Citrus Sinensis ID: 005512
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 693 | 2.2.26 [Sep-21-2011] | |||||||
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | yes | no | 0.910 | 0.779 | 0.404 | 1e-152 | |
| Q9LW32 | 659 | Pentatricopeptide repeat- | no | no | 0.860 | 0.904 | 0.407 | 1e-144 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.930 | 0.724 | 0.392 | 1e-141 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.886 | 0.884 | 0.379 | 1e-139 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.932 | 0.903 | 0.354 | 1e-138 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.932 | 0.741 | 0.390 | 1e-138 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.948 | 0.890 | 0.351 | 1e-135 | |
| P0C899 | 686 | Putative pentatricopeptid | no | no | 0.932 | 0.941 | 0.371 | 1e-135 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.920 | 0.775 | 0.373 | 1e-132 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.881 | 0.771 | 0.377 | 1e-131 |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 539 bits (1389), Expect = e-152, Method: Compositional matrix adjust.
Identities = 266/658 (40%), Positives = 410/658 (62%), Gaps = 27/658 (4%)
Query: 60 KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
K +H ++S F DLF +T L + YA ++ A +F + + DL WN ++ +
Sbjct: 155 KEIHGLLVKSGF--SLDLFAMTGLENMYAKCRQVNEARKVFDRMPER-DLVSWNTIVAGY 211
Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
N +L++ M E ++ P T VL A LR I G ++H A+ SG+ S V
Sbjct: 212 SQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLV 271
Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
+ +L+ MY KCG ++ RQLFD M ERNVV+W+S+ AY QN +E +L+F++M+DE
Sbjct: 272 NISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDE 331
Query: 240 GIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
G++P V ++ A+ + + + + ++ V+ GLD + S+ N+ + MY +C +D A
Sbjct: 332 GVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTA 391
Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
F + ++ LVSW +MI +AQ P++AL + QM R V PD+ T++ VI A + L
Sbjct: 392 ASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAEL 451
Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
+ A+ +HG+++ L + + TA+VD+Y KCG++M AR +FD M +++V +W+ MI
Sbjct: 452 SITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMI 511
Query: 417 SGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
GYG HG G+ AL LF++M K IKP+ +TF+SV+SACSH+GL++ G +CF M ++ +
Sbjct: 512 DGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSI 571
Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
+HY MVD+LGRAG+LNEA +FI +MP++P V+G++LGAC+IH NV AE AA+
Sbjct: 572 ELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAE 631
Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
LF+L+ ++ G +V+L+NIY ++ + ++R M R+G++K G +++EIKN+VH+F
Sbjct: 632 RLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFF 691
Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------------FPFVFGL 635
+G + P ++ Y+ L KL+ I+ GY PD N FGL
Sbjct: 692 SGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLSTHSEKLAISFGL 751
Query: 636 LNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
LN+ G+ I ++KNLRVC DCH ATK+IS VTGREI+VRD RFHHFK+G CSCGDYW
Sbjct: 752 LNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 257/630 (40%), Positives = 385/630 (61%), Gaps = 34/630 (5%)
Query: 98 SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
+LF+ D D+F WN +I + +L ++ MR+L + P + +FP +KAC L
Sbjct: 30 TLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSL 89
Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
DI G + H+ A GY SD+FV ++LI MY CG+++ R++FDE+P+RN+V+W+S+
Sbjct: 90 FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMI 149
Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---------ADDVCRVV 268
Y NG + + LFK ++ + + + L++M V +S + + V
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209
Query: 269 VDNGLDLDQSLQNAAMVMYARCGR--MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
+ G D S+ N + YA+ G + +AR+ F+ I++KD VS+ S++ YAQ+ + E
Sbjct: 210 IKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE 269
Query: 327 ALEVYRQMILRRVLP-DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
A EV+R+++ +V+ +++T V+ A S + + + +H +I L + + + T+++
Sbjct: 270 AFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII 329
Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHI 444
D+Y KCG + ARK FDRMK KNV SW+ MI+GYGMHGH +AL LF M + ++P++I
Sbjct: 330 DMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYI 389
Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
TFVSVL+ACSHAGL EGW FN+M FGV P EHY CMVD+LGRAG L +A + I+R
Sbjct: 390 TFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQR 449
Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
M ++PD+ +W SLL ACRIH NVELAE++ LF+LD+ N G Y++LS+IYA +G+ +
Sbjct: 450 MKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDV 509
Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
R+R +MK RG+ K G +++E+ +VH F+ GD PQ E Y LA+L ++ GY
Sbjct: 510 ERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYV 569
Query: 625 PDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFI 663
+ + FG++N+ PGS + + KNLRVC DCH K I
Sbjct: 570 SNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLI 629
Query: 664 SKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
SK+ RE +VRDA RFHHFKDG CSCGDYW
Sbjct: 630 SKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 501 bits (1290), Expect = e-141, Method: Compositional matrix adjust.
Identities = 270/688 (39%), Positives = 407/688 (59%), Gaps = 43/688 (6%)
Query: 45 TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
T S++ + L K +HA+ LR + F++ LV+ Y LG ++ + L S
Sbjct: 207 TACSNLPMPEGLMMGKQVHAYGLRK---GELNSFIINTLVAMYGKLGKLASSKVLLGSFG 263
Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
DL WN ++ + N Q +L+ +M + PD+FT VL AC +L + G
Sbjct: 264 GR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 322
Query: 165 KVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
++H A+ +G + FVG++L+ MY C +V R++FD M +R + W+++ Y+QN
Sbjct: 323 ELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 382
Query: 224 GCYEEGLLLFKRMMDE-GIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSL 279
+E LLLF M + G+ N + + ACVR S + + VV GLD D+ +
Sbjct: 383 EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFV 442
Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM--ILR 337
QN M MY+R G++D+A R F + ++DLV+W +MI Y ++ +AL + +M + R
Sbjct: 443 QNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLER 502
Query: 338 RV---------LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
+V P+S+T + ++ +C++L++ + + +H I L +A+ +A+VD+Y
Sbjct: 503 KVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMY 562
Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFV 447
KCG L +RKVFD++ QKNVI+W+ +I YGMHG+G+EA+ L M +KP+ +TF+
Sbjct: 563 AKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFI 622
Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
SV +ACSH+G++DEG F M D+GV P +HYAC+VD+LGRAG++ EA + + MP
Sbjct: 623 SVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPR 682
Query: 508 RPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
+ AG W SLLGA RIH+N+E+ E+AA+ L L+ YV+L+NIY+S+G +A
Sbjct: 683 DFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATE 742
Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
+R MK +GV+K G + IE ++VH FVAGD S PQ+E L L +R+R+EGY PD
Sbjct: 743 VRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPD 802
Query: 627 LN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISK 665
+ FG+LN+ PG+ IR+ KNLRVC DCH ATKFISK
Sbjct: 803 TSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISK 862
Query: 666 VTGREIIVRDAHRFHHFKDGTCSCGDYW 693
+ REII+RD RFH FK+GTCSCGDYW
Sbjct: 863 IVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1278), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/643 (37%), Positives = 387/643 (60%), Gaps = 29/643 (4%)
Query: 78 FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
FL+T L+ +S G I+ A +F + +F WN +IR + N F +L +Y+ M+
Sbjct: 54 FLITKLIHASSSFGDITFARQVFDDLPRP-QIFPWNAIIRGYSRNNHFQDALLMYSNMQL 112
Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
++PD FTFP +LKAC L ++ G VH G+ +DVFV N LIA+Y KC R+
Sbjct: 113 ARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGS 172
Query: 198 CRQLFD--EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
R +F+ +PER +V+W+++ AYAQNG E L +F +M ++P+ V +LNA
Sbjct: 173 ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAF 232
Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
C++ + + + VV GL+++ L + MYA+CG++ A+ F+ + + +L+ W
Sbjct: 233 TCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292
Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
+MI YA+ EA++++ +MI + V PD+++ I AC+ + S +QAR+++ +
Sbjct: 293 AMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS 352
Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
+ + + +A++D++ KCGS+ AR VFDR ++V+ WS MI GYG+HG REA+ L+
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLY 412
Query: 433 DQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
M + + P+ +TF+ +L AC+H+G++ EGW FN M D + P+ +HYAC++D+LGR
Sbjct: 413 RAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGR 471
Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
AG L++A E I+ MP++P VWG+LL AC+ H +VEL E AA+ LF +D N G YV L
Sbjct: 472 AGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQL 531
Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
SN+YA++ +R MK +G+ K G + +E++ ++ F GD+S P+ E ++
Sbjct: 532 SNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQV 591
Query: 612 AKLMDRIRREGYTP-------DLN--------------FPFVFGLLNSGPGSAIRIKKNL 650
+ R++ G+ DLN +GL+++ G+ +RI KNL
Sbjct: 592 EWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNL 651
Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
R C +CH ATK ISK+ REI+VRD +RFHHFKDG CSCGDYW
Sbjct: 652 RACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 492 bits (1266), Expect = e-138, Method: Compositional matrix adjust.
Identities = 252/711 (35%), Positives = 396/711 (55%), Gaps = 65/711 (9%)
Query: 44 ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
+T I + + ++ K LHA +R++ H +V ++ + L F S
Sbjct: 9 KTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSP 68
Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
+ W +IR F D F ++L + +MR PD FP VLK+C + D+ FG
Sbjct: 69 P----VLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFG 124
Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGK---------CGRV------------------- 195
VH V G D++ GN+L+ MY K G V
Sbjct: 125 ESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAE 184
Query: 196 --------DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
D R++F+ MP ++VV+++++ YAQ+G YE+ L + + M ++P+
Sbjct: 185 TCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFT 244
Query: 248 ILNAMACVRK---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
+ + + + V + ++ V+ G+D D + ++ + MYA+ R++ + R F +
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLY 304
Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
+D +SW S++ Y Q EAL ++RQM+ +V P +V F VI AC+ LA+ +
Sbjct: 305 CRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ 364
Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
+HG ++ G+ + + +A+VD+Y KCG++ ARK+FDRM + +SW+ +I G+ +HGH
Sbjct: 365 LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGH 424
Query: 425 GREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483
G EA+ LF++MK +KP+ + FV+VL+ACSH GL+DE W FNSM + +G+ EHYA
Sbjct: 425 GHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYA 484
Query: 484 CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE 543
+ D+LGRAGKL EA FI +M + P VW +LL +C +H N+ELAE A+ +F +D+E
Sbjct: 485 AVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSE 544
Query: 544 NPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQ 603
N G YV++ N+YAS+G+ E ++R M+++G++K + IE+KNK H FV+GDRS P
Sbjct: 545 NMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPS 604
Query: 604 TELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGS 642
+ L +M+++ +EGY D + FG++N+ PG+
Sbjct: 605 MDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGT 664
Query: 643 AIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
IR+ KN+R+C DCH A KFISK+T REIIVRD RFHHF G CSCGDYW
Sbjct: 665 TIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 492 bits (1266), Expect = e-138, Method: Compositional matrix adjust.
Identities = 264/676 (39%), Positives = 397/676 (58%), Gaps = 30/676 (4%)
Query: 45 TCIS-SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
+C+S S +++ + LH F L+S F + + +LV+ Y + A +F +
Sbjct: 199 SCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG--NSLVAFYLKNQRVDSARKVFDEM 256
Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
++ D+ WN +I +V N ++ L ++ QM I D T V C R I G
Sbjct: 257 TER-DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 315
Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
VH V + + + N+L+ MY KCG +D + +F EM +R+VV+++S+ YA+
Sbjct: 316 RAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYARE 375
Query: 224 GCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
G E + LF+ M +EGI P+ +LN A R + E V + +N L D +
Sbjct: 376 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS 435
Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL-RRV 339
NA M MYA+CG M A F + KD++SW ++I Y++ EAL ++ ++ +R
Sbjct: 436 NALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRF 495
Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
PD T V+ AC+SL++F + R +HG I+ + + ++VD+Y KCG+L+ A
Sbjct: 496 SPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHM 555
Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGL 458
+FD + K+++SW+ MI+GYGMHG G+EA+ LF+QM+ A I+ D I+FVS+L ACSH+GL
Sbjct: 556 LFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGL 615
Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
+DEGW FN M + + P EHYAC+VDML R G L +A FIE MPI PDA +WG+LL
Sbjct: 616 VDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALL 675
Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
CRIH +V+LAE A+ +F+L+ EN G YV+++NIYA + K + R+R + +RG++K
Sbjct: 676 CGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRK 735
Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV------ 632
G + IEIK +V+ FVAGD S P+TE + L K+ R+ EGY+P + +
Sbjct: 736 NPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEME 795
Query: 633 ---------------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
G+++SG G IR+ KNLRVCGDCH KF+SK+T REI++RD++
Sbjct: 796 KEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSN 855
Query: 678 RFHHFKDGTCSCGDYW 693
RFH FKDG CSC +W
Sbjct: 856 RFHQFKDGHCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 483 bits (1242), Expect = e-135, Method: Compositional matrix adjust.
Identities = 255/725 (35%), Positives = 411/725 (56%), Gaps = 68/725 (9%)
Query: 32 SSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA--S 89
S+P Q T + IS I++C +L+ LK H +R+ + D + + L + A S
Sbjct: 19 SNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFS--DPYSASKLFAMAALSS 76
Query: 90 LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA---QMRELDINPDKFT 146
S+ +A +F + + F WN +IRA+ D L ++A + E P+K+T
Sbjct: 77 FASLEYARKVFDEIPKP-NSFAWNTLIRAYASGP--DPVLSIWAFLDMVSESQCYPNKYT 133
Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
FPF++KA + + G +H AV S SDVFV NSLI Y CG +D ++F +
Sbjct: 134 FPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK 193
Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADD 263
E++VV+W+S+ + Q G ++ L LFK+M E ++ + V +L+A A +R +
Sbjct: 194 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253
Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA---- 319
VC + +N ++++ +L NA + MY +CG ++ A+R F+ + KD V+WT+M++ YA
Sbjct: 254 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 313
Query: 320 ------------QADL---------------PLEALEVYRQMILRRVLP-DSVTFLGVIR 351
Q D+ P EAL V+ ++ L++ + + +T + +
Sbjct: 314 YEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLS 373
Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
AC+ + + + R +H I + + +A++ +Y KCG L +R+VF+ +++++V
Sbjct: 374 ACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFV 433
Query: 412 WSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
WS MI G MHG G EA+ +F +M+ A +KP+ +TF +V ACSH GL+DE F+ M
Sbjct: 434 WSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQME 493
Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
++G+ P +HYAC+VD+LGR+G L +A +FIE MPI P VWG+LLGAC+IH+N+ LA
Sbjct: 494 SNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLA 553
Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
EMA L +L+ N G +V+LSNIYA GK + +R M+ G+KK G + IEI
Sbjct: 554 EMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGM 613
Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------- 628
+H F++GD + P +E Y +L ++M++++ GY P+++
Sbjct: 614 IHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEK 673
Query: 629 FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
+GL+++ IR+ KNLRVCGDCH+ K IS++ REIIVRD +RFHHF++G CS
Sbjct: 674 LAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCS 733
Query: 689 CGDYW 693
C D+W
Sbjct: 734 CNDFW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 481 bits (1237), Expect = e-135, Method: Compositional matrix adjust.
Identities = 264/710 (37%), Positives = 396/710 (55%), Gaps = 64/710 (9%)
Query: 15 LTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQC----QTLQSLKTLHAFTLRSR 70
L F R+ S+S P+ + + P+ + + Q +++L+T+H+ +
Sbjct: 10 LLHFPKFRKFQSRKVSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILED 69
Query: 71 FYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQ 130
+ L + L+ YASL ++ A +F + + ++ + NVMIR++V+N + ++
Sbjct: 70 LRCNSSLGV--KLMRAYASLKDVASARKVFDEIPER-NVIIINVMIRSYVNNGFYGEGVK 126
Query: 131 LYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
++ M ++ PD +TFP VLKAC I G K+H A G S +FVGN L++MYG
Sbjct: 127 VFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYG 186
Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
KCG + R + DEM R+VV+W+SL YAQN +++ L + + M I + + +
Sbjct: 187 KCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMAS 246
Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
+ V + + VMY + DM FF+ + K LVS
Sbjct: 247 LLPAVSNTTTEN----------------------VMYVK----DM---FFK-MGKKSLVS 276
Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
W MI Y + +P+EA+E+Y +M PD+V+ V+ AC ++ + +HG I
Sbjct: 277 WNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIE 336
Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
L L L+ A++D+Y KCG L AR VF+ MK ++V+SW+ MIS YG G G +A+
Sbjct: 337 RKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVA 396
Query: 431 LFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
LF +++ + + PD I FV+ L+ACSHAGL++EG CF M + + PR EH ACMVD+L
Sbjct: 397 LFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLL 456
Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
GRAGK+ EA FI+ M + P+ VWG+LLGACR+HS+ ++ +AA LF L E G YV
Sbjct: 457 GRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYV 516
Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
+LSNIYA +G+ E IR +MK +G+KK G + +E+ +HTF+ GDRS PQ++ Y
Sbjct: 517 LLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYR 576
Query: 610 ELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNS-----GPGSA 643
EL L+ +++ GY PD VF L+N+ +
Sbjct: 577 ELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNT 636
Query: 644 IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
IRI KNLR+CGDCH A K IS++T REII+RD +RFH F+ G CSCGDYW
Sbjct: 637 IRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 256/686 (37%), Positives = 396/686 (57%), Gaps = 48/686 (6%)
Query: 42 DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
D T S +K C+T+ +H L+ F D+++ +L+ Y+ ++ +A LF
Sbjct: 152 DYRTFPSVLKACRTVIDGNKIHCLALKFGFMW--DVYVAASLIHLYSRYKAVGNARILFD 209
Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
+ D+ WN MI + + +L L +R +D T +L AC D
Sbjct: 210 EMPVR-DMGSWNAMISGYCQSGNAKEALTLSNGLRAMD----SVTVVSLLSACTEAGDFN 264
Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
GV +H ++ G S++FV N LI +Y + GR+ C+++FD M R++++W+S+ AY
Sbjct: 265 RGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYE 324
Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDL------ 275
N + LF+ M I+P+ + +++ + + ++ + CR V G L
Sbjct: 325 LNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIR-ACRSV--QGFTLRKGWFL 381
Query: 276 -DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
D ++ NA +VMYA+ G +D AR F + N D++SW ++I YAQ EA+E+Y M
Sbjct: 382 EDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIM 441
Query: 335 ILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD----TAVVDLYV 389
+ + T++ V+ ACS + +Q +HG + L N L LD T++ D+Y
Sbjct: 442 EEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRL----LKNGLYLDVFVVTSLADMYG 497
Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVS 448
KCG L A +F ++ + N + W+T+I+ +G HGHG +A+ LF +M +KPDHITFV+
Sbjct: 498 KCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVT 557
Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR 508
+LSACSH+GL+DEG CF M D+G+ P +HY CMVDM GRAG+L A +FI+ M ++
Sbjct: 558 LLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQ 617
Query: 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIR 568
PDA +WG+LL ACR+H NV+L ++A++ LF+++ E+ G +V+LSN+YAS+GK + IR
Sbjct: 618 PDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIR 677
Query: 569 ALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN 628
++ +G++K G + +E+ NKV F G+++ P E Y EL L +++ GY PD
Sbjct: 678 SIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHR 737
Query: 629 F---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVT 667
F F L+ + + IRI KNLRVCGDCH+ TKFISK+T
Sbjct: 738 FVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKIT 797
Query: 668 GREIIVRDAHRFHHFKDGTCSCGDYW 693
REIIVRD++RFHHFK+G CSCGDYW
Sbjct: 798 EREIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 469 bits (1207), Expect = e-131, Method: Compositional matrix adjust.
Identities = 244/647 (37%), Positives = 364/647 (56%), Gaps = 36/647 (5%)
Query: 76 DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
+L L +N+V Y + A +F + + D LWN MI + N + S+Q++ +
Sbjct: 153 ELLLGSNIVKMYFKFWRVEDARKVFDRMPEK-DTILWNTMISGYRKNEMYVESIQVFRDL 211
Query: 136 -RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
E D T +L A L+++ G+++H A +G +S +V I++Y KCG+
Sbjct: 212 INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGK 271
Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
+ + LF E + ++V ++++ Y NG E L LFK +M G R L +
Sbjct: 272 IKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAR------LRSSTL 325
Query: 255 VRKVSEADDVCRVVVDNGLDLDQ------SLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
V V + + + +G L S+ A +Y++ ++ AR+ F+ K L
Sbjct: 326 VSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSL 385
Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
SW +MI Y Q L +A+ ++R+M P+ VT ++ AC+ L + + VH +
Sbjct: 386 PSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDL 445
Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
+ + + + TA++ +Y KCGS+ AR++FD M +KN ++W+TMISGYG+HG G+EA
Sbjct: 446 VRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEA 505
Query: 429 LFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
L +F +M + I P +TF+ VL ACSHAGL+ EG E FNSM+ +G P +HYACMVD
Sbjct: 506 LNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVD 565
Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
+LGRAG L A +FIE M I P + VW +LLGACRIH + LA ++ LF+LD +N G
Sbjct: 566 ILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGY 625
Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
+V+LSNI+++ +A +R K+R + K G+T+IEI H F +GD+S PQ +
Sbjct: 626 HVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEI 685
Query: 608 YSELAKLMDRIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIRI 646
Y +L KL ++R GY P+ FGL+ + PG+ IRI
Sbjct: 686 YEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRI 745
Query: 647 KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
KNLRVC DCHT TK ISK+T R I+VRDA+RFHHFKDG CSCGDYW
Sbjct: 746 IKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 693 | ||||||
| 296082238 | 778 | unnamed protein product [Vitis vinifera] | 0.836 | 0.745 | 0.687 | 0.0 | |
| 224068783 | 581 | predicted protein [Populus trichocarpa] | 0.806 | 0.962 | 0.669 | 0.0 | |
| 148909481 | 795 | unknown [Picea sitchensis] | 0.952 | 0.830 | 0.405 | 1e-159 | |
| 224073070 | 704 | predicted protein [Populus trichocarpa] | 0.916 | 0.901 | 0.425 | 1e-154 | |
| 359488543 | 1154 | PREDICTED: uncharacterized protein LOC10 | 0.606 | 0.363 | 0.642 | 1e-153 | |
| 328774749 | 771 | pentatricopeptide repeat protein 65 [Fun | 0.924 | 0.831 | 0.410 | 1e-153 | |
| 357508385 | 672 | Pentatricopeptide repeat-containing prot | 0.857 | 0.883 | 0.433 | 1e-153 | |
| 359488559 | 735 | PREDICTED: pentatricopeptide repeat-cont | 0.860 | 0.810 | 0.420 | 1e-153 | |
| 225449798 | 849 | PREDICTED: pentatricopeptide repeat-cont | 0.890 | 0.726 | 0.420 | 1e-151 | |
| 168003497 | 723 | predicted protein [Physcomitrella patens | 0.924 | 0.886 | 0.410 | 1e-150 |
| >gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/585 (68%), Positives = 474/585 (81%), Gaps = 5/585 (0%)
Query: 45 TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
CI+ IKQC TL++LK+LHA L+S + H L T+L++QYASLGSISHA++LFS+ S
Sbjct: 6 NCIALIKQCVTLEALKSLHASILKSHLHPH----LCTSLIAQYASLGSISHAYALFST-S 60
Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
S ++FLWN +IRAF + SL+LY++M +L I FTFPF+LKACG L D E G
Sbjct: 61 HSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGA 120
Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
+ H V GY SDVFV NSL+AMYG+ G D RQ+F+ MPERNVV+WSS+ GAYA NG
Sbjct: 121 RAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNG 180
Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
YEEGLLLF RM++EGI PNR I+NAMAC+ + EADD CRVV+DNGLD DQS+QNAAM
Sbjct: 181 RYEEGLLLFWRMLNEGIAPNRGSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAM 240
Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
MYARCGR+D+ARRFF GIL+KDLV+WTSMIEAY QADLP+ ALE+++QM L ++PDSV
Sbjct: 241 GMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSV 300
Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
T L +I A S+LASFQ AR VHG+I F N +ALDTAV+DLYVKCG+L +ARK FDRM
Sbjct: 301 TLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRM 360
Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464
+N+ISWSTMISGYGMHGHGREAL LFDQMKA IKPDHI FV VLSACSH GLI EGWE
Sbjct: 361 SARNLISWSTMISGYGMHGHGREALCLFDQMKASIKPDHIAFVMVLSACSHGGLIAEGWE 420
Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
CF +M RDFGV PR EHYACMVD+LGRAG+L+EA+ FIERMPI PDAGVWG+LLGACRIH
Sbjct: 421 CFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIH 480
Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
SN+E AE AA+ LF+LDAENPGRY++LSNIYASSGKR EA+ IRALMK RGV+K GHT+
Sbjct: 481 SNLETAETAARHLFNLDAENPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTI 540
Query: 585 IEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF 629
IEIKNKV+TFVAGD S PQT+L YSEL KLMDRI+ GY PDL+F
Sbjct: 541 IEIKNKVYTFVAGDTSNPQTDLIYSELRKLMDRIQEAGYVPDLSF 585
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa] gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/581 (66%), Positives = 469/581 (80%), Gaps = 22/581 (3%)
Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
M L I PD FTFPF++KAC LR EFG+++H+D V GY S VF+ NSLI MYGKC +
Sbjct: 1 MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60
Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
++ RQ+FDEMP++N V+WS++ GA Q+ +EG LF++M+ EG RP+R ILNAMAC
Sbjct: 61 YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMAC 120
Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
VR EADDV RVVV+NGLD DQS+Q+AA M+ARCGR+++AR+ F+GI++KDLV+W +
Sbjct: 121 VRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATT 180
Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
IEAY +AD+PLEAL + +QM+L+ + PD++T LGVIRACS+LASFQ A VHGII F
Sbjct: 181 IEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFF 240
Query: 375 GNQL-ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
NQL A++TA++DLYVKCGSL +ARKVFD M+++N+I+WS MISGYGMHG GREAL LFD
Sbjct: 241 YNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFD 300
Query: 434 QMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
QMKA +KPDHITFVS+LSACSH+GL+ EGWECFNSM RDFGV PRPEHYACMVD+LGRAG
Sbjct: 301 QMKASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAG 360
Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
KL+EA +FIERMP+RP+A VWG+LLGACRIH NV+LAEM A+ALFDLD N GRYVIL N
Sbjct: 361 KLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYN 420
Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
IY +GKR EA+ IR LMK RGVKKI G++VIEIKNK++ FVAGDRS PQT+L YSEL +
Sbjct: 421 IYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELER 480
Query: 614 LMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRV 652
LMDRIR+EGYTPD+NF VFGLLN GPGS IRI+KNLRV
Sbjct: 481 LMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRV 540
Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
CGDCHTATKFISKVTGREI+VRDAHRFHHFK+G CSC DYW
Sbjct: 541 CGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 283/698 (40%), Positives = 424/698 (60%), Gaps = 38/698 (5%)
Query: 26 RLFFSASSPQQQTEFFDPETCI--SSIKQCQT---LQSLKTLHAFTLRSRFYHHHDLFLV 80
RL++ Q Q +P+ + S IK C + LQ+ + +H + F D+ +
Sbjct: 106 RLYY-----QMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGF--ESDVIVG 158
Query: 81 TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
T L S Y GS+ +A +F + D+ WN +I + N Q +L L+++M+ I
Sbjct: 159 TALASMYTKCGSLENARQVFDRMPKR-DVVSWNAIIAGYSQNGQPYEALALFSEMQVNGI 217
Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
P+ T V+ C +L +E G ++H A+ SG SDV V N L+ MY KCG V+ +
Sbjct: 218 KPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHK 277
Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRK 257
LF+ MP R+V +W+++ G Y+ N + E L F RM GI+PN + +L A A +
Sbjct: 278 LFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFA 337
Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
+ + + + +G + + + NA + MYA+CG ++ A + FE + K++V+W ++I
Sbjct: 338 LEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISG 397
Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
Y+Q P EAL ++ +M + + PDS + V+ AC+ + +Q + +HG I +
Sbjct: 398 YSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESN 457
Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA 437
+ + T +VD+Y KCG++ A+K+F+RM +++V+SW+TMI YG+HGHG +AL LF +M+
Sbjct: 458 VVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQE 517
Query: 438 L-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
K DHI F ++L+ACSHAGL+D+G + F M D+G+AP+ EHYAC+VD+LGRAG L+
Sbjct: 518 TGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLD 577
Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
EA I+ M + PDA VWG+LLGACRIH N+EL E AAK LF+LD +N G YV+LSNIYA
Sbjct: 578 EANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYA 637
Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMD 616
+ + + ++R +MK +GVKK G +V+ + V TF+ GDR+ PQ+E Y+ L L +
Sbjct: 638 EAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYE 697
Query: 617 RIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGD 655
++R+ GY P+ N FG++N+ PG IRI KNLRVC D
Sbjct: 698 QMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSD 757
Query: 656 CHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
CH ATKFISK+ GREIIVRDA+RFHH K+G CSCGDYW
Sbjct: 758 CHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795
|
Source: Picea sitchensis Species: Picea sitchensis Genus: Picea Family: Pinaceae Order: Coniferales Class: Coniferopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa] gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 282/662 (42%), Positives = 413/662 (62%), Gaps = 27/662 (4%)
Query: 56 LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
L+ K +H + S F +LF +T +V+ YA I+ A+++F + + DL WN M
Sbjct: 46 LKRGKEIHGSVITSGF--SWNLFAMTGVVNMYAKCRQINDAYNMFDRMPER-DLVCWNTM 102
Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
I + N +L L +M E PD T +L A R + G+ VH + +G+
Sbjct: 103 ISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGF 162
Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
S V V +L+ MY KCG V + R +FD M R VV+W+S+ Y Q+G E +L+F++
Sbjct: 163 ESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQK 222
Query: 236 MMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
M+DEG++P V ++ A+ AC + + V ++V LD D S+ N+ + MY++C R
Sbjct: 223 MLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKR 282
Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
+D+A F+ + NK LVSW +MI YAQ EAL + +M R + PDS T + VI A
Sbjct: 283 VDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPA 342
Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
+ L+ +QA+ +HG++I FL + + TA+VD+Y KCG++ ARK+FD M ++VI+W
Sbjct: 343 LAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITW 402
Query: 413 STMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
+ MI GYG HG G+ ++ LF +MK IKP+ ITF+ LSACSH+GL++EG F SM +
Sbjct: 403 NAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKK 462
Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
D+G+ P +HY MVD+LGRAG+LN+A +FI++MPI+P V+G++LGAC+IH NV+L E
Sbjct: 463 DYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGE 522
Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
AA +F L+ ++ G +V+L+NIYA++ + ++R +M++ G++K G +++EI N+V
Sbjct: 523 KAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEV 582
Query: 592 HTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------------FPF 631
H+F +G S PQ++ YS L L+D IR GY PD N
Sbjct: 583 HSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNSIHDVEDDVKVQLLNTHSEKLAI 642
Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
FGLLN+ G+ I I+KNLRVCGDCH ATK+IS VTGREIIVRD HRFH FKDG CSCGD
Sbjct: 643 AFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGD 702
Query: 692 YW 693
YW
Sbjct: 703 YW 704
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488543|ref|XP_002278038.2| PREDICTED: uncharacterized protein LOC100244618 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 273/425 (64%), Positives = 328/425 (77%), Gaps = 5/425 (1%)
Query: 45 TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
CI+ IKQC TL++LK+LHA L+S + H L T+L++QYASLGSISHA++LFS+ S
Sbjct: 469 NCIALIKQCVTLEALKSLHASILKSHLHPH----LCTSLIAQYASLGSISHAYALFST-S 523
Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
S ++FLWN +IRAF + SL+LY++M +L I FTFPF+LKACG L D E G
Sbjct: 524 HSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGA 583
Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
+ H V GY SDVFV NSL+AMYG+ G D RQ+F+ MPERNVV+WSS+ GAYA NG
Sbjct: 584 RAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNG 643
Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
YEEGLLLF RM++EGI PNR I+NAMAC+ + EADD CRVV+DNGLD DQS+QNAAM
Sbjct: 644 RYEEGLLLFWRMLNEGIAPNRGSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAM 703
Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
MYARCGR+D+ARRFF GIL+KDLV+WTSMIEAY QADLP+ ALE+++QM L ++PDSV
Sbjct: 704 GMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSV 763
Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
T L +I A S+LASFQ AR VHG+I F N +ALDTAV+DLYVKCG+L +ARK FDRM
Sbjct: 764 TLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRM 823
Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464
+N+ISWSTMISGYGMHGHGREAL LFDQMKA IKPDHI FV VLSACSH L E
Sbjct: 824 SARNLISWSTMISGYGMHGHGREALCLFDQMKASIKPDHIAFVMVLSACSHELLSMESNT 883
Query: 465 CFNSM 469
NS+
Sbjct: 884 SRNSI 888
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 276/672 (41%), Positives = 403/672 (59%), Gaps = 31/672 (4%)
Query: 50 IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
+++C L+SL + +HA L+S + +L L+S YA GS++ A +F + D
Sbjct: 103 LQECARLRSLEQGREVHAAILKSGI--QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDR 160
Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
++ W MI AFV Q + + Y M+ PDK TF +L A ++ G KV
Sbjct: 161 -NIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKV 219
Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
H + +G + VG SL+ MY KCG + + +FD++PE+NVVTW+ L YAQ G
Sbjct: 220 HMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQV 279
Query: 227 EEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
+ L L ++M + PN++ IL + V R ++ +G + + NA
Sbjct: 280 DVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNAL 339
Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
+ MY +CG + AR+ F + ++D+V+WT+M+ YAQ EA++++R+M + + PD
Sbjct: 340 ITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDK 399
Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
+TF + +CSS A Q+ +++H ++H + L +A+V +Y KCGS+ AR VF++
Sbjct: 400 MTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQ 459
Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
M ++NV++W+ MI+G HG REAL F+QMK IKPD +TF SVLSAC+H GL++EG
Sbjct: 460 MSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEG 519
Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
+ F SM D+G+ P EHY+C VD+LGRAG L EA I MP +P VWG+LL ACR
Sbjct: 520 RKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACR 579
Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
IHS+VE E AA+ + LD ++ G YV LSNIYA++G+ +A ++R +M++R V K G
Sbjct: 580 IHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQ 639
Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------- 629
+ IE+ KVH F D+S P+ + Y+EL KL ++I+ +GY PD F
Sbjct: 640 SWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQT 699
Query: 630 --------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
+GL+ + PG+ IRI KNLRVCGDCHTA+KFISKV GREII RDAHRFHH
Sbjct: 700 LCSHSERLAITYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHH 759
Query: 682 FKDGTCSCGDYW 693
F DG CSCGD+W
Sbjct: 760 FVDGVCSCGDFW 771
|
Source: Funaria hygrometrica Species: Funaria hygrometrica Genus: Funaria Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula] gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 275/635 (43%), Positives = 394/635 (62%), Gaps = 41/635 (6%)
Query: 98 SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
S+F D ++ WN +I F + ++L ++ MR+L ++P++ TFP +K+C L
Sbjct: 40 SMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSL 99
Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
D+ G ++H+ A GY SD+FV ++LI MY KCG ++ R+LFDE+PERNVV+W+S+
Sbjct: 100 YDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMI 159
Query: 218 GAYAQNGCYEEGLLLFKR--MMDE--------------GIRPNRVVILNAMACVRKVSEA 261
Y QN E + LFK ++DE + V+ A CV+ V+E
Sbjct: 160 SGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTEC 219
Query: 262 DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
V + V G + ++ N M YA+CG + ++R+ F+G+ D+ SW S+I YAQ
Sbjct: 220 --VHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQN 277
Query: 322 DLPLEALEVYRQMILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
L +EA ++ M+ R V ++VT V+ AC+ + Q + +H ++ L + L +
Sbjct: 278 GLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVV 337
Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALI 439
T++VD+Y KCG + ARK FDR+K+KNV SW+ M++GYGMHGHG+EA+ +F +M + I
Sbjct: 338 GTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGI 397
Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
KP++ITFVSVL+ACSHAGL+ EGW FN M +F V P EHY+CMVD+LGRAG L EA
Sbjct: 398 KPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAY 457
Query: 500 EFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559
I+ M ++PD VWGSLLGACRIH NVEL E++A+ LF LD N G YV+LSNIYA +G
Sbjct: 458 GLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAG 517
Query: 560 KRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIR 619
+ + R+R LMK G+ K G++++E K +VH F+ GD+ PQ E Y L +L +++
Sbjct: 518 RWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQ 577
Query: 620 REGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHT 658
GY P++ FG++NS PGS I+I KNLR+CGDCH
Sbjct: 578 EVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHF 637
Query: 659 ATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
A K ISK+ REI++RD+ RFHHFKDG CSCGDYW
Sbjct: 638 AIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 265/630 (42%), Positives = 397/630 (63%), Gaps = 34/630 (5%)
Query: 98 SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
+LF+ D ++F WN +I + +L+ ++ MR+L + P++ TFP +K+C L
Sbjct: 106 TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 165
Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
D+ G + H+ A+ G+ D+FV ++L+ MY KCG + R LFDE+ RN+V+W+S+
Sbjct: 166 LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 225
Query: 218 GAYAQNGCYEEGLLLFKRMM--------DEGIRPNRVVILNAMACVRKVSE---ADDVCR 266
Y QN LLLFK + D + + + +++ ++ +VSE + V
Sbjct: 226 TGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHG 285
Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
++ G + D ++N M YA+CG + ++RR F+G+ +D++SW S+I YAQ + E
Sbjct: 286 FLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTE 345
Query: 327 ALEVYRQMILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
++E++ +M+ + ++VT V+ AC+ S + + +H +I L + + + T+++
Sbjct: 346 SMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSII 405
Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHI 444
D+Y KCG + ARK FDRM++KNV SWS M++GYGMHGH +EAL +F +M A +KP++I
Sbjct: 406 DMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYI 465
Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
TFVSVL+ACSHAGL++EGW F +M +F V P EHY CMVD+LGRAG L EA + I+
Sbjct: 466 TFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKG 525
Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
M +RPD VWG+LLGACR+H NV+L E++A+ LF+LD +N G YV+LSNIYA +G+ +
Sbjct: 526 MKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDV 585
Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
R+R LMK G+ K G ++++IK +VH F+ GDR PQ E Y L KL +++ GY
Sbjct: 586 ERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYV 645
Query: 625 PDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFI 663
PD+ FG++N+ PG+ I I KNLRVCGDCHTA KFI
Sbjct: 646 PDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFI 705
Query: 664 SKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
SK+ REI+VRD+ RFHHF+DG CSCGDYW
Sbjct: 706 SKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 270/642 (42%), Positives = 403/642 (62%), Gaps = 25/642 (3%)
Query: 76 DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
++F +T +V+ YA + A+ +F + + DL WN +I + N +L+L +M
Sbjct: 209 NVFAMTGVVNMYAKCRLVEEAYKMFDRMPER-DLVCWNTIISGYAQNGFGKTALELVLRM 267
Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
+E PD T +L A + + G +H ++ +G+ S V V +L+ MY KCG V
Sbjct: 268 QEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSV 327
Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC 254
R +FD M + VV+W+S+ Y QNG + +F++MMDE + V ++ A+ AC
Sbjct: 328 GTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHAC 387
Query: 255 --VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
+ V + V +++ L D S+ N+ + MY++C R+D+A FE + +K LVSW
Sbjct: 388 ADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWN 447
Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
+MI YAQ EA++ + +M L+ + PDS T + VI A + L+ QA+ +HG++I
Sbjct: 448 AMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRT 507
Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
L + + TA+VD+Y KCG++ ARK+FD M +++V +W+ MI GYG HG G+ AL LF
Sbjct: 508 CLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELF 567
Query: 433 DQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
++MK +IKP+ +TF+ VLSACSH+GL++EG++ F SM +D+G+ P +HY MVD+LGR
Sbjct: 568 EKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGR 627
Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
A +LNEA +FI++MPI P V+G++LGACRIH NVEL E AA +FDLD ++ G +V+L
Sbjct: 628 ANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLL 687
Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
+NIYA++ + R+R M+++G++K G +V+E++N+VHTF +G S PQ + Y+ L
Sbjct: 688 ANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFL 747
Query: 612 AKLMDRIRREGYTPDLN--------------------FPFVFGLLNSGPGSAIRIKKNLR 651
L +RI+ GY PD N F LLN+ PG+ I ++KNLR
Sbjct: 748 ETLGNRIKAAGYMPDTNSVHDVEDVVKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLR 807
Query: 652 VCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
VCGDCH ATK+IS VT REIIVRD RFHHFKDGTCSCGDYW
Sbjct: 808 VCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens] gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 276/673 (41%), Positives = 399/673 (59%), Gaps = 32/673 (4%)
Query: 50 IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
+++C L+SL + +HA L+S + +L L+S YA GS++ A +F S+ D
Sbjct: 54 LQECARLRSLEQGREVHAAILKSGI--QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDR 111
Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
++ W MI AFV + + + Y M+ PDK TF +L A ++ G KV
Sbjct: 112 -NIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKV 170
Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
H + V++G + VG SL+ MY KCG + R +FD +PE+NVVTW+ L YAQ G
Sbjct: 171 HMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQV 230
Query: 227 EEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
+ L L + M + PN++ IL + V R ++ +G + + N+
Sbjct: 231 DVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSL 290
Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
+ MY +CG ++ AR+ F + ++D+V+WT+M+ YAQ EA+ ++R+M + + PD
Sbjct: 291 ITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDK 350
Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
+TF V+ +CSS A Q+ + +H ++H + L +A+V +Y KCGS+ A VF++
Sbjct: 351 MTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQ 410
Query: 404 MKQKNVISWSTMISGY-GMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDE 461
M ++NV++W+ +I+G HG REAL FDQMK IKPD +TF SVLSAC+H GL++E
Sbjct: 411 MSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEE 470
Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
G + F SM D+G+ P EHY+C VD+LGRAG L EA I MP P VWG+LL AC
Sbjct: 471 GRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSAC 530
Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
R+HS+VE E AA+ + LD ++ G YV LS+IYA++G+ +A ++R +M++R V K G
Sbjct: 531 RVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPG 590
Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------ 629
+ IE+ KVH F D+S P++E Y EL KL ++I+ GY PD F
Sbjct: 591 QSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKER 650
Query: 630 ---------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
+GL+ + PG IRI KNLRVCGDCHTATKFISKV GREII RDA RFH
Sbjct: 651 ILFSHSERLAITYGLMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFH 710
Query: 681 HFKDGTCSCGDYW 693
HF DG CSCGD+W
Sbjct: 711 HFADGVCSCGDFW 723
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 693 | ||||||
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.826 | 0.708 | 0.390 | 1.3e-141 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.759 | 0.798 | 0.404 | 4.7e-133 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.834 | 0.649 | 0.376 | 6.9e-130 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.834 | 0.663 | 0.386 | 1.6e-128 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.834 | 0.702 | 0.355 | 1.2e-123 | |
| TAIR|locus:2077878 | 685 | AT3G08820 "AT3G08820" [Arabido | 0.849 | 0.859 | 0.355 | 6.5e-123 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.509 | 0.558 | 0.388 | 3.5e-121 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.793 | 0.694 | 0.350 | 4e-121 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.848 | 0.552 | 0.348 | 5.1e-121 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.787 | 0.548 | 0.365 | 1.4e-118 |
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1144 (407.8 bits), Expect = 1.3e-141, Sum P(2) = 1.3e-141
Identities = 227/582 (39%), Positives = 364/582 (62%)
Query: 60 KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
K +H ++S F DLF +T L + YA ++ A +F + + DL WN ++ +
Sbjct: 155 KEIHGLLVKSGF--SLDLFAMTGLENMYAKCRQVNEARKVFDRMPER-DLVSWNTIVAGY 211
Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
N +L++ M E ++ P T VL A LR I G ++H A+ SG+ S V
Sbjct: 212 SQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLV 271
Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
+ +L+ MY KCG ++ RQLFD M ERNVV+W+S+ AY QN +E +L+F++M+DE
Sbjct: 272 NISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDE 331
Query: 240 GIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
G++P V ++ A+ AC + + + ++ V+ GLD + S+ N+ + MY +C +D A
Sbjct: 332 GVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTA 391
Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
F + ++ LVSW +MI +AQ P++AL + QM R V PD+ T++ VI A + L
Sbjct: 392 ASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAEL 451
Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
+ A+ +HG+++ L + + TA+VD+Y KCG++M AR +FD M +++V +W+ MI
Sbjct: 452 SITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMI 511
Query: 417 SGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
GYG HG G+ AL LF++M K IKP+ +TF+SV+SACSH+GL++ G +CF M ++ +
Sbjct: 512 DGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSI 571
Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
+HY MVD+LGRAG+LNEA +FI +MP++P V+G++LGAC+IH NV AE AA+
Sbjct: 572 ELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAE 631
Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
LF+L+ ++ G +V+L+NIY ++ + ++R M R+G++K G +++EIKN+VH+F
Sbjct: 632 RLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFF 691
Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFVFGLLN 637
+G + P ++ Y+ L KL+ I+ GY PD N V G+ N
Sbjct: 692 SGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNL--VLGVEN 731
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1078 (384.5 bits), Expect = 4.7e-133, Sum P(2) = 4.7e-133
Identities = 218/539 (40%), Positives = 338/539 (62%)
Query: 98 SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
+LF+ D D+F WN +I + +L ++ MR+L + P + +FP +KAC L
Sbjct: 30 TLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSL 89
Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
DI G + H+ A GY SD+FV ++LI MY CG+++ R++FDE+P+RN+V+W+S+
Sbjct: 90 FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMI 149
Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-------ACVRKVSEA--DDVCRVV 268
Y NG + + LFK ++ + + + L++M AC R ++ + + V
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209
Query: 269 VDNGLDLDQSLQNAAMVMYARCGR--MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
+ G D S+ N + YA+ G + +AR+ F+ I++KD VS+ S++ YAQ+ + E
Sbjct: 210 IKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE 269
Query: 327 ALEVYRQMILRRVLP-DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
A EV+R+++ +V+ +++T V+ A S + + + +H +I L + + + T+++
Sbjct: 270 AFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII 329
Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHI 444
D+Y KCG + ARK FDRMK KNV SW+ MI+GYGMHGH +AL LF M + ++P++I
Sbjct: 330 DMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYI 389
Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
TFVSVL+ACSHAGL EGW FN+M FGV P EHY CMVD+LGRAG L +A + I+R
Sbjct: 390 TFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQR 449
Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
M ++PD+ +W SLL ACRIH NVELAE++ LF+LD+ N G Y++LS+IYA +G+ +
Sbjct: 450 MKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDV 509
Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
R+R +MK RG+ K G +++E+ +VH F+ GD PQ E Y LA+L ++ GY
Sbjct: 510 ERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGY 568
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1032 (368.3 bits), Expect = 6.9e-130, Sum P(2) = 6.9e-130
Identities = 226/600 (37%), Positives = 355/600 (59%)
Query: 45 TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
T S++ + L K +HA+ LR + F++ LV+ Y LG ++ + L S
Sbjct: 207 TACSNLPMPEGLMMGKQVHAYGLRKGELNS---FIINTLVAMYGKLGKLASSKVLLGSFG 263
Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
DL WN ++ + N Q +L+ +M + PD+FT VL AC +L + G
Sbjct: 264 GR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 322
Query: 165 KVHKDAVDSGYWSD-VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
++H A+ +G + FVG++L+ MY C +V R++FD M +R + W+++ Y+QN
Sbjct: 323 ELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 382
Query: 224 GCYEEGLLLFKRMMDE-GIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSL 279
+E LLLF M + G+ N + + ACVR S + + VV GLD D+ +
Sbjct: 383 EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFV 442
Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM--ILR 337
QN M MY+R G++D+A R F + ++DLV+W +MI Y ++ +AL + +M + R
Sbjct: 443 QNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLER 502
Query: 338 RVL---------PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
+V P+S+T + ++ +C++L++ + + +H I L +A+ +A+VD+Y
Sbjct: 503 KVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMY 562
Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFV 447
KCG L +RKVFD++ QKNVI+W+ +I YGMHG+G+EA+ L M +KP+ +TF+
Sbjct: 563 AKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFI 622
Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
SV +ACSH+G++DEG F M D+GV P +HYAC+VD+LGRAG++ EA + + MP
Sbjct: 623 SVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPR 682
Query: 508 RPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
+ AG W SLLGA RIH+N+E+ E+AA+ L L+ YV+L+NIY+S+G +A
Sbjct: 683 DFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATE 742
Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
+R MK +GV+K G + IE ++VH FVAGD S PQ+E L L +R+R+EGY PD
Sbjct: 743 VRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPD 802
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|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1055 (376.4 bits), Expect = 1.6e-128, Sum P(2) = 1.6e-128
Identities = 227/587 (38%), Positives = 347/587 (59%)
Query: 45 TCIS-SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
+C+S S +++ + LH F L+S F + + +LV+ Y + A +F +
Sbjct: 199 SCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG--NSLVAFYLKNQRVDSARKVFDEM 256
Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
++ D+ WN +I +V N ++ L ++ QM I D T V C R I G
Sbjct: 257 TER-DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 315
Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
VH V + + + N+L+ MY KCG +D + +F EM +R+VV+++S+ YA+
Sbjct: 316 RAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYARE 375
Query: 224 GCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
G E + LF+ M +EGI P+ +LN A R + E V + +N L D +
Sbjct: 376 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS 435
Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL-RRV 339
NA M MYA+CG M A F + KD++SW ++I Y++ EAL ++ ++ +R
Sbjct: 436 NALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRF 495
Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
PD T V+ AC+SL++F + R +HG I+ + + ++VD+Y KCG+L+ A
Sbjct: 496 SPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHM 555
Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGL 458
+FD + K+++SW+ MI+GYGMHG G+EA+ LF+QM+ A I+ D I+FVS+L ACSH+GL
Sbjct: 556 LFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGL 615
Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
+DEGW FN M + + P EHYAC+VDML R G L +A FIE MPI PDA +WG+LL
Sbjct: 616 VDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALL 675
Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
CRIH +V+LAE A+ +F+L+ EN G YV+++NIYA + K + R+R + +RG++K
Sbjct: 676 CGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRK 735
Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP 625
G + IEIK +V+ FVAGD S P+TE + L K+ R+ EGY+P
Sbjct: 736 NPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSP 782
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 989 (353.2 bits), Expect = 1.2e-123, Sum P(2) = 1.2e-123
Identities = 212/597 (35%), Positives = 348/597 (58%)
Query: 42 DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
D T S +K C+T+ +H L+ F D+++ +L+ Y+ ++ +A LF
Sbjct: 152 DYRTFPSVLKACRTVIDGNKIHCLALKFGFMW--DVYVAASLIHLYSRYKAVGNARILFD 209
Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
+ D+ WN MI + + +L L +R +D T +L AC D
Sbjct: 210 EMPVR-DMGSWNAMISGYCQSGNAKEALTLSNGLRAMD----SVTVVSLLSACTEAGDFN 264
Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
GV +H ++ G S++FV N LI +Y + GR+ C+++FD M R++++W+S+ AY
Sbjct: 265 RGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYE 324
Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV--CRVV----VDNGLDL 275
N + LF+ M I+P+ + +++ +A + +S+ D+ CR V + G L
Sbjct: 325 LNEQPLRAISLFQEMRLSRIQPDCLTLIS-LASI--LSQLGDIRACRSVQGFTLRKGWFL 381
Query: 276 -DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
D ++ NA +VMYA+ G +D AR F + N D++SW ++I YAQ EA+E+Y M
Sbjct: 382 EDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIM 441
Query: 335 ILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
+ + T++ V+ ACS + +Q +HG ++ L + + T++ D+Y KCG
Sbjct: 442 EEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGR 501
Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSA 452
L A +F ++ + N + W+T+I+ +G HGHG +A+ LF +M +KPDHITFV++LSA
Sbjct: 502 LEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSA 561
Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
CSH+GL+DEG CF M D+G+ P +HY CMVDM GRAG+L A +FI+ M ++PDA
Sbjct: 562 CSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDAS 621
Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572
+WG+LL ACR+H NV+L ++A++ LF+++ E+ G +V+LSN+YAS+GK + IR++
Sbjct: 622 IWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAH 681
Query: 573 RRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF 629
+G++K G + +E+ NKV F G+++ P E Y EL L +++ GY PD F
Sbjct: 682 GKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRF 738
|
|
| TAIR|locus:2077878 AT3G08820 "AT3G08820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1002 (357.8 bits), Expect = 6.5e-123, Sum P(2) = 6.5e-123
Identities = 216/608 (35%), Positives = 350/608 (57%)
Query: 30 SASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
SA+S QQ + T IS C T+ LK +H + HHD FLV L+ +
Sbjct: 8 SATSKVQQIK-----TLISVA--C-TVNHLKQIHVSLINHHL--HHDTFLVNLLLKRTLF 57
Query: 90 LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
+++ LFS ++FL+N +I FV+N F +L L+ +R+ + FTFP
Sbjct: 58 FRQTKYSYLLFSHTQFP-NIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPL 116
Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
VLKAC + G+ +H V G+ DV SL+++Y GR++ +LFDE+P+R+
Sbjct: 117 VLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRS 176
Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADD---VC 265
VVTW++L Y +G + E + LFK+M++ G++P+ I+ + ACV V + D +
Sbjct: 177 VVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVH-VGDLDSGEWIV 235
Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
+ + + + + ++ + +YA+CG+M+ AR F+ ++ KD+V+W++MI+ YA P
Sbjct: 236 KYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPK 295
Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII-HCFLGNQLALDTAV 384
E +E++ QM+ + PD + +G + +C+SL + +I H FL N L + A+
Sbjct: 296 EGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTN-LFMANAL 354
Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDH 443
+D+Y KCG++ +VF MK+K+++ + ISG +GH + + +F Q + L I PD
Sbjct: 355 IDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDG 414
Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
TF+ +L C HAGLI +G FN++ + + EHY CMVD+ GRAG L++A I
Sbjct: 415 STFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLIC 474
Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
MP+RP+A VWG+LL CR+ + +LAE K L L+ N G YV LSNIY+ G+ E
Sbjct: 475 DMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDE 534
Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
A +R +M ++G+KKI G++ IE++ KVH F+A D+S P ++ Y++L L + +R G+
Sbjct: 535 AAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGF 594
Query: 624 TPDLNFPF 631
P F F
Sbjct: 595 VPTTEFVF 602
|
|
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 3.5e-121, Sum P(3) = 3.5e-121
Identities = 139/358 (38%), Positives = 230/358 (64%)
Query: 276 DQSL-QNAAMVM-YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
++SL + AM+ YA+ G ++ AR F+ + +D+VSW MI+ YAQ P +AL ++++
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248
Query: 334 MILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
++ + PD +T + + ACS + + + R +H + + + + T ++D+Y KCG
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCG 308
Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVL 450
SL A VF+ +K++++W+ MI+GY MHG+ ++AL LF++M+ + ++P ITF+ L
Sbjct: 309 SLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTL 368
Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
AC+HAGL++EG F SM +++G+ P+ EHY C+V +LGRAG+L A E I+ M + D
Sbjct: 369 QACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDAD 428
Query: 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570
+ +W S+LG+C++H + L + A+ L L+ +N G YV+LSNIYAS G ++R L
Sbjct: 429 SVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNL 488
Query: 571 MKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN 628
MK +G+ K G + IEI+NKVH F AGDR +++ Y+ L K+ +RI+ GY P+ N
Sbjct: 489 MKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTN 546
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 4.0e-121, Sum P(2) = 4.0e-121
Identities = 194/553 (35%), Positives = 311/553 (56%)
Query: 76 DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
+L L +N+V Y + A +F + + D LWN MI + N + S+Q++ +
Sbjct: 153 ELLLGSNIVKMYFKFWRVEDARKVFDRMPEK-DTILWNTMISGYRKNEMYVESIQVFRDL 211
Query: 136 -RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
E D T +L A L+++ G+++H A +G +S +V I++Y KCG+
Sbjct: 212 INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGK 271
Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
+ + LF E + ++V ++++ Y NG E L LFK +M G R +++ +
Sbjct: 272 IKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPV 331
Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
+ + + + S+ A +Y++ ++ AR+ F+ K L SW +M
Sbjct: 332 SGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAM 391
Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
I Y Q L +A+ ++R+M P+ VT ++ AC+ L + + VH ++
Sbjct: 392 ISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDF 451
Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
+ + + TA++ +Y KCGS+ AR++FD M +KN ++W+TMISGYG+HG G+EAL +F +
Sbjct: 452 ESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYE 511
Query: 435 M-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
M + I P +TF+ VL ACSHAGL+ EG E FNSM+ +G P +HYACMVD+LGRAG
Sbjct: 512 MLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAG 571
Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
L A +FIE M I P + VW +LLGACRIH + LA ++ LF+LD +N G +V+LSN
Sbjct: 572 HLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSN 631
Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
I+++ +A +R K+R + K G+T+IEI H F +GD+S PQ + Y +L K
Sbjct: 632 IHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEK 691
Query: 614 LMDRIRREGYTPD 626
L ++R GY P+
Sbjct: 692 LEGKMREAGYQPE 704
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 985 (351.8 bits), Expect = 5.1e-121, Sum P(2) = 5.1e-121
Identities = 210/603 (34%), Positives = 337/603 (55%)
Query: 42 DPETCISSIKQCQ---TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
D T S + C TL + LHA+T + F ++ + L++ YA I A
Sbjct: 388 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKI--EGALLNLYAKCADIETALD 445
Query: 99 LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
F ++ LWNVM+ A+ S +++ QM+ +I P+++T+P +LK C L
Sbjct: 446 YFLETEVE-NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 504
Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
D+E G ++H + + + + +V + LI MY K G++D + ++VV+W+++
Sbjct: 505 DLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIA 564
Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLDL 275
Y Q ++ L F++M+D GIR + V + NA+ AC ++ + E + +G
Sbjct: 565 GYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSS 624
Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
D QNA + +Y+RCG+++ + FE D ++W +++ + Q+ EAL V+ +M
Sbjct: 625 DLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMN 684
Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
+ ++ TF ++A S A+ +Q + VH +I ++ + A++ +Y KCGS+
Sbjct: 685 REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSIS 744
Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS 454
A K F + KN +SW+ +I+ Y HG G EAL FDQM + ++P+H+T V VLSACS
Sbjct: 745 DAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 804
Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
H GL+D+G F SM ++G++P+PEHY C+VDML RAG L+ A+EFI+ MPI+PDA VW
Sbjct: 805 HIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVW 864
Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
+LL AC +H N+E+ E AA L +L+ E+ YV+LSN+YA S K + R MK +
Sbjct: 865 RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEK 924
Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFVFG 634
GVKK G + IE+KN +H+F GD++ P + + L R GY D F
Sbjct: 925 GVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDC-----FS 979
Query: 635 LLN 637
LLN
Sbjct: 980 LLN 982
|
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| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 965 (344.8 bits), Expect = 1.4e-118, Sum P(2) = 1.4e-118
Identities = 203/556 (36%), Positives = 325/556 (58%)
Query: 83 LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
LV+ YA GSI+ A +F ++D D WN MI N F +++ Y MR DI P
Sbjct: 355 LVNMYAKCGSIADARRVFYFMTDK-DSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILP 413
Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
FT L +C L+ + G ++H +++ G +V V N+L+ +Y + G ++ CR++F
Sbjct: 414 GSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIF 473
Query: 203 DEMPERNVVTWSSLTGAYAQNG-CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEA 261
MPE + V+W+S+ GA A++ E ++ F G + NR+ + ++ V +S
Sbjct: 474 SSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFG 533
Query: 262 D---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK-DLVSWTSMIEA 317
+ + + + N + + + +NA + Y +CG MD + F + + D V+W SMI
Sbjct: 534 ELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISG 593
Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
Y +L +AL++ M+ DS + V+ A +S+A+ ++ VH + L +
Sbjct: 594 YIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESD 653
Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK- 436
+ + +A+VD+Y KCG L +A + F+ M +N SW++MISGY HG G EAL LF+ MK
Sbjct: 654 VVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKL 713
Query: 437 -ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
PDH+TFV VLSACSHAGL++EG++ F SM +G+APR EH++CM D+LGRAG+L
Sbjct: 714 DGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGEL 773
Query: 496 NEAREFIERMPIRPDAGVWGSLLGAC-RIHSN-VELAEMAAKALFDLDAENPGRYVILSN 553
++ +FIE+MP++P+ +W ++LGAC R + EL + AA+ LF L+ EN YV+L N
Sbjct: 774 DKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGN 833
Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
+YA+ G+ + + R MK VKK G++ + +K+ VH FVAGD+S P ++ Y +L +
Sbjct: 834 MYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKE 893
Query: 614 LMDRIRREGYTPDLNF 629
L ++R GY P F
Sbjct: 894 LNRKMRDAGYVPQTGF 909
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 693 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-167 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-161 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-81 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-62 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-39 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-19 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 501 bits (1292), Expect = e-167
Identities = 235/656 (35%), Positives = 366/656 (55%), Gaps = 29/656 (4%)
Query: 60 KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
+ +HA +R F D+ +V L++ Y G + A +F + D WN MI +
Sbjct: 207 REVHAHVVR--FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR-DCISWNAMISGY 263
Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
+N + L+L+ MREL ++PD T V+ AC L D G ++H V +G+ DV
Sbjct: 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323
Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
V NSLI MY G ++F M ++ V+W+++ Y +NG ++ L + M +
Sbjct: 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383
Query: 240 GIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
+ P+ + I L+A AC+ + + + GL + NA + MY++C +D A
Sbjct: 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443
Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
F I KD++SWTS+I + EAL +RQM+L + P+SVT + + AC+ +
Sbjct: 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARI 502
Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
+ + +H ++ +G L A++DLYV+CG + +A F+ +K+V+SW+ ++
Sbjct: 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILL 561
Query: 417 SGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
+GY HG G A+ LF++M ++ + PD +TF+S+L ACS +G++ +G E F+SM + +
Sbjct: 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621
Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
P +HYAC+VD+LGRAGKL EA FI +MPI PD VWG+LL ACRIH +VEL E+AA+
Sbjct: 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681
Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
+F+LD + G Y++L N+YA +GK E R+R M+ G+ G + +E+K KVH F+
Sbjct: 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFL 741
Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYT--PDLNFP------------------FVFGL 635
D S PQ + + L ++++ G + FGL
Sbjct: 742 TDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGL 801
Query: 636 LNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
+N+ PG I + KNL +C +CH KFISK+ REI VRD +FHHFKDG CSCGD
Sbjct: 802 INTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 481 bits (1240), Expect = e-161
Identities = 225/573 (39%), Positives = 331/573 (57%), Gaps = 25/573 (4%)
Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
T+ +++AC L+ I V+ SG+ D ++ N ++ M+ KCG + R+LFDEM
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEAD 262
PERN+ +W ++ G G Y E LF+ M ++G VV+L A A +
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244
Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
+ V+ G+ D + A + MY++CG ++ AR F+G+ K V+W SM+ YA
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG 304
Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
EAL +Y +M V D TF +IR S LA + A+ H +I + +T
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKP 441
A+VDLY K G + AR VFDRM +KN+ISW+ +I+GYG HG G +A+ +F++M A + P
Sbjct: 365 ALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424
Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
+H+TF++VLSAC ++GL ++GWE F SM + + PR HYACM+++LGR G L+EA
Sbjct: 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484
Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561
I R P +P +W +LL ACRIH N+EL +AA+ L+ + E YV+L N+Y SSG++
Sbjct: 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544
Query: 562 IEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE 621
EA ++ +KR+G+ T IE+K + H+F +GDR PQ+ Y +L +LM I
Sbjct: 545 AEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEY 604
Query: 622 GYTPDLNF--PFV-------------------FGLLNSGPGSAIRIKKNLRVCGDCHTAT 660
GY + N P V FGL+N+ + ++I ++ R+C DCH
Sbjct: 605 GYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVI 664
Query: 661 KFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
KFI+ VT REI+VRDA RFHHFK G CSCGDYW
Sbjct: 665 KFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 274 bits (701), Expect = 9e-81
Identities = 137/419 (32%), Positives = 223/419 (53%), Gaps = 5/419 (1%)
Query: 83 LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
++S + G + HA+ +F + + DLF WNV++ + FD +L LY +M + P
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPER-DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185
Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
D +TFP VL+ CG + D+ G +VH V G+ DV V N+LI MY KCG V R +F
Sbjct: 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245
Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE-- 260
D MP R+ ++W+++ Y +NG EGL LF M + + P+ + I + ++ + +
Sbjct: 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305
Query: 261 -ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
++ VV G +D S+ N+ + MY G A + F + KD VSWT+MI Y
Sbjct: 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365
Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
+ LP +ALE Y M V PD +T V+ AC+ L +H + L + +
Sbjct: 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425
Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALI 439
+ A++++Y KC + A +VF + +K+VISW+++I+G ++ EAL F QM +
Sbjct: 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485
Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
KP+ +T ++ LSAC+ G + G E +LR G+ ++D+ R G++N A
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYA 543
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 221 bits (564), Expect = 9e-62
Identities = 141/493 (28%), Positives = 241/493 (48%), Gaps = 31/493 (6%)
Query: 93 ISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLK 152
+S A S SS DS N +RA + Q +++L+L M+EL + D+ + + +
Sbjct: 41 LSVAASSSSSTHDS------NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR 94
Query: 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT 212
C + R +E G +V A+ S V +GN++++M+ + G + +F +MPER++ +
Sbjct: 95 LCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFS 154
Query: 213 WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVV 269
W+ L G YA+ G ++E L L+ RM+ G+RP+ +L + ++ +V VV
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214
Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
G +LD + NA + MY +CG + AR F+ + +D +SW +MI Y + LE LE
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLE 274
Query: 330 VYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
++ M V PD +T VI AC L + R +HG ++ +++ +++ +Y+
Sbjct: 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334
Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVS 448
GS A KVF RM+ K+ +SW+ MISGY +G +AL + M+ + PD IT S
Sbjct: 335 SLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394
Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC----MVDMLGRAGKLNEAREFIER 504
VLSAC+ G +D G L + Y +++M + +++A E
Sbjct: 395 VLSACACLGDLDVG-----VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449
Query: 505 MPIRPDAGVWGSLLGACRI-HSNVELAEMAAKALFDLDAENPGRYVILSNIYA------- 556
+P D W S++ R+ + E + L L P +++ + A
Sbjct: 450 IP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL---KPNSVTLIAALSACARIGAL 505
Query: 557 SSGKRIEANRIRA 569
GK I A+ +R
Sbjct: 506 MCGKEIHAHVLRT 518
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 1e-39
Identities = 89/304 (29%), Positives = 152/304 (50%), Gaps = 13/304 (4%)
Query: 76 DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
D +++ ++ + G + A LF + + +L W +I VD + + L+ +M
Sbjct: 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFALFREM 215
Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
E + + TF +L+A L G ++H + +G D FV +LI MY KCG +
Sbjct: 216 WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275
Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAM 252
+ R +FD MPE+ V W+S+ YA +G EE L L+ M D G+ ++ +++
Sbjct: 276 EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335
Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV-MYARCGRMDMARRFFEGILNKDLVSW 311
+ + + A ++ G LD + N A+V +Y++ GRM+ AR F+ + K+L+SW
Sbjct: 336 SRLALLEHAKQAHAGLIRTGFPLD-IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW 394
Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC--SSLAS-----FQQART 364
++I Y +A+E++ +MI V P+ VTFL V+ AC S L+ FQ
Sbjct: 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
Query: 365 VHGI 368
H I
Sbjct: 455 NHRI 458
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-25
Identities = 54/196 (27%), Positives = 102/196 (52%), Gaps = 4/196 (2%)
Query: 60 KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
+ LH L++ D F+ L+ Y+ G I A +F + + WN M+ +
Sbjct: 244 QQLHCCVLKTGVVG--DTFVSCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGY 300
Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
+ + +L LY +MR+ ++ D+FTF +++ L +E + H + +G+ D+
Sbjct: 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360
Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
+L+ +Y K GR++ R +FD MP +N+++W++L Y +G + + +F+RM+ E
Sbjct: 361 VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 240 GIRPNRVVILNAM-AC 254
G+ PN V L + AC
Sbjct: 421 GVAPNHVTFLAVLSAC 436
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 91.5 bits (227), Expect = 5e-19
Identities = 67/238 (28%), Positives = 110/238 (46%), Gaps = 10/238 (4%)
Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP---DSVTFLGVIRACS 354
R + + K VS S IE EALE++ IL P + T+ ++ AC
Sbjct: 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFE--ILEAGCPFTLPASTYDALVEACI 134
Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
+L S + + V+ + + V+ ++VKCG L+ AR++FD M ++N+ SW T
Sbjct: 135 ALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGT 194
Query: 415 MISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
+I G G+ REA LF +M + + TFV +L A + G G + +L+
Sbjct: 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254
Query: 474 GVAPRPEHYAC-MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
V +C ++DM + G + +AR + MP + W S+L +H E A
Sbjct: 255 VVGDT--FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA-WNSMLAGYALHGYSEEA 309
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-15
Identities = 39/114 (34%), Positives = 50/114 (43%), Gaps = 28/114 (24%)
Query: 592 HTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------------PFVFGLLNS 638
++GD S P + +L RI+ EG P+ LL S
Sbjct: 9 KKTLSGDGSHPTS------KEELFQRIKVEGVVPETKEIGHDVDAEEFRDNGIKGKLLAS 62
Query: 639 ---------GPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFK 683
G + IK R+CGDCH ++I+K TGREIIVRD RFHHFK
Sbjct: 63 HAEKQALAYGLLTTRIIKVLKRMCGDCHEFFRYIAKYTGREIIVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-10
Identities = 70/313 (22%), Positives = 119/313 (38%), Gaps = 85/313 (27%)
Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM--ARRFF----EGILNKDLV 309
R V EA +++ + +L M+M D+ A R E L D
Sbjct: 420 RAVKEAFRFAKLI------RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK 473
Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
+T++I A++ EV+ +M+ V + TF +I C+ +A +GI
Sbjct: 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI- 532
Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
M ++ V K V+ ++ +IS G G A
Sbjct: 533 -------------------------MRSKNV----KPDRVV-FNALISACGQSGAVDRAF 562
Query: 430 FLFDQMKAL---IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY---- 482
+ +MKA I PDHIT +++ AC++AG +D E + M+ ++ + PE Y
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ-MIHEYNIKGTPEVYTIAV 621
Query: 483 -AC------------------------------MVDMLGRAGKLNEAREFIERMP---IR 508
+C +VD+ G AG L++A E ++ I+
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681
Query: 509 PDAGVWGSLLGAC 521
+ SL+GAC
Sbjct: 682 LGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 9e-09
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSH 455
+V++++T+I GY G EAL LF++MK IKP+ T+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 89/386 (23%), Positives = 157/386 (40%), Gaps = 59/386 (15%)
Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
NP TF ++ C +DI+ ++V + ++G +D + +LI+ K G+VD +
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
Query: 201 LFDEMP----ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM--AC 254
+F EM E NV T+ +L A+ G + + M + ++P+RVV NA+ AC
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV-FNALISAC 552
Query: 255 VRK--VSEADDVCRVVVDNG-----LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
+ V A D V+ + +D D A M A G++D A+ ++ I +
Sbjct: 553 GQSGAVDRAFD---VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 308 LVS----WTSMIEAYAQ-ADLPLEALEVYRQMILRRVLPDSVTFLGVI-------RACSS 355
+ +T + + +Q D AL +Y M + V PD V F ++ +
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDF-ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 356 LASFQQARTVH---GIIIH-------CFLGN-QLALDTAVVDLYVKCGSLMHARKVFDRM 404
Q AR G + + N + AL +LY S +
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL-----ELYEDIKS----------I 713
Query: 405 KQKNVIS-WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
K + +S + +I+ +AL + +MK L + P+ IT+ +L A D G
Sbjct: 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
Query: 463 WECFNSMLRDFGVAPRPEHYACMVDM 488
+ + D G+ P C+ +
Sbjct: 774 LDLLSQAKED-GIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 4e-08
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
D+V++ ++I+ Y + EAL+++ +M R + P+ T+ +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-06
Identities = 9/47 (19%), Positives = 26/47 (55%)
Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
D+ +N +I + + + +L+L+ +M++ I P+ +T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 30/142 (21%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG 174
+++A + Q DR+ ++Y + E +I + + +C D +F + ++ D G
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644
Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV----VTWSSLTGAYAQNGCYEEGL 230
D ++L+ + G G +D ++ + ++ + V++SSL GA + +++ L
Sbjct: 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704
Query: 231 LLFKRMMDEGIRPNRVVILNAM 252
L++ + +RP V +NA+
Sbjct: 705 ELYEDIKSIKLRPT-VSTMNAL 725
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPER----NVVTWSSLTGAYAQ 222
DV N+LI Y K G+V+ +LF+EM +R NV T+S L +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 3e-05
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMA 253
+VVT+++L Y + G EE L LF M GI+PN ++++ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-05
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN 244
VT+++L + G EE L LFK M + GI P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 410 ISWSTMISGYGMHGHGREALFLFDQMK 436
++++++ISGY G EAL LF +MK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
VT++SL Y + G EE L LFK M ++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
V++ S+I Y +A EALE++++M + V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 3e-04
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQK----NVISWSTMISGY 419
++D Y K G + A K+F+ MK++ NV ++S +I G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
+N +I + + +L+L+ +M+E I PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
V++ ++I+ +A EALE++++M R + PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 60/259 (23%), Positives = 102/259 (39%), Gaps = 49/259 (18%)
Query: 337 RRVLPDSVTFLGVIR------------ACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
+R + ++ F +IR C+S A V ++ L L T +
Sbjct: 419 QRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478
Query: 385 VDLYVKCGSLMHARKVFDRMK----QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-I 439
+ K G + +VF M + NV ++ +I G G +A + M++ +
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538
Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
KPD + F +++SAC +G +D R F V + +M +A
Sbjct: 539 KPDRVVFNALISACGQSGAVD----------RAFDV---------LAEM--KA------- 570
Query: 500 EFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE-NPGRYVILSNIYASS 558
E PI PD G+L+ AC V+ A+ + + + + + P Y I N +
Sbjct: 571 ---ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627
Query: 559 GKRIEANRIRALMKRRGVK 577
G A I MK++GVK
Sbjct: 628 GDWDFALSIYDDMKKKGVK 646
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 45/230 (19%), Positives = 94/230 (40%), Gaps = 14/230 (6%)
Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
N +I A + Q ++L++ ++M+ L + P+ T+ +L A D + G+ + A +
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782
Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG-AYAQNGCYEEGLL 231
G ++ + + + C + F++ S +G +N L+
Sbjct: 783 DGIKPNLVMCRCITGL---------CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833
Query: 232 LFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
+++ + G P V+ + C++ +A R++ + G+ D Q+ + G
Sbjct: 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG 893
Query: 292 RMDM-ARRFFEGILNKDLVSWTSMIEAYAQAD---LPLEALEVYRQMILR 337
D A E + +V S ++ D LP+ A EVY IL+
Sbjct: 894 EYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPVFAAEVYLLTILK 943
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKAL-IKPD 442
++++T+I G G EAL LF +MK I+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNV 210
NSLI+ Y K G+++ +LF EM E+ V
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 57/307 (18%), Positives = 128/307 (41%), Gaps = 24/307 (7%)
Query: 76 DLFLVTNLVSQYASLGSISHAFSLFSSVSDS---CDLFLWNVMIRAFVDNRQFDRSLQLY 132
D L T L+S A G + F +F + ++ ++ + +I Q ++ Y
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 133 AQMRELDINPDKFTFPFVLKACGYLRDIE--FGV----KVHKDAVDSGYWSDVFVGNSLI 186
MR ++ PD+ F ++ ACG ++ F V K +D + + VG +L+
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH---ITVG-ALM 586
Query: 187 AMYGKCGRVDVCRQLFDEMPERNV----VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
G+VD ++++ + E N+ ++ + +Q G ++ L ++ M +G++
Sbjct: 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646
Query: 243 PNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
P+ V +++ + +A ++ + G+ L ++ M + A
Sbjct: 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706
Query: 300 FEGI----LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
+E I L + + ++I A + + +ALEV +M + P+++T+ ++ A
Sbjct: 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766
Query: 356 LASFQQA 362
Sbjct: 767 KDDADVG 773
|
Length = 1060 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 693 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.66 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.62 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.59 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.54 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.51 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.5 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.47 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.47 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.47 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.46 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.45 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.44 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.42 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.39 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.39 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.39 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.37 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.33 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.33 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.32 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.29 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.24 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.23 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.23 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.22 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.21 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.19 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.15 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.14 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.12 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.09 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.08 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.08 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.06 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.06 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.05 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.02 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.01 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.01 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.0 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.0 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.98 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.92 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.88 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.87 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.86 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.85 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.82 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.8 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.76 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.73 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.73 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.69 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.68 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.67 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.67 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.66 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.62 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.62 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.62 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.61 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.59 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.58 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.54 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.54 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.52 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.51 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.49 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.49 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.47 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.47 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.46 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.42 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.41 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.38 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.37 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.36 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.34 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.33 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.33 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.32 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.32 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.28 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.28 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.27 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.14 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.11 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.11 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.11 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.1 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.09 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.05 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.0 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.97 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.95 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.94 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.9 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.87 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.83 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.78 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.76 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.74 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.73 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.72 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.71 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.68 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.68 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.65 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.64 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.63 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.58 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.56 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.55 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.5 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.49 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.49 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.47 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.44 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.4 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.4 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.4 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.39 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.39 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.34 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.26 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.26 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.18 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.18 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.18 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.12 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.12 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.1 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.09 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.06 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.06 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.06 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.06 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.04 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.03 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.03 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.98 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.93 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.83 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.83 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.83 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.82 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.81 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.8 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.79 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.76 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.76 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.74 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.68 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.68 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.67 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.66 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.62 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.6 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.58 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.57 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.51 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.51 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.51 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.48 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.47 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.44 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.37 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.34 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.26 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.18 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.16 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.09 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.05 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.94 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.91 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 95.89 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.83 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.82 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.67 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.46 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.37 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.3 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.28 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.28 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.25 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 95.18 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.16 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.14 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.08 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.04 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.97 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.85 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.85 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.84 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.81 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.81 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.74 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.74 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.63 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.47 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.35 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.25 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.08 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.97 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.86 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.83 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.82 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.7 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.59 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.53 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.45 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.37 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.29 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.25 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.23 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.2 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.93 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.9 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.58 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 92.35 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.12 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.01 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.94 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.87 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.7 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.64 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.52 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.43 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.33 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.84 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.65 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.44 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.07 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.21 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.14 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.92 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.65 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.56 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.33 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.18 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.1 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.06 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.05 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.72 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.43 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.3 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.16 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 87.1 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.51 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.39 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 85.93 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.84 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 85.77 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 85.73 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.66 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.4 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.3 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 84.08 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.59 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.22 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.19 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 83.07 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 82.76 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.68 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.24 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 81.82 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 81.7 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 81.28 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 80.84 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.45 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.06 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-128 Score=1102.35 Aligned_cols=682 Identities=36% Similarity=0.660 Sum_probs=669.0
Q ss_pred cchhhHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcH---HHHHHHHHHhccCCCCCHh
Q 005512 2 ARVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLF 78 (693)
Q Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~ 78 (693)
.||+++||.++++|++.|++++|+++|+.|... +..||.+||++++++|+..+++ +++|..+.+.|+ .+|+.
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~---g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~ 223 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA---GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF--ELDVD 223 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC--Ccccc
Confidence 489999999999999999999999999999754 4689999999999999998887 899999999999 99999
Q ss_pred HHHHHHHHHHccCChHHHHHHhcccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccC
Q 005512 79 LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158 (693)
Q Consensus 79 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 158 (693)
++|+|+.+|+++|++++|.++|++|+.+ |.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~-d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRR-DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCC-CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 9999999999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 005512 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238 (693)
Q Consensus 159 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 238 (693)
+++.|.++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHH---HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHH
Q 005512 239 EGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315 (693)
Q Consensus 239 ~g~~p~~~t~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 315 (693)
.|+.||..|+ +.+|+..|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.++|+++||+||
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi 462 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 9999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHH
Q 005512 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395 (693)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 395 (693)
.+|+++|+.++|+++|++|.. ++.||..||+++|.+|++.|.++.++++|..+.+.|+.+|..++|+|+++|+|+|+++
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHH
Confidence 999999999999999999986 6999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhC
Q 005512 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474 (693)
Q Consensus 396 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 474 (693)
+|.++|+++ .+|+++||+||.+|+++|+.++|+++|++|.+. +.||..||+.++.+|++.|++++|.++|+.|.+++|
T Consensus 542 ~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 542 YAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred HHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC
Confidence 999999999 999999999999999999999999999999988 999999999999999999999999999999997789
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 005512 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554 (693)
Q Consensus 475 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 554 (693)
+.|+..+|++|+++|+++|++++|.+++++|+++||..+|++|+++|..+|+.+.|+.+.+++++++|+++..|..|+++
T Consensus 621 i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ 700 (857)
T PLN03077 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNL 700 (857)
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCcce----
Q 005512 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFP---- 630 (693)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~---- 630 (693)
|++.|+|++|.++++.|+++|++|+||+|||++++.+|.|.+||.+||+.++||..+.++..+|++.||+||+..+
T Consensus 701 ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~ 780 (857)
T PLN03077 701 YADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEI 780 (857)
T ss_pred HHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred ----------------eeeeccccCCCCeEEEEecccccCCCCCcccccccccCceEEEecCCcccccccccccCCC
Q 005512 631 ----------------FVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691 (693)
Q Consensus 631 ----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~~sc~~ 691 (693)
+||||+++|+|.||||+||||+|+|||+++||||++++|+|||||.+|||||++|+|||+|
T Consensus 781 ~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 781 EVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999997
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-115 Score=975.05 Aligned_cols=595 Identities=38% Similarity=0.667 Sum_probs=581.3
Q ss_pred HhcccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 005512 99 LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177 (693)
Q Consensus 99 ~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 177 (693)
.++..+.+++..+|+++|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..|.+.|+.|
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~ 156 (697)
T PLN03081 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156 (697)
T ss_pred hcccccCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc
Confidence 34444444478899999999999999999999999998764 78999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH---HHHHHh
Q 005512 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMAC 254 (693)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---l~~~~~ 254 (693)
|..+||.|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..|| +.+|+.
T Consensus 157 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 899999
Q ss_pred cCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHh
Q 005512 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334 (693)
Q Consensus 255 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 334 (693)
.+..+.+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHH
Q 005512 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414 (693)
Q Consensus 335 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~ 414 (693)
.+.|+.||..||++++.+|++.|.++.|.++|..+.+.|+++|..++|+|+++|+|+|++++|.++|++|.+||+++||+
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc-cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC
Q 005512 415 MISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493 (693)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 493 (693)
||.+|+++|+.++|+++|++|.+. +.||..||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 999999999999999999999988 9999999999999999999999999999999987899999999999999999999
Q ss_pred CHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 494 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
++++|.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++|++.|+|++|.++++.|++
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCcce---------------------ee
Q 005512 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFP---------------------FV 632 (693)
Q Consensus 574 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~---------------------~~ 632 (693)
+|+++.||+||+++++.+|.|++||..||+..+||+++.++..+|++.||.||+..+ +|
T Consensus 557 ~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a 636 (697)
T PLN03081 557 KGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIA 636 (697)
T ss_pred cCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998754 89
Q ss_pred eeccccCCCCeEEEEecccccCCCCCcccccccccCceEEEecCCcccccccccccCCCCC
Q 005512 633 FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693 (693)
Q Consensus 633 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~~sc~~~~ 693 (693)
|||+++|+|.||||+||||+|+|||+++|+||++++|+|||||.+|||||++|+|||+|||
T Consensus 637 ~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 637 FGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred hhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-87 Score=766.58 Aligned_cols=663 Identities=26% Similarity=0.410 Sum_probs=600.9
Q ss_pred cchhhHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcH---HHHHHHHHHhccCCCCCHh
Q 005512 2 ARVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLF 78 (693)
Q Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~ 78 (693)
.|++.++|.++.++++.|++++|+.+|+.|...+ ..|+..+|..++++|.+.+.+ .++|..+.+.|. .+++.
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 122 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELR---VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP--SLGVR 122 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC--CCCch
Confidence 4788899999999999999999999999997644 578999999999999988877 899999999998 89999
Q ss_pred HHHHHHHHHHccCChHHHHHHhcccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccC
Q 005512 79 LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158 (693)
Q Consensus 79 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 158 (693)
++|+|+++|+++|+++.|.++|++|+++ |+++||++|++|++.|++++|+++|++|...|+.||..||+.++++|+..+
T Consensus 123 ~~n~li~~~~~~g~~~~A~~~f~~m~~~-d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMPER-DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCCC-CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 9999999999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 005512 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238 (693)
Q Consensus 159 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 238 (693)
++..+.++|..+++.|+.||..++|+||.+|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHH---HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHH
Q 005512 239 EGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315 (693)
Q Consensus 239 ~g~~p~~~t~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 315 (693)
.|+.||..|| +.+|+..|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li 361 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHH
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHH
Q 005512 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395 (693)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 395 (693)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC
Q 005512 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475 (693)
Q Consensus 396 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 475 (693)
+|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|...++||..||+.++.+|++.|.++.+.+++..+.+ .|+
T Consensus 442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~ 520 (857)
T PLN03077 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGI 520 (857)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCC
Confidence 9999999999999999999999999999999999999999877999999999999999999999999999999998 499
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCchhHHHHHHH
Q 005512 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD-AENPGRYVILSNI 554 (693)
Q Consensus 476 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~ 554 (693)
.++..++++||++|+++|++++|.++|+++ .||.++|++++.+|.++|+.++|+++|++|.+.+ .+|..+|+.++.+
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 999999999999999999999999999999 7999999999999999999999999999999865 3467899999999
Q ss_pred HHhcCChHHHHHHHHHHH-hCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCcce---
Q 005512 555 YASSGKRIEANRIRALMK-RRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFP--- 630 (693)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~--- 630 (693)
|++.|++++|.++|+.|. +.|+.|+...... .+......++.++ +.+++++| ++.||...|
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~--------lv~~l~r~G~~~e----A~~~~~~m---~~~pd~~~~~aL 663 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC--------VVDLLGRAGKLTE----AYNFINKM---PITPDPAVWGAL 663 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHH--------HHHHHHhCCCHHH----HHHHHHHC---CCCCCHHHHHHH
Confidence 999999999999999999 6788765321100 0111122233333 45555555 689998876
Q ss_pred ------------------eeeeccccCCCCeEEEEecccccCCCCCcccccccccCc--------eEEEecCCccccccc
Q 005512 631 ------------------FVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGR--------EIIVRDAHRFHHFKD 684 (693)
Q Consensus 631 ------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~--------~~~~~d~~~~h~~~~ 684 (693)
..+.+.|..++..+.+.+-+...|++.++.++...|..+ ..|- -.+..|-|..
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie-~~~~~~~f~~ 742 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE-VKGKVHAFLT 742 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE-ECCEEEEEec
Confidence 112233333344444445566788999998877766544 2222 2367888877
Q ss_pred ccccC
Q 005512 685 GTCSC 689 (693)
Q Consensus 685 g~~sc 689 (693)
|--|-
T Consensus 743 ~d~~h 747 (857)
T PLN03077 743 DDESH 747 (857)
T ss_pred CCCCC
Confidence 75543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-69 Score=604.77 Aligned_cols=469 Identities=23% Similarity=0.406 Sum_probs=449.8
Q ss_pred chhhHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcH---HHHHHHHHHhccCCCCCHhH
Q 005512 3 RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFL 79 (693)
Q Consensus 3 p~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~ 79 (693)
++..+|+.++.++.+.|++++|+++|+.|.... +..|+..+|++++.+|.+.+.+ .++|..+.+.|+ .+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~--~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~--~~~~~~ 160 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGC--PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF--EPDQYM 160 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CcchHH
Confidence 456799999999999999999999999997532 3458999999999999998887 899999999999 999999
Q ss_pred HHHHHHHHHccCChHHHHHHhcccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC
Q 005512 80 VTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159 (693)
Q Consensus 80 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 159 (693)
+|.|+++|+++|+++.|.++|++|+.+ |.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCC-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 999999999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 005512 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239 (693)
Q Consensus 160 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 239 (693)
.+.+.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|+++|++++|+++|++|.+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHH---HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHH
Q 005512 240 GIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316 (693)
Q Consensus 240 g~~p~~~t~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 316 (693)
|+.||..|| +.+|++.|+++.|.++|..+.+.|+.+|..++|+|+++|+|+|++++|.++|++|.++|+++||+||.
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHhhCCHH
Q 005512 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH-CFLGNQLALDTAVVDLYVKCGSLM 395 (693)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~y~k~g~~~ 395 (693)
+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++++.|.+ .|+.|+..+|++++++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999986 699999999999999999999999
Q ss_pred HHHHHHHhcC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhh
Q 005512 396 HARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKP-DHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473 (693)
Q Consensus 396 ~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 473 (693)
+|.++|++|. .||..+|++|+.+|..+|+.+.|..+++++.+ ..| +..+|..+++.|++.|++++|.++++.|.+.
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~-~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~- 557 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG-MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK- 557 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC-CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-
Confidence 9999999997 78999999999999999999999999999876 445 5679999999999999999999999999874
Q ss_pred CCCCC
Q 005512 474 GVAPR 478 (693)
Q Consensus 474 ~~~~~ 478 (693)
|+.+.
T Consensus 558 g~~k~ 562 (697)
T PLN03081 558 GLSMH 562 (697)
T ss_pred CCccC
Confidence 87643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=581.25 Aligned_cols=506 Identities=19% Similarity=0.237 Sum_probs=467.1
Q ss_pred HhccCCCCCHhHHHHHHHHHHccCChHHHHHHhcccCCC----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005512 68 RSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS----CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143 (693)
Q Consensus 68 ~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 143 (693)
..|..+.++...+..++..++++|++++|.++|++|+.+ ++...++.++.+|.+.|..++|+.+|+.|.. ||
T Consensus 361 ~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd 436 (1060)
T PLN03218 361 NGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PT 436 (1060)
T ss_pred ccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CC
Confidence 344444677888999999999999999999999999876 2344566778889999999999999999974 99
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCC----CCCcchHHHHHHH
Q 005512 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP----ERNVVTWSSLTGA 219 (693)
Q Consensus 144 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~ 219 (693)
..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+||+||.+|+++|++++|.++|++|. .||..+|++||.+
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 4899999999999
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCCHHHH---HHHHHhcCCchHHHHHHHHHHH--hCCCCchhHHHHHHHHHHHcCCch
Q 005512 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVD--NGLDLDQSLQNAAMVMYARCGRMD 294 (693)
Q Consensus 220 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---l~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~ 294 (693)
|++.|++++|+++|++|.+.|+.||..+| +.+|++.|++++|.+++..|.+ .|+.||..+|++|+++|+++|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999998 9999999999999999999987 678999999999999999999999
Q ss_pred hHHHHHhcccC----CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHH
Q 005512 295 MARRFFEGILN----KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370 (693)
Q Consensus 295 ~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 370 (693)
+|.++|++|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999965 56799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCChhH
Q 005512 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK----QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHIT 445 (693)
Q Consensus 371 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t 445 (693)
+.|+.|+..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|+++|++|... +.||..|
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999995 699999999999999999999999999999988 9999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh----hcC-------------------CHHHHHHHH
Q 005512 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG----RAG-------------------KLNEAREFI 502 (693)
Q Consensus 446 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g-------------------~~~~A~~~~ 502 (693)
|+.++.+|++.|++++|.++|+.|.+. |+.||..+|++|++++. +++ ..++|..+|
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 999999999999999999999999985 99999999999998743 222 346799999
Q ss_pred HhC---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 005512 503 ERM---PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD-LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578 (693)
Q Consensus 503 ~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 578 (693)
++| ++.||..+|+++++++...+..+.+..+++.+.. -.+++..+|+.|++.+.+. .++|..++++|.+.|+.|
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCC
Confidence 999 7899999999999888888889998888887653 3456778999999988432 368999999999999987
Q ss_pred CC
Q 005512 579 IT 580 (693)
Q Consensus 579 ~~ 580 (693)
..
T Consensus 914 ~~ 915 (1060)
T PLN03218 914 SV 915 (1060)
T ss_pred Cc
Confidence 54
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=565.70 Aligned_cols=479 Identities=15% Similarity=0.223 Sum_probs=263.0
Q ss_pred chhhHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcH---HHHHHHHHHhccCCCCCHhH
Q 005512 3 RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFL 79 (693)
Q Consensus 3 p~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~ 79 (693)
|+..+++.++.+|.+.|.+++|+++|+.|.. |+..+|+.++.+|++.+++ .+++..|.+.|+ .+|+.+
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-------pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl--~pD~~t 474 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-------PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL--KADCKL 474 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC--CCCHHH
Confidence 3334444444444444444444444444331 4555555555555555554 455555555555 555555
Q ss_pred HHHHHHHHHccCChHHHHHHhcccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 005512 80 VTNLVSQYASLGSISHAFSLFSSVSD---SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156 (693)
Q Consensus 80 ~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 156 (693)
||.||.+|+++|+++.|.++|++|.. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k 554 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 55566666555555555555555542 135555555665555555555555555555555555555556555555555
Q ss_pred cCChHHHHHHHHHHHH--hCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC----CCcchHHHHHHHHHhcCCchHHH
Q 005512 157 LRDIEFGVKVHKDAVD--SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE----RNVVTWSSLTGAYAQNGCYEEGL 230 (693)
Q Consensus 157 ~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~ 230 (693)
.|++++|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.++|++|.+ |+..+||++|.+|++.|++++|+
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl 634 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH
Confidence 5555555555555554 34555555555555555555555555555555543 34455555555555555555566
Q ss_pred HHHHHHHHCCCCCCHHHH---HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhccc---
Q 005512 231 LLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL--- 304 (693)
Q Consensus 231 ~~~~~m~~~g~~p~~~t~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--- 304 (693)
++|++|.+.|+.||..+| +.+|++.|++++|.+++..|.+.|+.||..+|++||++|+++|++++|.++|++|.
T Consensus 635 ~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 666555555555555555 55555555555555555555555555555555556666666565555555555552
Q ss_pred -CCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHH
Q 005512 305 -NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383 (693)
Q Consensus 305 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 383 (693)
.||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..|.+.|+.||..+|++
T Consensus 715 ~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns 794 (1060)
T PLN03218 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3555555666666555555555666655555555555555555555555555555555555555555555555555555
Q ss_pred HHHHH----HhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCChhHHHHHHHHHHhcCC
Q 005512 384 VVDLY----VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458 (693)
Q Consensus 384 li~~y----~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~g~ 458 (693)
|++++ .+++...++...|+.+...+...|+ ++|+.+|++|++. +.||..||+.++.+++..+.
T Consensus 795 LIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~ 862 (1060)
T PLN03218 795 ITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHD 862 (1060)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHhccccc
Confidence 55442 2222222222223222222222222 3456666666555 66666666666655545555
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005512 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (693)
.+.+..+++.|... +..|+..+|++||+++++. .++|..+|++|
T Consensus 863 ~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 863 ATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 55555555554432 4555555566666655321 24566666555
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=314.02 Aligned_cols=552 Identities=11% Similarity=0.054 Sum_probs=335.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcH---HHHHHHHHHhccCCCCCHhHHHHHH
Q 005512 8 QMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLV 84 (693)
Q Consensus 8 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~li 84 (693)
+..+...+.+.|++++|...|+.+....+ .+...+..+.......+.. ......+.+.. +.++..++.+.
T Consensus 298 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~ 370 (899)
T TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYAP----NSHQARRLLASIQLRLGRVDEAIATLSPALGLD---PDDPAALSLLG 370 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHH
Confidence 34445566777888888888877654321 1223333333333344444 23333333332 45666777777
Q ss_pred HHHHccCChHHHHHHhcccCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHH
Q 005512 85 SQYASLGSISHAFSLFSSVSD--SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF 162 (693)
Q Consensus 85 ~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 162 (693)
..|.+.|++++|.+.|+++.. +.+...|..+...+...|++++|++.|+.+.+... .+......++..+.+.|++++
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~ 449 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDK 449 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHH
Confidence 777777888888777776532 11455666677777777777777777777765432 122334445556666777777
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 005512 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239 (693)
Q Consensus 163 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 239 (693)
|..++..+.+.. +.+..+++.+...|...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++.+.
T Consensus 450 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 528 (899)
T TIGR02917 450 ALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528 (899)
T ss_pred HHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 777777666543 34556666777777777777777777766543 23445666666666777777777777776654
Q ss_pred CCCCCHHHH---HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHH
Q 005512 240 GIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTS 313 (693)
Q Consensus 240 g~~p~~~t~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~ 313 (693)
+.. +...+ ...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++++.. .+...|..
T Consensus 529 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 606 (899)
T TIGR02917 529 DPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM 606 (899)
T ss_pred CcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 322 11111 445555666777777766666554 33445556666667777777777776666632 34556666
Q ss_pred HHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCC
Q 005512 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393 (693)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~ 393 (693)
+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..++..+.+.|+
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 6666777777777777776666542 2234455556666666667777776666666543 3345566666666666666
Q ss_pred HHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 005512 394 LMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470 (693)
Q Consensus 394 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 470 (693)
+++|..+++.+.. .+...|..+...+...|++++|++.|+++.. ..|+..++..+..++.+.|++++|.+.++.+.
T Consensus 685 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 763 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK-RAPSSQNAIKLHRALLASGNTAEAVKTLEAWL 763 (899)
T ss_pred HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666666652 3445566666666666666666666666655 34444555566666666666666666666665
Q ss_pred HhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 005512 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIR-PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548 (693)
Q Consensus 471 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 548 (693)
+ ..+.+...+..+...|.+.|++++|.+.|+++ ... ++..+++.+...+...|+ .+|+..++++++..|+++..+
T Consensus 764 ~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~ 840 (899)
T TIGR02917 764 K--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAIL 840 (899)
T ss_pred H--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHH
Confidence 4 33445566666666666666666666666665 222 345556666666666666 556666666666666666666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 549 VILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 549 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
..++.+|...|++++|.++++++.+.+.
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6666666666666666666666665443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=305.15 Aligned_cols=551 Identities=12% Similarity=0.025 Sum_probs=430.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcH---HHHHHHHHHhccCCCCCHhHHHHHHH
Q 005512 9 MVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVS 85 (693)
Q Consensus 9 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~li~ 85 (693)
......+.+.|++++|++.|+.+....+.. ++ .+..+-..+...+.. ...+....+.. +.++.....+..
T Consensus 265 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~la~ 337 (899)
T TIGR02917 265 YLKALVDFQKKNYEDARETLQDALKSAPEY--LP--ALLLAGASEYQLGNLEQAYQYLNQILKYA---PNSHQARRLLAS 337 (899)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--hh--HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHH
Confidence 334445577899999999998876543211 11 111111222334444 44455554443 556777888888
Q ss_pred HHHccCChHHHHHHhcccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHH
Q 005512 86 QYASLGSISHAFSLFSSVSDS--CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163 (693)
Q Consensus 86 ~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 163 (693)
.+.+.|++++|...++.+... .+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|+.++|
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 416 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEA 416 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHH
Confidence 999999999999999876432 256678888899999999999999999988753 23455667777778888999999
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 005512 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240 (693)
Q Consensus 164 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 240 (693)
.+.+..+.+... ........++..|.+.|++++|..+++.+.. .+..+|+.+...|...|++++|.+.|+++.+..
T Consensus 417 ~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 417 IADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 999998887653 2345566788889999999999999988764 356788888999999999999999999988754
Q ss_pred CCCCHHHH--HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHHHH
Q 005512 241 IRPNRVVI--LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMI 315 (693)
Q Consensus 241 ~~p~~~t~--l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li 315 (693)
.......+ ...+...|++++|.+.+..+.+.. +.+..++..+...|.+.|+.++|...|+++.. .+...+..++
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 574 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALA 574 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 32222222 666778899999999999988775 44677888889999999999999999988743 3456778888
Q ss_pred HHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHH
Q 005512 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395 (693)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 395 (693)
..|.+.|++++|+.+++++.... +.+..++..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|+++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 89999999999999999987653 4466778888888899999999999999888764 445677888889999999999
Q ss_pred HHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 005512 396 HARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472 (693)
Q Consensus 396 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 472 (693)
+|..+|+++.+ .+..+|..++..+...|++++|..+++.+....+++...+..+...+...|++++|.+.++.+.+
T Consensus 653 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~- 731 (899)
T TIGR02917 653 KAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK- 731 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 99999988763 45778889999999999999999999998876666777888888889999999999999998875
Q ss_pred hCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHH
Q 005512 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIR-PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550 (693)
Q Consensus 473 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 550 (693)
..|+..++..++..+.+.|++++|.+.++++ ... .+..++..+...|...|+.++|+..++++++..|+++.++..
T Consensus 732 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 732 --RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred --hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3455577788889999999999999988887 223 367777888888888999999999999999999999989999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 551 LSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 551 l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
++.+|.+.|+ .+|..+++++.+..
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 9999999999 88999999887653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-22 Score=233.42 Aligned_cols=547 Identities=12% Similarity=0.033 Sum_probs=395.2
Q ss_pred HHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHh-cCcCcH---HHHHHHHHHhccCCCCCHhHHHHHHHH
Q 005512 11 MQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQC-QTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQ 86 (693)
Q Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~li~~ 86 (693)
..+.+.+.|++++|++.|+++.... .++........... ...+.. ......+.+.. |.++.....+...
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~----p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~---P~~~~~~~~LA~l 190 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA----PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY---PGNTGLRNTLALL 190 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC----CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 3446788999999999999987543 22222111111221 122333 33444444442 6678888999999
Q ss_pred HHccCChHHHHHHhcccCCCCCc-----ccH-----------------HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc
Q 005512 87 YASLGSISHAFSLFSSVSDSCDL-----FLW-----------------NVMIRAFVDNRQFDRSLQLYAQMRELDINPDK 144 (693)
Q Consensus 87 y~~~g~~~~A~~~f~~~~~~~~~-----~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 144 (693)
+.+.|+.++|...|+++...+.. ..| ...+..+-.....+.|...+.++......|+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 99999999999999987443211 111 11111122222344555556555433222221
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC--CCc---chHHHH---
Q 005512 145 FTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNV---VTWSSL--- 216 (693)
Q Consensus 145 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~---~~~~~l--- 216 (693)
.. ...-..+...|++++|...++..++.. +.+...+..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 271 ~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 271 RA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred HH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 11 122345677899999999999999875 34778889999999999999999999998765 322 223222
Q ss_pred ---------HHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH--HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005512 217 ---------TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI--LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285 (693)
Q Consensus 217 ---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 285 (693)
...+.+.|++++|+..|++.++.........+ ...+...|++++|.+.++.+++.. +.+...+..+..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~ 427 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLAN 427 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567899999999999999987433222222 667788999999999999999875 334556677777
Q ss_pred HHHHcCCchhHHHHHhcccCCC------------hhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccC-cchhhhHHHH
Q 005512 286 MYARCGRMDMARRFFEGILNKD------------LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD-SVTFLGVIRA 352 (693)
Q Consensus 286 ~y~~~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 352 (693)
.|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQD 504 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 775 467899999998875432 123556677888999999999999999876 454 4456677788
Q ss_pred hhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCC----CHh---------HHHHHHHHH
Q 005512 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK----NVI---------SWSTMISGY 419 (693)
Q Consensus 353 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~----~~~---------~~~~li~~~ 419 (693)
+.+.|++++|...++.+++.. +.+......+...+.+.|+.++|...++.+... +.. .+..+...+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999998754 334455555566678899999999999988632 111 123456678
Q ss_pred HhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHH
Q 005512 420 GMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499 (693)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 499 (693)
...|+.++|+.+++. .+++...+..+...+.+.|++++|...++.+.+ .-+.+...+..++..|...|++++|+
T Consensus 584 ~~~G~~~eA~~~l~~----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 899999999999872 455666778888999999999999999999986 34456788999999999999999999
Q ss_pred HHHHhCC-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc------hhHHHHHHHHHhcCChHHHHHHHHHH
Q 005512 500 EFIERMP-IRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP------GRYVILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 500 ~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m 571 (693)
+.++... ..| +...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|...+++.
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999873 445 455667777888899999999999999998876544 35666789999999999999999987
Q ss_pred Hh-CCCc
Q 005512 572 KR-RGVK 577 (693)
Q Consensus 572 ~~-~~~~ 577 (693)
.. .|+.
T Consensus 738 l~~~~~~ 744 (1157)
T PRK11447 738 MVASGIT 744 (1157)
T ss_pred HhhcCCC
Confidence 54 3443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-22 Score=233.40 Aligned_cols=557 Identities=10% Similarity=0.028 Sum_probs=395.0
Q ss_pred hhhHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhH--------------HHHHHHhcCcCcH---HHHHHHH
Q 005512 4 VVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETC--------------ISSIKQCQTLQSL---KTLHAFT 66 (693)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~--------------~~ll~~~~~~~~~---~~~~~~~ 66 (693)
|+..+..++..+.+.|+.++|.+.+++.....+... ..... ...-+.....+.. .+.+..+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~--~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSN--AYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCh--HHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 456677788888999999999999999876542221 11110 1111122233333 4444444
Q ss_pred HHhccCCCCCHhHHH-HHHHHHHccCChHHHHHHhcccCCC-C-CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--
Q 005512 67 LRSRFYHHHDLFLVT-NLVSQYASLGSISHAFSLFSSVSDS-C-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN-- 141 (693)
Q Consensus 67 ~~~g~~~~~~~~~~~-~li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-- 141 (693)
.+.. +++..... -+.......|+.++|.+.|+++... | +...+..+...+...|++++|++.|+++......
T Consensus 139 l~~~---p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 139 FNGA---PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred ccCC---CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 4332 33332211 1122223458899999999887442 2 5567788888888899999999999988653210
Q ss_pred --------------CCcc---cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhcc
Q 005512 142 --------------PDKF---TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE 204 (693)
Q Consensus 142 --------------p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 204 (693)
++.. .+...+..+-.......+...+....+....|+.. ...+...+...|++++|...|++
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 0000 01111111222222344555554444332233322 23445677889999999999998
Q ss_pred CCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH----------HH------HHHHHhcCCchHHHHHH
Q 005512 205 MPE--R-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV----------VI------LNAMACVRKVSEADDVC 265 (693)
Q Consensus 205 m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~------l~~~~~~~~~~~a~~~~ 265 (693)
..+ | |...+..+...|.+.|++++|+..|++..+........ .+ ...+...|++++|...+
T Consensus 295 aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 295 AVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 765 3 67789999999999999999999999998765432211 01 33566889999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCccc-
Q 005512 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP- 341 (693)
Q Consensus 266 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 341 (693)
..+++.. +.+...+..|...|.+.|++++|.+.|++..+ .+...+..+...|. .++.++|+..++.+.......
T Consensus 375 ~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 375 QQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 9999875 34566778899999999999999999999864 34556777777774 467899999887764331100
Q ss_pred -------CcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--C-CHhH
Q 005512 342 -------DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--K-NVIS 411 (693)
Q Consensus 342 -------~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~ 411 (693)
....+......+...|++++|...++.+++.. +.+..++..+...|.+.|++++|...|+++.+ | +...
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~ 531 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQ 531 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 11233445566778899999999999999865 34567788899999999999999999998753 3 5556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCh---------hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhH
Q 005512 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDH---------ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~---------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 481 (693)
+..+...+...|+.++|+..++++... ..++. ..+..+...+...|+.++|.++++. .+.+...
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~ 605 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRI 605 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchH
Confidence 666666677899999999999886543 22222 1233456778899999999998872 2445667
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 005512 482 YACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559 (693)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 559 (693)
+..+.+.|.+.|++++|++.|++. ...| +...+..+...+...|+.++|+..++++.+..|+++..+..++.++...|
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 788999999999999999999988 4455 57888999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 005512 560 KRIEANRIRALMKRRG 575 (693)
Q Consensus 560 ~~~~a~~~~~~m~~~~ 575 (693)
++++|.++++++.+..
T Consensus 686 ~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CHHHHHHHHHHHhhhC
Confidence 9999999999998754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-19 Score=197.53 Aligned_cols=541 Identities=10% Similarity=0.027 Sum_probs=281.7
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcHHHHHHHHHHhccCCCCCHhHHHHHHH
Q 005512 6 VTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85 (693)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~li~ 85 (693)
..+..+.++|.+.|+.++|+..+++.....+ -|.. +...+....+......+...+.+.. |.+..++..+..
T Consensus 79 ~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP----~n~~-~~~~La~i~~~~kA~~~ye~l~~~~---P~n~~~~~~la~ 150 (987)
T PRK09782 79 PLTLYLAEAYRHFGHDDRARLLLEDQLKRHP----GDAR-LERSLAAIPVEVKSVTTVEELLAQQ---KACDAVPTLRCR 150 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc----ccHH-HHHHHHHhccChhHHHHHHHHHHhC---CCChhHHHHHHH
Confidence 3445555566666666666666665554331 1222 2222222222221133344444332 344444444444
Q ss_pred H--------HHccCChHHHHHHhcccCCCCCccc-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 005512 86 Q--------YASLGSISHAFSLFSSVSDSCDLFL-WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156 (693)
Q Consensus 86 ~--------y~~~g~~~~A~~~f~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 156 (693)
. |.+.+....|++ .......|+... .-.+.+.|.+.|++++|++++.++.+.+. .+..-...+-.++..
T Consensus 151 ~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q 228 (987)
T PRK09782 151 SEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLA 228 (987)
T ss_pred HhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 4 555555555554 222222222222 22335666666666666666666665542 122223333344444
Q ss_pred -cCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC-----CCcchHHH---------------
Q 005512 157 -LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE-----RNVVTWSS--------------- 215 (693)
Q Consensus 157 -~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~--------------- 215 (693)
.++ +.+..++.. .+..+..+..++.+.|.+.|+.++|.+++++++. |+..+|--
T Consensus 229 ~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~ 303 (987)
T PRK09782 229 GQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALAN 303 (987)
T ss_pred hhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccc
Confidence 244 444444332 2224555566666666666666666666665542 11111111
Q ss_pred ---------------HHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH---HHHHHhcCCchHHHHHHHHHHHhCCCCch
Q 005512 216 ---------------LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQ 277 (693)
Q Consensus 216 ---------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 277 (693)
++.-+.++++++.+.++.. ..|..... ..+....+...++.+.+..+.+.. +-+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~ 376 (987)
T PRK09782 304 YTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANL 376 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCH
Confidence 1222333333332222211 11111111 111112233333333333333321 1123
Q ss_pred hHHHHHHHHHHHcCCchhHHHHHhcccC--CC----hhhHHHHHHHHHHcCC---chHHHHH------------HHH---
Q 005512 278 SLQNAAMVMYARCGRMDMARRFFEGILN--KD----LVSWTSMIEAYAQADL---PLEALEV------------YRQ--- 333 (693)
Q Consensus 278 ~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~---~~~A~~~------------~~~--- 333 (693)
...--+.-...+.|+.++|.++|++... ++ ...-+-++..|.+.+. ..+++.+ ..+
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG 456 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh
Confidence 3333333445566777777777776643 11 2233355566666554 3333222 111
Q ss_pred -------hHH-CCcccC---cchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHH
Q 005512 334 -------MIL-RRVLPD---SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402 (693)
Q Consensus 334 -------m~~-~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 402 (693)
... .+..|+ ...+..+-.++.. +..++|...+....... |+......+...+...|++++|...|+
T Consensus 457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 110 011122 2333333333333 66777777666665543 343333334444557788888888887
Q ss_pred hcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChh
Q 005512 403 RMKQ--KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480 (693)
Q Consensus 403 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 480 (693)
++.. ++...+..+...+.+.|+.++|...|++..+..+++...+..+.......|++++|...++...+ ..|+..
T Consensus 534 ka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~ 610 (987)
T PRK09782 534 KISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSAN 610 (987)
T ss_pred HHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHH
Confidence 6652 44455666667777788888888888777663222333333334444556888888888877764 345677
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc
Q 005512 481 HYACMVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558 (693)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 558 (693)
.+..+..++.+.|++++|.+.+++. ...|+ ...+..+..++...|+.++|+..++++++.+|+++..+..++.+|...
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 7777788888888888888888776 44554 455566666777788888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHhC
Q 005512 559 GKRIEANRIRALMKRR 574 (693)
Q Consensus 559 g~~~~a~~~~~~m~~~ 574 (693)
|++++|...+++..+.
T Consensus 691 Gd~~eA~~~l~~Al~l 706 (987)
T PRK09782 691 DDMAATQHYARLVIDD 706 (987)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 8888888888877654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-19 Score=199.22 Aligned_cols=549 Identities=13% Similarity=0.019 Sum_probs=381.4
Q ss_pred chhhHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHH------HHhcCcCcH-HHHHHHHHHhccCCCC
Q 005512 3 RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSI------KQCQTLQSL-KTLHAFTLRSRFYHHH 75 (693)
Q Consensus 3 p~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll------~~~~~~~~~-~~~~~~~~~~g~~~~~ 75 (693)
|+=..|..++..+ +++++|.+.|+++....+. ..+.....+.+ -.+.+.... +.+. ...... .+
T Consensus 109 P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~--n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~--~~ 179 (987)
T PRK09782 109 PGDARLERSLAAI---PVEVKSVTTVEELLAQQKA--CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAA--SP 179 (987)
T ss_pred cccHHHHHHHHHh---ccChhHHHHHHHHHHhCCC--ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCC--CC
Confidence 4434444444333 8999999999999765522 22222222222 013333322 3443 222211 33
Q ss_pred CHhHHHHH-HHHHHccCChHHHHHHhcccCCC-C-CcccHHHHHHHHHhC-CChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 005512 76 DLFLVTNL-VSQYASLGSISHAFSLFSSVSDS-C-DLFLWNVMIRAFVDN-RQFDRSLQLYAQMRELDINPDKFTFPFVL 151 (693)
Q Consensus 76 ~~~~~~~l-i~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 151 (693)
++.+.... .+.|.+.|++++|.+++.++.+. | +..-+..|-.+|.++ ++ +++..+++. .++-|......+.
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala 254 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYA 254 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHH
Confidence 45444444 89999999999999999988543 2 444466777788884 66 778887553 2335777888999
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCC-CCh------------------------------hhHHHHHHHHHhCCCHHHHHH
Q 005512 152 KACGYLRDIEFGVKVHKDAVDSGYW-SDV------------------------------FVGNSLIAMYGKCGRVDVCRQ 200 (693)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~g~~-~~~------------------------------~~~~~li~~~~~~g~~~~A~~ 200 (693)
..+.+.|+.++|.+++..+...-.. |+. ...-.++..+.+.++++.+.+
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999999886543111 111 112233677778888887777
Q ss_pred HhccCCCCCcchHHHHHH--HHHhcCCchHHHHHHHHHHHCCCCCCHHHH--HHHHHhcCCchHHHHHHHHHHHh-C-CC
Q 005512 201 LFDEMPERNVVTWSSLTG--AYAQNGCYEEGLLLFKRMMDEGIRPNRVVI--LNAMACVRKVSEADDVCRVVVDN-G-LD 274 (693)
Q Consensus 201 ~f~~m~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--l~~~~~~~~~~~a~~~~~~~~~~-g-~~ 274 (693)
+.+ ....+. . ..+. +....+...++....+.|.+....-...-. .-.....|+.++|.+++...... + -.
T Consensus 335 ~~~-~~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 335 LLA-TLPANE-M--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred Hhc-CCCcch-H--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 744 222222 1 2222 222346677777777777765221111111 33445678899999999988773 1 12
Q ss_pred CchhHHHHHHHHHHHcCCchhHHH---H-------------------------HhcccC---C--ChhhHHHHHHHHHHc
Q 005512 275 LDQSLQNAAMVMYARCGRMDMARR---F-------------------------FEGILN---K--DLVSWTSMIEAYAQA 321 (693)
Q Consensus 275 ~~~~~~~~li~~y~~~g~~~~A~~---~-------------------------f~~~~~---~--~~~~~~~li~~~~~~ 321 (693)
.+....+-|+..|.+.+.++...+ + +..... + +...|..+..++..
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-
Confidence 345566688889988877333222 2 111111 2 45677878877776
Q ss_pred CCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHH
Q 005512 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401 (693)
Q Consensus 322 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 401 (693)
+++++|+..|.+.... .|+......+..++...|++++|...+..+... +|+......+...+.+.|+.++|...|
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8999999988887765 466554434444556899999999999987654 344445567778889999999999999
Q ss_pred HhcCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC
Q 005512 402 DRMKQKNVISWSTM---ISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478 (693)
Q Consensus 402 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 478 (693)
+...+.++..++.. .......|++++|+..|++..+ ..|+...+..+..++.+.|+.++|...++...+ --+.+
T Consensus 566 ~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~-l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~ 642 (987)
T PRK09782 566 QQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN-IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNN 642 (987)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC
Confidence 98875433333332 3334455999999999999987 667888899999999999999999999999986 34446
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 479 PEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
...+..+...+...|++++|++.+++. ...| +...+..+..++...|++++|+..++++++++|++..+....+++..
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 778888999999999999999999987 4456 57788999999999999999999999999999999999989999999
Q ss_pred hcCChHHHHHHHHHHHhCCCc
Q 005512 557 SSGKRIEANRIRALMKRRGVK 577 (693)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~~~ 577 (693)
+..+++.|.+-+++....++.
T Consensus 723 ~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 723 QRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHHHHHHHHhhcCcc
Confidence 999999999888877665543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-20 Score=181.69 Aligned_cols=442 Identities=13% Similarity=0.130 Sum_probs=348.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 005512 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191 (693)
Q Consensus 112 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 191 (693)
...|..-..+.|++++|.+.-...-+.+ +.+......+-..+....+++...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4556666677888888887644333322 2222222222233444445555444433344433 2345678888999999
Q ss_pred CCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH----HHHHHhcCCchHHHHH
Q 005512 192 CGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI----LNAMACVRKVSEADDV 264 (693)
Q Consensus 192 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----l~~~~~~~~~~~a~~~ 264 (693)
.|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++. .|+.+.. .......|++++|..-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999988865 35678999999999999999999999888764 5665544 4445567889999988
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCCh---hhHHHHHHHHHHcCCchHHHHHHHHhHHCCccc
Q 005512 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL---VSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341 (693)
Q Consensus 265 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 341 (693)
+..++.... .-..+|+.|...+-..|+...|+..|++...-|+ ..|-.|...|-..+.+++|+..|.+.... .|
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 888877642 3356788899999999999999999999866443 57888999999999999999999888765 55
Q ss_pred C-cchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHH
Q 005512 342 D-SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMIS 417 (693)
Q Consensus 342 ~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~ 417 (693)
+ .+.+..+...|...|.++.|...++..+... +.-...|+.|..++-..|++.+|++.+.+... ....+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4 4567777777888999999999999998753 23367889999999999999999999998873 35678899999
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCH
Q 005512 418 GYGMHGHGREALFLFDQMKALIKPD-HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR-PEHYACMVDMLGRAGKL 495 (693)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 495 (693)
.|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|...+++.+ .+.|+ ...|+.+...|-..|+.
T Consensus 363 i~~E~~~~e~A~~ly~~al~-v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE-VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHhccchHHHHHHHHHHh-hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999888 5555 5779999999999999999999999987 57776 56899999999999999
Q ss_pred HHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHH
Q 005512 496 NEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEAN 565 (693)
Q Consensus 496 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 565 (693)
+.|.+.+.+. .+.|. ....+.|.+.+...|+..+|+..|+.+++++|+.+.+|..|+...--..+|.+=.
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchH
Confidence 9999999887 66675 6678889999999999999999999999999999999999988876666666533
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-23 Score=172.12 Aligned_cols=93 Identities=55% Similarity=0.914 Sum_probs=71.1
Q ss_pred ceeEEEECCEEEEEEeCCCCCCChHHHHHHHH-HHHHHHHHcCCcCCCc------------ce--------eeeeccccC
Q 005512 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELA-KLMDRIRREGYTPDLN------------FP--------FVFGLLNSG 639 (693)
Q Consensus 581 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~m~~~g~~pd~~------------~~--------~~~~~~~~~ 639 (693)
|+||+++ |.|++|+.+||+...+.+... .....++..|+.++.. .. +||||+++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~- 76 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT- 76 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce-
Confidence 6899875 999999999999844333221 2223333334433221 00 89999988
Q ss_pred CCCeEEEEecc-cccCCCCCcccccccccCceEEEecCCcccccc
Q 005512 640 PGSAIRIKKNL-RVCGDCHTATKFISKVTGREIIVRDAHRFHHFK 683 (693)
Q Consensus 640 ~~~~~~~~~~l-~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~ 683 (693)
+|+||+ |+|+|||+++|+||++++|+|+|||.+|||||+
T Consensus 77 -----~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 77 -----RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred -----eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 899998 999999999999999999999999999999996
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-18 Score=189.30 Aligned_cols=419 Identities=12% Similarity=0.006 Sum_probs=260.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 005512 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191 (693)
Q Consensus 112 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 191 (693)
+......+.+.|++++|+..|++.+.. .|+...|..+..++...|++++|...+..+++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344556667777777777777776653 4565666666666666777777777777666654 2244456666666666
Q ss_pred CCCHHHHHHHhccCCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHH
Q 005512 192 CGRVDVCRQLFDEMPERN---VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV 268 (693)
Q Consensus 192 ~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~ 268 (693)
.|++++|..-|......+ ......++..+.. ..+........+.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~----------------------------- 253 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET----------------------------- 253 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc-----------------------------
Confidence 666666665554322111 0000111110000 1111111111111
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCCh---hhHHHHHHHH---HHcCCchHHHHHHHHhHHCC-ccc
Q 005512 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL---VSWTSMIEAY---AQADLPLEALEVYRQMILRR-VLP 341 (693)
Q Consensus 269 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p 341 (693)
. +.+...+..+ ..|........+..-++...+-+. ..+..+...+ ...+++++|++.|++..+.+ ..|
T Consensus 254 ---~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~ 328 (615)
T TIGR00990 254 ---K-PENLPSVTFV-GNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGE 328 (615)
T ss_pred ---C-CCCCCCHHHH-HHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCCh
Confidence 1 1111111111 112111111111111111111111 1111111111 22356777777777777654 223
Q ss_pred -CcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHH
Q 005512 342 -DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMIS 417 (693)
Q Consensus 342 -~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~ 417 (693)
+...+..+...+...|++++|...+..+++.. +.....+..+...|...|++++|...|+++.+ .+...|..+..
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 407 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 22345555555666777777777777777643 23355667777888888999999999887753 45778888889
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH
Q 005512 418 GYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497 (693)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 497 (693)
.|...|++++|+..|++.....+.+...+..+..++.+.|++++|...++...+ ..+.+...++.+...|...|++++
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHH
Confidence 999999999999999998874444567777888889999999999999999886 344567788889999999999999
Q ss_pred HHHHHHhC-CCCCCh-h-------hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 005512 498 AREFIERM-PIRPDA-G-------VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIR 568 (693)
Q Consensus 498 A~~~~~~m-~~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 568 (693)
|.+.|++. ...|+. . .++..+..+...|++++|+..++++++++|++...+..++.+|.+.|++++|.+.|
T Consensus 486 A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 486 AIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999885 333321 1 11222223445699999999999999999999889999999999999999999999
Q ss_pred HHHHhC
Q 005512 569 ALMKRR 574 (693)
Q Consensus 569 ~~m~~~ 574 (693)
++..+.
T Consensus 566 e~A~~l 571 (615)
T TIGR00990 566 ERAAEL 571 (615)
T ss_pred HHHHHH
Confidence 998764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-19 Score=184.96 Aligned_cols=297 Identities=13% Similarity=0.114 Sum_probs=200.5
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---hhhHHHHHHHHHhCC
Q 005512 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD---VFVGNSLIAMYGKCG 193 (693)
Q Consensus 117 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g 193 (693)
..+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34456677777777777777653 22344666677777777777777777777776432221 245778888899999
Q ss_pred CHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHH
Q 005512 194 RVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVD 270 (693)
Q Consensus 194 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~ 270 (693)
++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++++.+.+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 99999999988865 4567888899999999999999999999887643322110
Q ss_pred hCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhh
Q 005512 271 NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347 (693)
Q Consensus 271 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 347 (693)
....+..+...|.+.|++++|...|+++.+ .+...+..+...|.+.|++++|++.|+++...+......++.
T Consensus 179 -----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 253 (389)
T PRK11788 179 -----IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLP 253 (389)
T ss_pred -----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHH
Confidence 011234566777788888888888887643 234567777788888888888888888887653222234455
Q ss_pred hHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC--CCCHhHHHHHHHHHHh---c
Q 005512 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK--QKNVISWSTMISGYGM---H 422 (693)
Q Consensus 348 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~---~ 422 (693)
.+..++...|++++|...+..+.+.. |+...+..++..|.+.|++++|..+|+++. .|+..+++.++..+.. +
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCC
Confidence 56666666666666666666666543 344444666777777777777777776655 3666666666666553 4
Q ss_pred CChHHHHHHHHHHHhc-cCCChh
Q 005512 423 GHGREALFLFDQMKAL-IKPDHI 444 (693)
Q Consensus 423 g~~~~A~~~~~~m~~~-~~p~~~ 444 (693)
|+.++++.+|++|.+. ++|++.
T Consensus 332 g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 332 GRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred ccchhHHHHHHHHHHHHHhCCCC
Confidence 4667777777777665 555444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-18 Score=172.59 Aligned_cols=415 Identities=14% Similarity=0.128 Sum_probs=325.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCc
Q 005512 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCY 226 (693)
Q Consensus 150 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~ 226 (693)
+..-.-+.|++.+|++--..+-+.+ +.+....-.+-..|....+++....--..... .-..+|..+.+.+-..|+.
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3344556788888887655544433 22233333334455666665544332222111 2356899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHH--H--HHHHHhcCCchHHHHHHHHHHHhCCCCchh-HHHHHHHHHHHcCCchhHHHHHh
Q 005512 227 EEGLLLFKRMMDEGIRPNRVV--I--LNAMACVRKVSEADDVCRVVVDNGLDLDQS-LQNAAMVMYARCGRMDMARRFFE 301 (693)
Q Consensus 227 ~~A~~~~~~m~~~g~~p~~~t--~--l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~ 301 (693)
++|+.+|+.+++. +|+... . ..++...|+.+.|.+.+...++.. |+.. +.+-+.......|++++|...+.
T Consensus 133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999986 444332 2 667778899999999999988764 4433 34556666777899999999998
Q ss_pred cccCCC---hhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccC-cchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Q 005512 302 GILNKD---LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD-SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377 (693)
Q Consensus 302 ~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~ 377 (693)
+..+.+ .+.|+.|...+-.+|+...|+..|++.... .|+ ...|..+-..+...+.++.|...+..+.... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 875533 468999999999999999999999998865 454 3467777777777788888887777766532 334
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhcCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 005512 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQ--KN-VISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACS 454 (693)
Q Consensus 378 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~ 454 (693)
..++..|...|-..|.++-|+..+++..+ |+ ...||.|..++-..|+..+|...|.+.....+.-....+.|...+.
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56666777889999999999999999874 43 5689999999999999999999999998843334678899999999
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHH
Q 005512 455 HAGLIDEGWECFNSMLRDFGVAPR-PEHYACMVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAE 531 (693)
Q Consensus 455 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 531 (693)
..|.+++|..+|....+ +.|. ....+.|...|-..|++++|+..+++. .++|+ ...++.+...|...|+.+.|.
T Consensus 366 E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 99999999999998874 4554 456889999999999999999999887 78886 678899999999999999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 532 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
+.+.+++..+|.-..++..|+.+|-.+|++.+|..-+++..+-.
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999988999999999999999999999999987643
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=182.67 Aligned_cols=294 Identities=11% Similarity=0.055 Sum_probs=220.4
Q ss_pred HHHHHcCCchhHHHHHhcccCC---ChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccC---cchhhhHHHHhhcccc
Q 005512 285 VMYARCGRMDMARRFFEGILNK---DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD---SVTFLGVIRACSSLAS 358 (693)
Q Consensus 285 ~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~ 358 (693)
..+...|++++|...|.++.+. +..+|..+...+.+.|++++|+.+++.+...+..++ ...+..+...+...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445667777777777776432 334566677777777777777777777765432211 1345556666777777
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCC--C------HhHHHHHHHHHHhcCChHHHHH
Q 005512 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK--N------VISWSTMISGYGMHGHGREALF 430 (693)
Q Consensus 359 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~ 430 (693)
++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+. + ...|..+...+.+.|++++|+.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777776642 345667788888888888888888888887632 1 1245667778888999999999
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 005512 431 LFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP 509 (693)
Q Consensus 431 ~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 509 (693)
.|+++.+..+.+...+..+...+.+.|++++|.++++++.+. +-......++.++.+|.+.|++++|.+.++++ ...|
T Consensus 202 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999998744334567788888999999999999999998763 22222456788999999999999999999987 4567
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCccCCc
Q 005512 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYAS---SGKRIEANRIRALMKRRGVKKITG 581 (693)
Q Consensus 510 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 581 (693)
+...+..+...+.+.|++++|..+++++++..|++. .+..++..+.. .|+.+++..++++|.+++++++|.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 777778888899999999999999999999999775 56666666554 569999999999999999988875
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-16 Score=175.94 Aligned_cols=350 Identities=11% Similarity=0.051 Sum_probs=271.8
Q ss_pred hCCCHHHHHHHhccCCCC------CcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH--HHHHHhcCCchHHH
Q 005512 191 KCGRVDVCRQLFDEMPER------NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI--LNAMACVRKVSEAD 262 (693)
Q Consensus 191 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--l~~~~~~~~~~~a~ 262 (693)
+..+++.-.-.|...++. +..-...++..+.+.|++++|+.+++..+.....+....+ +.+....|+++.|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 455666666666655541 2334455677888889999999999988877555444433 55566789999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCc
Q 005512 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339 (693)
Q Consensus 263 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 339 (693)
+.++.+.+.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+.+.|++++|...++++....
T Consensus 97 ~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~- 174 (656)
T PRK15174 97 QVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV- 174 (656)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-
Confidence 9999988875 44566788889999999999999999998754 356688889999999999999999999887653
Q ss_pred ccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHH
Q 005512 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMI 416 (693)
Q Consensus 340 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li 416 (693)
|+.......+..+...|++++|...+..+++....++......+...|.+.|++++|...|+++.. .+...+..+.
T Consensus 175 -P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg 253 (656)
T PRK15174 175 -PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG 253 (656)
T ss_pred -CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 333322222344778899999999999887765334445555667788999999999999998863 4677888899
Q ss_pred HHHHhcCChHH----HHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 005512 417 SGYGMHGHGRE----ALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492 (693)
Q Consensus 417 ~~~~~~g~~~~----A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 492 (693)
..|.+.|++++ |+..|++..+..+.+...+..+...+...|++++|...++.+.+ .-+.+...+..+...|.+.
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQV 331 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHC
Confidence 99999999986 89999999874444567888999999999999999999999886 2333466777889999999
Q ss_pred CCHHHHHHHHHhC-CCCCChhhHHH-HHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 005512 493 GKLNEAREFIERM-PIRPDAGVWGS-LLGACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 493 g~~~~A~~~~~~m-~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 545 (693)
|++++|.+.++++ ...|+...+.. +..++...|+.++|+..++++++..|++.
T Consensus 332 G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 332 GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999987 35566544443 45678899999999999999999998753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.9e-16 Score=171.19 Aligned_cols=445 Identities=11% Similarity=0.024 Sum_probs=268.1
Q ss_pred HHHHHHHHHHccCChHHHHHHhcccC-CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc
Q 005512 79 LVTNLVSQYASLGSISHAFSLFSSVS-DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157 (693)
Q Consensus 79 ~~~~li~~y~~~g~~~~A~~~f~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 157 (693)
.+..+...|.+.|+++.|...|++.. ..|+...|..+..+|.+.|++++|++.+++.++.. +.+...+..+..++...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 34567788899999999999999863 33577889999999999999999999999998854 22455788888899999
Q ss_pred CChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005512 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237 (693)
Q Consensus 158 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 237 (693)
|++++|...+..+...+...+... ..++.-+.+......+...++.-+ ++..++..+.. |......+.+..-+.+-.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 999999998877665532222222 222222222222344555554432 23344443332 333222222222222111
Q ss_pred HCCCCCCHH-HHHHH------HHhcCCchHHHHHHHHHHHhC-CCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChh
Q 005512 238 DEGIRPNRV-VILNA------MACVRKVSEADDVCRVVVDNG-LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309 (693)
Q Consensus 238 ~~g~~p~~~-t~l~~------~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~ 309 (693)
+ ..++.. .++.. ....+.+++|.+.+..+++.+ ..|+ +..
T Consensus 285 ~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~------------------------------~a~ 332 (615)
T TIGR00990 285 E--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK------------------------------EAI 332 (615)
T ss_pred c--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh------------------------------hHH
Confidence 1 111100 00000 011234444445544444433 1111 122
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhHHCCcccC-cchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 005512 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPD-SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388 (693)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 388 (693)
.|+.+...+...|++++|+..|++..+. .|+ ..+|..+...+...|++++|...+..+++.. +.+..++..+...|
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444444444555555555555554433 222 2234444444445555555555555554432 33455666677778
Q ss_pred HhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005512 389 VKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWEC 465 (693)
Q Consensus 389 ~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 465 (693)
...|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.....+.+...+..+..++...|++++|...
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHH
Confidence 888888888888887763 34567777788888888899999888888774444567788888888888999999988
Q ss_pred HHHhHHhhCCCCCh-h-------HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHH
Q 005512 466 FNSMLRDFGVAPRP-E-------HYACMVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAK 535 (693)
Q Consensus 466 ~~~~~~~~~~~~~~-~-------~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 535 (693)
|+...+ +.|+. . .++.....+...|++++|.+++++. ...|+ ...+..+...+.+.|++++|+..++
T Consensus 490 ~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 490 FDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 888765 22221 1 1222223344568999999999885 44554 4568888888999999999999999
Q ss_pred HHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 536 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
++.++.+.....+ ....+.+|.++....++
T Consensus 567 ~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 567 RAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 9988876543221 22344455555544444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-15 Score=170.49 Aligned_cols=393 Identities=10% Similarity=0.019 Sum_probs=214.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhC
Q 005512 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192 (693)
Q Consensus 113 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 192 (693)
.-.+......|+.++|++++.+..... +.+...+..+..++...|++++|.++++..++.. +.+...+..+...+.+.
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334455566777777777777776522 2333446666677777777777777777777653 23445556666777777
Q ss_pred CCHHHHHHHhccCCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHH
Q 005512 193 GRVDVCRQLFDEMPE--R-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVV 269 (693)
Q Consensus 193 g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~ 269 (693)
|++++|...+++..+ | +.. |..+...+...|++++|+..++++.+.. |
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P-------------------------- 147 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--P-------------------------- 147 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--C--------------------------
Confidence 777777777776643 2 334 6666666777777777777777766542 2
Q ss_pred HhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChh--------hHHHHHHHHH-----HcCCc---hHHHHHHHH
Q 005512 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV--------SWTSMIEAYA-----QADLP---LEALEVYRQ 333 (693)
Q Consensus 270 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~ 333 (693)
.+..++..+..++.+.|..++|...++.... ++. ....++.... ..+++ ++|++.++.
T Consensus 148 -----~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 148 -----QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred -----CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 2333444566666677777777777776654 211 0111111111 11112 445555555
Q ss_pred hHHC-CcccCcc-hhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCC---
Q 005512 334 MILR-RVLPDSV-TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN--- 408 (693)
Q Consensus 334 m~~~-g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~--- 408 (693)
+.+. ...|+.. .+... ....+..+...|++++|+..|+.+.+.+
T Consensus 222 ll~~~~~~p~~~~~~~~a-------------------------------~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~ 270 (765)
T PRK10049 222 LEALWHDNPDATADYQRA-------------------------------RIDRLGALLARDRYKDVISEYQRLKAEGQII 270 (765)
T ss_pred HHhhcccCCccchHHHHH-------------------------------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCC
Confidence 5432 1112111 01000 0000112223455555555555554321
Q ss_pred Hh-HHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhC--------
Q 005512 409 VI-SWSTMISGYGMHGHGREALFLFDQMKALIKPD-----HITFVSVLSACSHAGLIDEGWECFNSMLRDFG-------- 474 (693)
Q Consensus 409 ~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------- 474 (693)
+. .--.+...|...|++++|+..|+++... .|. ......+..++...|++++|.++++.+.+...
T Consensus 271 P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~-~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 271 PPWAQRWVASAYLKLHQPEKAQSILTELFYH-PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc-CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence 10 1111344555556666666666655442 111 12334444455556666666666655543200
Q ss_pred --CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh
Q 005512 475 --VAPR---PEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547 (693)
Q Consensus 475 --~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 547 (693)
-.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+...|++++|+..++++++++|+++..
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l 429 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINL 429 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Confidence 0122 123455566666777777777777665 2233 45566666666777777777777777777777777777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 548 YVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 548 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
+..++..+...|++++|..+++.+.+.
T Consensus 430 ~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 430 EVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777777777777777777777776654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-16 Score=173.80 Aligned_cols=367 Identities=14% Similarity=0.048 Sum_probs=235.7
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHh
Q 005512 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQ 222 (693)
Q Consensus 146 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 222 (693)
-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+ .+...+..+...+..
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33344444555566666666666555422 23333455566666666666666666665322 233445555555555
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhc
Q 005512 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302 (693)
Q Consensus 223 ~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 302 (693)
.|++++|+..+++..+. . +.+.. +..+..++...|+.++|...+++
T Consensus 96 ~g~~~eA~~~l~~~l~~--------------------------------~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 96 AGQYDEALVKAKQLVSG--------------------------------A-PDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred CCCHHHHHHHHHHHHHh--------------------------------C-CCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666665555443 1 23344 67788889999999999999998
Q ss_pred ccC--C-ChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchh
Q 005512 303 ILN--K-DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379 (693)
Q Consensus 303 ~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~ 379 (693)
+.+ | +...+..+...+.+.+..++|++.+++... .|+.. .-+. ...+ ....+.
T Consensus 142 al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~---~~l~-------~~~~----~~~~r~------- 197 (765)
T PRK10049 142 ALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEK---RDLE-------ADAA----AELVRL------- 197 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHH---HHHH-------HHHH----HHHHHh-------
Confidence 854 2 455667778888888999999998876653 33310 0000 0000 000010
Q ss_pred HHHHHHHHHHhhCCH---HHHHHHHHhcCC-----CCHh-HH----HHHHHHHHhcCChHHHHHHHHHHHhcc--CCChh
Q 005512 380 LDTAVVDLYVKCGSL---MHARKVFDRMKQ-----KNVI-SW----STMISGYGMHGHGREALFLFDQMKALI--KPDHI 444 (693)
Q Consensus 380 ~~~~li~~y~k~g~~---~~A~~~~~~~~~-----~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~--~p~~~ 444 (693)
.+...+...+++ ++|++.++.+.+ |+.. .+ ...+..+...|+.++|+..|+++.+.- .|+.
T Consensus 198 ---~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~- 273 (765)
T PRK10049 198 ---SFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW- 273 (765)
T ss_pred ---hcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-
Confidence 011111122233 566666666552 2211 11 111344567799999999999998752 1332
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC------------
Q 005512 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP--RPEHYACMVDMLGRAGKLNEAREFIERMP-IRP------------ 509 (693)
Q Consensus 445 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p------------ 509 (693)
....+..++...|++++|..+|+.+.+.....+ .......|..++...|++++|.++++++. ..|
T Consensus 274 a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~ 353 (765)
T PRK10049 274 AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI 353 (765)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence 222357789999999999999999875311111 13456777788999999999999999872 222
Q ss_pred -Ch---hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 510 -DA---GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 510 -~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
+. ..+..+...+...|+.++|+..+++++...|+++..+..++.++...|++++|.+.+++..+..
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 21 2344556778899999999999999999999999999999999999999999999999988754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-14 Score=152.21 Aligned_cols=560 Identities=13% Similarity=0.039 Sum_probs=370.6
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHhcCCCCc---ccCCCChhhHHHHHHHhcCcCcHHHHHHHHHHhccC---------
Q 005512 5 VVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQ---QTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFY--------- 72 (693)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~--------- 72 (693)
..+|..+...|.+.|+.++.+.+++....... .+...+......++.++......+..+..-....+.
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 35799999999999999999999988652110 011112222333444443111111111111000000
Q ss_pred -----CCCCHhHHHHHHHHHHccCC--hHHHHHHhcccCCC-C-CcccHHHHHHHH--HhCCChhHHHHHHHHHHHC--C
Q 005512 73 -----HHHDLFLVTNLVSQYASLGS--ISHAFSLFSSVSDS-C-DLFLWNVMIRAF--VDNRQFDRSLQLYAQMREL--D 139 (693)
Q Consensus 73 -----~~~~~~~~~~li~~y~~~g~--~~~A~~~f~~~~~~-~-~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--~ 139 (693)
..+...++... .|...|. ++.|.+.|...... | |+- -.|.+++ ...|++..|+.+|...+.. .
T Consensus 121 ~ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil--~LlGkA~i~ynkkdY~~al~yyk~al~inp~ 196 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLKQSPDNIL--ALLGKARIAYNKKDYRGALKYYKKALRINPA 196 (1018)
T ss_pred HHhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHhhCCcchH--HHHHHHHHHhccccHHHHHHHHHHHHhcCcc
Confidence 01111111111 1222333 58898888877443 2 332 2334444 4578999999999997653 2
Q ss_pred CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCC---CHHHHHHHhccCCC---CCcchH
Q 005512 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG---RVDVCRQLFDEMPE---RNVVTW 213 (693)
Q Consensus 140 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~m~~---~~~~~~ 213 (693)
.+||...- +-.++.+.++.+.|+..|..+.+.++ .++..+-.|..+-.... .+..+..++...-. .|++..
T Consensus 197 ~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l 273 (1018)
T KOG2002|consen 197 CKADVRIG--IGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVAL 273 (1018)
T ss_pred cCCCccch--hhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHH
Confidence 44555432 22445688999999999999998653 23333333333222233 34556665554432 578899
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCC----CCCCHHHH-HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 005512 214 SSLTGAYAQNGCYEEGLLLFKRMMDEG----IRPNRVVI-LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288 (693)
Q Consensus 214 ~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 288 (693)
+.|.+-|.-.|+++.+..+...+.... +..+.+-. .+++-..|+++.|.+.+....+......+..+--|..+|.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 999999999999999999999887764 12222222 7888899999999999998887654433445567889999
Q ss_pred HcCCchhHHHHHhcccC---CChhhHHHHHHHHHHcC----CchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHH
Q 005512 289 RCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQAD----LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ 361 (693)
Q Consensus 289 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 361 (693)
+.|+++.|...|+.+.. .+..+...+...|+..+ ..+.|..++.+..+.- +.|...|..+-..+.. ++...
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~ 431 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWA 431 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHH
Confidence 99999999999999854 34556677777777765 4566666666665542 2345556555554433 33333
Q ss_pred HHHHHHHH----HHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC-------CCH------hHHHHHHHHHHhcCC
Q 005512 362 ARTVHGII----IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ-------KNV------ISWSTMISGYGMHGH 424 (693)
Q Consensus 362 a~~i~~~~----~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~~~g~ 424 (693)
....+..+ ...+-.+.+.+.|.+...+...|+++.|...|.+... +|. .+--.+...+-..++
T Consensus 432 sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~ 511 (1018)
T KOG2002|consen 432 SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHD 511 (1018)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhh
Confidence 35554443 3456668889999999999999999999999988763 222 122234556667789
Q ss_pred hHHHHHHHHHHHhccCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 005512 425 GREALFLFDQMKALIKPDHI-TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503 (693)
Q Consensus 425 ~~~A~~~~~~m~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 503 (693)
.+.|.+.|..+.. .-|+-+ .|.-++......+...+|...+..+.. ....++..++.+.+.+.+...+..|.+-|+
T Consensus 512 ~~~A~e~Yk~Ilk-ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~ 588 (1018)
T KOG2002|consen 512 TEVAEEMYKSILK-EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFE 588 (1018)
T ss_pred hhHHHHHHHHHHH-HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHH
Confidence 9999999999987 445543 355554333455788899999998886 667777788888888888888888888555
Q ss_pred hC----CCCCChhhHHHHHHHHH------------hcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 005512 504 RM----PIRPDAGVWGSLLGACR------------IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567 (693)
Q Consensus 504 ~m----~~~p~~~~~~~ll~~~~------------~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 567 (693)
.. ...+|..+.-+|.+.|. ..+..+.|+++|.++++.+|.|..+-+.++-+++..|++.+|..+
T Consensus 589 ~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dI 668 (1018)
T KOG2002|consen 589 TILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDI 668 (1018)
T ss_pred HHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHH
Confidence 54 33467777777766553 223568899999999999999998889999999999999999999
Q ss_pred HHHHHhCCC
Q 005512 568 RALMKRRGV 576 (693)
Q Consensus 568 ~~~m~~~~~ 576 (693)
|.+.++...
T Consensus 669 FsqVrEa~~ 677 (1018)
T KOG2002|consen 669 FSQVREATS 677 (1018)
T ss_pred HHHHHHHHh
Confidence 999988644
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-15 Score=167.84 Aligned_cols=329 Identities=13% Similarity=-0.005 Sum_probs=266.3
Q ss_pred CCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHH
Q 005512 240 GIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIE 316 (693)
Q Consensus 240 g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 316 (693)
|-..+...++..+...|+.+.|..++..++....... .....++......|++++|...|+++.. .+...|..+..
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~ 118 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVAS 118 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 3344445558888899999999999999998865444 4444555677789999999999999854 35567888999
Q ss_pred HHHHcCCchHHHHHHHHhHHCCccc-CcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHH
Q 005512 317 AYAQADLPLEALEVYRQMILRRVLP-DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395 (693)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 395 (693)
.+.+.|++++|+..|+++... .| +...+..+...+...|++++|...+..+......+. ..+..+ ..+.+.|+++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-~a~~~~-~~l~~~g~~~ 194 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-DMIATC-LSFLNKSRLP 194 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-HHHHHH-HHHHHcCCHH
Confidence 999999999999999999875 44 455677788889999999999999998877653333 333333 3478899999
Q ss_pred HHHHHHHhcCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHH----HHHHHH
Q 005512 396 HARKVFDRMKQK----NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDE----GWECFN 467 (693)
Q Consensus 396 ~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~ 467 (693)
+|...++.+.+. +...+..+...+...|++++|+..|++..+..+.+...+..+...+...|++++ |...++
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 999999987642 333445566788899999999999999987544456778889999999999986 899999
Q ss_pred HhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 005512 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 468 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 545 (693)
.+.+ -.+.+...+..+...+.+.|++++|...+++. ...|+ ...+..+..++...|++++|+..++++++.+|+++
T Consensus 275 ~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 275 HALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 9885 33446778999999999999999999999987 44564 56677778889999999999999999999999887
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 546 GRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
..+..++.++...|+.++|...+++..+..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 777778899999999999999999987653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-14 Score=153.39 Aligned_cols=484 Identities=14% Similarity=0.116 Sum_probs=309.1
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCCCCCcccHHHHHH---HHHhC---CChhHHHHHHHHHHHCCCCCCcccH
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIR---AFVDN---RQFDRSLQLYAQMRELDINPDKFTF 147 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~---~~~~~---g~~~~A~~~~~~m~~~~~~p~~~t~ 147 (693)
++|+.+.. ...+.++|+.+.|...|.+...- |+..-++++. .-... ..+..++.++...-... .-|+...
T Consensus 198 ~aD~rIgi--g~Cf~kl~~~~~a~~a~~ralqL-dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l 273 (1018)
T KOG2002|consen 198 KADVRIGI--GHCFWKLGMSEKALLAFERALQL-DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVAL 273 (1018)
T ss_pred CCCccchh--hhHHHhccchhhHHHHHHHHHhc-ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHH
Confidence 45555432 23456777777777777766443 3322222221 11111 23445555555544332 2356667
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCC--hhhHHHHHHHHHhCCCHHHHHHHhccCCC--CC--cchHHHHHHHHH
Q 005512 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYWSD--VFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RN--VVTWSSLTGAYA 221 (693)
Q Consensus 148 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~--~~~~~~li~~~~ 221 (693)
+.|.+-+.-.|++..+..+...++....... ...|--+..+|-..|++++|...|.+..+ +| +..+--+...|.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 7777777777777777777777776542111 12344567777777888887777766554 22 334455667777
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCHH-HH-HHHHH--hcC----CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCc
Q 005512 222 QNGCYEEGLLLFKRMMDEGIRPNRV-VI-LNAMA--CVR----KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293 (693)
Q Consensus 222 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~-l~~~~--~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 293 (693)
+.|+.+.+...|+...+. .||.. |+ +-+|. ..+ ..+.|..+.....+.- +.|...|-.+..+|-...-+
T Consensus 354 ~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~ 430 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW 430 (1018)
T ss_pred HhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH
Confidence 777888887777777665 34433 22 22222 221 2355555555555543 44555666666665544322
Q ss_pred hhHHHHHhcc--------cCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHC---CcccCcc------hhhhHHHHhhcc
Q 005512 294 DMARRFFEGI--------LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR---RVLPDSV------TFLGVIRACSSL 356 (693)
Q Consensus 294 ~~A~~~f~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~------t~~~ll~a~~~~ 356 (693)
.++.+|... ....+...|.+...+...|++++|...|.+.... -..+|.. +--.+-......
T Consensus 431 -~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 431 -ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred -HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 223333322 2245667788888888888888888888877654 2233332 111233344556
Q ss_pred ccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh-------CCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChH
Q 005512 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC-------GSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGR 426 (693)
Q Consensus 357 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~-------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 426 (693)
++.+.|.+.|..+++.. | ..|++|.+. +...+|...+.... ..|+..|.-+...|.....+.
T Consensus 510 ~~~~~A~e~Yk~Ilkeh--p------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKEH--P------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred hhhhHHHHHHHHHHHHC--c------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 78888888888888753 1 234444444 56677888887766 356777777777888888888
Q ss_pred HHHHHHHHHHhc--cCCChhHHHHHHHHHHhc------------CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 005512 427 EALFLFDQMKAL--IKPDHITFVSVLSACSHA------------GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492 (693)
Q Consensus 427 ~A~~~~~~m~~~--~~p~~~t~~~ll~~~~~~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 492 (693)
.|.+-|+..... ..+|..+..+|.+.|... +..++|+++|.++++ ..+.|...-|-+.-.++..
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhc
Confidence 888888877666 557888877887766532 456778888888775 5556777778888888899
Q ss_pred CCHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCchhHHHHHHHHHhcCChHHHHHHH
Q 005512 493 GKLNEAREFIERMP--IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD--AENPGRYVILSNIYASSGKRIEANRIR 568 (693)
Q Consensus 493 g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~ 568 (693)
|++.+|..+|.+.. ...+..+|-.+...|...|++-.|+++|+..++.. .+++.+...|+.++.++|++.+|.+..
T Consensus 660 g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999998872 22356778888888999999999999999887643 356778888999999999999998888
Q ss_pred HHHHhCC
Q 005512 569 ALMKRRG 575 (693)
Q Consensus 569 ~~m~~~~ 575 (693)
.......
T Consensus 740 l~a~~~~ 746 (1018)
T KOG2002|consen 740 LKARHLA 746 (1018)
T ss_pred HHHHHhC
Confidence 7776543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-14 Score=154.17 Aligned_cols=422 Identities=8% Similarity=0.026 Sum_probs=268.8
Q ss_pred HHHccCChHHHHHHhcccCCC-CCc-ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCccc-HHHH--HHHHhccCCh
Q 005512 86 QYASLGSISHAFSLFSSVSDS-CDL-FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT-FPFV--LKACGYLRDI 160 (693)
Q Consensus 86 ~y~~~g~~~~A~~~f~~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~l--l~~~~~~~~~ 160 (693)
...+.|+++.|+..|++.... |+. .....++..+...|+.++|+..+++.. .|+... +..+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 467889999999999987543 332 123388888888899999999999887 343333 3333 4467788999
Q ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHh--cCCchHHHHHHHHHHH
Q 005512 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ--NGCYEEGLLLFKRMMD 238 (693)
Q Consensus 161 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 238 (693)
+.|.++++.+++... .+..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999999998863 3567777888889999999999999998877443322223334443 5566568888988887
Q ss_pred CCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCC---ChhhH--HH
Q 005512 239 EGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK---DLVSW--TS 313 (693)
Q Consensus 239 ~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~--~~ 313 (693)
.. |+. ...+..++....+.|-...|.++..+-+.- ....| ..
T Consensus 198 ~~--P~n-------------------------------~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~ 244 (822)
T PRK14574 198 LA--PTS-------------------------------EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERD 244 (822)
T ss_pred hC--CCC-------------------------------HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHH
Confidence 63 332 222233333444444444444443332210 00000 00
Q ss_pred HHHHHH---------HcCC---chHHHHHHHHhHHC-CcccCcch-h----hhHHHHhhccccHHHHHHHHHHHHHhcCC
Q 005512 314 MIEAYA---------QADL---PLEALEVYRQMILR-RVLPDSVT-F----LGVIRACSSLASFQQARTVHGIIIHCFLG 375 (693)
Q Consensus 314 li~~~~---------~~g~---~~~A~~~~~~m~~~-g~~p~~~t-~----~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 375 (693)
.+.-.+ ..++ .+.|+.-++.+... +-.|.... | .--+-++...++..++...++.+...+.+
T Consensus 245 ~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~ 324 (822)
T PRK14574 245 AAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK 324 (822)
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC
Confidence 000000 0111 23455555554431 21232211 1 12345666777778888888887777766
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHHhcCCC---------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccC------
Q 005512 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQK---------NVISWSTMISGYGMHGHGREALFLFDQMKALIK------ 440 (693)
Q Consensus 376 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------ 440 (693)
....+-.++.++|...+++++|..+|+.+... +......|.-+|...+++++|..+++++....+
T Consensus 325 ~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~ 404 (822)
T PRK14574 325 MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY 404 (822)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence 56667777888888888888888888876421 222345677778888888888888888876311
Q ss_pred ------CCh---hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 005512 441 ------PDH---ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD 510 (693)
Q Consensus 441 ------p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 510 (693)
||. ..+..++..+...|++.+|++.++.+.. .-+-|......+.+.+...|++.+|++.++.. ...|+
T Consensus 405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 221 2234455667778888888888888865 45557777788888888888888888888665 34454
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh
Q 005512 511 -AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547 (693)
Q Consensus 511 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 547 (693)
..+......+....+++.+|..+.+.+++..|+++.+
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 4444555566677788888888888888888877643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-14 Score=155.61 Aligned_cols=414 Identities=13% Similarity=-0.002 Sum_probs=270.3
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHH
Q 005512 119 FVDNRQFDRSLQLYAQMRELDINPDKF-TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197 (693)
Q Consensus 119 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 197 (693)
..++|+++.|++.|++..+.. |+.. ....++..+...|+.++|...++..+... ........++...|...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 356666666666666665532 3321 11145555555566666666666555110 1111222222445555566666
Q ss_pred HHHHhccCCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCC
Q 005512 198 CRQLFDEMPE--R-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLD 274 (693)
Q Consensus 198 A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~ 274 (693)
|.++|+++.+ | |...+..++..+...++.++|++.++++... .
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~----------------------------------d 166 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER----------------------------------D 166 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc----------------------------------C
Confidence 6666665544 1 2334444555555556666666555555433 2
Q ss_pred CchhHHHHHHHHHHHcCCchhHHHHHhcccC--C-ChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhh---
Q 005512 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILN--K-DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG--- 348 (693)
Q Consensus 275 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--- 348 (693)
|+...+..++..+...++..+|.+.++++.+ | +...+..+.....+.|-...|+++..+- |+.++-..
T Consensus 167 p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~ 240 (822)
T PRK14574 167 PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ 240 (822)
T ss_pred cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH
Confidence 3333344455555556667669999999854 3 4566788888999999999998877653 22221111
Q ss_pred --------HHH-Hh----hcccc---HHHHHHHHHHHHHh-cC-CCchhH-HHHH---HHHHHhhCCHHHHHHHHHhcCC
Q 005512 349 --------VIR-AC----SSLAS---FQQARTVHGIIIHC-FL-GNQLAL-DTAV---VDLYVKCGSLMHARKVFDRMKQ 406 (693)
Q Consensus 349 --------ll~-a~----~~~~~---~~~a~~i~~~~~~~-~~-~~~~~~-~~~l---i~~y~k~g~~~~A~~~~~~~~~ 406 (693)
.++ +. ....+ .+.+..-++.+... +- ++.... ..+. +-++.+.|++.++++.|+.+..
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 110 00 01122 33444444444441 21 222122 2333 4456788999999999999984
Q ss_pred C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-c-----CCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC-
Q 005512 407 K----NVISWSTMISGYGMHGHGREALFLFDQMKAL-I-----KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV- 475 (693)
Q Consensus 407 ~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-----~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~- 475 (693)
+ ....-.++.++|...+++++|+.+|+++... - .++......|.-++...+++++|..+++.+.+....
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 3 2234566889999999999999999999664 1 223333578899999999999999999999862110
Q ss_pred ---------CCCh---hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 005512 476 ---------APRP---EHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541 (693)
Q Consensus 476 ---------~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 541 (693)
.|+. ..+..++..+...|++.+|++.++++ ...| |...+..+...+...|.+.+|+..++.+..++
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~ 480 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA 480 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Confidence 1221 23455678889999999999999998 3445 78888899999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 542 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
|++..+...++..+...|+|.+|..+.+.+.+..
T Consensus 481 P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 481 PRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998887654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.5e-14 Score=135.06 Aligned_cols=441 Identities=14% Similarity=0.088 Sum_probs=304.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCCh----hhHHHHHHHH
Q 005512 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF-VLKACGYLRDIEFGVKVHKDAVDSGYWSDV----FVGNSLIAMY 189 (693)
Q Consensus 115 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~ 189 (693)
|.+-|..+....+|+..|+-..+...-||.-.+.. +-+.+.+.+.+..|.+.++..+..-...+. .+.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 44556667788899999998888777777665432 234566778899999999988876433332 2345555567
Q ss_pred HhCCCHHHHHHHhccCCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH-------------------
Q 005512 190 GKCGRVDVCRQLFDEMPE--RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI------------------- 248 (693)
Q Consensus 190 ~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------------------- 248 (693)
.+.|.+++|...|+...+ ||..+--.|+-++..-|+.++..+.|.+|+.....||...|
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 889999999999998765 77665555566666789999999999999876444433211
Q ss_pred -HHHHHhcCCchHHHHHH---HHHHHhCCCCchh-------------HH--------HHHHHHHHHcCCchhHHHHHhcc
Q 005512 249 -LNAMACVRKVSEADDVC---RVVVDNGLDLDQS-------------LQ--------NAAMVMYARCGRMDMARRFFEGI 303 (693)
Q Consensus 249 -l~~~~~~~~~~~a~~~~---~~~~~~g~~~~~~-------------~~--------~~li~~y~~~g~~~~A~~~f~~~ 303 (693)
+.-.-+... ..|++.. ..++.--+.|+-. .+ -.-..-|.+.|+++.|.+++.-.
T Consensus 367 ~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 367 HLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 111111111 1122111 1111111111110 00 01123467889999998888877
Q ss_pred cCCChhhHHH----HHH-HHHHcC-CchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Q 005512 304 LNKDLVSWTS----MIE-AYAQAD-LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377 (693)
Q Consensus 304 ~~~~~~~~~~----li~-~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~ 377 (693)
..+|..+-++ |-. -|.+-| ++..|.+.-+...... +-|....+.--......|+++.|...+.+.+...-...
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ 524 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT 524 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH
Confidence 6665443322 211 222322 3555555444333211 11111111111222346899999999999987654444
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 005512 378 LALDTAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACS 454 (693)
Q Consensus 378 ~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~ 454 (693)
...||. .-.|-+.|++++|++.|-++. ..++...-.+.+.|....++..|++++.+....++.|+..+..|...|-
T Consensus 525 ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 525 EALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD 603 (840)
T ss_pred HHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence 445543 334778999999999998876 4677777778889999999999999998877767778899999999999
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCChhhHHHHHHH-HHhcCCHHHHHH
Q 005512 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPDAGVWGSLLGA-CRIHSNVELAEM 532 (693)
Q Consensus 455 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~-~~~~g~~~~a~~ 532 (693)
+.|+-.+|.+.+-.--+ -++.+.++...|..-|....-+++|+.+|++. -++|+.+-|..++.. +++.|++..|..
T Consensus 604 qegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred cccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999998876543 45668899999999999999999999999998 468999999999966 567899999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 005512 533 AAKALFDLDAENPGRYVILSNIYASSGK 560 (693)
Q Consensus 533 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 560 (693)
+++......|.+......|+.++...|.
T Consensus 682 ~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 682 LYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999888875
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-12 Score=126.09 Aligned_cols=322 Identities=12% Similarity=0.134 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHH---hcCcCcH---HHHHHHHHHhccCCCCCHhHH
Q 005512 7 TQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQ---CQTLQSL---KTLHAFTLRSRFYHHHDLFLV 80 (693)
Q Consensus 7 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ 80 (693)
+=|.++.. ...|.+..+.-+|+.|...+.. .++..=..+++- +.+.... ..-+-.+.+.| +.+..+
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~---vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~---E~S~~s- 189 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVD---VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG---EDSTSS- 189 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCC---CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc---cccccc-
Confidence 34444443 4457777888888888765522 233332233322 2222222 11111222222 222222
Q ss_pred HHHHHHHHccCChHHHHHHhcccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCh
Q 005512 81 TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160 (693)
Q Consensus 81 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 160 (693)
.|.|.+.+ -+|+..| + +..++..||.++++-...+.|.++|++-.....+.+..+||.+|.+-. +
T Consensus 190 -------WK~G~vAd--L~~E~~P-K-T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~ 254 (625)
T KOG4422|consen 190 -------WKSGAVAD--LLFETLP-K-TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----Y 254 (625)
T ss_pred -------cccccHHH--HHHhhcC-C-CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----h
Confidence 35566554 4444444 4 667899999999999999999999999988888999999999998754 3
Q ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHH----hccCCC----CCcchHHHHHHHHHhcCCchH-HHH
Q 005512 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL----FDEMPE----RNVVTWSSLTGAYAQNGCYEE-GLL 231 (693)
Q Consensus 161 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~----f~~m~~----~~~~~~~~li~~~~~~g~~~~-A~~ 231 (693)
..++++..+|+.....||.+|+|+++.+..+.|+++.|++. +.+|++ |...+|..+|..+.+.+++.+ |..
T Consensus 255 ~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 255 SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 44589999999999999999999999999999998876654 455543 888899999999999888755 444
Q ss_pred HHHHHHHC----C---CCCCHHHH----HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHH
Q 005512 232 LFKRMMDE----G---IRPNRVVI----LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300 (693)
Q Consensus 232 ~~~~m~~~----g---~~p~~~t~----l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 300 (693)
++.+.... . ..|+..-| +..|.++.+.+.|.++++.+....- |...|.. +
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N-------------~~~ig~~------~ 395 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN-------------WKFIGPD------Q 395 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-------------hhhcChH------H
Confidence 55554432 2 33444333 7778888888888888877654210 0000000 0
Q ss_pred hcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCC
Q 005512 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375 (693)
Q Consensus 301 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 375 (693)
...+-|..+....|+....+.-+..|..|.-.-.-|+..+...+++|....+.++...+++..++..|..
T Consensus 396 -----~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 396 -----HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 0122345566667777778888888888887777788888888888888888888888888887776643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-11 Score=124.57 Aligned_cols=493 Identities=11% Similarity=0.087 Sum_probs=363.7
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS--CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 151 (693)
|.++.+|..-+ ..-..++|+.++.+.-+- .....| -+|++..-++.|..++.+.++. ++.+...|.+..
T Consensus 377 P~sv~LWKaAV----elE~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa 447 (913)
T KOG0495|consen 377 PRSVRLWKAAV----ELEEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAA 447 (913)
T ss_pred CchHHHHHHHH----hccChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH
Confidence 45555555443 445666677777665331 133333 3445556677777777777664 566777777666
Q ss_pred HHHhccCChHHHHHHHHHHH----HhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC-----C-CcchHHHHHHHHH
Q 005512 152 KACGYLRDIEFGVKVHKDAV----DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE-----R-NVVTWSSLTGAYA 221 (693)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~-~~~~~~~li~~~~ 221 (693)
..=-..|+.+...++...-+ ..|+..+..-|-.=...+-+.|..-.+..+...... - --.+|+.-...|.
T Consensus 448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~ 527 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE 527 (913)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence 66666777777777665543 346666666666666666666666666655554432 1 2347777777888
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCHHHH-HHH---HHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHH
Q 005512 222 QNGCYEEGLLLFKRMMDEGIRPNRVVI-LNA---MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297 (693)
Q Consensus 222 ~~g~~~~A~~~~~~m~~~g~~p~~~t~-l~~---~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 297 (693)
+.+.++-|..+|...++. .|...++ +.+ --..|..+.-..++..++..- +.....|-....-+...|++..|+
T Consensus 528 k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred hcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHH
Confidence 888888888887777654 3443333 222 234466677777777776653 344555666667777889999999
Q ss_pred HHHhcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcC
Q 005512 298 RFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374 (693)
Q Consensus 298 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 374 (693)
.++.+..+ .+...|-+-+.....+..++.|..+|.+.... .|+...|..-...---++..++|.++++..++. +
T Consensus 605 ~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-f 681 (913)
T KOG0495|consen 605 VILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-F 681 (913)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-C
Confidence 98888744 25567888888888999999999999988764 456555554444445578889999999888875 3
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHH
Q 005512 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--K-NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLS 451 (693)
Q Consensus 375 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~ 451 (693)
+.-...|-.+.+.|-+.++++.|++.|..-.+ | .+..|-.|...--+.|+.-.|..+|++..-..+-|...|...+.
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir 761 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIR 761 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHH
Confidence 45567888889999999999999999877653 4 45688888888888999999999999987766778899999999
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 005512 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531 (693)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~ 531 (693)
.-.+.|+.+.|..+..++++ .++.+...|..-|.+..+.++-..+.+.+++.. .|+.+.-++...+.....++.|.
T Consensus 762 ~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 677788889999999999999888888888774 46666677778888889999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEE
Q 005512 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587 (693)
Q Consensus 532 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 587 (693)
..|+++++.+|++..+|..+-..+.+.|.-++-.++++..... .|..|-.|..+
T Consensus 838 ~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 838 EWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred HHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 9999999999999999999999999999999999999887764 34456667644
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.3e-11 Score=125.37 Aligned_cols=541 Identities=13% Similarity=0.079 Sum_probs=332.0
Q ss_pred HHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcH-HHHHHHHHHhccCCCCCHhHHHHHHHHHHcc
Q 005512 12 QQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL-KTLHAFTLRSRFYHHHDLFLVTNLVSQYASL 90 (693)
Q Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~ 90 (693)
++.+.-.|++++|.+++....... ..+...|-+|-..+-..|+. +.+...++...+ .|.|...|..+.....+.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd----p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD----PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC----ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhc
Confidence 334444599999999998876533 23555566666666677777 555555554444 267788999999999999
Q ss_pred CChHHHHHHhcccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccH----HHHHHHHhccCChHHHH
Q 005512 91 GSISHAFSLFSSVSDS--CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF----PFVLKACGYLRDIEFGV 164 (693)
Q Consensus 91 g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~----~~ll~~~~~~~~~~~a~ 164 (693)
|.+++|.-.|.+.-.. +|....---...|-+.|+...|++-|.++.+...+.|..-+ -.+++.+...++-+.|.
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999886433 24333334456788899999999999999886532222222 23345556666667888
Q ss_pred HHHHHHHHh-CCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC--------------------------CCcchHH---
Q 005512 165 KVHKDAVDS-GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--------------------------RNVVTWS--- 214 (693)
Q Consensus 165 ~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------------------------~~~~~~~--- 214 (693)
+.+...... +-..+...++.++.+|.+...++.|......+.. ++..+|+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 877777663 2234556788888899988888888776654432 1222222
Q ss_pred -HHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH-H-H---HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 005512 215 -SLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV-V-I---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288 (693)
Q Consensus 215 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t-~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 288 (693)
-++-++.+....+....+..-+.+..+.|+.. - + ..++...|.+..|..++..+.......+..+|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 12234444444444444444455555444322 2 2 6778888888888888888888766666778888888888
Q ss_pred HcCCchhHHHHHhcccCCC---hhhHHHHHHHHHHcCCchHHHHHHHHhHHC--------CcccCcchhhhHHHHhhccc
Q 005512 289 RCGRMDMARRFFEGILNKD---LVSWTSMIEAYAQADLPLEALEVYRQMILR--------RVLPDSVTFLGVIRACSSLA 357 (693)
Q Consensus 289 ~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~~t~~~ll~a~~~~~ 357 (693)
..|..+.|...|+.+..-+ ...--+|...+.+.|+.++|++.+..+... +..|+..........+.+.|
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 8888888888888875433 334445556778888888888888876521 22333333333444455566
Q ss_pred cHHHHHHHHHHHHHhc-----CCCc-----------------hhHHHHHHHHHHhhCCHHHHHHHHHh--------cCCC
Q 005512 358 SFQQARTVHGIIIHCF-----LGNQ-----------------LALDTAVVDLYVKCGSLMHARKVFDR--------MKQK 407 (693)
Q Consensus 358 ~~~~a~~i~~~~~~~~-----~~~~-----------------~~~~~~li~~y~k~g~~~~A~~~~~~--------~~~~ 407 (693)
+.++-..+-..++... +-|+ ......++.+-.+.++.....+-... ...-
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 6665444444444311 1010 00111122222222221111111100 0011
Q ss_pred CHhHH----HHHHHHHHhcCChHHHHHHHHHHHhc---cCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC
Q 005512 408 NVISW----STMISGYGMHGHGREALFLFDQMKAL---IKPDH---ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477 (693)
Q Consensus 408 ~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~---~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 477 (693)
.+.-| .-++..+++.++.++|+.+...+... ..++. ..-...+.++...+++..|...++.+...++...
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 22233 34567888999999999999988876 33332 1234456677889999999999999987544443
Q ss_pred C---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHhhcCCCCchhHHHH
Q 005512 478 R---PEHYACMVDMLGRAGKLNEAREFIERM-PIRPDAGVWGSLLGA--CRIHSNVELAEMAAKALFDLDAENPGRYVIL 551 (693)
Q Consensus 478 ~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 551 (693)
+ ...|++..+.+.+.|+-.-=..++... ...|+......++.+ ....+.+.-|+..+-++....|++|.+-.+|
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 3 345665556666665544444444443 223333222233322 4456788899999999999999999877777
Q ss_pred HHHHHh
Q 005512 552 SNIYAS 557 (693)
Q Consensus 552 ~~~~~~ 557 (693)
+-++.+
T Consensus 781 glafih 786 (895)
T KOG2076|consen 781 GLAFIH 786 (895)
T ss_pred HHHHHH
Confidence 666544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-11 Score=116.24 Aligned_cols=427 Identities=15% Similarity=0.116 Sum_probs=246.3
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc--CChHHH-HHHHHHHHHhCCCCChhhHHH
Q 005512 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL--RDIEFG-VKVHKDAVDSGYWSDVFVGNS 184 (693)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 184 (693)
.+++=|.|+. ...+|....+.-+|+.|...|+..+...-..+++.-+-. .++.-+ .+-|-.|.+.| +.+..+|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 3445666665 456788999999999999999877776666665543322 222222 22333343334 2233333
Q ss_pred HHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHH
Q 005512 185 LIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV 264 (693)
Q Consensus 185 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~ 264 (693)
|.|++.+ -+|+.. .+...++.+||.|.++--..+.|.++|++-.....+.+..+| +.......+..++++
T Consensus 191 ------K~G~vAd--L~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aF-N~lI~~~S~~~~K~L 260 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAF-NGLIGASSYSVGKKL 260 (625)
T ss_pred ------ccccHHH--HHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhh-hhhhhHHHhhccHHH
Confidence 4566544 445444 456689999999999999999999999999988888888877 222222334455888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcc
Q 005512 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344 (693)
Q Consensus 265 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 344 (693)
..+|+...+.||..++|+++....+.|+++.|++. |++++.+|++.|+.|...
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLs 313 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLS 313 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchh
Confidence 99999999999999999999999999988877654 344445555555555555
Q ss_pred hhhhHHHHhhccccHHH-HHHHHHHHHH----hcC----CCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--------C
Q 005512 345 TFLGVIRACSSLASFQQ-ARTVHGIIIH----CFL----GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--------K 407 (693)
Q Consensus 345 t~~~ll~a~~~~~~~~~-a~~i~~~~~~----~~~----~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--------~ 407 (693)
+|..+|.-+.+.++..+ +..+...+.. ..+ +.|...+.+.++.+.+..+.+-|..+-.-... +
T Consensus 314 Syh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~ 393 (625)
T KOG4422|consen 314 SYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGP 393 (625)
T ss_pred hHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcCh
Confidence 55555554444443322 2222222221 111 11223333344444444555545444333321 1
Q ss_pred ---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHH
Q 005512 408 ---NVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483 (693)
Q Consensus 408 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 483 (693)
...-|..+....++....+.-+..|+.|.-. .-|+..+...++++....|.++-..+++..++. +|..-+.....
T Consensus 394 ~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~e 472 (625)
T KOG4422|consen 394 DQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLRE 472 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHH
Confidence 1223445556666666666777777777666 666777777777777777777666666666654 45444333333
Q ss_pred HHHHHHhhcC---------CHHH-----HHHHHHh-------C-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 005512 484 CMVDMLGRAG---------KLNE-----AREFIER-------M-PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541 (693)
Q Consensus 484 ~li~~~~~~g---------~~~~-----A~~~~~~-------m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 541 (693)
-+...+++.. ++.. |..+++. + ..+-.....+..+-.+.+.|..++|.+++..+++..
T Consensus 473 eil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 473 EILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 3333333332 0000 1112211 1 111233344455555667788888888877775433
Q ss_pred ---CCCc--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 542 ---AENP--GRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 542 ---p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
|..+ .+..-|.+.-.......+|..+++.|...+.
T Consensus 553 ~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 553 NKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2222 1122344444556667777888877766554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-11 Score=118.24 Aligned_cols=401 Identities=12% Similarity=0.116 Sum_probs=306.2
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH--HHHH
Q 005512 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI--LNAM 252 (693)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--l~~~ 252 (693)
+...|-....-=...+++..|+.+|++... +++..|--.+..=.++.....|..++++.+..-+..|..-+ +..=
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 344444444444456778889999998765 67788888888889999999999999998876555555444 5555
Q ss_pred HhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcc--cCCChhhHHHHHHHHHHcCCchHHHHH
Q 005512 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI--LNKDLVSWTSMIEAYAQADLPLEALEV 330 (693)
Q Consensus 253 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (693)
-.+|++..|.+++....+. .|+...|++.|+.-.+...++.|+.++++. ..|++.+|--....-.++|....|..+
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 6789999999999998875 799999999999999999999999999985 679999999999989999999999999
Q ss_pred HHHhHHCCcccCcchhhhHHHHhh----ccccHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhCCHHHHHHH-----
Q 005512 331 YRQMILRRVLPDSVTFLGVIRACS----SLASFQQARTVHGIIIHCFLGN-QLALDTAVVDLYVKCGSLMHARKV----- 400 (693)
Q Consensus 331 ~~~m~~~g~~p~~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~----- 400 (693)
|....+. -.|...-..++.+++ +...++.|.-|+..+++.-... ...+|..++..--+-|+.....++
T Consensus 230 yerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 230 YERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 9887754 223333344444544 4567889999999998864222 245566666655566664443333
Q ss_pred ---HHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCh-------hHHHHHHHHH---HhcCCHHHHHH
Q 005512 401 ---FDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDH-------ITFVSVLSAC---SHAGLIDEGWE 464 (693)
Q Consensus 401 ---~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~-------~t~~~ll~~~---~~~g~~~~a~~ 464 (693)
++.+.. -|-.+|--.+..-...|+.+...++|++.+..++|-. ..|.-+=-+| ....+++.+++
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 222222 2566888788888888999999999999998877743 2233222233 35678999999
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHh----hcCCHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005512 465 CFNSMLRDFGVAPRPEHYACMVDMLG----RAGKLNEAREFIERM-PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
+++..++ -++....++..+--+|+ |+.++..|.+++... +.-|-.-++...|..-.+.++++....++++.++
T Consensus 388 vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 388 VYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999885 55556666666555554 788999999999776 7788999999999888899999999999999999
Q ss_pred cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeE
Q 005512 540 LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584 (693)
Q Consensus 540 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 584 (693)
..|.+..++.-.+..-...|+++.|+.+|+...++.....|..-|
T Consensus 466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 999999999999999999999999999999998876555555555
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-09 Score=108.87 Aligned_cols=415 Identities=14% Similarity=0.115 Sum_probs=329.0
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHH
Q 005512 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEG 229 (693)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 229 (693)
+.....+.+.|+.++..+++.- +.+... .-+|.+...++.|.++++...+ .+...|-+-...--.+|+.+..
T Consensus 385 aAVelE~~~darilL~rAvecc-p~s~dL----wlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECC-PQSMDL----WLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhc-cchHHH----HHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHH
Confidence 3444566677888888887753 233333 3455667778899999887765 4777887776666788998888
Q ss_pred HHHHHHH----HHCCCCCCHHHH---HHHHHhcCCchHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHHcCCchhHHHHH
Q 005512 230 LLLFKRM----MDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLD--QSLQNAAMVMYARCGRMDMARRFF 300 (693)
Q Consensus 230 ~~~~~~m----~~~g~~p~~~t~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f 300 (693)
.+++.+- ...|+..+...+ ..+|-..|.+-.+..+...++..|++.. -.+|+.-...+.+.+.++-|+.+|
T Consensus 460 ~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 460 EKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 8877664 456888888877 7788888999999999999999887654 357888888999999999999999
Q ss_pred hcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Q 005512 301 EGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377 (693)
Q Consensus 301 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~ 377 (693)
....+ .+...|...+..--..|..++-..+|++....- +-....+.......-..|+...|+.++..+.+.. +.+
T Consensus 540 a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pns 617 (913)
T KOG0495|consen 540 AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNS 617 (913)
T ss_pred HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCc
Confidence 87754 456678888777777899999999999998762 2233344444445556799999999999999876 347
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHh
Q 005512 378 LALDTAVVDLYVKCGSLMHARKVFDRMK--QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSH 455 (693)
Q Consensus 378 ~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~ 455 (693)
..++-+-+..-.....++.|+.+|.+.. .++...|.--+...--.++.++|++++++..+.++.-...|..+...+-+
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH
Confidence 7888888999999999999999999887 46777787767666778999999999999888554446778888889999
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 005512 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI-RP-DAGVWGSLLGACRIHSNVELAEMA 533 (693)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~ 533 (693)
.++++.|+..+..-.+ .++-.+..|-.|.+.-.+.|.+-.|+.++++... .| +...|-..|..-.+.|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887664 5556678899999999999999999999998832 24 788999999999999999999999
Q ss_pred HHHHhhcCCCC------------------------------chhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 534 AKALFDLDAEN------------------------------PGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 534 ~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
..++++-.|.+ +.+...++.++....+++.|++.|.+..+.+.
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 88887755543 44556778888888999999999999887653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.6e-15 Score=146.19 Aligned_cols=215 Identities=18% Similarity=0.201 Sum_probs=111.7
Q ss_pred ccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCChHHHHHHH
Q 005512 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK--QKNVISWSTMISGYGMHGHGREALFLF 432 (693)
Q Consensus 355 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 432 (693)
..++.+.|...+..+...+.. +...+..++.. ...+++++|..++...- .++...|..++..+.+.++++++..++
T Consensus 56 ~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHH
Confidence 344455555555555443321 34445555555 57788888888777653 356677788888888999999999999
Q ss_pred HHHHhc--cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CC
Q 005512 433 DQMKAL--IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP--IR 508 (693)
Q Consensus 433 ~~m~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~ 508 (693)
++.... .+++...|..+...+.+.|+.++|.+.++.+.+ -.+.+......++..+...|+.+++.++++... ..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 987755 456777888888899999999999999999986 233357788889999999999999888887661 23
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 509 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
.|...|..+..++...|+.++|+..++++.+..|+|+.+...+++++...|+.++|.+++.+..+
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46778899999999999999999999999999999999999999999999999999999887643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-11 Score=117.35 Aligned_cols=214 Identities=16% Similarity=0.125 Sum_probs=164.9
Q ss_pred cccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 005512 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLF 432 (693)
Q Consensus 356 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 432 (693)
.|+.-.+.+-++.+++....+ ...|--+..+|....+.++-...|++..+ .|..+|..-...+.-.+++++|..-|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 356666667777776654322 22255566678888888888888888763 35566666666667778899999999
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-
Q 005512 433 DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD- 510 (693)
Q Consensus 433 ~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~- 510 (693)
++.+..-+-+...|..+.-+..+.+.+++++..|+..++ .++..+++|+.....+...+++++|.+.|+.. .+.|+
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 998874444567788888888889999999999999987 67777889999999999999999999999876 34443
Q ss_pred --------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 511 --------AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 511 --------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
+.+-.+++-. .-.+++.+|+.+++++++++|....+|..|+.+-.+.|+.++|.++|++...
T Consensus 496 ~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222222222 2338999999999999999999999999999999999999999999998654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-09 Score=103.39 Aligned_cols=492 Identities=14% Similarity=0.141 Sum_probs=356.3
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHhcccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 005512 76 DLFLVTNLVSQYASLGSISHAFSLFSSVSD---SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLK 152 (693)
Q Consensus 76 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 152 (693)
+..+|-....-=-..+++..|+.+|++... + +...|---+..=.++.....|..++++....=.+.|.. |--.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHH
Confidence 444454444444456788999999998743 4 77888888888899999999999999988642222322 223333
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCC--CCCcchHHHHHHHHHhcCCchHHH
Q 005512 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP--ERNVVTWSSLTGAYAQNGCYEEGL 230 (693)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~ 230 (693)
.=-..|++..|+++|+.-.+ ..|+...|++.|++=.+...++.|+.++++.. .|++.+|--....=-++|+...|.
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 33467899999999998876 57999999999999999999999999999854 599999999888888999999999
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHH----hcCCchHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHHcCCchhHHHH-----
Q 005512 231 LLFKRMMDE-GIRPNRVVILNAMA----CVRKVSEADDVCRVVVDNGLDLD-QSLQNAAMVMYARCGRMDMARRF----- 299 (693)
Q Consensus 231 ~~~~~m~~~-g~~p~~~t~l~~~~----~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~----- 299 (693)
.+|....+. |-.-....++.+++ ..+.++.|.-++..++..-.... ...|..+...--+-|+...-.+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999988765 22111223333333 44667788888888887643322 34555555555556665443332
Q ss_pred ---HhcccCC---ChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCc-------chhhhHHHHh---hccccHHHHH
Q 005512 300 ---FEGILNK---DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS-------VTFLGVIRAC---SSLASFQQAR 363 (693)
Q Consensus 300 ---f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~~~~~~a~ 363 (693)
++.+... |-.+|--.+..--..|+.+...++|.+.+.. ++|-. ..|.-+=-+| ....+.+.++
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2333333 4557777777777889999999999999865 45522 1222221222 3467889999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHH----hhCCHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 364 TVHGIIIHCFLGNQLALDTAVVDLYV----KCGSLMHARKVFDRMK--QKNVISWSTMISGYGMHGHGREALFLFDQMKA 437 (693)
Q Consensus 364 ~i~~~~~~~~~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 437 (693)
+++...++ -++...+++.-+=-+|+ ++.++..|.+++.... .|-..++-..|..-.+.++++....++++..+
T Consensus 387 ~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 387 QVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999988 35556667666655554 6889999999999887 47777888888888899999999999999988
Q ss_pred ccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCChhhHHH
Q 005512 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPDAGVWGS 516 (693)
Q Consensus 438 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 516 (693)
.-+.|..++......-...|+.+.|+.+|..++....+..-...|.+.|+.-..+|.++.|..+++++ ...+...+|-+
T Consensus 466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWis 545 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWIS 545 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHh
Confidence 55557788888888888899999999999999875444455667888899889999999999999998 44566778888
Q ss_pred HHHHHH-----hcC-----------CHHHHHHHHHHHhhc----CCCC--chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 517 LLGACR-----IHS-----------NVELAEMAAKALFDL----DAEN--PGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 517 ll~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
+..--. +.+ +...|..+|+++... +|.. ....-...++-...|...+...+-++|.+
T Consensus 546 FA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 546 FAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 874432 334 567888888887653 3321 12233445555667777777777777654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-11 Score=119.13 Aligned_cols=440 Identities=11% Similarity=0.088 Sum_probs=266.3
Q ss_pred HHHHHHHHHccCChHHHHHHhcccCCC---CCcc-cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccH----HHHH
Q 005512 80 VTNLVSQYASLGSISHAFSLFSSVSDS---CDLF-LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF----PFVL 151 (693)
Q Consensus 80 ~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~----~~ll 151 (693)
...|..-|.-.....+|+..++-+... ||.- .--.+-..+.+...+.+|+.+|+..+..-...+..+- +.+-
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 333444555555555666555544221 2221 1122334455556666666665544432111122222 2222
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC----------------CCcchHHH
Q 005512 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE----------------RNVVTWSS 215 (693)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----------------~~~~~~~~ 215 (693)
-.+.+.|.++.|..-|++..+.. |+..+.-.|+-++..-|+-++..+.|.+|.. |+....|.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 23455666666666666665543 5555444445455555666666666655431 22222221
Q ss_pred H-----HHHHHhc--CCchHHHHHHHHHHHCCCCCCHH--------------------HH----HHHHHhcCCchHHHHH
Q 005512 216 L-----TGAYAQN--GCYEEGLLLFKRMMDEGIRPNRV--------------------VI----LNAMACVRKVSEADDV 264 (693)
Q Consensus 216 l-----i~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~--------------------t~----l~~~~~~~~~~~a~~~ 264 (693)
- +.-+-+. .+.++++-.-.+++..-+.|+-. .+ ...+.+.|+++.|.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 1 1111111 11223333323333222333321 01 3345677888889888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHc--CCchhHHHHHhcccCCCh---hhHHHHHHHHHHcCCchHHHHHHHHhHHCCc
Q 005512 265 CRVVVDNGLDLDQSLQNAAMVMYARC--GRMDMARRFFEGILNKDL---VSWTSMIEAYAQADLPLEALEVYRQMILRRV 339 (693)
Q Consensus 265 ~~~~~~~g~~~~~~~~~~li~~y~~~--g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 339 (693)
+....+..-.......|.|--.+.-. .++.+|...-+....-|. .....-...-..+|++++|.+.|++.+...-
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 88887765444444445554444443 356666666655543222 1111112223457899999999999887644
Q ss_pred ccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC---CCCHhHHHHHH
Q 005512 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTMI 416 (693)
Q Consensus 340 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li 416 (693)
......|+.-+ .+...|++++|...|-.+-.. +..+..+.-.+.+.|.-..+...|++++-... ..|+....-|.
T Consensus 522 sc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~ 599 (840)
T KOG2003|consen 522 SCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 33334444333 345678888888776544321 23456677778889999999999999988765 45788888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH-HHhhcCCH
Q 005512 417 SGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD-MLGRAGKL 495 (693)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~ 495 (693)
..|-+.|+-..|.+.+-.--+-++.|..|...|...|....-++++..+|++.. -+.|+..-|..||. ++.|.|++
T Consensus 600 dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccH
Confidence 999999999999988776655588899999999999999999999999999874 78999999988875 55679999
Q ss_pred HHHHHHHHhC--CCCCChhhHHHHHHHHHhcCC
Q 005512 496 NEAREFIERM--PIRPDAGVWGSLLGACRIHSN 526 (693)
Q Consensus 496 ~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~ 526 (693)
++|.++++.. .+..|......|+..|...|-
T Consensus 677 qka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 677 QKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999988 455578888888888777663
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-10 Score=122.27 Aligned_cols=325 Identities=13% Similarity=0.095 Sum_probs=191.9
Q ss_pred CCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcc---cCCChhhHHHHHHHHHHcCCchHHHHHHH
Q 005512 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI---LNKDLVSWTSMIEAYAQADLPLEALEVYR 332 (693)
Q Consensus 256 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 332 (693)
|++++|..++.++++.. +.....|..|...|-..|+.+++...+-.. ...|...|-.+..-..+.|.+++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555555555555443 233344555555555555555555444322 22344555555555555555555555555
Q ss_pred HhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHH----HHHHHHhhCCHHHHHHHHHhcCC--
Q 005512 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA----VVDLYVKCGSLMHARKVFDRMKQ-- 406 (693)
Q Consensus 333 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~----li~~y~k~g~~~~A~~~~~~~~~-- 406 (693)
+.++.. +++...+---...|-+.|+...|..-+..+.....+.|..-.-. .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 555442 22222222333344455555555555555554332222222222 23334444555666666555542
Q ss_pred ---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc----------------------------cCCChhHHHHHHHHHHh
Q 005512 407 ---KNVISWSTMISGYGMHGHGREALFLFDQMKAL----------------------------IKPDHITFVSVLSACSH 455 (693)
Q Consensus 407 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------------------------~~p~~~t~~~ll~~~~~ 455 (693)
-+...+|.++..|.....++.|......+... ..++... .-+.-+..+
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhc
Confidence 12335566666666666666666666665541 1112212 111112233
Q ss_pred cCCHHHHHHHHHHhHHhhC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHH
Q 005512 456 AGLIDEGWECFNSMLRDFG--VAPRPEHYACMVDMLGRAGKLNEAREFIERMP---IRPDAGVWGSLLGACRIHSNVELA 530 (693)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~ll~~~~~~g~~~~a 530 (693)
....+....+.....+ .. ..-+...|.-+.++|.+.|++.+|+++|..+- ...+..+|--+...+...|..++|
T Consensus 390 L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 3333333333333333 25 33457789999999999999999999999882 223577999999999999999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeE
Q 005512 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584 (693)
Q Consensus 531 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 584 (693)
++.|++++.+.|++..+-..|+.+|.+.|+.++|.+.++.+..-+....+++.|
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999987544333344444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-11 Score=124.65 Aligned_cols=226 Identities=12% Similarity=0.017 Sum_probs=143.9
Q ss_pred HHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccH
Q 005512 283 AMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359 (693)
Q Consensus 283 li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 359 (693)
....+...|+++.|...++++.+ .++.....+...|.+.|++++|++++..+.+.+..++. .+..+-
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~--------- 228 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE--------- 228 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH---------
Confidence 35677777777777777777643 24556677777788888888888888887776543211 111000
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005512 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMK 436 (693)
Q Consensus 360 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 436 (693)
...+..++....+..+.+...++++.++ ..++.....+..++...|+.++|.+++++..
T Consensus 229 ------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 229 ------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGL 290 (398)
T ss_pred ------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0011112222223334455555555554 2466667777777777888888887777776
Q ss_pred hccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCChhhHH
Q 005512 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPDAGVWG 515 (693)
Q Consensus 437 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 515 (693)
+ .+||... .++.+....++.+++.+..+...+ ..+-|...+.++...+.+.|++++|.+.|+.. ...|+...+.
T Consensus 291 ~-~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~ 365 (398)
T PRK10747 291 K-RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA 365 (398)
T ss_pred h-cCCCHHH--HHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 6 4444422 123333345777777777777765 44445566777778888888888888888776 5567777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcC
Q 005512 516 SLLGACRIHSNVELAEMAAKALFDLD 541 (693)
Q Consensus 516 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 541 (693)
.+...+...|+.++|.+.+++.+.+-
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 77788888888888888888776643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.3e-10 Score=116.28 Aligned_cols=189 Identities=13% Similarity=0.052 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhcCCCCH------hHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCCC-hhHHHHH
Q 005512 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNV------ISWSTMISGYGMHGHGREALFLFDQMKAL--IKPD-HITFVSV 449 (693)
Q Consensus 379 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~-~~t~~~l 449 (693)
..|..||+......++++|..+.++...+|. .-+..+.+.+.+.+....+..+++++.+. ..|+ ..++--+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 5788999999999999999999999987654 45778888899999999999999999887 4554 4667778
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCChhhHHHHHHHH------
Q 005512 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM--PIRPDAGVWGSLLGAC------ 521 (693)
Q Consensus 450 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~------ 521 (693)
++.-...|..+.-.++++-+.. .|+..+ .-++....+.++...|.+.++.. ..+|.+..-..+...+
T Consensus 572 lns~a~agqqe~Lkkl~d~lvs-lgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td 646 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVS-LGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTD 646 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHH-hhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccc
Confidence 8888889999988888887765 466542 34555666777877777776654 2333333333333322
Q ss_pred ---------------HhcCCHHHHHHHHHHH-hhc-CCC--------------------CchhHHHHHHHHHhcCChHHH
Q 005512 522 ---------------RIHSNVELAEMAAKAL-FDL-DAE--------------------NPGRYVILSNIYASSGKRIEA 564 (693)
Q Consensus 522 ---------------~~~g~~~~a~~~~~~~-~~~-~p~--------------------~~~~~~~l~~~~~~~g~~~~a 564 (693)
.+.|+..+|..+.+-- ... .|. +.+....|+..|.+.|+|+.|
T Consensus 647 ~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA 726 (1088)
T KOG4318|consen 647 SPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERA 726 (1088)
T ss_pred cHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHH
Confidence 2223322222222110 000 000 112344688899999999999
Q ss_pred HHHHHHHH
Q 005512 565 NRIRALMK 572 (693)
Q Consensus 565 ~~~~~~m~ 572 (693)
..++.++.
T Consensus 727 ~glwnK~Q 734 (1088)
T KOG4318|consen 727 SGLWNKDQ 734 (1088)
T ss_pred HhHHhhCc
Confidence 99999886
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-10 Score=109.35 Aligned_cols=358 Identities=13% Similarity=0.077 Sum_probs=201.7
Q ss_pred CCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH---HH--
Q 005512 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VI-- 248 (693)
Q Consensus 174 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~-- 248 (693)
+...|.+.+-...-.+-+.|..+.|...|......-...|.+-+....-.-+.+. ...... |...|.. ++
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~----~~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEI----LSILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHH----HHHHHh-cCcccchHHHHHHH
Confidence 3455665555555566778888889988887765444444443332211122222 222211 1111111 11
Q ss_pred HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHH
Q 005512 249 LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328 (693)
Q Consensus 249 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (693)
..++......+++.+-.......|++.+...-+-...++-...++|.|..+|+++.+.|+.-.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl----------------- 296 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL----------------- 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc-----------------
Confidence 556666667777777777777778777776666666666666777777777777755433210
Q ss_pred HHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--
Q 005512 329 EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ-- 406 (693)
Q Consensus 329 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-- 406 (693)
-|..+|+.++-.-.....+. .+..-+-.--+--+.++..+.+-|+-.++.++|...|++..+
T Consensus 297 ------------~dmdlySN~LYv~~~~skLs----~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN 360 (559)
T KOG1155|consen 297 ------------DDMDLYSNVLYVKNDKSKLS----YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN 360 (559)
T ss_pred ------------hhHHHHhHHHHHHhhhHHHH----HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC
Confidence 02223333222111100000 000000000011223334455556666666777777766653
Q ss_pred -CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 005512 407 -KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485 (693)
Q Consensus 407 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 485 (693)
.....|+.|..-|....+...|++-++...+..+-|-..|..|..+|.-.+...-|+-+|+++.+ --+-|...|.+|
T Consensus 361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aL 438 (559)
T KOG1155|consen 361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVAL 438 (559)
T ss_pred cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHH
Confidence 23456777777777777777777777777664445667777777777777777777777776653 233356677777
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-------cCCCCchhHHHHHHHHH
Q 005512 486 VDMLGRAGKLNEAREFIERMP--IRPDAGVWGSLLGACRIHSNVELAEMAAKALFD-------LDAENPGRYVILSNIYA 556 (693)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~ 556 (693)
.+.|.+.+++++|++.|.+.- -..+...+..|...+.+.++.++|...+++-++ .+|....+..-|+.-+-
T Consensus 439 G~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~ 518 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFK 518 (559)
T ss_pred HHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 777777777777777776651 122345666677777777777777777776655 22322233344666677
Q ss_pred hcCChHHHHHHHHHH
Q 005512 557 SSGKRIEANRIRALM 571 (693)
Q Consensus 557 ~~g~~~~a~~~~~~m 571 (693)
+.+++++|.......
T Consensus 519 k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 519 KMKDFDEASYYATLV 533 (559)
T ss_pred hhcchHHHHHHHHHH
Confidence 778887777665544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-11 Score=124.72 Aligned_cols=288 Identities=11% Similarity=0.021 Sum_probs=166.2
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHH--HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHH
Q 005512 223 NGCYEEGLLLFKRMMDEGIRPNRVVI--LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300 (693)
Q Consensus 223 ~g~~~~A~~~~~~m~~~g~~p~~~t~--l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 300 (693)
.|+++.|.+.+.+..+....|....+ ..+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|...+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45666666666555444322222222 3334444555555555555544332222233444566777777777777777
Q ss_pred hcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Q 005512 301 EGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377 (693)
Q Consensus 301 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~ 377 (693)
+.+.+ .+...+..+...+.+.|++++|.+++..+.+.++.+. ..+..+-.
T Consensus 177 ~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~-------------------------- 229 (409)
T TIGR00540 177 DKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ-------------------------- 229 (409)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH--------------------------
Confidence 77643 2445666777777777777777777777777653221 11110000
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhH---HHHHHH
Q 005512 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHIT---FVSVLS 451 (693)
Q Consensus 378 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t---~~~ll~ 451 (693)
..+..+++.-......+...+.++..++ .++..+..+...+...|+.++|.+++++..+. .||... ......
T Consensus 230 -~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~-~pd~~~~~~~~l~~~ 307 (409)
T TIGR00540 230 -KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK-LGDDRAISLPLCLPI 307 (409)
T ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-CCCcccchhHHHHHh
Confidence 0000111111111223344444444442 36777777778888888888888888887774 333321 111112
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCChhhHHHHHHHHHhcCCHH
Q 005512 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER--M-PIRPDAGVWGSLLGACRIHSNVE 528 (693)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~ 528 (693)
.....++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...||...+..+...+.+.|+.+
T Consensus 308 ~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 308 PRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKA 387 (409)
T ss_pred hhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHH
Confidence 22334677777888777765322222225566788888888888888888883 2 55688877778888888888888
Q ss_pred HHHHHHHHHhh
Q 005512 529 LAEMAAKALFD 539 (693)
Q Consensus 529 ~a~~~~~~~~~ 539 (693)
+|.+++++.+.
T Consensus 388 ~A~~~~~~~l~ 398 (409)
T TIGR00540 388 EAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHH
Confidence 88888888754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.3e-10 Score=117.28 Aligned_cols=354 Identities=10% Similarity=0.016 Sum_probs=205.0
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005512 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287 (693)
Q Consensus 208 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 287 (693)
++..++.+++..-..+|+.+.|..++.+|.+.|+..+...|-..++..++....+.+..-+...|+.|+..++..-+-..
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~ 281 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLGINAAQVFEFVLRGMQEKGVQPGSETQADYVIPQ 281 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhcCccchHHHHHHHHHHHhcCCCCcchhHHHHHhh
Confidence 78889999999999999999999999999999999888888555556899999999999999999999999988777777
Q ss_pred HHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCch-----HHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHH
Q 005512 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL-----EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362 (693)
Q Consensus 288 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~-----~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 362 (693)
.+.|....+....+.-..-....+..+..+...+.+.+ -....+++..-.|+.-....|. +..-....|.-+..
T Consensus 282 l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~v 360 (1088)
T KOG4318|consen 282 LSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEV 360 (1088)
T ss_pred hcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchH
Confidence 77655332222111100011122333333311111111 1222222222233332222222 11112224555555
Q ss_pred HHHHHHHHHhcC---CCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHh---cC------------C
Q 005512 363 RTVHGIIIHCFL---GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM---HG------------H 424 (693)
Q Consensus 363 ~~i~~~~~~~~~---~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g------------~ 424 (693)
.++-+.+...-. ..++..+..+ +...|.+...+....-.-.-.+... .. +
T Consensus 361 eqlvg~l~npt~r~s~~~V~a~~~~------------lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lr 428 (1088)
T KOG4318|consen 361 EQLVGQLLNPTLRDSGQNVDAFGAL------------LRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLR 428 (1088)
T ss_pred HHHHhhhcCCccccCcchHHHHHHH------------HHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhC
Confidence 555554432111 1112222222 3344444443322111111111111 11 1
Q ss_pred hHHHHHHHHHHHh-----ccCC-------ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 005512 425 GREALFLFDQMKA-----LIKP-------DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492 (693)
Q Consensus 425 ~~~A~~~~~~m~~-----~~~p-------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 492 (693)
...+++-+..... ...| =...-+.++..|...-+..+++..-+.... +-+. ..|..||+.+...
T Consensus 429 kns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~-~lf~---g~ya~Li~l~~~h 504 (1088)
T KOG4318|consen 429 KNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYED-LLFA---GLYALLIKLMDLH 504 (1088)
T ss_pred cchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh---hHHHHHhhhHHHH
Confidence 1112221111110 0111 112234455566666666666655444332 1222 6789999999999
Q ss_pred CCHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCCCchhHHHHHHHHHhcCChHHH
Q 005512 493 GKLNEAREFIERMP-----IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL---DAENPGRYVILSNIYASSGKRIEA 564 (693)
Q Consensus 493 g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a 564 (693)
.+.++|..+.++.. ..-|..-+..+.+...+++....+..+.+++.+. .|.-..+..-+.+.-+..|+.+.-
T Consensus 505 dkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~L 584 (1088)
T KOG4318|consen 505 DKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKL 584 (1088)
T ss_pred HHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHH
Confidence 99999999999883 2345566778888888999998888888877653 233345566777888889999999
Q ss_pred HHHHHHHHhCCCcc
Q 005512 565 NRIRALMKRRGVKK 578 (693)
Q Consensus 565 ~~~~~~m~~~~~~~ 578 (693)
.++++-+...|+.-
T Consensus 585 kkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 585 KKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999888765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8e-11 Score=122.45 Aligned_cols=275 Identities=11% Similarity=0.042 Sum_probs=199.2
Q ss_pred cCCchhHHHHHhcccCC--Chh-hHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhh--hHHHHhhccccHHHHHH
Q 005512 290 CGRMDMARRFFEGILNK--DLV-SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL--GVIRACSSLASFQQART 364 (693)
Q Consensus 290 ~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 364 (693)
.|+++.|.+.+....+. ++. .+-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 47777777777765443 122 2322233446778888888888888654 44543332 22445667788888888
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCC---H--------hHHHHHHHHHHhcCChHHHHHHHH
Q 005512 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN---V--------ISWSTMISGYGMHGHGREALFLFD 433 (693)
Q Consensus 365 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~~~~ 433 (693)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+.. . ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887765 5567778888899999999999998888887421 1 133334444444555666667777
Q ss_pred HHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-h
Q 005512 434 QMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD-A 511 (693)
Q Consensus 434 ~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~ 511 (693)
..-...+.+......+..++...|+.++|.++++...+ ..|+.... ++.+....|+.+++++..++. ...|+ .
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 66544666788889999999999999999999998875 24454322 233334569999999999887 44565 4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 512 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
....++...|...+++++|.+.|+++++.+|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556777788999999999999999999999976 5678999999999999999999997654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=129.79 Aligned_cols=251 Identities=14% Similarity=0.161 Sum_probs=90.0
Q ss_pred HHHHHHHcCCchhHHHHHhcc-c----CCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccc
Q 005512 283 AMVMYARCGRMDMARRFFEGI-L----NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357 (693)
Q Consensus 283 li~~y~~~g~~~~A~~~f~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 357 (693)
+..++.+.|++++|.+++++. . ..|...|..+.......++.++|.+.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 355555666666666666332 1 123444544555555556666666666666554322 33334444444 4556
Q ss_pred cHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC-----CCCHhHHHHHHHHHHhcCChHHHHHHH
Q 005512 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-----QKNVISWSTMISGYGMHGHGREALFLF 432 (693)
Q Consensus 358 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~ 432 (693)
++++|..+.....+.. ++...+..++..|.+.|+++++.++++.+. ..+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666655444332 344455566667777777777777777643 245667777777777788888888888
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 005512 433 DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-D 510 (693)
Q Consensus 433 ~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 510 (693)
++..+..+.|......++..+...|+.+++.+++....+. .+.++..+..+..+|...|+.++|+..|++. ...| |
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 8777733334666777777777778887777777777653 2455666777777888888888888888776 2234 5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005512 511 AGVWGSLLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 511 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
+.+...+..++...|+.++|..+.+++.+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 56666666777788888888877777654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-11 Score=123.49 Aligned_cols=160 Identities=17% Similarity=0.188 Sum_probs=82.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHH--
Q 005512 408 NVISWSTMISGYGMHGHGREALFLFDQMKALIKP-DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC-- 484 (693)
Q Consensus 408 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-- 484 (693)
.+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+.++. .++.+|++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rhYnAwY 493 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ-LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRHYNAWY 493 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc-cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchhhHHHH
Confidence 344555555555555555555555555554 333 345555555555555555555555554432 33334333
Q ss_pred -HHHHHhhcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCh
Q 005512 485 -MVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561 (693)
Q Consensus 485 -li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 561 (693)
|.-.|.|.++++.|+-.|++. .+.|. .+....+...+.+.|+.|+|+++++++..++|.|+..-..-+.++...+++
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 234455555555555555554 34442 333333334455555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHh
Q 005512 562 IEANRIRALMKR 573 (693)
Q Consensus 562 ~~a~~~~~~m~~ 573 (693)
++|.+.++++++
T Consensus 574 ~eal~~LEeLk~ 585 (638)
T KOG1126|consen 574 VEALQELEELKE 585 (638)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.3e-10 Score=115.58 Aligned_cols=277 Identities=11% Similarity=0.026 Sum_probs=169.3
Q ss_pred cCCchhHHHHHhcccCC--C-hhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcc--hhhhHHHHhhccccHHHHHH
Q 005512 290 CGRMDMARRFFEGILNK--D-LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV--TFLGVIRACSSLASFQQART 364 (693)
Q Consensus 290 ~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~ 364 (693)
.|+++.|.+.+.+..+. + ...+-.......+.|++++|.+.+.+..+. .|+.. ............|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 35555555555444321 1 112222234444555566666655555433 23322 11122344445556666666
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHH----HHHHHHHhcCChHHHHHHHHHHHh
Q 005512 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWS----TMISGYGMHGHGREALFLFDQMKA 437 (693)
Q Consensus 365 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~ 437 (693)
.++.+.+.. +.+..+...+...|.+.|++++|.+.+....+ .+...+. ....++...+..+++.+.+..+..
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666555544 33445566666777777777777777766653 2222221 111122233333444445555554
Q ss_pred c----cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhH-HHHHHHH--HhhcCCHHHHHHHHHhC-CCCC
Q 005512 438 L----IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH-YACMVDM--LGRAGKLNEAREFIERM-PIRP 509 (693)
Q Consensus 438 ~----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~--~~~~g~~~~A~~~~~~m-~~~p 509 (693)
. .+.+...+..+...+...|+.++|.++++...+. .|+... .-.++.. ....++.+++.+.+++. ...|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 3 2347788889999999999999999999999863 233321 0012232 23457888888888776 3445
Q ss_pred Ch---hhHHHHHHHHHhcCCHHHHHHHHH--HHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 510 DA---GVWGSLLGACRIHSNVELAEMAAK--ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 510 ~~---~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
+. ....++...+.+.|++++|.+.++ ...+..|++ ..+..|+.++.+.|+.++|.+++++...
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 456688889999999999999999 577777765 4577999999999999999999998644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-10 Score=110.45 Aligned_cols=315 Identities=14% Similarity=0.068 Sum_probs=212.7
Q ss_pred HHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHH-HHHHHHHHcCCchHHH
Q 005512 250 NAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT-SMIEAYAQADLPLEAL 328 (693)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~A~ 328 (693)
......|....|...+...+..- +..|.+-+....-..+.+.+..+-...+..+...-. -+..++-...+.++++
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~ 247 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEAL 247 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666555321 222333333322333444444443333332221111 1234455555677777
Q ss_pred HHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhCCHH---HHHHHHHh
Q 005512 329 EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL--GNQLALDTAVVDLYVKCGSLM---HARKVFDR 403 (693)
Q Consensus 329 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~y~k~g~~~---~A~~~~~~ 403 (693)
+-.......|+.-+...-+....+.....++++|..+|+.+.+... -.|..+|+.++ |.+..+-. -|..+++
T Consensus 248 ~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~~v~~- 324 (559)
T KOG1155|consen 248 QKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQNVSN- 324 (559)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHHHHHH-
Confidence 7777776666544444333344444556678888888888777531 12445555444 33332211 1222221
Q ss_pred cCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHH
Q 005512 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483 (693)
Q Consensus 404 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 483 (693)
+.+--+.|...+.+-|+-.++.++|...|++..+.-+--...|+.+..-|....+...|.+-++.+++ -.+.|-..|-
T Consensus 325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWY 402 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWY 402 (559)
T ss_pred hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHh
Confidence 11222344555667788888999999999999883333456788888999999999999999999985 4445778899
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCh
Q 005512 484 CMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561 (693)
Q Consensus 484 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 561 (693)
.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|+..|++++..+-.+..++..|+++|-+.++.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 9999999999999999999998 5667 7899999999999999999999999999998877778999999999999999
Q ss_pred HHHHHHHHHHHh
Q 005512 562 IEANRIRALMKR 573 (693)
Q Consensus 562 ~~a~~~~~~m~~ 573 (693)
++|.+.+++-.+
T Consensus 483 ~eAa~~yek~v~ 494 (559)
T KOG1155|consen 483 NEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999998766
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.3e-11 Score=119.86 Aligned_cols=277 Identities=11% Similarity=-0.013 Sum_probs=212.8
Q ss_pred CchhHHHHHhcccC--CChh-hHHHHHHHHHHcCCchHHHHHHHHhHHCCc--ccCcchhhhHHHHhhccccHHHHHHHH
Q 005512 292 RMDMARRFFEGILN--KDLV-SWTSMIEAYAQADLPLEALEVYRQMILRRV--LPDSVTFLGVIRACSSLASFQQARTVH 366 (693)
Q Consensus 292 ~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~a~~i~ 366 (693)
+..+|...|..++. .|+- ....+..+|...+++++|.++|+..++... .-+...|+++|--.-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45788888888654 2333 335567889999999999999999886521 11556777777543221 111122
Q ss_pred H-HHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 005512 367 G-IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK---NVISWSTMISGYGMHGHGREALFLFDQMKALIKPD 442 (693)
Q Consensus 367 ~-~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 442 (693)
. .+++ --+..+.+|-++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+......+-+
T Consensus 410 aq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 410 AQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 2 2222 23566889999999999999999999999999853 55788888888888999999999999987633334
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHH
Q 005512 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLG 519 (693)
Q Consensus 443 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 519 (693)
...|..+...|.+.++++.|.-.|+.+. .+.| +.....++...+.+.|+.++|++++++. ...| |+..----+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 4667888899999999999999999987 5566 4556677888999999999999999998 3344 4444334445
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 520 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
.+...++.++|+..++++.++-|++..+|..++.+|-+.|+.+.|..-|.-+.+.+.
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 566779999999999999999999999999999999999999999998888776543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-08 Score=102.12 Aligned_cols=262 Identities=13% Similarity=0.046 Sum_probs=207.3
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 005512 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386 (693)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 386 (693)
++.....-..-+...+++.+.++++....+.. ++....+..-|.++...|+..+-..+-..+++. .|....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 33444445566778899999999999988763 445555555566677777766555554555553 4666778888888
Q ss_pred HHHhhCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHH
Q 005512 387 LYVKCGSLMHARKVFDRMKQKN---VISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGW 463 (693)
Q Consensus 387 ~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 463 (693)
-|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+.++-....+.-+.--|.+.++.+.|.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 8888999999999999887433 4689999999999999999999999887765555555666666788899999999
Q ss_pred HHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 005512 464 ECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERMP--------IRP-DAGVWGSLLGACRIHSNVELAEMA 533 (693)
Q Consensus 464 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 533 (693)
++|.++. ++.| |+.+.+-+.-.....+.+.+|..+|+..- .++ =..+|+.|.-+|++.+.+++|+..
T Consensus 401 ~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 401 KFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 9999886 5555 56677777777778899999999998761 111 234577777899999999999999
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 534 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
+++++.+.|.++.+|.+++-+|...|+++.|...|.+...
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-07 Score=93.87 Aligned_cols=490 Identities=10% Similarity=0.086 Sum_probs=301.2
Q ss_pred CCHhHHHHHHHHHHccCChHHHHHHhccc----CCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 005512 75 HDLFLVTNLVSQYASLGSISHAFSLFSSV----SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFV 150 (693)
Q Consensus 75 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 150 (693)
.-+.+|-..+....+.|++..-+..|++. |..-....|...+.-..+.+-++-++.+|++.++. ++..-.-.
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eey 175 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEY 175 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHH
Confidence 34567777888888999999999999975 32225567999999999999999999999999874 33336667
Q ss_pred HHHHhccCChHHHHHHHHHHHHh------CCCCChhhHHHHHHHHHhCCCHH---HHHHHhccCCC--CC--cchHHHHH
Q 005512 151 LKACGYLRDIEFGVKVHKDAVDS------GYWSDVFVGNSLIAMYGKCGRVD---VCRQLFDEMPE--RN--VVTWSSLT 217 (693)
Q Consensus 151 l~~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~---~A~~~f~~m~~--~~--~~~~~~li 217 (693)
|..++..+++++|.+.+...+.. ..+.+-..|+-+-+..++.-+.- ....+++.+.. +| ...|++|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 77888999999999998887643 12456667777777776654332 23445555544 23 34799999
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHh----------------cCC------chHHHHHHHHHHHhCC-
Q 005512 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI-LNAMAC----------------VRK------VSEADDVCRVVVDNGL- 273 (693)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-l~~~~~----------------~~~------~~~a~~~~~~~~~~g~- 273 (693)
+-|.+.|.+++|..+|++....-.....+|- ..+++. .++ ++....-++.+...+.
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 9999999999999999988776544444332 111111 111 1111222233322221
Q ss_pred ----------CCchhHHHHHHHHHHHcCCchhHHHHHhcccC---------CChhhHHHHHHHHHHcCCchHHHHHHHHh
Q 005512 274 ----------DLDQSLQNAAMVMYARCGRMDMARRFFEGILN---------KDLVSWTSMIEAYAQADLPLEALEVYRQM 334 (693)
Q Consensus 274 ----------~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m 334 (693)
+.++..|..-+.. ..|+..+-...|.+... +-...|..+...|-.+|+.+.|..+|.+.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 1111122222211 12444444444444311 11235778888888888888888888877
Q ss_pred HHCCcccCcchhhhHHHHh----hccccHHHHHHHHHHHHHh-----------cCCC------chhHHHHHHHHHHhhCC
Q 005512 335 ILRRVLPDSVTFLGVIRAC----SSLASFQQARTVHGIIIHC-----------FLGN------QLALDTAVVDLYVKCGS 393 (693)
Q Consensus 335 ~~~g~~p~~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~-----------~~~~------~~~~~~~li~~y~k~g~ 393 (693)
.+...+ ...-+..+--.| .+..+++.|..+.+.+... +.++ +..+|.-.++.--.+|-
T Consensus 414 ~~V~y~-~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 414 TKVPYK-TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hcCCcc-chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 654321 111111121222 2344566666666554321 1122 23445555666677888
Q ss_pred HHHHHHHHHhcCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHhc-cCCCh-hHHHHHHHHH---HhcCCHHHHHHH
Q 005512 394 LMHARKVFDRMKQKNVISWSTM---ISGYGMHGHGREALFLFDQMKAL-IKPDH-ITFVSVLSAC---SHAGLIDEGWEC 465 (693)
Q Consensus 394 ~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~-~~p~~-~t~~~ll~~~---~~~g~~~~a~~~ 465 (693)
++....+++++.+--+.|=..+ ..-+-.+.-++++.++|++-+.. -.|+. ..|+..+.-+ .....++.|+.+
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 8888899988874222111111 12234567789999999998887 44554 3344444433 234578999999
Q ss_pred HHHhHHhhCCCCChhH--HHHHHHHHhhcCCHHHHHHHHHhCC--CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005512 466 FNSMLRDFGVAPRPEH--YACMVDMLGRAGKLNEAREFIERMP--IRPD--AGVWGSLLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 466 ~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
|++.++ |.+|...- |-.....=.+-|....|++++++.. .++. ...||..|.--...=-+.....+|+++++
T Consensus 573 FEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 573 FEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 999997 77764321 2222233335688889999999983 3332 45677777443332224456678999998
Q ss_pred cCCCCch--hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 540 LDAENPG--RYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 540 ~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
.-|++-. ...-.+++-++.|..+.|+.++..-.+
T Consensus 651 ~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 651 SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 8776432 344568888999999999999987655
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.5e-10 Score=107.30 Aligned_cols=198 Identities=13% Similarity=0.107 Sum_probs=164.9
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 005512 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSAC 453 (693)
Q Consensus 377 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~ 453 (693)
....+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|.+.+++..+..+.+...+..+...+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 345667788889999999999999988763 35678888889999999999999999999875455667788888899
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 005512 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAE 531 (693)
Q Consensus 454 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 531 (693)
...|++++|.+.++.+.+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999863222334556777889999999999999999887 3334 4567888888899999999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 532 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
..++++.+..|+++..+..++.++...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998888888888999999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-08 Score=99.48 Aligned_cols=437 Identities=12% Similarity=0.102 Sum_probs=252.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHH--HHHHH--Hh
Q 005512 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS--LIAMY--GK 191 (693)
Q Consensus 116 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~--~~ 191 (693)
++-+.++|++++|...-.+++..+ +-|...+..-+-+..+.+.+++|..+.+. .+. ..+++. +=.+| .+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHH
Confidence 344566777888888888777654 33445566666677777778777744332 111 111122 23333 47
Q ss_pred CCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 005512 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDN 271 (693)
Q Consensus 192 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~ 271 (693)
.+..|+|...++.....+..+...-...+.+.|++++|+.+|+.+.+.+...-..-.-..|...+....+. + +...
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~---~q~v 167 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-L---LQSV 167 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-H---HHhc
Confidence 78889998888865555555666666778888999999999999887754332222211111111111111 1 1111
Q ss_pred CCCC--chhHHHHHHHHHHHcCCchhHHHHHhcc--------cCCC-----hh-----hHHHHHHHHHHcCCchHHHHHH
Q 005512 272 GLDL--DQSLQNAAMVMYARCGRMDMARRFFEGI--------LNKD-----LV-----SWTSMIEAYAQADLPLEALEVY 331 (693)
Q Consensus 272 g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~--------~~~~-----~~-----~~~~li~~~~~~g~~~~A~~~~ 331 (693)
...| +-..+-.....+...|++.+|+++++.. .+.| +. .---|.-.+...|+.++|.+++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 1111 1112222345667789999999888776 2211 11 1122344567789999999999
Q ss_pred HHhHHCCcccCcchhhhHH---HHhhccccHHH--HHHHHHH-----------HHHhcCCCchhHHHHHHHHHHhhCCHH
Q 005512 332 RQMILRRVLPDSVTFLGVI---RACSSLASFQQ--ARTVHGI-----------IIHCFLGNQLALDTAVVDLYVKCGSLM 395 (693)
Q Consensus 332 ~~m~~~g~~p~~~t~~~ll---~a~~~~~~~~~--a~~i~~~-----------~~~~~~~~~~~~~~~li~~y~k~g~~~ 395 (693)
...+... .+|........ .+...-..+-. ....++. .....-......-+.++.+|. +..+
T Consensus 248 ~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~ 324 (652)
T KOG2376|consen 248 VDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMD 324 (652)
T ss_pred HHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHH
Confidence 9988775 34442222221 12222111111 0111100 000111112233355666665 5567
Q ss_pred HHHHHHHhcCCCC-HhHHHHHHHHHH--hcCChHHHHHHHHHHHhccCCC-hhHHHHHHHHHHhcCCHHHHHHHHH----
Q 005512 396 HARKVFDRMKQKN-VISWSTMISGYG--MHGHGREALFLFDQMKALIKPD-HITFVSVLSACSHAGLIDEGWECFN---- 467 (693)
Q Consensus 396 ~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~---- 467 (693)
.+.++-...+... ...+.+++.... +.....+|.+++...-+..+-+ .+....++......|+++.|.+++.
T Consensus 325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 7777777776432 334444443332 2234777888877776643333 3455566667788999999999988
Q ss_pred ----HhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 005512 468 ----SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM--------PIRPD-AGVWGSLLGACRIHSNVELAEMAA 534 (693)
Q Consensus 468 ----~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 534 (693)
.+.+ +.-.+.+...++.+|.+.++-+.|..++.+. .-.+. ..+|.-+...-.++|+-++|..++
T Consensus 405 ~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 405 SWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 4443 2334455677889999988877777766554 11221 223333334445779999999999
Q ss_pred HHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 005512 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570 (693)
Q Consensus 535 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 570 (693)
+++.+.+|++..+...++.+|++. +.+.|..+-+.
T Consensus 482 eel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 482 EELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 999999999999999999999875 45566555444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8e-09 Score=99.73 Aligned_cols=275 Identities=13% Similarity=0.119 Sum_probs=151.4
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHH--HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHH
Q 005512 223 NGCYEEGLLLFKRMMDEGIRPNRVVI--LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300 (693)
Q Consensus 223 ~g~~~~A~~~~~~m~~~g~~p~~~t~--l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 300 (693)
.|++.+|.++..+-.+.+-.|-...+ ..+....|+.+.+...+.++.+.--+++..+.-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 46777777777776666655554433 5566667777777777777777644666777778888888889999888877
Q ss_pred hcc---cCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCc-------chhhhHHHHhhccccHHHHHHHHHHHH
Q 005512 301 EGI---LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS-------VTFLGVIRACSSLASFQQARTVHGIII 370 (693)
Q Consensus 301 ~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~~~~~~a~~i~~~~~ 370 (693)
+++ ..+++.........|.+.|++.+.+.++.+|.+.|.--|+ .++..++.-+...+..+.-+..++..-
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 765 3457778888889999999999999999999988765443 234444443333333333333333322
Q ss_pred HhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHH
Q 005512 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK--NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVS 448 (693)
Q Consensus 371 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ 448 (693)
+ ....++.+-.+++.-+..||+.++|.++..+..++ |.. -...-.+.+-++.+.-++..++-....+.++-.+.+
T Consensus 257 r-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~t 333 (400)
T COG3071 257 R-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLST 333 (400)
T ss_pred H-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHH
Confidence 2 12333444445555555555555555554444321 111 011112223333333333333333322333344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 005512 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503 (693)
Q Consensus 449 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 503 (693)
+...|.+.+.|.+|...|+... ...|+..+|+.+.+.|.+.|+.++|.+.++
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 4444444444444444444333 233444444444444444444444444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.7e-12 Score=86.95 Aligned_cols=50 Identities=22% Similarity=0.577 Sum_probs=47.5
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 005512 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156 (693)
Q Consensus 107 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 156 (693)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999999999874
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.6e-09 Score=98.22 Aligned_cols=214 Identities=16% Similarity=0.198 Sum_probs=153.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-C--hhhHHHHHHHHHhCCCHHHH
Q 005512 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS-D--VFVGNSLIAMYGKCGRVDVC 198 (693)
Q Consensus 122 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~~~g~~~~A 198 (693)
++++++|.++|-+|.+.. +-+..+--+|-+.+.+.|..+.|.++|+.+.++.--+ + ....-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467899999999998743 2233445566778889999999999999998752111 1 23455677889999999999
Q ss_pred HHHhccCCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH-------hcCCchHHHHHHHHH
Q 005512 199 RQLFDEMPERN---VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-------CVRKVSEADDVCRVV 268 (693)
Q Consensus 199 ~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~-------~~~~~~~a~~~~~~~ 268 (693)
+.+|..+.+.. ......|+..|-+..+|++|++.-+++.+.+..+..+.+...|| ...+++.|..++..+
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999887733 33667789999999999999999999999888777766544433 335566666666666
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChh----hHHHHHHHHHHcCCchHHHHHHHHhHHC
Q 005512 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV----SWTSMIEAYAQADLPLEALEVYRQMILR 337 (693)
Q Consensus 269 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (693)
.+.. +..+.+.-.+.+.+...|+++.|.+.++.+.+.|+. ....|..+|.+.|++++.+..+.++.+.
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6654 333444455667777777777777777777665543 3455666777777777777777766654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-07 Score=91.39 Aligned_cols=270 Identities=11% Similarity=0.024 Sum_probs=194.7
Q ss_pred CCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHH---HHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhH
Q 005512 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM---IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349 (693)
Q Consensus 273 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 349 (693)
++.++....++.+.|...|+.++|...|++...-|+.+...| ...+.+.|+.+....+...+.... .-+...|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 345666778889999999999999999998765554443333 334567788888887777776432 1112222222
Q ss_pred HHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC--C-CCHhHHHHHHHHHHhcCChH
Q 005512 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK--Q-KNVISWSTMISGYGMHGHGR 426 (693)
Q Consensus 350 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~ 426 (693)
........+++.|..+-+..++.. +.+...+-.-...+...|+.++|.--|+... . -+..+|.-|+..|...|...
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 233344567777777777666643 2223333233355667899999999998876 3 47889999999999999999
Q ss_pred HHHHHHHHHHhccCCChhHHHHHH-HHHHhc-CCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHH
Q 005512 427 EALFLFDQMKALIKPDHITFVSVL-SACSHA-GLIDEGWECFNSMLRDFGVAPR-PEHYACMVDMLGRAGKLNEAREFIE 503 (693)
Q Consensus 427 ~A~~~~~~m~~~~~p~~~t~~~ll-~~~~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 503 (693)
+|.-+-+.....++.+..+...+. ..|.-. .--++|.+++++.. .+.|+ ....+.+...+.+.|..+++..+++
T Consensus 386 EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 999888877766666777776663 444432 23467888888765 44554 4456778888999999999999998
Q ss_pred hC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh
Q 005512 504 RM-PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547 (693)
Q Consensus 504 ~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 547 (693)
+. ...||...-+.|...++..+.+.+|...|..++.++|++..+
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 87 567899999999999999999999999999999999988543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-08 Score=97.62 Aligned_cols=298 Identities=12% Similarity=0.083 Sum_probs=209.4
Q ss_pred HHHHHHHh--CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 005512 114 VMIRAFVD--NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191 (693)
Q Consensus 114 ~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 191 (693)
.+..+..+ .|+|.+|.++..+-.+.+-.| ...|..-..+.-..||.+.+-+++.++.+..-.++..+.-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34444433 689999999988877766332 233555566777889999999999988887446677778888888888
Q ss_pred CCCHHHHHHHhccCC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHH
Q 005512 192 CGRVDVCRQLFDEMP---ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV 268 (693)
Q Consensus 192 ~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~ 268 (693)
.|+.+.|+.-.++.. .++.........+|.+.|++.+.+.++..|.+.|.-.|+..- +
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~--------------~----- 226 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA--------------R----- 226 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH--------------H-----
Confidence 999988887776554 367778888889999999999999999999988876554322 0
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcch
Q 005512 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345 (693)
Q Consensus 269 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 345 (693)
....+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+
T Consensus 227 ------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--- 297 (400)
T COG3071 227 ------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--- 297 (400)
T ss_pred ------HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---
Confidence 0112333444433333334444445666543 3566667778888888999999999888888876666
Q ss_pred hhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcC
Q 005512 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK--QKNVISWSTMISGYGMHG 423 (693)
Q Consensus 346 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g 423 (693)
...+-.+.+.++.+.-.+..+.-.+. .+.++..+.+|...|.|.+.+.+|...|+... .|+..+|+-+..+|.+.|
T Consensus 298 -L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 298 -LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLG 375 (400)
T ss_pred -HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC
Confidence 22233455666665555555544442 23344777888888888899999988888765 578888888888888888
Q ss_pred ChHHHHHHHHHHHhc-cCCC
Q 005512 424 HGREALFLFDQMKAL-IKPD 442 (693)
Q Consensus 424 ~~~~A~~~~~~m~~~-~~p~ 442 (693)
+..+|.+.+++.... .+|+
T Consensus 376 ~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 376 EPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred ChHHHHHHHHHHHHHhcCCC
Confidence 888888888887655 4444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-07 Score=98.57 Aligned_cols=394 Identities=14% Similarity=0.119 Sum_probs=259.4
Q ss_pred CCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH--
Q 005512 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI-- 248 (693)
Q Consensus 174 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-- 248 (693)
.+.-|..+|..|.-+..++|+++.+-+.|++... .....|+.+-..|...|.-..|+.+++.-......|+..+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4556888999999999999999999999998754 34568999999999999999999999987766544654433
Q ss_pred --HHHHH-hcCCchHHHHHHHHHHH--hCC--CCchhHHHHHHHHHHHc-----------CCchhHHHHHhcccCC---C
Q 005512 249 --LNAMA-CVRKVSEADDVCRVVVD--NGL--DLDQSLQNAAMVMYARC-----------GRMDMARRFFEGILNK---D 307 (693)
Q Consensus 249 --l~~~~-~~~~~~~a~~~~~~~~~--~g~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~~~~~---~ 307 (693)
.+.|. +.+.+++|...-..+++ .+. ......+-.+.-+|... ....++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34443 45777777777666666 221 12233444444445432 1233456666665332 3
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHH-hcCCCchhHHHHHHH
Q 005512 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH-CFLGNQLALDTAVVD 386 (693)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~ 386 (693)
+..--.+.--|+..++.+.|++..++....+-.-+...+..+.-.+...+++..|..+.+.... .|....... .-+.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~--~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD--GKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch--hhhh
Confidence 3333334445777888999999999998876666777787777777888899999988877665 221110000 0011
Q ss_pred HHHhhCCHHHHHHHHHhc--------------------------C----C-CCH-hHHHHHHHHHHhcCChHHHHHHHHH
Q 005512 387 LYVKCGSLMHARKVFDRM--------------------------K----Q-KNV-ISWSTMISGYGMHGHGREALFLFDQ 434 (693)
Q Consensus 387 ~y~k~g~~~~A~~~~~~~--------------------------~----~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 434 (693)
.-.+-++.++|......+ . + .|. .++..+. +..+ -+.+.+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQLKSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhhhhcccccc-
Confidence 111233444443322221 1 0 111 1222111 1111 11111000000
Q ss_pred HHhc-cCCCh--------hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005512 435 MKAL-IKPDH--------ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 435 m~~~-~~p~~--------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (693)
+... +.|.. ..+......+...+..++|...+.++.+ -..-....|......+...|.++||.+.|...
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 2222 23322 2244556677888999999988887764 44445667777788899999999999998776
Q ss_pred -CCCCC-hhhHHHHHHHHHhcCCHHHHHH--HHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 506 -PIRPD-AGVWGSLLGACRIHSNVELAEM--AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 506 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
.+.|+ +.+..++...+.+.|+...|.. +...+++++|.++.+|..|+.++.+.|+.++|.+.|+...+-
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 56775 6677888888999999888888 999999999999999999999999999999999999988764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.7e-08 Score=96.88 Aligned_cols=265 Identities=13% Similarity=0.079 Sum_probs=139.0
Q ss_pred HHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHHHHHHcCCchHHH
Q 005512 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEAL 328 (693)
Q Consensus 252 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 328 (693)
|-...++.+..++.+.+.+.. ++....+..-|..+...|+-.+-..+=.++.+ ...++|-++..-|.-.|+..+|.
T Consensus 254 ~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHH
Confidence 334444444444444444432 22222223333344444444333333333322 12344555555555555555555
Q ss_pred HHHHHhHHCCcccC-cchhhhHHHHhhccccHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhCCHHHHHHHHHhcC-
Q 005512 329 EVYRQMILRRVLPD-SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN-QLALDTAVVDLYVKCGSLMHARKVFDRMK- 405 (693)
Q Consensus 329 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~~~- 405 (693)
+.|.+.... .|. ...|...-.+++..+..++|...+..+-+.-... -+..|. .--|.+.++++-|.+.|.+..
T Consensus 333 ry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYl--gmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 333 RYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYL--GMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHH--HHHHHHhccHHHHHHHHHHHHh
Confidence 555443221 111 1233344444444455555554444444311000 011111 122555666666666666654
Q ss_pred --CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc---cCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 005512 406 --QKNVISWSTMISGYGMHGHGREALFLFDQMKAL---IKP----DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476 (693)
Q Consensus 406 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 476 (693)
..|+...+-+.-.....+.+.+|..+|+..... +-+ -..+++.|..+|.+.+.+++|+..++..+. -.+
T Consensus 409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~ 486 (611)
T KOG1173|consen 409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSP 486 (611)
T ss_pred cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCC
Confidence 235555555555555566667777777665532 111 234577777778888888888888877775 455
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCChhhHHHHHHHHHh
Q 005512 477 PRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPDAGVWGSLLGACRI 523 (693)
Q Consensus 477 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 523 (693)
.+..++.++.-.|...|+++.|.+.|.+. .++||..+-..+++.+..
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 67777777777788888888888887766 667777777777765544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-08 Score=92.46 Aligned_cols=282 Identities=11% Similarity=0.124 Sum_probs=164.4
Q ss_pred cCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHhcCCchHHHHHHHHHHHhCCCC---chhHHHHHHHHHHHcCCchhHH
Q 005512 223 NGCYEEGLLLFKRMMDEGIRPNR--VVILNAMACVRKVSEADDVCRVVVDNGLDL---DQSLQNAAMVMYARCGRMDMAR 297 (693)
Q Consensus 223 ~g~~~~A~~~~~~m~~~g~~p~~--~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A~ 297 (693)
+.++++|+++|-+|.+.....-. .|+.+.+.+.|..+.|..+|..+.++---+ -..+.-.|..-|.+.|-+|.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 46777788888777764211111 122666677777777777777776642111 1234456777888889999999
Q ss_pred HHHhcccCCCh---hhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcC
Q 005512 298 RFFEGILNKDL---VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374 (693)
Q Consensus 298 ~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 374 (693)
.+|..+.+.+. .....|+..|-+..++++|++.-+++...+-.+..+-.. .-|
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA---qfy--------------------- 183 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA---QFY--------------------- 183 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH---HHH---------------------
Confidence 99988876433 345667888888899999998888887765443322111 111
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC--hhHHHHH
Q 005512 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN---VISWSTMISGYGMHGHGREALFLFDQMKALIKPD--HITFVSV 449 (693)
Q Consensus 375 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~--~~t~~~l 449 (693)
--|...+....+.+.|..++.+..+.| +..--.+...+...|+++.|.+.++...+. .|+ ..+...|
T Consensus 184 -------CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L 255 (389)
T COG2956 184 -------CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEML 255 (389)
T ss_pred -------HHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHH
Confidence 122233334455666666666655322 222223345566677777777777766653 233 3445666
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHH-HHhCCCCCChhhHHHHHHHHHh---cC
Q 005512 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF-IERMPIRPDAGVWGSLLGACRI---HS 525 (693)
Q Consensus 450 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~---~g 525 (693)
..+|.+.|+.+++...+..+.+. .+....-..+.+......-.+.|... .+.+.-+|+...+..++..-.. .|
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccccc
Confidence 67777777777777777666542 23333334444444433344444443 4455667777777777765432 23
Q ss_pred CHHHHHHHHHHHhh
Q 005512 526 NVELAEMAAKALFD 539 (693)
Q Consensus 526 ~~~~a~~~~~~~~~ 539 (693)
...+...+++.++.
T Consensus 333 ~~k~sL~~lr~mvg 346 (389)
T COG2956 333 RAKESLDLLRDMVG 346 (389)
T ss_pred chhhhHHHHHHHHH
Confidence 34455555555543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.4e-09 Score=106.52 Aligned_cols=230 Identities=13% Similarity=0.129 Sum_probs=167.4
Q ss_pred chhhhHHHHhhccccHHHHHHHHHHHHHh-----cC-CCch-hHHHHHHHHHHhhCCHHHHHHHHHhcCC-------C--
Q 005512 344 VTFLGVIRACSSLASFQQARTVHGIIIHC-----FL-GNQL-ALDTAVVDLYVKCGSLMHARKVFDRMKQ-------K-- 407 (693)
Q Consensus 344 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----~~-~~~~-~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~-- 407 (693)
.|...+...|...|+++.|..++...++. |. .+.+ ...+.+..+|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455666677777777777777666553 21 1222 2233466788889999999988888762 1
Q ss_pred --CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-------cCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhC--C
Q 005512 408 --NVISWSTMISGYGMHGHGREALFLFDQMKAL-------IKPDH-ITFVSVLSACSHAGLIDEGWECFNSMLRDFG--V 475 (693)
Q Consensus 408 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~ 475 (693)
-..+++.|...|...|++++|...+++..+. ..|.. .-++.+...|...+.+++|..+++...+-+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2346777888899999999998888877543 12222 2366777789999999999999888766443 2
Q ss_pred CCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-------CC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhh--
Q 005512 476 APR----PEHYACMVDMLGRAGKLNEAREFIERM-------PI--RP-DAGVWGSLLGACRIHSNVELAEMAAKALFD-- 539 (693)
Q Consensus 476 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~--~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-- 539 (693)
.++ ..+++.|...|...|++++|.+++++. .. .+ ....++.+..+|.+.++.++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 357899999999999999999999887 11 22 245677788889999999999999988764
Q ss_pred --cCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 540 --LDAEN---PGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 540 --~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
.+|+. ..+|..|+..|.+.|++++|.++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34443 45788999999999999999999998764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.1e-11 Score=83.87 Aligned_cols=50 Identities=30% Similarity=0.495 Sum_probs=47.7
Q ss_pred CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhc
Q 005512 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355 (693)
Q Consensus 306 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 355 (693)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-08 Score=93.09 Aligned_cols=433 Identities=14% Similarity=0.094 Sum_probs=228.9
Q ss_pred HHHccCChHHHHHHhcccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHH-HHHHHHhccCChHH
Q 005512 86 QYASLGSISHAFSLFSSVSDS--CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFP-FVLKACGYLRDIEF 162 (693)
Q Consensus 86 ~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~~~~~~ 162 (693)
.|-+.|++++|..++..+..+ ++...|-.|.-++.-.|.+.+|..+-... |+..... .++...-+.++-++
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHH
Confidence 445667777777766654322 34455555555555556666666554432 2222222 23334445566666
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC--CCcchHHHHH-HHHHhcCCchHHHHHHHHHHHC
Q 005512 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVVTWSSLT-GAYAQNGCYEEGLLLFKRMMDE 239 (693)
Q Consensus 163 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~ 239 (693)
-...++.+.+.- .---+|..+.-..-.+.+|.+++.++.. |+....|..+ -+|.+..-++-+.+++.-.++.
T Consensus 140 ~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 140 ILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 666665554321 1223344444344456777777777655 3444444433 3556666666666666665554
Q ss_pred CCCCCHHHH--HHHHHhcCC--chHHHHHHHHHHHhCCCCchhHHHHHHHHHHHc-----CCchhHHHHHhcccCCChhh
Q 005512 240 GIRPNRVVI--LNAMACVRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC-----GRMDMARRFFEGILNKDLVS 310 (693)
Q Consensus 240 g~~p~~~t~--l~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-----g~~~~A~~~f~~~~~~~~~~ 310 (693)
.||+..- +.+|....- -..+++-...+...+-..- ..+.-.++. .+-+.|.+++-.+.+.=+.+
T Consensus 215 --~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~-----~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEA 287 (557)
T KOG3785|consen 215 --FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY-----PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEA 287 (557)
T ss_pred --CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-----hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHh
Confidence 3333222 555543221 1122222333332221110 112222222 23355566555544333334
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 005512 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390 (693)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k 390 (693)
--.++--|.++++..+|..+.+++.- ..|-......+..+ ++.+-...
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~a------------------------------alGQe~gS 335 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFA------------------------------ALGQETGS 335 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHH------------------------------HhhhhcCc
Confidence 44455567777777777777665421 11211111111111 11111111
Q ss_pred hCCHHHHHHHHHhcCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005512 391 CGSLMHARKVFDRMKQ-----KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWEC 465 (693)
Q Consensus 391 ~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 465 (693)
...+.-|...|+-.-. ..+.--.+|.+.+.-..++++.+-.+..+..-+..|..--..+..+.+..|.+.+|.++
T Consensus 336 reHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHH
Confidence 1223344444443321 22333455666666667777777777777665333333334567788888999999999
Q ss_pred HHHhHHhhCCCCChhHH-HHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCC
Q 005512 466 FNSMLRDFGVAPRPEHY-ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL-GACRIHSNVELAEMAAKALFDLDAE 543 (693)
Q Consensus 466 ~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~ 543 (693)
|-.+.. ..+ .|..+| +.|...|.++|+.+-|++++-++.-..+..+...+| +-|.+.+.+--|-+.|..+..++|.
T Consensus 416 f~~is~-~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 416 FIRISG-PEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HhhhcC-hhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 877643 122 344444 556788999999999999998886444555555555 6688899999999999998888884
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 005512 544 NPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580 (693)
Q Consensus 544 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 580 (693)
. ..| .|+-....-+|..+......+.|
T Consensus 494 p-EnW---------eGKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 494 P-ENW---------EGKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred c-ccc---------CCccchHHHHHHHHHcCCCCCCc
Confidence 3 222 34444445566665554433333
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-08 Score=111.22 Aligned_cols=243 Identities=13% Similarity=0.051 Sum_probs=172.9
Q ss_pred chHHHHHHHHhHHCCcccCcc-hhhhHHHHhh---------ccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCC
Q 005512 324 PLEALEVYRQMILRRVLPDSV-TFLGVIRACS---------SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393 (693)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~ 393 (693)
.++|+++|++..+. .|+.. .+..+..++. ..+++++|...++.+++.. +.+...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 56788888887765 44432 3333322222 2345788888888888765 4466777888888999999
Q ss_pred HHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005512 394 LMHARKVFDRMKQ--K-NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDH-ITFVSVLSACSHAGLIDEGWECFNSM 469 (693)
Q Consensus 394 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~ 469 (693)
+++|...|++..+ | +...|..+...+...|++++|+..+++..+ ..|+. ..+..++..+...|++++|...++++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~-l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK-LDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999773 4 466788889999999999999999999988 45543 33444455667789999999999988
Q ss_pred HHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 005512 470 LRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERM-PIRPDA-GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546 (693)
Q Consensus 470 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 546 (693)
.+. ..| +...+..+...|...|++++|.+.++++ +..|+. ..++.+...+...| +.|...++.+++..-..+.
T Consensus 433 l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 433 RSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 752 234 4556777888999999999999999987 444543 44455555667666 4777777777664322222
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 547 RYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 547 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
....+...|+-.|+-+.+..+ +++.+.+
T Consensus 509 ~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 509 NPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred CchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 223366778888888888877 7777654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-07 Score=91.30 Aligned_cols=218 Identities=10% Similarity=0.042 Sum_probs=162.9
Q ss_pred HHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHH
Q 005512 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397 (693)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 397 (693)
+.-.|+.-+|.+.|+..+.....++.. |..+-.++....+.++..+.|..+.+.+ +.+..+|.--..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 445678888888888887764433332 6666667778888888888888887765 34556666667777888899999
Q ss_pred HHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhC
Q 005512 398 RKVFDRMKQK---NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474 (693)
Q Consensus 398 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 474 (693)
..-|++...- ++..|-.+--+..+.++++++...|++.+..++.-+..|+.....+...++++.|.+.|+..+.
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---
Confidence 9999988753 4556666666666788999999999999887777788888888999999999999999998874
Q ss_pred CCCC---------hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 005512 475 VAPR---------PEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541 (693)
Q Consensus 475 ~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 541 (693)
+.|+ +.+-..++-.- -.+++..|.+++++. .+.| -...+.+|...-.+.|+.++|+++|++...+-
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333 11122222222 348899999999887 5555 46778888888899999999999999987654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-08 Score=102.33 Aligned_cols=232 Identities=18% Similarity=0.170 Sum_probs=157.0
Q ss_pred hhHHHHHHHHHHHcCCchhHHHHHhcccCC----------Chh-hHHHHHHHHHHcCCchHHHHHHHHhHHCC---cccC
Q 005512 277 QSLQNAAMVMYARCGRMDMARRFFEGILNK----------DLV-SWTSMIEAYAQADLPLEALEVYRQMILRR---VLPD 342 (693)
Q Consensus 277 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~ 342 (693)
..+..-|..+|...|+++.|..+|....+. .+. ..+.+...|...+++.+|..+|+++...- .-++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555888888888888888888765332 111 12334556667777777777777665320 0011
Q ss_pred cchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC----------CCHh-H
Q 005512 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ----------KNVI-S 411 (693)
Q Consensus 343 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~----------~~~~-~ 411 (693)
.. .-..+++.|..+|.+.|++++|...+++..+ +.+. .
T Consensus 279 h~-------------------------------~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 279 HP-------------------------------AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred CH-------------------------------HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 11 1123444555667777777766666555431 2332 3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc----cCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhh---CC--CC-
Q 005512 412 WSTMISGYGMHGHGREALFLFDQMKAL----IKPDH----ITFVSVLSACSHAGLIDEGWECFNSMLRDF---GV--AP- 477 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~--~~- 477 (693)
.+.++..+...+++++|..++++..+. ..++. .++..+...+.+.|++++|.++|+++++.. +. .+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 555667788889999999988877554 33333 568889999999999999999999887642 11 12
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005512 478 RPEHYACMVDMLGRAGKLNEAREFIERM--------PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
....++.|...|.+.+.+++|.++|.+. +..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2345778888999999999999988775 23344 46788999999999999999999998874
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-08 Score=95.35 Aligned_cols=195 Identities=18% Similarity=0.132 Sum_probs=110.4
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 005512 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387 (693)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 387 (693)
...+..+...+...|++++|.+.+++..+.. |+ +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHH
Confidence 4567777788888888888888888776542 22 12223334444
Q ss_pred HHhhCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-c-CCChhHHHHHHHHHHhcCCHHHH
Q 005512 388 YVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-I-KPDHITFVSVLSACSHAGLIDEG 462 (693)
Q Consensus 388 y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-~p~~~t~~~ll~~~~~~g~~~~a 462 (693)
|...|++++|.+.|++.. ..+...+..+...+...|++++|++.|++.... . ......+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555443 123344555555566666666666666665543 1 12233445555566666666666
Q ss_pred HHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 005512 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDL 540 (693)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 540 (693)
.+.+....+ ..+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.++|....+.+...
T Consensus 155 ~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666666654 22223445566666666666666666666654 1122 3444445555566667777776666655544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-06 Score=80.62 Aligned_cols=191 Identities=12% Similarity=0.027 Sum_probs=127.3
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-------hHHHHHHHHHHHhc-cCCCh-hHHHHHHHHH
Q 005512 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH-------GREALFLFDQMKAL-IKPDH-ITFVSVLSAC 453 (693)
Q Consensus 383 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~-~~p~~-~t~~~ll~~~ 453 (693)
.|+--|.+.+++.+|..+.++....++.-|-.-.-.++..|+ ..-|.+.|+-.-.. ..-|. .--.++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 456668899999999999998876555444333333344443 33444444433332 33232 2234455555
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCChhhHHHHHH-HHHhcCCHHHH
Q 005512 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP--IRPDAGVWGSLLG-ACRIHSNVELA 530 (693)
Q Consensus 454 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~-~~~~~g~~~~a 530 (693)
.-...+++.+-++..+.. +=...|...+| +..+++..|.+.+|.++|-++. .-.|..+|.+++. +|..++.++.|
T Consensus 370 FL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 566678999999888865 45555555554 7889999999999999998873 1247888888875 56778889888
Q ss_pred HHHHHHHhhcCCCC-chhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 005512 531 EMAAKALFDLDAEN-PGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577 (693)
Q Consensus 531 ~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 577 (693)
..++-+.- .|.+ ......+++-|.+++.+=-|.+.|+.+...+..
T Consensus 448 W~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 448 WDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 77654421 2322 233456678899999999999999988776543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.9e-06 Score=84.21 Aligned_cols=173 Identities=16% Similarity=0.201 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHhccCCC-----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 005512 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPE-----RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254 (693)
Q Consensus 180 ~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~ 254 (693)
.+|-..+....+.|++..-+..|++... .....|...+......|-++-++.+|++.++-.+.. ...++..++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~-~eeyie~L~~ 181 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEA-REEYIEYLAK 181 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHH-HHHHHHHHHh
Confidence 4666677777788888888888776543 234467878887788888888888888887653322 3345777788
Q ss_pred cCCchHHHHHHHHHHHhC------CCCchhHHHHHHHHHHHcCCch---hHHHHHhcccCC--C--hhhHHHHHHHHHHc
Q 005512 255 VRKVSEADDVCRVVVDNG------LDLDQSLQNAAMVMYARCGRMD---MARRFFEGILNK--D--LVSWTSMIEAYAQA 321 (693)
Q Consensus 255 ~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~~~---~A~~~f~~~~~~--~--~~~~~~li~~~~~~ 321 (693)
.+++++|.+.+..++... .+.+...|.-+-+..++.-+.- ....+++.+..+ | -..|++|..-|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 888888888777765421 2445556666666666553322 234455555442 2 34688888889999
Q ss_pred CCchHHHHHHHHhHHCCcccCcchhhhHHHHhhc
Q 005512 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355 (693)
Q Consensus 322 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 355 (693)
|.+++|.++|.+.... ..+..-|+.+..+|+.
T Consensus 262 g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 9999998888887765 2334445555555543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-08 Score=108.13 Aligned_cols=212 Identities=14% Similarity=0.047 Sum_probs=162.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh---------hCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCC
Q 005512 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK---------CGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGH 424 (693)
Q Consensus 357 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 424 (693)
+.+++|...+..+++.. +.+...+..+..+|.. .+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678888998888754 2234455555555442 2448899999998873 467788888889999999
Q ss_pred hHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHH
Q 005512 425 GREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP-EHYACMVDMLGRAGKLNEAREFIE 503 (693)
Q Consensus 425 ~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~ 503 (693)
+++|+..|++..+..+.+...+..+..++...|++++|...++.+.+ +.|+. ..+..+...+...|++++|.+.++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999884444567788888999999999999999999975 34442 233344556777899999999998
Q ss_pred hCC--CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 504 RMP--IRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 504 ~m~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
+.- ..|+ ...+..+..++...|+.++|...++++....|.+......|...|...| ++|...++.+.+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 872 2354 4446666677889999999999999998888888778888888888888 4888878777653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-08 Score=98.53 Aligned_cols=211 Identities=16% Similarity=0.105 Sum_probs=141.9
Q ss_pred cHHHHHHHHHHHHHhc-CCCc--hhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 005512 358 SFQQARTVHGIIIHCF-LGNQ--LALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFL 431 (693)
Q Consensus 358 ~~~~a~~i~~~~~~~~-~~~~--~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 431 (693)
..+.+..-+..++... ..|+ ...+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444444555554321 1222 34566677778888999999998888763 4677899999999999999999999
Q ss_pred HHHHHhccCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCC
Q 005512 432 FDQMKALIKP-DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM--PIR 508 (693)
Q Consensus 432 ~~~m~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~ 508 (693)
|++..+ +.| +..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.|++. ...
T Consensus 121 ~~~Al~-l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 121 FDSVLE-LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHH-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 999887 445 467778888888889999999999988875 2444322222223345667899999998664 222
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHh-------hcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 509 PDAGVWGSLLGACRIHSNVELAEMAAKALF-------DLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 509 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
|+ .|...+ .....|+...+ ..++.+. ++.|+.+.+|..|+.+|.+.|++++|...|++..+.++
T Consensus 197 ~~--~~~~~~-~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 197 KE--QWGWNI-VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred cc--ccHHHH-HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33 233212 22224444333 2333333 44556667899999999999999999999999887553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.4e-06 Score=79.25 Aligned_cols=385 Identities=11% Similarity=0.040 Sum_probs=235.6
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchH-HHHHHHHHhcCC-chHHHHHHHHHHHCCCCCCHHHHHHHHHhcC
Q 005512 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTW-SSLTGAYAQNGC-YEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256 (693)
Q Consensus 179 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~ 256 (693)
...-.-.+..|-..++-+.|.....+.+..-...- |.|+.-+.+.|. -.++.--+.+.+...+ -...-+.+..+.+
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp--~aL~~i~~ll~l~ 174 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP--MALQVIEALLELG 174 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc--hHHHHHHHHHHHh
Confidence 33444567777778888899998888877433333 334433333332 2222222333222110 0000011111100
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHc--CCchhHHHHHhcc-----cCCChhhHHHHHHHHHHcCCchHHHH
Q 005512 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC--GRMDMARRFFEGI-----LNKDLVSWTSMIEAYAQADLPLEALE 329 (693)
Q Consensus 257 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~--g~~~~A~~~f~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (693)
+..++..-..+-+...++.......-+.+|+.+ ++-..|...|-.+ ...|+.....+...+...|+..+|..
T Consensus 175 -v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 175 -VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred -hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence 001111111122222344444444455555554 4444444444332 33477788899999999999999999
Q ss_pred HHHHhHHCCcccCcch----hhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC
Q 005512 330 VYRQMILRRVLPDSVT----FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405 (693)
Q Consensus 330 ~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 405 (693)
.|.+.+.. .|+..+ |..+ +...|+++....+...+.... +-+...|-.-.......++++.|..+-++..
T Consensus 254 ~Fe~~~~~--dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I 327 (564)
T KOG1174|consen 254 IFSSTLCA--NPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCI 327 (564)
T ss_pred HHHHHhhC--ChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 99987654 333222 2222 245667776666666554422 0111111111222334567888888888776
Q ss_pred C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHH
Q 005512 406 Q---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482 (693)
Q Consensus 406 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 482 (693)
+ +++..+-.-...+.+.|+.++|.-.|+..+..-+-+...|..|+.+|...|.+.+|.-.-....+ -++.+..+.
T Consensus 328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~L 405 (564)
T KOG1174|consen 328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSL 405 (564)
T ss_pred ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchhhh
Confidence 4 34445544456788899999999999998884455789999999999999999999888777665 344444444
Q ss_pred HHHH-HHHhh-cCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc
Q 005512 483 ACMV-DMLGR-AGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558 (693)
Q Consensus 483 ~~li-~~~~~-~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 558 (693)
+.+. +.+.- ..--++|.+++++. .++|+ ....+.+...|...|..+.++.++++.+...|++ ..++.|++.+...
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQ 484 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHh
Confidence 4432 22222 23347788998876 67776 4455666677889999999999999999988865 5889999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 005512 559 GKRIEANRIRALMKRRG 575 (693)
Q Consensus 559 g~~~~a~~~~~~m~~~~ 575 (693)
+.+.+|...|......+
T Consensus 485 Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALRQD 501 (564)
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 99999999998876643
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-05 Score=85.17 Aligned_cols=460 Identities=13% Similarity=0.153 Sum_probs=266.6
Q ss_pred HHHHHHHHHccCChHHHHHHhcccCC--C----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 005512 80 VTNLVSQYASLGSISHAFSLFSSVSD--S----CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKA 153 (693)
Q Consensus 80 ~~~li~~y~~~g~~~~A~~~f~~~~~--~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 153 (693)
+..+.+.+-|.|-...|++.+..+.. | .+...-..+ -.|.-.-.++.+++.++.|+..+++.|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwL-v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWL-VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44556666777777777777766532 1 011111122 2344445677788888888877777777766666666
Q ss_pred HhccCChHHHHHHHHHHHHh-----------CCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC---------------
Q 005512 154 CGYLRDIEFGVKVHKDAVDS-----------GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--------------- 207 (693)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------------- 207 (693)
|...-..+...++|+..... ++..|+.+.-..|.+-++.|++.+.+++-++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 65555566666777765432 2455667777788899999999998888765421
Q ss_pred ----------------CCcchH------HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH--------------HHHHH
Q 005512 208 ----------------RNVVTW------SSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV--------------VILNA 251 (693)
Q Consensus 208 ----------------~~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------------t~l~~ 251 (693)
+|.+.| --.|..|.+.=++...-.+.-.+++.....+.. .+..-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 111111 123445554444433333333333222211111 00122
Q ss_pred HHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhH-----------------------------------
Q 005512 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA----------------------------------- 296 (693)
Q Consensus 252 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A----------------------------------- 296 (693)
+-+.+++..-...++..+..| ..|+.++|+|...|...++-.+-
T Consensus 848 vEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 233334444444555555566 45677778877776644322111
Q ss_pred ---H------HHHhcc-----cCCCh--------------------------------hhHHHHHHHHHHcCCchHHHHH
Q 005512 297 ---R------RFFEGI-----LNKDL--------------------------------VSWTSMIEAYAQADLPLEALEV 330 (693)
Q Consensus 297 ---~------~~f~~~-----~~~~~--------------------------------~~~~~li~~~~~~g~~~~A~~~ 330 (693)
. .+|... .+.|. ..-+.-+.++...+-+.+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 0 000000 01122 2233344555666666666677
Q ss_pred HHHhHHCCcccC--cchhhhHHHH---------------------------hhccccHHHHHHHHHHHHHhcCCCchhHH
Q 005512 331 YRQMILRRVLPD--SVTFLGVIRA---------------------------CSSLASFQQARTVHGIIIHCFLGNQLALD 381 (693)
Q Consensus 331 ~~~m~~~g~~p~--~~t~~~ll~a---------------------------~~~~~~~~~a~~i~~~~~~~~~~~~~~~~ 381 (693)
+++..-..-..+ ...-+.++-. +...+-+++|..||.. +..+....
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkk-----f~~n~~A~ 1081 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKK-----FDMNVSAI 1081 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHH-----hcccHHHH
Confidence 666653221110 0001111111 1111112222222221 12222222
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHH
Q 005512 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDE 461 (693)
Q Consensus 382 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~ 461 (693)
+.|++ ..+.++.|.+.-++..+ +..|..+..+-.+.|...+|++-|-+. .|+..|.-++..+.+.|.+++
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~ed 1151 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYED 1151 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHH
Confidence 22222 23444555544444433 457999999999999999999877442 467789999999999999999
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 005512 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541 (693)
Q Consensus 462 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 541 (693)
-.+++..+.++ .-.|.+. +.||-+|++.+++.|-.+++. -||..-...+..-|...|.++.|.-+|..
T Consensus 1152 Lv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----- 1219 (1666)
T KOG0985|consen 1152 LVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN----- 1219 (1666)
T ss_pred HHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH-----
Confidence 99999888764 5556555 679999999999999888874 47888888888999999999999888874
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005512 542 AENPGRYVILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 542 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 571 (693)
...|..|+..+...|.+..|...-++.
T Consensus 1220 ---vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1220 ---VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 356778888888888887776555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-06 Score=89.69 Aligned_cols=411 Identities=14% Similarity=0.131 Sum_probs=223.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCccc-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCC--
Q 005512 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFT-FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG-- 193 (693)
Q Consensus 117 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-- 193 (693)
..+...|++++|++.++.-... -+|..+ +......+.+.|+.++|..++..+++.++ .|...|..|..+.+-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 4457889999999998775432 345444 45556778888999999999999998873 35555666666553222
Q ss_pred ---CHHHHHHHhccCCC--CCcchHHHHHHHHHhcCCc-hHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHH
Q 005512 194 ---RVDVCRQLFDEMPE--RNVVTWSSLTGAYAQNGCY-EEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV 267 (693)
Q Consensus 194 ---~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~ 267 (693)
+.+....+++++.. |...+...+.-.+.....+ ..+...+..+...|+.+-
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPsl----------------------- 145 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSL----------------------- 145 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchH-----------------------
Confidence 34455555555433 2111111111111111112 123334444445553222
Q ss_pred HHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcc------------------cCCChhhH--HHHHHHHHHcCCchHH
Q 005512 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI------------------LNKDLVSW--TSMIEAYAQADLPLEA 327 (693)
Q Consensus 268 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~------------------~~~~~~~~--~~li~~~~~~g~~~~A 327 (693)
++.|-..|....+.+-..+++... ..|....| .-+...|...|++++|
T Consensus 146 ------------F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 146 ------------FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred ------------HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 222222222222222222222111 11223234 4556677788888888
Q ss_pred HHHHHHhHHCCcccC-cchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC
Q 005512 328 LEVYRQMILRRVLPD-SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406 (693)
Q Consensus 328 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~ 406 (693)
++.+++.++. .|+ ...|..-...+-+.|++.+|...++.+.... ..|..+.+-.+..+.++|++++|.+++....+
T Consensus 214 l~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 214 LEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 8888888776 454 3455566667778888888888888887755 45667777777888889999999988887775
Q ss_pred CCH----------hHHH--HHHHHHHhcCChHHHHHHHHHHHhc---cCCCh-------------hHHHHHHHHHHhcCC
Q 005512 407 KNV----------ISWS--TMISGYGMHGHGREALFLFDQMKAL---IKPDH-------------ITFVSVLSACSHAGL 458 (693)
Q Consensus 407 ~~~----------~~~~--~li~~~~~~g~~~~A~~~~~~m~~~---~~p~~-------------~t~~~ll~~~~~~g~ 458 (693)
++. ..|- .-..+|.+.|++..|++-|..+.+. +.-|. .+|..++...-+...
T Consensus 291 ~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~ 370 (517)
T PF12569_consen 291 EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRS 370 (517)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 441 1342 2357788899999988888777654 33332 233333332221111
Q ss_pred -------HHHHHHHHHHhHHhhCCCC--C---------hhHHHHHHHHH---hhcCCHHHHHHHHH-----------hC-
Q 005512 459 -------IDEGWECFNSMLRDFGVAP--R---------PEHYACMVDML---GRAGKLNEAREFIE-----------RM- 505 (693)
Q Consensus 459 -------~~~a~~~~~~~~~~~~~~~--~---------~~~~~~li~~~---~~~g~~~~A~~~~~-----------~m- 505 (693)
...|.+++-.+........ + ..--..+-.-- .+...-+++...-. ..
T Consensus 371 ~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (517)
T PF12569_consen 371 HPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKE 450 (517)
T ss_pred CHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccc
Confidence 1223333333322100000 0 00000000000 01111111111110 00
Q ss_pred ---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 005512 506 ---PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570 (693)
Q Consensus 506 ---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 570 (693)
+.+.|......-+ .....=+++|.+.++-+.+..|++..+|..--.+|.+.|++--|.+.+.+
T Consensus 451 ~~~~~~~D~Dp~GekL--~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 451 KVEPKKKDDDPLGEKL--LKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred cccCCcCCCCccHHHH--hcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 1112221111111 12234578899999999999999999999999999999999988877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-07 Score=86.18 Aligned_cols=387 Identities=10% Similarity=0.008 Sum_probs=196.6
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC--CCcchHHHH-HHHH
Q 005512 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVVTWSSL-TGAY 220 (693)
Q Consensus 144 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~l-i~~~ 220 (693)
.--+.+++..+.+..++..+.+++..-.+.. +.+..-.+.|..+|-+..++..|-..++++.+ |...-|... ...+
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 3345556655666666666666666555543 12444455566666666666666666666544 333333221 2344
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCH--HHH-HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHH
Q 005512 221 AQNGCYEEGLLLFKRMMDEGIRPNR--VVI-LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297 (693)
Q Consensus 221 ~~~g~~~~A~~~~~~m~~~g~~p~~--~t~-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 297 (693)
.+.+.+.+|+.+...|.+. |+- ..+ +.+. .....+++..++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaA---------------------------------IkYse~Dl~g~r 132 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAA---------------------------------IKYSEGDLPGSR 132 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHH---------------------------------HhcccccCcchH
Confidence 5566666666666665432 110 011 1111 112234444555
Q ss_pred HHHhcccC-CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCC
Q 005512 298 RFFEGILN-KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376 (693)
Q Consensus 298 ~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 376 (693)
.+.++.+. .+..+.+.......+.|++++|++-|+...+-|---....|+..+ +..+.++.+.|.....++++.|+..
T Consensus 133 sLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 133 SLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred HHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhc
Confidence 55555542 333333334444445555555555555544432222233444333 2233445555555555555444321
Q ss_pred c----------------------------hhHHHHHHHHHHhhCCHHHHHHHHHhcCC-----CCHhHHHHHHHHHHhcC
Q 005512 377 Q----------------------------LALDTAVVDLYVKCGSLMHARKVFDRMKQ-----KNVISWSTMISGYGMHG 423 (693)
Q Consensus 377 ~----------------------------~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g 423 (693)
. +..+|.-...+.+.|+.+.|.+.+..|+. -|++|...+.-. -..+
T Consensus 212 HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~ 290 (459)
T KOG4340|consen 212 HPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDA 290 (459)
T ss_pred CCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccC
Confidence 1 11122223345678999999999999984 367776554321 1245
Q ss_pred ChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC-CCChhHHHHHHHHHh-hcCCHHHHHHH
Q 005512 424 HGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV-APRPEHYACMVDMLG-RAGKLNEAREF 501 (693)
Q Consensus 424 ~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~-~~g~~~~A~~~ 501 (693)
++.+..+-+.-+.+..+-...||..++-.|++..-++.|-.++.+-... -+ -.+...|+. ++++. -.-..++|.+-
T Consensus 291 ~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~L-LdaLIt~qT~pEea~KK 368 (459)
T KOG4340|consen 291 RPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDL-LDALITCQTAPEEAFKK 368 (459)
T ss_pred CccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHH-HHHHHhCCCCHHHHHHH
Confidence 5555555555555533345689999999999999999988887542210 00 112333433 34333 34466677666
Q ss_pred HHhCCCCCChhhHHHHHHH-HHhcCCHHH----HHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 502 IERMPIRPDAGVWGSLLGA-CRIHSNVEL----AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 502 ~~~m~~~p~~~~~~~ll~~-~~~~g~~~~----a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
++.+........-...+.. -.++.+-++ +++-++..+++- ..+...-++.|.+..++.-+.++|..-.+.
T Consensus 369 L~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 369 LDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 5544100000000111111 011222222 223333444332 124556778899999999999999987764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-06 Score=89.06 Aligned_cols=443 Identities=13% Similarity=0.088 Sum_probs=266.6
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc-ccHHHH
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS--CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDK-FTFPFV 150 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~l 150 (693)
..|+.+|..|.-+..+||+++.+-+.|++...- .....|+.+-..|...|....|+.+++.-......|+. ..+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 678899999999999999999999999876331 13456999999999999999999998876544323433 333333
Q ss_pred HHHHh-ccCChHHHHHHHHHHHHhC--C--CCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCC
Q 005512 151 LKACG-YLRDIEFGVKVHKDAVDSG--Y--WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225 (693)
Q Consensus 151 l~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 225 (693)
-+.|. +.+..+++..+-..++... - ......|-.+.-+|...- ....+|.- +...
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se------R~~~ 459 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE------RDAL 459 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH------HHHH
Confidence 34444 4456666666666655521 0 011122222222222110 00111110 1122
Q ss_pred chHHHHHHHHHHHCCC-CCCHHHH-HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcc
Q 005512 226 YEEGLLLFKRMMDEGI-RPNRVVI-LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303 (693)
Q Consensus 226 ~~~A~~~~~~m~~~g~-~p~~~t~-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 303 (693)
..++++.+++..+.+. .|+..-+ .--++..++++.|.+...+..+.+-..+...|.-|.-.+.-.+++.+|+.+.+..
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3567777777776543 3433333 4456677888888888888888876778888888888888888888888888765
Q ss_pred cCC---ChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhH
Q 005512 304 LNK---DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380 (693)
Q Consensus 304 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 380 (693)
.+. |.+....-+..-..-++.++|+.....+...= -+...+...+. .|....-..-...... .....+.+
T Consensus 540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w--e~~~~~q~~~~----~g~~~~lk~~l~la~~-q~~~a~s~ 612 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALW--EAEYGVQQTLD----EGKLLRLKAGLHLALS-QPTDAIST 612 (799)
T ss_pred HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHH--HhhhhHhhhhh----hhhhhhhhcccccCcc-cccccchh
Confidence 432 22211122223334577777777766654310 00000000000 0000000000000000 00111122
Q ss_pred HHHHHHHHH---hhCCHHHHHHHHHhcCCCC------HhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHH
Q 005512 381 DTAVVDLYV---KCGSLMHARKVFDRMKQKN------VISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLS 451 (693)
Q Consensus 381 ~~~li~~y~---k~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~ 451 (693)
+..+..... +.-..+.....+...+.|+ ...|......+...++.++|...+.+.....+.....|.....
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGL 692 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhH
Confidence 222211111 1111122222222222333 2356667778888999999988888776645555666777777
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-ChhhHHHHHHHHHhcCC
Q 005512 452 ACSHAGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLNEARE--FIERM-PIRP-DAGVWGSLLGACRIHSN 526 (693)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 526 (693)
.+...|.+++|.+.|.... -+.| ++....++..++.+.|+..-|.. ++..+ ...| +...|-.+...+.+.|+
T Consensus 693 ~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred HHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 8888899999999998876 4555 46678899999999997766666 77776 5556 68899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCch
Q 005512 527 VELAEMAAKALFDLDAENPG 546 (693)
Q Consensus 527 ~~~a~~~~~~~~~~~p~~~~ 546 (693)
.++|.+.|..+.++++.+|.
T Consensus 770 ~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 770 SKQAAECFQAALQLEESNPV 789 (799)
T ss_pred hHHHHHHHHHHHhhccCCCc
Confidence 99999999999999987763
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-05 Score=82.82 Aligned_cols=405 Identities=12% Similarity=0.115 Sum_probs=225.6
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHH
Q 005512 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200 (693)
Q Consensus 121 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 200 (693)
..|+-++|.+....-.+..+ -+.+.|..+--.+....++++|.+.+..+.+.+ +.|..++.-|.-.-+..|+++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 34555555555444443222 133344444444444455566666665555544 2344444444444444455544443
Q ss_pred HhccCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCHHHH---------HHHHHhcCCchHHHHHHHH
Q 005512 201 LFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNRVVI---------LNAMACVRKVSEADDVCRV 267 (693)
Q Consensus 201 ~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~---------l~~~~~~~~~~~a~~~~~~ 267 (693)
.-....+ .....|..++-++.-.|++..|..++++..+.. -.|+...+ .......|.++.+.+.+..
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 131 TRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 3333322 345678888888888888888888888877654 24554444 3344556666666655544
Q ss_pred HHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCC--ChhhHHHHH-HHHHHcCCchHHH-HHHHHhHHC---Ccc
Q 005512 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK--DLVSWTSMI-EAYAQADLPLEAL-EVYRQMILR---RVL 340 (693)
Q Consensus 268 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~---g~~ 340 (693)
.... +.......-.-.+.+.+.+++++|..++..+..+ |.+-|+... .++.+-.+.-+++ .+|....+. .-.
T Consensus 211 ~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 211 NEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC 289 (700)
T ss_pred hhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence 3322 1112223344567888999999999999988664 444444443 3333333444444 555554332 111
Q ss_pred cCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHH----HHHHHHHhcC-----------
Q 005512 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM----HARKVFDRMK----------- 405 (693)
Q Consensus 341 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~----~A~~~~~~~~----------- 405 (693)
|-.... +......-.+....++....+.|+++ ++..+...|-.-...+ -+..+...+.
T Consensus 290 p~Rlpl----svl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~ 362 (700)
T KOG1156|consen 290 PRRLPL----SVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDG 362 (700)
T ss_pred chhccH----HHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccc
Confidence 111111 11111222233344445555566544 3333444342211111 0111111111
Q ss_pred ---CCCHhHHHH--HHHHHHhcCChHHHHHHHHHHHhccCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh
Q 005512 406 ---QKNVISWST--MISGYGMHGHGREALFLFDQMKALIKPD-HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479 (693)
Q Consensus 406 ---~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 479 (693)
.|....|+. ++..|-..|+++.|+...+..+. ..|+ ..-|..-.+.+.+.|++++|..++++..+ -..+|.
T Consensus 363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId-HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR 439 (700)
T KOG1156|consen 363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID-HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADR 439 (700)
T ss_pred ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhH
Confidence 255666765 56677889999999999999888 4444 34566667889999999999999999875 445666
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-Ch--------hhHHHHH--HHHHhcCCHHHHHHHHHHHh
Q 005512 480 EHYACMVDMLGRAGKLNEAREFIERMPIRP-DA--------GVWGSLL--GACRIHSNVELAEMAAKALF 538 (693)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~--------~~~~~ll--~~~~~~g~~~~a~~~~~~~~ 538 (693)
..-+--+.-..++.+.++|.++.....-.- +. -.|-.+- .+|.+.|++.+|++-|..+.
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 655566777788999999998876652111 21 2344333 45778888888877665543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.9e-08 Score=87.43 Aligned_cols=164 Identities=16% Similarity=0.103 Sum_probs=138.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh
Q 005512 411 SWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490 (693)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 490 (693)
....|.-+|.+.|+...|..-+++..+.-+.+..++..+...|.+.|..+.|.+.|+.+.+ --+-+-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence 3445677889999999999999998885555668888899999999999999999998875 33345677888888999
Q ss_pred hcCCHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 005512 491 RAGKLNEAREFIERMPIRPD----AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566 (693)
Q Consensus 491 ~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 566 (693)
..|++++|...|++.-..|+ ..+|..+.-+..+.|+.+.|...+++.++.+|+.+.....+.....+.|++-+|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 99999999999998733333 56788888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC
Q 005512 567 IRALMKRRGV 576 (693)
Q Consensus 567 ~~~~m~~~~~ 576 (693)
+++....++.
T Consensus 195 ~~~~~~~~~~ 204 (250)
T COG3063 195 YLERYQQRGG 204 (250)
T ss_pred HHHHHHhccc
Confidence 9999887765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.9e-08 Score=92.92 Aligned_cols=228 Identities=18% Similarity=0.172 Sum_probs=136.2
Q ss_pred HHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh
Q 005512 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391 (693)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~ 391 (693)
+.|..+|.+.|.+.+|.+.|+.-... .|-..||..+-.+|.+..+...|..++..-++. ++.|+....-....+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45666777777777777777666655 333445555555555555555555554444432 222333233333344444
Q ss_pred CCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005512 392 GSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468 (693)
Q Consensus 392 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 468 (693)
++.++|.++++...+ .++.+.-.+..+|.-.++++-|+..|+++.+.-.-+...|..+.-+|...+.+|.++.-|+.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 555555555554442 23333334444555555555555555555544223344455555555555555544444444
Q ss_pred hHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 005512 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD--AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546 (693)
Q Consensus 469 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 546 (693)
+..- .-.|+ ..+|-.+.......||+..|.+.|+-.+..+|++..
T Consensus 384 Alst---------------------------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 384 ALST---------------------------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred HHhh---------------------------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 3321 01122 446766666667789999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 547 RYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 547 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
.++.|+-.-.+.|++++|+.++.......
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999887754
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.9e-06 Score=86.83 Aligned_cols=216 Identities=15% Similarity=0.185 Sum_probs=114.7
Q ss_pred HHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHH
Q 005512 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397 (693)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 397 (693)
+.+.|+++.|+..|-+... ....+.+......+.+|..|.+.+..... -..-|.-+.+-|+..|+++.|
T Consensus 716 l~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHH
Confidence 3445555555555543321 12233444455566666666665554321 122344556666777777777
Q ss_pred HHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC
Q 005512 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDH--ITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475 (693)
Q Consensus 398 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 475 (693)
.++|.+.. .++--|..|.+.|+++.|.++-.+.. .|.. ..|.+-..-.-..|++.+|.+++-.+-
T Consensus 785 e~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~----- 851 (1636)
T KOG3616|consen 785 EELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----- 851 (1636)
T ss_pred HHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----
Confidence 77765543 23344566667777777666655442 2322 334333444455666666666553321
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 005512 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY 555 (693)
Q Consensus 476 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 555 (693)
.|+. -|.+|-+.|..++.+++.++..-..-..|-..+..-+...|++..|+..|-++ .-|..-++||
T Consensus 852 ~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmy 918 (1636)
T KOG3616|consen 852 EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMY 918 (1636)
T ss_pred CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHh
Confidence 2332 25666666766666666666521111234444555566666666666655543 2344556667
Q ss_pred HhcCChHHHHHHHHH
Q 005512 556 ASSGKRIEANRIRAL 570 (693)
Q Consensus 556 ~~~g~~~~a~~~~~~ 570 (693)
-..+.|++|.++-+.
T Consensus 919 k~s~lw~dayriakt 933 (1636)
T KOG3616|consen 919 KASELWEDAYRIAKT 933 (1636)
T ss_pred hhhhhHHHHHHHHhc
Confidence 777777776665543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.9e-06 Score=86.86 Aligned_cols=426 Identities=15% Similarity=0.113 Sum_probs=205.9
Q ss_pred CChHHHHHHhcccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 005512 91 GSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA 170 (693)
Q Consensus 91 g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 170 (693)
.++.+|..+|-+-... ..-|..|....+|++|+.+-+.. |.+.-...-.+.++++...|+-+.|-++-.
T Consensus 545 kkfk~ae~ifleqn~t------e~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk~-- 613 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQNAT------EEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELKE-- 613 (1636)
T ss_pred hhhhHHHHHHHhcccH------HHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhcc--
Confidence 3577787777553221 23456666777788888765432 222112223344556666666555544311
Q ss_pred HHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCC--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH
Q 005512 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP--ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI 248 (693)
Q Consensus 171 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 248 (693)
+..-.-+-|..|.+.|.+-.|.+.-..-. ..|......+..++.+..-+++|=.+|+++.. |+..
T Consensus 614 -------sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d----~dka-- 680 (1636)
T KOG3616|consen 614 -------SDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FDKA-- 680 (1636)
T ss_pred -------ccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HHHH--
Confidence 11112345777888888777766543221 23444445555555555555555555554431 1110
Q ss_pred HHHHHhcCCchHHHHHHHHHHHhCCCCchh-HHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHH
Q 005512 249 LNAMACVRKVSEADDVCRVVVDNGLDLDQS-LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327 (693)
Q Consensus 249 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 327 (693)
+..+.+-..+..|.++-+... +..++ .-..-.+-+...|+++.|...|-+... .-.-|.+-.....+.+|
T Consensus 681 le~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~ka 751 (1636)
T KOG3616|consen 681 LECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKA 751 (1636)
T ss_pred HHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhh
Confidence 111111111222222222110 11110 011122233334444444444432210 01122333444455555
Q ss_pred HHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCC
Q 005512 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407 (693)
Q Consensus 328 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~ 407 (693)
+.+++.+.... .-..-|..+..-|+..|+++.|.++|... ..++-.|+||.+.|++++|.++-.+...|
T Consensus 752 i~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~ 820 (1636)
T KOG3616|consen 752 ISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGP 820 (1636)
T ss_pred HhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCc
Confidence 55555544432 12223444445555555555555554322 12234455555555555555555444433
Q ss_pred --CHhHHHHH--------------------------HHHHHhcCChHHHHHHHHHHHhccCCC--hhHHHHHHHHHHhcC
Q 005512 408 --NVISWSTM--------------------------ISGYGMHGHGREALFLFDQMKALIKPD--HITFVSVLSACSHAG 457 (693)
Q Consensus 408 --~~~~~~~l--------------------------i~~~~~~g~~~~A~~~~~~m~~~~~p~--~~t~~~ll~~~~~~g 457 (693)
.+++|-+- |..|-++|..++.+++.++ ..|+ ..|...+..-+-..|
T Consensus 821 e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k----~h~d~l~dt~~~f~~e~e~~g 896 (1636)
T KOG3616|consen 821 EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEK----HHGDHLHDTHKHFAKELEAEG 896 (1636)
T ss_pred hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHH----hChhhhhHHHHHHHHHHHhcc
Confidence 22233333 3344444444444444333 2233 244555566666778
Q ss_pred CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC----CChhhHHHHH------HHHHhcCCH
Q 005512 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR----PDAGVWGSLL------GACRIHSNV 527 (693)
Q Consensus 458 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~ll------~~~~~~g~~ 527 (693)
+++.|...|-+.- -|.+-+++|-.++.+++|.++-+.-+-. .-...|.--+ ...-++|-+
T Consensus 897 ~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll 966 (1636)
T KOG3616|consen 897 DLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLL 966 (1636)
T ss_pred ChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhH
Confidence 8888877665542 2566788888888899888887654211 1123333222 223345555
Q ss_pred HHHHHH-------------HHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 528 ELAEMA-------------AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 528 ~~a~~~-------------~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
+.|+.. .+-..+ ..-+.+..-++..+...|++++|.+-+-+..+.+.
T Consensus 967 ~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 967 EAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred HHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 554432 222221 22345677788888999999999988888776543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-06 Score=87.67 Aligned_cols=216 Identities=12% Similarity=-0.042 Sum_probs=139.9
Q ss_pred CchHHHHHHHHhHHCC-cccC--cchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHH
Q 005512 323 LPLEALEVYRQMILRR-VLPD--SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399 (693)
Q Consensus 323 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 399 (693)
..+.++.-+.+++... ..|+ ...|...-..+...|+.++|...+..+++.. +.+...++.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555321 1111 1234444445556666666666666666643 3456778888889999999999999
Q ss_pred HHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 005512 400 VFDRMKQ--K-NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476 (693)
Q Consensus 400 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 476 (693)
.|++..+ | +...|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|..... ...
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~-~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~ 196 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ-DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLD 196 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCC
Confidence 9998863 3 467888888889999999999999999887 455433222222234456789999999977654 333
Q ss_pred CChhHHHHHHHHHhhcCCHHH--HHHHHHhC-CC----CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 005512 477 PRPEHYACMVDMLGRAGKLNE--AREFIERM-PI----RP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 477 ~~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 545 (693)
|+...+ .++..+ .|++.+ +.+.+.+- .. .| ....|..+...+...|+.++|+..|+++++.+|++.
T Consensus 197 ~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 197 KEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred ccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 433222 333333 444433 33333321 11 12 245788888999999999999999999999998554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.6e-06 Score=85.24 Aligned_cols=353 Identities=15% Similarity=0.116 Sum_probs=210.9
Q ss_pred CCHhHHHHHHH--HHHccCChHHHHHHhcccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CCCC
Q 005512 75 HDLFLVTNLVS--QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL-D--------INPD 143 (693)
Q Consensus 75 ~~~~~~~~li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~--------~~p~ 143 (693)
-|..+-.++++ .|.--|+.+.|.+-.+.++ ....|..|.+.|.+.++.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik---S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK---SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh---hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 35555555554 5677799999988777765 3456999999999998888777666665321 1 1222
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCC-CcchHHHHHHHHHh
Q 005512 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER-NVVTWSSLTGAYAQ 222 (693)
Q Consensus 144 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~ 222 (693)
.+=..+.-.....|.+++|+.++++..+.+ .|=..|-..|.+++|.++-+.-..- =..||.....-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 332333333457789999999999887643 3445677889999999886543221 12356666666666
Q ss_pred cCCchHHHHHHHHHH----------HCCC-----------CCCHHHH-HHHHHhcCCchHHHHHHHHHHHhCCCCchhHH
Q 005512 223 NGCYEEGLLLFKRMM----------DEGI-----------RPNRVVI-LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280 (693)
Q Consensus 223 ~g~~~~A~~~~~~m~----------~~g~-----------~p~~~t~-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 280 (693)
.++.+.|++.|++-. ...+ .|.-..+ ..-+-+.|+.+.|..++..+.. |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 788888888877532 1110 1111111 3334455666666655555443 3
Q ss_pred HHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHH
Q 005512 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360 (693)
Q Consensus 281 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 360 (693)
-+++...|-.|+.++|.++-++- .|......+..-|-..|++.+|...|.+.+ +|...|+.|-..+.-+
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKD 1010 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHH
Confidence 45666666677777777776553 456667778888999999999999998764 4555555553332211
Q ss_pred ---------------HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC--------------CCCHhH
Q 005512 361 ---------------QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK--------------QKNVIS 411 (693)
Q Consensus 361 ---------------~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--------------~~~~~~ 411 (693)
.|-.+|+ +.|.. ..-.+..|-|.|.+.+|+++--+-. ..|+..
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyE---e~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYE---ELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHH---Hcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 1222222 11211 1234556888888888876522211 134555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH---------------------HhccC------CCh----hHHHHHHHHHHhcCCHH
Q 005512 412 WSTMISGYGMHGHGREALFLFDQM---------------------KALIK------PDH----ITFVSVLSACSHAGLID 460 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m---------------------~~~~~------p~~----~t~~~ll~~~~~~g~~~ 460 (693)
.+.-..-++.+.++++|..++-.. -+.+. |+. ..+..+...|.+.|.+.
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh 1162 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYH 1162 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchH
Confidence 554455555666666666555322 11111 232 33566777888888887
Q ss_pred HHHHHHHH
Q 005512 461 EGWECFNS 468 (693)
Q Consensus 461 ~a~~~~~~ 468 (693)
.|-+-|-+
T Consensus 1163 ~AtKKfTQ 1170 (1416)
T KOG3617|consen 1163 AATKKFTQ 1170 (1416)
T ss_pred HHHHHHhh
Confidence 77665544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-05 Score=82.10 Aligned_cols=386 Identities=15% Similarity=0.118 Sum_probs=193.7
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHHHHH
Q 005512 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLL 232 (693)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 232 (693)
..+++..+.+..+.+++. .+....+.....-.+...|+-++|......-.. ++.+.|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 345566666666666652 222223332222234456777777776665443 4667899888888888899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhccc---CCChh
Q 005512 233 FKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL---NKDLV 309 (693)
Q Consensus 233 ~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~ 309 (693)
|+..... .||...+ +.-|.-.-.+.|+++.....-.+.. .....
T Consensus 98 y~nAl~~--~~dN~qi-------------------------------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra 144 (700)
T KOG1156|consen 98 YRNALKI--EKDNLQI-------------------------------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA 144 (700)
T ss_pred HHHHHhc--CCCcHHH-------------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH
Confidence 9988765 4444333 2222222233333333333322222 12345
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhHHCCc-ccCcchhhhHHH------HhhccccHHHHHHHHHHHHHhcCCCchhHHH
Q 005512 310 SWTSMIEAYAQADLPLEALEVYRQMILRRV-LPDSVTFLGVIR------ACSSLASFQQARTVHGIIIHCFLGNQLALDT 382 (693)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~------a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 382 (693)
.|...+.++.-.|+...|..++++..+... .|+...|.-... -....|.++.+.+........ +......-.
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e 223 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhh
Confidence 677777777777777777777777665432 344444332221 223445555555544433221 112222333
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCC--CCHhHHHH-HHHHHHhcCChHHHH-HHHHHHHhcc----CCCh-----------
Q 005512 383 AVVDLYVKCGSLMHARKVFDRMKQ--KNVISWST-MISGYGMHGHGREAL-FLFDQMKALI----KPDH----------- 443 (693)
Q Consensus 383 ~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~~----~p~~----------- 443 (693)
.-.+.+.+.+++++|..++..+.. ||-.-|+- +..++.+-.+.-+++ .+|....+.. .|-.
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel 303 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEEL 303 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchh
Confidence 455677788888888888888774 44444443 334443333333444 5555544321 1100
Q ss_pred -----------------hHHHHHHHHHHhcCCHHHHHHHHHHhHHhh-CC------------CCChhHH--HHHHHHHhh
Q 005512 444 -----------------ITFVSVLSACSHAGLIDEGWECFNSMLRDF-GV------------APRPEHY--ACMVDMLGR 491 (693)
Q Consensus 444 -----------------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~------------~~~~~~~--~~li~~~~~ 491 (693)
.+|..+.+-+-.....+--.++.-.+.... |- +|....| -.++..|-+
T Consensus 304 ~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 111111111111111110011111110000 10 2333222 345566666
Q ss_pred cCCHHHHHHHHHhC-CCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 005512 492 AGKLNEAREFIERM-PIRPDAG-VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569 (693)
Q Consensus 492 ~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 569 (693)
.|+++.|..+++.. .-.|+.+ .|..=...+...|++++|...++++.+++-.|...-.--+.-..++.+.++|.++..
T Consensus 384 ~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLS 463 (700)
T ss_pred cccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHH
Confidence 77777777776655 3334432 222223445566677777777777776665554333334444556667777777766
Q ss_pred HHHhCCC
Q 005512 570 LMKRRGV 576 (693)
Q Consensus 570 ~m~~~~~ 576 (693)
.....|.
T Consensus 464 kFTr~~~ 470 (700)
T KOG1156|consen 464 KFTREGF 470 (700)
T ss_pred Hhhhccc
Confidence 6665543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-07 Score=86.71 Aligned_cols=225 Identities=16% Similarity=0.157 Sum_probs=182.1
Q ss_pred chhHHHHHHHHHHHcCCchhHHHHHhcccC--CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhh-hHHHH
Q 005512 276 DQSLQNAAMVMYARCGRMDMARRFFEGILN--KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL-GVIRA 352 (693)
Q Consensus 276 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a 352 (693)
|-.--+-+...|.+.|.+.+|.+.|+.-.+ +-+.||-.|-..|.+..+++.|+.+|.+-.+. .|-.+||. ...+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 444457788999999999999999987643 56778888999999999999999999987765 56666664 34456
Q ss_pred hhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHH
Q 005512 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREAL 429 (693)
Q Consensus 353 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 429 (693)
+...++.+.+.+++..+.+.. +.++....++...|.-.++++-|+..+.++.+ .+...|+.+.-+|.-.++++-++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 677888999999999998854 44555556667778888999999999998774 67788999988888999999999
Q ss_pred HHHHHHHhc-cCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005512 430 FLFDQMKAL-IKPDH--ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 430 ~~~~~m~~~-~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (693)
.-|++.... -.|+. ..|..+.......|++..|.+.|+.... .-..+.+.++.|.-.-.+.|++++|..++...
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 999999887 55664 4577777777888999999999998875 44556777888888888999999999998876
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00022 Score=72.97 Aligned_cols=187 Identities=13% Similarity=0.135 Sum_probs=96.8
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCCCCCcccHHH--HHHHH--HhCCChhHHHHHHHHHHHCCCCCCc-ccHH
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNV--MIRAF--VDNRQFDRSLQLYAQMRELDINPDK-FTFP 148 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~--li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~ 148 (693)
+.|+...-+-+-+..+.+++++|+++.+.-+.. .+++. +=.+| .+.+..++|+..++- ..++. .+..
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrlnk~Dealk~~~~-----~~~~~~~ll~ 114 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRLNKLDEALKTLKG-----LDRLDDKLLE 114 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHcccHHHHHHHHhc-----ccccchHHHH
Confidence 455555555556667777777777655543321 11122 23333 356777777777762 22222 2333
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCC-ChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHH---HHHHHhcC
Q 005512 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWS-DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL---TGAYAQNG 224 (693)
Q Consensus 149 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g 224 (693)
.-...|-+.+++++|..+++++.+.+.+. +...-..++.. +..-.+. +.+..+.....+|..+ .-.+...|
T Consensus 115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~g 189 (652)
T KOG2376|consen 115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQSVPEVPEDSYELLYNTACILIENG 189 (652)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHHhccCCCcchHHHHHHHHHHHHhcc
Confidence 33445667788888888888887765321 11111112111 1111111 3444444333344433 33556778
Q ss_pred CchHHHHHHHHHHHCC--------CC-----CCHHHH----HHHHHhcCCchHHHHHHHHHHHhCC
Q 005512 225 CYEEGLLLFKRMMDEG--------IR-----PNRVVI----LNAMACVRKVSEADDVCRVVVDNGL 273 (693)
Q Consensus 225 ~~~~A~~~~~~m~~~g--------~~-----p~~~t~----l~~~~~~~~~~~a~~~~~~~~~~g~ 273 (693)
++.+|+++++...+.+ .. .+..+. .-++-..|+-+++.+++..+++...
T Consensus 190 ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 190 KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 8888888887773211 01 000111 3344556777777777777777653
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00014 Score=78.47 Aligned_cols=408 Identities=15% Similarity=0.110 Sum_probs=222.2
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHH----------HHHHHHHHHHhCCC---
Q 005512 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF----------GVKVHKDAVDSGYW--- 176 (693)
Q Consensus 110 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~----------a~~~~~~~~~~g~~--- 176 (693)
+.-+-|..-.-+.++..--+..++.....|. .|..|++++.+.|...++-.+ .+.+=....++++.
T Consensus 839 ~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~ 917 (1666)
T KOG0985|consen 839 FPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLAC 917 (1666)
T ss_pred CChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEE
Confidence 3445556666677777777777888888775 488888888887776554322 11121222222110
Q ss_pred -------CC---------hhhHHHHHHHHHhCCCHHHHHHHhcc-----------C-----CC-CCcchHHHHHHHHHhc
Q 005512 177 -------SD---------VFVGNSLIAMYGKCGRVDVCRQLFDE-----------M-----PE-RNVVTWSSLTGAYAQN 223 (693)
Q Consensus 177 -------~~---------~~~~~~li~~~~~~g~~~~A~~~f~~-----------m-----~~-~~~~~~~~li~~~~~~ 223 (693)
-| ...+-.+.+-+.+..+.+-=.+++.+ . ++ .|...-..-+.++...
T Consensus 918 vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMta 997 (1666)
T KOG0985|consen 918 VAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTA 997 (1666)
T ss_pred EeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhc
Confidence 01 11222223333333333322222211 1 11 3445555667888888
Q ss_pred CCchHHHHHHHHHHHCCCC-CCHHHH-------------------------------HHHHHhcCCchHHHHHHHHHHHh
Q 005512 224 GCYEEGLLLFKRMMDEGIR-PNRVVI-------------------------------LNAMACVRKVSEADDVCRVVVDN 271 (693)
Q Consensus 224 g~~~~A~~~~~~m~~~g~~-p~~~t~-------------------------------l~~~~~~~~~~~a~~~~~~~~~~ 271 (693)
+-+.+-++++++..-..-. .....+ ...+...+-+++|..++...
T Consensus 998 dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf--- 1074 (1666)
T KOG0985|consen 998 DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF--- 1074 (1666)
T ss_pred CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh---
Confidence 8888889988887643211 111111 11112222222232222221
Q ss_pred CCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHH
Q 005512 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351 (693)
Q Consensus 272 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 351 (693)
..+....+.|++ .-+.++.|.+.-++..+ +..|+.+..+-.+.|...+|++-|-+. .|+..|..++.
T Consensus 1075 --~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~ 1141 (1666)
T KOG0985|consen 1075 --DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVID 1141 (1666)
T ss_pred --cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHH
Confidence 222222222222 22445555555555443 457999999999999999999988653 36778999999
Q ss_pred HhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 005512 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431 (693)
Q Consensus 352 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 431 (693)
.+.+.|.+++-..++..+.+..-+|.+ -+.|+-+|+|.+++.+-++.+ ..||+........-|...|.++.|.-+
T Consensus 1142 ~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1142 VASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHH
Confidence 999999999999999888887656554 468999999999998877654 346666666666667777777776666
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCh
Q 005512 432 FDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511 (693)
Q Consensus 432 ~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 511 (693)
|... ..|..+...+.+.|.++.|...-+++ .+..+|...-.++...+.+.-|. +..+.+--..
T Consensus 1217 y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQ--iCGL~iivha 1279 (1666)
T KOG0985|consen 1217 YSNV--------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQ--ICGLNIIVHA 1279 (1666)
T ss_pred HHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHH--hcCceEEEeh
Confidence 6533 23555555555556655555433322 22334444444443333322211 0000111122
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 512 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
.-..-++.-|...|-+++-+.+++..+.++.-..+.|.-|+-.|+
T Consensus 1280 deLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 223334444555555555555555555444444444444444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-06 Score=75.96 Aligned_cols=165 Identities=16% Similarity=0.061 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCCChhHHHHHHHHH
Q 005512 379 ALDTAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSAC 453 (693)
Q Consensus 379 ~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~~~t~~~ll~~~ 453 (693)
.++..+...|.+.|..+.|.+-|++.. ..+-...|....-+|..|++++|...|++.... ..--..||..+.-+.
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 344455555666666666666666554 234445555555566666666666666666554 222345566666666
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHH
Q 005512 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM--PIRPDAGVWGSLLGACRIHSNVELAE 531 (693)
Q Consensus 454 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~ 531 (693)
.+.|+.+.|..+|+..++ -.+-.......+.....+.|++..|..+++.. ...++..+....|..-...||.+.+-
T Consensus 150 l~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~ 227 (250)
T COG3063 150 LKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQ 227 (250)
T ss_pred hhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHH
Confidence 666666666666666654 22223445555666666666666666666655 12244444444445555666666666
Q ss_pred HHHHHHhhcCCCCc
Q 005512 532 MAAKALFDLDAENP 545 (693)
Q Consensus 532 ~~~~~~~~~~p~~~ 545 (693)
+.-.++....|...
T Consensus 228 ~Y~~qL~r~fP~s~ 241 (250)
T COG3063 228 RYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHhCCCcH
Confidence 66666666666543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.9e-05 Score=83.44 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=98.7
Q ss_pred CCHhHH--HHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 005512 407 KNVISW--STMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484 (693)
Q Consensus 407 ~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 484 (693)
|....| .-+...|...|++++|++..++.++.-+.....|..-...+-+.|++++|.+..+.+.+ --.-|...-+.
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK 267 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE--LDLADRYINSK 267 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhHHHHHH
Confidence 344445 44566678899999999999999884433467788889999999999999999999875 33456667777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC---CC--Ch----hhHHH--HHHHHHhcCCHHHHHHHHHHHhh
Q 005512 485 MVDMLGRAGKLNEAREFIERMPI---RP--DA----GVWGS--LLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~---~p--~~----~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
.+..+.|+|+.++|.+++..... .| |. ..|-- ...+|.+.|++..|+..|..+.+
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88889999999999998877632 12 11 13432 34678899999999988887765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-05 Score=74.11 Aligned_cols=317 Identities=14% Similarity=0.114 Sum_probs=153.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHH---HHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCc
Q 005512 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT---GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258 (693)
Q Consensus 182 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~ 258 (693)
.--|...+...|++.+|+.-|....+-|...|-++- ..|...|+..-|+.=|.+.++. +||-..-
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A---------- 108 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA---------- 108 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH----------
Confidence 344555666667777777777776666666665553 3566666666666666665543 4442211
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCC
Q 005512 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338 (693)
Q Consensus 259 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 338 (693)
.---...+.|.|.++.|..=|+.+.+.++.- +....++.+.-..++-..+
T Consensus 109 ---------------------RiQRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l-------- 158 (504)
T KOG0624|consen 109 ---------------------RIQRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVL-------- 158 (504)
T ss_pred ---------------------HHHhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHH--------
Confidence 0011123445566666665555554322110 0001111111111111111
Q ss_pred cccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC---CCCHhHHHHH
Q 005512 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTM 415 (693)
Q Consensus 339 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~l 415 (693)
...+..+...|+...+......+++.. +-|...+..-..+|...|++..|+.-++... ..++...--+
T Consensus 159 --------~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yki 229 (504)
T KOG0624|consen 159 --------VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKI 229 (504)
T ss_pred --------HHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHH
Confidence 111222233455555555555554432 3445555556667777777777766554443 3455555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCH
Q 005512 416 ISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495 (693)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 495 (693)
-..+...|+.+.++...++..+ +.||....... -..+.+..+.++.|.+ ..+.+++
T Consensus 230 s~L~Y~vgd~~~sL~~iRECLK-ldpdHK~Cf~~------YKklkKv~K~les~e~-----------------~ie~~~~ 285 (504)
T KOG0624|consen 230 SQLLYTVGDAENSLKEIRECLK-LDPDHKLCFPF------YKKLKKVVKSLESAEQ-----------------AIEEKHW 285 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHc-cCcchhhHHHH------HHHHHHHHHHHHHHHH-----------------HHhhhhH
Confidence 6666677777777776666655 56664321111 0111222222222221 1223333
Q ss_pred HHHHHHHHhC-CCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 005512 496 NEAREFIERM-PIRPD-----AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569 (693)
Q Consensus 496 ~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 569 (693)
.++++-.+.. ...|. ...+..+-.+++..+++.+|++...++++.+|+|..++.--+.+|.--..+++|+.-|+
T Consensus 286 t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 286 TECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred HHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333333322 22222 11222333444555666666666666666666666666666666666666666666665
Q ss_pred HHHh
Q 005512 570 LMKR 573 (693)
Q Consensus 570 ~m~~ 573 (693)
...+
T Consensus 366 ~A~e 369 (504)
T KOG0624|consen 366 KALE 369 (504)
T ss_pred HHHh
Confidence 5544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-05 Score=79.66 Aligned_cols=293 Identities=10% Similarity=-0.030 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHcCCchhHHHHHhcccC---CChh---hHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcc-hhhh---
Q 005512 279 LQNAAMVMYARCGRMDMARRFFEGILN---KDLV---SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV-TFLG--- 348 (693)
Q Consensus 279 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~--- 348 (693)
.+..+...|...|+.+.+.+.+..... ++.. ........+...|++++|.+.+++..+. .|+.. .+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHH
Confidence 445555666666777776655555421 1211 1222334556778888888888887765 34332 2221
Q ss_pred HHHHhhccccHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCC
Q 005512 349 VIRACSSLASFQQARTVHGIIIHCFLGN-QLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGH 424 (693)
Q Consensus 349 ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 424 (693)
........+..+.+.+.... .....| .......+...+...|++++|...+++..+ .+...+..+...|...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 11111123344444444433 111222 233444566678889999999999988763 345677788888889999
Q ss_pred hHHHHHHHHHHHhccC--CCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHH-H--HHHHHHhhcCCHHH
Q 005512 425 GREALFLFDQMKALIK--PDH--ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY-A--CMVDMLGRAGKLNE 497 (693)
Q Consensus 425 ~~~A~~~~~~m~~~~~--p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g~~~~ 497 (693)
+++|+..+++.....+ |+. ..+..+...+...|++++|..+++.+.......+..... + .++..+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 9999999988877522 332 234567778888999999999998875321111222111 1 23333344443322
Q ss_pred HHHH---HHhC-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---------CchhHHHHHHHHHhcCCh
Q 005512 498 AREF---IERM-PIRPD---AGVWGSLLGACRIHSNVELAEMAAKALFDLDAE---------NPGRYVILSNIYASSGKR 561 (693)
Q Consensus 498 A~~~---~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~ 561 (693)
+.+. .... +..|. .........++...|+.+.|..+++.+....-. ........+.++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1111 11011 122224556677889999999998887653211 234455677788999999
Q ss_pred HHHHHHHHHHHhCC
Q 005512 562 IEANRIRALMKRRG 575 (693)
Q Consensus 562 ~~a~~~~~~m~~~~ 575 (693)
++|.+.+.......
T Consensus 324 ~~A~~~L~~al~~a 337 (355)
T cd05804 324 ATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-07 Score=90.12 Aligned_cols=148 Identities=16% Similarity=0.079 Sum_probs=96.8
Q ss_pred HHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhH---HHHHHHHHhhcCCH
Q 005512 419 YGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH---YACMVDMLGRAGKL 495 (693)
Q Consensus 419 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~ 495 (693)
+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|.+ +..|... ..+.+..+.-.+.+
T Consensus 112 ~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhH
Confidence 34456666666655432 2334445556666677777777777777653 2333221 22333333334468
Q ss_pred HHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 005512 496 NEAREFIERM--PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR-IEANRIRALMK 572 (693)
Q Consensus 496 ~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 572 (693)
.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+.+.+++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8888888887 33456777777888888899999999999999999999988888898888889988 66778888877
Q ss_pred hC
Q 005512 573 RR 574 (693)
Q Consensus 573 ~~ 574 (693)
..
T Consensus 264 ~~ 265 (290)
T PF04733_consen 264 QS 265 (290)
T ss_dssp HH
T ss_pred Hh
Confidence 63
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.0002 Score=77.53 Aligned_cols=161 Identities=12% Similarity=0.058 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcHHHHHHHHHHhccCCC--CCHhHHHHH
Q 005512 6 VTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHH--HDLFLVTNL 83 (693)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~l 83 (693)
+.|..|-..|....+...|-.+|.++...+. -+......+...++...............+-..+ .-..-|-..
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa----tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDA----TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQR 568 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhc
Confidence 4577777888777789999999999876652 2334444455555555544222221221111000 011112223
Q ss_pred HHHHHccCChHHHHHHhcccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHH--HHhccCC
Q 005512 84 VSQYASLGSISHAFSLFSSVSDS--CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLK--ACGYLRD 159 (693)
Q Consensus 84 i~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~--~~~~~~~ 159 (693)
.-.|.+.+....|..-|+...+. .|..+|..+..+|.+.|++..|+++|.+.... .|+. +|...-. .-+..|.
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGK 645 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhh
Confidence 33567778888888888765321 27788889999999999999999999887763 3443 2322222 2345678
Q ss_pred hHHHHHHHHHHHHh
Q 005512 160 IEFGVKVHKDAVDS 173 (693)
Q Consensus 160 ~~~a~~~~~~~~~~ 173 (693)
+.++...++..+..
T Consensus 646 Ykeald~l~~ii~~ 659 (1238)
T KOG1127|consen 646 YKEALDALGLIIYA 659 (1238)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887777653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-05 Score=80.54 Aligned_cols=215 Identities=11% Similarity=0.049 Sum_probs=119.8
Q ss_pred hhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHh----------HHHHHH
Q 005512 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI----------SWSTMI 416 (693)
Q Consensus 347 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~----------~~~~li 416 (693)
..+.++..+..+++.+.+-+...+... .+..-++.....|...|....+...-+...+..-. +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344455555666677777776666654 55555566666677777666655554443322111 112233
Q ss_pred HHHHhcCChHHHHHHHHHHHhc-cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhH-HHHHHHHHhhcCC
Q 005512 417 SGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH-YACMVDMLGRAGK 494 (693)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~ 494 (693)
.+|.+.++++.|+..|.+.... ..||..+ +....+++........ -+.|.... ...-...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 4566667777777777776555 4443322 1112222222222211 12222110 1111445556677
Q ss_pred HHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005512 495 LNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572 (693)
Q Consensus 495 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 572 (693)
+.+|...+.++ ...| |...|..-..+|.+.|++..|+.-.+..++++|+....|..=+.++....+|++|.+.|++..
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777665 3334 456666666667777777777777777777777766666666666666667777777777666
Q ss_pred hCC
Q 005512 573 RRG 575 (693)
Q Consensus 573 ~~~ 575 (693)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.7e-07 Score=89.57 Aligned_cols=216 Identities=13% Similarity=0.046 Sum_probs=153.8
Q ss_pred ccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 005512 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFL 431 (693)
Q Consensus 355 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 431 (693)
+.|++.+|.-.++..++.. +.+...|--|...-...++-..|+..+++..+ .|....-+|.-.|...|.-..|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3445555555555555543 33455555555555556666666666666553 3555666667777788888888888
Q ss_pred HHHHHhccCC---------ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 005512 432 FDQMKALIKP---------DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502 (693)
Q Consensus 432 ~~~m~~~~~p---------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 502 (693)
++.-+..-+| +..+-.. ........+....++|-.+....+..+|+.++.+|.-.|--.|.+++|.+.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7776442100 1100000 1112222344455566666554566688899999999999999999999999
Q ss_pred HhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 503 ERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 503 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
+.. ..+| |...||-|....+...+.++|+..|.+++++.|.-..+...|+-.|...|.++||.+.|-....
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 987 6677 6889999999999999999999999999999999999999999999999999999999987665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-06 Score=84.77 Aligned_cols=154 Identities=15% Similarity=0.136 Sum_probs=96.3
Q ss_pred HHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHH----hcCCHHH
Q 005512 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACS----HAGLIDE 461 (693)
Q Consensus 386 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~----~~g~~~~ 461 (693)
.+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ ...| .+...+..++. ..+.+.+
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-~~eD-~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ-IDED-SILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-CSCC-HHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCc-HHHHHHHHHHHHHHhCchhHHH
Confidence 4455667777777766654 4455555566777777777777777777765 3333 23333333332 2235777
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCH-HHHHHHHHHHh
Q 005512 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNV-ELAEMAAKALF 538 (693)
Q Consensus 462 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~ 538 (693)
|..+|+++.. ...+++.+.+.+.-+....|++++|.+++++. ...| |..++..++-.....|+. +.+.+...++.
T Consensus 186 A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 186 AFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8888888764 45567777777777788888888888877765 3333 455555666666666766 66777888888
Q ss_pred hcCCCCc
Q 005512 539 DLDAENP 545 (693)
Q Consensus 539 ~~~p~~~ 545 (693)
...|+.+
T Consensus 264 ~~~p~h~ 270 (290)
T PF04733_consen 264 QSNPNHP 270 (290)
T ss_dssp HHTTTSH
T ss_pred HhCCCCh
Confidence 8888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.8e-05 Score=76.91 Aligned_cols=416 Identities=15% Similarity=0.128 Sum_probs=221.4
Q ss_pred HHHHccCChHHHHHHhccc--CCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHhccCChH
Q 005512 85 SQYASLGSISHAFSLFSSV--SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD-KFTFPFVLKACGYLRDIE 161 (693)
Q Consensus 85 ~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~ 161 (693)
++....|+++.|...|.+. ..++|.+.|..-..+|+..|++++|++=-.+-++. .|+ .-.|+..-.+....|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 4556789999999999864 33448999999999999999999998877776663 455 456888888888999999
Q ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHH-HHHHhccCCCCCcchHHHHH-----HHHHhcCCchHHHHHHHH
Q 005512 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV-CRQLFDEMPERNVVTWSSLT-----GAYAQNGCYEEGLLLFKR 235 (693)
Q Consensus 162 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~ 235 (693)
+|..-|..-++.. +.|...++.|.+++ ..+. +.+.|. +...|..+. ..+...-.+..-++.++.
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 9999999888875 45677788888887 1111 111111 111222111 111111111111111110
Q ss_pred HHHC-CCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCC-------CC----------------------chhHHHHHHH
Q 005512 236 MMDE-GIRPNRVVILNAMACVRKVSEADDVCRVVVDNGL-------DL----------------------DQSLQNAAMV 285 (693)
Q Consensus 236 m~~~-g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~-------~~----------------------~~~~~~~li~ 285 (693)
-... +...+...+..+...+...+.. .....|. .| -..-...|.+
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred CcHhhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 0000 0000000001111111000000 0000000 00 0001122333
Q ss_pred HHHHcCCchhHHHHHhcccC--CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHH
Q 005512 286 MYARCGRMDMARRFFEGILN--KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363 (693)
Q Consensus 286 ~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 363 (693)
+..+..+++.|.+.++...+ .++.-++....+|...|.+.+....-....+.|.. ...-|+
T Consensus 233 aaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~k---------------- 295 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYK---------------- 295 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHH----------------
Confidence 33344444444444443322 12222333333444444444433333332222110 000000
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 005512 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--KNVISWSTMISGYGMHGHGREALFLFDQMKALIKP 441 (693)
Q Consensus 364 ~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 441 (693)
.+ ......+...|.+.++++.|+..|++... ++... ..+....++++...+...- +.|
T Consensus 296 ----lI--------ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~-~~p 355 (539)
T KOG0548|consen 296 ----LI--------AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY-INP 355 (539)
T ss_pred ----HH--------HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh-hCh
Confidence 00 01112244578888899999999888652 22111 1222334444444433322 555
Q ss_pred ChhH-HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-hhhHHHHH
Q 005512 442 DHIT-FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLL 518 (693)
Q Consensus 442 ~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll 518 (693)
.... .-.-.+.+.+.|++..|...+.++++ ..+.|...|+.-.-+|.+.|.+.+|++-.+.. ...|+ ...|.-=.
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg 433 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKG 433 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 5422 22336677889999999999999987 44667888999999999999999988876655 33343 22333333
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 519 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
.++....+++.|.+.|++.++.+|++......+...+.
T Consensus 434 ~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 434 AALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 44455578999999999999999988765555544444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.4e-05 Score=83.15 Aligned_cols=439 Identities=13% Similarity=0.077 Sum_probs=232.4
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCChhhHHHHHHHH
Q 005512 111 LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY-WSDVFVGNSLIAMY 189 (693)
Q Consensus 111 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~ 189 (693)
.|..|...|...-+...|...|+...+.+ ..|..........+++..+++.|..+.-..-+... ..-...|--+.-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 46666666666666667777777666543 23445566666667777777777666222211110 00011122233345
Q ss_pred HhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH--HH--HHHHHhcCCchHHH
Q 005512 190 GKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV--VI--LNAMACVRKVSEAD 262 (693)
Q Consensus 190 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~--l~~~~~~~~~~~a~ 262 (693)
.+.++..+|..-|+.... .|...|..+..+|.+.|++..|+++|.+.... .|+.. .| ...-+..|.+.++.
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 566666666666665543 46677888888888888888888888776654 44432 33 34445667777777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHH-------cCCchhHHHHHhcccC-----------CChhhHHHHHHHHHHcCCc
Q 005512 263 DVCRVVVDNGLDLDQSLQNAAMVMYAR-------CGRMDMARRFFEGILN-----------KDLVSWTSMIEAYAQADLP 324 (693)
Q Consensus 263 ~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~ 324 (693)
..++.++... .......+.|...+.+ .|-..+|...|++-.+ .+...|-.+
T Consensus 651 d~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a---------- 719 (1238)
T KOG1127|consen 651 DALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA---------- 719 (1238)
T ss_pred HHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------
Confidence 7777766532 1111122233333332 2333333344333211 122223222
Q ss_pred hHHHHHHHHhHHCCcccCcchhhhHHHHhhccccH---H---HHHHHHHHHHHhcCCCchhHHHHHHHHHHh----hC--
Q 005512 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF---Q---QARTVHGIIIHCFLGNQLALDTAVVDLYVK----CG-- 392 (693)
Q Consensus 325 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~---~a~~i~~~~~~~~~~~~~~~~~~li~~y~k----~g-- 392 (693)
..|..+|.+.. .. .|+......+..-....+.. + .|.+.+- ....+..+...+..|+.-|.+ +|
T Consensus 720 sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~--~hlsl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 720 SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGI--AHLSLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhh--HHHHHhhccchHHHHhHHHHHHHHHcCCc
Confidence 22333343332 11 22222211111112222221 1 1111111 111111223333333333322 22
Q ss_pred --CHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005512 393 --SLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFN 467 (693)
Q Consensus 393 --~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 467 (693)
+...|...+.... ..+...||+|.-. ...|++.-|.-.|-+-....+.+..+|..+.-.|....+++.|...|.
T Consensus 796 ~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred chhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHH
Confidence 2235566666554 4677888887655 555666666666655544355567788888888888888888888888
Q ss_pred HhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCChhhHHHHHHHHHhcCCHHHHHHH------
Q 005512 468 SMLRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERM-------PIRPDAGVWGSLLGACRIHSNVELAEMA------ 533 (693)
Q Consensus 468 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~------ 533 (693)
... .+.| +...|--..-.....|+.-++..+|..- +--|+..-|.....--..+|+.++-+..
T Consensus 875 ~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 875 SVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred hhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 775 3444 4444544444455667777777777542 2235555555554445556665554433
Q ss_pred ----HHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005512 534 ----AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 534 ----~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 571 (693)
.++.+.-.|++..+|...+...-+.+.+.+|.+...+.
T Consensus 952 As~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 952 ASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44445567888888888888888888888777766654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.4e-06 Score=92.69 Aligned_cols=200 Identities=14% Similarity=0.154 Sum_probs=167.2
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHH
Q 005512 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--------KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITF 446 (693)
Q Consensus 375 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~ 446 (693)
+.+...|-..|......+++++|+++++++.. .-...|.++++.-...|.-+...++|++..+ .-.....|
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq-ycd~~~V~ 1533 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ-YCDAYTVH 1533 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH-hcchHHHH
Confidence 44556677777888889999999999998863 1345899999888888988899999999877 33334568
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCChhhHHHHHHHHH
Q 005512 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM----PIRPDAGVWGSLLGACR 522 (693)
Q Consensus 447 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~ 522 (693)
..|...|.+.+..++|-++++.|.++++ -...+|..+++.+.+..+-++|..++.+. |-+.......-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8999999999999999999999999766 66778999999999999999999999876 32223444555556667
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 005512 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577 (693)
Q Consensus 523 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 577 (693)
++|+.+++..+|+..+...|.....|+.++++-.+.|..+.++.+|++....++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999998899999999999999999999999999988764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.5e-05 Score=87.71 Aligned_cols=323 Identities=11% Similarity=0.029 Sum_probs=200.0
Q ss_pred HhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC----CC---h---h--hHHHHHHHHHH
Q 005512 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN----KD---L---V--SWTSMIEAYAQ 320 (693)
Q Consensus 253 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~---~---~--~~~~li~~~~~ 320 (693)
...|+.+.....+..+.......+..........+...|++++|...++.... .+ . . ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34455555555554432111122233334455566778899998888775421 11 1 1 11222344567
Q ss_pred cCCchHHHHHHHHhHHCCcccCc----chhhhHHHHhhccccHHHHHHHHHHHHHhcC---CC--chhHHHHHHHHHHhh
Q 005512 321 ADLPLEALEVYRQMILRRVLPDS----VTFLGVIRACSSLASFQQARTVHGIIIHCFL---GN--QLALDTAVVDLYVKC 391 (693)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~---~~--~~~~~~~li~~y~k~ 391 (693)
.|++++|...+++....-...+. .....+...+...|+++.|...+.......- .+ .......+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999887653111111 1223344455678999999988887765211 11 123445566778889
Q ss_pred CCHHHHHHHHHhcCC-------CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhc---cCCC--hhHHHHHHHHHHh
Q 005512 392 GSLMHARKVFDRMKQ-------KN----VISWSTMISGYGMHGHGREALFLFDQMKAL---IKPD--HITFVSVLSACSH 455 (693)
Q Consensus 392 g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~p~--~~t~~~ll~~~~~ 455 (693)
|++++|...+++... ++ ...+..+...+...|++++|...+++.... ..+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999998876542 11 223444556677789999999999987654 2222 2334455667788
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCh----hhHHHHHHHHHhc
Q 005512 456 AGLIDEGWECFNSMLRDFGVAPRPEHY-----ACMVDMLGRAGKLNEAREFIERMPIR--PDA----GVWGSLLGACRIH 524 (693)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~ 524 (693)
.|+.++|.+.++.+..-.........+ ...+..+...|+.++|.+.+...... ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999988875421111111111 11224456689999999998776311 111 1134455678888
Q ss_pred CCHHHHHHHHHHHhhcCC------CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 525 SNVELAEMAAKALFDLDA------ENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 525 g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
|+.++|...++++++... ....++..++.+|.+.|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999886521 123456788899999999999999999988743
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.1e-08 Score=60.29 Aligned_cols=34 Identities=50% Similarity=0.635 Sum_probs=28.6
Q ss_pred hCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCC
Q 005512 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206 (693)
Q Consensus 173 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 206 (693)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888874
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.7e-06 Score=79.86 Aligned_cols=179 Identities=13% Similarity=0.037 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhcCC--CC-H---hHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChh---HHHH
Q 005512 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQ--KN-V---ISWSTMISGYGMHGHGREALFLFDQMKALIKPDHI---TFVS 448 (693)
Q Consensus 378 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~---t~~~ 448 (693)
...+-.+...|.+.|++++|...|+++.. |+ . ..|..+..+|.+.|++++|+..++++.+..+.+.. ++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 44555566666777777777777776652 22 1 35566666777777777777777777663221221 3444
Q ss_pred HHHHHHhc--------CCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHH
Q 005512 449 VLSACSHA--------GLIDEGWECFNSMLRDFGVAPR-PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519 (693)
Q Consensus 449 ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 519 (693)
+..++... |+.++|.+.++.+.+. .|+ ...+..+... +...... . .....+..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~---~--------~~~~~~a~ 174 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL---A--------GKELYVAR 174 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH---H--------HHHHHHHH
Confidence 44445443 5566667776666542 222 1122111111 0000000 0 00123455
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 520 ACRIHSNVELAEMAAKALFDLDAEN---PGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 520 ~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
.+...|++++|+..++++++..|++ +..+..++.+|.+.|++++|...++.+..+
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6788899999999999999987764 468889999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-05 Score=72.18 Aligned_cols=307 Identities=15% Similarity=0.079 Sum_probs=167.8
Q ss_pred HHHHHHHHccCChHHHHHHhcccCCC-C-CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHH-HHHHhcc
Q 005512 81 TNLVSQYASLGSISHAFSLFSSVSDS-C-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFV-LKACGYL 157 (693)
Q Consensus 81 ~~li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~ 157 (693)
++.+.-..+-.++++|.+++..-.++ | +....+.|..+|-...++..|-+.|+++-.. .|...-|... ...+-+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 34444456777888888888766444 2 4556677778888888888888888888764 3555444332 2334456
Q ss_pred CChHHHHHHHHHHHHhCCCCChhhHHHHH--HHHHhCCCHHHHHHHhccCCC-CCcchHHHHHHHHHhcCCchHHHHHHH
Q 005512 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLI--AMYGKCGRVDVCRQLFDEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFK 234 (693)
Q Consensus 158 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 234 (693)
+.+..|.++...|... ++...-..-+ ...-..+++..++.+.++.+. .+..+-+...-...+.|+++.|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 6777788777766432 1211111111 122346788888888888874 455555555555667888888888888
Q ss_pred HHHHC-CCCCCHHHH--HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCC-----
Q 005512 235 RMMDE-GIRPNRVVI--LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK----- 306 (693)
Q Consensus 235 ~m~~~-g~~p~~~t~--l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----- 306 (693)
...+- |..|- ..| .-+.-+.++...|.+...+++.+|+...+...- |..-+..+ .+.+..+
T Consensus 169 aAlqvsGyqpl-lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgI---------Gm~tegiD-vrsvgNt~~lh~ 237 (459)
T KOG4340|consen 169 AALQVSGYQPL-LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGI---------GMTTEGID-VRSVGNTLVLHQ 237 (459)
T ss_pred HHHhhcCCCch-hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc---------cceeccCc-hhcccchHHHHH
Confidence 87765 44443 333 344456778888888888888877543222110 00000000 0000000
Q ss_pred --ChhhHHHHHHHHHHcCCchHHHHHHHHhHHC-CcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHH
Q 005512 307 --DLVSWTSMIEAYAQADLPLEALEVYRQMILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383 (693)
Q Consensus 307 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 383 (693)
=+..+|.-...+.+.++++.|.+.+-.|.-. .-..|++|...+.-.- -.+++..+..-+..+..... ....++..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 0112333333445556666666665555321 1223445544332211 12233344444444444322 23345555
Q ss_pred HHHHHHhhCCHHHHHHHHHhcC
Q 005512 384 VVDLYVKCGSLMHARKVFDRMK 405 (693)
Q Consensus 384 li~~y~k~g~~~~A~~~~~~~~ 405 (693)
++-.|||..-++-|.+++.+-.
T Consensus 316 lLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCc
Confidence 6666777777777777665544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00061 Score=80.08 Aligned_cols=192 Identities=10% Similarity=0.042 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCchhHHHHHhcccC-------CC----hhhHHHHHHHHHHcCCchHHHHHHHHhHHCC--cccC--cc
Q 005512 280 QNAAMVMYARCGRMDMARRFFEGILN-------KD----LVSWTSMIEAYAQADLPLEALEVYRQMILRR--VLPD--SV 344 (693)
Q Consensus 280 ~~~li~~y~~~g~~~~A~~~f~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~ 344 (693)
...+...+...|++++|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ..
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 34455566667777777666655421 01 1123344445566677777777776654321 1111 11
Q ss_pred hhhhHHHHhhccccHHHHHHHHHHHHHhcCCCc-hh-----HHHHHHHHHHhhCCHHHHHHHHHhcCCCCH-------hH
Q 005512 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ-LA-----LDTAVVDLYVKCGSLMHARKVFDRMKQKNV-------IS 411 (693)
Q Consensus 345 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~-~~-----~~~~li~~y~k~g~~~~A~~~~~~~~~~~~-------~~ 411 (693)
.+..+.......|+.+.|...+..+....-... .. .....+..+...|+.+.|...+.....+.. ..
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 222233344456666666666655543211000 00 001112334456777777777766543211 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc---c--CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 005512 412 WSTMISGYGMHGHGREALFLFDQMKAL---I--KPD-HITFVSVLSACSHAGLIDEGWECFNSMLR 471 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~--~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 471 (693)
+..+..++...|++++|...+++.... . .++ ..+...+..++...|+.++|...+.++.+
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234555666777777777777776543 1 111 23445555566677777777777776665
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00078 Score=68.35 Aligned_cols=157 Identities=13% Similarity=0.147 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 005512 410 ISWSTMISGYGMHGHGREALFLFDQMKAL-IKP-DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487 (693)
Q Consensus 410 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 487 (693)
.+|-..+..-.+..-.+.|..+|.+..+. ..+ +....++++.-++ +++..-|.++|+.-.+.+| -++.--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 34555555555555666677777777665 444 4455555555444 4566677777776665333 23334456666
Q ss_pred HHhhcCCHHHHHHHHHhC-C--CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----chhHHHHHHHHHhc
Q 005512 488 MLGRAGKLNEAREFIERM-P--IRPD--AGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN----PGRYVILSNIYASS 558 (693)
Q Consensus 488 ~~~~~g~~~~A~~~~~~m-~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 558 (693)
-+...++-..|..+|++. + +.|| ..+|..+|.--..-|++..+.++-++....-|.+ ...-..+++.|.=.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 677777777777777766 1 2222 4567777776666777777777766665544411 01223455566555
Q ss_pred CChHHHHHHHH
Q 005512 559 GKRIEANRIRA 569 (693)
Q Consensus 559 g~~~~a~~~~~ 569 (693)
+.+..-..-++
T Consensus 524 d~~~c~~~elk 534 (656)
T KOG1914|consen 524 DLYPCSLDELK 534 (656)
T ss_pred ccccccHHHHH
Confidence 55544333333
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00025 Score=73.33 Aligned_cols=91 Identities=13% Similarity=0.046 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcC-CCch--hHHHHHHHHHH
Q 005512 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL-GNQL--ALDTAVVDLYV 389 (693)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-~~~~--~~~~~li~~y~ 389 (693)
.+...+...|++++|.+.+++..+.. +.+...+..+-..+...|++++|...+....+... .++. ..+..+...|.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 33445566666666666666666542 11222333333444444555555544444443211 1111 12223444444
Q ss_pred hhCCHHHHHHHHHhc
Q 005512 390 KCGSLMHARKVFDRM 404 (693)
Q Consensus 390 k~g~~~~A~~~~~~~ 404 (693)
..|++++|..+|++.
T Consensus 198 ~~G~~~~A~~~~~~~ 212 (355)
T cd05804 198 ERGDYEAALAIYDTH 212 (355)
T ss_pred HCCCHHHHHHHHHHH
Confidence 555555555555443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.0014 Score=66.65 Aligned_cols=131 Identities=11% Similarity=0.110 Sum_probs=86.0
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCCC-C-CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS-C-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 151 (693)
|.|+..|+.||+-+... .++++++.++++-.. | ....|..-|..-.+..+++....+|.+.+..-. +...|...|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 77899999999887766 899999999988443 2 556799999999999999999999999876433 445555555
Q ss_pred HHHhcc-CChHH----HHHHHHHHH-HhCCCCCh-hhHHHHHHHHH---------hCCCHHHHHHHhccCCC
Q 005512 152 KACGYL-RDIEF----GVKVHKDAV-DSGYWSDV-FVGNSLIAMYG---------KCGRVDVCRQLFDEMPE 207 (693)
Q Consensus 152 ~~~~~~-~~~~~----a~~~~~~~~-~~g~~~~~-~~~~~li~~~~---------~~g~~~~A~~~f~~m~~ 207 (693)
.--.+. ++... -.+.|+..+ +.|+++-. ..|+..+..+- ...+++..++++.++..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 433222 22222 233344433 34544333 35666666542 33456677888888765
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-05 Score=74.52 Aligned_cols=118 Identities=10% Similarity=0.084 Sum_probs=90.5
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHH-HHhcCC--HHHH
Q 005512 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGA-CRIHSN--VELA 530 (693)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~--~~~a 530 (693)
.++.+++...++...+ .-+.+...|..|...|...|++++|.+.|++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4556666666666664 44556777888888888888888888888776 4445 46666666665 356666 5889
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 531 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
.++++++++.+|+++.++..|+..+.+.|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999998899999999999999999999999987754
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.6e-06 Score=73.00 Aligned_cols=109 Identities=9% Similarity=-0.068 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHh
Q 005512 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRI 523 (693)
Q Consensus 446 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 523 (693)
+.....++...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|++. ...| +...|..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 33455566666777777777666653 23335566666666677777777777777665 3334 45666666666777
Q ss_pred cCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 524 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
.|+.++|+..++++++..|+++..+.....+..
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 777777777777777777777766665555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.8e-05 Score=74.24 Aligned_cols=184 Identities=11% Similarity=0.069 Sum_probs=124.9
Q ss_pred HHHhhC-CHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCCh--HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHH
Q 005512 387 LYVKCG-SLMHARKVFDRMK---QKNVISWSTMISGYGMHGHG--REALFLFDQMKALIKPDHITFVSVLSACSHAGLID 460 (693)
Q Consensus 387 ~y~k~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~ 460 (693)
++.+.| .+++++..++++. .++...|+.....+.+.|+. ++++.+++++.+.-+-|..+|.....++.+.|+++
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ 159 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWE 159 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHH
Confidence 334445 4677777777665 24555676555455555543 56777777777644446677777777778888888
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc---CCH----HHHHHHHHhC-CCCC-ChhhHHHHHHHHHhc----CCH
Q 005512 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRA---GKL----NEAREFIERM-PIRP-DAGVWGSLLGACRIH----SNV 527 (693)
Q Consensus 461 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~----~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~ 527 (693)
++++.++.+++ .-..+...|+.....+.+. |.. +++.++..++ ...| |...|+.+.+.+... ++.
T Consensus 160 eeL~~~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~ 237 (320)
T PLN02789 160 DELEYCHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSD 237 (320)
T ss_pred HHHHHHHHHHH--HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccc
Confidence 88888888876 2334555666555555443 222 4566666443 4455 678899988888773 345
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC------------------ChHHHHHHHHHHH
Q 005512 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSG------------------KRIEANRIRALMK 572 (693)
Q Consensus 528 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 572 (693)
.+|...+.++.+.+|+++.+...|+++|+... ..++|.++++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 238 PEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 67889999999999999999999999998743 2367888888874
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-05 Score=78.70 Aligned_cols=226 Identities=12% Similarity=0.101 Sum_probs=172.0
Q ss_pred CCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHHHH
Q 005512 242 RPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAY 318 (693)
Q Consensus 242 ~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 318 (693)
.||++.-..-+.+.|++.+|.-.++..++.. +.+...|.-|.......++-..|+..+.+..+ .|....-+|...|
T Consensus 285 ~pdPf~eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred CCChHHHHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 4555554555667788999999999988876 55778888898889999988889999888755 3566777888889
Q ss_pred HHcCCchHHHHHHHHhHHCCcc--------cCcchhhhHHHHhhccccHHHHHHHHHHHH-HhcCCCchhHHHHHHHHHH
Q 005512 319 AQADLPLEALEVYRQMILRRVL--------PDSVTFLGVIRACSSLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYV 389 (693)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~-~~~~~~~~~~~~~li~~y~ 389 (693)
...|.-.+|+..|+.-+....+ ++...-.. ........+....++|-.+. ..+...|..+...|.-.|-
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh
Confidence 9999999999999887654211 01110000 12223334445555555544 4555688889999999999
Q ss_pred hhCCHHHHHHHHHhcC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCh-hHHHHHHHHHHhcCCHHHHHHH
Q 005512 390 KCGSLMHARKVFDRMK--Q-KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDH-ITFVSVLSACSHAGLIDEGWEC 465 (693)
Q Consensus 390 k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~ 465 (693)
-.|+++.|.+.|+.+. + .|...||-|...++...+.++|+..|++..+ ++|+- .....|.-+|...|.+++|.+.
T Consensus 442 ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq-LqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ-LQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh-cCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 9999999999999987 3 4778999999999999999999999999988 88874 5566777789999999999998
Q ss_pred HHHhHH
Q 005512 466 FNSMLR 471 (693)
Q Consensus 466 ~~~~~~ 471 (693)
|-.++.
T Consensus 521 lL~AL~ 526 (579)
T KOG1125|consen 521 LLEALS 526 (579)
T ss_pred HHHHHH
Confidence 877653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.9e-07 Score=57.25 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=23.5
Q ss_pred cCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC
Q 005512 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405 (693)
Q Consensus 373 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 405 (693)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00073 Score=71.66 Aligned_cols=259 Identities=12% Similarity=0.128 Sum_probs=154.0
Q ss_pred CcccHHHHHH--HHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHh-C--------CC
Q 005512 108 DLFLWNVMIR--AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS-G--------YW 176 (693)
Q Consensus 108 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g--------~~ 176 (693)
|..+-.+++. -|..-|+.+.|.+-.+.+. +...|..+.+.|.+.++++-|+-.+.+|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 6667777763 4667788888877666554 3456888888888888888777766666432 1 01
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcC
Q 005512 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256 (693)
Q Consensus 177 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~ 256 (693)
++ ..-....-.-...|.+++|..+|.+.+. |..|=..|-..|.+++|+++-+.=-+..++...+.+..-+...+
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 11 1112222233466888888888887754 34444566677888888887664333333333333455555556
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHH
Q 005512 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336 (693)
Q Consensus 257 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (693)
+.+.|.+.++.. |. +--.+...|. .++..-....+++.++.. |.=...-+-..|+.+.|+.+|.....
T Consensus 873 Di~~AleyyEK~---~~-hafev~rmL~------e~p~~~e~Yv~~~~d~~L--~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 873 DIEAALEYYEKA---GV-HAFEVFRMLK------EYPKQIEQYVRRKRDESL--YSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred cHHHHHHHHHhc---CC-hHHHHHHHHH------hChHHHHHHHHhccchHH--HHHHHHHHhcccchHHHHHHHHHhhh
Confidence 666665555432 11 1111111111 122222333344444433 33344445567888888888887654
Q ss_pred CCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC
Q 005512 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405 (693)
Q Consensus 337 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 405 (693)
|-++++..+-.|..++|-+|-++ ..|...+--|..+|...|++.+|...|.+..
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34455556667888888777654 3455666678888888888888888887764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3e-05 Score=71.77 Aligned_cols=154 Identities=13% Similarity=0.149 Sum_probs=116.8
Q ss_pred HHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHH
Q 005512 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464 (693)
Q Consensus 385 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 464 (693)
+-+|.+.|+++......+.+..+. ..|...++.++++..+++..+.-+.|...|..+...+...|++++|..
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456888888877655544433221 012235667788888877777566678889999999999999999999
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHH-HhhcCC--HHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005512 465 CFNSMLRDFGVAPRPEHYACMVDM-LGRAGK--LNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
.++...+ -.+.+...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++++
T Consensus 95 a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 95 AYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999875 334467788888886 467777 59999999988 4455 567777888889999999999999999999
Q ss_pred cCCCCchhH
Q 005512 540 LDAENPGRY 548 (693)
Q Consensus 540 ~~p~~~~~~ 548 (693)
+.|++..-+
T Consensus 173 l~~~~~~r~ 181 (198)
T PRK10370 173 LNSPRVNRT 181 (198)
T ss_pred hCCCCccHH
Confidence 998776544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.9e-06 Score=71.51 Aligned_cols=107 Identities=14% Similarity=0.023 Sum_probs=91.4
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 005512 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541 (693)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 541 (693)
.+++..+ .+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|+..|+++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444444 23444 4556788899999999999999987 4445 68888999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 542 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
|+++..+..++.++...|+.++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999988754
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.6e-05 Score=83.07 Aligned_cols=189 Identities=21% Similarity=0.234 Sum_probs=125.3
Q ss_pred cCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHH
Q 005512 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSA 452 (693)
Q Consensus 373 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~ 452 (693)
+++|-...-..+.+.+.++|-...|..+|++. ..|.-.|.+|+..|+..+|..+..+-.+ -+||+.-|..+++.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 45566666677888888999999999998875 4677788888888988888888877766 67888888888888
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHH
Q 005512 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELA 530 (693)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 530 (693)
.....-+++|+++++....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++...|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 77777777787777665431 1111122223356666666666543 3333 345555555555566666666
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 531 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
.+.|..-..++|++...|+++..+|.+.|+..+|...+++..+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 666666666666666666666666666666666666666655544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0012 Score=63.15 Aligned_cols=172 Identities=13% Similarity=0.053 Sum_probs=99.7
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh-hhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHH---HHH
Q 005512 145 FTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV-FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT---GAY 220 (693)
Q Consensus 145 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~ 220 (693)
.----+-+.+...|++..|..-+..+++.+ |+. .++-.-...|...|+-..|+.=|+++.+.-..-+.+-| ..+
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 334455566677788888888777776543 332 23333456788888888888777777652222222222 356
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHH
Q 005512 221 AQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300 (693)
Q Consensus 221 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 300 (693)
.+.|.+++|..=|+..++.. |+..+-..+..++...++-. .....+..+.-.|+...|+...
T Consensus 117 lK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHHH
Confidence 78899999999999888763 33322222222221111111 1122333444556777777666
Q ss_pred hcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHH
Q 005512 301 EGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336 (693)
Q Consensus 301 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (693)
..+.+ -|...+..-..+|...|.+..|+.-++..-+
T Consensus 179 ~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask 217 (504)
T KOG0624|consen 179 THLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASK 217 (504)
T ss_pred HHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 66543 2555566666777777777777666555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00027 Score=71.06 Aligned_cols=120 Identities=23% Similarity=0.201 Sum_probs=87.0
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHH
Q 005512 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVEL 529 (693)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 529 (693)
.....|.+++|+..++.+++ ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+-++..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34456777888888887775 44455666666777888888888888888777 45565 5666677777888888888
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 530 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
|+..++.....+|+|+..|..|+.+|...|+..+|...+.++-.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 88888888888888888888888777777777666666655443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.6e-05 Score=83.67 Aligned_cols=141 Identities=12% Similarity=0.120 Sum_probs=114.0
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 005512 407 KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPD-HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485 (693)
Q Consensus 407 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 485 (693)
.++..+-.|.....+.|+.++|+.+++...+ +.|| ......+..++.+.+.+++|....+.... .-+-+......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~-~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ-RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 3577788888888899999999999999888 5665 56677888899999999999999998875 444566777888
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHH
Q 005512 486 VDMLGRAGKLNEAREFIERMP-IRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550 (693)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 550 (693)
...+.+.|++++|.++|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+....|+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 889999999999999999882 3343 7788888889999999999999999999877655445443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-05 Score=68.58 Aligned_cols=118 Identities=11% Similarity=0.092 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 479 PEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
....-.+...+...|++++|.++|+-. ...| +..-|-.|...|...|++++|+..|.++..++|+++.++..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334445566677899999999999887 3445 67788889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 005512 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIR 619 (693)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 619 (693)
..|+.+.|++.|+...... + .+|+..++.+++...+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhh
Confidence 9999999999999887641 1 35677777666776666554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.5e-05 Score=68.29 Aligned_cols=117 Identities=17% Similarity=0.135 Sum_probs=53.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCC
Q 005512 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSN 526 (693)
Q Consensus 449 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 526 (693)
.+....+.|++.+|...+.+... .-++|...|+.+.-+|.+.|++++|..-|.+. .+.| ++...+.+...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444444444444444444432 33344444444444444444444444444333 2222 23344444444444555
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 005512 527 VELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567 (693)
Q Consensus 527 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 567 (693)
.+.|+.++.......+.++.+-..|+-.....|++++|..+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555444444444444555555555555555443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.2e-05 Score=82.03 Aligned_cols=216 Identities=15% Similarity=0.135 Sum_probs=154.7
Q ss_pred CCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHH
Q 005512 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352 (693)
Q Consensus 273 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 352 (693)
++|-...-..+.+.+.++|-...|..+|+++ ..|.-.|.+|+..|+..+|..+..+-.+ -+||...|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4555566677888999999999999999885 4688889999999999999998888776 37788888887777
Q ss_pred hhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHH
Q 005512 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREAL 429 (693)
Q Consensus 353 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 429 (693)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ --..+|-....+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 76666677777776654332 111111112235778888887776543 23457777777777788888888
Q ss_pred HHHHHHHhccCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005512 430 FLFDQMKALIKPD-HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 430 ~~~~~m~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (693)
+.|..-.. ..|| ...|+.+-.++.+.++-.+|...++++.+ +. ..+...|...+-...+.|.+++|.+.+.++
T Consensus 540 ~aF~rcvt-L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT-LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh-cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 88877766 5554 45688888888888888888888888776 34 444555666666667778888887777766
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.8e-05 Score=72.33 Aligned_cols=181 Identities=14% Similarity=0.054 Sum_probs=123.5
Q ss_pred CcchhhhHHHHhhccccHHHHHHHHHHHHHhcCC-C-chhHHHHHHHHHHhhCCHHHHHHHHHhcCC--CC-Hh---HHH
Q 005512 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG-N-QLALDTAVVDLYVKCGSLMHARKVFDRMKQ--KN-VI---SWS 413 (693)
Q Consensus 342 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-~-~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~---~~~ 413 (693)
....+......+...|+++.|...+..+++.... + ....+..+...|.+.|++++|...|+++.+ |+ .. .|.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445666667788999999999999999875422 1 124667788999999999999999999863 32 22 455
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHhccCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 005512 414 TMISGYGMH--------GHGREALFLFDQMKALIKPDH-ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484 (693)
Q Consensus 414 ~li~~~~~~--------g~~~~A~~~~~~m~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 484 (693)
.+..++.+. |+.++|.+.|+++... .|+. .....+..... .. ... . .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~a~~~~~~----~~------~~~-~--------~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-YPNSEYAPDAKKRMDY----LR------NRL-A--------GKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-CCCChhHHHHHHHHHH----HH------HHH-H--------HHHHH
Confidence 566666654 7889999999999874 4443 23222211110 00 000 0 11224
Q ss_pred HHHHHhhcCCHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 005512 485 MVDMLGRAGKLNEAREFIERM----PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542 (693)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 542 (693)
+.+.|.+.|++++|...+++. |..| ....|..+..++...|+.++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 667788899999999988876 2223 346788888899999999999998887766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00026 Score=79.24 Aligned_cols=196 Identities=13% Similarity=0.180 Sum_probs=141.1
Q ss_pred chhhhHHHHhhccccHHHHHHHHHHHHHh-cCC---CchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--CCHhHHHHHHH
Q 005512 344 VTFLGVIRACSSLASFQQARTVHGIIIHC-FLG---NQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--KNVISWSTMIS 417 (693)
Q Consensus 344 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~---~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~ 417 (693)
..|..-+.-....++.+.|+.+..++++. ++. --..+|.+++++-..-|.-+...++|+++.+ .....|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34444555555666677777776666652 111 1245677777777777777888888888874 23456778888
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC--ChhHHHHHHHHHhhcCCH
Q 005512 418 GYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP--RPEHYACMVDMLGRAGKL 495 (693)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~ 495 (693)
.|.+.+..++|.++|+.|.+.+.-....|...+..+.+..+-+.|..++.++.+ -++. ........+.+-.+.|+.
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhhcCCc
Confidence 888888888888888888887555667788888888888888888888888875 3332 344556667777788888
Q ss_pred HHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 005512 496 NEAREFIERM--PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541 (693)
Q Consensus 496 ~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 541 (693)
+.++.+|+.. ........|+.++..-.++|+.+.++.+|++++.+.
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 8888888876 222256788888888888888888888888888765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.1e-05 Score=69.54 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=114.7
Q ss_pred cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCChhhHHH
Q 005512 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM--PIRPDAGVWGS 516 (693)
Q Consensus 439 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ 516 (693)
..|+......+-.++...|+-+....+...... ..+.+......++....+.|++.+|...|.+. +..+|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 344332226666778888888888888777653 45556677777999999999999999999998 34568999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 517 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
+..+|-+.|++++|...|.+++++.|+++.+++.|+-.|.-.|+.+.|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999998876543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.2e-06 Score=52.93 Aligned_cols=35 Identities=26% Similarity=0.533 Sum_probs=32.0
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc
Q 005512 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDK 144 (693)
Q Consensus 110 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 144 (693)
++||++|++|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00051 Score=68.49 Aligned_cols=186 Identities=9% Similarity=0.024 Sum_probs=138.0
Q ss_pred HHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC--HHH
Q 005512 388 YVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHG-HGREALFLFDQMKALIKPDHITFVSVLSACSHAGL--IDE 461 (693)
Q Consensus 388 y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~--~~~ 461 (693)
+.+.++.++|..+.+++.. .+...|+.-...+...| +.++++..++++.+.-+.+..+|......+.+.|. .++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 4456788889988888774 34556776666666777 67999999999988544555667665555666665 367
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhc---CC----HHHHHH
Q 005512 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIH---SN----VELAEM 532 (693)
Q Consensus 462 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~----~~~a~~ 532 (693)
+..+++.+++ .-+.+...|+....++.+.|++++|++.++++ ...| |...|+.....+... |. .++++.
T Consensus 127 el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 7888888875 44557788888889999999999999999998 3333 677888776655443 22 356778
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhc----CChHHHHHHHHHHHhCC
Q 005512 533 AAKALFDLDAENPGRYVILSNIYASS----GKRIEANRIRALMKRRG 575 (693)
Q Consensus 533 ~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~~ 575 (693)
...++++.+|+|..+|..+..+|... ++..+|.+.+.+..+.+
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 88899999999999999999999883 45567877777765533
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00062 Score=68.53 Aligned_cols=141 Identities=21% Similarity=0.131 Sum_probs=114.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcC
Q 005512 415 MISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR-PEHYACMVDMLGRAG 493 (693)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 493 (693)
..-.+...|++++|+..++.+....+-|..-.......+...++.++|.+.++.+.. ..|+ ....-.+.++|.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcC
Confidence 334456789999999999998885555566666777789999999999999999974 4555 666778899999999
Q ss_pred CHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005512 494 KLNEAREFIERM--PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 494 ~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 571 (693)
++.+|..++++. ..+-|+..|..|..+|...|+..++.... +..|.-.|+|++|.......
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHHH
Confidence 999999999887 33347899999999999999988776544 45678899999999999998
Q ss_pred HhCC
Q 005512 572 KRRG 575 (693)
Q Consensus 572 ~~~~ 575 (693)
.++.
T Consensus 452 ~~~~ 455 (484)
T COG4783 452 SQQV 455 (484)
T ss_pred HHhc
Confidence 8764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0007 Score=74.59 Aligned_cols=144 Identities=13% Similarity=0.073 Sum_probs=115.8
Q ss_pred cCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHH
Q 005512 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--K-NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSV 449 (693)
Q Consensus 373 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~l 449 (693)
....+...+-.|.......|.+++|..+++...+ | +...+-.+...+.+.+++++|+..+++....-+-+......+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 3556688888899999999999999999999873 5 455777888999999999999999999988433345667777
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCChhhHHHHH
Q 005512 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM--PIRPDAGVWGSLL 518 (693)
Q Consensus 450 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll 518 (693)
..++.+.|.+++|..+|+++.. ..+-+...+..+...+-..|+.++|...|++. ...|....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 8888999999999999999986 33345778889999999999999999999987 2234444444444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00012 Score=74.50 Aligned_cols=129 Identities=9% Similarity=0.039 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 005512 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGL 458 (693)
Q Consensus 379 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~ 458 (693)
....+|+..+...++++.|..+|+++.+.++..+-.++..+...++-.+|++++++.....+-|...+..-...|.+.++
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34456677777789999999999999977766677788888888999999999999987555566667777778899999
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 005512 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509 (693)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 509 (693)
.+.|.++.+++.+ -.+.+..+|..|+..|.+.|++++|+-.++.+|+.|
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999985 344456699999999999999999999999997544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.1e-05 Score=65.90 Aligned_cols=97 Identities=20% Similarity=0.250 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 479 PEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
......+...+...|++++|.+.|+.. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 345566677777888888888888776 3334 56777777778888888999999999888888888888888999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 005512 557 SSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~ 575 (693)
..|++++|.+.++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 9999999999998877753
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.6e-06 Score=52.34 Aligned_cols=35 Identities=31% Similarity=0.602 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCc
Q 005512 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343 (693)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 343 (693)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999974
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0013 Score=73.18 Aligned_cols=233 Identities=11% Similarity=0.055 Sum_probs=137.2
Q ss_pred chhHHHHHHHHHHHcCCchhHHHHHhcccC--CC-hhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHH
Q 005512 276 DQSLQNAAMVMYARCGRMDMARRFFEGILN--KD-LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352 (693)
Q Consensus 276 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 352 (693)
+...+..|+..|...+++++|.++.+...+ |+ ...|-.+...+.+.++..++..+ .+. ..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------------~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---------------DS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------hh
Confidence 445677788888888888888888776533 22 23344444466666665555444 222 22
Q ss_pred hhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHH
Q 005512 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREAL 429 (693)
Q Consensus 353 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 429 (693)
.....++.....++..+.+. ..+...+-.|..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 22222232233333333332 23334556677777788888888888777763 4566777777777777 777777
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 005512 430 FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509 (693)
Q Consensus 430 ~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 509 (693)
+++.+.... +.....+..+.++|..+.. ...-+...+-.+..... ...+...
T Consensus 170 ~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~------------~~~~~~~ 221 (906)
T PRK14720 170 TYLKKAIYR--------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVL------------GHREFTR 221 (906)
T ss_pred HHHHHHHHH--------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHH------------hhhccch
Confidence 777776542 4445566677777777764 22222222222221111 1112222
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 510 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
-+.+|.-+-..|...++++++..+++.+++.+|.|..+..-|+..|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 34455555666777788888888888888888887777777777665
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=1e-05 Score=50.71 Aligned_cols=34 Identities=29% Similarity=0.586 Sum_probs=29.4
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 005512 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142 (693)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 142 (693)
+.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578999999999999999999999998888877
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00022 Score=61.87 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=84.1
Q ss_pred HHHHHHhccCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 005512 431 LFDQMKALIKPD-HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIR 508 (693)
Q Consensus 431 ~~~~m~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 508 (693)
.|++... ..|+ ......+...+...|++++|.+.++.+.. ..+.+...+..+...|.+.|++++|.+.+++. ...
T Consensus 5 ~~~~~l~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG-LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc-CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444 3443 34466667777888888888888888775 33446777888888888888898888888876 334
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 005512 509 P-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546 (693)
Q Consensus 509 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 546 (693)
| +...|..+...+...|+.++|...++++++++|++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 4 4667777778888899999999999999999987754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00019 Score=72.98 Aligned_cols=122 Identities=16% Similarity=0.083 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHh
Q 005512 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRI 523 (693)
Q Consensus 446 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 523 (693)
..+++..+...++++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| |...+......+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445556666677777777777777653 243 4445677777777777787777766 2233 55555555566888
Q ss_pred cCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005512 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572 (693)
Q Consensus 524 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 572 (693)
.++.+.|+.+++++.++.|++..+|..|+.+|.+.|++++|...++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988875
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.052 Score=59.11 Aligned_cols=123 Identities=17% Similarity=0.239 Sum_probs=79.0
Q ss_pred ccCChHHHHHHhcccCCC-CCcccHHHHHHHH--HhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHH
Q 005512 89 SLGSISHAFSLFSSVSDS-CDLFLWNVMIRAF--VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165 (693)
Q Consensus 89 ~~g~~~~A~~~f~~~~~~-~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 165 (693)
..+.+..|.+..+....+ ||. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|...+..+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 446666776666665333 233 345555544 5678888888777776554432 66777777777778888888888
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHHhCCCHH----HHHHHhccCCCCCcchHHH
Q 005512 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD----VCRQLFDEMPERNVVTWSS 215 (693)
Q Consensus 166 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~f~~m~~~~~~~~~~ 215 (693)
++++..+.. |+......+..+|.|.+++. .|.+++...+.+--.-|+.
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV 150 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV 150 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH
Confidence 888877654 45666677777777777664 3566666655544444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.8e-05 Score=49.52 Aligned_cols=34 Identities=35% Similarity=0.611 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 005512 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243 (693)
Q Consensus 210 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 243 (693)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0057 Score=56.79 Aligned_cols=153 Identities=15% Similarity=0.128 Sum_probs=67.2
Q ss_pred HHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHh----cCCHHHH
Q 005512 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSH----AGLIDEG 462 (693)
Q Consensus 387 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~----~g~~~~a 462 (693)
.|.+.|++++|.+.......-+....| +..+.+..+.+-|.+.+++|++ -.+..|.+.|..++.+ .+.+.+|
T Consensus 117 i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~--ided~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ--IDEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred HhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhccchhhhhH
Confidence 344555555555554442222222111 2223344445555555555543 1223334433333322 2345555
Q ss_pred HHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 005512 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM--PIRPDAGVWGSLLGACRIHS-NVELAEMAAKALFD 539 (693)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~ 539 (693)
.-+|+++.+ ...|+..+.+-+.-+....|++++|..++++. ....++.+...++-.-...| +.+--.+...++..
T Consensus 193 fyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 193 FYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 555555543 34455555555555555555555555555554 11123333333333323333 33333445555555
Q ss_pred cCCCCc
Q 005512 540 LDAENP 545 (693)
Q Consensus 540 ~~p~~~ 545 (693)
..|..+
T Consensus 271 ~~p~h~ 276 (299)
T KOG3081|consen 271 SHPEHP 276 (299)
T ss_pred cCCcch
Confidence 555543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0064 Score=56.04 Aligned_cols=162 Identities=17% Similarity=0.134 Sum_probs=112.7
Q ss_pred HHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHH
Q 005512 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTM---ISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLID 460 (693)
Q Consensus 384 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~ 460 (693)
++-+..-+|+.+.|...++.+..+=+.++... ..-+-..|++++|+++++...+.-+.|.+++---+...-..|.--
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH
Confidence 33444456777778777777653211111111 112445788999999999888766667777776666666677777
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHh---cCCHHHHHHHHH
Q 005512 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRI---HSNVELAEMAAK 535 (693)
Q Consensus 461 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~ 535 (693)
+|++-+....+ .+..|.+.|.-|.+.|...|++++|.-.++++ -..| ++..+..+...+.- ..+.+.+...|.
T Consensus 138 ~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 138 EAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred HHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88887777776 67788899999999999999999999999988 3345 44444455544322 337888999999
Q ss_pred HHhhcCCCCchh
Q 005512 536 ALFDLDAENPGR 547 (693)
Q Consensus 536 ~~~~~~p~~~~~ 547 (693)
+++++.|.+...
T Consensus 216 ~alkl~~~~~ra 227 (289)
T KOG3060|consen 216 RALKLNPKNLRA 227 (289)
T ss_pred HHHHhChHhHHH
Confidence 999999865443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0025 Score=58.59 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=125.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh
Q 005512 412 WSTMISGYGMHGHGREALFLFDQMKALIKPDH-ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 490 (693)
|..++-+....|+.+.|...++++...+ |.+ ..-..-..-+-..|.+++|.++++.+.+ .-+.|..++.--+-+.-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHHHHHHH
Confidence 3444555567889999999999998876 443 2222222234557899999999999997 34567777777777777
Q ss_pred hcCCHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC---ChHHHH
Q 005512 491 RAGKLNEAREFIERM--PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG---KRIEAN 565 (693)
Q Consensus 491 ~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~ 565 (693)
..|+--+|++-+.+. .+-.|...|.-+...|...|+++.|.-.+++++-..|-++..+..|++.+...| +++-|+
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 788877887766655 345699999999999999999999999999999999999999999999987766 456788
Q ss_pred HHHHHHHhCCC
Q 005512 566 RIRALMKRRGV 576 (693)
Q Consensus 566 ~~~~~m~~~~~ 576 (693)
+++.+..+-..
T Consensus 212 kyy~~alkl~~ 222 (289)
T KOG3060|consen 212 KYYERALKLNP 222 (289)
T ss_pred HHHHHHHHhCh
Confidence 88888877543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00094 Score=58.63 Aligned_cols=114 Identities=17% Similarity=0.115 Sum_probs=61.7
Q ss_pred cCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCh----hhHHHHHHHHHhcCCHHH
Q 005512 456 AGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERMP-IRPDA----GVWGSLLGACRIHSNVEL 529 (693)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~g~~~~ 529 (693)
.++...+...++.+.++++-.+ .....-.+...+...|++++|.+.|+... ..||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555565555322111 11222334455566666666666666551 11222 233334455666677777
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 005512 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570 (693)
Q Consensus 530 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 570 (693)
|+..++.. ...+-.+..+..++++|.+.|++++|+..|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77666542 22223445566777778888888888777765
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.054 Score=54.00 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=69.8
Q ss_pred HHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHH
Q 005512 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464 (693)
Q Consensus 385 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 464 (693)
+.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-.++... +-.++-|..++.+|...|..++|..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 44455667777777777777777777777778888888777765554321 2234667777777777777777777
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005512 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (693)
+...+. +..-+.+|.++|++.+|.+.--+.
T Consensus 259 yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 259 YIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 765421 134567777777777776665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00032 Score=55.98 Aligned_cols=93 Identities=23% Similarity=0.225 Sum_probs=73.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 005512 482 YACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559 (693)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 559 (693)
+..+...+...|++++|.+.+++. ...| +...|..+...+...+++++|...++...+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888776 3334 34566667777888889999999999999888888888888999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 005512 560 KRIEANRIRALMKRR 574 (693)
Q Consensus 560 ~~~~a~~~~~~m~~~ 574 (693)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988877653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0022 Score=56.22 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh--hHHHHHH
Q 005512 412 WSTMISGYGMHGHGREALFLFDQMKALIKPD---HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP--EHYACMV 486 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li 486 (693)
|..++..+ ..++...+...++.+....+.+ ......+...+...|++++|...|+.+... ...|.. .....|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 33444444 3677777777777777653333 233344556677788888888888888763 322221 2334466
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005512 487 DMLGRAGKLNEAREFIERMPIRP-DAGVWGSLLGACRIHSNVELAEMAAKAL 537 (693)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 537 (693)
..+...|++++|+..++..+..+ ....+......+...|+.++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77778888888888887763222 3444555556788888888888888765
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0047 Score=68.98 Aligned_cols=216 Identities=11% Similarity=0.069 Sum_probs=134.4
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCC-CCCcc-cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc-------
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSD-SCDLF-LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDK------- 144 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------- 144 (693)
+.+...+-.|+..|...+++++|.++.+.... .|+.. .|-.+...+.+.++..++..+ .+... +..+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~ 104 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEH 104 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHH
Confidence 56777888999999999999999998875422 23333 233333356666666666555 33221 11222
Q ss_pred ------------ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcch
Q 005512 145 ------------FTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT 212 (693)
Q Consensus 145 ------------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~ 212 (693)
..+..+..+|.+.|+.+++..+++.+++.. +.|..+.|-+...|... ++++|++++.+.
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA------- 175 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA------- 175 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-------
Confidence 455555566666677777777777777766 44666777777777777 777777666543
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHh-CCCCchhHHHHHHHHHHHcC
Q 005512 213 WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDN-GLDLDQSLQNAAMVMYARCG 291 (693)
Q Consensus 213 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g 291 (693)
+..|...+++.++.+++.++... .|+. ++.-.++.+.+... |...-+.++-.|-..|-+..
T Consensus 176 ----V~~~i~~kq~~~~~e~W~k~~~~--~~~d------------~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~ 237 (906)
T PRK14720 176 ----IYRFIKKKQYVGIEEIWSKLVHY--NSDD------------FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALE 237 (906)
T ss_pred ----HHHHHhhhcchHHHHHHHHHHhc--Cccc------------chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Confidence 33356666777777777777654 2332 22233334444332 33344455666777888888
Q ss_pred CchhHHHHHhcccC---CChhhHHHHHHHHH
Q 005512 292 RMDMARRFFEGILN---KDLVSWTSMIEAYA 319 (693)
Q Consensus 292 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 319 (693)
+++++..+|..+.+ .|..+..-++..|.
T Consensus 238 ~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 238 DWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 89999999988754 34455666666665
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.6e-05 Score=46.45 Aligned_cols=31 Identities=29% Similarity=0.620 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 005512 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140 (693)
Q Consensus 110 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 140 (693)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00012 Score=54.77 Aligned_cols=65 Identities=22% Similarity=0.126 Sum_probs=59.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 005512 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG-KRIEANRIRALMKRR 574 (693)
Q Consensus 510 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 574 (693)
++.+|..+...+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56788889999999999999999999999999999999999999999999 799999999987763
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.9e-05 Score=59.08 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=50.1
Q ss_pred cCCHHHHHHHHHhC----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 005512 492 AGKLNEAREFIERM----PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567 (693)
Q Consensus 492 ~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 567 (693)
.|++++|+.+++++ +..|+...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666665 2112344555566677777777777777777 556666656666778888888888888887
Q ss_pred HHH
Q 005512 568 RAL 570 (693)
Q Consensus 568 ~~~ 570 (693)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.8e-05 Score=46.38 Aligned_cols=31 Identities=42% Similarity=0.744 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 005512 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241 (693)
Q Consensus 211 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 241 (693)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0007 Score=57.08 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---chhHHHHHH
Q 005512 482 YACMVDMLGRAGKLNEAREFIERM-PIRPD----AGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN---PGRYVILSN 553 (693)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 553 (693)
+-.++..+.+.|++++|.+.|+++ ...|+ ...+..+...+...|++++|...++.++...|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444555555555555555554 11222 1233344455555666666666666666655543 334555566
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 005512 554 IYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 554 ~~~~~g~~~~a~~~~~~m~~~ 574 (693)
+|.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666665554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.15 Score=55.64 Aligned_cols=184 Identities=13% Similarity=0.153 Sum_probs=113.1
Q ss_pred HHccCChHHHHHHhcccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHH
Q 005512 87 YASLGSISHAFSLFSSVSDS--CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164 (693)
Q Consensus 87 y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 164 (693)
..|.|+.++|..+++..... .|..+...+-.+|.+.++.++|..+|++.... -|+..-...+..++.+.+++..-.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999876432 27788999999999999999999999999864 477888888889999988887666
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHhCCC----------HHHHHHHhccCCCCC--cchH---HHHHHHHHhcCCchHH
Q 005512 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGR----------VDVCRQLFDEMPERN--VVTW---SSLTGAYAQNGCYEEG 229 (693)
Q Consensus 165 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~f~~m~~~~--~~~~---~~li~~~~~~g~~~~A 229 (693)
++--++-+. ++.+.+.+=+.++.+...-. +.-|.+.++.+.+.+ ..+- ......+...|.+++|
T Consensus 131 kaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 655555553 34455555455555543211 123444444444322 1110 0111223345667777
Q ss_pred HHHHHH-HHHCCCCCCHHH--H-HHHHHhcCCchHHHHHHHHHHHhCC
Q 005512 230 LLLFKR-MMDEGIRPNRVV--I-LNAMACVRKVSEADDVCRVVVDNGL 273 (693)
Q Consensus 230 ~~~~~~-m~~~g~~p~~~t--~-l~~~~~~~~~~~a~~~~~~~~~~g~ 273 (693)
++++.. ..+.-...+... . +..+...+++.+..++...++..|.
T Consensus 210 l~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 210 LEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 777632 222221212211 2 5556666666666666666666653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0012 Score=55.61 Aligned_cols=104 Identities=12% Similarity=0.106 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----hhhHHHHH
Q 005512 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD----AGVWGSLL 518 (693)
Q Consensus 445 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll 518 (693)
++..+...+...|++++|.+.+..+.+...-.+ ....+..+...+.+.|++++|.+.|+++ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566666777777777777665321111 1234555677777777777777777765 22233 34566666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 005512 519 GACRIHSNVELAEMAAKALFDLDAENPGRY 548 (693)
Q Consensus 519 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 548 (693)
..+...|+.++|...++++++..|+++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 778888888888888888888888876543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0095 Score=55.38 Aligned_cols=149 Identities=16% Similarity=0.069 Sum_probs=111.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH----hh
Q 005512 416 ISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML----GR 491 (693)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~ 491 (693)
...|...|++++|++..+.... ......=.....+..+.+-|.+.++.|.+ + .+..+.+.|..++ .-
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~-----lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGEN-----LEAAALNVQILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhcc
Confidence 3557889999999999887322 12222222344566788999999999875 2 2344555454444 45
Q ss_pred cCCHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHH-HHH
Q 005512 492 AGKLNEAREFIERMP--IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEAN-RIR 568 (693)
Q Consensus 492 ~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~ 568 (693)
.+++.+|.-+|++|. ..|+..+.+-...++...|++++|+.+++.++..+++++.+...++-.--..|+-.++. +..
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 678999999999993 56788888888888999999999999999999999999999998888888889886654 445
Q ss_pred HHHHh
Q 005512 569 ALMKR 573 (693)
Q Consensus 569 ~~m~~ 573 (693)
.+++.
T Consensus 266 ~QLk~ 270 (299)
T KOG3081|consen 266 SQLKL 270 (299)
T ss_pred HHHHh
Confidence 55443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0021 Score=63.27 Aligned_cols=133 Identities=15% Similarity=0.174 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHH-HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 005512 411 SWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSA-CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489 (693)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 489 (693)
+|-.++...-+.+..+.|..+|.+..+....+...|...... +...++.+.|.++|+...+ .+..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
Confidence 566666666666667777777777764322233334433333 2224566668888888776 3445666777778888
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 005512 490 GRAGKLNEAREFIERM-PIRPD----AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 490 ~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 545 (693)
.+.|+.+.|+.+|++. ..-|. ...|...+.-=.+.|+.+....+.+++.+.-|++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 8888888888888776 22233 34788888888888888888888888888777643
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00029 Score=51.94 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=50.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 517 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34567788999999999999999999999999999999999999999999999887643
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00066 Score=69.37 Aligned_cols=105 Identities=12% Similarity=0.021 Sum_probs=83.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCC
Q 005512 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSN 526 (693)
Q Consensus 449 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 526 (693)
-...+...|++++|.+.|+.+++ -.+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34566778999999999999986 33446777888888999999999999999887 4455 56677778888899999
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 005512 527 VELAEMAAKALFDLDAENPGRYVILSNIY 555 (693)
Q Consensus 527 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 555 (693)
+++|+..++++++++|+++.....+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999998887666554443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.005 Score=65.82 Aligned_cols=140 Identities=15% Similarity=0.124 Sum_probs=73.1
Q ss_pred CCCHhHHHHHHHHHHhc--C---ChHHHHHHHHHHHhccCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh
Q 005512 406 QKNVISWSTMISGYGMH--G---HGREALFLFDQMKALIKPDH-ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479 (693)
Q Consensus 406 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 479 (693)
..|...|...+.|.... + +.+.|..+|++..+ ..|+. ..+..+..++.... +..|..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~-ldP~~a~a~A~la~~~~~~~----------------~~~~~~ 396 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK-SEPDFTYAQAEKALADIVRH----------------SQQPLD 396 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHH----------------hcCCcc
Confidence 46777888887775432 2 36688888888887 55553 44444433321110 111100
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC---C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 005512 480 EHYACMVDMLGRAGKLNEAREFIERM---P-IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY 555 (693)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 555 (693)
. ++++.+.+..++. + ...+..++..+.-.....|++++|...++++++++| +...|..++..|
T Consensus 397 ~------------~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~ 463 (517)
T PRK10153 397 E------------KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVY 463 (517)
T ss_pred H------------HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 0 1112222222221 1 112334444444444445666666666666666666 345666666666
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 005512 556 ASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~ 575 (693)
...|+.++|.+.+++....+
T Consensus 464 ~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 464 ELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 66666666666666665543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0032 Score=61.98 Aligned_cols=267 Identities=12% Similarity=0.007 Sum_probs=162.7
Q ss_pred HHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccC-cchhhhHHHHhhcccc
Q 005512 283 AMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD-SVTFLGVIRACSSLAS 358 (693)
Q Consensus 283 li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~ 358 (693)
....+.+..++..|+..+....+ .+..-|..-...+..-|++++|+--.+.-.+. +|. ..+..-.-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 33566677777777777765433 34556777777777778888877666554432 221 2233334444444444
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC-----CCCHhHHHHH-HHHHHhcCChHHHHHHH
Q 005512 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-----QKNVISWSTM-ISGYGMHGHGREALFLF 432 (693)
Q Consensus 359 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~l-i~~~~~~g~~~~A~~~~ 432 (693)
..+|.+.+.. ... | ....|...++... +|.-.+|-.+ ..++...|++++|...-
T Consensus 133 ~i~A~~~~~~---------~~~-------~----~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLKS---------KQA-------Y----KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhhh---------hhh-------h----HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 4444444330 000 0 1122222222222 1333445444 24556678888887776
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhH-------------HHHHHHHHhhcCCHHHHH
Q 005512 433 DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH-------------YACMVDMLGRAGKLNEAR 499 (693)
Q Consensus 433 ~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~A~ 499 (693)
-...+.-..+......-..++...++.+.|...|++.+ ...|+-.. +..=.+...+.|++.+|.
T Consensus 193 ~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 193 IDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHHHhcccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 66655322223322222334455677788888887765 33444222 111234566789999999
Q ss_pred HHHHhC-CCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 500 EFIERM-PIRP-----DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 500 ~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
+.+.+. .+.| ++..|.....+..+.|+.++|+.-.+.+++++|.-...|..-++++...++|++|.+-+++..+
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999876 4444 4445555556678899999999999999999998888888888999999999999999988765
Q ss_pred C
Q 005512 574 R 574 (693)
Q Consensus 574 ~ 574 (693)
.
T Consensus 350 ~ 350 (486)
T KOG0550|consen 350 L 350 (486)
T ss_pred h
Confidence 3
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0016 Score=51.74 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=23.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 005512 415 MISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470 (693)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 470 (693)
+...+...|++++|+..|++..+..+.+...+..+...+...+++++|.+.++...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443222222333334444444444444444444433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00044 Score=65.27 Aligned_cols=105 Identities=17% Similarity=0.095 Sum_probs=82.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCH
Q 005512 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNV 527 (693)
Q Consensus 450 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 527 (693)
.+-..+.+++++|...|..+++ -.+-|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 3456778899999999999885 33345666677788999999999998887776 55564 56888888999999999
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 528 ELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 528 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
++|++.|+++++++|++......|-.+--
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 99999999999999998755555544433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0016 Score=58.93 Aligned_cols=95 Identities=11% Similarity=-0.100 Sum_probs=73.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 005512 478 RPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD----AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILS 552 (693)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 552 (693)
....|..++..+...|++++|...|++. ...|+ ..+|..+...+...|+.++|+..+++++.+.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3445666677777788888888888776 22232 347888888899999999999999999999998888888888
Q ss_pred HHHH-------hcCChHHHHHHHHHHH
Q 005512 553 NIYA-------SSGKRIEANRIRALMK 572 (693)
Q Consensus 553 ~~~~-------~~g~~~~a~~~~~~m~ 572 (693)
.+|. ..|++++|...+++..
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 8888 7888887766666543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0027 Score=64.96 Aligned_cols=105 Identities=13% Similarity=0.069 Sum_probs=84.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC
Q 005512 415 MISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494 (693)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 494 (693)
....+...|++++|+..|++.++..+.+...|..+..++...|++++|...++.+++ --+.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCC
Confidence 345667889999999999999885555677888889999999999999999999986 333467788889999999999
Q ss_pred HHHHHHHHHhC-CCCCChhhHHHHHHHH
Q 005512 495 LNEAREFIERM-PIRPDAGVWGSLLGAC 521 (693)
Q Consensus 495 ~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 521 (693)
+++|+..|++. .+.|+......++..|
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999987 5566655555444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.002 Score=58.46 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 005512 481 HYACMVDMLGRAGKLNEAREFIERM-PIRPD----AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY 555 (693)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 555 (693)
.+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|++++|+..++++++..|.+...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555555666666666666554 11121 346666777788888888888888888888888888888888888
Q ss_pred HhcCC
Q 005512 556 ASSGK 560 (693)
Q Consensus 556 ~~~g~ 560 (693)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 87776
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.032 Score=58.12 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=55.7
Q ss_pred HHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHH
Q 005512 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGW 463 (693)
Q Consensus 384 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 463 (693)
...++...|+.++|..+. ..+|-.+-+.++-+++ -..+..+...+..-+.+...+..|-
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkl---d~~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKL---DKAEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhc---chhhhhHHHHHHHHHhhccccchHH
Confidence 345555666666665542 2334344444443333 2233444444544555566667777
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC
Q 005512 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP-IRPD 510 (693)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~ 510 (693)
++|.+|-. ..+++++....|++.+|..+-++.| ..||
T Consensus 768 eIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 768 EIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred HHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc
Confidence 77777632 2456788888888888888888875 3344
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0051 Score=55.80 Aligned_cols=130 Identities=16% Similarity=0.168 Sum_probs=85.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCC-C-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 005512 408 NVISWSTMISGYGMHGHGREALFLFDQMKAL-IKP-D-HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484 (693)
Q Consensus 408 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p-~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 484 (693)
....+..+...+...|++++|+..|++.... ..+ + ...+..+...+.+.|++++|...++++.+ -.+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence 3456677777777888888888888887764 222 1 35677777778888888888888887765 22234555666
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 005512 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560 (693)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 560 (693)
+...|...|+...+..-++.. ...+++|.+.++++++.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666777666665554333221 123677888889998888876 5556666665554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0024 Score=60.42 Aligned_cols=101 Identities=19% Similarity=0.188 Sum_probs=84.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCH
Q 005512 417 SGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKL 495 (693)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 495 (693)
.-+.+.+++.+|+..|.+.++..+-|.+-|..-..+|++.|.++.|++-.+..+. +.| ....|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcH
Confidence 3467889999999999999996666788888999999999999999998887764 444 356899999999999999
Q ss_pred HHHHHHHHhC-CCCCChhhHHHHHHH
Q 005512 496 NEAREFIERM-PIRPDAGVWGSLLGA 520 (693)
Q Consensus 496 ~~A~~~~~~m-~~~p~~~~~~~ll~~ 520 (693)
++|.+.|++. .+.|+..+|.+=|..
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999887 788988777665543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00076 Score=49.66 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=48.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 005512 485 MVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 545 (693)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888889998888887 4446 567777888888899999999999999999999864
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00048 Score=51.32 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=45.6
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 522 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
...|++++|+..++++++.+|+++.+...++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999887664
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0059 Score=53.03 Aligned_cols=87 Identities=15% Similarity=0.110 Sum_probs=75.1
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHH
Q 005512 487 DMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564 (693)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 564 (693)
--+-..|++++|..+|+-+ -..| +..-|..|...|...++++.|+..|..+..++++||..+...+..|...|+.++|
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3445789999999999876 1222 5556888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 005512 565 NRIRALMKR 573 (693)
Q Consensus 565 ~~~~~~m~~ 573 (693)
+..|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999998877
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0013 Score=49.74 Aligned_cols=57 Identities=14% Similarity=0.059 Sum_probs=51.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 519 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
..+.+.++++.|.++++++++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788999999999999999999999999999999999999999999999988754
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.05 Score=53.81 Aligned_cols=54 Identities=13% Similarity=0.205 Sum_probs=21.9
Q ss_pred HHHHhc-CChHHHHHHHHHHHhc-cCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 005512 417 SGYGMH-GHGREALFLFDQMKAL-IKP-D----HITFVSVLSACSHAGLIDEGWECFNSML 470 (693)
Q Consensus 417 ~~~~~~-g~~~~A~~~~~~m~~~-~~p-~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 470 (693)
..|... |++++|++.|++.... ... . ...+..+...+...|++++|.++|+++.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334444 5555555555554443 111 1 1223333444445555555555555444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.026 Score=50.97 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=67.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 005512 409 VISWSTMISGYGMHGHGREALFLFDQMKAL-IKP--DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485 (693)
Q Consensus 409 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 485 (693)
...|..+...+...|++++|+..|++.... ..| ...++..+...+.+.|+.++|...++...+ -.+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHH
Confidence 345666677777788888888888887664 222 124677777778888888888888877764 222233445555
Q ss_pred HHHHh-------hcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 005512 486 VDMLG-------RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544 (693)
Q Consensus 486 i~~~~-------~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 544 (693)
...|. +.|++++|+.. +++|...++++++.+|++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 55555 33333333322 345666777777787754
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.006 Score=60.08 Aligned_cols=129 Identities=11% Similarity=0.091 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCChhhHHHHHHH
Q 005512 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR-AGKLNEAREFIERM--PIRPDAGVWGSLLGA 520 (693)
Q Consensus 444 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~ 520 (693)
.+|..++...-+.+..+.|+++|..+.+. -..+..+|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888888999999999999853 33345556666666445 45666699999987 344578899999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 521 CRIHSNVELAEMAAKALFDLDAENP---GRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 521 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
+...++.+.|..+|++++..-|.+. ..|...++.=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766543 57889999999999999999999888763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.1 Score=45.93 Aligned_cols=132 Identities=15% Similarity=0.128 Sum_probs=99.7
Q ss_pred cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC-CCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---Chhh
Q 005512 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV-APRPEHYACMVDMLGRAGKLNEAREFIERMP-IRP---DAGV 513 (693)
Q Consensus 439 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~ 513 (693)
..|....-..|..+....|+..+|...|++... |+ .-|....-.+..+....+++.+|...+++.. ..| .+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 567777777788888889999999999988876 54 4567777777888888889999888888762 112 2223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 514 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
-..+...+...|....|+..|+.++.--|+ +..-.....++.+.|+.++|..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344557788899999999999999988774 45566778889999998888766655544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0047 Score=49.40 Aligned_cols=79 Identities=16% Similarity=0.123 Sum_probs=65.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCcccHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCChhhHH
Q 005512 113 NVMIRAFVDNRQFDRSLQLYAQMRELDI-NPDKFTFPFVLKACGYLR--------DIEFGVKVHKDAVDSGYWSDVFVGN 183 (693)
Q Consensus 113 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 183 (693)
...|..+..++++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 899999999999876543 2445678899999999999999999
Q ss_pred HHHHHHHh
Q 005512 184 SLIAMYGK 191 (693)
Q Consensus 184 ~li~~~~~ 191 (693)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0064 Score=62.32 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=87.3
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCCCCC-----cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHH
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCD-----LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFP 148 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 148 (693)
+-+......+++......+++++..++-+....|+ ..+..++++.|.+.|..+++++++..=...|+-||.+|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33444555566666666677778887776655432 2345688888888888888888888888888888888888
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhC
Q 005512 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192 (693)
Q Consensus 149 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 192 (693)
.+|..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888777666666665555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.075 Score=52.56 Aligned_cols=153 Identities=15% Similarity=0.100 Sum_probs=93.3
Q ss_pred CHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhc-CCHHHHHHHHHHhHH
Q 005512 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHA-GLIDEGWECFNSMLR 471 (693)
Q Consensus 393 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~ 471 (693)
++++|...+++ .+..|...|++..|-+.+.++-+ .|... |++++|.+.|+.+..
T Consensus 89 ~~~~Ai~~~~~-----------A~~~y~~~G~~~~aA~~~~~lA~--------------~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 89 DPDEAIECYEK-----------AIEIYREAGRFSQAAKCLKELAE--------------IYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp THHHHHHHHHH-----------HHHHHHHCT-HHHHHHHHHHHHH--------------HHCCTT--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHhcCcHHHHHHHHHHHHH--------------HHHHHcCCHHHHHHHHHHHHH
Confidence 66666665544 46778888888888777776543 55555 788899888888766
Q ss_pred hhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCC---CC-C----Chh-hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005512 472 DFGVAPR----PEHYACMVDMLGRAGKLNEAREFIERMP---IR-P----DAG-VWGSLLGACRIHSNVELAEMAAKALF 538 (693)
Q Consensus 472 ~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~-p----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~ 538 (693)
-+..... ..++..+...+.+.|++++|.++|++.. .. + +.. .+-..+-.+...||...|...+++..
T Consensus 144 ~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 144 LYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4322222 3356677889999999999999999872 11 1 111 11122234556789999999999999
Q ss_pred hcCCCC--c---hhHHHHHHHHHh--cCChHHHHHHHHH
Q 005512 539 DLDAEN--P---GRYVILSNIYAS--SGKRIEANRIRAL 570 (693)
Q Consensus 539 ~~~p~~--~---~~~~~l~~~~~~--~g~~~~a~~~~~~ 570 (693)
..+|.- + .....|+.+|-. ...++++..-|+.
T Consensus 224 ~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 224 SQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp TTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred hhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 988742 2 123345555533 2334444444443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00047 Score=42.74 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=30.8
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 005512 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANR 566 (693)
Q Consensus 534 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 566 (693)
|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.02 Score=49.53 Aligned_cols=92 Identities=9% Similarity=0.086 Sum_probs=72.3
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCH
Q 005512 383 AVVDLYVKCGSLMHARKVFDRMK--Q-KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLI 459 (693)
Q Consensus 383 ~li~~y~k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~ 459 (693)
++...+...|++++|..+|+-+. + -+..-|-.|..++-..|++++|+..|......-+-|+.++-.+..++...|+.
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 34444567899999999988776 3 35667888888888899999999999988775445678888888888999999
Q ss_pred HHHHHHHHHhHHhhC
Q 005512 460 DEGWECFNSMLRDFG 474 (693)
Q Consensus 460 ~~a~~~~~~~~~~~~ 474 (693)
+.|++.|+..+...+
T Consensus 120 ~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 120 CYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999988876433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0082 Score=57.32 Aligned_cols=101 Identities=13% Similarity=0.041 Sum_probs=81.2
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCchhHHH
Q 005512 476 APRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRI---HSNVELAEMAAKALFDLDAENPGRYVI 550 (693)
Q Consensus 476 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~ 550 (693)
+-|...|-.|...|.+.|+++.|..-|.+. .+.| +...+..+..++.. .....++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 456778888888888888888888888776 3333 45566666555332 235678899999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 551 LSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 551 l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
|+-.+...|++.+|...++.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998754
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.002 Score=50.27 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=46.5
Q ss_pred cCChHHHHHHHHHHHhccC--CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHH
Q 005512 422 HGHGREALFLFDQMKALIK--PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499 (693)
Q Consensus 422 ~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 499 (693)
.|+++.|+.+|+++.+..+ |+...+..+..++.+.|++++|..+++. .+ .+. .+....-.+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-LDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-HHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-CCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 5677777777777776522 2344445567777777777777777766 21 111 12233334466677777777777
Q ss_pred HHHHh
Q 005512 500 EFIER 504 (693)
Q Consensus 500 ~~~~~ 504 (693)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0056 Score=60.13 Aligned_cols=130 Identities=14% Similarity=0.056 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHh---HHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CC-CCCh
Q 005512 444 ITFVSVLSACSHAGLIDEGWECFNSM---LRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERM-------PI-RPDA 511 (693)
Q Consensus 444 ~t~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~~ 511 (693)
..|..|.+.|.-.|+++.|...++.- .+++|-.. ....++.|.+++.-.|+++.|.+.|+.. +. .-..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34666666666778999998877652 23345433 3446778888999999999999988764 21 1234
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhc----C--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 512 GVWGSLLGACRIHSNVELAEMAAKALFDL----D--AENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 512 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
.+..+|.+.|....+++.|+..+.+=+.+ + ......+.+|+++|...|..++|..+.++-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56677888888888899999888765432 2 23456788999999999999999887776543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.084 Score=55.69 Aligned_cols=30 Identities=13% Similarity=-0.076 Sum_probs=16.1
Q ss_pred CCchhHHHHHHHHHHHcCCchhHHHHHhcc
Q 005512 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGI 303 (693)
Q Consensus 274 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 303 (693)
.|.+..|..|.+.-.+.-.++.|...|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 455566666655555555555555544443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.098 Score=54.72 Aligned_cols=199 Identities=15% Similarity=0.099 Sum_probs=97.2
Q ss_pred HHHHHHHHhccCChHHHHHH--HHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcC
Q 005512 147 FPFVLKACGYLRDIEFGVKV--HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224 (693)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 224 (693)
++..=++|.+.++..--+-+ ++.+.+.|-.|+... +.+.++-.|.+.+|-++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 44444555555554433332 445666676566544 34556667888888887754 56
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhccc
Q 005512 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304 (693)
Q Consensus 225 ~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 304 (693)
....|+++|.+|+-- .+.+-+...|..++-+.+.+.-..... ++.-=.+-..++...|+.++|..+.-
T Consensus 660 ~enRAlEmyTDlRMF-------D~aQE~~~~g~~~eKKmL~RKRA~WAr--~~kePkaAAEmLiSaGe~~KAi~i~~--- 727 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF-------DYAQEFLGSGDPKEKKMLIRKRADWAR--NIKEPKAAAEMLISAGEHVKAIEICG--- 727 (1081)
T ss_pred chhhHHHHHHHHHHH-------HHHHHHhhcCChHHHHHHHHHHHHHhh--hcCCcHHHHHHhhcccchhhhhhhhh---
Confidence 666677777666421 112333333444433333322211100 00000234455556666666655431
Q ss_pred CCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHH
Q 005512 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384 (693)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 384 (693)
.+|-.+-+.++-+++-. .+..+...+..-+-+...+..|-+||..+-.. .++
T Consensus 728 ---------------d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksi 779 (1081)
T KOG1538|consen 728 ---------------DHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSL 779 (1081)
T ss_pred ---------------cccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHH
Confidence 22222333333222211 12223333333334444555555665554332 256
Q ss_pred HHHHHhhCCHHHHHHHHHhcCC
Q 005512 385 VDLYVKCGSLMHARKVFDRMKQ 406 (693)
Q Consensus 385 i~~y~k~g~~~~A~~~~~~~~~ 406 (693)
+++....+++.+|..+-++.++
T Consensus 780 VqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhheeecccchHhHhhhhhCcc
Confidence 6777777777777777777764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.015 Score=59.77 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc-cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 005512 413 STMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471 (693)
Q Consensus 413 ~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 471 (693)
.++|..|...|..++++.+++.=..- +-||..|++.|+..+.+.|++..|.++...|..
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~l 166 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMML 166 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 34555555555555555555443333 455555555555555555555555555444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.033 Score=48.85 Aligned_cols=108 Identities=16% Similarity=0.202 Sum_probs=93.0
Q ss_pred HhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-
Q 005512 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM---PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE- 543 (693)
Q Consensus 468 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~- 543 (693)
+..++..+.|++..--.|...+.+.|+..||...|++. .+.-|......+..+....+++..|...++.+.+..|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 33444567788888889999999999999999999987 45568888888889999999999999999999998873
Q ss_pred -CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 544 -NPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 544 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
.+.....++..|...|++++|+..|+...+.-
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 56678889999999999999999999988754
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0018 Score=48.08 Aligned_cols=49 Identities=27% Similarity=0.402 Sum_probs=23.4
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005512 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 455 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (693)
..|++++|.++|+.+.+ ..+-+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555543 22224444444555555555555555555554
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.64 Score=46.45 Aligned_cols=105 Identities=19% Similarity=0.224 Sum_probs=84.4
Q ss_pred HHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccH
Q 005512 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359 (693)
Q Consensus 280 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 359 (693)
.+..+.-+...|+...|.++-.+..-||..-|-..+.+++..+++++-.++-.. +-++..|-.++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 445566677889999999999999889999999999999999999887665332 22458899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHH
Q 005512 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400 (693)
Q Consensus 360 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 400 (693)
.+|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 8888776652 125678899999999998775
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.039 Score=59.10 Aligned_cols=50 Identities=18% Similarity=0.056 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhc--CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 527 VELAEMAAKALFDL--DAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 527 ~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
...+.+..++...+ +|.++..|..++-.+...|++++|...+++..+.+.
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p 451 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM 451 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 34555556665553 677788899998888889999999999999988763
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.53 Score=46.62 Aligned_cols=308 Identities=15% Similarity=0.102 Sum_probs=165.5
Q ss_pred hHHHHHHhcccCCCCCcccHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH--hccCChHHHHHHHH
Q 005512 93 ISHAFSLFSSVSDSCDLFLWNVMIRAFVD--NRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC--GYLRDIEFGVKVHK 168 (693)
Q Consensus 93 ~~~A~~~f~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~ 168 (693)
+..+.+.|..-+.. .-|.+|-.++.. .|+-..|.++-.+-... +.-|...+..++.+- .-.|+.+.|++-|+
T Consensus 69 P~t~~Ryfr~rKRd---rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfe 144 (531)
T COG3898 69 PYTARRYFRERKRD---RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFE 144 (531)
T ss_pred cHHHHHHHHHHHhh---hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 34444555443221 235555555544 45555555554443321 334555566666543 35577777777777
Q ss_pred HHHHhCCCCChhh--HHHHHHHHHhCCCHHHHHHHhccCCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHC-CCC
Q 005512 169 DAVDSGYWSDVFV--GNSLIAMYGKCGRVDVCRQLFDEMPE--R-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIR 242 (693)
Q Consensus 169 ~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~ 242 (693)
.|... |.... ...|.----+.|+.+.|+..-++.-. | -...|.+.+...+..|+++.|+++++.-... -+.
T Consensus 145 AMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 145 AMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 77642 22221 11222222456777776666555433 2 2346677777888888888888887776544 234
Q ss_pred CCHH-----HH--HHHHHhc-CCchHHHHHHHHHHHhCCCCchhH-HHHHHHHHHHcCCchhHHHHHhcccCCChhhHHH
Q 005512 243 PNRV-----VI--LNAMACV-RKVSEADDVCRVVVDNGLDLDQSL-QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313 (693)
Q Consensus 243 p~~~-----t~--l~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 313 (693)
++.. .+ .++.... .+...+...-.+..|. .||..- -..-...|.+.|++.++-.+++.+=+..+..-
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-- 297 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-- 297 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--
Confidence 4443 22 2222222 2344444444444443 333221 12234678888888888888887733222211
Q ss_pred HHHHHHHcCCchHHHHHHHHhHH-CCccc-CcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-
Q 005512 314 MIEAYAQADLPLEALEVYRQMIL-RRVLP-DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK- 390 (693)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~-~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k- 390 (693)
+...|.+..--+.++.-+++... ..++| +..+...+..+-...|++..++.--+...+. .|....|-.|.+.-..
T Consensus 298 ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAe 375 (531)
T COG3898 298 IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAE 375 (531)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhc
Confidence 12233333333444444444332 12344 3455556667777778887777666655553 4666677777766544
Q ss_pred hCCHHHHHHHHHhcC-CCCHhHHH
Q 005512 391 CGSLMHARKVFDRMK-QKNVISWS 413 (693)
Q Consensus 391 ~g~~~~A~~~~~~~~-~~~~~~~~ 413 (693)
.|+-.+++..+.+.. .|--..|.
T Consensus 376 tGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 376 TGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred cCchHHHHHHHHHHhcCCCCCccc
Confidence 488888888887765 34334454
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0024 Score=47.66 Aligned_cols=64 Identities=22% Similarity=0.228 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcC-CHHHHHHHHHHHhhcCC
Q 005512 479 PEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHS-NVELAEMAAKALFDLDA 542 (693)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 542 (693)
...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456667777777778888887777766 3334 4667777777888888 68888888888888877
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.76 E-value=1.1 Score=48.33 Aligned_cols=336 Identities=12% Similarity=0.067 Sum_probs=171.1
Q ss_pred HHCCCCCCcccHHH-----HHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCC---HHHHHHHhccCCC
Q 005512 136 RELDINPDKFTFPF-----VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR---VDVCRQLFDEMPE 207 (693)
Q Consensus 136 ~~~~~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~~ 207 (693)
..-|++.+..-|.. ++.-+...+.+..|.++-..+-..-.. ...++.....-+.+..+ -+-+..+=+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 34567666655544 455566677888888887776432111 15677777777777643 2334444444444
Q ss_pred --CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCC------CCCHHHH-HHHHHhcCCchHHHHHHHHHHHhCCCCchh
Q 005512 208 --RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI------RPNRVVI-LNAMACVRKVSEADDVCRVVVDNGLDLDQS 278 (693)
Q Consensus 208 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~t~-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 278 (693)
...++|..+..--.+.|+++-|..+++.=...+. +-+.... +.-+...|+.+...+++-++...-
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~------ 576 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL------ 576 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH------
Confidence 5677898888888889999999888764222211 1111111 555555666666555555544321
Q ss_pred HHHHHHHHHHHcCCchhHHHHHhcccC-CChhhHHHHHHHHHHcCCchHHHHHHHHhH------HCCcccCcchhhhHHH
Q 005512 279 LQNAAMVMYARCGRMDMARRFFEGILN-KDLVSWTSMIEAYAQADLPLEALEVYRQMI------LRRVLPDSVTFLGVIR 351 (693)
Q Consensus 279 ~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g~~p~~~t~~~ll~ 351 (693)
+.-+...-..+...|..+|.+..+ .|..+ +..+.+.++-.+++..|..-. ..|..|+ ....-.
T Consensus 577 ---~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~ 646 (829)
T KOG2280|consen 577 ---NRSSLFMTLRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAAN 646 (829)
T ss_pred ---HHHHHHHHHHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHH
Confidence 001111122334445555544322 12111 111222223223322221100 1122222 223334
Q ss_pred HhhccccHHHH-HHH---------HHHHH-HhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHH
Q 005512 352 ACSSLASFQQA-RTV---------HGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420 (693)
Q Consensus 352 a~~~~~~~~~a-~~i---------~~~~~-~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 420 (693)
+|++....... +.+ ...+. +.|......+.+--+.-+...|+..+|.++-.+.+-||-..|---+.+++
T Consensus 647 ~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 647 AFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALA 726 (829)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 44443331111 111 11111 11222222222333344555677777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 005512 421 MHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500 (693)
Q Consensus 421 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 500 (693)
..+++++-+++-+.+. .+.-|.-...+|.+.|+.++|.+++-... |.. -.+.+|.+.|++.+|.+
T Consensus 727 ~~~kweeLekfAkskk-----sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSKK-----SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhhHHHHHHHHhccC-----CCCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHH
Confidence 7777766555443322 24556666677777777777777765432 111 35667777777777766
Q ss_pred HHH
Q 005512 501 FIE 503 (693)
Q Consensus 501 ~~~ 503 (693)
+--
T Consensus 792 ~A~ 794 (829)
T KOG2280|consen 792 LAA 794 (829)
T ss_pred HHH
Confidence 543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.093 Score=48.81 Aligned_cols=224 Identities=13% Similarity=0.032 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCC--ChhhHHHHHHHhcCcCcH-----HHHHHHHHHhccCCCCCHhH
Q 005512 7 TQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFF--DPETCISSIKQCQTLQSL-----KTLHAFTLRSRFYHHHDLFL 79 (693)
Q Consensus 7 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~ 79 (693)
.|+.=+.++.+.....+|.--++.....+..+... -+.+|. .+.++. +-+|+.+... ...-
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp------~rrGSmVPFsmR~lhAe~~~~------lgnp 138 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYP------GRRGSMVPFSMRILHAELQQY------LGNP 138 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCC------CCcCccccHHHHHHHHHHHHh------cCCc
Confidence 45666777888888888876666555444222111 011111 233333 6778776643 1224
Q ss_pred HHHHHHHHHccCChHHHHHHhcccC--CCCCcc--------cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHH
Q 005512 80 VTNLVSQYASLGSISHAFSLFSSVS--DSCDLF--------LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149 (693)
Q Consensus 80 ~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 149 (693)
+++|.+.|.-..-+++-...|+.-. +. .+. .-+.+++.+.-.|.+.-.++++.+.++...+.++.....
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ES-sv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEES-SIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG 217 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhh-HHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence 6788888877766666666666432 22 222 345677777778888889999999988776667777788
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChh-----hHHHHHHHHHhCCCHHHHHHHhccCCCC---CcchHHHHHHHHH
Q 005512 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVF-----VGNSLIAMYGKCGRVDVCRQLFDEMPER---NVVTWSSLTGAYA 221 (693)
Q Consensus 150 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~ 221 (693)
+.+.-.+.||.+.|...++...+..-..|.. +.......|.-..++.+|...|++++.. |++.-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 8888889999999999999887653333333 3333444566678888999999888764 4445554444445
Q ss_pred hcCCchHHHHHHHHHHHCCCCC
Q 005512 222 QNGCYEEGLLLFKRMMDEGIRP 243 (693)
Q Consensus 222 ~~g~~~~A~~~~~~m~~~g~~p 243 (693)
-.|+..+|++....|.+..+.|
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCcc
Confidence 5688999999999998774443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.15 Score=48.92 Aligned_cols=171 Identities=11% Similarity=0.077 Sum_probs=100.4
Q ss_pred HHHHHHhhCCHHHHHHHHHhcCC--CCH-hH---HHHHHHHHHhcCChHHHHHHHHHHHhc--cCCChhHHHHHHHHHHh
Q 005512 384 VVDLYVKCGSLMHARKVFDRMKQ--KNV-IS---WSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSH 455 (693)
Q Consensus 384 li~~y~k~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~~~t~~~ll~~~~~ 455 (693)
....+.+.|++++|.+.|+++.. |+. .. .-.++.+|.+.+++++|...|++..+. -.|+ ..+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHHHhh
Confidence 34445567888888888888763 322 11 123456677788888888888888775 2222 233333333321
Q ss_pred --cC---------------CH---HHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHH
Q 005512 456 --AG---------------LI---DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515 (693)
Q Consensus 456 --~g---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~ 515 (693)
.+ +. .+|...|+. +++-|-.+.-..+|...+..+..+--..- -
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~----------------li~~yP~S~ya~~A~~rl~~l~~~la~~e-~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSK----------------LVRGYPNSQYTTDATKRLVFLKDRLAKYE-L 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHH----------------HHHHCcCChhHHHHHHHHHHHHHHHHHHH-H
Confidence 10 11 122233333 33333334444455444433310000000 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005512 516 SLLGACRIHSNVELAEMAAKALFDLDAENP---GRYVILSNIYASSGKRIEANRIRALMK 572 (693)
Q Consensus 516 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 572 (693)
.+..-|.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 233558888999999999999999888654 456678899999999999999887654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.016 Score=56.13 Aligned_cols=94 Identities=11% Similarity=0.106 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc---hhHHHHH
Q 005512 481 HYACMVDMLGRAGKLNEAREFIERM-PIRPDA----GVWGSLLGACRIHSNVELAEMAAKALFDLDAENP---GRYVILS 552 (693)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~ 552 (693)
.|..-+..+.+.|++++|...|+.. ...|+. ..+-.+...+...|++++|...|+.+++..|+++ ..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444455555567777777777666 223332 3555566677777888888888888887777643 3444556
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 005512 553 NIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 553 ~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
.+|...|++++|.++++++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777888888888888877664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.27 Score=49.56 Aligned_cols=159 Identities=17% Similarity=0.081 Sum_probs=101.3
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCC-------CHhHHHHHHHHHHh---cCChHHHHHHHHHHHhc-cCCChhHHHHHHH
Q 005512 383 AVVDLYVKCGSLMHARKVFDRMKQK-------NVISWSTMISGYGM---HGHGREALFLFDQMKAL-IKPDHITFVSVLS 451 (693)
Q Consensus 383 ~li~~y~k~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~ 451 (693)
.|+-.|-...+++...++.+.+... ....-....-++.+ .|+.++|++++..+... ..+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577788888888888888743 11112223445556 78899999999886555 7778888888777
Q ss_pred HHHh---------cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHH----HHHHHH---Hh-C------CCC
Q 005512 452 ACSH---------AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN----EAREFI---ER-M------PIR 508 (693)
Q Consensus 452 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~---~~-m------~~~ 508 (693)
.|-. ...+++|...+.+. +.+.|+...--.++..+.-.|... +..++- .. . .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 22466777777654 355565544333344444444322 222222 11 1 112
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 005512 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544 (693)
Q Consensus 509 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 544 (693)
.|--.+.+++.++.-.|+.+.|.+.++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 455666788999999999999999999999998764
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.67 E-value=1.3 Score=47.86 Aligned_cols=114 Identities=14% Similarity=0.091 Sum_probs=88.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 005512 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521 (693)
Q Consensus 442 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 521 (693)
...|.+--+.-+...|...+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+.+. .+.-|.-+..+|
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c 754 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEAC 754 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHH
Confidence 34455566677788899999988866543 3788888888999999999999888887763 366777888999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005512 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 522 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 571 (693)
.+.|+.++|...+-+.-.+ .-...+|.++|++.+|.+.--+-
T Consensus 755 ~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHHh
Confidence 9999999999887765322 25778999999999998766543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.88 Score=45.97 Aligned_cols=133 Identities=9% Similarity=0.063 Sum_probs=84.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 005512 409 VISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486 (693)
Q Consensus 409 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 486 (693)
...|...+..-.+..-.+.|..+|-+..+. +.++...+++++.-++ .|+...|..+|+.-.. .++.+..--...+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 445666666666666677777777777666 6667777777776554 4667777777776554 2222233334556
Q ss_pred HHHhhcCCHHHHHHHHHhC--CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 005512 487 DMLGRAGKLNEAREFIERM--PIRPD--AGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544 (693)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 544 (693)
+-+.+-++-+.|..+|+.. .+..+ ..+|..+|.--..-|+...+..+-+++.+.-|+.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6667777777777777754 11222 4567777766666777777777777777776654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.23 Score=47.67 Aligned_cols=54 Identities=19% Similarity=0.018 Sum_probs=32.3
Q ss_pred HHHHHHcCCchhHHHHHhcccCCCh---hh---HHHHHHHHHHcCCchHHHHHHHHhHHC
Q 005512 284 MVMYARCGRMDMARRFFEGILNKDL---VS---WTSMIEAYAQADLPLEALEVYRQMILR 337 (693)
Q Consensus 284 i~~y~~~g~~~~A~~~f~~~~~~~~---~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (693)
...+.+.|++++|.+.|+++....+ .. .-.++.+|.+.+++++|...|++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444556777777777776644211 11 123455667777777777777777665
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.028 Score=46.78 Aligned_cols=85 Identities=15% Similarity=0.012 Sum_probs=47.8
Q ss_pred HHHhhcCCHHHHHHHHHhC---CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---CchhHHHHHHHHHhc
Q 005512 487 DMLGRAGKLNEAREFIERM---PIRPD--AGVWGSLLGACRIHSNVELAEMAAKALFDLDAE---NPGRYVILSNIYASS 558 (693)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 558 (693)
.++-..|+.++|+.+|++. +.... ...+-.+.+.++..|++++|+.++++.....|+ +......++.++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444455555555555544 11111 223334455666677777777777776666565 444455556666777
Q ss_pred CChHHHHHHHHHH
Q 005512 559 GKRIEANRIRALM 571 (693)
Q Consensus 559 g~~~~a~~~~~~m 571 (693)
|+.++|.+.+-..
T Consensus 89 gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 89 GRPKEALEWLLEA 101 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 7777777666543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.01 Score=60.31 Aligned_cols=63 Identities=14% Similarity=-0.073 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG---RYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 511 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
...|+.+..++...|++++|+..|+++++++|++.. +|..++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554442 245555555555555555555555444
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.024 Score=45.53 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhHHCCc-ccCcchhhhHHHHhhccc--------cHHHHHHHHHHHHHhcCCCchhH
Q 005512 310 SWTSMIEAYAQADLPLEALEVYRQMILRRV-LPDSVTFLGVIRACSSLA--------SFQQARTVHGIIIHCFLGNQLAL 380 (693)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~i~~~~~~~~~~~~~~~ 380 (693)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.++..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345566777777999999999999999999 899999999998876543 24456667778888888888888
Q ss_pred HHHHHHHHHh
Q 005512 381 DTAVVDLYVK 390 (693)
Q Consensus 381 ~~~li~~y~k 390 (693)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8887776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.51 E-value=1.4 Score=46.48 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=128.0
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCChhHHHHHHH
Q 005512 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQK---NVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLS 451 (693)
Q Consensus 376 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~ 451 (693)
++...|..-++.-.+.|+.+.+.-+|++..-| =...|--.+.-....|+.+-|-.++....+- ++-.+.+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 45667777888888899999999999888744 2234555555555558888888888776665 4444444333344
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCChhhHHHHHH-----HH
Q 005512 452 ACSHAGLIDEGWECFNSMLRDFGVAPRP-EHYACMVDMLGRAGKLNEAR---EFIERM-PIRPDAGVWGSLLG-----AC 521 (693)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~-----~~ 521 (693)
-+-..|+.+.|..+++.+..+ . |+. ..-..-+.+..+.|..+.+. +++... +.+.+..+...+.- -+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 456678999999999999874 4 543 33344567778889998888 555444 22334333333331 24
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCh
Q 005512 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561 (693)
Q Consensus 522 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 561 (693)
...++.+.|..++.++.+..|++...|..+++.....+..
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 5568999999999999999999999999999988776643
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0052 Score=40.88 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 005512 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553 (693)
Q Consensus 512 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 553 (693)
.+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999988877653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.51 E-value=1.1 Score=45.27 Aligned_cols=444 Identities=11% Similarity=0.124 Sum_probs=232.0
Q ss_pred HHHHHHHHHhccCCCCCHhHHHHHHHHHHccCChHHHHHHhcccCCC-C-CcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005512 60 KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS-C-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137 (693)
Q Consensus 60 ~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 137 (693)
.++.+.+... |.|...|-.||.-|...|+.++-+++++++..+ | -..+|..-|++=....+++....+|.+.+.
T Consensus 29 lrLRerIkdN----PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 29 LRLRERIKDN----PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHhhcC----chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 5566665554 779999999999999999999999999999765 2 334688888888888899999999999887
Q ss_pred CCCCCCcccHHHHHHHHhccCCh------HHHHHHHHHHHH-hCCCCCh-hhHHHHHHHHH---hCC------CHHHHHH
Q 005512 138 LDINPDKFTFPFVLKACGYLRDI------EFGVKVHKDAVD-SGYWSDV-FVGNSLIAMYG---KCG------RVDVCRQ 200 (693)
Q Consensus 138 ~~~~p~~~t~~~ll~~~~~~~~~------~~a~~~~~~~~~-~g~~~~~-~~~~~li~~~~---~~g------~~~~A~~ 200 (693)
... +...|...|.--.+.+.. ....+.++..+. .+++|-. ..|+..+..+- ..| ++|..++
T Consensus 105 k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~ 182 (660)
T COG5107 105 KSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRN 182 (660)
T ss_pred hhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 544 444555555544333322 122344554444 2444433 34565555432 223 3455666
Q ss_pred HhccCCC-C---------CcchHHHHHHHHHh-------cCCchHHHHHHHHHHH--CCCCCCHHHHHHHHHhcCCchHH
Q 005512 201 LFDEMPE-R---------NVVTWSSLTGAYAQ-------NGCYEEGLLLFKRMMD--EGIRPNRVVILNAMACVRKVSEA 261 (693)
Q Consensus 201 ~f~~m~~-~---------~~~~~~~li~~~~~-------~g~~~~A~~~~~~m~~--~g~~p~~~t~l~~~~~~~~~~~a 261 (693)
.+.+|.. | |-..|..=++.... .--+-.|.+.+++... .|+..-..+++..+.+..+....
T Consensus 183 ~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S 262 (660)
T COG5107 183 GYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDS 262 (660)
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccc
Confidence 6666654 1 22222211211111 1124456666666643 35544444443333222221110
Q ss_pred H--HHHHHHHHhCCCC----------------------chhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHH-H
Q 005512 262 D--DVCRVVVDNGLDL----------------------DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI-E 316 (693)
Q Consensus 262 ~--~~~~~~~~~g~~~----------------------~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li-~ 316 (693)
. ...+.-...|+.. ...+|----..+...++-+.|....++-.+-.+. .+..+ .
T Consensus 263 ~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-L~~~lse 341 (660)
T COG5107 263 NWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-LTMFLSE 341 (660)
T ss_pred hhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-hheeHHH
Confidence 0 0011111111111 1111111111122234444444444332211111 11111 1
Q ss_pred HHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHh---hccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCC
Q 005512 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC---SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393 (693)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~ 393 (693)
.|--..+.++....|++..+.-. .-| +.+.+= ..-|+++.-.++ +.+. ...-..++-.+++.-.+..-
T Consensus 342 ~yel~nd~e~v~~~fdk~~q~L~----r~y-s~~~s~~~s~~D~N~e~~~El---l~kr-~~k~t~v~C~~~N~v~r~~G 412 (660)
T COG5107 342 YYELVNDEEAVYGCFDKCTQDLK----RKY-SMGESESASKVDNNFEYSKEL---LLKR-INKLTFVFCVHLNYVLRKRG 412 (660)
T ss_pred HHhhcccHHHHhhhHHHHHHHHH----HHH-hhhhhhhhccccCCccccHHH---HHHH-HhhhhhHHHHHHHHHHHHhh
Confidence 12222222222222222111000 000 000000 001112111111 1110 01223455667777777777
Q ss_pred HHHHHHHHHhcCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005512 394 LMHARKVFDRMKQ-----KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468 (693)
Q Consensus 394 ~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 468 (693)
++.|+.+|-+..+ +++..++++|.-++ .|+..-|..+|+--....+.+..-..-.+.-+...++-..|+.+|+.
T Consensus 413 l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 8999999988763 67888999998776 46778899999877664444445455667777888999999999997
Q ss_pred hHHhhCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCChhhHHHHHHHHH
Q 005512 469 MLRDFGVAPR--PEHYACMVDMLGRAGKLNEAREFIERM-PIRPDAGVWGSLLGACR 522 (693)
Q Consensus 469 ~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~ 522 (693)
.+. .+..+ ...|..+|+--..-|++..+..+=++| ..-|...+.....+-|.
T Consensus 492 sv~--r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 492 SVE--RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred hHH--HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 765 34344 567889999888899998887776666 22344444344444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.48 E-value=1.2 Score=45.22 Aligned_cols=58 Identities=21% Similarity=0.362 Sum_probs=33.7
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHH
Q 005512 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516 (693)
Q Consensus 454 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 516 (693)
...|++.++.-+-..+. .+.|++.+|..+.-.+....+++||++++..+| |+..+|++
T Consensus 473 ysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 34566666555444443 456666666666666666666666666666664 45544444
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.017 Score=52.49 Aligned_cols=87 Identities=14% Similarity=0.201 Sum_probs=56.2
Q ss_pred CcccHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc----------------CChHHHHHH
Q 005512 108 DLFLWNVMIRAFVDN-----RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL----------------RDIEFGVKV 166 (693)
Q Consensus 108 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----------------~~~~~a~~~ 166 (693)
|-.+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||..+=+. .+-+-|.++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 445555555555432 34444444556666666666666777666655331 134567888
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHhCCC
Q 005512 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGR 194 (693)
Q Consensus 167 ~~~~~~~g~~~~~~~~~~li~~~~~~g~ 194 (693)
+++|...|+-||..++..|++.+++.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.064 Score=47.04 Aligned_cols=61 Identities=25% Similarity=0.237 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 513 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
....++..+...|++++|+..+++++..+|-+...|..|+.+|...|+..+|.++|+++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556677788899999999999999999999999999999999999999999999999864
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.013 Score=44.21 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=48.9
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 005512 487 DMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548 (693)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 548 (693)
..|.+.+++++|.++++++ ...| +...|......+...|++++|.+.++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5677888888888888887 4445 566677777788889999999999999999999776543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.23 Score=46.26 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhc-----CCCchhHHHHHHH
Q 005512 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-----LGNQLALDTAVVD 386 (693)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-----~~~~~~~~~~li~ 386 (693)
+.++..+.-.|.+.-.+..+++.++...+-+....+.+.+.-.+.|+.+.+...++.+.+.. ......+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 45555555666677777777777765544455556666666667777777777777666532 2222333333334
Q ss_pred HHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 387 LYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKA 437 (693)
Q Consensus 387 ~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 437 (693)
.|.-.+++.+|...|.+++. .|++.-|.-.-+..-.|+..+|++..+.|.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556677777777777663 3455555544444456777777777777776
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.1 Score=43.46 Aligned_cols=105 Identities=12% Similarity=0.079 Sum_probs=50.8
Q ss_pred HHHHHHHcCCchHHHHHHHHhHHCCcccCc--chhhhHHHHhhccccHHHHHHHHHHHHHhcCC--CchhHHHHHHHHHH
Q 005512 314 MIEAYAQADLPLEALEVYRQMILRRVLPDS--VTFLGVIRACSSLASFQQARTVHGIIIHCFLG--NQLALDTAVVDLYV 389 (693)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~li~~y~ 389 (693)
+...+-..|+.++|+.+|++....|..... ..+..+-+++...|++++|..++......... .+..+...+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445566677777777777777776654431 23333444555555555555555555443211 01111112222344
Q ss_pred hhCCHHHHHHHHHhcCCCCHhHHHHHHHH
Q 005512 390 KCGSLMHARKVFDRMKQKNVISWSTMISG 418 (693)
Q Consensus 390 k~g~~~~A~~~~~~~~~~~~~~~~~li~~ 418 (693)
..|+.++|.+.+-....++...|.--|..
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ 115 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRF 115 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544433333333333333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=2.3 Score=45.50 Aligned_cols=29 Identities=10% Similarity=-0.134 Sum_probs=15.7
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHhccC
Q 005512 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205 (693)
Q Consensus 177 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m 205 (693)
|.+..|..|...-...-.++.|+..|-+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 45556665555555555555555555444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.1 Score=50.02 Aligned_cols=101 Identities=19% Similarity=0.120 Sum_probs=47.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCCChhhHHH-
Q 005512 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG---KLNEAREFIERM-PIRPDAGVWGS- 516 (693)
Q Consensus 442 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p~~~~~~~- 516 (693)
|...|..|..+|...|+.+.|...|....+ --.+++..+..+..++..+. ...++.++|+++ ...|+.+.-.+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 444455555555555555555555554443 22233333444444333221 233455555554 33443333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 005512 517 LLGACRIHSNVELAEMAAKALFDLDAEN 544 (693)
Q Consensus 517 ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 544 (693)
|..++...|++.+|...++.+++..|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 3344556666666666666666666544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.1 Score=50.52 Aligned_cols=92 Identities=10% Similarity=0.105 Sum_probs=52.1
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCCH
Q 005512 454 SHAGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD----AGVWGSLLGACRIHSNV 527 (693)
Q Consensus 454 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~ 527 (693)
.+.|++++|...|+.+++.+.-.+ ....+-.+...|...|++++|...|+.+ ...|+ ...|-.+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334555555555555554321111 0234445556666666666666666555 11121 33344445556678888
Q ss_pred HHHHHHHHHHhhcCCCCc
Q 005512 528 ELAEMAAKALFDLDAENP 545 (693)
Q Consensus 528 ~~a~~~~~~~~~~~p~~~ 545 (693)
+.|...++++++..|++.
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 888888888888888764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.059 Score=53.66 Aligned_cols=64 Identities=11% Similarity=-0.052 Sum_probs=57.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 511 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
..+++.+..++.+.+++..|++...+.++++|+|.-....-+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3456667778889999999999999999999999999999999999999999999999999874
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.014 Score=44.69 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 512 GVWGSLLGACRIHSNVELAEMAAKALFDL----DAE---NPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 512 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
.+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556666677777777777777776643 222 245678889999999999999999988654
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.91 E-value=2.2 Score=42.88 Aligned_cols=22 Identities=14% Similarity=0.147 Sum_probs=11.8
Q ss_pred HHHHhcCCchHHHHHHHHHHHh
Q 005512 250 NAMACVRKVSEADDVCRVVVDN 271 (693)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~~~~~ 271 (693)
..+...++.+.|.++-..+++.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl 198 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL 198 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc
Confidence 3444556666666555555543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.082 Score=48.13 Aligned_cols=88 Identities=15% Similarity=0.270 Sum_probs=52.7
Q ss_pred CCCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHhc-cCCChhHHHHHHHHHHhc----------------CCHHHHH
Q 005512 406 QKNVISWSTMISGYGM-----HGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHA----------------GLIDEGW 463 (693)
Q Consensus 406 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~----------------g~~~~a~ 463 (693)
.+|-.+|..++..|.+ .|..+=....+..|.+- +.-|..+|+.||+.+=+. .+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3444555555555443 24444444445555554 555555555555544321 2345678
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHhhcCC
Q 005512 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494 (693)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 494 (693)
+++++|.. +|+.||.+++..|++.+++.+.
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 88888876 5888888888888888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.83 E-value=3.8 Score=45.05 Aligned_cols=52 Identities=4% Similarity=0.098 Sum_probs=29.2
Q ss_pred HHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 005512 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435 (693)
Q Consensus 384 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 435 (693)
++..+.+..+.+.+..+.+...+.++..|-.+++.+++.+..+.-.+...+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 3344455555566666555555556666666666666666555444444433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=2.3 Score=42.39 Aligned_cols=273 Identities=16% Similarity=0.163 Sum_probs=166.6
Q ss_pred CCchhHHHHHhcc---cCCChhhHHHHHHH--HHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHH
Q 005512 291 GRMDMARRFFEGI---LNKDLVSWTSMIEA--YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365 (693)
Q Consensus 291 g~~~~A~~~f~~~---~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 365 (693)
|+-..|++.-.+- ...|....-.++.+ -.-.|++++|.+-|+.|...- ..-..-+..+.-.-.+.|..+.++++
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 4555555544332 22333333333332 233577777777777776420 00111122233333466777777776
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC-----CCCHh--HHHHHHHHHHh---cCChHHHHHHHHHH
Q 005512 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-----QKNVI--SWSTMISGYGM---HGHGREALFLFDQM 435 (693)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m 435 (693)
-+..-..- +.-.....++++..+..|+++.|+++.+.-. ++|+. .--.|+.+-+. ..+...|...-.+.
T Consensus 177 Ae~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a 255 (531)
T COG3898 177 AERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA 255 (531)
T ss_pred HHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 66655432 2224556778888889999999999987654 34443 22233333222 23455566555544
Q ss_pred HhccCCChhH-HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-
Q 005512 436 KALIKPDHIT-FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM----PIRP- 509 (693)
Q Consensus 436 ~~~~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p- 509 (693)
.+ +.||.+. -..-..++.+.|++.++-.+++.+-+ ..|.+..+.. -.+.|.|+... .-+++. .++|
T Consensus 256 ~K-L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~l--Y~~ar~gdta~--dRlkRa~~L~slk~n 327 (531)
T COG3898 256 NK-LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALL--YVRARSGDTAL--DRLKRAKKLESLKPN 327 (531)
T ss_pred hh-cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHH--HHHhcCCCcHH--HHHHHHHHHHhcCcc
Confidence 44 7777654 34455688999999999999999875 3566655433 23455665322 222221 2355
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 005512 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS-GKRIEANRIRALMKRR 574 (693)
Q Consensus 510 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 574 (693)
+..+-.++..+-...|++..|..-.+.+....|.. ..|..|.++-... |+-.+++..+.+..+.
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 45666666777888999999999999999999865 5888888887554 9999999888877654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.67 E-value=4.4 Score=44.60 Aligned_cols=119 Identities=13% Similarity=0.026 Sum_probs=78.2
Q ss_pred HHHHHHHHHHccCChHHHHHHhcccCCCCCcccHHHH----HHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 005512 79 LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM----IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154 (693)
Q Consensus 79 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 154 (693)
....-+++..+...++.|..+-+.-... ...-..+ ..-+.+.|++++|..-|-+-+.. +.| ..+++-+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d--~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLD--EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 3445667777778888888877664433 2222223 33456789999998888765432 222 2355556
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCC
Q 005512 155 GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206 (693)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 206 (693)
.....+..-..+++.+.+.|+. +...-+.|+++|.+.++.++-.+..+...
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 6666666777778888888865 45555788899999988887777666554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.09 Score=40.12 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc---cCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 005512 411 SWSTMISGYGMHGHGREALFLFDQMKAL---IKPD----HITFVSVLSACSHAGLIDEGWECFNSML 470 (693)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 470 (693)
+|+.+...|...|++++|+..|++..+. ..++ ..++..+..++...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666665432 2221 2345556666666666666666666554
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.37 E-value=2.4 Score=39.52 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=88.8
Q ss_pred HHhhCCHHHHHHHHHhcCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-hhHHHHHHHHHHhcC---
Q 005512 388 YVKCGSLMHARKVFDRMKQ--KN----VISWSTMISGYGMHGHGREALFLFDQMKALIKPD-HITFVSVLSACSHAG--- 457 (693)
Q Consensus 388 y~k~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~-~~t~~~ll~~~~~~g--- 457 (693)
+...|++++|...|+.+.. |+ ....-.++.++.+.|++++|...|++..+..+-+ ...+...+.+.+...
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~ 94 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIP 94 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCc
Confidence 4566778888887777763 21 2244456677778888888888888877652111 122222222222111
Q ss_pred ----------CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcC
Q 005512 458 ----------LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW--GSLLGACRIHS 525 (693)
Q Consensus 458 ----------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~--~~ll~~~~~~g 525 (693)
...+|... +..++.-|-.+....+|...+..+. +...- -.+..-|.+.|
T Consensus 95 ~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 95 GILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELR---NRLAEHELYIARFYYKRG 155 (203)
T ss_dssp HHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHCTT
T ss_pred cchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcc
Confidence 11222333 3334444444455555555444431 11111 12345588899
Q ss_pred CHHHHHHHHHHHhhcCCCCch---hHHHHHHHHHhcCChHHHHH
Q 005512 526 NVELAEMAAKALFDLDAENPG---RYVILSNIYASSGKRIEANR 566 (693)
Q Consensus 526 ~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~ 566 (693)
.+..|..-++.+++.-|+.+. ....++..|.+.|..+.|..
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999999987654 45678888999999885543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.30 E-value=1.4 Score=36.61 Aligned_cols=139 Identities=16% Similarity=0.142 Sum_probs=78.6
Q ss_pred hcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 005512 421 MHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500 (693)
Q Consensus 421 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 500 (693)
-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+- -| ...+|++.....
T Consensus 14 ldG~V~qGveii~k~v~S--sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FD----------is~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS--SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FD----------ISKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH--S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-----------GGG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc--CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------chhhcchHHHHH
Confidence 356666667766666542 22223333333222333333344444444321 12 224555555555
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 005512 501 FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577 (693)
Q Consensus 501 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 577 (693)
.+-.++ .+..-....++....+|.-++-.+++..+.+.+..+|....-++++|.+.|...++.+++.+.-++|++
T Consensus 78 C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 78 CYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555543 234445566788888999999999999988776678889999999999999999999999999999874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=2.6 Score=39.55 Aligned_cols=196 Identities=19% Similarity=0.118 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhcC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHH-
Q 005512 378 LALDTAVVDLYVKCGSLMHARKVFDRMK-----QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLS- 451 (693)
Q Consensus 378 ~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~- 451 (693)
..........+...+.+..+...+.... ......+..+...+...++...+...+.........+.........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 4455556666777777777777766653 2344455566666667777778888877776641111222222223
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCC--CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--hhhHHHHHHHHHhcCC
Q 005512 452 ACSHAGLIDEGWECFNSMLRDFGV--APRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD--AGVWGSLLGACRIHSN 526 (693)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g~ 526 (693)
.+...|+++.+...+..... ... ......+......+...++.++|...+.+. ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 67778888888888887743 111 123333444444566778888888887776 22333 5667777777778888
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 527 VELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 527 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
.+.|...+.......|.....+..+...+...|.++++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888875556666666666777788888888777664
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.23 Score=41.84 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=35.6
Q ss_pred cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 005512 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487 (693)
Q Consensus 439 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 487 (693)
..|+..+..+++.+++..|++..|.++.+...+.|+++-+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5677777777777777777777777777777777776666666666654
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.74 Score=42.92 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=31.5
Q ss_pred HHHHHHcCCchhHHHHHhcccC--CC----hhhHHHHHHHHHHcCCchHHHHHHHHhHHC
Q 005512 284 MVMYARCGRMDMARRFFEGILN--KD----LVSWTSMIEAYAQADLPLEALEVYRQMILR 337 (693)
Q Consensus 284 i~~y~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (693)
...+.+.|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...|++.++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566777777777766643 11 123445566677777777777777776654
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=95.18 E-value=6.3 Score=43.73 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=44.0
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC-------hHHHHHHHHHHHHhCCCCChh
Q 005512 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD-------IEFGVKVHKDAVDSGYWSDVF 180 (693)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~ 180 (693)
+...| ++|-.+.|.|++++|.++..+... ........|...+..+....+ -+....-++..++.....|++
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 33445 677789999999999999966554 345667788899999876543 234444555555443333543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.19 Score=41.44 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=69.0
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc----hhHHHHHHHHHhcCCh
Q 005512 488 MLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP----GRYVILSNIYASSGKR 561 (693)
Q Consensus 488 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 561 (693)
++...|++++|++.|.+. .+-| ....||.-..+++-+|+.++|+.-+++++++.-+.. ..|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 566778888888888776 2333 677888888899999999999998898888753322 2466777889999999
Q ss_pred HHHHHHHHHHHhCCC
Q 005512 562 IEANRIRALMKRRGV 576 (693)
Q Consensus 562 ~~a~~~~~~m~~~~~ 576 (693)
+.|+.-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999998877663
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.54 Score=46.82 Aligned_cols=127 Identities=12% Similarity=0.026 Sum_probs=81.5
Q ss_pred chhhhHHHHhhccccHHHHHHHHHHHHH----hcCC-CchhHHHHHHHHHHhhCCHHHHHHHHHhcC-------CCC--H
Q 005512 344 VTFLGVIRACSSLASFQQARTVHGIIIH----CFLG-NQLALDTAVVDLYVKCGSLMHARKVFDRMK-------QKN--V 409 (693)
Q Consensus 344 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~~~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~--~ 409 (693)
..|..+-+.|.-+|+++.+...|+.-+. .|-. .....+..|.++|.-.|+++.|.+.++... .+. .
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455555666667788888777765432 2211 123455567777777888888887776543 232 3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhc------cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 005512 410 ISWSTMISGYGMHGHGREALFLFDQMKAL------IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470 (693)
Q Consensus 410 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 470 (693)
.+..+|...|.-..++++|+..+.+-... ..-....+.+|..++...|.-++|+.+.+.-+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566777777777888888887765432 22234667788888888888888776655543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.08 E-value=4.6 Score=41.23 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=56.1
Q ss_pred HHHHHhCCCCC----ChhhHHHHHHH--HHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005512 499 REFIERMPIRP----DAGVWGSLLGA--CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572 (693)
Q Consensus 499 ~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 572 (693)
..++++.++.| +...-|.|..| ...+|++.++.-...=+.+..| ++.+|..++-......+++||..++..+.
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 34455555544 33455666655 4678999999888888888999 88899999999999999999999998754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.4 Score=50.14 Aligned_cols=157 Identities=22% Similarity=0.211 Sum_probs=78.6
Q ss_pred CCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHH
Q 005512 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370 (693)
Q Consensus 291 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 370 (693)
+++++|+..+.++. ...|.-.++.--+.|.+.+|+.++ +|+...+..+..+|+. .+.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHH
Confidence 44555555444443 223333333344555556665554 5666666655555432 111
Q ss_pred HhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChh--HHHH
Q 005512 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHI--TFVS 448 (693)
Q Consensus 371 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~--t~~~ 448 (693)
+.. .++-..-+|.++|+.++|.+. |...|++.+|+.+-.++.. .-|.. +-..
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~ 1004 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE--GKDELVILAEE 1004 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC--CHHHHHHHHHH
Confidence 111 112223457777777777653 4456677777766665532 11111 1134
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005512 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 449 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (693)
|..-+...++.-+|-++..+... .| .--+..|++...+++|..+....
T Consensus 1005 L~s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1005 LVSRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 55555666666666665554432 12 22345566666666666665544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.2 Score=42.89 Aligned_cols=121 Identities=13% Similarity=0.135 Sum_probs=81.2
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHH---HHHHHhcCCHH
Q 005512 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL---LGACRIHSNVE 528 (693)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l---l~~~~~~g~~~ 528 (693)
.....|+..+|...|+.... -.+-+...--.|+..|...|+.++|..++..+|.+-...-|..+ |....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 45567788888888887765 33334556667788888888888888888888654333333331 22222222222
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 529 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
+.. .++.-...+|+|...-..|+..|...|+.++|.+.+=.+..++
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 222 2334455789999899999999999999999998887776654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.35 Score=42.28 Aligned_cols=68 Identities=22% Similarity=0.302 Sum_probs=35.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH----HhhCCCCChhH
Q 005512 414 TMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSML----RDFGVAPRPEH 481 (693)
Q Consensus 414 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~ 481 (693)
.++..+...|++++|+.+.+++...-+-|...+..++.++...|+...|.++|+.+. ++.|+.|+..+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344455556666666666666655444455566666666666666666666655542 23566676654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.49 Score=46.33 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=68.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhhCCC----CChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCChhhHH
Q 005512 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVA----PRPEHYACMVDMLGRAGKLNEAREFIERM-------PIRPDAGVWG 515 (693)
Q Consensus 447 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~ 515 (693)
.++..+....+-++++++.|+.+.+--.-. ....+|..|...|++..++++|.-+..+. +++.=..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 344555555566777777776665411111 12345677777777777777665544433 2211111122
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHHHhhcC--CCCch----hHHHHHHHHHhcCChHHHHHHHHH
Q 005512 516 -----SLLGACRIHSNVELAEMAAKALFDLD--AENPG----RYVILSNIYASSGKRIEANRIRAL 570 (693)
Q Consensus 516 -----~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~ 570 (693)
.+.-+++..|.+..|.+..+++.++. ..|.. ....++++|...|+.+.|..-++.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 22345677777777777777765532 22322 334677777777777777666654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.17 Score=51.68 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 005512 479 PEHYACMVDMLGRAGKLNEAREFIERM-PIRPDA----GVWGSLLGACRIHSNVELAEMAAKALFDL 540 (693)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 540 (693)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555555666655555553 444442 23555666666666666666666666554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.31 Score=41.07 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=16.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005512 442 DHITFVSVLSACSHAGLIDEGWECFNS 468 (693)
Q Consensus 442 ~~~t~~~ll~~~~~~g~~~~a~~~~~~ 468 (693)
|..++..++.++++.|+++....+.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~ 27 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKS 27 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 345566666666666666666665543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.9 Score=39.23 Aligned_cols=184 Identities=17% Similarity=0.108 Sum_probs=103.0
Q ss_pred HHhhCCHHHHHHHHHhcC--CCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHH
Q 005512 388 YVKCGSLMHARKVFDRMK--QKN-VISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464 (693)
Q Consensus 388 y~k~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 464 (693)
|-..|-..-|+--|.... .|+ +..||-+.--+...|+++.|.+.|+...+.-+....++..-.-++.-.|+++.|.+
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 334455555555555443 343 45677777777888888888888888776322233444333334555678887776
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 005512 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544 (693)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 544 (693)
=+...-+.-.-.|-...|--+ -.+.-+..+|..-+.+--.+.|..-|...|-.+.-..-.+ +.+++++.+-..++
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n 229 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDN 229 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHH---HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccch
Confidence 655544321122222222222 2233456666554433322346666776664443221111 12333333322222
Q ss_pred -------chhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 545 -------PGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 545 -------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
..+|.-|+.-|...|..++|..+|+.....++
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 35788899999999999999999998877543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.59 Score=46.80 Aligned_cols=138 Identities=12% Similarity=0.003 Sum_probs=95.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCH
Q 005512 416 ISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495 (693)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 495 (693)
.+.|.+.|++..|...|++....+. +...-+.++...... .-..++..|.-.|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~------------~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLE------------YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhh------------ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhhH
Confidence 4677888888888888888765311 001111122222111 1233566777888899999
Q ss_pred HHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 005512 496 NEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA-NRIRALMK 572 (693)
Q Consensus 496 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 572 (693)
.+|++.-+.. ...| |+-..--=..++...|+++.|+..|+++++++|+|-.+-.-|+.+-.+..+..+. .++|..|-
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998887776 3333 4555444557888999999999999999999999988888888887777666554 78888886
Q ss_pred hC
Q 005512 573 RR 574 (693)
Q Consensus 573 ~~ 574 (693)
.+
T Consensus 354 ~k 355 (397)
T KOG0543|consen 354 AK 355 (397)
T ss_pred hc
Confidence 54
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.74 E-value=2.6 Score=40.55 Aligned_cols=154 Identities=14% Similarity=0.079 Sum_probs=100.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHH
Q 005512 417 SGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496 (693)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 496 (693)
......|+..+|..+|.......+-+...-..+..++...|+.+.|..++..+-.+ --.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 34567888888888888887764445666777888888899999999888876532 11111112233455666666666
Q ss_pred HHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCchhHHHHHHHHHhcCChHH-HHHHHHHH
Q 005512 497 EAREFIERMPIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLD--AENPGRYVILSNIYASSGKRIE-ANRIRALM 571 (693)
Q Consensus 497 ~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m 571 (693)
+..++-++....| |...--.+...+...|+.+.|.+.+-.+++.+ -.|...-..|+.++.-.|.-+. +.+.+++|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 6566666654456 45555566677888899998888777776654 3466677778888877774443 33444433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=1.3 Score=45.71 Aligned_cols=117 Identities=10% Similarity=0.041 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCC
Q 005512 459 IDEGWECFNSMLRDFGVAPR-PEHYACMVDMLGR---------AGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSN 526 (693)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 526 (693)
.+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. ...| |+.....+..+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 45677777777643345554 3334433333221 22344556665554 3334 55555555555666677
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 527 VELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 527 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
.+.|...|+++..++|+.+.+|...++...-+|+.++|.+.+++..+..
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 8899999999999999888888888888888999999998888865543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.85 Score=38.94 Aligned_cols=59 Identities=20% Similarity=0.159 Sum_probs=40.0
Q ss_pred HHhhcCCHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 005512 488 MLGRAGKLNEAREFIERM----PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546 (693)
Q Consensus 488 ~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 546 (693)
...+.|++++|.+.|+.+ |..| ....-..|+.++.+.+++++|...+++.+++.|.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344667777777777766 2222 2334455667788888888888888888888886553
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.7 Score=37.60 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=41.2
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCch
Q 005512 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227 (693)
Q Consensus 148 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 227 (693)
..++..+...+.......+++.+++.+ ..+...+|.|+..|++.+ .++....++. ..+......++..|.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 344444444455555555555555554 245556666666666543 2333333331 122233334455555555555
Q ss_pred HHHHHHHHH
Q 005512 228 EGLLLFKRM 236 (693)
Q Consensus 228 ~A~~~~~~m 236 (693)
++.-++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 555555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.63 Score=48.82 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 005512 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525 (693)
Q Consensus 446 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 525 (693)
...++.-+-+.|..+.|+++-..-.. -.+...++|+++.|.++.++.. +...|..|......+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcC
Confidence 44555555556666666555322211 1344456666666666655542 5556666666666666
Q ss_pred CHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 526 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
+++.|++.+++. .-+..|+-.|.-.|+.+.-.++-+....+|
T Consensus 362 ~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 362 NIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp BHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 666666666654 234455556666666655555555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=2.5 Score=43.64 Aligned_cols=144 Identities=11% Similarity=0.059 Sum_probs=95.5
Q ss_pred ChHHHHHHHHHHHhc--cCCCh-hHHHHHHHHHHh---------cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh
Q 005512 424 HGREALFLFDQMKAL--IKPDH-ITFVSVLSACSH---------AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491 (693)
Q Consensus 424 ~~~~A~~~~~~m~~~--~~p~~-~t~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 491 (693)
..+.|+.+|.+.... ..|+. ..|..+..++.. ..+..+|.++-+...+ --.-|......+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 346788888888733 66654 334444333221 2234566666666664 334466667777777788
Q ss_pred cCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch--hHHHHHHHHHhcCChHHHHHH
Q 005512 492 AGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG--RYVILSNIYASSGKRIEANRI 567 (693)
Q Consensus 492 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~ 567 (693)
.|+++.|...|++. ...|| ..+|......+.-.|+.++|.+.+++.++++|.... +....+++|+..+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 88899999999988 45665 455655555667789999999999999999996543 3334555777655 5666666
Q ss_pred HHH
Q 005512 568 RAL 570 (693)
Q Consensus 568 ~~~ 570 (693)
+-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 643
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.08 E-value=3.7 Score=38.29 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=45.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-----C--CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCCchhHH
Q 005512 482 YACMVDMLGRAGKLNEAREFIERMP-----I--RPDA-GVWGSLLGACRIHSNVELAEMAAKALFDL----DAENPGRYV 549 (693)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m~-----~--~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~ 549 (693)
+......|.+..+++||-..|.+-. . -|+. ..+-+.|-.+.-..|+..|+..++.--+. +|++..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 3444455666666666655554431 0 1111 11223333344445677777777764432 355566666
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 005512 550 ILSNIYASSGKRIEANRIRA 569 (693)
Q Consensus 550 ~l~~~~~~~g~~~~a~~~~~ 569 (693)
.|+.+|- .|+.+++.++..
T Consensus 233 nLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHhc-cCCHHHHHHHHc
Confidence 6666663 566666655543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.97 E-value=1.7 Score=45.60 Aligned_cols=149 Identities=14% Similarity=0.103 Sum_probs=77.6
Q ss_pred hCCCHHHH------HHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHH
Q 005512 191 KCGRVDVC------RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV 264 (693)
Q Consensus 191 ~~g~~~~A------~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~ 264 (693)
-.|+++++ .+++..++ ....+.++.-+-+.|.++.|+++-.+-.
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~---~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------------------------- 322 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP---KDQGQSIARFLEKKGYPELALQFVTDPD--------------------------- 322 (443)
T ss_dssp HTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HH---------------------------
T ss_pred HcCChhhhhhhhhhhhhcccCC---hhHHHHHHHHHHHCCCHHHHHhhcCChH---------------------------
Confidence 35666663 33333332 2346777777778888888887644321
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcc
Q 005512 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344 (693)
Q Consensus 265 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 344 (693)
.-.+...++|+++.|.++-++.. +...|..|.....++|+.+-|.+.|.+..+
T Consensus 323 -----------------~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------- 375 (443)
T PF04053_consen 323 -----------------HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-------- 375 (443)
T ss_dssp -----------------HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------
T ss_pred -----------------HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------
Confidence 12344456667777766665554 445677777777777777777777666432
Q ss_pred hhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHh
Q 005512 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403 (693)
Q Consensus 345 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 403 (693)
+..++-.+...|+.+.-..+.......|- +|.....+.-.|+.++..+++.+
T Consensus 376 -~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 376 -FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344444445555555555444444331 23333334445666665555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.86 E-value=1.6 Score=42.44 Aligned_cols=152 Identities=12% Similarity=0.090 Sum_probs=86.5
Q ss_pred hhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHH----HHHHHHhcCCHHHH
Q 005512 390 KCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVS----VLSACSHAGLIDEG 462 (693)
Q Consensus 390 k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~----ll~~~~~~g~~~~a 462 (693)
..|+..+|...++++.+ .|..+|+--=.+|..+|+.+.-...++++.....||...|.. +.-++...|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34666666666666653 467777777777777888777777777776554444432222 22244566777777
Q ss_pred HHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHH
Q 005512 463 WECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERMPIRPD-------AGVWGSLLGACRIHSNVELAEMAA 534 (693)
Q Consensus 463 ~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~ 534 (693)
.+.-++..+ +.+ |.-.-.++...+...|++.++.+++.+-...-+ ..-|...+ .+...+.++.|+++|
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHHH
Confidence 777666543 222 233334556666777788888887766521111 01111111 123446777777777
Q ss_pred HHHh--hcCCCCc
Q 005512 535 KALF--DLDAENP 545 (693)
Q Consensus 535 ~~~~--~~~p~~~ 545 (693)
++-+ +++.+|.
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 6533 3444454
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.83 E-value=6.1 Score=37.40 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCchh---HHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 518 LGACRIHSNVELAEMAAKALFDLDAENPGR---YVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 518 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
..-|.+.|.+..|..-++.+++.-|+.+.+ +..+..+|.+.|..++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 355788999999999999999887665544 45677889999999999888776654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.34 Score=45.68 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=68.6
Q ss_pred HHHHHhcccC--CCCCcccHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccC---------
Q 005512 95 HAFSLFSSVS--DSCDLFLWNVMIRAFVDN-----RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR--------- 158 (693)
Q Consensus 95 ~A~~~f~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~--------- 158 (693)
..++.|...+ ++ |-.+|-+.+..+... ++.+=-...++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~R-dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKR-DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred chhhhhhccCcccc-cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 3455666665 45 777888877777543 444445556778888898889999998888765432
Q ss_pred -------ChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCC
Q 005512 159 -------DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194 (693)
Q Consensus 159 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 194 (693)
+-+-+..++++|...|+-||..+-..|++++++.|-
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 123466777777777777777777777777776664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.70 E-value=6.1 Score=36.95 Aligned_cols=194 Identities=18% Similarity=0.138 Sum_probs=124.7
Q ss_pred hhHHHHhhccccHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--CCH-hHHHHHHH-HHHh
Q 005512 347 LGVIRACSSLASFQQARTVHGIIIHC-FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--KNV-ISWSTMIS-GYGM 421 (693)
Q Consensus 347 ~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~ 421 (693)
......+...+.+..+...+...... ........+..+...+...+....+...+..... ++. ..+..... .+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 33333444444444444444444332 2233444455555666666777777777777663 221 22333333 6788
Q ss_pred cCChHHHHHHHHHHHhccCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHH
Q 005512 422 HGHGREALFLFDQMKALIKP----DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLN 496 (693)
Q Consensus 422 ~g~~~~A~~~~~~m~~~~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 496 (693)
.|+.+.|...|.+... ..| ....+......+...++.+.+...+....+ .... ....+..+...+...++++
T Consensus 143 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 143 LGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred cCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHH
Confidence 8999999999988855 444 234444444456778889999999988875 3333 4677788888888889999
Q ss_pred HHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 005512 497 EAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAE 543 (693)
Q Consensus 497 ~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 543 (693)
+|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999988877 33444 445555555555677899999999999988886
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.85 Score=44.25 Aligned_cols=159 Identities=12% Similarity=-0.005 Sum_probs=116.6
Q ss_pred hcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHH----HHHHHHhhcCCHH
Q 005512 421 MHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA----CMVDMLGRAGKLN 496 (693)
Q Consensus 421 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~ 496 (693)
-+|+..+|-..++++.+..+.|...+.-.=.+|...|+.+.-+..++++.. ...++...|. .+..++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 378888999999999887888888888888999999999999999988875 4466665554 3445566899999
Q ss_pred HHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----chhHHHHHHHHHhcCChHHHHHHHHH
Q 005512 497 EAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN----PGRYVILSNIYASSGKRIEANRIRAL 570 (693)
Q Consensus 497 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 570 (693)
+|.+.-++. .+.| |.-.-.+.......+|+.+++.+..++-...-.+. ...|-..+-.+...+.++.|.++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999999887 4443 44444455566777899999998877654332211 22345566677788999999999998
Q ss_pred HHhCCCccCCc
Q 005512 571 MKRRGVKKITG 581 (693)
Q Consensus 571 m~~~~~~~~~~ 581 (693)
-.-+...++.+
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 65544555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.53 E-value=1.3 Score=45.79 Aligned_cols=146 Identities=15% Similarity=0.030 Sum_probs=81.1
Q ss_pred cCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 005512 422 HGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501 (693)
Q Consensus 422 ~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 501 (693)
..+...-+++-++..+ +.||-.+...++ +--....+.++.+++++..+. |- ..+..- ......|. ..+.
T Consensus 181 ERnp~aRIkaA~eALe-i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~lg~s-~~~~~~g~---~~e~ 249 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE-INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASLGKS-QFLQHHGH---FWEA 249 (539)
T ss_pred cCCHHHHHHHHHHHHH-hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhhchh-hhhhcccc---hhhh
Confidence 3344444444444444 556544433332 223344577888888877652 10 000000 00001111 1111
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 005512 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE--NPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578 (693)
Q Consensus 502 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 578 (693)
+.+-...|-..+=..+..++++.|+.++|++.++.+++..|. +..+...|+..+...+.+.++..++.+-.+-...+
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 111111222334445667778889999999999999887764 45577889999999999999999888865433333
|
The molecular function of this protein is uncertain. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.13 Score=31.63 Aligned_cols=32 Identities=19% Similarity=0.073 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 005512 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAE 543 (693)
Q Consensus 512 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 543 (693)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667777777788888888888888887775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.37 E-value=2.8 Score=44.69 Aligned_cols=115 Identities=17% Similarity=0.106 Sum_probs=68.5
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHH-HHHHHHhhcCCHHHHHHHHHhCCC-C-----CChhhHHHHHHHHHhcCCHH
Q 005512 456 AGLIDEGWECFNSMLRDFGVAPRPEHYA-CMVDMLGRAGKLNEAREFIERMPI-R-----PDAGVWGSLLGACRIHSNVE 528 (693)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~-~-----p~~~~~~~ll~~~~~~g~~~ 528 (693)
....+.+.++++.+.+. -|+...|. .-...+...|++++|.+.|++.-. + -....+--+.-.+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34566677777777642 24433332 223455567777777777775410 1 11222233344456677888
Q ss_pred HHHHHHHHHhhcCCCCchhHH-HHHHHHHhcCCh-------HHHHHHHHHHHh
Q 005512 529 LAEMAAKALFDLDAENPGRYV-ILSNIYASSGKR-------IEANRIRALMKR 573 (693)
Q Consensus 529 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 573 (693)
+|...+.++.+...-+...|. ..+-.|...|+. ++|.++|.+...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888876654444443 345556777877 777888877655
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.29 E-value=4.9 Score=34.66 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 005512 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA-GKLNEAREFIERMPIRPDAGVWGSLLGACR 522 (693)
Q Consensus 445 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 522 (693)
....+++.|.+.+.++++..++..+.. +...++.+... ++.+.|.+++.+- .+...|..++..+.
T Consensus 71 d~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 71 DIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred CHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 334455555556666666555554321 11222333333 6677777777663 25567777776654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.98 Score=42.94 Aligned_cols=93 Identities=15% Similarity=0.183 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHH
Q 005512 412 WSTMISGYGMHGHGREALFLFDQMKALIKPD---HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP-EHYACMVD 487 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~ 487 (693)
|+.-+.. .+.|++.+|...|...++..+-+ ...+..|..++...|++++|..+|..+.++++-.|.. +.+-.|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4443332 34455666666666665542222 2335556666666666666666666666554444432 44445555
Q ss_pred HHhhcCCHHHHHHHHHhC
Q 005512 488 MLGRAGKLNEAREFIERM 505 (693)
Q Consensus 488 ~~~~~g~~~~A~~~~~~m 505 (693)
...+.|+.++|...+++.
T Consensus 224 ~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 224 SLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 555555555555555544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.21 Score=30.63 Aligned_cols=32 Identities=28% Similarity=0.194 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 005512 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544 (693)
Q Consensus 513 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 544 (693)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666777777777777777777777754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.20 E-value=2.4 Score=45.23 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHhcCC--CCHhHHHHHH-HHHHhcCChHHHHHHHHHHHhc----cCCChhHHHHHHHHHHhcCCHHHHHH
Q 005512 392 GSLMHARKVFDRMKQ--KNVISWSTMI-SGYGMHGHGREALFLFDQMKAL----IKPDHITFVSVLSACSHAGLIDEGWE 464 (693)
Q Consensus 392 g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~----~~p~~~t~~~ll~~~~~~g~~~~a~~ 464 (693)
...+.|.++++.+.. |+...|.-.- ..+...|+.++|++.|++.... -+.....+--+...+.-..+|++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 445666666666654 5555554332 3344456666666666654321 12223334444445555566666666
Q ss_pred HHHHhHH
Q 005512 465 CFNSMLR 471 (693)
Q Consensus 465 ~~~~~~~ 471 (693)
.|..+.+
T Consensus 327 ~f~~L~~ 333 (468)
T PF10300_consen 327 YFLRLLK 333 (468)
T ss_pred HHHHHHh
Confidence 6666654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=2.2 Score=37.36 Aligned_cols=79 Identities=15% Similarity=0.045 Sum_probs=30.4
Q ss_pred hCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005512 391 CGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFN 467 (693)
Q Consensus 391 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 467 (693)
.|++++|..+|.-+.- -|..-|..|..++-..+++++|+..|........-|+..+.....++...|+.+.|+..|+
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~ 129 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFE 129 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHH
Confidence 3444444444443321 1233333344444444444444444443332212222333333334444444444444444
Q ss_pred Hh
Q 005512 468 SM 469 (693)
Q Consensus 468 ~~ 469 (693)
..
T Consensus 130 ~a 131 (165)
T PRK15331 130 LV 131 (165)
T ss_pred HH
Confidence 33
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.79 Score=43.55 Aligned_cols=58 Identities=16% Similarity=0.053 Sum_probs=34.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 517 LLGACRIHSNVELAEMAAKALFDLDAEN---PGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 517 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
|..++...|+++.|...|..+.+-.|+. |..+.-|+....+.|+.++|...++++.++
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4455555666666666666665554432 344555666666667777777777666654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.58 E-value=19 Score=39.59 Aligned_cols=49 Identities=20% Similarity=0.229 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchH
Q 005512 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228 (693)
Q Consensus 180 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 228 (693)
.++..+|+.+.-.|++++|-...-.|...+..-|.--+..+...++...
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 4566777777777888888777777777777777777776666665543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=92.35 E-value=13 Score=37.91 Aligned_cols=72 Identities=15% Similarity=0.071 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCchhHHHHHhcccCC---Chh----hHHHHHHHHHH---cCCchHHHHHHHHhHHCCcccCcchhhhHHH
Q 005512 282 AAMVMYARCGRMDMARRFFEGILNK---DLV----SWTSMIEAYAQ---ADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351 (693)
Q Consensus 282 ~li~~y~~~g~~~~A~~~f~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 351 (693)
.|+-.|-...+++.-.++.+.+... +.. .--...-++.+ .|+.++|++++..+....-.++..||..+-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688888888888888887553 111 11123345556 7889999999988766666677777765554
Q ss_pred Hh
Q 005512 352 AC 353 (693)
Q Consensus 352 a~ 353 (693)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.12 E-value=13 Score=36.57 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=41.9
Q ss_pred CCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHh
Q 005512 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353 (693)
Q Consensus 274 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 353 (693)
+++..+....+.++.+.|+. .|...+-+..+.+. .....+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 45666666777777777764 34443333333222 233566667777764 577777777653 33555554444444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.3 Score=36.70 Aligned_cols=53 Identities=23% Similarity=0.168 Sum_probs=24.8
Q ss_pred HHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 005512 419 YGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471 (693)
Q Consensus 419 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 471 (693)
.+..|+.+.|++.|.+.....+-+...|+.-..++.-.|+.++|+.=+.+..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555544443333444444444444444555444444444443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.94 E-value=11 Score=41.97 Aligned_cols=85 Identities=9% Similarity=-0.052 Sum_probs=38.3
Q ss_pred HHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHh---h
Q 005512 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVK---C 391 (693)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~y~k---~ 391 (693)
..+.-.|+++.|++.+.+ ..+...+.+.+...+.-+.-+.-.+... ..+.... -.+..--+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 345667889999988876 3344566677766665544332222111 1111110 01111345567777775 3
Q ss_pred CCHHHHHHHHHhcC
Q 005512 392 GSLMHARKVFDRMK 405 (693)
Q Consensus 392 g~~~~A~~~~~~~~ 405 (693)
.+..+|.+.|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 46677777766554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.62 Score=41.73 Aligned_cols=89 Identities=15% Similarity=0.032 Sum_probs=68.4
Q ss_pred HHhhcCCHHHHHHHHHhC----CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 005512 488 MLGRAGKLNEAREFIERM----PIRP---DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560 (693)
Q Consensus 488 ~~~~~g~~~~A~~~~~~m----~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 560 (693)
-+.+.|++++|..-|... |..+ ..+.|..-..+..+.+..+.|+.-..++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 455677777777776654 2111 233444445667888999999999999999999887788888899999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 005512 561 RIEANRIRALMKRRGV 576 (693)
Q Consensus 561 ~~~a~~~~~~m~~~~~ 576 (693)
+++|.+-++++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999988654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.70 E-value=10 Score=35.97 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=37.7
Q ss_pred HHcCCchhHHHHHhcccCCCh------hhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHh
Q 005512 288 ARCGRMDMARRFFEGILNKDL------VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353 (693)
Q Consensus 288 ~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 353 (693)
.+.|++++|.+.|+.+....+ .+--.++-++-+.+++++|+..+++....-..-...-|..-|.+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 356777777777777754321 223344556677777777777777766553322333444444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.64 E-value=6.5 Score=33.70 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=55.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC
Q 005512 417 SGYGMHGHGREALFLFDQMKALIKPD---HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493 (693)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 493 (693)
....+.|++++|.+.|+.+....+.. ...-..++.++.+.+++++|...++..++-+--.|++ .|...+.+++.-.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHH
Confidence 33445666666666666666652222 2345556666666666666666666666533333332 2333333333222
Q ss_pred CHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 005512 494 KLNEAREFIERM-PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 494 ~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 545 (693)
..+.+ |..+ ..+ +..+....|...|+.+++.-|++.
T Consensus 97 ~~~~~---~~~~~~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDEGS---LQSFFRSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HhhhH---Hhhhcccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 21111 1111 111 112235567777788888888764
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.52 E-value=17 Score=37.88 Aligned_cols=97 Identities=12% Similarity=0.172 Sum_probs=48.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCC--hhhHHHHHHHHHhc
Q 005512 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI--RPD--AGVWGSLLGACRIH 524 (693)
Q Consensus 449 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~--~~~~~~ll~~~~~~ 524 (693)
+..++.+.|+.++|.+.++++.+++....+..+...|+..|...+.+.++..++.+... -|. ...|++.+-..+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 34444455556666655555554322222233444556666666666666666555421 122 23344433222222
Q ss_pred CC---------------HHHHHHHHHHHhhcCCCCc
Q 005512 525 SN---------------VELAEMAAKALFDLDAENP 545 (693)
Q Consensus 525 g~---------------~~~a~~~~~~~~~~~p~~~ 545 (693)
++ -..|.++..++.+.+|.-+
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 22 1235677888888877544
|
The molecular function of this protein is uncertain. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.43 E-value=7.6 Score=32.53 Aligned_cols=63 Identities=13% Similarity=0.118 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC
Q 005512 412 WSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 475 (693)
...-+......|+-+.-.+++..+...-++++.....+..||.+.|+..++.+++.++.++ |+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3445566677777777777777765445667777777888888888888888888777763 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.43 Score=29.84 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 005512 547 RYVILSNIYASSGKRIEANRIRALMK 572 (693)
Q Consensus 547 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 572 (693)
++..|+++|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788999999999999999998854
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.84 E-value=18 Score=35.65 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=31.5
Q ss_pred CCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCc----hHHHHHHHHhH
Q 005512 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP----LEALEVYRQMI 335 (693)
Q Consensus 274 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~ 335 (693)
.+|..+....+..+.+.|..+-...+..-+..+|...-...+.++.+.|+. .+++..+..+.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~ 99 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLA 99 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH
Confidence 445555555555555555433333333323344555555555666666653 34566665553
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.65 E-value=22 Score=36.36 Aligned_cols=148 Identities=11% Similarity=0.001 Sum_probs=77.4
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcc-CC---ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC--hh
Q 005512 407 KNVISWSTMISGYGMHGHGREALFLFDQMKALI-KP---DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR--PE 480 (693)
Q Consensus 407 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~ 480 (693)
....+|..+...+.+.|+++.|...+.++.... .+ +......-....-..|+-.+|...++...+. .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345578888888888888888888888876631 11 3334444455666678888888877777652 11111 11
Q ss_pred HHHHHHHHHhhcCCHHHHHHH-HHhCCCCCChhhHHHHHHHHHh------cCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 005512 481 HYACMVDMLGRAGKLNEAREF-IERMPIRPDAGVWGSLLGACRI------HSNVELAEMAAKALFDLDAENPGRYVILSN 553 (693)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 553 (693)
....+...+.. ..+..... ........-..++..+..-+.. .++.+++...|+.+.++.|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 0000000001112222222222 378888999999999999987777777776
Q ss_pred HHHh
Q 005512 554 IYAS 557 (693)
Q Consensus 554 ~~~~ 557 (693)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 6654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.7 Score=41.20 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=73.2
Q ss_pred HHHHHhccc--CCChhhHHHHHHHHHHc-----CCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccc-----------
Q 005512 296 ARRFFEGIL--NKDLVSWTSMIEAYAQA-----DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA----------- 357 (693)
Q Consensus 296 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~----------- 357 (693)
.++.|...+ ++|..+|-+++..+... +..+=....++.|.+-|+.-|..+|..+|+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666665 67888888888877654 456666677888999999999999999998775532
Q ss_pred -----cHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCC
Q 005512 358 -----SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393 (693)
Q Consensus 358 -----~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~ 393 (693)
+-+-+..++++|...|+-||..+-..|++.+++.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223467777888888888888888888888877664
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.07 E-value=9.9 Score=33.30 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=10.7
Q ss_pred HHhCCCHHHHHHHhccCCC
Q 005512 189 YGKCGRVDVCRQLFDEMPE 207 (693)
Q Consensus 189 ~~~~g~~~~A~~~f~~m~~ 207 (693)
+.+.|++++|.++|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 4455556666666655544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.21 E-value=1.4 Score=28.95 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 411 SWSTMISGYGMHGHGREALFLFDQMKA 437 (693)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 437 (693)
.|..+...|.+.|++++|+++|++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555566666666666665555
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.14 E-value=51 Score=38.43 Aligned_cols=161 Identities=18% Similarity=0.231 Sum_probs=83.7
Q ss_pred CCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHH-HHHHHh
Q 005512 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVC-RVVVDN 271 (693)
Q Consensus 193 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~-~~~~~~ 271 (693)
+++++|+.-+.++. ...|.-.++.--++|.+.+|+.++. |+....-..| .++ +.+.+.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~----------~~ya~hL~~~ 952 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIY----------EAYADHLREE 952 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHH----------HHHHHHHHHh
Confidence 56777877776665 3355566666677888999988864 4433331100 111 111111
Q ss_pred CCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcch--hhhH
Q 005512 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT--FLGV 349 (693)
Q Consensus 272 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~l 349 (693)
. -++--.-+|.++|+.++|.+. |...|++.+|+.+-.+|... -+... --.+
T Consensus 953 ~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L 1005 (1265)
T KOG1920|consen 953 L------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSEG---KDELVILAEEL 1005 (1265)
T ss_pred c------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHH
Confidence 1 112233466677777776654 44567777777777665321 11111 1233
Q ss_pred HHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCH
Q 005512 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409 (693)
Q Consensus 350 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~ 409 (693)
..-+...++.-+|-++..+.... ..-.+..|++...+++|..+-....+.|.
T Consensus 1006 ~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~~d~ 1057 (1265)
T KOG1920|consen 1006 VSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKRDDI 1057 (1265)
T ss_pred HHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcccchH
Confidence 44444455554444444333221 12345567777777777777655554443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.92 E-value=42 Score=37.15 Aligned_cols=20 Identities=5% Similarity=-0.160 Sum_probs=14.4
Q ss_pred HHHHHHhCCHHHHHHHHHhc
Q 005512 12 QQKLTKFCHLRQQWRLFFSA 31 (693)
Q Consensus 12 ~~~~~~~~~~~~A~~~~~~~ 31 (693)
+..+.+.+.+++|++.-+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~ 382 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKAS 382 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhc
Confidence 45677778888888877653
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.74 Score=28.10 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 005512 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAE 543 (693)
Q Consensus 513 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 543 (693)
+|..+...+...|+.++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555556667777777777777777776663
|
... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.56 E-value=0.73 Score=28.80 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 005512 513 VWGSLLGACRIHSNVELAEMAAKALFDL 540 (693)
Q Consensus 513 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 540 (693)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3666777788888888888888875543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.33 E-value=4.6 Score=35.55 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHcCCchhHHHHHhcccC
Q 005512 278 SLQNAAMVMYARCGRMDMARRFFEGILN 305 (693)
Q Consensus 278 ~~~~~li~~y~~~g~~~~A~~~f~~~~~ 305 (693)
....+|.-+-.|.|++.+|.+.|..+..
T Consensus 168 sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 168 SAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3445555556666777777777766644
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.18 E-value=29 Score=35.41 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=55.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA----ENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 509 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
....+|..+...++++|+++.|...+.++.+.++ ..+.+...-+......|+-.+|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3566888999999999999999999999988653 24566777789999999999999999888773
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.10 E-value=6.4 Score=41.69 Aligned_cols=100 Identities=13% Similarity=0.083 Sum_probs=54.6
Q ss_pred HcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHH
Q 005512 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368 (693)
Q Consensus 289 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 368 (693)
+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..++-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 445555555543332 2344566666666666666666666655432 33455555555555544444444
Q ss_pred HHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC
Q 005512 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405 (693)
Q Consensus 369 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 405 (693)
..+.|.. |...-+|...|+++++.+++.+-.
T Consensus 718 ~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 718 AKKQGKN------NLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHhhccc------chHHHHHHHcCCHHHHHHHHHhcC
Confidence 4444421 222334667788888888776653
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.06 E-value=2.6 Score=36.85 Aligned_cols=52 Identities=21% Similarity=0.093 Sum_probs=30.5
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 523 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
..++.+.++.++..+.-+.|..+..-..-++.+...|+|.+|.++++.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4455566666666666666655555555555566666666666666665444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.05 E-value=13 Score=32.93 Aligned_cols=133 Identities=9% Similarity=0.004 Sum_probs=75.4
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCC--CHHHHHHHhccCC
Q 005512 129 LQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG--RVDVCRQLFDEMP 206 (693)
Q Consensus 129 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~m~ 206 (693)
++..+.+.+.+++|+...+..+++.+.+.|.+..-.+ +++.++-+|.......+-.+.... -..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3445555667778888888888888888777554433 344444444443333222222111 1223444444443
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHH
Q 005512 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVD 270 (693)
Q Consensus 207 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~ 270 (693)
..+..++..+...|++-+|+.+.++.... ..++...|+.+....++...-..++.....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~-~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV-DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc-ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24566777888888888888887765322 134445556666666666555555555544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.72 E-value=21 Score=33.36 Aligned_cols=82 Identities=11% Similarity=0.027 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHhC-----CCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHhhcCCCCchh------HHHHHHHHHhc
Q 005512 493 GKLNEAREFIERM-----PIRPDAGVWGSLLGA---CRIHSNVELAEMAAKALFDLDAENPGR------YVILSNIYASS 558 (693)
Q Consensus 493 g~~~~A~~~~~~m-----~~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~~~~------~~~l~~~~~~~ 558 (693)
.++++|+..|+.. +.+.+...-..++.. -.+.+++.+|+.+|+++.....+++.. |..-+-+|--+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4455555555554 112233333344432 345678899999999887655544322 22222222222
Q ss_pred -CChHHHHHHHHHHHhC
Q 005512 559 -GKRIEANRIRALMKRR 574 (693)
Q Consensus 559 -g~~~~a~~~~~~m~~~ 574 (693)
++.-.+.+.+++-.+.
T Consensus 208 ~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQEL 224 (288)
T ss_pred cccHHHHHHHHHHHHhc
Confidence 4555555555555543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.43 E-value=1.6 Score=42.03 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=61.8
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCCCCCcc-----cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHH
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLF-----LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFP 148 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 148 (693)
+....+...++..-....+++++...+-.+.+.|+.. +-.+.++.+. .-++++++.++..=++.|+-||.++++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHH
Confidence 4444455555555555567777777766665543221 1112233222 235667777777777777778888888
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhC
Q 005512 149 FVLKACGYLRDIEFGVKVHKDAVDSG 174 (693)
Q Consensus 149 ~ll~~~~~~~~~~~a~~~~~~~~~~g 174 (693)
.+|..+.+.+++.+|.++.-.|+...
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888777777777777777666554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.30 E-value=1.4 Score=42.81 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=78.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CChhhHHHHHHHHHhcC
Q 005512 449 VLSACSHAGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERM-PIR-PDAGVWGSLLGACRIHS 525 (693)
Q Consensus 449 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g 525 (693)
-.+-|.+.|.+++|+..+...+ .+.| +..++..-..+|.+..++..|..-.+.. .+. .-.-.|.--..+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3567888999999999998776 4455 7888888888999999988877665544 111 11223444444445568
Q ss_pred CHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 005512 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569 (693)
Q Consensus 526 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 569 (693)
+.++|.+-++.+++++|++. -|-..|++.....|+.-+.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIATK 219 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHhh
Confidence 88999999999999999854 34455566565655554443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.16 E-value=8.9 Score=34.67 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC------hhHH
Q 005512 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDH--ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR------PEHY 482 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~ 482 (693)
+..+..-|++.|+.++|++.|.++... ..|.. ..+..++..+...+++..+.....++..-.....+ ..+|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 333444444444445555555444443 22222 22344444555555555555444444321111011 1223
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC
Q 005512 483 ACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~m 505 (693)
..|. +...|++.+|-+.|-+.
T Consensus 119 ~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 119 EGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHhchHHHHHHHHHcc
Confidence 3322 23457788877777665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=87.10 E-value=34 Score=34.11 Aligned_cols=191 Identities=11% Similarity=0.074 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHcCCchhHHHHH-------hcccCC--ChhhHHHHHHHHHHcCCchHHHHHHHHhHH-CCcccC---cch
Q 005512 279 LQNAAMVMYARCGRMDMARRFF-------EGILNK--DLVSWTSMIEAYAQADLPLEALEVYRQMIL-RRVLPD---SVT 345 (693)
Q Consensus 279 ~~~~li~~y~~~g~~~~A~~~f-------~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t 345 (693)
++..+..+.++.|.++++...- .+..+. -..+|-.+..++-+..++.+++.+-+.-.. .|..|. ...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 3445556666666666654321 111111 123455566666665566666655443322 122331 122
Q ss_pred hhhHHHHhhccccHHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC-------CCCHh---
Q 005512 346 FLGVIRACSSLASFQQARTVHGIIIHCF-----LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-------QKNVI--- 410 (693)
Q Consensus 346 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~-----~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~~~--- 410 (693)
..++-.+....+.++++.+.|+.+.+.. ......++-+|...|.+..++++|.-...+.. -.|..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 2345566777778888888887776632 12235677788888888888887765444332 12322
Q ss_pred ---HHHHHHHHHHhcCChHHHHHHHHHHHhc--cCCChhH----HHHHHHHHHhcCCHHHHHHHHHHh
Q 005512 411 ---SWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHIT----FVSVLSACSHAGLIDEGWECFNSM 469 (693)
Q Consensus 411 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~~~t----~~~ll~~~~~~g~~~~a~~~~~~~ 469 (693)
+..-|.-++...|...+|.+..++..+. ..-|..+ ...+.+.|...|+.+.|+.-++.+
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1122344566667777777776665444 3333333 344556666777777776666554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.51 E-value=1.9 Score=26.26 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 411 SWSTMISGYGMHGHGREALFLFDQMKA 437 (693)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 437 (693)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.39 E-value=3 Score=35.74 Aligned_cols=54 Identities=17% Similarity=-0.020 Sum_probs=41.7
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 523 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
..++.++++.++..+.-+.|+.+..-..-++.+...|+|+||.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 367777888888888788887777777777788888888888888888776653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.93 E-value=3.5 Score=39.90 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 513 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
+...++..+...|+.+.+...+++++..+|-+...|..|+.+|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3344555566667777777777777777777777777777777777777777777777665
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.84 E-value=35 Score=33.01 Aligned_cols=56 Identities=16% Similarity=-0.012 Sum_probs=51.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 518 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
...|...|.+.+|.++.++++.++|-+...+-.|...|+..|+--+|.+-++.+.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 46789999999999999999999999999999999999999999999888888754
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.77 E-value=8.5 Score=37.37 Aligned_cols=60 Identities=15% Similarity=0.321 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKA 437 (693)
Q Consensus 378 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 437 (693)
..++..++..+..+|+.+.+.+.+++... -|...|..++.+|.+.|+...|+..|+++..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34556677777777777777777766653 3556677777777777777777777776654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.73 E-value=55 Score=35.12 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHhccCCC--CCcc-hHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH-HHH----
Q 005512 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVV-TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI-LNA---- 251 (693)
Q Consensus 180 ~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-l~~---- 251 (693)
..++.||.---...+++.++.+++.+.. |... -|-....-=.+.|..+.+.++|++-+.. + |-+..+ +.-
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-i-p~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-I-PLSVDLWLSYLAFL 123 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-h-hhHHHHHHHHHHHH
Confidence 3445555433333344555555555543 3222 2333333334556666666666665543 1 211111 222
Q ss_pred HHhcCCchHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHHcCCchhHHHHHhcccCCCh
Q 005512 252 MACVRKVSEADDVCRVVVDN-GLD-LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308 (693)
Q Consensus 252 ~~~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~ 308 (693)
+...++.+.....++.+... |.+ .+...|-..+..-..+++......+++++.+-..
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~ 182 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL 182 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh
Confidence 22334444444444444432 221 1223344444444445555555555555544333
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.66 E-value=44 Score=33.12 Aligned_cols=139 Identities=6% Similarity=0.042 Sum_probs=72.9
Q ss_pred ChhhHHHHHHHhcC-cCcH----HHHHHHHHHhccCCCCCHhHHHHHHHHHHc--c----CChHHHHHHhcccCCC----
Q 005512 42 DPETCISSIKQCQT-LQSL----KTLHAFTLRSRFYHHHDLFLVTNLVSQYAS--L----GSISHAFSLFSSVSDS---- 106 (693)
Q Consensus 42 ~~~~~~~ll~~~~~-~~~~----~~~~~~~~~~g~~~~~~~~~~~~li~~y~~--~----g~~~~A~~~f~~~~~~---- 106 (693)
...+++++|..-.. .... ..++..+.+.|+ ..+.+++-+-.-.... . -....|..+|+.|...
T Consensus 59 ~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gF--k~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL 136 (297)
T PF13170_consen 59 HRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGF--KRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL 136 (297)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcc--CccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc
Confidence 45566666665554 2222 677888888888 6665555442222222 1 2355677777777542
Q ss_pred --CCcccHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCCcc--cHHHHHHHHhccCC--hHHHHHHHHHHHHhCCC
Q 005512 107 --CDLFLWNVMIRAFVDNRQF----DRSLQLYAQMRELDINPDKF--TFPFVLKACGYLRD--IEFGVKVHKDAVDSGYW 176 (693)
Q Consensus 107 --~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~ 176 (693)
++-.++.+|+.. ...+. +.+...|+.+...|+..+.. ..+.+|..+....+ ...+..+++.+.+.|++
T Consensus 137 Ts~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k 214 (297)
T PF13170_consen 137 TSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK 214 (297)
T ss_pred cCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc
Confidence 234455555543 22322 34555666666666554332 23333333332222 23556666667777766
Q ss_pred CChhhHHH
Q 005512 177 SDVFVGNS 184 (693)
Q Consensus 177 ~~~~~~~~ 184 (693)
.....|..
T Consensus 215 ik~~~yp~ 222 (297)
T PF13170_consen 215 IKYMHYPT 222 (297)
T ss_pred cccccccH
Confidence 55555443
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.40 E-value=9.1 Score=30.22 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCC
Q 005512 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338 (693)
Q Consensus 259 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 338 (693)
++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-++-.. +.|..+++..-+.+|..+|
T Consensus 22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 3444444444433311 233333344567788999999999999999999999888654 6677777777777777766
Q ss_pred cccCcchh
Q 005512 339 VLPDSVTF 346 (693)
Q Consensus 339 ~~p~~~t~ 346 (693)
.|...+|
T Consensus 99 -~p~lq~F 105 (115)
T TIGR02508 99 -DPRLQTF 105 (115)
T ss_pred -CHHHHHH
Confidence 4444444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.30 E-value=6 Score=36.02 Aligned_cols=75 Identities=19% Similarity=0.159 Sum_probs=55.1
Q ss_pred hhcCCHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----CchhHHHHHHHHHhcCChHH
Q 005512 490 GRAGKLNEAREFIERMPIRP--DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE----NPGRYVILSNIYASSGKRIE 563 (693)
Q Consensus 490 ~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 563 (693)
.+.|+ ++|++.|-++.-.| +.......+..|....|.++++.++-+++++.++ |+.++.+|+.+|.+.|++++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 44454 56777777763333 4444555566677788999999999999986532 57889999999999999988
Q ss_pred HH
Q 005512 564 AN 565 (693)
Q Consensus 564 a~ 565 (693)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=84.08 E-value=30 Score=30.74 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=24.7
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhc
Q 005512 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203 (693)
Q Consensus 165 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 203 (693)
+..+.+.+.++.++...+..+++.+.+.|.+..-..++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 344455566777777777777777777776655554443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.59 E-value=2.4 Score=25.69 Aligned_cols=29 Identities=17% Similarity=0.057 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 546 GRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
..+..++..|.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.22 E-value=1.9 Score=24.55 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHH
Q 005512 546 GRYVILSNIYASSGKRIEANRIRA 569 (693)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~a~~~~~ 569 (693)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355678888888888888888765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.19 E-value=2.4 Score=27.11 Aligned_cols=28 Identities=21% Similarity=0.180 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 546 GRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
.+++.|+..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998875
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.07 E-value=17 Score=32.11 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=21.8
Q ss_pred hhcCCHHHHHHHHHhCCC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005512 490 GRAGKLNEAREFIERMPI--RP-DAGVWGSLLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 490 ~~~g~~~~A~~~~~~m~~--~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
...|.+++...-.+.+.. .| ....-.+|.-+-.+.|++..|...|+.+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 344555555444444411 11 122223333344455555555555555543
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.76 E-value=62 Score=33.35 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=41.2
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005512 383 AVVDLYVKCGSLMHARKVFDRMKQK---NVISWSTMISGYGMHGHGREALFLFDQMK 436 (693)
Q Consensus 383 ~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 436 (693)
.|+.-|.-.|++.+|...++++.-| ..+.+.+++.+.-+.|+-...+.+++...
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf 570 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECF 570 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4677788899999999999887755 56778888888888888776665555543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.68 E-value=0.95 Score=39.35 Aligned_cols=86 Identities=14% Similarity=0.128 Sum_probs=63.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchH
Q 005512 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228 (693)
Q Consensus 149 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 228 (693)
.++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.++..++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777788888888888888877667788899999999999888888888874433 333556777777788888
Q ss_pred HHHHHHHHH
Q 005512 229 GLLLFKRMM 237 (693)
Q Consensus 229 A~~~~~~m~ 237 (693)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 877777653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.24 E-value=1.3 Score=38.45 Aligned_cols=114 Identities=11% Similarity=0.273 Sum_probs=57.1
Q ss_pred HHHHHHccCChHHHHHHhcccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC
Q 005512 83 LVSQYASLGSISHAFSLFSSVSD---SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159 (693)
Q Consensus 83 li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 159 (693)
+|+.+.+.+.+....+.++.+.. ..+....|.++..|++.++.++..++++. .+.+-...+++.|.+.+-
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 45555555555555555554421 11455566667777776665666555541 122333445555554444
Q ss_pred hHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC-----------CCcchHHHHHHHHHhcCC
Q 005512 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE-----------RNVVTWSSLTGAYAQNGC 225 (693)
Q Consensus 160 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~ 225 (693)
++++.- .|.+.|+.++|.++...+.. .|...|..++..+...+.
T Consensus 86 ~~~a~~----------------------Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVY----------------------LYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHH----------------------HHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHH----------------------HHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 444433 34444444444443222211 356677777777766554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=81.82 E-value=14 Score=33.41 Aligned_cols=93 Identities=19% Similarity=0.108 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhcCCCC------HhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCChhHHHHHHH
Q 005512 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKN------VISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLS 451 (693)
Q Consensus 379 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~ 451 (693)
..+..+.+.|.+.|+.++|.+.|.++.+.. +..+-.+|......+++..+.....+.... ..+.......-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456678899999999999999999988542 345677888888899999999999988776 3333222221121
Q ss_pred -----HHHhcCCHHHHHHHHHHhHH
Q 005512 452 -----ACSHAGLIDEGWECFNSMLR 471 (693)
Q Consensus 452 -----~~~~~g~~~~a~~~~~~~~~ 471 (693)
++...+++..|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 33456888888888876643
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.70 E-value=48 Score=31.31 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCh------hHHHHHHHH
Q 005512 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDH------ITFVSVLSA 452 (693)
Q Consensus 379 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~------~t~~~ll~~ 452 (693)
..++--..+|..+|.++-|-..+++.-+ ...+-++++|+++|++....+..+. ..+..+-+.
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 3455566788888988877776665431 2235567788888877765422221 223334445
Q ss_pred HHhcCCHHHHHHHHHHhHHh---hCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC---C--CCC-ChhhHHHHHHHHH
Q 005512 453 CSHAGLIDEGWECFNSMLRD---FGVAPR-PEHYACMVDMLGRAGKLNEAREFIERM---P--IRP-DAGVWGSLLGACR 522 (693)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m---~--~~p-~~~~~~~ll~~~~ 522 (693)
+.+...+++|-..+.+-..- ..--++ -..|-..|-.|.-..++..|...++.- | ..| |..+...||.+|-
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 56666666665554432110 011111 123455566667778999999999883 3 122 5677888888875
Q ss_pred hcCCHHHHHHHHH
Q 005512 523 IHSNVELAEMAAK 535 (693)
Q Consensus 523 ~~g~~~~a~~~~~ 535 (693)
.||.++...++.
T Consensus 240 -~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 240 -EGDIEEIKKVLS 251 (308)
T ss_pred -cCCHHHHHHHHc
Confidence 577777766554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=81.28 E-value=58 Score=32.02 Aligned_cols=20 Identities=10% Similarity=-0.198 Sum_probs=14.6
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 005512 519 GACRIHSNVELAEMAAKALF 538 (693)
Q Consensus 519 ~~~~~~g~~~~a~~~~~~~~ 538 (693)
..+.+.++++.|...|+..+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34566788888888888654
|
It is also involved in sporulation []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=80.84 E-value=54 Score=32.53 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhc--cCCChhHHHHHHHHHHhc-CC--HHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 005512 426 REALFLFDQMKAL--IKPDHITFVSVLSACSHA-GL--IDEGWECFNSMLRDFGVAPRPEHYACMV 486 (693)
Q Consensus 426 ~~A~~~~~~m~~~--~~p~~~t~~~ll~~~~~~-g~--~~~a~~~~~~~~~~~~~~~~~~~~~~li 486 (693)
+.+...|+.+... .+-|..-+.+-+-++... .. ..++.++++.+.+. |+++...+|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 4566677777664 344443333333333322 22 34677788888774 8888887776554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.45 E-value=31 Score=36.83 Aligned_cols=150 Identities=19% Similarity=0.071 Sum_probs=99.8
Q ss_pred hhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005512 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469 (693)
Q Consensus 390 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 469 (693)
-.|+++.|..++..++++ .-+.++.-+...|-.++|+++ .+|..-.- ....+.|+++.|.++..+.
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~--------s~D~d~rF---elal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL--------STDPDQRF---ELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc--------CCChhhhh---hhhhhcCcHHHHHHHHHhh
Confidence 357778777777666632 233445555667777777653 33332211 2234678899888876554
Q ss_pred HHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHH
Q 005512 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549 (693)
Q Consensus 470 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 549 (693)
.+..-|..|.++..+.|++..|.+.|.+.. -|.+|+-.+...|+.+.-..+.....+.+..|.
T Consensus 664 -------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~---- 726 (794)
T KOG0276|consen 664 -------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL---- 726 (794)
T ss_pred -------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch----
Confidence 245678999999999999999999998753 356677777777777766666665555555443
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 005512 550 ILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 550 ~l~~~~~~~g~~~~a~~~~~~m 571 (693)
--.+|...|+++++.+++.+-
T Consensus 727 -AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 -AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -HHHHHHHcCCHHHHHHHHHhc
Confidence 224577889999998887654
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.06 E-value=10 Score=38.98 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=42.0
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCCHHHH
Q 005512 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PI-RPDAGVWGSLLGACRIHSNVELA 530 (693)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a 530 (693)
..+.|+++.+.+.+....+ -+.....+..+++....+.|++++|...-+.| +. -.+..+.........+.|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 3455556655555554433 23333444555555555566666665555554 10 01222222222223344555555
Q ss_pred HHHHHHHhhcCCC
Q 005512 531 EMAAKALFDLDAE 543 (693)
Q Consensus 531 ~~~~~~~~~~~p~ 543 (693)
...+++++.++|+
T Consensus 411 ~~~wk~~~~~~~~ 423 (831)
T PRK15180 411 YHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccCCh
Confidence 5555555555543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 1e-10
Identities = 97/673 (14%), Positives = 195/673 (28%), Gaps = 188/673 (27%)
Query: 72 YHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL--FLWNVMIRAFVDN--RQFDR 127
+HHH + T QY +S F D D+ +++ + +D+ D
Sbjct: 2 HHHHHMDFETG-EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 128 SLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY------WSDVFV 181
L ++ FV ++ + Y
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFV-----------------EEVLRINYKFLMSPIKTEQR 103
Query: 182 GNSLIA-MYGKCGRVDVCR--QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
S++ MY + R + Q+F + NV + L ++ +
Sbjct: 104 QPSMMTRMYIEQ-RDRLYNDNQVF---AKYNV--------------SRLQPYLKLRQALL 145
Query: 239 EGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
E +RP + V+++ + K A DVC + + + +
Sbjct: 146 E-LRPAKNVLIDGVLGSGKTWVALDVCL-------SYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 299 FFEGILNKDLV----SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
E +L K L +WTS + + L + +++ LRR+
Sbjct: 198 VLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE----LRRL--------------- 237
Query: 355 SLASFQQARTVHGIIIHCFLGNQLALD----TAVVDLY-VKCGSLMHAR--KVFDRMKQK 407
+ + +++ L + + + C L+ R +V D +
Sbjct: 238 ----LKSKPYENCLLV---------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHA----GLIDEG 462
S + E L +K L +P + + +I E
Sbjct: 285 TTTHISLDHHSMTL--TPDEVKSLL--LKYLDCRPQDLP----REVLTTNPRRLSIIAE- 335
Query: 463 WECFNSMLRDFGVAPRPEHYA-CMVDMLGRAGKL-------NEAREFIERMPIRPD---- 510
+RD +++ D L + E R+ +R+ + P
Sbjct: 336 ------SIRDG--LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 511 -AGV----WGSLLGACRIHSNVE--LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
+ W + I S+V + ++ +L + I S IY +++
Sbjct: 388 PTILLSLIWFDV-----IKSDVMVVVNKLHKYSLVEKQP-KESTISIPS-IYLEL--KVK 438
Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE----------LTYSELAK 613
AL + +++ N TF + D P + L E +
Sbjct: 439 LENEYALHRS----------IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 614 LMDRIRREGYTPDLNFPFV------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVT 667
M R + L+F F+ + GS + + L+ +I
Sbjct: 489 RMTLFRMV-F---LDFRFLEQKIRHDSTAWNASGSILNTLQQLK------FYKPYICDND 538
Query: 668 GR-EIIVRDAHRF 679
+ E +V F
Sbjct: 539 PKYERLVNAILDF 551
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.8 bits (117), Expect = 3e-06
Identities = 11/143 (7%), Positives = 46/143 (32%), Gaps = 8/143 (5%)
Query: 133 AQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV---HKDAVDSGYWSDVFVGNSLIAMY 189
Q + ++ + K C + + H + + N+++ +
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 190 GKCGRVDVCRQLFDEMPER----NVVTWSSLTGAYAQNGCYEEGLL-LFKRMMDEGIRPN 244
+ G + + + +++++++ + + ++M EG++
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
Query: 245 RVVILNAMACVRKVSEADDVCRV 267
+ ++ + + V +V
Sbjct: 236 ALFTAVLLSEEDRATVLKAVHKV 258
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.3 bits (113), Expect = 8e-06
Identities = 16/134 (11%), Positives = 34/134 (25%), Gaps = 10/134 (7%)
Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNV----ISWSTMISGYGMHGHGREALFLFDQMKA 437
++ SL + + Q + + A L
Sbjct: 96 ARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG 155
Query: 438 LIK----PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
+ + +V+ + G E + G+ P YA + +GR
Sbjct: 156 QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAAALQCMGRQD 214
Query: 494 KLNEA-REFIERMP 506
+ +E+M
Sbjct: 215 QDAGTIERCLEQMS 228
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.3 bits (108), Expect = 4e-05
Identities = 13/152 (8%), Positives = 40/152 (26%), Gaps = 7/152 (4%)
Query: 67 LRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF------SSVSDSCDLFLWNVMIRAFV 120
S+ + + A L L ++N ++ +
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL-RDIEFGVKVHKDAVDSGYWSDV 179
F + + +++ + PD ++ L+ G +D + + G
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVV 211
L++ + + ++ +
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.4 bits (103), Expect = 1e-04
Identities = 10/90 (11%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 271 NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK-------DLVSWTSMIEAYAQADL 323
L Q A ++ +A + L + +++ +A+
Sbjct: 121 AQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA 180
Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
E + V + + PD +++ ++
Sbjct: 181 FKELVYVLFMVKDAGLTPDLLSYAAALQCM 210
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.5 bits (98), Expect = 5e-04
Identities = 18/143 (12%), Positives = 43/143 (30%), Gaps = 11/143 (7%)
Query: 235 RMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVV------DNGLDLDQSLQNAAMVMYA 288
+ + + +L C + ++V L + NA M+ +A
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 289 RCGRMDMARRFFEGILNK----DLVSWTSMIEAYAQADLPLEALEVY-RQMILRRVLPDS 343
R G + + DL+S+ + ++ + D +E QM + +
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 344 VTFLGVIRACSSLASFQQARTVH 366
+ ++ + V
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVK 259
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 42/321 (13%), Positives = 92/321 (28%), Gaps = 57/321 (17%)
Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKD---LVSWTSMIEAYAQADLPLEALEVYRQMI 335
+ + A Y M + ++ KD I + + E + +++
Sbjct: 25 VVSLAERHYYN-CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83
Query: 336 -LRRVLPDSVTFLGVIRAC------SSLASFQQARTVHGIII-------HCFLGNQLALD 381
L P S +G + +A + G+
Sbjct: 84 DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA-----TTLEKTYGPAWIAYGH----- 133
Query: 382 TAVVDLYVKCGSLMHARKVFD---RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL 438
+ A + ++ + + + YG+ + + A F +AL
Sbjct: 134 -----SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS--QAL 186
Query: 439 -IKPDHITFVSVLS----ACSHAGLIDEGWECFN---SMLRDFGVAPRPEHYACMVDMLG 490
I P+ V+ G + F ++ G + + +++ LG
Sbjct: 187 SIAPE---DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243
Query: 491 RA----GKLNEAREFIER-MPIRPD-AGVWGSLLGACRIHSNVELAEMA-AKALFDLDAE 543
K EA ++ + + + P A + ++ + N E A AL L +
Sbjct: 244 HVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL-GLRRD 302
Query: 544 NPGRYVILSNIYASSGKRIEA 564
+ +L + EA
Sbjct: 303 DTFSVTMLGHCIEMYIGDSEA 323
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 50/384 (13%), Positives = 97/384 (25%), Gaps = 52/384 (13%)
Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK----VSEADDV 264
VV +S G + L + + G+ P++VV + + ++ V V
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQ--AHGLPPDQVVAIASNIGGKQALETVQRLLPV 282
Query: 265 CRVVVDNGLDLDQ--SLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAYA 319
GL DQ ++ + A + +V+ S
Sbjct: 283 LCQAH--GLTPDQVVAIASHGGGKQAL-ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQ 339
Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ-L 378
+ L V Q + PD V A +S +QA ++ Q
Sbjct: 340 ALETVQRLLPVLCQAH--GLTPDQVV------AIASNGGGKQALETVQRLLPVL--CQAH 389
Query: 379 ALDTAVVDLYVKCGSLMH------ARKVFDR---MKQKNVISWSTMISGYGMHGHGREAL 429
L V G V + + V++ ++ G + L
Sbjct: 390 GLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLL 449
Query: 430 FLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA-----PRPEHYA 483
+ Q + P + A + + E +L A + A
Sbjct: 450 PVLCQ--THGLTPAQVV------AIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIA 501
Query: 484 CMVDMLGRAGKLNEAREFIER-MPIRPD-AGVWGSLLGACRIHSNVELAEMA-AKALFDL 540
+ + + + + PD S G + V+ +A L
Sbjct: 502 SNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH-GL 560
Query: 541 DAENPGRYVILSNIYASSGKRIEA 564
+ +
Sbjct: 561 TPDQVVAIASNGGGKQALETVQRL 584
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 7e-04
Identities = 47/395 (11%), Positives = 89/395 (22%), Gaps = 73/395 (18%)
Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR----KVSEA-DD 263
VV +S G + L + + G+ P +VV + + + V
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASHDGGKQALETVQRLLPV 128
Query: 264 VCRVVVDNGLDLDQS--LQNAAMVMYARCGRMDMARRFFE---GILNKDLVSWTSMIEAY 318
+C+ GL +Q + + + G+ + +V+ S
Sbjct: 129 LCQAH---GLTPEQVVAIASHDGG-KQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184
Query: 319 AQADLPLEALEVYRQMILRRVLPDSV---TFLGVI-----RACSSLASFQQARTVHGIII 370
+ L V Q + P V G L QA
Sbjct: 185 QALETVQRLLPVLCQAH--GLTPQQVVAIASNGGGKQALETVQRLLPVLCQA-------- 234
Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMH-------ARKVFDR---MKQKNVISWSTMISGYG 420
L V G V + + + V++ ++ G
Sbjct: 235 -------HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQ 287
Query: 421 MHGHGREALFLFDQMKAL-IKPDHI-TFVSVLSACSHAGLIDEGWECFNSMLR---DFGV 475
+ L + Q A + P + S + V
Sbjct: 288 ALETVQRLLPVLCQ--AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 345
Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIER-MPIRPD-AGVWGSLLGACRIHSNVELAEMA 533
A A + + + + P+ S G +E +
Sbjct: 346 A-----IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGG---KQALETVQRL 397
Query: 534 ----AKALFDLDAENPGRYVILSNIYASSGKRIEA 564
+A L E +
Sbjct: 398 LPVLCQAH-GLTPEQVVAIASHDGGKQALETVQRL 431
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 693 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.73 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.72 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.44 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.36 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.35 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.34 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.32 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.31 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.3 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.24 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.14 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.88 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.86 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.75 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.68 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.68 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.62 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.57 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.45 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.44 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.41 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.41 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.32 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.32 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.26 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.26 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.22 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.19 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.06 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.05 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.99 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.98 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.94 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.91 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.84 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.84 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.82 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.73 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.73 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.57 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.56 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.5 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.46 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.37 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.31 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.21 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.13 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.96 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.8 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.5 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 86.72 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.5e-24 Score=159.98 Aligned_cols=208 Identities=13% Similarity=0.117 Sum_probs=150.8
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99950203279899999999992689825699999999896099999999997517---899769999999999559948
Q 005512 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGR 426 (693)
Q Consensus 350 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 426 (693)
...+...+..+.|...+..+.+.. +.+...+..+...|...|++++|...++... ..+...+..+...+...|+++
T Consensus 176 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 254 (388)
T d1w3ba_ 176 GCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 630102471999999999999849-4649999997155220052999999999857775547999999999999878999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-
Q ss_conf 9999999978515998459999999998118999999999996883099987568999999976249989999999849-
Q 005512 427 EALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM- 505 (693)
Q Consensus 427 ~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 505 (693)
+|+..|++..+..+.+..++..+...+...|++++|...++.... ..+.+...+..+...+...|++++|.+.+++.
T Consensus 255 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 332 (388)
T d1w3ba_ 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999984999899999999999974879999999986540--487300101579999998789999999999999
Q ss_pred CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9999-962699999999715988999999999851499993249999999996599
Q 005512 506 PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560 (693)
Q Consensus 506 ~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 560 (693)
...| +..+|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|+
T Consensus 333 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 86889899999999999985999999999999997099989999999999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.8e-22 Score=149.60 Aligned_cols=219 Identities=15% Similarity=0.097 Sum_probs=178.2
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 50203279899999999992689825699999999896099999999997517---899769999999999559948999
Q 005512 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREAL 429 (693)
Q Consensus 353 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 429 (693)
....+....+........... +.....+..+...+...|+.+.|...+++.. ..+...|..+...+...|++++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 223 (388)
T d1w3ba_ 145 LKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf 211000135678888740258-6106899863630102471999999999999849464999999715522005299999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC--CC
Q ss_conf 9999978515998459999999998118999999999996883099987568999999976249989999999849--99
Q 005512 430 FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM--PI 507 (693)
Q Consensus 430 ~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~ 507 (693)
..+++.....+.+...+..+...+...|++++|...++++.+ -.+.+...+..+...+...|++++|.+.++.. ..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 301 (388)
T d1w3ba_ 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 999985777554799999999999987899999999999998--499989999999999997487999999998654048
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9996269999999971598899999999985149999324999999999659948999999999848
Q 005512 508 RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 508 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 574 (693)
..+...+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|...+++..+.
T Consensus 302 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 7300101579999998789999999999999868898999999999999859999999999999970
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1e-14 Score=102.65 Aligned_cols=117 Identities=18% Similarity=0.109 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 8999999999996883099987568999999976249989999999849-9999-9626999999997159889999999
Q 005512 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAA 534 (693)
Q Consensus 457 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~ 534 (693)
+...++...+..+.+......+...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|+..+
T Consensus 150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 229 (323)
T d1fcha_ 150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 229 (323)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHH
T ss_conf 57999999999999971301222111036888888887755002111222222222111013330122111101378887
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 998514999932499999999965994899999999984
Q 005512 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 535 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 573 (693)
+++++++|+++.++..++.+|...|++++|...+++..+
T Consensus 230 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 230 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 789988432499999999999987899999999999997
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=5.2e-15 Score=104.41 Aligned_cols=138 Identities=15% Similarity=0.057 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 48999999997851--5998459999999998118999999999996883099987568999999976249989999999
Q 005512 425 GREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502 (693)
Q Consensus 425 ~~~A~~~~~~m~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 502 (693)
..++...+.+.... ...+...+..+...+...|++++|...++.... ..+.+...+..+...|.+.|++++|.+.+
T Consensus 152 ~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 229 (323)
T d1fcha_ 152 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAY 229 (323)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCHHHHHHCCCCCCCCHHHHHHH
T ss_conf 9999999999999713012221110368888888877550021112222--22222111013330122111101378887
Q ss_pred HHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHCCCHHHH
Q ss_conf 849-9999-96269999999971598899999999985149999324-----------99999999965994899
Q 005512 503 ERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR-----------YVILSNIYASSGKRIEA 564 (693)
Q Consensus 503 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A 564 (693)
++. ...| +..+|..+..++...|++++|+..+++++++.|++... +..+..++...|+.+.+
T Consensus 230 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 230 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 789988432499999999999987899999999999997097570011245999999999999999982988999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=7.3e-10 Score=73.25 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=33.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHC-CCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC------CCCCCHHHHHHH
Q ss_conf 999976249989999999849-9999-----9626999999997159889999999998514------999932499999
Q 005512 485 MVDMLGRAGKLNEAREFIERM-PIRP-----DAGVWGSLLGACRIHSNVELAEMAAKALFDL------DAENPGRYVILS 552 (693)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~ 552 (693)
+...+...|++++|...+++. ...+ ....+..+...+...|++++|...+++++.. .|.....+..++
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 298 (366)
T d1hz4a_ 219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 298 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999860448989999999997622466677788999999998758799999999999988764266747999999999
Q ss_pred HHHHHCCCHHHHHHHHHHH
Q ss_conf 9999659948999999999
Q 005512 553 NIYASSGKRIEANRIRALM 571 (693)
Q Consensus 553 ~~~~~~g~~~~A~~~~~~m 571 (693)
.+|...|++++|.+.+++.
T Consensus 299 ~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 299 QLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
T ss_conf 9999878999999999999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.36 E-value=6.9e-10 Score=73.40 Aligned_cols=186 Identities=14% Similarity=0.169 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCC--C-C-HHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 2798999999999926898256999999998960999999999975178--9-9-7699999999995599489999999
Q 005512 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--K-N-VISWSTMISGYGMHGHGREALFLFD 433 (693)
Q Consensus 358 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 433 (693)
..+.+..+++..++...+.+..++...+..+.+.|+.+.|..+|+.+.+ | + ...|...+....+.|+.+.|..+|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 45999999999998749987999999999998613389999999999987157869999999999998278688999999
Q ss_pred HHHHCCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC----CCC
Q ss_conf 9785159984599999999-98118999999999996883099987568999999976249989999999849----999
Q 005512 434 QMKALIKPDHITFVSVLSA-CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM----PIR 508 (693)
Q Consensus 434 ~m~~~~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~ 508 (693)
++....+.+...+...... +...|+.+.|..+|+.+.+ ..+.+...+...++.+.+.|+.+.|..+|++. +..
T Consensus 159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~--~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 999808886799999999998765577899999999998--610038899999999998698689999999999827898
Q ss_pred CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99--62699999999715988999999999851499993
Q 005512 509 PD--AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 509 p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 545 (693)
|+ ...|...+..-..+|+.+.+..+.+++.+..|...
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 689999999999999984999999999999998771102
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=8.3e-11 Score=78.98 Aligned_cols=161 Identities=13% Similarity=0.145 Sum_probs=71.3
Q ss_pred HHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999999997517---89976999999999955994899999999785159984599999999981189999999999968
Q 005512 394 LMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470 (693)
Q Consensus 394 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 470 (693)
+++|...++... ..+..+|+.+...+...|++++|+..++++.+.-+.+...+..+...+...|++++|...++.++
T Consensus 94 ~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al 173 (315)
T d2h6fa1 94 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL 173 (315)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999988774226898875888850537889988755543210046889988778888886678999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 830999875689999999762499------89999999849-9999-962699999999715988999999999851499
Q 005512 471 RDFGVAPRPEHYACMVDMLGRAGK------LNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542 (693)
Q Consensus 471 ~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 542 (693)
+ -.+.+...|..+...+.+.+. +++|.+.+.+. ...| +...|..+...+.. ...+++...++.+.++.|
T Consensus 174 ~--~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~ 250 (315)
T d2h6fa1 174 K--EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQP 250 (315)
T ss_dssp H--HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTT
T ss_pred H--HCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHCC
T ss_conf 8--7974499998899999874563102354776799999998498856999998779886-271889999999997287
Q ss_pred CC--CHHHHHHHHHHHH
Q ss_conf 99--3249999999996
Q 005512 543 EN--PGRYVILSNIYAS 557 (693)
Q Consensus 543 ~~--~~~~~~l~~~~~~ 557 (693)
.. +..+..++..|..
T Consensus 251 ~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 251 SHSSPYLIAFLVDIYED 267 (315)
T ss_dssp TCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 75789999999999999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=7e-09 Score=67.29 Aligned_cols=27 Identities=11% Similarity=-0.167 Sum_probs=11.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 999999997159889999999998514
Q 005512 514 WGSLLGACRIHSNVELAEMAAKALFDL 540 (693)
Q Consensus 514 ~~~ll~~~~~~g~~~~A~~~~~~~~~~ 540 (693)
+..+...+...|+.++|...+++++++
T Consensus 294 ~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 294 LLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999999878999999999999997
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=4.1e-09 Score=68.69 Aligned_cols=182 Identities=9% Similarity=0.019 Sum_probs=126.4
Q ss_pred HCCHHHHHHHHHHCC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 099999999997517----8997699999999995599489999999978515998-45999999999811899999999
Q 005512 391 CGSLMHARKVFDRMK----QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPD-HITFVSVLSACSHAGLIDEGWEC 465 (693)
Q Consensus 391 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~ 465 (693)
.+..++|..+|++.. ..+...|...+..+...|+.+.|..+|+++....+.+ ...+...+..+.+.|..+.|+.+
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 02459999999999987499879999999999986133899999999999871578699999999999982786889999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 999688309998756899999997-6249989999999849--9999962699999999715988999999999851499
Q 005512 466 FNSMLRDFGVAPRPEHYACMVDML-GRAGKLNEAREFIERM--PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542 (693)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 542 (693)
|+.+.+ ..+.+...|...+... ...|+.+.|..+|+.+ ....+...|...+......|+.+.|..+|++++...|
T Consensus 157 ~~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 157 FKKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHH--HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 999998--088867999999999987655778999999999986100388999999999986986899999999998278
Q ss_pred CCC----HHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 993----24999999999659948999999999848
Q 005512 543 ENP----GRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 543 ~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 574 (693)
.++ ..|...+..-...|+.+.+..+.+++.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 986899999999999999849999999999999987
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=2.1e-11 Score=82.61 Aligned_cols=193 Identities=9% Similarity=-0.088 Sum_probs=114.1
Q ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 2798999999999926898256999999998960999999999975178---9976999999999955994899999999
Q 005512 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQ 434 (693)
Q Consensus 358 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 434 (693)
+.+.+...+..+..................+...+..+.|...++.+.. .+...|+.+...+...|++++|...+++
T Consensus 124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~ 203 (334)
T d1dcea1 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (334)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 28999999999985592121111057899987445528999999998871898799999999999982688989998877
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHH
Q ss_conf 78515998459999999998118999999999996883099987568999999976249989999999849-9999-962
Q 005512 435 MKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAG 512 (693)
Q Consensus 435 m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 512 (693)
.... .|+. ......+...+..+++...+..... ..+++...+..++..+...|+..+|...+.+. +..| +..
T Consensus 204 ~~~~-~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 277 (334)
T d1dcea1 204 PENV-LLKE---LELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL 277 (334)
T ss_dssp CHHH-HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHH-HHHH---HHHHHHHHHHCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 6776-8999---9999999882441488999998877--18660567887999999986699999999988762913799
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 69999999971598899999999985149999324999999999
Q 005512 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 513 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
.|..+...+...|+.++|...++++++++|.+...|..|...+.
T Consensus 278 ~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 278 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999987899999999999999879663999999999986
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=1.5e-10 Score=77.40 Aligned_cols=90 Identities=14% Similarity=-0.025 Sum_probs=42.2
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 999999896099999999997517---89976999999999955994899999999785159984599999999981189
Q 005512 382 TAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGL 458 (693)
Q Consensus 382 ~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~ 458 (693)
..+..+|.+.|++++|...|++.. ..++.+|+.+..++...|++++|+..|++.....+.+..++..+..++...|+
T Consensus 41 ~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 120 (259)
T d1xnfa_ 41 YERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 120 (259)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999879999999999985434999889996004278887778875234468999876111158889999998766
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999688
Q 005512 459 IDEGWECFNSMLR 471 (693)
Q Consensus 459 ~~~a~~~~~~~~~ 471 (693)
+++|...++..++
T Consensus 121 ~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 121 DKLAQDDLLAFYQ 133 (259)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 7999999999986
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=5.5e-10 Score=74.01 Aligned_cols=169 Identities=8% Similarity=-0.135 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 256999999998960999999999975178---99769999999999559948999999997851599845999999999
Q 005512 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSAC 453 (693)
Q Consensus 377 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~ 453 (693)
+..++..+..+|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+..+.+......+..+.
T Consensus 70 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 149 (259)
T d1xnfa_ 70 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE 149 (259)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 88999600427888777887523446899987611115888999999876679999999999865300078889999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH-HHCC----CCC-CHHHHHHHHHHHHHCCCH
Q ss_conf 8118999999999996883099987568999999976249989999999-8499----999-962699999999715988
Q 005512 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI-ERMP----IRP-DAGVWGSLLGACRIHSNV 527 (693)
Q Consensus 454 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~----~~p-~~~~~~~ll~~~~~~g~~ 527 (693)
...+..+....+...... ..+....+. ++..+............. .... ..| ...+|..+...+...|+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 225 (259)
T d1xnfa_ 150 QKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 225 (259)
T ss_dssp HHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHC---CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
T ss_conf 885358789999987640---314443455-7788888877777899999999986640845099999999999987899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 9999999998514999932499
Q 005512 528 ELAEMAAKALFDLDAENPGRYV 549 (693)
Q Consensus 528 ~~A~~~~~~~~~~~p~~~~~~~ 549 (693)
++|...+++++..+|++...|.
T Consensus 226 ~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 226 DSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHH
T ss_conf 9999999999983997799999
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=1.4e-10 Score=77.64 Aligned_cols=174 Identities=7% Similarity=-0.124 Sum_probs=65.2
Q ss_pred HHHHHHHHHHCC---CCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999999997517---899769999-9999995599489999999978515998459999999998118999999999996
Q 005512 394 LMHARKVFDRMK---QKNVISWST-MISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469 (693)
Q Consensus 394 ~~~A~~~~~~~~---~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 469 (693)
.++|...++++. .++...|.. ....+...+..++|+..+++.....+-+...+..+..++...|++++|...+...
T Consensus 125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~ 204 (334)
T d1dcea1 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 89999999999855921211110578999874455289999999988718987999999999999826889899988776
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 883099987568999999976249989999999849--999996269999999971598899999999985149999324
Q 005512 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM--PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547 (693)
Q Consensus 470 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 547 (693)
.+. .| . .......+...+..+++...+... ...++...+..+...+...++.++|...+.+..+.+|.+..+
T Consensus 205 ~~~---~~--~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 278 (334)
T d1dcea1 205 ENV---LL--K-ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLT 278 (334)
T ss_dssp HHH---HH--H-HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHH---HH--H-HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 776---89--9-99999999882441488999998877186605678879999999866999999999887629137999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999965994899999999984
Q 005512 548 YVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 548 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 573 (693)
+..++.+|...|++++|.+.+++..+
T Consensus 279 ~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 279 IILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999878999999999999998
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=4.1e-07 Score=56.60 Aligned_cols=141 Identities=11% Similarity=-0.075 Sum_probs=93.5
Q ss_pred HHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99989609999999999751789976999999999955994899999999785159984599999999981189999999
Q 005512 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464 (693)
Q Consensus 385 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 464 (693)
...+...|+++.|.+.|.++..++...|..+...|...|++++|+..|++..+.-+.+...|..+..++.+.|++++|..
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999877999999999864898899999999999985891467878999999855234667889999985424999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9999688309998756899999997624998999999984999999-626999999997159889999999998514999
Q 005512 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAE 543 (693)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 543 (693)
.|++.+. ..+.+... .+...|. ....+ ..++..+..++...|++++|.+.++.++++.|.
T Consensus 92 ~~~kAl~--~~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 92 DLKEALI--QLRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHH--TTTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHH--HCCCCCHH------HHHHHHH-----------HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 9999998--67267367------8998665-----------436305889999999999978999999999999836998
Q ss_pred C
Q ss_conf 9
Q 005512 544 N 544 (693)
Q Consensus 544 ~ 544 (693)
.
T Consensus 153 ~ 153 (192)
T d1hh8a_ 153 P 153 (192)
T ss_dssp G
T ss_pred C
T ss_conf 0
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.86 E-value=4.7e-07 Score=56.26 Aligned_cols=22 Identities=9% Similarity=-0.121 Sum_probs=9.7
Q ss_pred HHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 9715988999999999851499
Q 005512 521 CRIHSNVELAEMAAKALFDLDA 542 (693)
Q Consensus 521 ~~~~g~~~~A~~~~~~~~~~~p 542 (693)
+...++.+.|...+++..+.+|
T Consensus 209 ~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 209 QLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHCCHHHHHHHHHHHHHHCC
T ss_conf 9984659999999999997597
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.75 E-value=8.2e-08 Score=60.82 Aligned_cols=84 Identities=10% Similarity=-0.048 Sum_probs=28.8
Q ss_pred HHHHHHCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99896099999999997517---899769999999999559948999999997851599845999999999811899999
Q 005512 386 DLYVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEG 462 (693)
Q Consensus 386 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a 462 (693)
..|.+.|++++|...|++.. ..+...|+.+..+|.+.|++++|+..|++.....+-+..+|..+..++...|++++|
T Consensus 12 n~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A 91 (201)
T d2c2la1 12 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEA 91 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 99998699999999999999859998999981789874100000124788888871887389999999999987999999
Q ss_pred HHHHHHH
Q ss_conf 9999996
Q 005512 463 WECFNSM 469 (693)
Q Consensus 463 ~~~~~~~ 469 (693)
...|+.+
T Consensus 92 ~~~~~~a 98 (201)
T d2c2la1 92 IANLQRA 98 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=2.1e-06 Score=52.31 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=11.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999811899999999999688
Q 005512 446 FVSVLSACSHAGLIDEGWECFNSMLR 471 (693)
Q Consensus 446 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 471 (693)
+..+...+...|++++|...++.+..
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 89999999981739999999999998
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.68 E-value=1.1e-07 Score=60.09 Aligned_cols=88 Identities=7% Similarity=-0.122 Sum_probs=31.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999955994899999999785159984599999999981189999999999968830999875689999999762499
Q 005512 415 MISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494 (693)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 494 (693)
....+.+.|++++|+..|++.....+.+...|..+..++...|++++|...++.+++ -.+-+...|..++.+|.+.|+
T Consensus 10 ~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~~~~l~~ 87 (201)
T d2c2la1 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMES 87 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
T ss_conf 999999869999999999999985999899998178987410000012478888887--188738999999999998799
Q ss_pred HHHHHHHHHH
Q ss_conf 8999999984
Q 005512 495 LNEAREFIER 504 (693)
Q Consensus 495 ~~~A~~~~~~ 504 (693)
+++|...|++
T Consensus 88 ~~~A~~~~~~ 97 (201)
T d2c2la1 88 YDEAIANLQR 97 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=7.3e-06 Score=49.04 Aligned_cols=122 Identities=13% Similarity=-0.038 Sum_probs=61.6
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99995599489999999978515998459999999998118999999999996883099987568999999976249989
Q 005512 417 SGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496 (693)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 496 (693)
..+...|+++.|++.|.++ .+|+..++..+..++...|++++|...|++.++ -.+..
T Consensus 13 ~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~------------------ 69 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHL------------------ 69 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC------------------
T ss_pred HHHHHCCCHHHHHHHHHHC---CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHHHH------------------
T ss_conf 9999877999999999864---898899999999999985891467878999999--85523------------------
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC----------------CHHHHHHHHHHHHCCC
Q ss_conf 999999849999996269999999971598899999999985149999----------------3249999999996599
Q 005512 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN----------------PGRYVILSNIYASSGK 560 (693)
Q Consensus 497 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~----------------~~~~~~l~~~~~~~g~ 560 (693)
...|..+..++...|++++|+..+++++...+.+ ..++..++.+|...|+
T Consensus 70 --------------~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~ 135 (192)
T d1hh8a_ 70 --------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 135 (192)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred --------------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf --------------466788999998542499999999999986726736789986654363058899999999999789
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 489999999998489
Q 005512 561 RIEANRIRALMKRRG 575 (693)
Q Consensus 561 ~~~A~~~~~~m~~~~ 575 (693)
+++|.+.++......
T Consensus 136 ~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 136 WKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998369
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.2e-06 Score=53.73 Aligned_cols=104 Identities=6% Similarity=-0.087 Sum_probs=57.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCH
Q ss_conf 99998118999999999996883099987568999999976249989999999849-9999-962699999999715988
Q 005512 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNV 527 (693)
Q Consensus 450 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 527 (693)
...+.+.|++++|...|+++++ -.+.+...|..+...|...|++++|.+.|++. ...| +..+|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf 9999995899999998660211--00011333245678887405421288889999987544668779999999994999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9999999998514999932499999999
Q 005512 528 ELAEMAAKALFDLDAENPGRYVILSNIY 555 (693)
Q Consensus 528 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 555 (693)
++|...+++++.+.|.++..+..+..+.
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9999989999872999799999999999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=1.2e-06 Score=53.87 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=46.9
Q ss_pred HHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHH
Q ss_conf 99976249989999999849-9999-962699999999715988999999999851499993249999999996599489
Q 005512 486 VDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563 (693)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 563 (693)
...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.++...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999969999999999998861996013430001101100001121001346777402202677889999998127999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999848
Q 005512 564 ANRIRALMKRR 574 (693)
Q Consensus 564 A~~~~~~m~~~ 574 (693)
|...+++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
T ss_conf 99999999984
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.6e-06 Score=53.03 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=70.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCC
Q ss_conf 999998118999999999996883099987568999999976249989999999849-9999-96269999999971598
Q 005512 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSN 526 (693)
Q Consensus 449 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 526 (693)
-...+...|++++|...|..+++ -.+.+...|..+..+|...|++++|+..+++. ...| +...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--CCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999996999999999999886--1996013430001101100001121001346777402202677889999998127
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 89999999998514999932499999999
Q 005512 527 VELAEMAAKALFDLDAENPGRYVILSNIY 555 (693)
Q Consensus 527 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 555 (693)
+++|+..++++++.+|+++..+..+..+-
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999999984989899999999783
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.6e-06 Score=52.97 Aligned_cols=56 Identities=18% Similarity=-0.055 Sum_probs=18.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999971598899999999985149999324999999999659948999999999
Q 005512 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 516 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 571 (693)
.+...+...|++++|...++++++++|.+..++..++.+|...|++++|...+++.
T Consensus 49 ~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a 104 (159)
T d1a17a_ 49 NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETV 104 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 56788874054212888899999875446687799999999949999999989999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=9.2e-06 Score=48.42 Aligned_cols=83 Identities=11% Similarity=0.014 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 8999999976249989999999849-9999-9626999999997159889999999998514999932499999999965
Q 005512 481 HYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558 (693)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 558 (693)
.|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++.+...+..+....
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999886421101100000001002231034677799998722299999999999972989899999999999999
Q ss_pred CCHHH
Q ss_conf 99489
Q 005512 559 GKRIE 563 (693)
Q Consensus 559 g~~~~ 563 (693)
+...+
T Consensus 144 ~~~~~ 148 (170)
T d1p5qa1 144 RRQLA 148 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=1e-07 Score=60.30 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=7.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9999999998399015999986
Q 005512 280 QNAAMVMYARCGRMDMARRFFE 301 (693)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~ 301 (693)
++.|...|...|+..+|...|.
T Consensus 189 ~~~Lg~~~~~~~~~~~A~~~y~ 210 (497)
T d1ya0a1 189 YNQLAILASSKGDHLTTIFYYC 210 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999998699999999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.32 E-value=1.7e-06 Score=52.83 Aligned_cols=90 Identities=17% Similarity=-0.009 Sum_probs=76.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99999976249989999999849-9999-962699999999715988999999999851499993249999999996599
Q 005512 483 ACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560 (693)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 560 (693)
-.+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++..|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999999876058999988610112111100123354564101258774100000111111000003789999999789
Q ss_pred HHHHHHHHHHHH
Q ss_conf 489999999998
Q 005512 561 RIEANRIRALMK 572 (693)
Q Consensus 561 ~~~A~~~~~~m~ 572 (693)
+++|.+.+++..
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999981
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=2.7e-05 Score=45.62 Aligned_cols=61 Identities=10% Similarity=-0.120 Sum_probs=31.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9999999971598899999999985149999324999999999659948999999999848
Q 005512 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 514 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 574 (693)
|..+..+|.+.|++++|+..++++++++|.++.++..++.+|...|++++|...+++..+.
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999886421101100000001002231034677799998722299999999999972
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.26 E-value=3.4e-05 Score=45.00 Aligned_cols=91 Identities=11% Similarity=0.042 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 8999999976249989999999849-9999-9626999999997159889999999998514999932499999999965
Q 005512 481 HYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558 (693)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 558 (693)
.|..+..+|.+.|++++|+..+++. ...| +...|.....++...|++++|+..++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99849999877622011000223222013104889998899998827899999999999985989899999999999999
Q ss_pred CCHHH-HHHHHHHH
Q ss_conf 99489-99999999
Q 005512 559 GKRIE-ANRIRALM 571 (693)
Q Consensus 559 g~~~~-A~~~~~~m 571 (693)
+...+ ..+++..|
T Consensus 146 ~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 146 KEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 86999999999999
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=1.2e-06 Score=53.67 Aligned_cols=26 Identities=12% Similarity=0.117 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 49999999999299018999999967
Q 005512 310 SWTSMIEAYAQADLPLEALEVYRQMI 335 (693)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~ 335 (693)
+|+.+...+...|+..+|+..|.+..
T Consensus 188 ~~~~Lg~~~~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 188 PYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999998699999999999998
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=7.5e-06 Score=48.94 Aligned_cols=106 Identities=13% Similarity=-0.055 Sum_probs=69.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHC-CCCCCH---HHHHHHHH
Q ss_conf 9999999811899999999999688309998756899999997624998---9999999849-999996---26999999
Q 005512 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL---NEAREFIERM-PIRPDA---GVWGSLLG 519 (693)
Q Consensus 447 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~ll~ 519 (693)
..+++.+...+++++|.+.|+..+. --+.++.++..+..++.+.++. ++|..+++++ ...|+. .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 7798873699999999999999883--29998999999999999851267899999999999860699319999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99715988999999999851499993249999999
Q 005512 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554 (693)
Q Consensus 520 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 554 (693)
+|...|++++|+..++++++++|++.........+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99997316999999999997690989999999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.19 E-value=2.1e-05 Score=46.30 Aligned_cols=83 Identities=8% Similarity=-0.062 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 568999999976249989999999849-9999-96269999999971598899999999985149999324999999999
Q 005512 479 PEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
...+..+..++.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++..+...+..+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999899999864021013666554431000223677769999998047999999999999859899999999999999
Q ss_pred HCCCH
Q ss_conf 65994
Q 005512 557 SSGKR 561 (693)
Q Consensus 557 ~~g~~ 561 (693)
.....
T Consensus 157 ~l~~~ 161 (169)
T d1ihga1 157 KIKAQ 161 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99989
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.13 E-value=0.00011 Score=41.96 Aligned_cols=59 Identities=15% Similarity=-0.036 Sum_probs=27.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999997159889999999998514999932499999999965994899999999984
Q 005512 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 515 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 573 (693)
..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...+++..+
T Consensus 71 ~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 71 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 61999999846530111010001000000012467768999996899999999999998
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.06 E-value=7.4e-05 Score=42.94 Aligned_cols=65 Identities=8% Similarity=-0.137 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 96269999999971598899999999985149999324999999999659948999999999848
Q 005512 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 510 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 574 (693)
....|..+..++.+.|++++|+..+.++++++|.++..|..++.+|...|++++|...+++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 39999989999986402101366655443100022367776999999804799999999999985
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.05 E-value=4.6e-05 Score=44.17 Aligned_cols=77 Identities=10% Similarity=-0.045 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 68999999976249989999999849-9999-96269999999971598899999999985149999324999999999
Q 005512 480 EHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
.++..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|++++|+..++++++++|++..+...+..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9996199999984653011101000100000001246776899999689999999999999829898999999999999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.99 E-value=0.00029 Score=39.34 Aligned_cols=59 Identities=10% Similarity=-0.134 Sum_probs=30.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999997159889999999998514999932499999999965994899999999984
Q 005512 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 515 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 573 (693)
..+..++...|++++|+..++++++++|.+...+..++.+|...|++++|...++++..
T Consensus 68 ~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 68 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 84999987762201100022322201310488999889999882789999999999998
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=0.0003 Score=39.26 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6899999997624998999999984
Q 005512 480 EHYACMVDMLGRAGKLNEAREFIER 504 (693)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~ 504 (693)
.+.+++.+.|...++++.-.+.+++
T Consensus 281 ~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 281 SVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999998671246789999987
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=2.6e-05 Score=45.70 Aligned_cols=88 Identities=10% Similarity=0.089 Sum_probs=38.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHH
Q ss_conf 999976249989999999849-9999-9626999999997159889999999998514999932-------499999999
Q 005512 485 MVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG-------RYVILSNIY 555 (693)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~~ 555 (693)
+...+.+.|++++|++.|++. ...| +..+|..+..++...|++++|+..++++++++|+++. +|..++..+
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999985999999999999988496458999868899988186077899999999868012788988999999999999
Q ss_pred HHCCCHHHHHHHHHHHH
Q ss_conf 96599489999999998
Q 005512 556 ASSGKRIEANRIRALMK 572 (693)
Q Consensus 556 ~~~g~~~~A~~~~~~m~ 572 (693)
...+++++|.+.+++..
T Consensus 90 ~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHH
T ss_conf 99388999999999998
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.91 E-value=9.3e-05 Score=42.33 Aligned_cols=83 Identities=10% Similarity=-0.126 Sum_probs=29.2
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99559948999999997851599845999999999811899999999999688309998756899999997624998999
Q 005512 419 YGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498 (693)
Q Consensus 419 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 498 (693)
+.+.|++++|+..|++.....+-+...+..+..++.+.|++++|...++.+++ -.+.+...+..+...|...|++++|
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~g~~~~A 103 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHNANAA 103 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCHHHHHHHHHHCCCHHHH
T ss_conf 99876058999988610112111100123354564101258774100000111--1110000037899999997899999
Q ss_pred HHHHH
Q ss_conf 99998
Q 005512 499 REFIE 503 (693)
Q Consensus 499 ~~~~~ 503 (693)
.+.++
T Consensus 104 ~~~l~ 108 (112)
T d1hxia_ 104 LASLR 108 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.84 E-value=0.00022 Score=40.11 Aligned_cols=58 Identities=12% Similarity=-0.072 Sum_probs=28.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999999971598899999999985149999324999999999659948999999999
Q 005512 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 514 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 571 (693)
+..+...+...|++++|+..++++++.+|.+...|..++.+|...|+..+|.+.|+++
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 9999999988799057899999999849851999999999999855799999999999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=0.00012 Score=41.57 Aligned_cols=90 Identities=6% Similarity=-0.092 Sum_probs=38.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q ss_conf 9999976249989999999849-9999-962699999999715---98899999999985149999--324999999999
Q 005512 484 CMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIH---SNVELAEMAAKALFDLDAEN--PGRYVILSNIYA 556 (693)
Q Consensus 484 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~ 556 (693)
.+++.+...+++++|.+.|++. ...| +..++..+..++... ++.++|+.+++++++.+|.+ ..++..++.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 79887369999999999999988329998999999999999851267899999999999860699319999999999999
Q ss_pred HCCCHHHHHHHHHHHHH
Q ss_conf 65994899999999984
Q 005512 557 SSGKRIEANRIRALMKR 573 (693)
Q Consensus 557 ~~g~~~~A~~~~~~m~~ 573 (693)
+.|++++|.+.++++.+
T Consensus 84 ~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 97316999999999997
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.82 E-value=5.5e-05 Score=43.72 Aligned_cols=126 Identities=10% Similarity=-0.068 Sum_probs=62.1
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 95599489999999978515998459999999998118999999999996883099987568999999976249989999
Q 005512 420 GMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499 (693)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 499 (693)
.+.|++++|+..+++..+..+.|...+..+...++..|++++|...++...+. .+.....+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 88889999999999999978999999999999999879999999999999986--9973899999999998346637899
Q ss_pred HHHHHC--CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 999849--99999-6269999999971598899999999985149999324
Q 005512 500 EFIERM--PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547 (693)
Q Consensus 500 ~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 547 (693)
.-.... ...|+ ...+......+...|+.++|...++++.+..|..+..
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 875444203586479999999999996799899999999998339999810
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.73 E-value=0.00081 Score=36.63 Aligned_cols=51 Identities=16% Similarity=0.049 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCC
Q ss_conf 5988999999999851499993249999999996----5994899999999984899
Q 005512 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYAS----SGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 524 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 576 (693)
..+.+.|+..++++.+.+ ++..+..|+.+|.+ ..+.++|.+.+++..+.|.
T Consensus 195 ~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 195 TKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 310344454676653036--8999999999998399976189999999999998769
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=0.00055 Score=37.67 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=27.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999559948999999997851599845999999999811899999999999688
Q 005512 414 TMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471 (693)
Q Consensus 414 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 471 (693)
.+...+.+.|++++|+..|.+.....+.+...+..+..++...|++++|...++.+++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999859999999999999884964589998688999881860778999999998
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.57 E-value=0.00034 Score=38.93 Aligned_cols=27 Identities=11% Similarity=-0.111 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 499999999965994899999999984
Q 005512 547 RYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 547 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 573 (693)
.+..++.+|...|++++|...+++..+
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 775269999988888888999999998
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.56 E-value=0.0014 Score=35.17 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=17.1
Q ss_pred HHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999977039958999996006999992209999999992999048999999
Q 005512 83 LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133 (693)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 133 (693)
+.+.+-+.|.++.|..++..+.. |..++..+.+.+++..|.+.+.
T Consensus 20 i~~~c~~~~lye~A~~lY~~~~d------~~rl~~~~v~l~~~~~avd~~~ 64 (336)
T d1b89a_ 20 VGDRCYDEKMYDAAKLLYNNVSN------FGRLASTLVHLGEYQAAVDGAR 64 (336)
T ss_dssp ---------CTTTHHHHHHHTTC------HHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHCCC------HHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99999878779999999986789------9999999970315999999998
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.53 E-value=7.5e-05 Score=42.89 Aligned_cols=125 Identities=15% Similarity=0.042 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 59948999999997851599845999999999811----------89999999999968830999875689999999762
Q 005512 422 HGHGREALFLFDQMKALIKPDHITFVSVLSACSHA----------GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491 (693)
Q Consensus 422 ~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 491 (693)
.+.+++|+..|+...+.-|.+...+..+..++... +.+++|...++++++ --+.+...|..+..+|..
T Consensus 10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHH
T ss_conf 736999999999998618831089999999998762133336778878889999999887--301205877668999987
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 49989999999849999996269999999971598899999999985149999324999999999659948999999999
Q 005512 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 492 ~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 571 (693)
.|++ .++... ..++++.|...++++++++|++...+..|... .+|.+++.+.
T Consensus 88 ~g~~------------~~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~ 139 (145)
T d1zu2a1 88 FAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEA 139 (145)
T ss_dssp HHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHH
T ss_pred CCCC------------HHHHHH---------HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH-------HHHHHHHHHH
T ss_conf 0101------------135788---------98867876312110002598889999999999-------9979789999
Q ss_pred HHCCC
Q ss_conf 84899
Q 005512 572 KRRGV 576 (693)
Q Consensus 572 ~~~~~ 576 (693)
.++|+
T Consensus 140 ~k~~~ 144 (145)
T d1zu2a1 140 YKQGL 144 (145)
T ss_dssp HHSSS
T ss_pred HHHHC
T ss_conf 98735
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.50 E-value=0.0017 Score=34.66 Aligned_cols=16 Identities=25% Similarity=-0.022 Sum_probs=6.0
Q ss_pred CHHHHHHHHHHHHHCC
Q ss_conf 8899999999985149
Q 005512 526 NVELAEMAAKALFDLD 541 (693)
Q Consensus 526 ~~~~A~~~~~~~~~~~ 541 (693)
+.+.|...++++.+.+
T Consensus 233 n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 233 NEKQAIENFKKGCKLG 248 (265)
T ss_dssp CSTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCC
T ss_conf 8999999999999876
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.46 E-value=0.00011 Score=41.91 Aligned_cols=122 Identities=11% Similarity=0.098 Sum_probs=84.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHCCCHHH
Q ss_conf 998118999999999996883099987568999999976249989999999849-99999-6269999999971598899
Q 005512 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVEL 529 (693)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 529 (693)
-....|++++|...+++.++ .-+.+...+..++..|+..|++++|.+.++.. ...|+ ...+..+...+...+..++
T Consensus 5 ~aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 99888899999999999999--7899999999999999987999999999999998699738999999999983466378
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999998514-99993249999999996599489999999998489
Q 005512 530 AEMAAKALFDL-DAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 530 A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 575 (693)
+.......... .|++...+...+..+...|+.++|...+++..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 99875444203586479999999999996799899999999998339
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.37 E-value=0.0025 Score=33.66 Aligned_cols=71 Identities=8% Similarity=0.144 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHCCCCCHHH
Q ss_conf 9999999999559948999999997851599845999999999811899999999999688----3099987568
Q 005512 411 SWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR----DFGVAPRPEH 481 (693)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 481 (693)
.+..+...+...|++++|+..++++...-+-+...+..++.++...|+..+|.+.|+.+.+ +.|+.|...+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 999999999887990578999999998498519999999999998557999999999999998998489968999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.31 E-value=0.00012 Score=41.74 Aligned_cols=50 Identities=12% Similarity=-0.019 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHC
Q ss_conf 988999999999851499993249999999996599-----------48999999999848
Q 005512 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK-----------RIEANRIRALMKRR 574 (693)
Q Consensus 525 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~ 574 (693)
+.+++|+..++++++++|+++.+|..++.+|...|+ +++|.+.|++..+.
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8788899999998873012058776689999870101135788988678763121100025
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.21 E-value=0.0038 Score=32.59 Aligned_cols=27 Identities=15% Similarity=-0.228 Sum_probs=12.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 999999971598899999999985149
Q 005512 515 GSLLGACRIHSNVELAEMAAKALFDLD 541 (693)
Q Consensus 515 ~~ll~~~~~~g~~~~A~~~~~~~~~~~ 541 (693)
..+..++...|++++|+..+++++++.
T Consensus 104 ~~~g~~~~~lg~~eeA~~~~~~Al~l~ 130 (156)
T d2hr2a1 104 YSRALALDGLGRGAEAMPEFKKVVEMI 130 (156)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 526999998888888899999999866
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.0017 Score=34.74 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=44.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHC----C----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 99999976249989999999849----9----9999-6269999999971598899999999985149999324999999
Q 005512 483 ACMVDMLGRAGKLNEAREFIERM----P----IRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553 (693)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 553 (693)
-.+...+.+.|++++|...|++. + ..++ ..++..+..++.+.|++++|+..++++++++|+++.++..+..
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999977999999999999998865301476478999987268886577398887887798869297999999999
Q ss_pred H
Q ss_conf 9
Q 005512 554 I 554 (693)
Q Consensus 554 ~ 554 (693)
.
T Consensus 89 ~ 89 (95)
T d1tjca_ 89 F 89 (95)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=0.028 Score=27.35 Aligned_cols=25 Identities=16% Similarity=-0.027 Sum_probs=8.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999996599489999999998
Q 005512 548 YVILSNIYASSGKRIEANRIRALMK 572 (693)
Q Consensus 548 ~~~l~~~~~~~g~~~~A~~~~~~m~ 572 (693)
+..|+.+|.+.|++++|...++++.
T Consensus 49 l~~Lg~~~~~~g~~~~A~~~y~~aL 73 (95)
T d1tjca_ 49 LDYLSYAVYQQGDLDKALLLTKKLL 73 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9987268886577398887887798
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.80 E-value=0.21 Score=21.96 Aligned_cols=139 Identities=10% Similarity=-0.053 Sum_probs=64.6
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-CHHHH
Q ss_conf 95599489999999978515998459999999998118999999999996883099987568999999976249-98999
Q 005512 420 GMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG-KLNEA 498 (693)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A 498 (693)
...+++..+...+..|.........-..-+..+....|+.+.|...|..+.. .++ .|..|...-.... .+.
T Consensus 296 l~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~~Lg~~~~~~-- 367 (450)
T d1qsaa1 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQRIGEEYELK-- 367 (450)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHHHTTCCCCCC--
T ss_pred HHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC----CCC--HHHHHHHHHCCCCCCCC--
T ss_conf 8829869999999865846242899999999999983981568999999845----787--39999999829998998--
Q ss_pred HHHHHHCCCCCCHH-H---HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99998499999962-6---9999999971598899999999985149999324999999999659948999999999
Q 005512 499 REFIERMPIRPDAG-V---WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 499 ~~~~~~~~~~p~~~-~---~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 571 (693)
....+..+... . -..-+..+...|....|...+..+.... ++.-...++.+..+.|.++.|.....+.
T Consensus 368 ---~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 368 ---IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp ---CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ---CCCCCCCHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf ---67799567776313859899999998699469999999998679--9999999999999879846999999998
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.50 E-value=0.29 Score=21.19 Aligned_cols=140 Identities=10% Similarity=0.054 Sum_probs=78.2
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 95599489999999978515998459999999998118999999999996883099987568999999976249989999
Q 005512 420 GMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499 (693)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 499 (693)
...|..++..++..+... +.+..-|+.++--....-+-+...++++.+-+-+.+ ..++++....
T Consensus 13 ildG~ve~Gveii~k~~~--ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITK--SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHH--HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred HHHHHHHHHHHHHHHHCC--CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC--------------HHHHCHHHHH
T ss_conf 874248867999999846--677551244545243000268999999987634085--------------2432678999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 999849999996269999999971598899999999985149999324999999999659948999999999848994
Q 005512 500 EFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577 (693)
Q Consensus 500 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 577 (693)
..+-.+. .+..-....+.....+|.-+.-..+++.+++.+..++....-++.+|.+.|...++.+++.+.-++|++
T Consensus 77 ~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 77 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHC--CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 9998836--218999999999998260878999999987537998799999999998852244489999999997599
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=86.72 E-value=0.52 Score=19.62 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCC
Q ss_conf 88999999999851499993249999999996----599489999999998489
Q 005512 526 NVELAEMAAKALFDLDAENPGRYVILSNIYAS----SGKRIEANRIRALMKRRG 575 (693)
Q Consensus 526 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 575 (693)
|.++|.+.+++..+.+ ++.....|+.+|.. ..+.++|.+++++..+.|
T Consensus 74 d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCC--CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 3578888875000257--406778999999829846778999999999999878
|