Citrus Sinensis ID: 005510

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690---

MPLRNDDVRFISSPLKIPPFRPEPPVPFFAQTLTKSKNSLSHLIYSLNESTRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGGFLYDWPHVSYAFKVCSLPPPPRLQPYFVYLFCFIR

ccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEccccccEEEEEEEEEccccHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHcccEEEEEEEEEEccccEEEEEEEccccEEEEEEEEEcccccHHHHHHHcccccccEEcHHHHHHHHHHHHHHHHHcccEEEEccEEcccccEEEEEEEEEEEccEEEEEEEccccccccccccccEEEEcccccccccccHHHHHHHHHHHHcccccccEEEEEEcccccccEEEEEEEEEccccEEEEEEEEcccccccccccEEEEEEEEEccccccccEEEEEEEEccEEEEEEEEEEEccccccccccEEEEEEEEEccccccccccccccccEEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEccccccEEEccccccccccccccccEEEEEEEEEEcccccccccEEEEEEEEEEEccccccEEEEEEEEEEEEEEEcccEEEEEEEEEEEEccccccccEEccccccccccccccccccEEEEEEEEEEEEEccccEEEEEEEEEEcccccccccccccccccccEEEEEEEEEccccEEEEEEEEcccEEcc

cccccccEEEEEcccccccccccccccHHHHHHHcccccHHHHccccccccccccccHHHHHHHHHcccccccEEcccEEccccHHHcHHcHHHHHHHHHHHHHHccccccEEEEEEcccccccEEEEEEcccccEEEEEEEEEEccccccHHHHHHHHcccccHHcccccccccHHHHHHHHHHHHHccccccEEEEcccccccEEEEEEEccccEEEEEEEEccccccHHHHHHHHHcccccEccHHHHHHHHHHHHHHHHHcccEEEEEccccccccEEEEEEEEccccEEEEEEEEccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccEEEEEccccccccEEEEEEEEEEccccEEEEEEEEcccccccccccEEEEEEEEEccccccccEEEEEEEEccEEEEEEEEEccccEccccccccEEEEEEEccccccccccccccccccEEEEEcccEEEEEEcccccEEEEEEEEEEEEEEcccccccccccccccccccccccccEEEEEEccccccccccccEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEccccEEEEEEEcccccccccccHHEEccccccEccccccccccccEEEEEEEEEEEcccccEEEEEEEEccccccccccccccEEcccccccccEEEcccccccccccEEEEEEEEcc

mplrnddvrfissplkippfrpeppvpffaQTLTKSKNSLSHLIYSlnestrstepFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLslnqssaefpaqselsTQLQqkaqqphsvsrsdeERVLISEVLVrnkdgeelerkDLETEALTALKACRANSALTVREVQEDVHRIIDsgyfcscmpvavdtrdGIRLVfqvepnqefhglvceganvlptkfvedafrdgygkvvNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRfldrktgeptkgktrpeTILRQLTTKKGQVYSMLQGKRDVETVLTMGImedvsiipqpagdtgkvdLIMNVverpsggfsagggissgitsgplsglIGSFAYshrnvfgrnqKLNIslergqidsifrinytdpwiegddkrtsrtimvqnsrtpgthvhgnqpdnssltigrvtagmefsrpirpkwsgtvglifqhsgardekgnpiikdfysspltasgktnDEMLIAKFEsvytgsgdqgsSMFVFNMeqglpvwpewlffnRVNARARKGVEIGPARLLLSLsgghvvgnfspheafaiggtnsvrgyeegavgsgrsyvvgsgeisfpmlgpveGVIFsdygtdlgsgpsvpggflydwphvsyafkvcslpppprlqpyFVYLFCFIR

mplrnddvrfissplkippfrpePPVPFFAQTLTKSKNSLSHLIYSLnestrstepFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKaqqphsvsrsdeervlisevlvrnkdgeelerkdlETEALTALkacransaltvreVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAfrdgygkvvnirrlDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAevnnisirfldrktgeptkgktrpetilrqlttkkgqvysmlqgKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRinytdpwiegddkrtsRTIMVQnsrtpgthvhgnqpdnssLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHsgardekgnpiIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGGFLYDWPHVSYAFKVCSLPPPPRLQPYFVYLFCFIR

MPLRNDDVRFISSPLKIppfrpeppvpffAQTLTKSKNSLSHLIYSLNESTRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPsggfsagggissgitsgplsgligsFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARlllslsggHVVGNFSPHEAFAIGGTNSVRGYEEgavgsgrsyvvgsgEISFPMLGPVEGVIFSDYGTDLGSGPSVPGGFLYDWPHVSYAFKVCSLPPPPRLQPYFVYLFCFIR

****************************F***********SHLIYSL**********TRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASL************************************************************ALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLD****************LRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVV***********************GLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEG********************************IGRVTAGMEFSRPIRPKWSGTVGLIFQHSG*******PIIKDFYS***********EMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGGFLYDWPHVSYAFKVCSLPPPPRLQPYFVYLFCFI*

*********************************************************************************************************************************SRSDEERVLISEVLVRNKDGEELE*KDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGGFLYDWPHVSYAFKVCSLPPPPRLQPYFVYLFCFIR

MPLRNDDVRFISSPLKIPPFRPEPPVPFFAQTLTKSKNSLSHLIYSLNESTRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQ******************************ERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGGFLYDWPHVSYAFKVCSLPPPPRLQPYFVYLFCFIR

**L*NDDVRFISSPLKIPPFRPEPPVPFFAQTLTKSKNSLSHLIYSLNESTRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGGFLYDWPHVSYAFKVCSLPPPPRLQPYFVYLFCFIR

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		693	2.2.26 [Sep-21-2011]
Q9C5J8		732	Outer envelope protein 80	yes	no	0.940	0.890	0.736	0.0
Q6H7M7		665	Outer envelope protein 80	yes	no	0.773	0.806	0.772	0.0
A2X208		665	Outer envelope protein 80	N/A	no	0.773	0.806	0.772	0.0
Q43715		809	Protein TOC75, chloroplas	N/A	no	0.675	0.578	0.248	5e-24
Q84Q83		817	Protein TOC75, chloroplas	no	no	0.585	0.496	0.244	6e-20
Q9STE8		818	Protein TOC75-3, chloropl	no	no	0.665	0.563	0.241	2e-19
P0C891		158	Outer envelope protein 80	N/A	no	0.170	0.746	0.328	2e-17
Q5IZC8		396	Protein TOC75-4, chloropl	no	no	0.158	0.277	0.322	1e-06
Q9K1H0		797	Outer membrane protein as	yes	no	0.438	0.381	0.237	2e-05

>sp\|Q9C5J8\|OEP80_ARATH Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1	Back alignment and function desciption

 Score = 1000 bits (2586), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/687 (73%), Positives = 564/687 (82%), Gaps = 35/687 (5%)

Query: 1   MPLRNDDVRFISSPLKIPPFRPEPPVPF----------FAQTLTKSKNSLSHLIYSLNE- 49
           M   NDDVRF SS ++I    P+               F   L+ ++NSL+ ++ SL   
Sbjct: 1   MHCHNDDVRFSSSSIRIHSPSPKEQHSLLTNLQSCSKTFVSHLSNTRNSLNQMLQSLKNR 60

Query: 50  ------STRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTG---------AVDTL--VNF 92
                 S R     T+ L S  + + GKS  I  + +  T           V+T+  ++ 
Sbjct: 61  HTPPPRSVRRPNLPTQMLNSVTQLMIGKSSPISLSLIQSTQFNWSESRDENVETIRGLSS 120

Query: 93  PLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQP--HSVSRSDEERVLISEVLVRNKDGE 150
           PLLC ASLSL +     P +S  S + +   QQ   HSVSR+ EERVLISEVLVR KDGE
Sbjct: 121 PLLCCASLSLTR-----PNESTQSVEGKDTVQQQKGHSVSRNAEERVLISEVLVRTKDGE 175

Query: 151 ELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVF 210
           ELERKDLE EAL ALKACRANSALT+REVQEDVHRII+SGYFCSC PVAVDTRDGIRL+F
Sbjct: 176 ELERKDLEMEALAALKACRANSALTIREVQEDVHRIIESGYFCSCTPVAVDTRDGIRLMF 235

Query: 211 QVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGM 270
           QVEPNQEF GLVCE ANVLP+KF+ +AFRDG+GKV+NI+RL+E ITSINGWYMERGLFG+
Sbjct: 236 QVEPNQEFRGLVCENANVLPSKFIHEAFRDGFGKVINIKRLEEAITSINGWYMERGLFGI 295

Query: 271 VSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSM 330
           VS ++ LSGGI+RLQVAEAEVNNISIRFLDRKTGEPTKGKT PETILRQLTTKKGQVYSM
Sbjct: 296 VSDIDTLSGGIVRLQVAEAEVNNISIRFLDRKTGEPTKGKTSPETILRQLTTKKGQVYSM 355

Query: 331 LQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGP 390
           LQGKRDV+TVL MGIMEDVSIIPQPAGD+GKVDLIMN VERPSGGFSAGGGISSGITSGP
Sbjct: 356 LQGKRDVDTVLAMGIMEDVSIIPQPAGDSGKVDLIMNCVERPSGGFSAGGGISSGITSGP 415

Query: 391 LSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNS 450
           LSGLIGSFAYSHRN+FGRNQKLN+SLERGQIDSIFRINYTDPWIEGDDKRTSR+IMVQNS
Sbjct: 416 LSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDPWIEGDDKRTSRSIMVQNS 475

Query: 451 RTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKD 510
           RTPG  VHGNQPDNSSLTIGRVTAG+E+SRP RPKW+GT GLIFQH+GARDE+GNPIIKD
Sbjct: 476 RTPGNLVHGNQPDNSSLTIGRVTAGVEYSRPFRPKWNGTAGLIFQHAGARDEQGNPIIKD 535

Query: 511 FYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARA 570
           FYSSPLTASGK +DE ++AK ES+YTGSGDQGS+MF FNMEQGLPV PEWL FNRV  RA
Sbjct: 536 FYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGLPVLPEWLCFNRVTGRA 595

Query: 571 RKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEIS 630
           RKG+ IGPAR L SLSGGHVVG FSPHEAF IGGTNSVRGYEEGAVGSGRSYVVGSGE+S
Sbjct: 596 RKGIHIGPARFLFSLSGGHVVGKFSPHEAFVIGGTNSVRGYEEGAVGSGRSYVVGSGELS 655

Query: 631 FPMLGPVEGVIFSDYGTDLGSGPSVPG 657
           FP+ GPVEGVIF+DYGTD+GSG +VPG
Sbjct: 656 FPVRGPVEGVIFTDYGTDMGSGSTVPG 682

Plays an essential role during early stages of plastid development.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q6H7M7\|OEP80_ORYSJ Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. japonica GN=OEP80 PE=3 SV=2	Back alignment and function description

>sp\|A2X208\|OEP80_ORYSI Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. indica GN=OEP80 PE=3 SV=1	Back alignment and function description

>sp\|Q43715\|TOC75_PEA Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1	Back alignment and function description

>sp\|Q84Q83\|TOC75_ORYSJ Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica GN=TOC75 PE=2 SV=2	Back alignment and function description

>sp\|Q9STE8\|TC753_ARATH Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3 PE=1 SV=1	Back alignment and function description

>sp\|P0C891\|OEP80_PEA Outer envelope protein 80, chloroplastic (Fragments) OS=Pisum sativum GN=OEP80 PE=1 SV=1	Back alignment and function description

>sp\|Q5IZC8\|TC754_ARATH Protein TOC75-4, chloroplastic OS=Arabidopsis thaliana GN=TOC75-4 PE=2 SV=1	Back alignment and function description

>sp\|Q9K1H0\|BAMA_NEIMB Outer membrane protein assembly factor BamA OS=Neisseria meningitidis serogroup B (strain MC58) GN=bamA PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		693
255544822		700	sorting and assembly machinery (sam50) p	0.930	0.921	0.799	0.0
297808025		732	hypothetical protein ARALYDRAFT_909999 [	0.933	0.883	0.747	0.0
18419973		732	outer envelope protein [Arabidopsis thal	0.940	0.890	0.736	0.0
356547291		677	PREDICTED: outer envelope protein of 80	0.900	0.921	0.747	0.0
356557629		677	PREDICTED: outer envelope protein of 80	0.897	0.918	0.748	0.0
224075788		682	predicted protein [Populus trichocarpa]	0.870	0.884	0.748	0.0
359478392		673	PREDICTED: outer envelope protein of 80	0.887	0.913	0.760	0.0
357454321		672	Outer envelope protein of 80 kDa [Medica	0.891	0.919	0.741	0.0
449502616		757	PREDICTED: LOW QUALITY PROTEIN: outer en	0.803	0.735	0.782	0.0
449448734		757	PREDICTED: outer envelope protein 80, ch	0.803	0.735	0.782	0.0

>gi\|255544822\|ref\|XP_002513472.1\| sorting and assembly machinery (sam50) protein, putative [Ricinus communis] gi\|223547380\|gb\|EEF48875.1\| sorting and assembly machinery (sam50) protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1027 bits (2656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/662 (79%), Positives = 571/662 (86%), Gaps = 17/662 (2%)

Query: 1   MPLRNDDVRFISSPLKIPPFRPEPPVPFFAQTLTKSKNSLSHLIYSLNESTRSTEPFTRK 60
           MP +ND VRF SS LKIP   P       A  L+ +K S ++ I SL   TRS    +R 
Sbjct: 1   MP-QNDTVRFTSSSLKIPLLPPPQQQ-QQAPQLSYTKISFTNFIDSL--ITRSKIHISRS 56

Query: 61  LQSFAEHLYGKSVRICSTCLSMTGAVDTLVN-----FPLLCSASLSLNQSSAEFPAQSEL 115
           + S  +        +C   LS+  + DT+++      P+LCSASLSL Q     P +SE 
Sbjct: 57  VNSPRKLTL---PLLCFASLSLPQSKDTVISESHTQSPILCSASLSLTQ-----PGESEN 108

Query: 116 STQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALT 175
               Q+ +    S SR DEERVLISEVLVRNKDGEELERKDLE EA+ ALKACRANSALT
Sbjct: 109 IVTQQKGSGGGLSGSRHDEERVLISEVLVRNKDGEELERKDLEAEAVAALKACRANSALT 168

Query: 176 VREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVE 235
           VREVQEDVHRIIDSGYFCSC PVAVDTRDGIRLVFQVEPNQEFHGLVCEGA+VLPTKF++
Sbjct: 169 VREVQEDVHRIIDSGYFCSCTPVAVDTRDGIRLVFQVEPNQEFHGLVCEGASVLPTKFLQ 228

Query: 236 DAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNIS 295
           DAFR+GYGKVVNIR LD+VITSINGWYMERGLFG+VSGVEILSGGI+RLQVAEAEVNNIS
Sbjct: 229 DAFREGYGKVVNIRHLDDVITSINGWYMERGLFGLVSGVEILSGGILRLQVAEAEVNNIS 288

Query: 296 IRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQP 355
           IRFLDRKTGEPTKGKT+PETILRQLTTKKGQVYSMLQGKRDV+TVLTMGIMEDVSIIPQP
Sbjct: 289 IRFLDRKTGEPTKGKTKPETILRQLTTKKGQVYSMLQGKRDVDTVLTMGIMEDVSIIPQP 348

Query: 356 AGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNIS 415
           AGDTGKVDL+MNVVERPSGGFSAGGGISSGITSGPLSGLIGSF YSHRNVFGRNQKLNIS
Sbjct: 349 AGDTGKVDLVMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFTYSHRNVFGRNQKLNIS 408

Query: 416 LERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAG 475
           LERGQIDSIFRINYTDPWI+GDDKRTSRTIMVQNSRTPG  VH  QP NSSLTIGRVTAG
Sbjct: 409 LERGQIDSIFRINYTDPWIQGDDKRTSRTIMVQNSRTPGNLVHSYQPGNSSLTIGRVTAG 468

Query: 476 MEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVY 535
           +EFSRP+RPKWSGT GLIFQH+GA DEKGNPIIKD YSSPLTASGKT+D ML+AKFESVY
Sbjct: 469 VEFSRPLRPKWSGTAGLIFQHAGAHDEKGNPIIKDHYSSPLTASGKTHDNMLLAKFESVY 528

Query: 536 TGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFS 595
           TGSGD GSSMFV N+EQGLP+WPEWLFFNRVNARARKGVEIGPA  LLSLSGGHVVGNFS
Sbjct: 529 TGSGDHGSSMFVLNVEQGLPLWPEWLFFNRVNARARKGVEIGPALFLLSLSGGHVVGNFS 588

Query: 596 PHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSV 655
           PHEAFAIGGTNSVRGYEEGAVGS RSY VGSGEISFP++GPVEGV+F+DYGTDLGSGP+V
Sbjct: 589 PHEAFAIGGTNSVRGYEEGAVGSARSYAVGSGEISFPLMGPVEGVLFADYGTDLGSGPTV 648

Query: 656 PG 657
           PG
Sbjct: 649 PG 650

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297808025\|ref\|XP_002871896.1\| hypothetical protein ARALYDRAFT_909999 [Arabidopsis lyrata subsp. lyrata] gi\|297317733\|gb\|EFH48155.1\| hypothetical protein ARALYDRAFT_909999 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|18419973|ref|NP_568378.1| outer envelope protein [Arabidopsis thaliana] gi|75168961|sp|Q9C5J8.1|OEP80_ARATH RecName: Full=Outer envelope protein 80, chloroplastic; AltName: Full=Chloroplastic outer envelope protein of 80 kDa; Short=AtOEP80; AltName: Full=Protein TOC75-V; Short=AtToc75-V gi|13430586|gb|AAK25915.1|AF360205_1 unknown protein [Arabidopsis thaliana] gi|14532858|gb|AAK64111.1| unknown protein [Arabidopsis thaliana] gi|332005348|gb|AED92731.1| outer envelope protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|356547291\|ref\|XP_003542049.1\| PREDICTED: outer envelope protein of 80 kDa, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|356557629\|ref\|XP_003547118.1\| PREDICTED: outer envelope protein of 80 kDa, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|224075788\|ref\|XP_002304768.1\| predicted protein [Populus trichocarpa] gi\|222842200\|gb\|EEE79747.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359478392\|ref\|XP_002285507.2\| PREDICTED: outer envelope protein of 80 kDa, chloroplastic [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357454321\|ref\|XP_003597441.1\| Outer envelope protein of 80 kDa [Medicago truncatula] gi\|355486489\|gb\|AES67692.1\| Outer envelope protein of 80 kDa [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449502616\|ref\|XP_004161694.1\| PREDICTED: LOW QUALITY PROTEIN: outer envelope protein 80, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449448734\|ref\|XP_004142120.1\| PREDICTED: outer envelope protein 80, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		693
TAIR\|locus:2183164		732	OEP80 "outer envelope protein	0.897	0.849	0.701	4.5e-233
TAIR\|locus:2081423		362	AT3G44160 "AT3G44160" [Arabido	0.365	0.698	0.370	8.4e-42
TAIR\|locus:2102767		818	TOC75-III "translocon at the o	0.463	0.392	0.201	2.3e-12
UNIPROTKB\|Q74AT3		765	yaeT "Outer membrane protein a	0.219	0.198	0.230	1.2e-05
TIGR_CMR\|GSU_2268		765	GSU_2268 "outer membrane prote	0.219	0.198	0.230	1.2e-05

TAIR\|locus:2183164 OEP80 "outer envelope protein of 80 kDa" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2248 (796.4 bits), Expect = 4.5e-233, P = 4.5e-233
 Identities = 451/643 (70%), Positives = 505/643 (78%)

Query:    33 LTKSKNSLSHLIYSL-NEST---RSTE-PF--TRKLQSFAEHLYGKSVRICSTCLSMTGA 85
             L+ ++NSL+ ++ SL N  T   RS   P   T+ L S  + + GKS  I  + +  T  
Sbjct:    43 LSNTRNSLNQMLQSLKNRHTPPPRSVRRPNLPTQMLNSVTQLMIGKSSPISLSLIQSTQF 102

Query:    86 ---------VDTL--VNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQPHSVSRSDE 134
                      V+T+  ++ PLLC ASLSL + +    +     T  QQK    HSVSR+ E
Sbjct:   103 NWSESRDENVETIRGLSSPLLCCASLSLTRPNESTQSVEGKDTVQQQKG---HSVSRNAE 159

Query:   135 ERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCS 194
             ERVLISEVLVR KDGEELERKDLE EAL ALKACRANSALT+REVQEDVHRII+SGYFCS
Sbjct:   160 ERVLISEVLVRTKDGEELERKDLEMEALAALKACRANSALTIREVQEDVHRIIESGYFCS 219

Query:   195 CMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEV 254
             C PVAVDTRDGIRL+FQVEPNQEF GLVCE ANVLP+KF+ +AFRDG+GKV+NI+RL+E 
Sbjct:   220 CTPVAVDTRDGIRLMFQVEPNQEFRGLVCENANVLPSKFIHEAFRDGFGKVINIKRLEEA 279

Query:   255 ITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPE 314
             ITSINGWYMERGLFG+VS ++ LSGGI+RLQVAEAEVNNISIRFLDRKTGEPTKGKT PE
Sbjct:   280 ITSINGWYMERGLFGIVSDIDTLSGGIVRLQVAEAEVNNISIRFLDRKTGEPTKGKTSPE 339

Query:   315 TILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPXX 374
             TILRQLTTKKGQVYSMLQGKRDV+TVL MGIMEDVSIIPQPAGD+GKVDLIMN VERP  
Sbjct:   340 TILRQLTTKKGQVYSMLQGKRDVDTVLAMGIMEDVSIIPQPAGDSGKVDLIMNCVERPSG 399

Query:   375 XXXXXXXXXXXXXXXXXXXXXXXFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWI 434
                                    FAYSHRN+FGRNQKLN+SLERGQIDSIFRINYTDPWI
Sbjct:   400 GFSAGGGISSGITSGPLSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDPWI 459

Query:   435 EGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIF 494
             EGDDKRTSR+IMVQNSRTPG  VHGNQPDNSSLTIGRVTAG+E+SRP RPKW+GT GLIF
Sbjct:   460 EGDDKRTSRSIMVQNSRTPGNLVHGNQPDNSSLTIGRVTAGVEYSRPFRPKWNGTAGLIF 519

Query:   495 QHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGL 554
             QH+GARDE+GNPIIKDFYSSPLTASGK +DE ++AK ES+YTGSGDQGS+MF FNMEQGL
Sbjct:   520 QHAGARDEQGNPIIKDFYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGL 579

Query:   555 PVWPEWLFFNRVNARARKGVEIGPARXXXXXXXXHVVGNFSPHEAFAIGGTNSVRGYEEX 614
             PV PEWL FNRV  RARKG+ IGPAR        HVVG FSPHEAF IGGTNSVRGYEE 
Sbjct:   580 PVLPEWLCFNRVTGRARKGIHIGPARFLFSLSGGHVVGKFSPHEAFVIGGTNSVRGYEEG 639

Query:   615 XXXXXXXXXXXXXEISFPMLGPVEGVIFSDYGTDLGSGPSVPG 657
                          E+SFP+ GPVEGVIF+DYGTD+GSG +VPG
Sbjct:   640 AVGSGRSYVVGSGELSFPVRGPVEGVIFTDYGTDMGSGSTVPG 682

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0019867 "outer membrane" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0010207 "photosystem II assembly" evidence=RCA

TAIR\|locus:2081423 AT3G44160 "AT3G44160" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2102767 TOC75-III "translocon at the outer envelope membrane of chloroplasts 75-III" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q74AT3 yaeT "Outer membrane protein assembly factor BamA" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_2268 GSU_2268 "outer membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2X208	OEP80_ORYSI	No assigned EC number	0.7728	0.7734	0.8060	N/A	no
Q6H7M7	OEP80_ORYSJ	No assigned EC number	0.7728	0.7734	0.8060	yes	no
Q9C5J8	OEP80_ARATH	No assigned EC number	0.7365	0.9408	0.8907	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		693
TIGR00992		718	TIGR00992, 3a0901s03IAP75, chloroplast envelope pr	5e-58
COG4775		766	COG4775, COG4775, Outer membrane protein/protectiv	4e-43
pfam01103		317	pfam01103, Bac_surface_Ag, Surface antigen	3e-39
TIGR03303		741	TIGR03303, OM_YaeT, outer membrane protein assembl	4e-25
PLN03138		796	PLN03138, PLN03138, Protein TOC75; Provisional	7e-19
COG0729		594	COG0729, COG0729, Outer membrane protein [Cell env	2e-06
pfam07244		78	pfam07244, Surf_Ag_VNR, Surface antigen variable n	2e-04

>gnl\|CDD\|130065 TIGR00992, 3a0901s03IAP75, chloroplast envelope protein translocase, IAP75 family	Back alignment and domain information

 Score =  208 bits (531), Expect = 5e-58
 Identities = 138/576 (23%), Positives = 225/576 (39%), Gaps = 69/576 (11%)

Query: 138 LISEVLVRNKDGEELERKDLETEALTALKACRANSALTVR-EVQEDVHRIIDSGYFCSCM 196
           L  E+ V    G   E+ D E +          +  L       E V  I D     +  
Sbjct: 109 LQKELEVLATCGM-FEKVDYEGKT-------TQDGRLGTTISFAESVWAIADRFRCINVG 160

Query: 197 PVAVDTRDGIRLVFQVEPNQEFHGL--------VCEGAN-VLPTKFVEDAFRDGYG-KVV 246
            +       + +  +V+   EF           + E    +LP + V++ F   YG  +V
Sbjct: 161 LMPQSKPLEMDVDMEVKEKPEFTRRLEIRYKRRIAEARPCLLPQEVVDETFGMLYGQGIV 220

Query: 247 NIRRLDEVITSINGWYMERGL-FGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGE 305
           + R L E+   +  WY   G     V     L+   +  +V E ++ N+ I+F D K G 
Sbjct: 221 SARLLQEIRDRVQEWYHNEGYACAQVVNFGNLNTDEVVCEVVEGDITNLQIQFFD-KLGN 279

Query: 306 PTKGKTRPETILRQLTT--KKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVD 363
             +G TR   + R+L    K G V+++  GK  ++ + ++G+  ++ + P+P  +  + +
Sbjct: 280 VVEGNTRDPVVTRELPKQLKPGDVFNIEAGKTALQNINSLGLFSNIEVNPRP-DEMNEGE 338

Query: 364 LIMNV----VERPSGGFSAGGGISSGITSGPLS---GLIGSFAYSHRNVFGRNQKLNISL 416
           +I+ +    +E+ S   S    I  G    P        G+  + HRN+ G N+ L  S+
Sbjct: 339 IIVEIKLKELEQKSAEVSTEWSIVPGRGGRPTLASSQPGGTITFEHRNLQGLNRSLGGSV 398

Query: 417 ERG-----QIDSIFRINYTDPWIEGDD--KRTSRTIMVQNSRTPGTHVHGNQPDNS--SL 467
                   Q D +F++ YT P+++G D  +  + T    NSR       G    N   S+
Sbjct: 399 TTSNFLNPQDDLLFKVEYTHPYLDGVDNPRNRTYTASCFNSRKLSPVFTGGPGVNEVPSI 458

Query: 468 TIGRVTAGMEFSRPIR------PKWSGTVGLIFQHS------GARDEKGNPIIKDFYSSP 515
            + R       +                       S      G R     PI       P
Sbjct: 459 WVDRAGVKANITENFARQSKFTYGLVMEEIFTRDESRHINANGQRSLPSGPI--SADGPP 516

Query: 516 LTASGKTNDEMLIAKF----ESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARAR 571
            T SG   D M   +     ++    +G    S   F ++QGL V   + FFNR      
Sbjct: 517 TTLSGTGVDRMAFLQANITRDNTNFVNGPTVGSRVRFQVDQGLGVGSGFPFFNRHQLTYT 576

Query: 572 K-----GVEIG-----PARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRS 621
           K      VE+G     P  L+L    G  VG+   ++AF +GG  SVRGY  G +G+ R+
Sbjct: 577 KFIQLNWVELGAGKSPPPVLVLHGHYGGCVGDLPSYDAFILGGPYSVRGYNMGELGAARN 636

Query: 622 YVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPG 657
               + EI  P+        F ++G+DLGS   V G
Sbjct: 637 IFEATAEIRIPIKATH-VYAFVEHGSDLGSSKDVKG 671

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein [Transport and binding proteins, Amino acids, peptides and amines]. Length = 718

>gnl\|CDD\|227116 COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|216300 pfam01103, Bac_surface_Ag, Surface antigen	Back alignment and domain information

>gnl\|CDD\|234165 TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein	Back alignment and domain information

>gnl\|CDD\|215598 PLN03138, PLN03138, Protein TOC75; Provisional	Back alignment and domain information

>gnl\|CDD\|223801 COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|219346 pfam07244, Surf_Ag_VNR, Surface antigen variable number repeat	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		693
PLN03138		796	Protein TOC75; Provisional	100.0
COG4775		766	Outer membrane protein/protective antigen OMA87 [C	100.0
TIGR00992		718	3a0901s03IAP75 chloroplast envelope protein transl	100.0
PRK11067		803	outer membrane protein assembly factor YaeT; Provi	100.0
TIGR03303		741	OM_YaeT outer membrane protein assembly complex, Y	100.0
COG0729		594	Outer membrane protein [Cell envelope biogenesis,	100.0
COG2831		554	FhaC Hemolysin activation/secretion protein [Intra	100.0
PF01103		323	Bac_surface_Ag: Surface antigen; InterPro: IPR0001	99.96
PF03865		404	ShlB: Haemolysin secretion/activation protein ShlB	99.92
TIGR03303		741	OM_YaeT outer membrane protein assembly complex, Y	99.91
KOG2602		457	consensus Predicted cell surface protein homologou	99.91
PRK11067		803	outer membrane protein assembly factor YaeT; Provi	99.91
COG4775		766	Outer membrane protein/protective antigen OMA87 [C	99.89
PF08479		76	POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013	98.87
PF07244		78	Surf_Ag_VNR: Surface antigen variable number repea	98.81
PF07244		78	Surf_Ag_VNR: Surface antigen variable number repea	98.78
PLN03138		796	Protein TOC75; Provisional	98.59
TIGR00992		718	3a0901s03IAP75 chloroplast envelope protein transl	98.46
COG2831		554	FhaC Hemolysin activation/secretion protein [Intra	98.14
COG0729		594	Outer membrane protein [Cell envelope biogenesis,	97.43
PF08479		76	POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013	95.9
PF11854		637	DUF3374: Protein of unknown function (DUF3374); In	90.72
PF08478		69	POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013	88.23
PF08478		69	POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013	83.68
PRK05529		255	cell division protein FtsQ; Provisional	83.4

>PLN03138 Protein TOC75; Provisional	Back alignment and domain information

Probab=100.00  E-value=3.5e-66  Score=581.56  Aligned_cols=536  Identities=21%  Similarity=0.315  Sum_probs=435.8

Q ss_pred             ccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHHHcCccceEeEEEE--ecCCcEE
Q 005510          130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAV--DTRDGIR  207 (693)
Q Consensus       130 ~~~~~e~~~I~~I~i~G~~N~~i~~~~l~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~~~GYf~a~v~~~~--~~~~~v~  207 (693)
                      ...--++.+|++|.|.|.  +.-....+++.+.++| .+++|..|++..|++|+++|++.|||+ .|.+.+  ..++.+.
T Consensus       141 ~~~~~~~~~vs~v~~~~~--~~~~~~~~e~~l~~~i-~~kpG~v~trsqLq~dv~~I~~tG~F~-~V~~~v~~~~dg~v~  216 (796)
T PLN03138        141 KLSGFKRYKVSEIEFFDR--RRNTTVGTEDSFFEMV-TLRPGGVYTKAQLQKELETLASCGMFE-KVDLEGKTKPDGTLG  216 (796)
T ss_pred             hcCCcceEEEEEEEEecc--ccCCCcchHHHHHHHH-hcCCCCccCHHHHHHHHHHHHhcCCce-EEEEEEEeCCCCeEE
Confidence            445567889999999871  2212223444444456 699999999999999999999999999 777654  3577899


Q ss_pred             EEEEEeeCCc--eEEEE------------EEcCcCCChhHHHHhhccCC-----------------------------CC
Q 005510          208 LVFQVEPNQE--FHGLV------------CEGANVLPTKFVEDAFRDGY-----------------------------GK  244 (693)
Q Consensus       208 l~~~V~EG~~--i~~I~------------~~Gn~~~~~~~L~~~~~~~~-----------------------------G~  244 (693)
                      |+|.|+||+.  +++|+            |+||+.+++++|++.+..++                             ..
T Consensus       217 V~~~i~Eg~~~~I~~I~~i~~~~~~~~~~~~GN~~fs~~el~~~~~~~e~~~~~~~~~a~~~~Lp~~v~~e~f~~~~~~g  296 (796)
T PLN03138        217 LTISFTESTWQSADSFRCINVGLMSQSKPIEMDEDMTDKEKMEYYRSQEKDYKRRIRKARPCLLPKSVRREVLGMLRDQG  296 (796)
T ss_pred             EEEEEEeCCceeeeeeeecccccccccceeeCCcccCHHHHHHHhhccccccccccccccccccchHHHHHHHhhhccCC
Confidence            9999999986  55888            99999999999888876643                             12


Q ss_pred             cccHHHHHHHHHHHHHHHHhCCc-eeEeeeEEEeeCcEEEEEEEEEEEEeEEEEEccccCCCCCcCCCCHHHHHhhcc--
Q 005510          245 VVNIRRLDEVITSINGWYMERGL-FGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLT--  321 (693)
Q Consensus       245 ~~~~~~l~~~~~~I~~~Y~~~GY-~a~V~~~~~~~~g~v~~~I~eg~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~--  321 (693)
                      .|+.++|++++++|+++|.++|| +++|.+....+++.|+++|.||.+..|+|++.++ .|+.+..+|+|.+|+|+|+  
T Consensus       297 klN~e~Lq~die~I~~~Y~d~GYafa~V~~~~~id~g~Vtl~V~EG~i~~I~V~~~dr-ig~~i~GNTrD~VIRREL~~~  375 (796)
T PLN03138        297 KVSARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTNEVVCEVVEGDITKVVIQFQDK-LGNVVEGNTQLPIIDRELPKQ  375 (796)
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCCceEEEecccccCCceEEEEEecccEEEEEEEeccc-ccccccCCccCeEEeeecccc
Confidence            59999999999999999999999 8999987777778899999999999999886653 2433345679999999997  


Q ss_pred             cCCCCccchHhHHHHHHHHHhCCCcccceeeeecC-CCCCeEEEEEEEEE--cCCceEEEeEeeecCcC--CC-CCcceE
Q 005510          322 TKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPA-GDTGKVDLIMNVVE--RPSGGFSAGGGISSGIT--SG-PLSGLI  395 (693)
Q Consensus       322 l~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~-~~~~~v~l~i~V~E--~~~~~~~~g~gyss~~~--~g-~~~g~~  395 (693)
                      ++||++||..++++++++|+++|+|++|++++.|+ ..++.++|+|+|+|  .+++.++++++|+.+..  .+ ...++.
T Consensus       376 lkeGd~fN~~~l~~slqRL~~LGlFedV~V~~~Pg~~~p~~VdL~V~VkE~e~~t~~ls~g~g~~~G~g~~Psl~S~g~~  455 (796)
T PLN03138        376 LRQGHIFNIEAGKQALRNINSLALFSNIEVNPRPDEKNEGGIVVEIKLKELEPKSAEVSTEWSIVPGRGGRPTLASIQPG  455 (796)
T ss_pred             cCCCcccCHHHHHHHHHHHHhCCCCceeEEEeccCCCCCCeEEEEEEEEEccCCceeEecccccccccCCCCccccccce
Confidence            59999999999999999999999999999999886 46899999999999  55566666666643210  00 125678


Q ss_pred             EEEEEeecccCcCCeEEEEEEEe-----cceeeEEEEEEecccccC--CCCceEEEEEEEeeccCCccccCCC--CCCCc
Q 005510          396 GSFAYSHRNVFGRNQKLNISLER-----GQIDSIFRINYTDPWIEG--DDKRTSRTIMVQNSRTPGTHVHGNQ--PDNSS  466 (693)
Q Consensus       396 ~~~~~~~~NlfG~G~~l~l~~~~-----g~~~~~~~lsy~~P~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~  466 (693)
                      +.++|+|+||+|+|+++.++++.     ++.+..+.++|++||+.+  ++.++++.+++|+++....++.+..  .....
T Consensus       456 Gtvs~~~~NL~G~g~~L~~~v~~s~~~~g~~d~~f~lsytdPWi~g~~d~~rts~~~~~f~~r~~s~vf~~~~~~~~~~~  535 (796)
T PLN03138        456 GTVSFEHRNIQGLNRSILGSVTSSNLLNPQDDLSFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPP  535 (796)
T ss_pred             eEEEEeccccccccceEEEEEEeecccCCccceEEEEEeecccccCCCCcccccEEEEEEecCcCCceeeCCCCcccCCc
Confidence            89999999999999999999998     356789999999999987  4555899999999887654444321  22234


Q ss_pred             eEEeEEEEEEEEEeecCCCeEEEEEEEEEEEeeecCCCCccc-------------------------ccccCCceeeecc
Q 005510          467 LTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPII-------------------------KDFYSSPLTASGK  521 (693)
Q Consensus       467 ~~~~~~g~~l~l~~~l~~~~~~~~gl~~~~~~~~~~~~~~~~-------------------------~~~~~~~l~~~~d  521 (693)
                      ....+.|+++.+++|+.+.+.+++++.|++....+..+....                         .+++...+.+++|
T Consensus       536 ~~~~R~G~~~~~~rp~~~~~~~s~g~~~q~v~~~d~~g~~~~~~~~~~~~~~~~~~g~plT~S~~g~D~l~~~~~~~trd  615 (796)
T PLN03138        536 IWVDRAGFKANITENFTRQSKFTYGLVVEEITTRDETSHICTHGQRVLPSGGLSADGPPTTLSGTGIDRMAFLQANITRD  615 (796)
T ss_pred             ceEeecccceEeecccCCCCceEEEEEEEEEEeecCCCCccccccccccccccccCCCceeeccCCcchhhheeeeeEec
Confidence            567899999999999998888899999999888765443211                         1233455678899


Q ss_pred             cCCceeEEEEEEEecCCCCCCCceEEEEeeecCCcCCCcceeEEEEEEEEEeEEec----------CceEEEEEeeceec
Q 005510          522 TNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIG----------PARLLLSLSGGHVV  591 (693)
Q Consensus       522 ~rD~~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~f~k~~~~~~~y~~l~----------~~~l~~~~~~G~~~  591 (693)
                      ++|++..|+       .|.    .+.++++|++|.+.++..|.|+.+++++|+|+.          +.+|++++++|.+.
T Consensus       616 ~~~~~~~pt-------~G~----~~~~~~EQ~lpvg~~~~~fNR~~~~~s~fipv~~~~~~~~~~~Pq~la~~~~aG~~~  684 (796)
T PLN03138        616 NTKFVNGAV-------VGD----RHIFQVDQGLGIGSKFPFFNRHQLTVTKFIQLNKVEKGAGKPPPPVLVLHGHYGGCV  684 (796)
T ss_pred             cCCCCCCCC-------ccc----eEEEEeeeeccccCCCCceEEEEEEEEEEEeeccccccccCCCCcEEEEEEecccee
Confidence            999998886       553    279999999998888889999999999999982          45799999999999


Q ss_pred             cCCCccCceecCCCCCccCCcCCCccccceEEEEeEEEEEecCCceeEEEEEEeeecCCCCCCCCCCCCCc------Ccc
Q 005510          592 GNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGGFLYD------WPH  665 (693)
Q Consensus       592 g~lp~~e~F~lGG~~svRGy~~~~lg~G~~~~~~s~Elr~pl~~~l~~~~F~D~G~v~~~~~~~~~~~~~~------~~s  665 (693)
                      |++|++|.|.|||.+|||||..++++.|++++.+++|||+|+ .++.+++|+|+|+.|....+++++|...      -.|
T Consensus       685 GdLPpYEAF~LGG~nSVRGY~eG~lg~gRs~l~asaEyRfPi-~~~~g~~F~D~GsdLgS~~~V~G~P~~~r~kpG~G~s  763 (796)
T PLN03138        685 GDLPSYDAFTLGGPYSVRGYNMGELGAARNILEVAAELRIPV-RNTHVYAFAEHGTDLGSSKDVKGNPTEFFRRAGHGSS  763 (796)
T ss_pred             cCCCcHHhcccCCCCcccCcccCcccccceeEEEEEEEEeee-ccceEEEEEEeccccCCCCCCCCCchhhccCCCCCcc
Confidence            999999999999999999999999999999999999999999 5678999999999999999999988653      245


Q ss_pred             ceeEEEEEecCCCCcccceeecccc
Q 005510          666 VSYAFKVCSLPPPPRLQPYFVYLFC  690 (693)
Q Consensus       666 ~G~Glr~~tpiGPi~~dir~dy~~~  690 (693)
                      +|+|+|    +|||    |+|||++
T Consensus       764 yG~Gvr----lGpi----R~dYa~~  780 (796)
T PLN03138        764 YGVGVK----LGLV----RAEYAVD  780 (796)
T ss_pred             cceeeE----ecce----eEEEeec
Confidence            555655    7876    5666665

>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family	Back alignment and domain information

>PRK11067 outer membrane protein assembly factor YaeT; Provisional	Back alignment and domain information

>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein	Back alignment and domain information

>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	Back alignment and domain information

>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []	Back alignment and domain information

>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate	Back alignment and domain information

>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein	Back alignment and domain information

>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only]	Back alignment and domain information

>PRK11067 outer membrane protein assembly factor YaeT; Provisional	Back alignment and domain information

>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO)	Back alignment and domain information

>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus	Back alignment and domain information

>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus	Back alignment and domain information

>PLN03138 Protein TOC75; Provisional	Back alignment and domain information

>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family	Back alignment and domain information

>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	Back alignment and domain information

>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO)	Back alignment and domain information

>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]	Back alignment and domain information

>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain)	Back alignment and domain information

>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain)	Back alignment and domain information

>PRK05529 cell division protein FtsQ; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		693
3mc8_A		316	Potra1-3 Of The Periplasmic Domain Of Omp85 From An		2e-29
2x8x_X		235	Structure Of The N-Terminal Domain Of Omp85 From Th		2e-26

>pdb|3MC8|A Chain A, Potra1-3 Of The Periplasmic Domain Of Omp85 From Anabaena Length = 316

Back alignment and structure

Iteration: 1

Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 145/260 (55%), Gaps = 17/260 (6%) Query: 126 PHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHR 185 P++ + E RVL+SEVLVR + G+ +LET+ ++ + T ++QED++ Sbjct: 51 PNATPETTEPRVLVSEVLVRPQSGQLT--PELETQVYNVIR-TQPGRTTTRSQLQEDINA 107 Query: 186 IIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCE---GANV---LPTKFVEDAFR 239 I +G+F + DT G+R+ F V+PN + + G NV LP ++ FR Sbjct: 108 IFGTGFFSNVQASPEDTPLGVRVSFIVQPNPVLSKVEIQANPGTNVPSVLPQATADEIFR 167 Query: 240 DGYGKVVNIRRLDEVITSINGWYMERG--LFGMVSGVEILSGGIIRLQVAEAEVNNISIR 297 YGK++N+R L E I + Y ++G L +V ++ G++ LQVAE V NIS+R Sbjct: 168 AQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQVSENGVVTLQVAEGVVENISVR 227 Query: 298 FLDRK------TGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSI 351 F +++ G+P +G+T+ I R++ K GQV++ ++D++ V G+ EDV++ Sbjct: 228 FRNKEGQDVNEQGQPIRGRTQDYIITREVELKPGQVFNRNTVQKDLQRVFGTGLFEDVNV 287 Query: 352 IPQPAGDTGKVDLIMNVVER 371 P D KV++++NVVER Sbjct: 288 SLDPGTDPTKVNVVVNVVER 307

PyMOL of 3mc8

>pdb|2X8X|X Chain X, Structure Of The N-Terminal Domain Of Omp85 From The Thermophilic Cyanobacterium Thermosynechococcus Elongatus Length = 235

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		693
3mc9_A		316	ALR2269 protein; polypeptide transport associated,	1e-46
2x8x_X		235	TLR1789 protein, OMP85; chaperone, TOC75, protein	3e-45
2qdz_A		554	TPSB transporter FHAC; beta barrel, potra domain,	1e-23
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
3q6b_A		189	Outer membrane protein assembly complex, YAET Pro;	4e-06
3efc_A		395	OMP85, outer membrane protein assembly factor YAET	7e-04

>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A Length = 316	Back alignment and structure

 Score =  167 bits (423), Expect = 1e-46
 Identities = 87/285 (30%), Positives = 151/285 (52%), Gaps = 17/285 (5%)

Query: 104 QSSAEFPAQSELSTQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALT 163
            +    PA +  +T   +    P++   + E RVL+SEVLVR + G+     +LET+   
Sbjct: 29  TTEQPAPAPAPGTTPGTENFNTPNATPETTEPRVLVSEVLVRPQSGQL--TPELETQVYN 86

Query: 164 ALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVC 223
            ++  +     T  ++QED++ I  +G+F +      DT  G+R+ F V+PN     +  
Sbjct: 87  VIR-TQPGRTTTRSQLQEDINAIFGTGFFSNVQASPEDTPLGVRVSFIVQPNPVLSKVEI 145

Query: 224 EG------ANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERG--LFGMVSGVE 275
           +        +VLP    ++ FR  YGK++N+R L E I  +   Y ++G  L  +V   +
Sbjct: 146 QANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQ 205

Query: 276 ILSGGIIRLQVAEAEVNNISIRFLDRK------TGEPTKGKTRPETILRQLTTKKGQVYS 329
           +   G++ LQVAE  V NIS+RF +++       G+P +G+T+   I R++  K GQV++
Sbjct: 206 VSENGVVTLQVAEGVVENISVRFRNKEGQDVNEQGQPIRGRTQDYIITREVELKPGQVFN 265

Query: 330 MLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSG 374
               ++D++ V   G+ EDV++   P  D  KV++++NVVER   
Sbjct: 266 RNTVQKDLQRVFGTGLFEDVNVSLDPGTDPTKVNVVVNVVERSLE 310

PyMOL of 3mc9

>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus} Length = 235	Back alignment and structure

>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A Length = 554	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A Length = 189	Back alignment and structure

>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli} Length = 395	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00