----- 234 (695)
.+.|+++.|..++.+....- ..|+. ..||.-...+.+..+++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888887766432 22222 12333333333332666666665543321 11222
Q ss_pred HHHHHHHHHHHHhcCCH---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005474 235 ALTYSSMIDAYGRAGNV---EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 235 ~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 299 (695)
..++..++.+|...+.. ++|..+++.+.... +-.+.++-.-+..+.+.++.+++.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23444555555555543 33444444443332 222444444455555566666666666666554
|
It is also involved in sporulation []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.29 Score=50.64 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCcccc-chHHHHHHHHhcCCHHHHHHHHHHHH
Q 005474 497 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKA-YCNCLIDLCVNLNLLENACKLLELGL 574 (695)
Q Consensus 497 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~-~~~~L~~~~~~~g~~~~A~~~l~~~~ 574 (695)
.++.++.+.+.+++|+++.+...+|....-.+ ..+.|..+|++. ...|+.+ +|-..++.++-.|+.++|.+.+++++
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~-~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSG-QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc-chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45555666666677777766666666554445 366666666655 3445433 56666667777777777777777766
Q ss_pred HcC
Q 005474 575 TLE 577 (695)
Q Consensus 575 ~~~ 577 (695)
+..
T Consensus 400 rLs 402 (458)
T PRK11906 400 QLE 402 (458)
T ss_pred ccC
Confidence 554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.099 Score=40.33 Aligned_cols=61 Identities=16% Similarity=0.350 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 413 TFSSMITICSCRGKVSEAEAMFNEMLEA----GF-EPN-LFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
+|+.+...|...|++++|++.|++..+. |- .|+ ..++..+..+|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555554431 11 011 3445555666666666666666666543
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.83 E-value=10 Score=43.99 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHhh
Q 005474 237 TYSSMIDAYGRAG--NVEMAFGLYDRARN 263 (695)
Q Consensus 237 ~~~~li~~~~~~g--~~~~A~~~~~~~~~ 263 (695)
-.-.+|..|.+.+ .+++|++...++..
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3345566666665 55666665555553
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.77 E-value=1.7 Score=46.67 Aligned_cols=95 Identities=24% Similarity=0.261 Sum_probs=50.7
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCChhHHHHHHHhchhCC---CCCCHHHHH
Q 005474 168 YNVTMKVFRK----CRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFG---CDPDALTYS 239 (695)
Q Consensus 168 ~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~ 239 (695)
|+.++..+.. ....+.|.++++.+.++ -|+...|...-. .+...|++++|++.|++..... .+.....+-
T Consensus 232 y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~ 309 (468)
T PF10300_consen 232 YHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYF 309 (468)
T ss_pred HHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHH
Confidence 4444444433 34667777777777765 456655554443 5566777777777777544210 011122233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC
Q 005474 240 SMIDAYGRAGNVEMAFGLYDRARNE 264 (695)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~~~~~ 264 (695)
-+.-.+.-.+++++|...|.++.+.
T Consensus 310 El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 310 ELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHhc
Confidence 3344444555666666666655543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.75 E-value=8.1 Score=42.45 Aligned_cols=345 Identities=12% Similarity=0.054 Sum_probs=169.3
Q ss_pred cCCCCCHHHHH-----HHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCC
Q 005474 194 RGVKPDNVTFS-----TLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN---VEMAFGLYDRARNEK 265 (695)
Q Consensus 194 ~g~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g 265 (695)
-|++.+..-|. .+|+-+...+.+..|+++-..+...-..- ..+|.....-+.+..+ -+.+..+-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 36666665554 35566677788888888776664321111 4566666666666532 22233333333321
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC----CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 005474 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK----PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341 (695)
Q Consensus 266 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 341 (695)
-.+...|..+.+.-...|+.+-|..+++.=...+.. .+..-+..-+.-+...|+.+....++-.|... .+..
T Consensus 504 -~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s 579 (829)
T KOG2280|consen 504 -LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRS 579 (829)
T ss_pred -CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHH
Confidence 144566777777777788888888877643222110 01223334445556666666666666655542 1111
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-HhCCCCCCCHHHHHHHHHH
Q 005474 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITI 420 (695)
Q Consensus 342 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~p~~~~~~~li~~ 420 (695)
.|...+ .+...|..+|.+..+.. |..+ +-+.|-...+...+-.+.-+- .....+.+-..........
T Consensus 580 ~l~~~l------~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 580 SLFMTL------RNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HHHHHH------HhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 121111 22344555555544321 1111 111222222222221111111 0000001111112222333
Q ss_pred HHHcCCHH----------HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 005474 421 CSCRGKVS----------EAEAMFNEMLE-AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489 (695)
Q Consensus 421 ~~~~g~~~----------~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~ 489 (695)
|.+..... .-.++.+.+.. .|..-.-.+.+--+.-+...|+..+|.++-.+.. .||...|..-+.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~ 723 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLT 723 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHH
Confidence 33333211 11122222221 2222223344445556667788888888877764 678888877777
Q ss_pred HHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHH
Q 005474 490 VMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 568 (695)
Q Consensus 490 ~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ 568 (695)
++...++ ++.+++-+.... --.+..++.... +.| ..+||.+++.+.+..+ -...+|.+.|++.+|.+
T Consensus 724 aLa~~~kweeLekfAkskks-PIGy~PFVe~c~----~~~-n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKKS-PIGYLPFVEACL----KQG-NKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred HHHhhhhHHHHHHHHhccCC-CCCchhHHHHHH----hcc-cHHHHhhhhhccCChH------HHHHHHHHhccHHHHHH
Confidence 8877777 555555443321 111223343332 235 6788888887664332 46677888888888766
Q ss_pred HHHH
Q 005474 569 LLEL 572 (695)
Q Consensus 569 ~l~~ 572 (695)
+--+
T Consensus 792 ~A~~ 795 (829)
T KOG2280|consen 792 LAAE 795 (829)
T ss_pred HHHH
Confidence 5433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.7 Score=48.92 Aligned_cols=129 Identities=15% Similarity=0.152 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 005474 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282 (695)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 282 (695)
.+.++.-+.+.|..+.|+++-. |.. .-.....+.|+++.|.++.++. .+...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4455555555555555555421 211 1233344555555555433221 244455555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 005474 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 362 (695)
.|+++-|.+.|++..+ |..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 5555555555554432 33344445555555555555555544431 22233333344555555444
Q ss_pred HH
Q 005474 363 YR 364 (695)
Q Consensus 363 ~~ 364 (695)
+.
T Consensus 425 L~ 426 (443)
T PF04053_consen 425 LI 426 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.53 E-value=9.1 Score=42.07 Aligned_cols=128 Identities=11% Similarity=0.042 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh--hHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 005474 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP--NKAVEWFERMPSFGCDPDALTYSSMIDAYG 246 (695)
Q Consensus 169 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 246 (695)
..+|+-+...+.+..|+++-..+...-.. +...|..-..-+.+..+. +++++.+++=..... -....|..+..-..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 34566677778888888887666532111 134455555555554322 223333322222112 24456777777777
Q ss_pred hcCCHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 247 RAGNVEMAFGLYDRARNEKWR----IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 247 ~~g~~~~A~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
.+|+.+.|..+++.=...+-+ .+..-+..-+.-..+.|+.+-...++-.+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 889999998887653322211 1122334445556667777777776666654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.49 E-value=5.7 Score=39.49 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=68.0
Q ss_pred HHcCChhHHHHHHHhchhCC--CCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhC--------CCCCCH----
Q 005474 211 RMNNLPNKAVEWFERMPSFG--CDPDA------LTYSSMIDAYGRAGNVEMAFGLYDRARNE--------KWRIDP---- 270 (695)
Q Consensus 211 ~~~g~~~~A~~~~~~m~~~g--~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------g~~~~~---- 270 (695)
.+.|+.+.|..++.+....- ..|+. ..|+.-...+.+..+++.|...+++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788999999988876532 23332 22333333333333777777766654432 112222
Q ss_pred -HHHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005474 271 -NAFSTLIKLYGTAGNFD---GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334 (695)
Q Consensus 271 -~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 334 (695)
.++..++.+|...+..+ +|.++++.+...... ....+..-+..+.+.++.+++.+++.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 35566666776666543 455555555443211 2334444455666677777777777777764
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.43 E-value=2.7 Score=36.65 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc
Q 005474 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248 (695)
Q Consensus 169 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 248 (695)
..++..+.+.+.......+++.+...+. .+....+.++..|++.+ ..+.++.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455555555666666666666655542 45555666666665442 2333333331 01122223345555555
Q ss_pred CCHHHHHHHHHHH
Q 005474 249 GNVEMAFGLYDRA 261 (695)
Q Consensus 249 g~~~~A~~~~~~~ 261 (695)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=3.6 Score=42.89 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHH
Q 005474 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRAL 469 (695)
Q Consensus 391 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 469 (695)
..+|.++-+...+.+ ..|......+..+....|+++.|...|++... +.|| ..+|......+.-.|+.++|.+.+
T Consensus 320 ~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 320 AQKALELLDYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455666666666655 45666666666655666667777777776666 3343 334444444455566677777666
Q ss_pred HHhhhCCCCCCH---HHHHHHHHHHhcCCHHHHHHHHHH
Q 005474 470 NRLPELGITPDD---RFCGCLLNVMTQTPKEELGKLVEC 505 (695)
Q Consensus 470 ~~m~~~g~~pd~---~~~~~ll~~~~~~~~~~a~~~~~~ 505 (695)
++..+. .|.. ......++.|+..+.+++.+++.+
T Consensus 396 ~~alrL--sP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQL--EPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHhcc--CchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 664432 3322 223333345555555555555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=3.2 Score=36.84 Aligned_cols=85 Identities=12% Similarity=0.003 Sum_probs=37.5
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005474 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431 (695)
Q Consensus 352 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 431 (695)
..|++++|..+|.-+...+.. +..-+..|..+|-..+++++|+..|......+ .-|...+-....+|...|+.+.|.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHHHHH
Confidence 445555555555554443322 22333344444444455555555554443322 122222333344444455555555
Q ss_pred HHHHHHHH
Q 005474 432 AMFNEMLE 439 (695)
Q Consensus 432 ~~~~~m~~ 439 (695)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55544444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.32 E-value=5.2 Score=39.01 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=22.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005474 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297 (695)
Q Consensus 246 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 297 (695)
...|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555554444332 1223333444444455555555555544443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.72 Score=47.78 Aligned_cols=63 Identities=11% Similarity=0.001 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP----NAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
+...++.+..+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555566666666666666666655542 332 2355566666666666666666666555
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.28 E-value=4.8 Score=37.84 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005474 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333 (695)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 333 (695)
..+......+...+++..+...+...... ........+..+...+...+++..+.+.+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44444444455555555555555444431 1112233333344444444444455555444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=2.9 Score=37.12 Aligned_cols=91 Identities=11% Similarity=0.041 Sum_probs=70.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005474 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460 (695)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 460 (695)
...-+...|++++|..+|.-+.-.+ .-+..-+..|...+-..+++++|...|......+. -|...+-....+|...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 3444567899999999999887766 34566677888888888999999999988766443 34455556778888999
Q ss_pred CHhHHHHHHHHhhh
Q 005474 461 RTDDVVRALNRLPE 474 (695)
Q Consensus 461 ~~~~A~~~~~~m~~ 474 (695)
+.+.|...|+..++
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988776
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.27 E-value=1 Score=45.56 Aligned_cols=119 Identities=13% Similarity=-0.018 Sum_probs=78.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005474 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461 (695)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 461 (695)
...|.+.|++..|..-|++....=. |.+.-+.++...... .-..+++.+.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~--------------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLE--------------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhh--------------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhh
Confidence 4678888999999988888654210 111111122221111 123456677788889999
Q ss_pred HhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhh
Q 005474 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEE 523 (695)
Q Consensus 462 ~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~ 523 (695)
+.+|++.-++.++.+ .+|....-.=..+|...|. +.|...|+++.+++|++-.+.+-|..+
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999999988887653 2244444444557777777 999999999999999887776666554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.26 E-value=7.7 Score=40.70 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH--HHHHHHHHH
Q 005474 415 SSMITICSCRGKVSEAEAMFNEMLEAGF-EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR--FCGCLLNVM 491 (695)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--~~~~ll~~~ 491 (695)
..+..++.+.|+.++|.+.+++|.+... ..+......|+.++...+.+.++..++.+-.+.. -|... .|+..+-..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHHHH
Confidence 3455555667777777777777765321 1233455667777777777777777777754321 23322 344433221
Q ss_pred ------------hcCCH----HHHHHHHHHHHHcCCChhHH
Q 005474 492 ------------TQTPK----EELGKLVECVEKSNSKLGYV 516 (695)
Q Consensus 492 ------------~~~~~----~~a~~~~~~~~~~~p~~~~~ 516 (695)
.+.|. ..|.+.++++.+.||..+.+
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 22232 23456677778888876654
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.23 E-value=5 Score=37.85 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=47.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 005474 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244 (695)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 244 (695)
...|.....+|...+++++|...+.+..+. .+-|...|.+ ...++.|.-+.++|.+. .--+..|+--..+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 344666666777788888887766665431 1222222221 12234444455555442 1123345556667
Q ss_pred HHhcCCHHHHHHHHHHHh
Q 005474 245 YGRAGNVEMAFGLYDRAR 262 (695)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~ 262 (695)
|..+|..+.|-..+++.-
T Consensus 101 Y~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAA 118 (308)
T ss_pred HHHhCCcchHHHHHHHHH
Confidence 777777776666666544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.19 E-value=3.5 Score=35.92 Aligned_cols=84 Identities=15% Similarity=0.202 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 005474 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319 (695)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 319 (695)
.++..+...+........++.+...+ ..+...++.++..|++.+. .+.++.++. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444555555555555555544 2445555555555554422 222222221 112233333445555555
Q ss_pred ChHHHHHHHHHH
Q 005474 320 RPWQVKTIYKEM 331 (695)
Q Consensus 320 ~~~~a~~~~~~m 331 (695)
.++++..++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555544444443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.06 E-value=8.3 Score=39.73 Aligned_cols=90 Identities=11% Similarity=0.115 Sum_probs=58.5
Q ss_pred HHHHHhCCCCCHH-HHHHHHHhhC---ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005474 121 SVLRCLGDDFLEQ-DCVIILNNMT---NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196 (695)
Q Consensus 121 ~~l~~~~~~~~~~-~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 196 (695)
++-+...+.|+.- ....++..+. .++...+.++++..-.+ -=..+|...|+.=...+++...+.+|...+....
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp--~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP--IMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc--cccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 3334444544432 2233444443 47788888888865432 2345688888888888999999999999987744
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 005474 197 KPDNVTFSTLISCARMNN 214 (695)
Q Consensus 197 ~p~~~~~~~li~~~~~~g 214 (695)
+...|...+.--.+.+
T Consensus 108 --~ldLW~lYl~YIRr~n 123 (660)
T COG5107 108 --NLDLWMLYLEYIRRVN 123 (660)
T ss_pred --cHhHHHHHHHHHHhhC
Confidence 5777777776554433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.02 E-value=4.3 Score=36.34 Aligned_cols=132 Identities=9% Similarity=0.199 Sum_probs=65.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhh
Q 005474 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG--NVEMAFGLYDRARN 263 (695)
Q Consensus 186 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~ 263 (695)
+.++.+.+.|+.|+...+..+++.+.+.|++....+++ ..++-+|.......+-.+.... -.+-|++++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 34445555666666667777777777766654443333 3334444433333332222111 0223333333332
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005474 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333 (695)
Q Consensus 264 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 333 (695)
..+..++..+...|++-+|+++.+..... +......++.+..+.++...-..+|+-..+
T Consensus 90 -------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 -------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred -------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13455666666777777777766654221 222334455555555555554445444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.96 E-value=5.6 Score=37.38 Aligned_cols=168 Identities=15% Similarity=0.086 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 005474 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313 (695)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 313 (695)
...+......+...+++..+...+...... ........+..+...+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 455556666666667777666666665542 223444555666666666667777777777766543322 111111222
Q ss_pred -HHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005474 314 -TMGRAKRPWQVKTIYKEMTDNGL--SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390 (695)
Q Consensus 314 -~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 390 (695)
.+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45556666666666665543111 011222222222233444444444444444433211122333334444444444
Q ss_pred HHHHHHHHHHhHh
Q 005474 391 TDEAFEIFEDMKS 403 (695)
Q Consensus 391 ~~~A~~~~~~m~~ 403 (695)
++.|...+.....
T Consensus 218 ~~~a~~~~~~~~~ 230 (291)
T COG0457 218 YEEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.95 E-value=7.5 Score=38.83 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=11.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH
Q 005474 324 VKTIYKEMTDNGLSPNWNTYAS 345 (695)
Q Consensus 324 a~~~~~~m~~~~~~~~~~~~~~ 345 (695)
...+++.|.+.|+.-+..+|-+
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHhccCccChHHHH
Confidence 4445555555555555444443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=1.2 Score=46.22 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=55.3
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHhchhC
Q 005474 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDN----VTFSTLISCARMNNLPNKAVEWFERMPSF 229 (695)
Q Consensus 162 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 229 (695)
+.+...|+.+..+|.+.|++++|+..|+..++. .|+. .+|..+..+|...|+.++|++.|++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778999999999999999999999998876 4553 35888888999999999999999888774
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.78 E-value=1.7 Score=45.99 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=7.8
Q ss_pred HHHHHHHHHHcCChHHHHHH
Q 005474 273 FSTLIKLYGTAGNFDGCLNV 292 (695)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~ 292 (695)
.+.++.-+-+.|..+.|+++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~ 317 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQF 317 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhh
Confidence 33344444444444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.68 E-value=9.9 Score=39.33 Aligned_cols=396 Identities=14% Similarity=0.125 Sum_probs=192.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHH
Q 005474 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR--GVKP------------DNVTFSTLISCA 210 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p------------~~~~~~~li~~~ 210 (695)
.+.-...+..+++..+..+-...|..+. +-+.+.+++|++.+..-..+ +..+ |-..=+..+.++
T Consensus 61 ld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sL 138 (549)
T PF07079_consen 61 LDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSL 138 (549)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHH
Confidence 4444444455555543333333333332 45788999998888776544 2222 222235566788
Q ss_pred HHcCChhHHHHHHHhchh----CCCCCCHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHhhC------C
Q 005474 211 RMNNLPNKAVEWFERMPS----FGCDPDALTYSSMIDAYGRAGNV---------------EMAFGLYDRARNE------K 265 (695)
Q Consensus 211 ~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~~~~~~g~~---------------~~A~~~~~~~~~~------g 265 (695)
+..|++.++..++++|.. +.+.-+..+|+.++-++++.--. +.+.-...+|... .
T Consensus 139 Ie~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k 218 (549)
T PF07079_consen 139 IETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEK 218 (549)
T ss_pred HhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHh
Confidence 999999999999888764 34557889999877776654211 1222222222211 1
Q ss_pred CCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----C
Q 005474 266 WRIDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNM-ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS----P 338 (695)
Q Consensus 266 ~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~ 338 (695)
+.|.......++....-. .+..--.++++.....-+.|+- .....|+..+.+ +.+++..+-+.+....+. -
T Consensus 219 ~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~ 296 (549)
T PF07079_consen 219 FIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEE 296 (549)
T ss_pred hCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHH
Confidence 222223333333222211 1111122222222222234432 222333333333 444444444333322111 1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHH----hcCCHHHHHHHHHHhHhCCCCCC
Q 005474 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT-----LYNTLLAMCA----DVGYTDEAFEIFEDMKSSENCQP 409 (695)
Q Consensus 339 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~p 409 (695)
=..+|..++....+.++...|.+.+.-+.-........ +-..+.+..+ ..-+...-+.+++.....++ .
T Consensus 297 li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--D 374 (549)
T PF07079_consen 297 LIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--D 374 (549)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--c
Confidence 23467777777788888888888777665542221100 0011112222 11223444455555554432 2
Q ss_pred CHHHHHHHHHH---HHHcCC-HHHHHHHHHHHHHCCCCC-CHHHHHHHH----HHHHHc---CCHhHHHHHHHHhhhCCC
Q 005474 410 DSWTFSSMITI---CSCRGK-VSEAEAMFNEMLEAGFEP-NLFVLTSLI----QCYGKA---QRTDDVVRALNRLPELGI 477 (695)
Q Consensus 410 ~~~~~~~li~~---~~~~g~-~~~A~~~~~~m~~~g~~p-~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~ 477 (695)
.......|+.+ +.+.|. -++|.++++.+.+ +.+ |..+-|.+. .+|... ..+.+-+++-+-..+.|+
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 22222333332 445555 7788888888877 333 444333322 233222 222333333333346677
Q ss_pred CCCHH----HHHHHHHH--HhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccCccccch
Q 005474 478 TPDDR----FCGCLLNV--MTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYC 550 (695)
Q Consensus 478 ~pd~~----~~~~ll~~--~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~ 550 (695)
.|-.+ .-+.+-+| +...|+ .++.-+-.-+.++.| .+.++.++|-++.... .++||.+++..+|. +..++
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k-~Y~eA~~~l~~LP~--n~~~~ 528 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK-RYQEAWEYLQKLPP--NERMR 528 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh-hHHHHHHHHHhCCC--chhhH
Confidence 76332 33333332 122344 444444445566777 5667777777776655 77888888877754 33444
Q ss_pred HH
Q 005474 551 NC 552 (695)
Q Consensus 551 ~~ 552 (695)
|+
T Consensus 529 ds 530 (549)
T PF07079_consen 529 DS 530 (549)
T ss_pred HH
Confidence 43
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.1 Score=45.41 Aligned_cols=137 Identities=15% Similarity=0.099 Sum_probs=78.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005474 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391 (695)
Q Consensus 312 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 391 (695)
.+.|.+.|++..|...|+..... | -|.+.-+.++.... ..+ -...++.|.-+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l-~~~~~~~~ee~~~~-~~~-------k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------L-EYRRSFDEEEQKKA-EAL-------KLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------h-hccccCCHHHHHHH-HHH-------HHHHhhHHHHHHHhhhhH
Confidence 36778888888888877776541 0 00111111111111 111 223455577778888888
Q ss_pred HHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHhH-HHHHH
Q 005474 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF-VLTSLIQCYGKAQRTDD-VVRAL 469 (695)
Q Consensus 392 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~-A~~~~ 469 (695)
.+|++..+.....+ ++|....-.-..+|...|+++.|+..|+++++ +.|+-. .-+.++.+--+..+..+ ..++|
T Consensus 274 ~~Ai~~c~kvLe~~--~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 274 KEAIESCNKVLELD--PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887766 56766666666777777777888887777777 445333 33333333333333322 24555
Q ss_pred HHhh
Q 005474 470 NRLP 473 (695)
Q Consensus 470 ~~m~ 473 (695)
..|.
T Consensus 350 ~~mF 353 (397)
T KOG0543|consen 350 ANMF 353 (397)
T ss_pred HHHh
Confidence 5554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.63 E-value=6.9 Score=37.41 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 005474 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEK--WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313 (695)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 313 (695)
..|+.-+. -.+.|++++|.+.|+.+.... -+....+--.++-++.+.+++++|+..+++....-..-...-|...|.
T Consensus 36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 34444333 346678888888888777542 122344555566677778888888888887766533223334444444
Q ss_pred HHH
Q 005474 314 TMG 316 (695)
Q Consensus 314 ~~~ 316 (695)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.60 E-value=6.4 Score=38.40 Aligned_cols=145 Identities=16% Similarity=0.125 Sum_probs=92.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC
Q 005474 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250 (695)
Q Consensus 171 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 250 (695)
-.......|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3445677899999999998888763 223455666777899999999999999888754222222222334455555555
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcC
Q 005474 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAK 319 (695)
Q Consensus 251 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g 319 (695)
..+...+-.++-.. +-|...-..+...|...|+.++|++.+-.+... |.. |...-..|++.+.--|
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 55555555555442 336777777888888888888888777666543 222 4445555555555544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.45 E-value=4.9 Score=40.12 Aligned_cols=97 Identities=11% Similarity=-0.014 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHH
Q 005474 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP---DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-----FEPNLFV 448 (695)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~ 448 (695)
.|..+.+++.+.-++.+++.+-+.-.......+ ......++..++.-.+.++++++.|+...+.- ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344455555555555666555544332211111 11233445666667778888888888776521 1113457
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 449 LTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 449 ~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
|-.|...|.+..++++|.-+..+..
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 8888888999999998888776654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.43 E-value=4.1 Score=40.70 Aligned_cols=129 Identities=13% Similarity=0.310 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----ChhHHHHHHHhchhCC---CCCCHHHHHHHHHHHHhcCC-
Q 005474 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARM--NN----LPNKAVEWFERMPSFG---CDPDALTYSSMIDAYGRAGN- 250 (695)
Q Consensus 181 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~- 250 (695)
+++.+.+++.|.+.|+.-+..+|-+....... .. ...+|.++|+.|++.. ..++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788888888888777666554333322 11 2456777888887643 12345555555444 2233
Q ss_pred ---HHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCHHhHHHH
Q 005474 251 ---VEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGN--FDGCLNVYEEMKAIGVKPNMITYNNL 311 (695)
Q Consensus 251 ---~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l 311 (695)
.+.++..|+.+.+.|+..+-. ....++........ ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 345566666666655443322 22222222211111 33556666666666666555555444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.37 E-value=11 Score=38.87 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005474 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-C-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (695)
...+|..++..+.+.|+++.|...+..+...+. . ..+......-.......|+..+|...+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667777778888888888887777765331 0 11333444445556667777777777777766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.17 E-value=2.7 Score=35.36 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=50.0
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcC
Q 005474 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV---LTSLIQCYGKAQ 460 (695)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g 460 (695)
+++..|+++.|++.|.+....- +-+...||.-.+++.-+|+.++|++-+++..+..-..+... |..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3455666666666666665432 45566666666666666666666666666665211112222 222223455566
Q ss_pred CHhHHHHHHHHhhhCC
Q 005474 461 RTDDVVRALNRLPELG 476 (695)
Q Consensus 461 ~~~~A~~~~~~m~~~g 476 (695)
+-+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666554444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.05 E-value=15 Score=39.58 Aligned_cols=162 Identities=16% Similarity=0.132 Sum_probs=83.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC-CCCC-----HHhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHH
Q 005474 274 STLIKLYGTAGNFDGCLNVYEEMKAIG-VKPN-----MITYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPNWNTY 343 (695)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~ 343 (695)
..++....=.||-+.+++.+.+..+.+ +.-. .-.|..++..++. ....+.|.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 344444455566666666665544321 1111 1123333332222 34556677777777664 2555544
Q ss_pred HHH-HHHHHhCCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHH
Q 005474 344 ASL-LRAYGRARYGEDTLSVYREMKEKG---MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419 (695)
Q Consensus 344 ~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 419 (695)
... ...+...|++++|++.|+...... .+.....+--+.-.+.-.+++++|.+.|..+.+... ....+|.-+..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~--WSka~Y~Y~~a 347 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK--WSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc--cHHHHHHHHHH
Confidence 433 234455677777777777543211 111233344455666677777777777777777552 33444433332
Q ss_pred H-HHHcCCH-------HHHHHHHHHHHH
Q 005474 420 I-CSCRGKV-------SEAEAMFNEMLE 439 (695)
Q Consensus 420 ~-~~~~g~~-------~~A~~~~~~m~~ 439 (695)
+ +...|+. ++|.++|.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 2 3345555 677777776643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.83 E-value=2.7 Score=41.39 Aligned_cols=119 Identities=14% Similarity=0.014 Sum_probs=80.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCH----HHHHHHHHHHHhcCC
Q 005474 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA----LTYSSMIDAYGRAGN 250 (695)
Q Consensus 175 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~ 250 (695)
+...|++.+|-..++++++. .+.|...++..=.+|.-.|+...-...++++.-.- .+|. .+-..+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhcc
Confidence 34567777777778887765 45577777777778888888877777777766431 2333 222333444556788
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005474 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296 (695)
Q Consensus 251 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 296 (695)
+++|++.-++..+.+ +-|...-.++...+--.|++.++.+...+-
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 888888888877665 556677777777777788888887776553
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.64 E-value=9.9 Score=39.93 Aligned_cols=58 Identities=7% Similarity=0.163 Sum_probs=32.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 005474 346 LLRAYGRARYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403 (695)
Q Consensus 346 li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 403 (695)
+..+.-+.|+.++|.+.|++|.+..... .......|+.++...+.+.++..++.+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 4444455666666666666665432221 222344466666666666666666666544
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.45 E-value=3.2 Score=34.92 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=27.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchh
Q 005474 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228 (695)
Q Consensus 175 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 228 (695)
+...|+.+.|++.|...+.. .+-....||.-..++.-.|+.++|++-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 44555666666655555443 122444555555555555555555555554443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.41 E-value=4.7 Score=34.89 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=28.3
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005474 384 MCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440 (695)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (695)
...+.|++++|.+.|+.+...-.. .-....-..|+.+|.+.+++++|...+++.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 334455666666666655543210 112233444555555555555555555555553
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.33 E-value=21 Score=40.02 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHHHHHHH
Q 005474 530 FKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELG 573 (695)
Q Consensus 530 ~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~ 573 (695)
..+++..+.+..... ++..|-.++..+.+.+..+.-.++..+.
T Consensus 720 d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 720 DPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred ChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 456666666555433 5557777777777777655444443333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.31 E-value=9.4 Score=35.39 Aligned_cols=87 Identities=10% Similarity=0.040 Sum_probs=56.0
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 005474 138 ILNNMTNPDTAALALTYFTNKLKASKE-VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216 (695)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 216 (695)
++++++-+.-|.--|...... .|+ +.+||.+.-.+...|+++.|.+.|+...+....-+-...|--|. +--.|++
T Consensus 74 lYDSlGL~~LAR~DftQaLai---~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~ 149 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAI---RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRY 149 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhc---CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCch
Confidence 445555566666666666554 343 55689888888999999999999999887632222222222222 2336788
Q ss_pred hHHHHHHHhchh
Q 005474 217 NKAVEWFERMPS 228 (695)
Q Consensus 217 ~~A~~~~~~m~~ 228 (695)
..|.+-|.+.-+
T Consensus 150 ~LAq~d~~~fYQ 161 (297)
T COG4785 150 KLAQDDLLAFYQ 161 (297)
T ss_pred HhhHHHHHHHHh
Confidence 888776665544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.23 E-value=2.2 Score=47.14 Aligned_cols=213 Identities=14% Similarity=0.110 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcC------------CCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCC
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDML----DRG------------VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230 (695)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~l~~~m~----~~g------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 230 (695)
+.+.++.+|...+++-.-.-++.... ..+ ..........-|..+.+...++.|+.+-+.- +
T Consensus 285 s~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~---~ 361 (933)
T KOG2114|consen 285 SSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ---H 361 (933)
T ss_pred chhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc---C
Confidence 35666777766666543333333322 222 0112233445566666666777776665432 1
Q ss_pred CCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 005474 231 CDPDALTYSSMI----DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306 (695)
Q Consensus 231 ~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 306 (695)
.|..+...+. +.+.+.|++++|...|-+-+.. +.| ..+|.-|....+..+-..+++.+.+.|+. +..
T Consensus 362 --~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~d 432 (933)
T KOG2114|consen 362 --LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSD 432 (933)
T ss_pred --CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cch
Confidence 2333333333 3344567888887777665532 112 23455556666666777777777777764 566
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005474 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386 (695)
Q Consensus 307 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 386 (695)
.-..|+.+|.+.++.+.-.+..+... .|.. ..-....+..+.+.+.+++|..+-..... +...... .+-
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle 501 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLE 501 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHH
Confidence 66777888888888777666665443 2211 11133455666666666666655433322 2333332 334
Q ss_pred hcCCHHHHHHHHHHhH
Q 005474 387 DVGYTDEAFEIFEDMK 402 (695)
Q Consensus 387 ~~g~~~~A~~~~~~m~ 402 (695)
..+++++|++++..+.
T Consensus 502 ~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 502 DLHNYEEALRYISSLP 517 (933)
T ss_pred HhcCHHHHHHHHhcCC
Confidence 5677888888877663
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.01 E-value=12 Score=35.89 Aligned_cols=55 Identities=7% Similarity=-0.039 Sum_probs=34.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005474 280 YGTAGNFDGCLNVYEEMKAIGVK--PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334 (695)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 334 (695)
-.+.|++++|.+.|+.+....+- -...+.-.++.++.+.+++++|...+++..+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34567888888888877754211 12334444556667777777777777776654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.99 E-value=30 Score=40.47 Aligned_cols=134 Identities=13% Similarity=0.182 Sum_probs=78.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005474 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA----YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386 (695)
Q Consensus 311 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 386 (695)
.++.--+.|.+.+|..++ .|+...+..+..+ +.+...+++|--.|+..-+. .--+.+|.
T Consensus 914 ~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~ 976 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYK 976 (1265)
T ss_pred HHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHH
Confidence 334444455555555443 3455444444433 34556666666666544221 12466777
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 005474 387 DVGYTDEAFEIFEDMKSSENCQPDSWT--FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464 (695)
Q Consensus 387 ~~g~~~~A~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 464 (695)
.+|++.+|+.+..++... -|... -..|+.-+...++.-+|-++..+.... | .-.+..|++...|++
T Consensus 977 ~~~dWr~~l~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEG----KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEE 1044 (1265)
T ss_pred HhccHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHH
Confidence 888888888888777542 22222 245666777788888888887776642 1 234556677778888
Q ss_pred HHHHHHHhh
Q 005474 465 VVRALNRLP 473 (695)
Q Consensus 465 A~~~~~~m~ 473 (695)
|+++-....
T Consensus 1045 Alrva~~~~ 1053 (1265)
T KOG1920|consen 1045 ALRVASKAK 1053 (1265)
T ss_pred HHHHHHhcc
Confidence 887766543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.98 E-value=23 Score=39.15 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHH-----HHHcCChHHHHHHHHHHHH
Q 005474 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKL-----YGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 251 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~ 298 (695)
...|.+.++...+.| +...-..+..+ +....+.+.|+.+|+...+
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 345666666666554 22222222221 2344566666666666554
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.98 E-value=22 Score=39.90 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=18.4
Q ss_pred chHHHHH-----HHHhcCCHHHHHHHHHHHHHcCcccC
Q 005474 549 YCNCLID-----LCVNLNLLENACKLLELGLTLEVYTD 581 (695)
Q Consensus 549 ~~~~L~~-----~~~~~g~~~~A~~~l~~~~~~~~~~~ 581 (695)
++..|++ .++..|++++|.+.+++ .++.|.
T Consensus 502 t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~---L~liP~ 536 (613)
T PF04097_consen 502 TFQLLLDLAEFFDLYHAGQYEQALDIIEK---LDLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHH---TT-S-S
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHh---CCCCCC
Confidence 4555554 46788999999887765 556663
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.97 E-value=1.8 Score=42.26 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHhHHH
Q 005474 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA-----IGVKPNMITYNN 310 (695)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 310 (695)
.++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.. .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566777777777777777777777665 56677777777777777777777777776654 466666555544
Q ss_pred HHHH
Q 005474 311 LLDT 314 (695)
Q Consensus 311 li~~ 314 (695)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.14 Score=32.07 Aligned_cols=32 Identities=16% Similarity=-0.090 Sum_probs=19.1
Q ss_pred HHHHHHcCCChhHHHHHHhhhhcchhhHHHHHH
Q 005474 503 VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 535 (695)
Q Consensus 503 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~ 535 (695)
+++.++.+|++..++..||..+...| .+++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g-~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQG-DYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCc-CHHhhc
Confidence 45556666776666666666655555 445543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.35 Score=30.70 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=22.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005474 550 CNCLIDLCVNLNLLENACKLLELGLT 575 (695)
Q Consensus 550 ~~~L~~~~~~~g~~~~A~~~l~~~~~ 575 (695)
|..|+.+|.+.|++++|++++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999764
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.46 E-value=28 Score=39.10 Aligned_cols=427 Identities=14% Similarity=0.048 Sum_probs=215.0
Q ss_pred hHHHHHHHHHHHhcCCCCC--CHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHHcCCh
Q 005474 145 PDTAALALTYFTNKLKASK--EVILYNVTMKVFR-KCRDLDKAERLFDDMLDRGVKPDNV-----TFSTLISCARMNNLP 216 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~-----~~~~li~~~~~~g~~ 216 (695)
...|+..++.+.+...+.| +..++--+...|. ...++++|+..+++.....-.++.. .-..++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 4567777777765555555 3445666667665 6788999999988765432222222 122344566666655
Q ss_pred hHHHHHHHhchhC----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHH--HcCCh
Q 005474 217 NKAVEWFERMPSF----GCDPDALTYSSM-IDAYGRAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYG--TAGNF 286 (695)
Q Consensus 217 ~~A~~~~~~m~~~----g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~--~~g~~ 286 (695)
. |...+++..+. +..+-...|..+ +..+...++...|.+.++.+...- ..+-..++-.++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 88877776542 122223334444 333334478888998888776532 2333444445554444 35556
Q ss_pred HHHHHHHHHHHHcCC---------CCCHHhHHHHHHHH--HhcCChHHHHHHHHHHHH-------CC-C---C-------
Q 005474 287 DGCLNVYEEMKAIGV---------KPNMITYNNLLDTM--GRAKRPWQVKTIYKEMTD-------NG-L---S------- 337 (695)
Q Consensus 287 ~~A~~~~~~m~~~g~---------~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~-------~~-~---~------- 337 (695)
+++.+.++++..... .|...+|..+++.+ ...|+++.+...++++.+ .. . .
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 777777777643221 23456677676654 456776676666555432 10 0 0
Q ss_pred ------------CCH---------HHHHHHHHH--HHhCCChHHHHHHHHHH-------H-HcCCCCC--------HHHH
Q 005474 338 ------------PNW---------NTYASLLRA--YGRARYGEDTLSVYREM-------K-EKGMQLS--------VTLY 378 (695)
Q Consensus 338 ------------~~~---------~~~~~li~~--~~~~g~~~~A~~~~~~m-------~-~~~~~~~--------~~~~ 378 (695)
+.. ....-++.+ ++..+..+.|.+++++. . .....++ ...|
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~ 355 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW 355 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence 000 011111222 23344444665555543 3 1111111 1122
Q ss_pred HHHHH---------HHHhcCCHHHHHHHHHHhHhCCCCCCC-----HHHHHHHHHH--HHHcCCHHHHHHHHH-------
Q 005474 379 NTLLA---------MCADVGYTDEAFEIFEDMKSSENCQPD-----SWTFSSMITI--CSCRGKVSEAEAMFN------- 435 (695)
Q Consensus 379 ~~li~---------~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~li~~--~~~~g~~~~A~~~~~------- 435 (695)
...+. ..+-.|++..|...++.|.+...-.|+ ...+...+.+ +...|+.+.|...|.
T Consensus 356 ~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~ 435 (608)
T PF10345_consen 356 LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLC 435 (608)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhh
Confidence 22222 223468899999999988764321122 2233333333 345799999999997
Q ss_pred -HHHHCCCCCCHHHHHHH--HHHHHHcC--CHhH--HHHHHHHhhh-CCCCC--CHHHHHHHH-HHHhcCCH---HHHHH
Q 005474 436 -EMLEAGFEPNLFVLTSL--IQCYGKAQ--RTDD--VVRALNRLPE-LGITP--DDRFCGCLL-NVMTQTPK---EELGK 501 (695)
Q Consensus 436 -~m~~~g~~p~~~~~~~l--i~~~~~~g--~~~~--A~~~~~~m~~-~g~~p--d~~~~~~ll-~~~~~~~~---~~a~~ 501 (695)
.....+...+..++..+ +-.+...+ ..++ +-.+++.+.. ..-.| +..++..++ .++..... .++..
T Consensus 436 ~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~ 515 (608)
T PF10345_consen 436 EAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKR 515 (608)
T ss_pred hhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHH
Confidence 44444544444444332 11222222 2223 6777776653 22233 333444443 33322221 34444
Q ss_pred HHHHHH-----HcCC-Ch-hHHHHHHhhhhcchhhHHHHHHHHH-H---hcccCc--cccchH-----HHHHHHHhcCCH
Q 005474 502 LVECVE-----KSNS-KL-GYVVKLLLEEQDIEGDFKKEATELF-N---SISKDV--KKAYCN-----CLIDLCVNLNLL 563 (695)
Q Consensus 502 ~~~~~~-----~~~p-~~-~~~~~~l~~~~~~~g~~~~eA~~l~-~---~~~~~~--~~~~~~-----~L~~~~~~~g~~ 563 (695)
.+.... ..+. .. ...+++++..+. .| ...|..+.. . .+...+ ....|- .+.+.+...|+.
T Consensus 516 ~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~-~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~ 593 (608)
T PF10345_consen 516 HLQEALKMANNKLGNSQLLAILLNLMGHRLF-EG-DVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDR 593 (608)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcH
Confidence 333222 1111 11 234577776665 23 333333332 2 122222 333662 344568888999
Q ss_pred HHHHHHHHHHH
Q 005474 564 ENACKLLELGL 574 (695)
Q Consensus 564 ~~A~~~l~~~~ 574 (695)
++|....++..
T Consensus 594 ~ka~~~~~~~~ 604 (608)
T PF10345_consen 594 DKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHH
Confidence 99988877654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.45 E-value=4 Score=39.35 Aligned_cols=88 Identities=13% Similarity=0.067 Sum_probs=38.6
Q ss_pred hCCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-CCCCHHHHHHHHHHHHHcCCHH
Q 005474 352 RARYGEDTLSVYREMKEKGMQ--LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVS 428 (695)
Q Consensus 352 ~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~ 428 (695)
+.|++..|...|....+.... -....+..|..++...|++++|..+|..+.+... .+.-+..+--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344455555555555443211 1122233345555555555555555555544221 0111233344444444555555
Q ss_pred HHHHHHHHHHH
Q 005474 429 EAEAMFNEMLE 439 (695)
Q Consensus 429 ~A~~~~~~m~~ 439 (695)
+|..+|++..+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.15 E-value=5.2 Score=34.64 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=28.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 422 SCRGKVSEAEAMFNEMLEAGF-EP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
.+.|++++|.+.|+.+...-. .+ ....-..++.+|.+.|++++|+..+++.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345666666666666655311 11 233444555566666666666666666554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.12 E-value=28 Score=38.48 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=41.0
Q ss_pred hcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 005474 177 KCRDLDKAERLFDDMLD-------RGVKPDNVTFSTLISCARMNN-----LPNKAVEWFERMPSFGCDPDALTYSSMIDA 244 (695)
Q Consensus 177 ~~g~~~~A~~l~~~m~~-------~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 244 (695)
...+.+.|+..|+.+.+ .| +....+-+-.+|.+.. +.+.|+.+|.+.-+.| .|+...+-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 44567777777766655 33 2223344444444432 3445666665555544 2333322222222
Q ss_pred HHh-cCCHHHHHHHHHHHhhCC
Q 005474 245 YGR-AGNVEMAFGLYDRARNEK 265 (695)
Q Consensus 245 ~~~-~g~~~~A~~~~~~~~~~g 265 (695)
... ..+...|.++|....+.|
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcC
Confidence 222 234556666666666555
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.59 Score=31.21 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 448 VLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
++..+...|...|++++|+++|++.++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555553
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.91 E-value=19 Score=36.16 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=25.5
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHH
Q 005474 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWT----FSSMITICSCRGKVSEAEAMFNEM 437 (695)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~----~~~li~~~~~~g~~~~A~~~~~~m 437 (695)
-++...|.+..|.+.-++..+.....-|..+ ...+.+.|...|+.+.|..-|+..
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3445555555555554443322111122222 234455566666666665555543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.33 E-value=10 Score=32.15 Aligned_cols=134 Identities=12% Similarity=0.181 Sum_probs=65.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhH---HHHHHHHHhcCChHHH
Q 005474 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY---NNLLDTMGRAKRPWQV 324 (695)
Q Consensus 248 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a 324 (695)
.|.+++..++..+.... .+..-+|-+|--....-+-+-..++++.+ |--.|...+ ..++..|.+.|.
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNK---- 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT-----
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcc----
Confidence 46666666766666653 34444554444333333333334444333 222333222 122333333322
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 005474 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404 (695)
Q Consensus 325 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 404 (695)
+.......++...+.|+-++-.+++.++.+ +-+++....-.+..+|.+.|+..++.+++.+.-+.
T Consensus 85 --------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 85 --------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred --------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 233444556666777777777777777664 23446666666777777777777777777777766
Q ss_pred CC
Q 005474 405 EN 406 (695)
Q Consensus 405 ~~ 406 (695)
|.
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 63
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.31 E-value=13 Score=33.32 Aligned_cols=131 Identities=14% Similarity=0.139 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005474 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369 (695)
Q Consensus 290 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (695)
.++++.+.+.++.|+...+..+++.+.+.|++.... .+...++-+|.......+-.+. +....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 344555556667777777777777777777655433 3334444455444443332222 2223333333333332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005474 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435 (695)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 435 (695)
=...+..++..+...|++-+|+++.+...... ..+ ...++.+-.+.++...-..+++
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~--~~~---~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD--SVP---ARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc--cCC---HHHHHHHHHHcCCHHHHHHHHH
Confidence 01134556667777778877777776653322 111 2334444445555443333333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.01 E-value=5.1 Score=38.65 Aligned_cols=63 Identities=13% Similarity=0.007 Sum_probs=26.4
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhh-CCCCCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh
Q 005474 452 LIQCYGKAQRTDDVVRALNRLPE-LGITPDD-RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG 514 (695)
Q Consensus 452 li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~-~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~ 514 (695)
|..++...|++++|..+|..+.+ .+-.|.. ..+--|..+....|+ ++|...++++.+-.|+..
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 44455555555555555554442 2212211 122222223333333 555555555555445433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.83 E-value=3.8 Score=40.07 Aligned_cols=58 Identities=16% Similarity=0.219 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005474 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438 (695)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 438 (695)
..++..+...|+++.+.+.++++.... +-+...|..+|.+|.+.|+...|++.|+++.
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444555555555555555554443 3445555555555555555555555554443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.54 E-value=1.1 Score=29.79 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=9.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 005474 275 TLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
.+...|.+.|++++|+++|++..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.47 E-value=24 Score=35.09 Aligned_cols=153 Identities=11% Similarity=-0.028 Sum_probs=103.6
Q ss_pred HcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCChHH
Q 005474 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE---KWRIDPNAFSTLIKLYGTAGNFDG 288 (695)
Q Consensus 212 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~ 288 (695)
..|+..+|-..++++.+. .+-|...++..=++|.-.|+.+.-...++++... +++....+-..+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 467777777777777764 4567778888888899999999988888888754 222223333444455667899999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 005474 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS---PNWNTYASLLRAYGRARYGEDTLSVYRE 365 (695)
Q Consensus 289 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 365 (695)
|++.-++..+.+ +.|...-.++...+-..|++.++.++..+-...=-. .-..-|=-..-.|...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999998888765 246777778888888889999988876554321000 0011111222345566889999999985
Q ss_pred H
Q 005474 366 M 366 (695)
Q Consensus 366 m 366 (695)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.91 E-value=38 Score=36.61 Aligned_cols=185 Identities=13% Similarity=0.036 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHH
Q 005474 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP--NLFVLTS 451 (695)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ 451 (695)
+..+|+.-+.--...|+.+...-+|+...-. |..-...|-..+.-....|+.+-|..++....+-.++- ....+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 3567777777778888888888888877542 23334455555555566688888888887776643322 2222222
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHH-HHHHHHHHhcCCH-HHHH---HHHHHHHHcCCChh--H-HHHHHhhh
Q 005474 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRF-CGCLLNVMTQTPK-EELG---KLVECVEKSNSKLG--Y-VVKLLLEE 523 (695)
Q Consensus 452 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~ll~~~~~~~~-~~a~---~~~~~~~~~~p~~~--~-~~~~l~~~ 523 (695)
.+ .-..|+++.|..+++...+.- |+.+. -..-+....+.|. +.+. .++.......-+.+ . ..--+.+.
T Consensus 374 ~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 374 RF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred HH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 22 234578899999998887542 54332 1122233344555 4444 22222222111111 1 11112222
Q ss_pred hcchhhHHHHHHHHHHhc-cc-CccccchHHHHHHHHhcCCHH
Q 005474 524 QDIEGDFKKEATELFNSI-SK-DVKKAYCNCLIDLCVNLNLLE 564 (695)
Q Consensus 524 ~~~~g~~~~eA~~l~~~~-~~-~~~~~~~~~L~~~~~~~g~~~ 564 (695)
..+..+..+.|+.++..+ +. +++...|-.+++.+..++...
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence 222222557777777665 33 344557788888877777543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.75 E-value=5.6 Score=36.32 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005474 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID--PNAFSTLIKLYGTAGNFDGCLNVYEEMK 297 (695)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 297 (695)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|......|++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345556666666666666666666655432222 2234555555566666666655555543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.70 E-value=22 Score=33.72 Aligned_cols=201 Identities=15% Similarity=0.137 Sum_probs=94.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCh
Q 005474 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356 (695)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 356 (695)
..+|....++++|...+.+..+- ..-|...| -..+.++.|.-+.++|.+.. --+..|+--...|..+|..
T Consensus 38 AvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kls--Evvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKLS--EVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhCCc
Confidence 34555666677766666555421 11111111 12233455555555555421 1234455566677777777
Q ss_pred HHHHHHHHHHHH--cCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005474 357 EDTLSVYREMKE--KGMQLSV--TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432 (695)
Q Consensus 357 ~~A~~~~~~m~~--~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 432 (695)
+.|-..+++.-+ .+..|+. ..|.--+......++...|.+++ ..+-..+.+..++++|-.
T Consensus 108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~----------------gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY----------------GKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH----------------HHhhhHhhhhHHhhHHHH
Confidence 766666555432 1223322 12222222222223333333332 333344555566666554
Q ss_pred HHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHhhhCC--CCC-CHHHHHHHHHHHhcCCHHHHHHHH
Q 005474 433 MFNEMLE----AGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELG--ITP-DDRFCGCLLNVMTQTPKEELGKLV 503 (695)
Q Consensus 433 ~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p-d~~~~~~ll~~~~~~~~~~a~~~~ 503 (695)
.+.+-.. ..--++ -..|-..|-.|.-..++..|.+.++.--..+ ..+ |..+...||.+|.....+++.+++
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 4433221 000111 1234555556666678888888887632211 122 455777777776655545555544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.55 E-value=5.2 Score=35.38 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccC-ccccchHHHHHHHH
Q 005474 497 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD-VKKAYCNCLIDLCV 558 (695)
Q Consensus 497 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~-~~~~~~~~L~~~~~ 558 (695)
++++.++..+.-+.|+...+--.-++.+..+| .+.+|..+++.+... +..+...+|+-.|.
T Consensus 27 ~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~-~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 27 DDAEALLDALRVLRPEFPELDLFDGWLHIVRG-DWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC-CHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 67777777777777776666555555555556 677777777776433 33344455554443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=88.45 E-value=34 Score=35.60 Aligned_cols=423 Identities=11% Similarity=0.093 Sum_probs=221.5
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHH
Q 005474 138 ILNNMTNPDTAALALTYFTNKLKASKE----VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CAR 211 (695)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~--~~~ 211 (695)
++..-++..+|..+|..+-+...-.|. -+.-+.+|++|... +.+.....+.+..+. .| ...|-.+.. .+-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 445555678888888887665432221 23356777777654 455555666555554 23 334444544 334
Q ss_pred HcCChhHHHHHHHhchhC--CCC------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCHHHH
Q 005474 212 MNNLPNKAVEWFERMPSF--GCD------------PDALTYSSMIDAYGRAGNVEMAFGLYDRARNE----KWRIDPNAF 273 (695)
Q Consensus 212 ~~g~~~~A~~~~~~m~~~--g~~------------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~~~~~~ 273 (695)
+.+.+++|++.+...... +.. +|-..-+..+..+...|.+.++..+++++... ...-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678899999988776543 222 12223355677888999999999998887654 334788889
Q ss_pred HHHHHHHHHc--------CC-------hHHHHHHHHHHHHc------CCCCCHHhHHHHHHHHHhc--CChHHHHHHHHH
Q 005474 274 STLIKLYGTA--------GN-------FDGCLNVYEEMKAI------GVKPNMITYNNLLDTMGRA--KRPWQVKTIYKE 330 (695)
Q Consensus 274 ~~li~~~~~~--------g~-------~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~ 330 (695)
+.++-++.+. .. ++.+.-+.++|... .+-|......+++....-. .+..--.+++..
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 8866666542 11 12222222233221 1223333333333322221 112222333333
Q ss_pred HHHCCCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 005474 331 MTDNGLSPNWN-TYASLLRAYGRARYGEDTLSVYREMKEKGMQ----LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405 (695)
Q Consensus 331 m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 405 (695)
-...-+.|+.. ....++..+.+ +.+++..+-+.+....+. -=..++..++....+.++..+|.+.+..+.-.
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l- 327 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL- 327 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-
Confidence 33444445532 23344444443 445555544444322111 02457888888999999999999998877653
Q ss_pred CCCCCHHHHH-------HHHHHHH----HcCCHHHHHHHHHHHHHCCCCCCH-HHHHH-HHHHHHHcCC-HhHHHHHHHH
Q 005474 406 NCQPDSWTFS-------SMITICS----CRGKVSEAEAMFNEMLEAGFEPNL-FVLTS-LIQCYGKAQR-TDDVVRALNR 471 (695)
Q Consensus 406 ~~~p~~~~~~-------~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~-li~~~~~~g~-~~~A~~~~~~ 471 (695)
.|+...-. .+.+..| ..-+...=..+|++.....+.... +.|-. -..-+.+.|. -+.|+.+++.
T Consensus 328 --dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 --DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred --CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 34433221 2223333 112233445566666654433211 11211 1234555666 7889999998
Q ss_pred hhhCCCCCCHH-----HHHHHHHHHhcCCH----HHHHHHHHHHHHc--CC---ChhHHHHHHhhh--hcchhhHHHHHH
Q 005474 472 LPELGITPDDR-----FCGCLLNVMTQTPK----EELGKLVECVEKS--NS---KLGYVVKLLLEE--QDIEGDFKKEAT 535 (695)
Q Consensus 472 m~~~g~~pd~~-----~~~~ll~~~~~~~~----~~a~~~~~~~~~~--~p---~~~~~~~~l~~~--~~~~g~~~~eA~ 535 (695)
.... .|.+. ++..+=.+|.+.=. .+..++.+-+.+. .| ......|.|+++ +...| .+.++.
T Consensus 406 il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg-ey~kc~ 482 (549)
T PF07079_consen 406 ILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG-EYHKCY 482 (549)
T ss_pred HHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc-cHHHHH
Confidence 8743 34322 22222223322211 2222332323222 12 233444555433 12334 445544
Q ss_pred HHHHhc-ccCccccchHHHHHHHHhcCCHHHHHHHHHH
Q 005474 536 ELFNSI-SKDVKKAYCNCLIDLCVNLNLLENACKLLEL 572 (695)
Q Consensus 536 ~l~~~~-~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~ 572 (695)
-.-.-+ ...|.+.+|.-++-.+....++++|..+|..
T Consensus 483 ~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 483 LYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 332222 4457777888888888999999999999976
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.10 E-value=6.4 Score=35.96 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005474 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN--MITYNNLLDTMGRAKRPWQVKTIYKEMTD 333 (695)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 333 (695)
..+..+...|++.|+.++|++.|.++.+....+. ...+-.+|......+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567778888888888888888888877644333 34556667777777888777777666553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.92 E-value=50 Score=36.87 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHHHH
Q 005474 530 FKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLL 570 (695)
Q Consensus 530 ~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~l 570 (695)
.+++|.++-.+- .+|+-++..+.+.|+..+|..++
T Consensus 636 ~lekA~eiC~q~------~~~~E~VYlLgrmGn~k~AL~lI 670 (846)
T KOG2066|consen 636 NLEKALEICSQK------NFYEELVYLLGRMGNAKEALKLI 670 (846)
T ss_pred CHHHHHHHHHhh------CcHHHHHHHHHhhcchHHHHHHH
Confidence 457777765432 37788888888888888877665
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.40 E-value=21 Score=31.95 Aligned_cols=140 Identities=14% Similarity=0.067 Sum_probs=88.2
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHhchhCCCCCCHH-HHHH
Q 005474 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF-STLISCARMNNLPNKAVEWFERMPSFGCDPDAL-TYSS 240 (695)
Q Consensus 163 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ 240 (695)
.....|...++ +.+.+..++|+.-|..+.+.|..-=...- --........|+...|+..|+++-...-.|... -..-
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34445555554 45667788899999998887653211111 111124567788888888888886644334332 1111
Q ss_pred H--HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 005474 241 M--IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303 (695)
Q Consensus 241 l--i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 303 (695)
| .-.+...|.++......+.+...+-+.-...-.+|.-+-.+.|++.+|.++|+.+......|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1 12345668888888877777766655556666777777778888888888888877643333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.93 E-value=6.2 Score=38.63 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005474 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 390 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (695)
+.++++.++..=..-|+ -||..+++.+|+.+.+.+++.+|.++.-.|..
T Consensus 115 ~pq~~i~~l~npIqYGi-F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGI-FPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhcc-ccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 44455555555555554 55555566666666665555555555555443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.90 E-value=34 Score=33.91 Aligned_cols=232 Identities=12% Similarity=0.062 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHcCCCCCHHhHH
Q 005474 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF----DGCLNVYEEMKAIGVKPNMITYN 309 (695)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~~ 309 (695)
|..+....+.++...|. +++...+..+.. ..|...-...+.++.+.|+. +++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44444444444444443 222222333332 23444444555555555542 3455555544322 23444444
Q ss_pred HHHHHHHhcCCh-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005474 310 NLLDTMGRAKRP-----WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384 (695)
Q Consensus 310 ~li~~~~~~g~~-----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 384 (695)
..+.+++..+.. ..+...+..... .++..+-...+.++.+.++ +++...+-.+.+. +|...-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 444444433211 112222222222 1244444445555555554 3344444444432 233333333444
Q ss_pred HHhcC-CHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 005474 385 CADVG-YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463 (695)
Q Consensus 385 ~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 463 (695)
+.+.+ ....+...+..+.. .+|..+-...+.++.+.|+ ..|...+-+..+.+ + .....+.+++..|..
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 44432 13344444444443 3455555555666666665 34444444444322 2 223455666666663
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 005474 464 DVVRALNRLPELGITPDDRFCGCLLNVM 491 (695)
Q Consensus 464 ~A~~~~~~m~~~g~~pd~~~~~~ll~~~ 491 (695)
+|+..+.++.+. .||..+-...+.+|
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 566666666542 33544444444433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.68 E-value=23 Score=31.70 Aligned_cols=122 Identities=16% Similarity=0.050 Sum_probs=83.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHHcCChhHHH
Q 005474 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS---CARMNNLPNKAV 220 (695)
Q Consensus 144 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~---~~~~~g~~~~A~ 220 (695)
+.++|+..|..+++.+--.-.+..---+.......|+...|...|+++-.....|-..-=..-++ .+...|.++...
T Consensus 73 k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~ 152 (221)
T COG4649 73 KTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVS 152 (221)
T ss_pred CchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHH
Confidence 48899999999987652111222233344556788999999999999987644443331112222 456788898888
Q ss_pred HHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 005474 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265 (695)
Q Consensus 221 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 265 (695)
...+-+-..+-+--...-..|.-+-.+.|++..|.+.|+.+....
T Consensus 153 srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 153 SRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 888777655544445556678788889999999999999988643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.95 E-value=1.5 Score=26.97 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=24.6
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 549 YCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 549 ~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
+|..++.++...|++++|++.++++++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 56788999999999999999999998754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=85.28 E-value=2.1 Score=27.07 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDML 192 (695)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~l~~~m~ 192 (695)
+|+.|..+|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36667777777777777777777743
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.47 E-value=29 Score=30.81 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=9.8
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 005474 280 YGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~ 298 (695)
+.+.|++++|+.+|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3445555555555555444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.31 E-value=2 Score=26.50 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=25.1
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 549 YCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 549 ~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
+|..++.++...|++++|+..++++++..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 57789999999999999999999998754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.24 E-value=44 Score=32.72 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhh-----hCCCCCCHHH
Q 005474 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLP-----ELGITPDDRF 483 (695)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~pd~~~ 483 (695)
+.....|..+|.+.+|.++.++.+.. .| +...|-.++..++..|+--.|.+-++++. +.|+..|...
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltl--dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTL--DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 44556677788888888877777763 33 66667777777887787766666666553 3466555443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.16 E-value=61 Score=34.36 Aligned_cols=181 Identities=11% Similarity=0.141 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005474 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346 (695)
Q Consensus 267 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 346 (695)
..|....-+++..+..+-.+.-...+..+|...| -+...|..++..|... ..++-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4455666667777777777777777777777654 2566677777777766 556666777766665432 33434444
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHH
Q 005474 347 LRAYGRARYGEDTLSVYREMKEKGMQL-----SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421 (695)
Q Consensus 347 i~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 421 (695)
...|-+ ++...+..+|.++..+-++- -...|.-|... -..+.+....+...+........-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444444 66677777777665442210 01133333221 12345666666665554332233444455555666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005474 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455 (695)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 455 (695)
....++++|.+++..+.++. ..|...-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 66777777777777776643 2244444444443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.96 E-value=1.9 Score=27.99 Aligned_cols=27 Identities=30% Similarity=0.201 Sum_probs=23.3
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005474 549 YCNCLIDLCVNLNLLENACKLLELGLT 575 (695)
Q Consensus 549 ~~~~L~~~~~~~g~~~~A~~~l~~~~~ 575 (695)
+++.|+.+|...|++++|..+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 578899999999999999999999874
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=83.19 E-value=49 Score=32.50 Aligned_cols=138 Identities=15% Similarity=0.192 Sum_probs=87.6
Q ss_pred cCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHH-cCC-hhHHHHHHHhch-hCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005474 178 CRDLDKAERLFDDMLD-RGVKPDNVTFSTLISCARM-NNL-PNKAVEWFERMP-SFGCDPDALTYSSMIDAYGRAGNVEM 253 (695)
Q Consensus 178 ~g~~~~A~~l~~~m~~-~g~~p~~~~~~~li~~~~~-~g~-~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~ 253 (695)
+..+.+|+++|+.... ..+--|..+...+++.... .+. ...-.++.+-+. ..|-.++..+...+|..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 4455677777773222 2244566666667765554 222 222223333333 23456777788888899999999999
Q ss_pred HHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-----HHHcCCCCCHHhHHHHHHHH
Q 005474 254 AFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE-----MKAIGVKPNMITYNNLLDTM 315 (695)
Q Consensus 254 A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~~~~~~~li~~~ 315 (695)
-.++++..... +..-|...|..+|+.....|+..-...+.++ +++.++..+...-..+-..+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 88888887755 5567888899999999999988777666654 34455655555554444433
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=82.00 E-value=54 Score=32.13 Aligned_cols=26 Identities=23% Similarity=0.005 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005474 374 SVTLYNTLLAMCADVGYTDEAFEIFE 399 (695)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~ 399 (695)
|......+...|.+.|++.+|+..|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 45566667777777777777776654
|
; PDB: 3LKU_E 2WPV_G. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.86 E-value=57 Score=32.35 Aligned_cols=222 Identities=11% Similarity=0.044 Sum_probs=132.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCCHHH
Q 005474 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP----WQVKTIYKEMTDNGLSPNWNT 342 (695)
Q Consensus 267 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~~ 342 (695)
.+|..+....+..+...|. +++...+..+.. .+|...-...+.+++..|+. .++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 4567777777777777775 344444444544 24666666777778887764 4567777766433 356666
Q ss_pred HHHHHHHHHhCCCh-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHH
Q 005474 343 YASLLRAYGRARYG-----EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417 (695)
Q Consensus 343 ~~~li~~~~~~g~~-----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 417 (695)
-...+.++...+.. ..+...+...... ++..+-...+.++.+.|+ ++++..+..+.+. +|...-...
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A 179 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWA 179 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHH
Confidence 66666666555421 2233333333222 255555567777777776 4566666666653 344455555
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH
Q 005474 418 ITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496 (695)
Q Consensus 418 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~ 496 (695)
+.++.+.+ +-..+...+..+.. .+|..+-...+.++.+.|+ ..|+..+-+..+.+. .....+.++...|.
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~ 250 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCC
Confidence 55555543 24456666666664 3677777788888888887 466666666655432 23456666777777
Q ss_pred HHHHHHHHHHHHcCC
Q 005474 497 EELGKLVECVEKSNS 511 (695)
Q Consensus 497 ~~a~~~~~~~~~~~p 511 (695)
.++...+..+...+|
T Consensus 251 ~~a~p~L~~l~~~~~ 265 (280)
T PRK09687 251 KTLLPVLDTLLYKFD 265 (280)
T ss_pred HhHHHHHHHHHhhCC
Confidence 777777777666555
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.81 E-value=14 Score=32.24 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccCc-cccchHHHHHH-HHhcCC
Q 005474 497 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV-KKAYCNCLIDL-CVNLNL 562 (695)
Q Consensus 497 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~~-~~~~~~~L~~~-~~~~g~ 562 (695)
++++.+++.+.-+.|+...+--+-|+.+..+| .++||..+++.+.... ..+...+|.-. +.-.||
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg-~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDMFDGWLLIARG-NYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHHHHHhCCCccccchhHHHHHHHcC-CHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 77777777777777777766656666666667 7788888888775554 33344444433 344455
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.03 E-value=45 Score=30.62 Aligned_cols=93 Identities=14% Similarity=0.032 Sum_probs=60.4
Q ss_pred HHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHH
Q 005474 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK 532 (695)
Q Consensus 453 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (695)
...+...|++++|..-++..... |.+..+..++. --|++.+...| ..|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~----------------------------lRLArvq~q~~-k~D 143 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA----------------------------LRLARVQLQQK-KAD 143 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH----------------------------HHHHHHHHHhh-hHH
Confidence 45667778888888887765532 33333433332 22344445556 678
Q ss_pred HHHHHHHhcccCc-cccchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 533 EATELFNSISKDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 533 eA~~l~~~~~~~~-~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
+|...++....+. .......-+|++...|+.++|+.-++++++..
T Consensus 144 ~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 144 AALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 8888777654332 11233556789999999999999999998875
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.74 E-value=12 Score=33.74 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHhhhhcchh----------hHHHHHHHHHHhc-ccCccccchHHHHHHH
Q 005474 497 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----------DFKKEATELFNSI-SKDVKKAYCNCLIDLC 557 (695)
Q Consensus 497 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------~~~~eA~~l~~~~-~~~~~~~~~~~L~~~~ 557 (695)
++|..-|++++.++|+...++..+|.++...+ ..+++|.+.|++. ..+|+...|+--+..+
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 45555667777899998888888887776543 1234455555444 4567766665444433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=80.66 E-value=2.6 Score=26.29 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHH
Q 005474 268 IDPNAFSTLIKLYGTAGNFDGC 289 (695)
Q Consensus 268 ~~~~~~~~li~~~~~~g~~~~A 289 (695)
-+..+|+.+...|...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3444555555555555555544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.06 E-value=14 Score=29.37 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005474 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368 (695)
Q Consensus 320 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (695)
+..++.+-++.+....+.|+.....+.+.+|.+.+++..|.++|+-++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3345555566666666666666666666666666666666666666553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.8 bits (200), Expect = 4e-16
Identities = 32/271 (11%), Positives = 68/271 (25%), Gaps = 34/271 (12%)
Query: 176 RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
+ A L D P + L+ A + +
Sbjct: 68 PRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQ 127
Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
+ + +A L L V+
Sbjct: 128 QRLLAFFKCCLLTDQLPLAHHL--------------------------------LVVHHG 155
Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-R 354
+ + YN ++ R ++ + + D GL+P+ +YA+ L+ GR +
Sbjct: 156 QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215
Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
+M ++G++L LL+ D +A + S P
Sbjct: 216 DAGTIERCLEQMSQEGLKLQALFTAVLLSEE-DRATVLKAVHKVKPTFSLPPQLPPPVNT 274
Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
S ++ + + +
Sbjct: 275 SKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 78.3 bits (191), Expect = 5e-15
Identities = 36/273 (13%), Positives = 82/273 (30%), Gaps = 9/273 (3%)
Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
SP A LL+ + + + + + C
Sbjct: 81 DCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLT 140
Query: 389 GYTDEAFEIFEDMKS--SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
A + + +++++ + +G E + + +AG P+L
Sbjct: 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200
Query: 447 FVLTSLIQCYGKA-QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 505
+ +QC G+ Q + R L ++ + G+ F LL+ + + K V
Sbjct: 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE---DRATVLKAVHK 257
Query: 506 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNL--- 562
V+ + S + + + + + K+ + + +K C L + L
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVC 317
Query: 563 LENACKLLELGLTLEVYTDIQSRSPTQWSLHLK 595
+ + K ++ QW L
Sbjct: 318 VVSVEKPTLPSKEVKHARKTLKTLRDQWEKALC 350
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 75.6 bits (184), Expect = 3e-14
Identities = 33/246 (13%), Positives = 69/246 (28%), Gaps = 5/246 (2%)
Query: 38 KTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDT 97
K + Q R L+ + S + E ++
Sbjct: 34 KRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEE 93
Query: 98 RYNSLVKLAADLDSCSATEDDVF--SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYF 155
+ L++ A S + S + G A L
Sbjct: 94 QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153
Query: 156 TNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARM 212
+ + K + +YN M + + + + + D G+ PD ++++ + C R
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213
Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
+ E+M G AL + ++ RA ++ + P
Sbjct: 214 DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
Query: 273 FSTLIK 278
S L++
Sbjct: 274 TSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 63.3 bits (152), Expect = 2e-10
Identities = 13/165 (7%), Positives = 48/165 (29%)
Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
+ + + G + ++ + + + ++ + Y +++
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174
Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
+ R ++ + V +K+ G+ + Y L E + S E +
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234
Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
+ + +++ + + P + L++
Sbjct: 235 QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 3e-12
Identities = 73/455 (16%), Positives = 142/455 (31%), Gaps = 133/455 (29%)
Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
EE+ I + + ++ L +K+ + + ++ + L N+ S ++ R
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQ----EEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-ENCQPDSW 412
+ Y E +++ LYN Y + + ++ + +P
Sbjct: 105 PSMMTRM--YIEQRDR-------LYNDNQVF---AKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 413 TFSSMITICS---CRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
+ I GK + + ++ + +F L + V+
Sbjct: 153 -----VLIDGVLGS-GKTWVALDVCLSYKVQCKMDFKIFWLN-----LKNCNSPETVLEM 201
Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 528
L +L ++ S S +KL +
Sbjct: 202 LQKL-------------LYQ--------------IDPNWTSRSDHSSNIKLRIH------ 228
Query: 529 DFKKEATELFNSISKDVKKAYCNCLI---DLCVNLNLLE---NACKLLELGLT---LEVY 579
+ E L S K Y NCL+ ++ N +CK+L LT +V
Sbjct: 229 SIQAELRRLLKS------KPYENCLLVLLNVQ-NAKAWNAFNLSCKIL---LTTRFKQVT 278
Query: 580 TDIQSRSPTQWSL--HLKSLSLGAALTALHIWIN----DLSKALESGEEFPPLL------ 627
+ + + T SL H +L+ + L +++ DL + + + P
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAE 335
Query: 628 ----GINT-GHGKHKYSDKGLASVFESHLKELNAP-----------FHDS---PDKV--- 665
G+ T + KH DK L ++ ES L L F S P +
Sbjct: 336 SIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 666 GWF---------LTTEAAAKSWLESR--SSLVSVP 689
WF + + S +E + S +S+P
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 1e-09
Identities = 91/590 (15%), Positives = 181/590 (30%), Gaps = 176/590 (29%)
Query: 118 DVFSVLRCLGDDFLEQ-DCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFR 176
D+ SV D F++ DC + D L+ +E+ +
Sbjct: 20 DILSVFE---DAFVDNFDCKDV------QDMPKSILS--------KEEI------DHIIM 56
Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVT--FSTLISCARMNNLPNKAVEWF-ERMPSFGCDP 233
+ RLF +L K + + F + + ++ + + P
Sbjct: 57 SKDAVSGTLRLFWTLLS---KQEEMVQKF--------VEEVLRINYKFLMSPIKTEQRQP 105
Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW--------RIDPNAFSTLIKLYGTAGN 285
++ I+ R N F Y+ +R + + + P + + G G+
Sbjct: 106 -SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN---VLIDGVLGS 161
Query: 286 FDG--CL--NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
G + +V K I + L + P V + +++ + PNW
Sbjct: 162 --GKTWVALDVCLSYKVQCKMDFKIFW---L-NLKNCNSPETVLEMLQKLLYQ-IDPNWT 214
Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD--EAFEIFE 399
+ + + R + R +K K + N LL + +V AF +
Sbjct: 215 SRSDHSSNI-KLRIHSIQAELRRLLKSKPYE------NCLLVL-LNVQNAKAWNAFNL-- 264
Query: 400 DMKSSENCQPDSWTFSSMITICSCRGK-------VSEAEAMFNEMLEAGFEPNLFVLTSL 452
+C+ ++T R K + + + P+ V + L
Sbjct: 265 ------SCK-------ILLT---TRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLL 307
Query: 453 IQCYGKAQRTDDVVRALNRLPE--LGITPDDRFCGCLLNVMTQTPKEELG-----KLVEC 505
++ R D LP L P L+++ ++ ++ L K V C
Sbjct: 308 LKYLD--CRPQD-------LPREVLTTNP------RRLSIIAESIRDGLATWDNWKHVNC 352
Query: 506 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS---KDVK---KAYC--------- 550
KL +++ L + +++K +F+ +S
Sbjct: 353 -----DKLTTIIESSLNVLE-PAEYRK----MFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 551 --NCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHI 608
+++ +L+E K T+ + S++L+ ALH
Sbjct: 403 DVMVVVNKLHKYSLVEKQPK----ESTISIP-----------SIYLELKVKLENEYALHR 447
Query: 609 WIND---LSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELN 655
I D + K +S + PP Y D+ S HLK +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPP------------YLDQYFYSHIGHHLKNIE 485
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 2e-07
Identities = 83/543 (15%), Positives = 153/543 (28%), Gaps = 188/543 (34%)
Query: 20 RRTFTFSFQRDDSLSFYSKTSLQKRSVS-----------LQETQSSNPTKHSQNPQYP-- 66
T + QRD + K +VS L E + + +
Sbjct: 107 MMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPYLKLRQALLELRPA---------KNVLI 155
Query: 67 HGKTGSSPKSYIWVNPKSPRASKLKEKSYD-------TRYNS-------LVKLAADLDSC 112
G GS K+ WV + K++ K NS L KL +D
Sbjct: 156 DGVLGSG-KT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 113 SATEDDVFSVLRCLGDD-------FLEQ----DCVIILNNMTNPDTAA--------LALT 153
+ D S ++ L+ +C+++L N+ N L T
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 154 YF---TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA 210
F T+ L A+ ++++ D+ + L L +P
Sbjct: 273 RFKQVTDFLSAATT---THISLDHHSMTLTPDEVKSLLLKYL--DCRPQ----------- 316
Query: 211 RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR-ID 269
+LP + + +P L S+I R G A + W+ ++
Sbjct: 317 ---DLPREVL---------TTNPRRL---SIIAESIRDG----------LATWDNWKHVN 351
Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYE--EMK------AI---GVKPNMITYNNLLDTMGRA 318
+ +T+I+ LNV E E + ++ I L
Sbjct: 352 CDKLTTIIES---------SLNVLEPAEYRKMFDRLSVFPPSAH---IPTILL------- 392
Query: 319 KRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS--- 374
W V + N L Y+ + + + S+Y E+K K
Sbjct: 393 SLIWFDVIKSDVMVVVNKLH----KYSLVEKQPKESTIS--IPSIYLELKVKLENEYALH 446
Query: 375 ---VTLYNTLLAMCAD--------------VGY------TDEAFEIFEDM---------- 401
V YN +D +G+ E +F +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 402 --KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA------GFEPNLFV--LTS 451
S +++ + + + + + + ++ A E NL T
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 452 LIQ 454
L++
Sbjct: 567 LLR 569
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 2e-05
Identities = 40/297 (13%), Positives = 95/297 (31%), Gaps = 26/297 (8%)
Query: 250 NVEMAF--GLYDRARNEKWRIDPN-------AFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
+V+ AF G Y + NE R+ P+ L + Y + L+ +
Sbjct: 5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSS--- 61
Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL-RAYGRARYGEDT 359
P + + + R + + T+ + Y + +
Sbjct: 62 -APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120
Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
L + ++ LL + D A + + M+ + + ++ ++
Sbjct: 121 LRTLHQGDS--LECMAMTVQILLKL----DRLDLARKELKKMQDQDEDATLTQLATAWVS 174
Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT- 478
+ + K+ +A +F EM + P L +L C+ R + L +
Sbjct: 175 LAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233
Query: 479 PDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 535
P+ +L+ P E + + ++ ++ ++ + + E DF +
Sbjct: 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY----RAKENDFDRLVL 286
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 8e-05
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 10/100 (10%)
Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
++ ++ + + + + AY + N + A+ Y + PN
Sbjct: 35 IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL----QKAPNNVDC 90
Query: 276 LIKL---YGTAGNFDGCLNVYEEMKAIGVKP-NMITYNNL 311
L G L +YE K + ++ N+ L
Sbjct: 91 LEACAEMQVCRGQEKDALRMYE--KILQLEADNLAANIFL 128
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 31/246 (12%), Positives = 68/246 (27%), Gaps = 32/246 (13%)
Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
Y S Y +A ++A+ +A+ + + + +E+
Sbjct: 32 YDSAASEYAKAAVAFKNAKQLEQAK--------DAYLQEAEAHANNRSLFHAAKAFEQAG 83
Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
+ +L + + +Y E + +
Sbjct: 84 MM--------LKDLQRMPEAVQYIEKASVMYVENGTPDTAA--MALDRAGKLMEPLDL-S 132
Query: 358 DTLSVYRE-----MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS----SENCQ 408
+ +Y++ E+ ++ + L + DEA + KS EN
Sbjct: 133 KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192
Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLE-AGFEPN--LFVLTSLIQCYGKAQRTDDV 465
+ + + R A+ E GF + L L+Q Y Q + +
Sbjct: 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQL 251
Query: 466 VRALNR 471
+R
Sbjct: 252 LRVCRS 257
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 19/111 (17%), Positives = 29/111 (26%), Gaps = 15/111 (13%)
Query: 217 NKAVEWFERMPSFGCDPD-ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN---A 272
E E M + D L ++ Y + A A DP A
Sbjct: 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAAL----DFDPTYSVA 55
Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN---MITYNNLLDTMGRAKR 320
+ L K G+ G +E + + L + R R
Sbjct: 56 WKWLGKTLQGQGDRAGARQAWE--SGLAAAQSRGDQQVVKELQVFLRRLAR 104
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 5e-04
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 232 DP-DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN---AFSTLIKLYGTAGNFD 287
DP D T ++ + + N A L++ DP+ + L KLY D
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELV----ETDPDYVGTYYHLGKLYERLDRTD 58
Query: 288 GCLNVYEEMKAIGVKPNMITYNNL--LDTMGRAKR 320
++ Y + I V L + AK
Sbjct: 59 DAIDTYA--QGIEVARE---EGTQKDLSELQDAKL 88
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 9e-04
Identities = 28/212 (13%), Positives = 53/212 (25%), Gaps = 27/212 (12%)
Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM- 296
+ D +A + + A ++F AGN D N Y E
Sbjct: 33 FEEAADLCVQAATIYRLRKELNLAG--------DSFLKAADYQKKAGNEDEAGNTYVEAY 84
Query: 297 ----KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
+ + N + + + E+ + + + + YA + Y
Sbjct: 85 KCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN-DLHDYAKAIDCYEL 143
Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
A Y + + + + + A G EA +I+ + S S
Sbjct: 144 A------GEWYAQDQSVALSNKC--FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195
Query: 413 -----TFSSMITICSCRGKVSEAEAMFNEMLE 439
F A E
Sbjct: 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 695 | ||||
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.004 |
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.3 bits (85), Expect = 0.004
Identities = 39/255 (15%), Positives = 72/255 (28%), Gaps = 35/255 (13%)
Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM- 296
+ D +A + + A ++F AGN D N Y E
Sbjct: 33 FEEAADLCVQAATIYRLRKELNLAG--------DSFLKAADYQKKAGNEDEAGNTYVEAY 84
Query: 297 ---KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
K+ G N + + + ++ +K L + + YA + Y A
Sbjct: 85 KCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA 144
Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE-----DMKSSENCQ 408
+++ + LS + + A G EA +I+ M + +
Sbjct: 145 G--------EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196
Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF------VLTSLIQCY--GKAQ 460
F A E +PN L SLI G ++
Sbjct: 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254
Query: 461 RTDDVVRALNRLPEL 475
+ + + + L
Sbjct: 255 QLSEHCKEFDNFMRL 269
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 695 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.39 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.37 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.37 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.37 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.3 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.24 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.19 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.19 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.07 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.68 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.66 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.48 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.25 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.22 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.2 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.12 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.88 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.72 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.66 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.57 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.52 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.52 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.51 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.4 | |
| d2d9ia1 | 83 | Nedd4-binding protein 2 {Human (Homo sapiens) [Tax | 97.35 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.35 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.29 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.23 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.22 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.0 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.9 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.86 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.85 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.8 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 94.6 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 88.01 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.9e-22 Score=154.20 Aligned_cols=378 Identities=12% Similarity=0.047 Sum_probs=164.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99944998899999999998699979887999999999769915999999864129999999999999999984599779
Q 005474 174 VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253 (695)
Q Consensus 174 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 253 (695)
.+.+.|++++|.+.++++.+.. +-+...+..+..++...|++++|+..|++..+.. +-+..++..+...+.+.|++++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9998699999999999999868-9989999999999998699999999999999859-9989999999999642000222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999639999899999999999998199479999999999869998877699999999824995799999999998
Q 005474 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333 (695)
Q Consensus 254 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 333 (695)
|...+....... +.+..............+....+............ ................+....+...+.....
T Consensus 86 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 222222121122-22222222222222222222222222111222222-2222222222222110001356788887402
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 89999999999999999817996899999999998699999999999999999559999999999994748999999999
Q 005474 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413 (695)
Q Consensus 334 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~ 413 (695)
.. +.+...+..+...+...++.+.|...++...+.... +...+..+...+...|++++|...++...... ..+...
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 239 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVV 239 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHH
T ss_pred CC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--HHHHHH
T ss_conf 58-610689986363010247199999999999984946-49999997155220052999999999857775--547999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999999973998999999999998899889999999999999729976999999980449999899889999999932
Q 005474 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493 (695)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 493 (695)
+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|+..++...... ..+...+..+...+..
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHH
T ss_conf 9999999998789999999999999849-9989999999999997487999999998654048-7300101579999998
Q ss_pred CCH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCCCC-CCHHHHHHHHHHCCC
Q ss_conf 997-999999999997098845899998540000100799999988730-238653-114899999995599
Q 005474 494 TPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKK-AYCNCLIDLCVNLNL 562 (695)
Q Consensus 494 ~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~-~~~~~L~~~~~~~g~ 562 (695)
.|+ ++|...+++..+.+|+...+...+|..+...| ..++|.+.+++. ...|+. ..|..|+.++.+.||
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG-KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT-CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 789999999999999868898999999999999859-99999999999997099989999999999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=7.9e-21 Score=145.90 Aligned_cols=376 Identities=14% Similarity=0.110 Sum_probs=278.5
Q ss_pred HHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 93079379999999998417999888689999999994499889999999999869997988799999999976991599
Q 005474 140 NNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219 (695)
Q Consensus 140 ~~l~~~~~A~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 219 (695)
-..++++.|...++.+.... +.+..++..+..++.+.|++++|...|+...+.. +-+..++..+..++...|++++|
T Consensus 10 ~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 98699999999999999868--9989999999999998699999999999999859-99899999999996420002222
Q ss_pred HHHHHHCHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99998641299999999999999999845997799999999963999989999999999999819947999999999986
Q 005474 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 220 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 299 (695)
++.+....... ..+..............+....+........... .................+....+...+......
T Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 22222121122-2222222222222222222222222211122222-222222222222221100013567888874025
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99988776999999998249957999999999988999999999999999981799689999999999869999999999
Q 005474 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379 (695)
Q Consensus 300 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 379 (695)
.. -+...+..+...+...|+++.|...++...... +.+...+..+...+...|++++|...++........ +...+.
T Consensus 165 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 241 (388)
T d1w3ba_ 165 QP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHG 241 (388)
T ss_dssp CT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CC-CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHH
T ss_conf 86-106899863630102471999999999999849-464999999715522005299999999985777554-799999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999995599999999999947489999999999999999997399899999999999889988999999999999972
Q 005474 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459 (695)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 459 (695)
.+...+.+.|++++|...+++..+.. +.+...+..+...+...|+.++|.+.++...... +.+...+..+...+.+.
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHC
T ss_conf 99999998789999999999999849--9989999999999997487999999998654048-73001015799999987
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHH
Q ss_conf 997699999998044999989-9889999999932997-99999999999709884589999854000010
Q 005474 460 QRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 528 (695)
Q Consensus 460 g~~~~A~~~~~~m~~~g~~pd-~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (695)
|++++|+..|++..+. .|+ ...+..+..++...|+ ++|...+++..+++|++......||..+.+.|
T Consensus 319 ~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 8999999999999986--88989999999999998599999999999999709998999999999999858
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=6.3e-13 Score=95.58 Aligned_cols=115 Identities=12% Similarity=0.015 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 6899999999998699-999999999999999559999999999994748999999999999999999739989999999
Q 005474 356 GEDTLSVYREMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434 (695)
Q Consensus 356 ~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 434 (695)
..++...|....+... ..+...+..+...+...|++++|...++...... +.+...+..+...|...|++++|.+.+
T Consensus 152 ~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~ 229 (323)
T d1fcha_ 152 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAY 229 (323)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCHHHHHHCCCCCCCCHHHHHHH
T ss_conf 999999999999971301222111036888888887755002111222222--222111013330122111101378887
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999988998899999999999997299769999999804
Q 005474 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 435 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
++..+.. +-+...|..+..+|.+.|++++|+..|++..
T Consensus 230 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 267 (323)
T d1fcha_ 230 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 267 (323)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHH-HCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 7899884-3249999999999998789999999999999
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.2e-13 Score=100.29 Aligned_cols=251 Identities=12% Similarity=0.013 Sum_probs=130.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999845997799999999963999989999999999999819947999999999986999887769999999982499
Q 005474 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320 (695)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 320 (695)
....+.+.|++++|...|+++.+.. +-+..+|..+...|...|++++|...|++..+... -+...+..+...+...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCC
T ss_conf 9999998599999999999999868-99899999999999983775889999985100222-222222222222222221
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 57999999999988999999999999999981799689999999999869999999999999999955999999999999
Q 005474 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400 (695)
Q Consensus 321 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 400 (695)
+++|.+.++...... |+.............. .+.......+..+...+...++...+..
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHC--CCHHHHHHHHHHHHHH-------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 121110002677736--1067888766400000-------------------0010000147888876579999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-
Q ss_conf 4748999999999999999999739989999999999988998899999999999997299769999999804499998-
Q 005474 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP- 479 (695)
Q Consensus 401 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 479 (695)
......-..+...+..+...+...|++++|...+++..... +-+...|..+...|...|++++|+..|++..+. .|
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 238 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPG 238 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH--HHC
T ss_conf 99971301222111036888888887755002111222222-222111013330122111101378887789988--432
Q ss_pred CHHHHHHHHHHHHCCCH-HHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99889999999932997-999999999997098845899
Q 005474 480 DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV 517 (695)
Q Consensus 480 d~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~ 517 (695)
+...+..+..++...|+ ++|...+++...++|+.....
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 277 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 277 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 499999999999987899999999999997097570011
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.39 E-value=2.2e-09 Score=73.03 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 79999999996399998999999999999981994799999999998699988776999999998249957999999999
Q 005474 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331 (695)
Q Consensus 252 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 331 (695)
+++..+|++......+.+...|...+..+.+.|+.+.|..+|+++...........|...+..+.+.++.+.|.++|+.+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999874998799999999999861338999999999998715786999999999999827868899999999
Q ss_pred H
Q ss_conf 9
Q 005474 332 T 332 (695)
Q Consensus 332 ~ 332 (695)
.
T Consensus 161 l 161 (308)
T d2onda1 161 R 161 (308)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.37 E-value=2.5e-09 Score=72.66 Aligned_cols=183 Identities=16% Similarity=0.144 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 79999999999869998877699999999824995799999999998899999999999999998179968999999999
Q 005474 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366 (695)
Q Consensus 287 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 366 (695)
+++..+|++..+...+.+...|...+....+.|+.+.|..+|+.+...........|...+....+.+..+.|..+|..+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999874998799999999999861338999999999998715786999999999999827868899999999
Q ss_pred HHCCCCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCC
Q ss_conf 98699999999999999-9995599999999999947489999999999999999997399899999999999889-988
Q 005474 367 KEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEP 444 (695)
Q Consensus 367 ~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 444 (695)
.+.... +...|..... -+...|+.+.|..+|+.+.... +.+...+...++...+.|+++.|..+|++..... ..|
T Consensus 161 l~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 161 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 980888-679999999999876557789999999999861--00388999999999986986899999999998278986
Q ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf --9999999999999729976999999980
Q 005474 445 --NLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 445 --~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
....|...+..-..+|+.+.+..+++++
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 899999999999999849999999999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=4.8e-09 Score=70.87 Aligned_cols=151 Identities=6% Similarity=0.036 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 937999999999841799988868999999999449-9889999999999869997988799999999976991599999
Q 005474 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR-DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222 (695)
Q Consensus 144 ~~~~A~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 222 (695)
+.++|+..++.+.... +-+..+|+....++...+ ++++|+..++...+.. +-+..+|+.+..++...|++++|++.
T Consensus 58 ~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~eAl~~ 134 (315)
T d2h6fa1 58 RSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEF 134 (315)
T ss_dssp CCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 6699999999999879--88769999999999983767999999999999887-74226898875888850537889988
Q ss_pred HHHCHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHH
Q ss_conf 986412999999999999999998459977999999999639999899999999999998199------47999999999
Q 005474 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN------FDGCLNVYEEM 296 (695)
Q Consensus 223 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~m 296 (695)
++++.+.. +.+...|..+...+.+.|++++|+..++++++.. +.+...|+.+...+.+.+. +++|++.+...
T Consensus 135 ~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~a 212 (315)
T d2h6fa1 135 IADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 212 (315)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 75554321-0046889988778888886678999999999879-744999988999998745631023547767999999
Q ss_pred HHC
Q ss_conf 986
Q 005474 297 KAI 299 (695)
Q Consensus 297 ~~~ 299 (695)
.+.
T Consensus 213 l~~ 215 (315)
T d2h6fa1 213 IKL 215 (315)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 984
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.8e-09 Score=73.57 Aligned_cols=197 Identities=9% Similarity=0.004 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHCHHCCCCCCHHHHHHHHH
Q ss_conf 86899999999944998899999999998699979887999999999769-91599999986412999999999999999
Q 005474 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN-LPNKAVEWFERMPSFGCDPDALTYSSMID 243 (695)
Q Consensus 165 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 243 (695)
..+|+.+..++.+.+.+++|+++++.+++.. +-+...|+....++...+ ++++|++.++...+.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 9999999999995886699999999999879-88769999999999983767999999999999887-742268988758
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---
Q ss_conf 99845997799999999963999989999999999999819947999999999986999887769999999982499---
Q 005474 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR--- 320 (695)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--- 320 (695)
.+.+.|++++|+..++++.+.. +.+..+|..+...+.+.|++++|++.++++.+..+. +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCCH
T ss_conf 8885053788998875554321-004688998877888888667899999999987974-49999889999987456310
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf ---57999999999988999999999999999981799689999999999
Q 005474 321 ---PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367 (695)
Q Consensus 321 ---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 367 (695)
+++|...+....+.. +.+...+..+...+.. ...+++.+.++...
T Consensus 199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH-CCHHHHHHHHHHHH
T ss_conf 235477679999999849-8856999998779886-27188999999999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=2.8e-08 Score=66.01 Aligned_cols=163 Identities=13% Similarity=-0.005 Sum_probs=67.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCC----HHHHHH
Q ss_conf 9999982499579999999999889----9999999999999998179968999999999986--99999----999999
Q 005474 311 LLDTMGRAKRPWQVKTIYKEMTDNG----LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK--GMQLS----VTLYNT 380 (695)
Q Consensus 311 li~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~----~~~~~~ 380 (695)
+...+...|+++.+...+....... .......+......+...+....+...+...... ..... ...+..
T Consensus 139 la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 218 (366)
T d1hz4a_ 139 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 218 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 87899981456666899999888766300246899998888888764667888899999999998731157269999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHH
Q ss_conf 999999559999999999994748999--99999999999999973998999999999998----89988-999999999
Q 005474 381 LLAMCADVGYTDEAFEIFEDMKSSENC--QPDSWTFSSMITICSCRGKVSEAEAMFNEMLE----AGFEP-NLFVLTSLI 453 (695)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~~~~~li 453 (695)
+...+...|+.++|...+......... ......+..+...+...|++++|...+++... .+..| ....+..+.
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 298 (366)
T d1hz4a_ 219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 298 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999860448989999999997622466677788999999998758799999999999988764266747999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHH
Q ss_conf 99997299769999999804
Q 005474 454 QCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~m~ 473 (695)
..|...|++++|...+++..
T Consensus 299 ~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 299 QLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
T ss_conf 99998789999999999999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=6e-08 Score=63.91 Aligned_cols=27 Identities=19% Similarity=0.001 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 148999999955998899999999987
Q 005474 549 YCNCLIDLCVNLNLLENACKLLELGLT 575 (695)
Q Consensus 549 ~~~~L~~~~~~~g~~~~A~~~l~~~~~ 575 (695)
.+..++.++...|++++|.+.++++++
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999987899999999999999
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.19 E-value=1.3e-09 Score=74.55 Aligned_cols=64 Identities=8% Similarity=-0.060 Sum_probs=23.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCH-HHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 9999972997699999998044999989-9889999999932997-9999999999970988458999
Q 005474 453 IQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVK 518 (695)
Q Consensus 453 i~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~ 518 (695)
...+...|+.++|+..+.+..+. .|+ ...+..+..++...|. ++|.+.++.+.+++|....+++
T Consensus 249 ~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 249 VEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999986699999999988762--9137999999999998789999999999999987966399999
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.19 E-value=2.1e-09 Score=73.17 Aligned_cols=39 Identities=3% Similarity=-0.060 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 59999999999994748999999999999999999739989
Q 005474 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428 (695)
Q Consensus 388 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 428 (695)
.+..++|+..++.+.... +-+...|..+...+.+.|+.+
T Consensus 157 ~~~~~~Al~~~~~~i~~~--p~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 157 AVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp CCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHCCHH
T ss_conf 455289999999988718--987999999999999826889
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=6.6e-08 Score=63.61 Aligned_cols=194 Identities=14% Similarity=0.028 Sum_probs=74.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999955999999999999474899999999999999999973998999999999998899889999999999999
Q 005474 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457 (695)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 457 (695)
+..+...|.+.|++++|+..|++..... +.+..+|..+..+|.+.|++++|...|+++.+... .+...+..+..+|.
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCC--CCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf 9999999998799999999999854349--99889996004278887778875234468999876-11115888999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCH-HHHHHHHHHHHHCCCCHHH--HHHHHHHHHCCHHHHHHH
Q ss_conf 7299769999999804499998-99889999999932997-9999999999970988458--999985400001007999
Q 005474 458 KAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY--VVKLLLEEQDIEGDFKKE 533 (695)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~e 533 (695)
..|++++|...|++..+. .| +......+.......+. +....+........+.... ............+ ..+.
T Consensus 117 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 193 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQT-LMER 193 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 876679999999999865--3000788899999998853587899999876403144434557788888877777-8999
Q ss_pred HHHHHHHC-CCCCC-CCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99988730-23865-3114899999995599889999999998758
Q 005474 534 ATELFNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 534 A~~l~~~~-~~~~~-~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
+...+... ...++ ...|..++..+...|++++|...+++++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 9999998664084509999999999998789999999999999839
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=6.5e-08 Score=63.68 Aligned_cols=25 Identities=12% Similarity=-0.075 Sum_probs=11.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999997299769999999804
Q 005474 449 LTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 449 ~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
|..+...|...|++++|+..|++..
T Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~al 236 (259)
T d1xnfa_ 212 NFYLGKYYLSLGDLDSATALFKLAV 236 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999998789999999999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=5.2e-06 Score=51.55 Aligned_cols=18 Identities=17% Similarity=-0.016 Sum_probs=7.4
Q ss_pred HHHCCCHHHHHHHHHHHH
Q ss_conf 997299769999999804
Q 005474 456 YGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 456 ~~~~g~~~~A~~~~~~m~ 473 (695)
+...|+++.|...+++..
T Consensus 209 ~l~~~d~~~A~~~~~~~~ 226 (290)
T d1qqea_ 209 QLAATDAVAAARTLQEGQ 226 (290)
T ss_dssp HHHTTCHHHHHHHHHGGG
T ss_pred HHHHCCHHHHHHHHHHHH
T ss_conf 998465999999999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=5e-06 Score=51.65 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC----C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-C---CHHH
Q ss_conf 99999999955999999999999474899999----9-999999999999739989999999999988998-8---9999
Q 005474 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQP----D-SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-P---NLFV 448 (695)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p----~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p---~~~~ 448 (695)
+..+...+...|++++|...++++.......+ . ...+...+..+...|+.+.|...+++..+.... + ....
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~ 240 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 89999999981739999999999998681332455569999999999999846599999999999975977444399999
Q ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHH
Q ss_conf 9999999997--299769999999804
Q 005474 449 LTSLIQCYGK--AQRTDDVVRALNRLP 473 (695)
Q Consensus 449 ~~~li~~~~~--~g~~~~A~~~~~~m~ 473 (695)
...++.++.. .+.+++|+..|+++.
T Consensus 241 l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 241 LKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 999999998368999999999998875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2e-05 Score=47.80 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=36.2
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99559999999999994748999999999999999999739989999999999988998899999999999997299769
Q 005474 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464 (695)
Q Consensus 385 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 464 (695)
+...|+++.|++.|..+. .++..++..+...|...|++++|.+.|++.++.. +.+...|..+..+|.+.|++++
T Consensus 15 ~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHH
T ss_conf 998779999999998648-----9889999999999998589146787899999985-5234667889999985424999
Q ss_pred HHHHHHHHH
Q ss_conf 999999804
Q 005474 465 VVRALNRLP 473 (695)
Q Consensus 465 A~~~~~~m~ 473 (695)
|+..|++..
T Consensus 89 A~~~~~kAl 97 (192)
T d1hh8a_ 89 AIKDLKEAL 97 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=0.0001 Score=43.24 Aligned_cols=91 Identities=4% Similarity=-0.068 Sum_probs=47.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999559999999999994748999999999999999999739989999999999988998899999999999997299
Q 005474 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461 (695)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 461 (695)
...|.+.|++++|+..|++..+.. +.+...|..+...|...|++++|...|+...+.. +.+...|..+..++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
T ss_conf 999999589999999866021100--0113332456788874054212888899999875-4466877999999999499
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 76999999980449
Q 005474 462 TDDVVRALNRLPEL 475 (695)
Q Consensus 462 ~~~A~~~~~~m~~~ 475 (695)
+++|+..+++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999989999872
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.22 E-value=3.7e-05 Score=46.11 Aligned_cols=85 Identities=14% Similarity=0.005 Sum_probs=28.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCC
Q ss_conf 99995599999999999947489999999999999999997399899999999999889988-99999999999997299
Q 005474 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQR 461 (695)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 461 (695)
..+.+.|++++|+..|....... +.+...|..+..+|.+.|++++|...|+...+. .| +...|..+..+|...|+
T Consensus 12 n~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~lg~~~~~l~~ 87 (201)
T d2c2la1 12 NRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEMES 87 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
T ss_conf 99998699999999999999859--998999981789874100000124788888871--88738999999999998799
Q ss_pred HHHHHHHHHH
Q ss_conf 7699999998
Q 005474 462 TDDVVRALNR 471 (695)
Q Consensus 462 ~~~A~~~~~~ 471 (695)
+++|+..|++
T Consensus 88 ~~~A~~~~~~ 97 (201)
T d2c2la1 88 YDEAIANLQR 97 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.20 E-value=6.9e-05 Score=44.38 Aligned_cols=96 Identities=7% Similarity=-0.090 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 99999999999817996899999999998699999999999999999559999999999994748999999999999999
Q 005474 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419 (695)
Q Consensus 340 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 419 (695)
...+......|.+.|++++|+..|.+..+.... +...|..+..+|.+.|++++|+..|+...+.. +-+...|..+..
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~lg~ 80 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQ 80 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH
T ss_conf 999999999999869999999999999985999-89999817898741000001247888888718--873899999999
Q ss_pred HHHHCCCHHHHHHHHHHHH
Q ss_conf 9997399899999999999
Q 005474 420 ICSCRGKVSEAEAMFNEML 438 (695)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~ 438 (695)
+|...|++++|...|++..
T Consensus 81 ~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
T ss_conf 9998799999999999998
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=0.00019 Score=41.62 Aligned_cols=26 Identities=8% Similarity=-0.049 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999997299769999999804
Q 005474 448 VLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
.|..+..+|...|++++|+..|+++.
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~kal 71 (159)
T d1a17a_ 46 YYGNRSLAYLRTECYGYALGDATRAI 71 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 32456788874054212888899999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=0.00014 Score=42.38 Aligned_cols=87 Identities=10% Similarity=0.044 Sum_probs=35.3
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99955999999999999474899999999999999999973998999999999998899889999999999999729976
Q 005474 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463 (695)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 463 (695)
.+.+.|++++|+..|.+..+.. +.+...|..+..+|...|++++|...+....+.. +.+...|..+..++...|+++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCC--CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCHH
T ss_conf 9999699999999999988619--9601343000110110000112100134677740-220267788999999812799
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999804
Q 005474 464 DVVRALNRLP 473 (695)
Q Consensus 464 ~A~~~~~~m~ 473 (695)
+|+..|++..
T Consensus 89 ~A~~~~~~a~ 98 (117)
T d1elwa_ 89 EAKRTYEEGL 98 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=7.6e-06 Score=50.51 Aligned_cols=109 Identities=10% Similarity=-0.043 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999984599779999999996399998999999999999981994799999999998699988776999999998
Q 005474 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316 (695)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 316 (695)
.+..+...+.+.|+.+.|...++...... ...++..+...+...|++++|...|++..+... -+...|+.+...+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
T ss_conf 99985799875899999999999882788---999999999999980247899999999998789-96599999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 2499579999999999889999999999999999
Q 005474 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350 (695)
Q Consensus 317 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 350 (695)
..|+..+|...|.+..... +|-...+..|...+
T Consensus 198 ~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
T ss_conf 8699999999999998179-99789999999999
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=2.6e-05 Score=47.11 Aligned_cols=133 Identities=11% Similarity=-0.083 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99779999999996399998999999999999981994799999999998699988776999999998249957999999
Q 005474 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328 (695)
Q Consensus 249 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 328 (695)
+.++.++..++...... +.+...+..+...+.+.|+.++|...++...... ....+..+...+...+++++|...|
T Consensus 100 ~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999987899-1139999985799875899999999999882788---9999999999999802478999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99998899999999999999998179968999999999986999999999999999995
Q 005474 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387 (695)
Q Consensus 329 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 387 (695)
.+..+.. +.+...|+.+...+...|+..+|...|.+...... |....+..|...+.+
T Consensus 176 ~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 176 RHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_conf 9999878-99659999999999986999999999999981799-978999999999987
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=0.0002 Score=41.39 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=8.6
Q ss_pred HHHCCCH-HHHHHHHHHHHHCCCCHH
Q ss_conf 9932997-999999999997098845
Q 005474 490 VMTQTPK-EELGKLVECVEKSNSKLG 514 (695)
Q Consensus 490 ~~~~~~~-~~a~~~~~~~~~~~p~~~ 514 (695)
++...|+ ++|.+.++.+..++|++.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~ 106 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNN 106 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99997316999999999997690989
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.66 E-value=0.00062 Score=38.31 Aligned_cols=93 Identities=9% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999817996899999999998699999999999999999559999999999994748999999999999999999
Q 005474 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422 (695)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 422 (695)
...+...+.+.|++++|...|++....... +...|..+..++...|++++|+..++...+.. +.+...+..+...|.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCHHHHHHHHH
T ss_conf 999999999876058999988610112111-10012335456410125877410000011111--100000378999999
Q ss_pred HCCCHHHHHHHHHHHH
Q ss_conf 7399899999999999
Q 005474 423 CRGKVSEAEAMFNEML 438 (695)
Q Consensus 423 ~~g~~~~A~~~~~~m~ 438 (695)
..|+.++|.+.+++.+
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
T ss_conf 9789999999999981
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.0015 Score=35.80 Aligned_cols=131 Identities=16% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH--------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 999999999998179968999999999986999999--------------999999999995599999999999947489
Q 005474 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV--------------TLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405 (695)
Q Consensus 340 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 405 (695)
...+......+.+.|++++|...|.+..+....... ..|+.+..+|.+.|++++|+..++......
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC
T ss_conf 99999999999996999999999999988751010003577764064679999999999886421101100000001002
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHH-----HHHHHH
Q ss_conf 999999999999999997399899999999999889988-999999999999972997699999-----998044
Q 005474 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRA-----LNRLPE 474 (695)
Q Consensus 406 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~-----~~~m~~ 474 (695)
+.+...+..+..+|...|++++|...|+...+ +.| +......+.....+.+.......- |+.+.+
T Consensus 93 --p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~ 163 (170)
T d1p5qa1 93 --SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE 163 (170)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf --23103467779999872229999999999997--298989999999999999999999999999999998752
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.52 E-value=0.00023 Score=41.01 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=14.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 999999559988999999999875
Q 005474 553 LIDLCVNLNLLENACKLLELGLTL 576 (695)
Q Consensus 553 L~~~~~~~g~~~~A~~~l~~~~~~ 576 (695)
.+..+...|+.++|.+.++++.+.
T Consensus 105 ~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 105 SFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999679989999999999833
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.52 E-value=0.0018 Score=35.35 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=7.0
Q ss_pred HHHHCCCHHHHHHHHHHHHH
Q ss_conf 99845997799999999963
Q 005474 244 AYGRAGNVEMAFGLYDRARN 263 (695)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~ 263 (695)
.+.+.+++++|++.|++..+
T Consensus 11 ~~~~~~d~~~A~~~~~kAa~ 30 (265)
T d1ouva_ 11 KSYKEKDFTQAKKYFEKACD 30 (265)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
T ss_conf 99987799999999999997
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.51 E-value=0.0019 Score=35.24 Aligned_cols=48 Identities=17% Similarity=0.350 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999999999999819947999999999986999887769999999982
Q 005474 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317 (695)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 317 (695)
+......++..|-..|.+++...+++..... -..+...++.++..|++
T Consensus 98 ~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 98 HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 145 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH
T ss_conf 7887899999998769859999999999757-74446799999999998
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.40 E-value=0.0003 Score=40.30 Aligned_cols=129 Identities=17% Similarity=0.193 Sum_probs=77.5
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHH
Q ss_conf 995599999999999947489999999999999999997399899999999999889988-9999999999999729976
Q 005474 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTD 463 (695)
Q Consensus 385 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 463 (695)
..+.|++++|+..+++..+.. +.+...+..+...++..|++++|.+.++...+. .| +...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCCH
T ss_conf 988889999999999999978--999999999999999879999999999999986--9973899999999998346637
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCH-HHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99999998044999989-9889999999932997-9999999999970988458999
Q 005474 464 DVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVK 518 (695)
Q Consensus 464 ~A~~~~~~m~~~g~~pd-~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~ 518 (695)
++..........+ .|+ ..........+...|+ ++|...++.+....|+.+...+
T Consensus 82 ~a~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 82 DFAQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHTTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 8998754442035-8647999999999999679989999999999833999981001
|
| >d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: SMR domain-like family: Smr domain domain: Nedd4-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=0.00077 Score=37.74 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=60.8
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC-HHHHHHHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 20035578678999999999999999961999998069983103455651-23999999985332999866899953187
Q 005474 591 SLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD-KGLASVFESHLKELNAPFHDSPDKVGWFL 669 (695)
Q Consensus 591 ~~~l~~~s~G~~~~a~~~w~~~~~~~~~~g~~~p~~~~i~~g~~~~~~~~-~~~~~~i~~~l~~~~~pf~~~~~~~g~~~ 669 (695)
.+|||++.+..|..++..++......... ..-...+.|+||.|.||... ..++.+|...|.+-+-.|. ..|.|+|+
T Consensus 3 ~iDLHG~~~~eA~~~l~~~l~~~~~~~~~-~~~~~~l~IItG~G~hS~~g~~~lk~~V~~~L~~~~~~~~--e~~~G~~~ 79 (83)
T d2d9ia1 3 VLDLHGLHVDEALEHLMRVLEKKTEEFKQ-NGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFS--EIKPGCLK 79 (83)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHH-TTCCSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEE--CCSTTCEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEE--CCCCCEEE
T ss_conf 08779998999999999999999985554-0795079999798777899964279999999997797513--18992799
Q ss_pred EE
Q ss_conf 71
Q 005474 670 TT 671 (695)
Q Consensus 670 ~~ 671 (695)
..
T Consensus 80 V~ 81 (83)
T d2d9ia1 80 VM 81 (83)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.35 E-value=0.0029 Score=34.04 Aligned_cols=105 Identities=14% Similarity=0.076 Sum_probs=48.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999944998899999999998699979887999999999769915999999864129999999999999999984
Q 005474 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247 (695)
Q Consensus 168 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 247 (695)
|..++..+.+.+++..|.+++.... +..+|..+...+.+......+. +.......+......++..|-.
T Consensus 43 ~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~ 111 (336)
T d1b89a_ 43 FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQD 111 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHCC------CHHHHHHHHHHHHHCCHHHHHH-----HHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9999999970315999999998808------8999999999997272878999-----9998753578878999999987
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 5997799999999963999989999999999999819
Q 005474 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284 (695)
Q Consensus 248 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 284 (695)
.|.+++...+++...... ..+...++.++..|++.+
T Consensus 112 ~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 112 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHC
T ss_conf 698599999999997577-444679999999999869
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.29 E-value=0.0034 Score=33.61 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=4.6
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 49988999999999
Q 005474 178 CRDLDKAERLFDDM 191 (695)
Q Consensus 178 ~g~~~~A~~l~~~m 191 (695)
.+++++|.+.|+..
T Consensus 15 ~~d~~~A~~~~~kA 28 (265)
T d1ouva_ 15 EKDFTQAKKYFEKA 28 (265)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
T ss_conf 77999999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.0038 Score=33.28 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH------HHH
Q ss_conf 99999999999845997799999999963999989999999999999819947999999999986999887------769
Q 005474 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM------ITY 308 (695)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~ 308 (695)
..-+..+...+.+.|++++|+..|.+.++.+ +.+..++..+..+|.+.|++++|+..++++.+....... .+|
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~ 82 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8999999999998599999999999998849-645899986889998818607789999999986801278898899999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999998249957999999999988999999999999999
Q 005474 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349 (695)
Q Consensus 309 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 349 (695)
..+...+...+++++|...|+.... ..++......+-.+
T Consensus 83 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l~~~ 121 (128)
T d1elra_ 83 ARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQA 121 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH--CCCCHHHHHHHHHH
T ss_conf 9999999993889999999999984--59999999999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.23 E-value=0.004 Score=33.20 Aligned_cols=125 Identities=7% Similarity=-0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 77699999999824995799999999998---------------899999999999999998179968999999999986
Q 005474 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTD---------------NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369 (695)
Q Consensus 305 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (695)
...+......+...|++.+|...|.++.+ .--+.....+..+..+|.+.|++++|+..++...+.
T Consensus 27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 106 (169)
T d1ihga1 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 106 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999990889999999999987411116666557787719023999998999998640210136665544310
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 999999999999999995599999999999947489999999999999999997399899999
Q 005474 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432 (695)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 432 (695)
... +...|..+..++...|++++|+..|+...+.. +.+......+.....+.....+..+
T Consensus 107 ~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--p~n~~~~~~l~~~~~~l~~~~~~~k 166 (169)
T d1ihga1 107 DPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDKEK 166 (169)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 002-23677769999998047999999999999859--8999999999999999998999998
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.22 E-value=0.0041 Score=33.10 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=6.1
Q ss_pred HHHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999972997699999
Q 005474 449 LTSLIQCYGKAQRTDDVVRA 468 (695)
Q Consensus 449 ~~~li~~~~~~g~~~~A~~~ 468 (695)
|..++.+|...|+..+|+..
T Consensus 104 ~~~l~~al~~~Gr~~eAl~~ 123 (179)
T d2ff4a2 104 WTQLITAYYLSDRQSDALGA 123 (179)
T ss_dssp HHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHH
T ss_conf 99999999985579999999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.00 E-value=0.0067 Score=31.76 Aligned_cols=132 Identities=8% Similarity=-0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 77699999999824995799999999998--------------8999999999999999981799689999999999869
Q 005474 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTD--------------NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370 (695)
Q Consensus 305 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 370 (695)
...+......+.+.|++.+|...|..... .........|..+..+|.+.|++++|+..++...+..
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 99999999999995999999999999999998750012455531064679999849999877622011000223222013
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHH
Q ss_conf 99999999999999995599999999999947489999999999999999997399899-9999999998
Q 005474 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE-AEAMFNEMLE 439 (695)
Q Consensus 371 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 439 (695)
.. +...|..+..++...|++++|...|..+.... +.+......+-....+.+...+ ..+++..|.+
T Consensus 95 p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 95 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10-48899988999988278999999999999859--898999999999999998699999999999986
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.90 E-value=0.0081 Score=31.23 Aligned_cols=115 Identities=8% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999999817996899999999998699999---------------999999999999559999999999994748
Q 005474 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS---------------VTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404 (695)
Q Consensus 340 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 404 (695)
...+......+.+.|++.+|...|.+..+.-.... ..+|..+..+|.+.|++++|+..+......
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~ 96 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 96 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 99999999999995999999999998776073001110577887631078899961999999846530111010001000
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999999999999999739989999999999988998899999999999997
Q 005474 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458 (695)
Q Consensus 405 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 458 (695)
. +.+...|..+..++...|++++|...|+...+ +.|+.......+..+.+
T Consensus 97 ~--p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 97 D--KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELCVN 146 (153)
T ss_dssp S--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH
T ss_conf 0--00012467768999996899999999999998--29898999999999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.86 E-value=0.0064 Score=31.88 Aligned_cols=23 Identities=13% Similarity=-0.223 Sum_probs=7.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999999970988458999985
Q 005474 499 LGKLVECVEKSNSKLGYVVKLLL 521 (695)
Q Consensus 499 a~~~~~~~~~~~p~~~~~~~~l~ 521 (695)
|...++++.+++|++...+..+|
T Consensus 60 Ai~~~~kAl~l~P~~~~a~~~lG 82 (145)
T d1zu2a1 60 AITKFEEALLIDPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999998873012058776689
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.85 E-value=0.0088 Score=30.99 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=4.3
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 4998899999999
Q 005474 178 CRDLDKAERLFDD 190 (695)
Q Consensus 178 ~g~~~~A~~l~~~ 190 (695)
.|++++|.+.|..
T Consensus 24 ~g~~e~A~~~~~~ 36 (179)
T d2ff4a2 24 AGRFEQASRHLSA 36 (179)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 8799999999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.80 E-value=0.0082 Score=31.18 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999997098845899998
Q 005474 498 ELGKLVECVEKSNSKLGYVVKLL 520 (695)
Q Consensus 498 ~a~~~~~~~~~~~p~~~~~~~~l 520 (695)
+|.+.|+....++|++..+...|
T Consensus 104 ~A~~~~~kal~l~P~~~~~~~~L 126 (145)
T d1zu2a1 104 LATQFFQQAVDEQPDNTHYLKSL 126 (145)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 76312110002598889999999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=94.60 E-value=0.08 Score=24.88 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHH--HHHHHHCCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--
Q ss_conf 9999999--9999845997799999999963999989-----------999999999999819947999999999986--
Q 005474 235 ALTYSSM--IDAYGRAGNVEMAFGLYDRARNEKWRID-----------PNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-- 299 (695)
Q Consensus 235 ~~~~~~l--i~~~~~~g~~~~A~~~~~~~~~~g~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 299 (695)
...|..+ ...+...|++++|+..|++.++..-... ...|+.+..+|...|++++|...+++....
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 99999999999999859999999999999986844201020012102799999999999982863001576643553043
Q ss_pred ---CCCCCHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf ---9998877-----699999999824995799999999998
Q 005474 300 ---GVKPNMI-----TYNNLLDTMGRAKRPWQVKTIYKEMTD 333 (695)
Q Consensus 300 ---g~~p~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~ 333 (695)
...++.. .+..+..+|...|++++|...|++..+
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 100245544311278775269999988888888999999998
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=88.01 E-value=0.44 Score=20.14 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=32.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999955999999999999474899999999999999999973998999999999998899
Q 005474 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442 (695)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 442 (695)
.+..+..+.+.|+-+...++++.+.+.+ ++++.....+..+|.+.|...++.+++.+..+.|+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~--~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 9999999998260878999999987537--99879999999999885224448999999999759
|