Citrus Sinensis ID: 005546

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-
Protein Sequence
MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGAKKERDTPDIISKELLSGPKVILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVRKLYLNHIKLVLFTSYSMSIEHQDLCGLFYFQISVLAGKCLKNYWIHVISCI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEEccccEEEEEEEEcccccccccccccccccEEcccccccEEEEEEEcccccEEEEEEccEEEEEEcccccccccccEEEEEEEEEccEEEEcccccccEEEEEEEcccccEEEEEEcccEEEEEEcccccccccEEEEccccccccccccccccEEEEEcccccccccEEEEEEEccccEEEEEcccccccccccHHHHHHHHHHHHcccccccHHHHHccHHHHHHHHHHccccccccccccccccEEEccccccccccEEccccEEcccccccccccccccccccccHHHHHcccccccEEEEEEcccEEEEEEEccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccEEEEEEccccEEEEcccHHHHHHccccccccccccEEEEEEcccccccccccEEEEEEcccccccEEEEEEcccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccEEEEEHHHccccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEEEEccccccccccccccccccccccccccEEEEccccEEEEEcccccEEEEEEEEcccccccHHHccccccEEcccccccEEEEEEEEcccccEEEEEccccEEEEEEccccccccccEEEEEEEEcccHHcccccccEEEEEEEEccccccEEEEEEcccEEEEEEcccccccccEEEEEcccccccccccccccEEEEEcccccccccEEEEEEEccccEEEEEccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccccccccEcccccccccccEEcccccccEEEEEEEcccccEEEEEEEcccEEEEEEcccccccEEccccccccccccHHHEccEEEEEcccccccccccccccccccccccccccHHHHHHHHHccccccccccEEEEEcccccccEEEEEEcccccEEEEccccHHHHHccccHcccccccccccccccccccccccEEEEEEccccccEEEEEEEEccccEEEEEEcccccccccEEccccccHHHHcccccccccHHcHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccEEEcHHHHHHHHHEHHEHHHHHHcccEEEEEEEcc
Coil and Loop (DISEMBL)
mrfnfdlsepstdsrlsltpkeevewvplqkhpvfsapdavrngggkfngapknlvawdgasrlyywdqNAQCLHRIsvrlgepdptsilaafpskvmradvkLNFEVSRISINRNGSALLLIGSDGLCVMYLygrtcssdnktiicrtvsvgsqiyfssSNVIRTLqvswhpysdthlgilssdSVFRLFNLasdvmqpeqeyylqpvepgryrnaasicpvdfsfggdhlwdrFSVFVLfsdgsiyilcpvvpfgsvyKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEatfpevaqetidegdppalkahphalfdssvslqgplrkichggedeslavrgaecEGRAVSFLYNLVSKDSIvvtswsggqlqIDALAdeiqpvwtvnipprlrvdsqdriHGLAMicepisgelpvvkldqpldhtvwlghpppllrlatvdlalpkntesgsiitmSIDPLMQERIYivhdggidsvvlhflpftsqtrgkdetnrspsvhpvlntcqgetsspsplcgfvslsdsfgyswivgvtSTQECVVIEMKTWNLllpvqidsekksvdlgakkerdtpdiiskellsgpkvillpqaspnlrsvaadsiegrSTLHQYFNLFQENYVEYAHKVRKLYLNHIKLVLFTSYSMSIEHQDLCGLFYFQISVLAGKCLKNYWIHVISCI
Flexible Loop (DISEMBL)
mrfnfdlsepstdsrlsltpKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSqtrgkdetnrspSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWnlllpvqidsekksvdlgakkerdtpdiiskellsgpkVILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVRKLYLNHIKLVLFTSYSMSIEHQDLCGLFYFQISVLAGKCLKNYWIHVISCI
Low Complexity Region (SEG)
MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGAKKERDTPDIISKELLSGPKVILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVRKLYLNHIKLVLFTSYSMSIEHQDLCGLFYFQISVLAGKCLKNYWIHVISCI
Disordered region (IsUnstruct)
*************************WVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQ*****************LF***VSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFT*******************************LCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLPVQID************************L*GPKVILLP********VAADSIEGRSTLHQYFNLFQENYVEYAHKVRKLYLNHIKLVLFTSYSMSIEHQDLCGLFYFQISVLAGKCLKNYWIHVISC*
Disordered Region (DISOPRED)
***************************PLQKHP**********************VAWDGASRLYYWDQNAQCLHRISV******************MRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYG************RTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYL**************CPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQ************RNSSLAISWLEATFP********************ALFDSSVSLQGPLRKICH*******AVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQ******************IHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLAT********T*SGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLP*******************************SPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTW************************************************************STLHQYFNLFQENYVEYAHKVRKLYLNHIKL*********IEHQDLCGLFYFQISVLAGKCLKNYWIHVISCI
Disordered Region (DISEMBL)
*****************LTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQ***********SVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGAKKERDTPDIISKELLSGPKVILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVRKLYLNHIKLVLFTSYSMSIEHQDLCGLFYFQISVLAGKCLKNYWIHVISCI
Disordered Region (DISPRO)
********************KEEVEWVPLQKHPVFSAP**********NGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPG*****ASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKD*TNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKS*D****KERDTPDIISKELLSGPKVILLPQ********AADSIEGRSTLHQYFNLFQENYVEYAHKVRKLYLNHIKLVLFTSYSMSIEHQDLCGLFYFQISVLAGKCLKNYWIHVISCI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGAKKERDTPDIISKELLSGPKVILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVRKLYLNHIKLVLFTSYSMSIEHQDLCGLFYFQISVLAGKCLKNYWIHVISCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	691
225448406	814	PREDICTED: uncharacterized protein LOC10	0.921	0.782	0.735	0.0
255587898	760	conserved hypothetical protein [Ricinus	0.839	0.763	0.692	0.0
449463056	782	PREDICTED: uncharacterized protein LOC10	0.846	0.748	0.697	0.0
356537982	806	PREDICTED: uncharacterized protein LOC10	0.891	0.764	0.686	0.0
357461195	874	Nuclear pore complex protein-related pro	0.910	0.719	0.657	0.0
15239202	810	nuclear pore complex protein-like protei	0.921	0.786	0.631	0.0
110737974	810	hypothetical protein [Arabidopsis thalia	0.921	0.786	0.629	0.0
297806585	810	hypothetical protein ARALYDRAFT_487368 [	0.921	0.786	0.621	0.0
224101133	642	predicted protein [Populus trichocarpa]	0.661	0.711	0.753	0.0
326530820	880	predicted protein [Hordeum vulgare subsp	0.874	0.686	0.477	1e-163

>gi|225448406|ref|XP_002271517.1| PREDICTED: uncharacterized protein LOC100265724 [Vitis vinifera] gi|297736620|emb|CBI25491.3| unnamed protein product [Vitis vinifera]

 Score =  987 bits (2551), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/646 (73%), Positives = 549/646 (84%), Gaps = 9/646 (1%)

Query: 1   MRFNFDLSEPSTDSRLS---LTPKEEVEWVPLQKHPVFSAPDAV----RNGGGKFNGAPK 53
           MR+NFD+ E       +    TPKEEV+W+PLQ HP+F+   A       G    +   +
Sbjct: 1   MRYNFDVPEKEEQQPRAPSPATPKEEVQWIPLQNHPIFTTATATATAASTGHPSAHRTAR 60

Query: 54  NLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISI 113
           NL+AWDGASRLY+WD   +C+HRIS+RLGEPDPTS+LA  PSKV++ADV+LNF V RISI
Sbjct: 61  NLMAWDGASRLYFWDSVKKCIHRISIRLGEPDPTSVLADSPSKVLQADVQLNFVVDRISI 120

Query: 114 NRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHP 173
           NRNGSALLL GSDGLC+MYLYGRT ++DN TIICR+VS+GSQIYF+S+NVIR LQVSWHP
Sbjct: 121 NRNGSALLLAGSDGLCIMYLYGRTSTTDN-TIICRSVSIGSQIYFNSNNVIRALQVSWHP 179

Query: 174 YSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLW 233
            SDTHLGILSSDSVFR+F+L+SDV  PEQEYYLQPV+PG+ RNAASICPVDFSFG DHLW
Sbjct: 180 SSDTHLGILSSDSVFRIFDLSSDVGLPEQEYYLQPVDPGKSRNAASICPVDFSFGADHLW 239

Query: 234 DRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAIS 293
           DRFSVF+LFSDGSIYILCPVVPFGSVYKWESILEIYNDA TFGL+S NS AV NS+LAIS
Sbjct: 240 DRFSVFILFSDGSIYILCPVVPFGSVYKWESILEIYNDAHTFGLKSANSTAVSNSNLAIS 299

Query: 294 WLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECE 353
           WLEATFPE+A +  + G+   LKAHP+ALFD+S+SLQGPLRK+C+GGE+E LAVR AECE
Sbjct: 300 WLEATFPELAHQATEGGNLSMLKAHPYALFDASLSLQGPLRKVCNGGEEEFLAVRVAECE 359

Query: 354 GRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAM 413
           GRAVSFLYNLVSKDSI+VT+WSGGQLQIDALADEIQPVW    PPR+RVDS DRI GLAM
Sbjct: 360 GRAVSFLYNLVSKDSILVTAWSGGQLQIDALADEIQPVWIAGSPPRVRVDSLDRILGLAM 419

Query: 414 ICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQE 473
           ICE I  EL VVKLDQP D T WLGHPPPLLRLA +DLALP+N ESGS+I++ +DPL+ E
Sbjct: 420 ICESIPCELSVVKLDQPPDQTFWLGHPPPLLRLAIIDLALPRNMESGSLISLFVDPLIPE 479

Query: 474 RIYIVHDGGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLS 533
           RIY +HDGGIDS+VLHFLPFTS+  GK+ET R+PSVHPVL+TCQ E+SS SP+CGFV+LS
Sbjct: 480 RIYSLHDGGIDSIVLHFLPFTSEATGKNETMRTPSVHPVLSTCQAESSSSSPICGFVALS 539

Query: 534 DSFGYSWIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGAKKERDTPDIISKELLS 593
           DSFGYSWIV VTS+QEC+V+EMK+ NLL+PV +D E K + L   K+ DTP++ISKELLS
Sbjct: 540 DSFGYSWIVAVTSSQECIVLEMKSLNLLIPVHVDIE-KDISLEEPKQIDTPNVISKELLS 598

Query: 594 GPKVILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKV 639
           GPKV+ +PQ SPNLRSVAADSIEGRSTLHQYF LF ENYVEYAHKV
Sbjct: 599 GPKVVFIPQTSPNLRSVAADSIEGRSTLHQYFKLFHENYVEYAHKV 644

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587898|ref|XP_002534434.1| conserved hypothetical protein [Ricinus communis] gi|223525302|gb|EEF27949.1| conserved hypothetical protein [Ricinus communis]

 Score =  874 bits (2257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/622 (69%), Positives = 495/622 (79%), Gaps = 42/622 (6%)

Query: 18  LTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRI 77
           LTPKE+++WVPL  HP+F+               P+NL+AWDG+SRLYYWD N QCLHRI
Sbjct: 13  LTPKEDIQWVPLTSHPLFATTTGTA----AAATPPRNLLAWDGSSRLYYWDSNKQCLHRI 68

Query: 78  SVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRT 137
           S+RLG+P+PTS+LA+ PSKV+RADV +NF V+ ISIN+NG+AL L GSDGLCV+YLYGR 
Sbjct: 69  SIRLGDPEPTSVLASIPSKVLRADVDINFVVNNISINKNGTALFLSGSDGLCVIYLYGRA 128

Query: 138 CSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDV 197
            + DN  IICRTVSVGSQIYF+ ++VIRTLQ                             
Sbjct: 129 NAKDN-AIICRTVSVGSQIYFNENSVIRTLQ----------------------------- 158

Query: 198 MQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFG 257
                EYYLQPVEPGR RNA+SICPVDFSFGGDHLWDRFSVF+LFSDG IYILCP+VPFG
Sbjct: 159 -----EYYLQPVEPGRSRNASSICPVDFSFGGDHLWDRFSVFILFSDGLIYILCPIVPFG 213

Query: 258 SVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPALKA 317
           SV+K ES+LEIY+DAQTFGL+S N  AV NS+ AISWLEATFPE+  E I+  D   LKA
Sbjct: 214 SVHKLESVLEIYSDAQTFGLKSTNQTAVSNSNFAISWLEATFPELNDEAIERDDLLTLKA 273

Query: 318 HPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGG 377
            P+ALFD+S+ LQGPLRK+ HGGEDE  AVRG +CEG A+SFLYN+VSKDSI+VT+WSGG
Sbjct: 274 RPYALFDASLCLQGPLRKV-HGGEDEYSAVRGTQCEGCAISFLYNIVSKDSILVTAWSGG 332

Query: 378 QLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWL 437
           QLQIDALADEIQPVWTV  PPRL VDS D I  +AMICE ISGE+PVVKLDQPLDHTVWL
Sbjct: 333 QLQIDALADEIQPVWTVGSPPRLHVDSHDHILAVAMICESISGEIPVVKLDQPLDHTVWL 392

Query: 438 GHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQT 497
           GHPPPLLRLA VDLALP+  ESGS ITM  DPL+ E+IY VHDGGIDS++LHFLPFTSQ+
Sbjct: 393 GHPPPLLRLAIVDLALPRKMESGSKITMFADPLLPEKIYSVHDGGIDSILLHFLPFTSQS 452

Query: 498 RGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKT 557
            GKDET R+PSVHP+L+T Q + S  SPLCGFV+LSD+FGYSWI+GVTS QEC+V+EMKT
Sbjct: 453 CGKDETLRTPSVHPLLSTRQADNS--SPLCGFVTLSDAFGYSWIIGVTSMQECIVLEMKT 510

Query: 558 WNLLLPVQIDSEKKSVDLGAKKERDTPDIISKELLSGPKVILLPQASPNLRSVAADSIEG 617
           W+ LL   +D EKKS     +KE +T DIISKELLSGPKV+LLPQASPNLRSVAADSIEG
Sbjct: 511 WDSLLLSHVDVEKKSPGSEERKEGNTLDIISKELLSGPKVVLLPQASPNLRSVAADSIEG 570

Query: 618 RSTLHQYFNLFQENYVEYAHKV 639
           RS LHQYF LF ENYVEYAHKV
Sbjct: 571 RSALHQYFKLFHENYVEYAHKV 592

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463056|ref|XP_004149250.1| PREDICTED: uncharacterized protein LOC101216348, partial [Cucumis sativus]

 Score =  874 bits (2257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/592 (69%), Positives = 493/592 (83%), Gaps = 7/592 (1%)

Query: 53  KNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRIS 112
           +NL+A DGASRLY+WD    CLHRIS+RLGEP+PTS+LAA PSKV++ DV+L+F V +IS
Sbjct: 22  RNLLASDGASRLYFWDSTKLCLHRISIRLGEPEPTSVLAASPSKVLQPDVQLDFVVQKIS 81

Query: 113 INRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWH 172
           IN+NGSAL L+GS GLC+MYLYG + +SDN T+ICRTV VG QIY    +VIRTLQVSWH
Sbjct: 82  INQNGSALALVGSGGLCIMYLYGHSSTSDNNTVICRTVRVGPQIYCGGHDVIRTLQVSWH 141

Query: 173 PYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHL 232
           PYS+ HLG+LSSDSVFRLFNL++D++QPEQEYYLQPVEPG+ +NA SICPVDFSFG DHL
Sbjct: 142 PYSNFHLGVLSSDSVFRLFNLSTDLVQPEQEYYLQPVEPGQSKNATSICPVDFSFGEDHL 201

Query: 233 WDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAI 292
           WD+FSVFVLFSDGSIYILCPVVPF SVYK ESILEIYNDAQ+FGL+S N  AV NSSLAI
Sbjct: 202 WDKFSVFVLFSDGSIYILCPVVPFRSVYKCESILEIYNDAQSFGLKSPNPTAV-NSSLAI 260

Query: 293 SWLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAEC 352
           SWLE TFP + Q T D GD   + A P ALFD+S++LQGPLR+ C+ G++  ++++GAEC
Sbjct: 261 SWLEETFPNLVQAT-DGGDAYMIVAQPCALFDASLALQGPLRRACNNGDEGDISIKGAEC 319

Query: 353 EGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLA 412
           EGRAVS LYNL+SKDS++VT+WSGGQLQIDALADEIQPVW +  PPR+RVD  D I GLA
Sbjct: 320 EGRAVSLLYNLISKDSVLVTAWSGGQLQIDALADEIQPVWNLGNPPRVRVDPNDNILGLA 379

Query: 413 MICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQ 472
           MICE ++ +L  VKLDQPLDHTVW G PPPLLRLA VDLALPK  E  S+ITM  D LM 
Sbjct: 380 MICEVVTRKLTKVKLDQPLDHTVWSGLPPPLLRLAIVDLALPKKMEKDSLITMFADKLMD 439

Query: 473 ERIYIVHDGGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSL 532
           +RIY +H+GGIDS++LHFLPFTSQ+RG+++T R+PSVHPVLNTCQG+TSSP PLCGF SL
Sbjct: 440 QRIYALHNGGIDSIILHFLPFTSQSRGQNQTMRTPSVHPVLNTCQGDTSSPFPLCGFASL 499

Query: 533 SDSFGYSWIVGVTSTQECVVIEMKTWNLLLPVQI-----DSEKKSVDLGAKKERDTPDII 587
           SDS GYSWI+G+T + EC+V+EMKTWNLL+PVQ+     + +  +   G + E + P+II
Sbjct: 500 SDSLGYSWILGITLSHECIVLEMKTWNLLVPVQVSNFLYEGKSAAAATGERNESERPEII 559

Query: 588 SKELLSGPKVILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKV 639
           SK+LL GPKV+LLPQ+S  +RSV ADSIEGRS LHQYF LF ENYVEYAH V
Sbjct: 560 SKDLLGGPKVVLLPQSSSTMRSVTADSIEGRSMLHQYFKLFHENYVEYAHAV 611

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537982|ref|XP_003537485.1| PREDICTED: uncharacterized protein LOC100801853 [Glycine max]

 Score =  867 bits (2240), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/632 (68%), Positives = 505/632 (79%), Gaps = 16/632 (2%)

Query: 17  SLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHR 76
           S TPKEEVEWVPL KHP+F+A             A +NL+AWDGASRLY+WD N +CLHR
Sbjct: 20  SQTPKEEVEWVPLPKHPLFTAHGGATT-----AAASRNLLAWDGASRLYFWDSNKRCLHR 74

Query: 77  ISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGR 136
           +S+RLG+PDP+S+LAA PSKV+++D  L+F+V +ISINR G+A+LL GS+ L VMYLYGR
Sbjct: 75  LSLRLGDPDPSSVLAASPSKVLQSDAVLDFDVRKISINRKGTAILLFGSETLSVMYLYGR 134

Query: 137 TCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASD 196
               D   +ICRT+++GSQ Y +  N IR LQ  WHPYSDTHLGILSSDSVFRLFNLA D
Sbjct: 135 ASKKD-VNLICRTITIGSQTYCTGGNDIRVLQALWHPYSDTHLGILSSDSVFRLFNLAVD 193

Query: 197 VMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPF 256
            +QPEQEYYLQPVEPGR R A+S+CPVDFSFGGDHLWDRFSVF+LFS+G+IY+LCPVVPF
Sbjct: 194 PLQPEQEYYLQPVEPGRTRKASSLCPVDFSFGGDHLWDRFSVFILFSNGAIYVLCPVVPF 253

Query: 257 GSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPALK 316
           GS++K ES++EIYNDA TFG  S NS+A  NS LAISWLEA FPE+  +         LK
Sbjct: 254 GSLFKCESLVEIYNDAHTFGKISANSVAASNSKLAISWLEAAFPELQNQETKGDSLSLLK 313

Query: 317 AHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSG 376
           AH +ALFD+S+ LQGPLR++   G ++S+  R AECEGRAVSFLYNLVSKDSI+VT+WSG
Sbjct: 314 AHSYALFDASLVLQGPLRRVGQDGNEDSVG-RSAECEGRAVSFLYNLVSKDSILVTAWSG 372

Query: 377 GQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVW 436
           GQLQIDALADEIQPVW+V  PPRLRVDS D+I GLAMICE I+    + K    LDH  W
Sbjct: 373 GQLQIDALADEIQPVWSVGSPPRLRVDSHDQILGLAMICESIASS-SLWK----LDHNAW 427

Query: 437 LGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQ 496
           LG+PPPLLRLA VDLALP+  ESG  I++ ID LM ERIY +HDGGIDS+VLHFLPFTSQ
Sbjct: 428 LGNPPPLLRLAIVDLALPRKAESGYNISLFIDTLMPERIYSLHDGGIDSIVLHFLPFTSQ 487

Query: 497 TRGKDETNRSPSVHPVLNTCQ-GETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEM 555
           T GKD+T ++PSVHPVLNTCQ G TS PS LCGFVSLSDSFGYSWIV +T + ECVV+EM
Sbjct: 488 TNGKDDTMKTPSVHPVLNTCQSGFTSEPS-LCGFVSLSDSFGYSWIVTITLSLECVVLEM 546

Query: 556 KTWNLLLPVQIDSEKKSVDL-GAKKERDTPDIISKELLSGPKVILLPQASPNLRSVAADS 614
           K+WNLLLPV ID EKK +   G  K RD P IISKELLSGP+ +L+PQASP+LRSVAADS
Sbjct: 547 KSWNLLLPVSIDMEKKPISSEGESKGRDIPTIISKELLSGPREVLVPQASPSLRSVAADS 606

Query: 615 IEGRSTLHQYFNLFQENYVEYAHKVRKLYLNH 646
           IEGRSTLHQYF LF E YVEYAHKV  L L H
Sbjct: 607 IEGRSTLHQYFKLFHETYVEYAHKVY-LELKH 637

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461195|ref|XP_003600879.1| Nuclear pore complex protein-related protein [Medicago truncatula] gi|355489927|gb|AES71130.1| Nuclear pore complex protein-related protein [Medicago truncatula]

 Score =  860 bits (2222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/640 (65%), Positives = 508/640 (79%), Gaps = 11/640 (1%)

Query: 17  SLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHR 76
           S TPKEE+EW  L KHP+F+         G  N   +NL+A+DGA+RLY WD     LHR
Sbjct: 13  STTPKEELEWHQLPKHPLFTTTTTTHTASG--NSVSRNLLAYDGANRLYLWDSKNNHLHR 70

Query: 77  ISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGR 136
           +S+RLG+PDPTS+LAA PSKV++ D+ L+FEV+RISINRNG+A+LL G++ LCVMYLYGR
Sbjct: 71  LSLRLGDPDPTSVLAASPSKVLQTDIVLDFEVNRISINRNGTAMLLFGNERLCVMYLYGR 130

Query: 137 TCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASD 196
           T   D+  +ICRT+SVGSQ +   +N IR L+ SWHPYSDTHLGILSSDSVFRLFNLA D
Sbjct: 131 TSKKDDVNLICRTISVGSQTHSLGNNDIRVLEASWHPYSDTHLGILSSDSVFRLFNLAVD 190

Query: 197 VMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPF 256
           +++PEQEYYLQP  PGR RNA+S+CPV FSFGGDHLWDRFSVFV FSDGSIY++CPVVPF
Sbjct: 191 LLEPEQEYYLQPAGPGRSRNASSMCPVGFSFGGDHLWDRFSVFVAFSDGSIYVICPVVPF 250

Query: 257 GSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPAL- 315
           GS+++ ES+LEIYNDA TFGL S NS+A  N++ AISWLEATFPE+  + I EGD  +  
Sbjct: 251 GSLFQCESLLEIYNDAHTFGLMSTNSVATSNATYAISWLEATFPELQNQEI-EGDSLSFS 309

Query: 316 KAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWS 375
           +A  +A+FD+S+ LQGPLR++   G ++S+  R AECEGRAVSFLYN VSKDSI+VT+WS
Sbjct: 310 RARAYAVFDASLVLQGPLRRVGQSGNEDSVG-RSAECEGRAVSFLYNSVSKDSILVTAWS 368

Query: 376 GGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTV 435
           GGQLQIDALADEIQPVW+V  PPRLR+DS+D I GLAMICE I+         + LDH  
Sbjct: 369 GGQLQIDALADEIQPVWSVGSPPRLRLDSRDDILGLAMICESIA-----CSRMEKLDHNA 423

Query: 436 WLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTS 495
           WLG+PPPLLRLA VDLALP+  ESG  I++ ID LM ERIY +HDGGIDS+VLHFLPFTS
Sbjct: 424 WLGNPPPLLRLAIVDLALPRRAESGYNISLFIDTLMPERIYSLHDGGIDSIVLHFLPFTS 483

Query: 496 QTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEM 555
           QT GKD+T R+PSVHPVLNTCQ  ++S   +CGFVSLSDSFGYSWIV VT +QECVV+EM
Sbjct: 484 QTNGKDDTMRTPSVHPVLNTCQNGSASEPSICGFVSLSDSFGYSWIVAVTLSQECVVLEM 543

Query: 556 KTWNLLLPVQIDSEKKSVD-LGAKKERDTPDIISKELLSGPKVILLPQASPNLRSVAADS 614
           KTW+LLLP+ ID EKK++  +G   ERD   IISKELLSGPK +L+P AS +LR+VAADS
Sbjct: 544 KTWDLLLPLSIDMEKKNIQSVGQSNERDIQPIISKELLSGPKEVLVPWASQSLRAVAADS 603

Query: 615 IEGRSTLHQYFNLFQENYVEYAHKVRKLYLNHIKLVLFTS 654
           IEGRSTLHQYF LF E YVEYAHKV   Y   ++ + +T+
Sbjct: 604 IEGRSTLHQYFKLFHETYVEYAHKVGLQYHPKMRTLEWTN 643

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239202|ref|NP_196187.1| nuclear pore complex protein-like protein [Arabidopsis thaliana] gi|9759093|dbj|BAB09662.1| unnamed protein product [Arabidopsis thaliana] gi|332003525|gb|AED90908.1| nuclear pore complex protein-like protein [Arabidopsis thaliana]

 Score =  833 bits (2153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/640 (63%), Positives = 493/640 (77%), Gaps = 3/640 (0%)

Query: 1   MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDG 60
           M+FNF+ +E + DSR S TPKE V WVPLQ HPVF++  + ++        P+N +AWDG
Sbjct: 1   MKFNFNETEDAPDSRRSPTPKEPVRWVPLQSHPVFASLPSSQDEPAVSQLFPRNFMAWDG 60

Query: 61  ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSAL 120
            SR+YYWD     LHR+S+RLGEP+P+S+LAA PSKVM+ D+++ F VS+ISIN++GSA+
Sbjct: 61  DSRVYYWDSRRYLLHRLSLRLGEPEPSSVLAAVPSKVMQPDLQVTFSVSKISINKSGSAV 120

Query: 121 LLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLG 180
           LL GSDG+CVMYL+GR    ++  +ICR VS+GS+IY SS + I  LQ SWHP SDTHLG
Sbjct: 121 LLAGSDGICVMYLFGRASVIED-NVICRVVSIGSEIYTSSDSAITLLQASWHPDSDTHLG 179

Query: 181 ILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFV 240
           ILSSD+VFRLF+L+SD   PEQEYYLQP EPGR R A+SI P DFSFGGDHLWDRF+VF+
Sbjct: 180 ILSSDAVFRLFDLSSDTELPEQEYYLQPGEPGRSRTASSIYPADFSFGGDHLWDRFTVFI 239

Query: 241 LFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFP 300
           LF+DGSIYILCPVVPFGSVYKWES++EIYNDA  +G++S NSLAV NSSLAI WLEATFP
Sbjct: 240 LFTDGSIYILCPVVPFGSVYKWESVMEIYNDANMYGVKSSNSLAVSNSSLAIEWLEATFP 299

Query: 301 EVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFL 360
           ++ ++     +   +KA P+AL D+S++LQGPL K   G  DE  AVR AEC+GRAVS L
Sbjct: 300 DLTEQGTRGENILVVKAQPYALLDASLALQGPLYKASSGDGDEDFAVREAECKGRAVSLL 359

Query: 361 YNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISG 420
           YNLVSKDSI+VT+WS GQLQ+DAL DEIQPVW      RLR++S ++I G+AMICE    
Sbjct: 360 YNLVSKDSILVTAWSAGQLQVDALVDEIQPVWISGNSSRLRMNSHNKIQGVAMICESNIS 419

Query: 421 ELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHD 480
           ELPV   + PLDHTVWLGHPPPLLRLA VDLALPK  E GS++T+  D L+ ERIY +HD
Sbjct: 420 ELPVATSNLPLDHTVWLGHPPPLLRLAMVDLALPKMREGGSLVTLFADSLLPERIYSLHD 479

Query: 481 GGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSW 540
           GGIDS VLH LPFTSQ  GKDE  ++PSVH VL+TCQ E S+ SPL GFV LSDSFGYSW
Sbjct: 480 GGIDSTVLHSLPFTSQASGKDEALKTPSVHTVLSTCQ-EESAVSPLLGFVPLSDSFGYSW 538

Query: 541 IVGVTSTQECVVIEMKTWNLLLPVQIDSEKK-SVDLGAKKERDTPDIISKELLSGPKVIL 599
           IV V S+ EC+V EMKTW+LLLP+ + ++K  S     KKE++   IISKELL+GPK+ +
Sbjct: 539 IVAVLSSGECIVAEMKTWDLLLPIHVSTDKTVSSSAIEKKEQENSCIISKELLAGPKIRI 598

Query: 600 LPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKV 639
            P A PN RS  A+S+EGRS L  Y  LF ENY+EYAHKV
Sbjct: 599 APHALPNQRSTPANSVEGRSILLDYVKLFHENYIEYAHKV 638

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110737974|dbj|BAF00923.1| hypothetical protein [Arabidopsis thaliana]

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/640 (62%), Positives = 492/640 (76%), Gaps = 3/640 (0%)

Query: 1   MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDG 60
           M+FNF+ +E + DSR S TPKE V WVPLQ HPVF++  + ++        P+N +AWDG
Sbjct: 1   MKFNFNETEDAPDSRRSPTPKEPVRWVPLQSHPVFASLPSSQDEPAVSQLFPRNFMAWDG 60

Query: 61  ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSAL 120
            SR+YYWD     LHR+S+RLGEP+P+S+LAA PSKVM+ D+++ F VS+ISIN++GSA+
Sbjct: 61  DSRVYYWDSRRYLLHRLSLRLGEPEPSSVLAAVPSKVMQPDLQVTFSVSKISINKSGSAV 120

Query: 121 LLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLG 180
           LL GSDG+CVMYL+GR    ++  +ICR VS+GS+IY SS + I  LQ SWHP SDTHLG
Sbjct: 121 LLAGSDGICVMYLFGRASVIED-NVICRVVSIGSEIYTSSDSAITLLQASWHPDSDTHLG 179

Query: 181 ILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFV 240
           ILSSD+VFRLF+L+SD   PEQEYYLQP EPGR R A+SI P DFSFGGDHLWDRF+VF+
Sbjct: 180 ILSSDAVFRLFDLSSDTELPEQEYYLQPGEPGRSRTASSIYPADFSFGGDHLWDRFTVFI 239

Query: 241 LFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFP 300
           LF+D SIYILCPVVPFGSVYKWES++EIYNDA  +G++S NSLAV NSSLAI WLEATFP
Sbjct: 240 LFTDDSIYILCPVVPFGSVYKWESVMEIYNDANMYGVKSSNSLAVSNSSLAIEWLEATFP 299

Query: 301 EVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFL 360
           ++ ++     +   +KA P+AL D+S++LQGPL K   G  DE  AVR AEC+GRAVS L
Sbjct: 300 DLTEQGTRGENILVVKAQPYALLDASLALQGPLYKASSGDGDEDFAVREAECKGRAVSLL 359

Query: 361 YNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISG 420
           YNLVSKDSI+VT+WS GQLQ+DAL DEIQPVW      RLR++S ++I G+AMICE    
Sbjct: 360 YNLVSKDSILVTAWSAGQLQVDALVDEIQPVWISGNSSRLRMNSHNKIQGVAMICESNIS 419

Query: 421 ELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHD 480
           ELPV   + PLDHTVWLGHPPPLLRLA VDLALPK  E GS++T+  D L+ ERIY +HD
Sbjct: 420 ELPVATSNLPLDHTVWLGHPPPLLRLAMVDLALPKMREGGSLVTLFADSLLPERIYSLHD 479

Query: 481 GGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSW 540
           GGIDS VLH LPFTSQ  GKDE  ++PSVH VL+TCQ E S+ SPL GFV LSDSFGYSW
Sbjct: 480 GGIDSTVLHSLPFTSQASGKDEALKTPSVHTVLSTCQ-EESAVSPLLGFVPLSDSFGYSW 538

Query: 541 IVGVTSTQECVVIEMKTWNLLLPVQIDSEKK-SVDLGAKKERDTPDIISKELLSGPKVIL 599
           IV V S+ EC+V EMKTW+LLLP+ + ++K  S     KKE++   IISKELL+GPK+ +
Sbjct: 539 IVAVLSSGECIVAEMKTWDLLLPIHVSTDKTVSSSAIEKKEQENSCIISKELLAGPKIRI 598

Query: 600 LPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKV 639
            P A PN RS  A+S+EGRS L  Y  LF ENY+EYAHKV
Sbjct: 599 APHALPNQRSTPANSVEGRSILLDYVKLFHENYIEYAHKV 638

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806585|ref|XP_002871176.1| hypothetical protein ARALYDRAFT_487368 [Arabidopsis lyrata subsp. lyrata] gi|297317013|gb|EFH47435.1| hypothetical protein ARALYDRAFT_487368 [Arabidopsis lyrata subsp. lyrata]

 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/640 (62%), Positives = 487/640 (76%), Gaps = 3/640 (0%)

Query: 1   MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDG 60
           MRFNF   E + DSR S TPKE V WVPLQ HPVF++  + ++        P+N +AWDG
Sbjct: 1   MRFNFQEPEDTPDSRRSPTPKEPVRWVPLQSHPVFASLPSSQDEPTPSQRFPRNFMAWDG 60

Query: 61  ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSAL 120
            SRLYYWD     LHR S+RLGEP+P+S+LAA PSKVM+ D+++   VS+ISIN++GSA+
Sbjct: 61  DSRLYYWDSRRYLLHRFSLRLGEPEPSSVLAAVPSKVMQPDLQMTISVSKISINKSGSAV 120

Query: 121 LLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLG 180
           LL GSDG+CVMYL+GR    ++  +ICR VS+GS+IY S  + I  LQ SWHP SDTHLG
Sbjct: 121 LLAGSDGICVMYLFGRASVVED-NVICRVVSIGSEIYTSGDSAINLLQASWHPDSDTHLG 179

Query: 181 ILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFV 240
           ILSSD+VFRLF+L+ D   PEQEYYLQP EPG  R A+SI P DFSFGG+HLWDRF+VF+
Sbjct: 180 ILSSDAVFRLFDLSYDAELPEQEYYLQPGEPGSSRTASSIYPADFSFGGEHLWDRFTVFI 239

Query: 241 LFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFP 300
           LF+DGSIYILCPVVPFGSVYKWESI+EIY+DA  +G++S NS+AV NSSLAI WLEATFP
Sbjct: 240 LFTDGSIYILCPVVPFGSVYKWESIMEIYHDANMYGVKSSNSIAVSNSSLAIEWLEATFP 299

Query: 301 EVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFL 360
           ++ ++     +   +KAHP+AL D+S++LQGPL K  +G  DE  AVR AEC+GRAVS L
Sbjct: 300 DLTEQGTRGENILVVKAHPYALLDASLALQGPLYKASNGDGDEDFAVREAECKGRAVSLL 359

Query: 361 YNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISG 420
           YNLVSKDSI+VT+WS GQLQ+DAL DEIQPVW      RLR++S ++I G+AMICE   G
Sbjct: 360 YNLVSKDSILVTAWSAGQLQVDALVDEIQPVWISGNSSRLRMNSHNKIQGVAMICESNIG 419

Query: 421 ELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHD 480
           EL V   + PLDHTVWLGHPPPLLRLA VDLALP   E GS++T+  D L+ ERIY +HD
Sbjct: 420 ELTVATSNLPLDHTVWLGHPPPLLRLAMVDLALPTRREGGSLVTLFADSLLPERIYSLHD 479

Query: 481 GGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSW 540
           GGIDS VLH LPFTSQ  GKDE  ++PSVH VL+TCQ E S+ SPL GFV LSDSFGY+W
Sbjct: 480 GGIDSTVLHSLPFTSQATGKDEALKTPSVHTVLSTCQ-EESAVSPLLGFVPLSDSFGYAW 538

Query: 541 IVGVTSTQECVVIEMKTWNLLLPVQIDSEKK-SVDLGAKKERDTPDIISKELLSGPKVIL 599
           I+ V S+ EC+V EMKTW+LLLP+ + ++K  S     KKE+D   IISKELL+GPK+ +
Sbjct: 539 IIAVLSSGECIVAEMKTWDLLLPIHVGTDKTVSSSEIEKKEQDNSCIISKELLAGPKIRI 598

Query: 600 LPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKV 639
           +P A P  RS  A+S+EGRS L  Y  LF ENY+EYAHKV
Sbjct: 599 VPHALPTQRSTPANSVEGRSILLDYVKLFHENYIEYAHKV 638

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101133|ref|XP_002312155.1| predicted protein [Populus trichocarpa] gi|222851975|gb|EEE89522.1| predicted protein [Populus trichocarpa]

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/459 (75%), Positives = 398/459 (86%), Gaps = 2/459 (0%)

Query: 182 LSSDSVF-RLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFV 240
           +S D++  ++  L +DV++PEQEYYLQPVEPGR RNAASICPVDFSFGGDHLWDRFSVF+
Sbjct: 17  ISMDALLVKITPLFADVLKPEQEYYLQPVEPGRSRNAASICPVDFSFGGDHLWDRFSVFL 76

Query: 241 LFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFP 300
           LFSDGS+YILCP+VPFGSV+KWES+LEIY+DA+TFGL+S N +AV NS+ AISWLEATFP
Sbjct: 77  LFSDGSVYILCPIVPFGSVHKWESVLEIYSDAETFGLKSANPVAVNNSNRAISWLEATFP 136

Query: 301 EVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFL 360
           E+A E+  EG    LKAHP+A+FD+S+ LQGPLRK+ HGGEDE  AV  AECEGRA+SFL
Sbjct: 137 ELAHES-KEGGLSTLKAHPYAVFDASLCLQGPLRKVHHGGEDEDPAVSVAECEGRAISFL 195

Query: 361 YNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISG 420
           Y+L SKDSI+VT+WSGGQ+QIDALADEIQPVW V  PPRLRV+SQD I GLAM+CE ISG
Sbjct: 196 YDLASKDSILVTAWSGGQMQIDALADEIQPVWMVGSPPRLRVNSQDHIIGLAMLCESISG 255

Query: 421 ELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHD 480
           ELPVVKLDQP D+TVWLGHPPPLLRLA VDLALP+ TESGS I+M +DP+M ERIY VHD
Sbjct: 256 ELPVVKLDQPHDNTVWLGHPPPLLRLAIVDLALPRKTESGSYISMFVDPVMPERIYSVHD 315

Query: 481 GGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSW 540
           GGIDS+VLHFLPFTSQ+ GKDE  R+PSVHPVL+TCQ E S+PSPLCGF++LSDSFGYSW
Sbjct: 316 GGIDSIVLHFLPFTSQSGGKDEMVRTPSVHPVLSTCQVENSTPSPLCGFIALSDSFGYSW 375

Query: 541 IVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGAKKERDTPDIISKELLSGPKVILL 600
           I  +TS QECVV+EM+T NLLLPV +D EKKS  +     R+ PDIISKELL GPKV+L+
Sbjct: 376 IAVITSNQECVVLEMRTLNLLLPVHVDMEKKSETVEEWTNRNPPDIISKELLIGPKVVLV 435

Query: 601 PQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKV 639
           PQ SPNLRSVAADSIEGRSTLHQY NLF ENYVEYAHKV
Sbjct: 436 PQGSPNLRSVAADSIEGRSTLHQYLNLFHENYVEYAHKV 474

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326530820|dbj|BAK01208.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 308/645 (47%), Positives = 420/645 (65%), Gaps = 41/645 (6%)

Query: 10  PSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQ 69
           P T  + + +P    +WVP+  HP F+   A+                    SRLY WD 
Sbjct: 89  PRTSPKRTYSP---AQWVPVSSHPAFALRGALGG---------GGAAWDAAGSRLYVWDP 136

Query: 70  NAQCLHRISVRLGEPDP------TSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLI 123
           +A+  HR+SVR+ + +        ++ AA PS+++  +  L FE++ IS+N +GS+LLL 
Sbjct: 137 SARGAHRVSVRIRDAEAERDGEEVAVEAAVPSEMLMPEKDLGFEITHISLNTDGSSLLLA 196

Query: 124 GSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183
           GS  + VMY++ R  S D  TI+CRT  V SQI  ++++ I+ LQ SWHP+S +H G+L+
Sbjct: 197 GSHNINVMYVHER-VSEDGDTIMCRTAPVASQILPTNNDGIKVLQTSWHPFSSSHFGVLT 255

Query: 184 SDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS 243
           SD+VFRLF+L+ D+ QPEQE+YLQP+ PGR +NA+SICPV FS+G DHLWDRFSVF+LFS
Sbjct: 256 SDAVFRLFDLSFDLEQPEQEFYLQPILPGRCQNASSICPVAFSYGSDHLWDRFSVFILFS 315

Query: 244 DGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVA 303
           DGSI++LCPVVPFG  Y  + I EIY D  TFGL+S N   V NS LAI WLEATFPE+ 
Sbjct: 316 DGSIFVLCPVVPFGCDYSKKHIEEIYEDVNTFGLKSSNPNVVTNSHLAIVWLEATFPELL 375

Query: 304 QETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNL 363
           +++ D     + +A   A  D SV+LQGPL ++C   E+  L  + + CEG+AV F+Y+ 
Sbjct: 376 RQSADSSTLMS-RARAFAPVDDSVTLQGPLCRVCE--ENNELEGKSSSCEGKAVGFVYSS 432

Query: 364 VSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELP 423
           V KDS++VT+W  GQLQIDALADEIQP W++ +P RL VDS  RI  +AMIC+    +  
Sbjct: 433 VGKDSVLVTAWGSGQLQIDALADEIQPQWSIGVPTRLNVDSHGRIKSVAMICDSNPQDSS 492

Query: 424 VVKLDQPLD---------HTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQER 474
            ++  +P             VW+GH PPLLRL+ VDLALPK T +GS +++ +DPL+ ER
Sbjct: 493 ALRSHRPSSMGSNVKSNTEAVWMGHSPPLLRLSIVDLALPK-TSNGSSLSLFLDPLVPER 551

Query: 475 IYIVHDGGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSD 534
            Y  H GG+D V LHFLPF+      +  +  PSVHPVL T   +TSSP  L GFV+++D
Sbjct: 552 FYCAHGGGLDMVTLHFLPFSY----PEMASTPPSVHPVLTTGNSDTSSPF-LSGFVAIAD 606

Query: 535 SFGYSWIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGAKKERDTPDIISKELLSG 594
           ++G+  +VG+T T EC V+EMK W    P+Q+D   K +      E  T  +ISKELL+G
Sbjct: 607 AYGHVQLVGITYTGECFVVEMKGWKEPTPLQLDICSKDIK---DVESSTTGMISKELLAG 663

Query: 595 PKVILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKV 639
           P   +LP +S +LRS+  DSIEG+STLH Y  +F E+YVEY HKV
Sbjct: 664 PDPPILP-SSTSLRSLTPDSIEGKSTLHHYIKVFHEHYVEYGHKV 707

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	691
TAIR|locus:2166424	810	MOS7 "MODIFIER OF SNC1,7" [Ara	0.927	0.791	0.630	1.5e-218
DICTYBASE|DDB_G0279039	961	DDB_G0279039 [Dictyostelium di	0.358	0.258	0.264	1.8e-11
FB|FBgn0026207	702	mbo "members only" [Drosophila	0.127	0.125	0.302	2.9e-07
MGI|MGI:104900	753	Nup88 "nucleoporin 88" [Mus mu	0.195	0.179	0.258	4e-07
RGD|620182	742	Nup88 "nucleoporin 88" [Rattus	0.195	0.181	0.258	9.8e-07
UNIPROTKB|Q99567	741	NUP88 "Nuclear pore complex pr	0.195	0.182	0.271	1.1e-06
UNIPROTKB|Q3SZ56	742	NUP88 "Nucleoporin 88kDa" [Bos	0.195	0.181	0.258	1.4e-06
ZFIN|ZDB-GENE-050522-297	720	nup88 "nucleoporin 88" [Danio	0.175	0.168	0.286	2.8e-06
UNIPROTKB|F1NIC8	722	NUP88 "Uncharacterized protein	0.232	0.222	0.245	6.5e-05

TAIR|locus:2166424 MOS7 "MODIFIER OF SNC1,7" [Arabidopsis thaliana (taxid:3702)]

 Score = 2111 (748.2 bits), Expect = 1.5e-218, P = 1.5e-218
 Identities = 409/649 (63%), Positives = 498/649 (76%)

Query:     1 MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDG 60
             M+FNF+ +E + DSR S TPKE V WVPLQ HPVF++  + ++        P+N +AWDG
Sbjct:     1 MKFNFNETEDAPDSRRSPTPKEPVRWVPLQSHPVFASLPSSQDEPAVSQLFPRNFMAWDG 60

Query:    61 ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSAL 120
              SR+YYWD     LHR+S+RLGEP+P+S+LAA PSKVM+ D+++ F VS+ISIN++GSA+
Sbjct:    61 DSRVYYWDSRRYLLHRLSLRLGEPEPSSVLAAVPSKVMQPDLQVTFSVSKISINKSGSAV 120

Query:   121 LLIGSDGLCVMYLYGR-TCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHL 179
             LL GSDG+CVMYL+GR +   DN  +ICR VS+GS+IY SS + I  LQ SWHP SDTHL
Sbjct:   121 LLAGSDGICVMYLFGRASVIEDN--VICRVVSIGSEIYTSSDSAITLLQASWHPDSDTHL 178

Query:   180 GILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVF 239
             GILSSD+VFRLF+L+SD   PEQEYYLQP EPGR R A+SI P DFSFGGDHLWDRF+VF
Sbjct:   179 GILSSDAVFRLFDLSSDTELPEQEYYLQPGEPGRSRTASSIYPADFSFGGDHLWDRFTVF 238

Query:   240 VLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATF 299
             +LF+DGSIYILCPVVPFGSVYKWES++EIYNDA  +G++S NSLAV NSSLAI WLEATF
Sbjct:   239 ILFTDGSIYILCPVVPFGSVYKWESVMEIYNDANMYGVKSSNSLAVSNSSLAIEWLEATF 298

Query:   300 PEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSF 359
             P++ ++     +   +KA P+AL D+S++LQGPL K   G  DE  AVR AEC+GRAVS 
Sbjct:   299 PDLTEQGTRGENILVVKAQPYALLDASLALQGPLYKASSGDGDEDFAVREAECKGRAVSL 358

Query:   360 LYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPIS 419
             LYNLVSKDSI+VT+WS GQLQ+DAL DEIQPVW      RLR++S ++I G+AMICE   
Sbjct:   359 LYNLVSKDSILVTAWSAGQLQVDALVDEIQPVWISGNSSRLRMNSHNKIQGVAMICESNI 418

Query:   420 GELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVH 479
              ELPV   + PLDHTVWLGHPPPLLRLA VDLALPK  E GS++T+  D L+ ERIY +H
Sbjct:   419 SELPVATSNLPLDHTVWLGHPPPLLRLAMVDLALPKMREGGSLVTLFADSLLPERIYSLH 478

Query:   480 DGGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYS 539
             DGGIDS VLH LPFTSQ  GKDE  ++PSVH VL+TCQ E S+ SPL GFV LSDSFGYS
Sbjct:   479 DGGIDSTVLHSLPFTSQASGKDEALKTPSVHTVLSTCQ-EESAVSPLLGFVPLSDSFGYS 537

Query:   540 WIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGA--KKERDTPDIISKELLSGPKV 597
             WIV V S+ EC+V EMKTW+LLLP+ + ++K +V   A  KKE++   IISKELL+GPK+
Sbjct:   538 WIVAVLSSGECIVAEMKTWDLLLPIHVSTDK-TVSSSAIEKKEQENSCIISKELLAGPKI 596

Query:   598 ILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVRKLYLNH 646
              + P A PN RS  A+S+EGRS L  Y  LF ENY+EYAHKV    L H
Sbjct:   597 RIAPHALPNQRSTPANSVEGRSILLDYVKLFHENYIEYAHKVH-FELQH 644

GO:0005634 "nucleus" evidence=ISM

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005643 "nuclear pore" evidence=IDA

GO:0006611 "protein export from nucleus" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=IMP

GO:0045087 "innate immune response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

DICTYBASE|DDB_G0279039 DDB_G0279039 [Dictyostelium discoideum (taxid:44689)]

 Score = 194 (73.4 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 78/295 (26%), Positives = 135/295 (45%)

Query:    28 PL-QKHPVFSA-PDAVRNGGGKFNGAPKNLVAWDG-ASRLYYWDQNAQC-LHRISVRLGE 83
             PL  K P  S  P +  +   + +   KN ++ +  +S +YY+    +C L+ I V   E
Sbjct:    14 PLFSKTPQSSQKPSSFTSENNELSFTAKNFLSVNNQSSEIYYYSP-IECKLYVIKV---E 69

Query:    84 PDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSS--- 140
                 + + A   + ++  +K+NFEV +I +N +   L + G     ++ L  +T +S   
Sbjct:    70 STLDNTICAIRFQELK--LKINFEVYKIELNEDSRYLCISGHVNCIIVDLNPQTVNSYFT 127

Query:   141 --------DNKT-----IICRTVSVGSQIYFSS-SNVIRTLQVSWHPYSDTHLGILSSDS 186
                     +NKT     +  R+ ++    Y S  SN+I+  QV WHP S+ HL IL S++
Sbjct:   128 SQEIFSDQENKTFGYDSLTVRSFTLDKTFYQSQISNIIK--QVEWHPLSNIHLVILYSNN 185

Query:   187 VFRLFNLASDVMQPEQEYYLQPVEP---------GRYRNAASICP--VDFSFGGD-HLWD 234
               +++N+ S   + EQ + L+ +              RN        + F FG + + W 
Sbjct:   186 TLKIYNIQSGNEEIEQTFNLESIHTFESLKNLKNNDIRNQTKNTKKFISFCFGSNINFWT 245

Query:   235 RFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSS 289
             RF++F+L   G I+ LCPV+P   + +       Y D Q   L   N   + N+S
Sbjct:   246 RFTIFLLSDSGEIFNLCPVIPNNCLVE----TSFYRDFQNHILYEKNQ--IENNS 294

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0026207 mbo "members only" [Drosophila melanogaster (taxid:7227)]

 Score = 112 (44.5 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
 Identities = 29/96 (30%), Positives = 52/96 (54%)

Query:   104 LNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSS----DNKTII-CRTVSVGSQIYF 158
             ++ EV R+  +  GS + L G  G+ +M L  R        D K +I CRT  + +Q++ 
Sbjct:    75 VSLEVDRVLASNEGSLVALSGPRGVVIMELPRRWGPDGYYKDGKPVITCRTFGLDTQLFL 134

Query:   159 SSSNVIRTLQVSWHPYS--DTHLGILSSDSVFRLFN 192
              + + +   QV WHP+S  D+ L +L +++  R++N
Sbjct:   135 KNPH-LEVRQVRWHPHSVSDSTLLVLLNNNTIRVYN 169

GO:0005643 "nuclear pore" evidence=ISS;IDA;NAS

GO:0006955 "immune response" evidence=NAS

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0007424 "open tracheal system development" evidence=TAS

GO:0035147 "branch fusion, open tracheal system" evidence=TAS

GO:0046826 "negative regulation of protein export from nucleus" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

MGI|MGI:104900 Nup88 "nucleoporin 88" [Mus musculus (taxid:10090)]

 Score = 120 (47.3 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
 Identities = 39/151 (25%), Positives = 75/151 (49%)

Query:    53 KNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSI---LAAFPSKVMRADVKLNFEVS 109
             +NLV   G   L+ WD        + VRL  P    +   L+ +  +++  +  L FE+ 
Sbjct:    60 RNLVFGLGGE-LFLWDAEGSAF--LVVRLRGPSGGGVEPPLSQY-QRLLCINPPL-FEIH 114

Query:   110 RISINRNGSALLLIGSDGLCVMYL---YGRTCSSDN--KTIICRTVSVGSQIYFSSSNVI 164
             ++ ++     + LIGS GL  + L   +G+    +    T+ C T+ +  + +F+SS  +
Sbjct:   115 QVLLSPTQHHVALIGSKGLMALELPQRWGKDSEFEGGKATVNCSTIPIAER-FFTSSTSL 173

Query:   165 RTLQVSWHPYS--DTHLGILSSDSVFRLFNL 193
                  +W+P    D H+ +L+SD+V R+++L
Sbjct:   174 TLKHAAWYPSEMLDPHIVLLTSDNVIRIYSL 204

GO:0005634 "nucleus" evidence=IEA

GO:0005643 "nuclear pore" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0015288 "porin activity" evidence=IEA

GO:0046930 "pore complex" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|620182 Nup88 "nucleoporin 88" [Rattus norvegicus (taxid:10116)]

 Score = 121 (47.7 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
 Identities = 39/151 (25%), Positives = 76/151 (50%)

Query:    53 KNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSI---LAAFPSKVMRADVKLNFEVS 109
             +NLV   G   L+ WD        + VRL  P   S+   L+ +  +++  +  L FE+ 
Sbjct:    60 RNLVFGLGGE-LFLWDAEGSAF--LVVRLRGPSGGSVEPPLSQY-QRLLCINPPL-FEIH 114

Query:   110 RISINRNGSALLLIGSDGLCVMYL---YGRTCSSDN--KTIICRTVSVGSQIYFSSSNVI 164
             ++ ++     + LIG+ GL  + L   +G+    +    T+ C T+ +  + +F+SS  +
Sbjct:   115 QVLLSPTQHHVALIGTKGLMALELPQRWGKDSEFEGGKATVNCSTIPIAER-FFTSSTSL 173

Query:   165 RTLQVSWHPYS--DTHLGILSSDSVFRLFNL 193
                  +W+P    D H+ +L+SD+V R+++L
Sbjct:   174 TLKHAAWYPSEMLDPHIVLLTSDNVIRIYSL 204

GO:0005634 "nucleus" evidence=ISO

GO:0005643 "nuclear pore" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q99567 NUP88 "Nuclear pore complex protein Nup88" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 41/151 (27%), Positives = 72/151 (47%)

Query:    53 KNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLN---FEVS 109
             +N+V   G   L+ WD        + VRL  P       A  S+  R  + +N   FE+ 
Sbjct:    58 RNVVFGLGGE-LFLWDGEDSSF--LVVRLRGPSGGGEEPAL-SQYQRL-LCINPPLFEIY 112

Query:   110 RISINRNGSALLLIGSDGLCVMYL---YGRTCSSDN--KTIICRTVSVGSQIYFSSSNVI 164
             ++ ++     + LIG  GL V+ L   +G+    +    T+ C T  V  + +F+SS  +
Sbjct:   113 QVLLSPTQHHVALIGIKGLMVLELPKRWGKNSEFEGGKSTVNCSTTPVAER-FFTSSTSL 171

Query:   165 RTLQVSWHPYS--DTHLGILSSDSVFRLFNL 193
                  +W+P    D H+ +L+SD+V R+++L
Sbjct:   172 TLKHAAWYPSEILDPHVVLLTSDNVIRIYSL 202

GO:0015031 "protein transport" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0005215 "transporter activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0008645 "hexose transport" evidence=TAS

GO:0010827 "regulation of glucose transport" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q3SZ56 NUP88 "Nucleoporin 88kDa" [Bos taurus (taxid:9913)]

 Score = 108 (43.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 39/151 (25%), Positives = 72/151 (47%)

Query:    53 KNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLN---FEVS 109
             +NLV   G   L+ WD        + VRL  P       +  S+  R  + +N   FE+ 
Sbjct:    59 RNLVLGLGGE-LFLWDPEESSF--LVVRLRGPSGAGEEPSL-SQYQRL-LCINPPLFEIY 113

Query:   110 RISINRNGSALLLIGSDGLCVMYL---YGRTCSSDN--KTIICRTVSVGSQIYFSSSNVI 164
             ++ ++     + LIG  GL ++ L   +G+    +    T+ C T  V  + +F+SS  +
Sbjct:   114 QVLLSPTQHHVALIGIKGLMILELPKRWGKNSEFEGGKSTVNCSTTPVAER-FFTSSTSL 172

Query:   165 RTLQVSWHPYS--DTHLGILSSDSVFRLFNL 193
                  +W+P    + H+ +L+SD+V R+++L
Sbjct:   173 TLKHAAWYPSEMLEPHIVLLTSDNVIRIYSL 203

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-050522-297 nup88 "nucleoporin 88" [Danio rerio (taxid:7955)]

 Score = 104 (41.7 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
 Identities = 41/143 (28%), Positives = 70/143 (48%)

Query:    64 LYYWDQNAQCLHRISVRL----GEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSA 119
             L+ WD      +  ++R     GEPD +         ++  +  L FEV  + ++ +   
Sbjct:    49 LFIWDSVESVFYTTNLRQLNSDGEPDTSRY-----QTLLCINPPL-FEVCLVLVSPSQYH 102

Query:   120 LLLIGSDGLCVMYL---YGRTCSSDNKTII--CRTVSVGSQIYFSSSNVIRTL-QVSWHP 173
             + LIG  G  V+ L   +G+    +   I   C+T+ V  + + SS++V  TL Q  W+P
Sbjct:   103 VALIGQRGATVLELPQRWGKKSEFEGGRIQINCKTIPVAERFFTSSASV--TLRQAVWYP 160

Query:   174 YSDT---HLGILSSDSVFRLFNL 193
              S+T   HL +L+SD+  R +NL
Sbjct:   161 -SETEEPHLVLLTSDNTIRFYNL 182

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NIC8 NUP88 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 94 (38.1 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
 Identities = 46/187 (24%), Positives = 87/187 (46%)

Query:    25 EWVPLQKH----PVFSAPDAVRNGGGKFNGAPKN------LVAWDGASRLYYWDQNAQCL 74
             EW P ++     P  +A   +R+ G   + AP++      L+  DG   L  WD     L
Sbjct:     5 EWGPAEQWRAALPQHAAFGRLRDSGPAPSAAPRSPLIRSLLLGLDGD--LLLWDGERGAL 62

Query:    75 HRISVR-LGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYL 133
               I +R L   +P   L  + + ++  +  L F ++R S       + LIG+ GL  + L
Sbjct:    63 LDIDLRRLSGAEPE--LGRYQT-LLCINPPL-FCITRCSAPLF-CHVALIGTKGLSAVEL 117

Query:   134 ---YGRTCSSDN--KTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS--DTHLGILSSDS 186
                +G+    +    T+ C T+ +  + +F+SS  +     +W+P    + H+ +L+SD+
Sbjct:   118 PKRWGKNSEFEGGKATVNCSTIPIAER-FFTSSTSLTLKHAAWYPCETLEPHVVLLTSDN 176

Query:   187 VFRLFNL 193
               R+++L
Sbjct:   177 TIRIYSL 183

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	691
pfam10168	717	pfam10168, Nup88, Nuclear pore component	1e-10
pfam10168	717	pfam10168, Nup88, Nuclear pore component	9e-04

>gnl|CDD|118696 pfam10168, Nup88, Nuclear pore component

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 64/261 (24%), Positives = 106/261 (40%), Gaps = 52/261 (19%)

Query: 29  LQKHPVFSAPDAVRNG-----GGKFNGAPKNLV-AWDGASRLYYWDQNAQCLHRISVR-- 80
           L KH +F+    +R G             +NL+   DG   L+ WD    C   +++R  
Sbjct: 8   LSKHALFAK---LREGLPVVQRTTSKRIAQNLLDCLDGL--LFAWDAEESCFLVVNLRSP 62

Query: 81  LG---EPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGR- 136
           LG   EP  +       S          FEV R+ ++   S + L G  G+ ++ L  R 
Sbjct: 63  LGAGEEPAKSQYQTLLCS------NPPLFEVDRVLVSPEQSHVALSGPRGVMILELPRRW 116

Query: 137 ----TCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS--DTHLGILSSDSVFRL 190
                     K I CRT  +  ++ F+SS  +   Q  W+P    + HL +L+SD+  R+
Sbjct: 117 GKDSEFEGGKKQINCRTFPLAERL-FTSSTSLELRQARWYPSEVSEPHLLLLTSDNTIRV 175

Query: 191 FNLASDVMQPEQ-----EYYLQPVEPGRYRN-AASI--CPVDFSFG-----GDHLWDR-- 235
           +NL S    P Q     +   + V      +  AS+    V F FG        L+ +  
Sbjct: 176 YNL-SKPRHPWQVGPLSQADDESVLRNGANSSLASLGETAVAFDFGPLAASPKTLFGQKP 234

Query: 236 ------FSVFVLFSDGSIYIL 250
                 + +++L+ +G  Y+L
Sbjct: 235 KQERIEYPLYILYENGETYLL 255

Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells. Length = 717

>gnl|CDD|118696 pfam10168, Nup88, Nuclear pore component

 Score = 42.2 bits (99), Expect = 9e-04
 Identities = 54/240 (22%), Positives = 88/240 (36%), Gaps = 32/240 (13%)

Query: 440 PPPLLRLATVDLAL----PKNTESGS------IITMSIDPLMQERIYIVHDGGIDSVVLH 489
           PP L     V+L L        E          I +  DP+ + R +  H+ G+ SV L 
Sbjct: 336 PPSLYVFECVELELGLKLAAGEEEEIKSDFNCPIYLKRDPICELRYHCTHNAGVHSVGLS 395

Query: 490 FLP-----FTSQTRGKDE-----TNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYS 539
           ++        S    KD      + ++  V  +L T       P+P+ GF  L D  G  
Sbjct: 396 WIAELQKFLESDEEDKDSLQELASEQACIVEHILCTKPLSCELPNPVRGFWILQDLLGAG 455

Query: 540 WIVGVTSTQECVVIEM-KTWNLLLP----VQIDSEKKSVDLGAKKERDTPDIIS-KELL- 592
            ++ +T T EC+ + +      L P      +DSE     L    E         + +L 
Sbjct: 456 -MICITGTYECISLPLLIDAQPLSPPLLCKHVDSEVDQQPLRGLAESGPSFEDHIRSILQ 514

Query: 593 -SGPKVILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVRKLYLNHIKLVL 651
            S    ILL  A    +  +    E    L +   +F+E Y+      R+ +   +KL+ 
Sbjct: 515 RSVNNPILLRSAD---KDSSPPPEECLQLLSRATQVFREQYLLKHDLAREEFQRRVKLLQ 571

Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells. Length = 717

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	691
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	100.0
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	95.96
PTZ00421	493	coronin; Provisional	95.93
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	95.06
KOG1274	933	consensus WD40 repeat protein [General function pr	94.95
KOG2096	420	consensus WD40 repeat protein [General function pr	94.77
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	94.68
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	93.8
KOG2048	691	consensus WD40 repeat protein [General function pr	93.73
PTZ00420	568	coronin; Provisional	92.71
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.91
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	91.36
KOG0302	440	consensus Ribosome Assembly protein [General funct	91.05
KOG0643	327	consensus Translation initiation factor 3, subunit	90.82
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	90.74
KOG0772	641	consensus Uncharacterized conserved protein, conta	90.55
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	90.42
PTZ00421	493	coronin; Provisional	90.28
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	89.4
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	88.15
PLN00181	793	protein SPA1-RELATED; Provisional	88.1
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	88.06
KOG0266	456	consensus WD40 repeat-containing protein [General	88.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	87.79
KOG0289	506	consensus mRNA splicing factor [General function p	87.75
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	87.35
PRK11028	330	6-phosphogluconolactonase; Provisional	86.86
KOG0973	942	consensus Histone transcription regulator HIRA, WD	86.51
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	86.46
KOG0270	463	consensus WD40 repeat-containing protein [Function	86.07
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	85.83
KOG0308	735	consensus Conserved WD40 repeat-containing protein	85.7
KOG0315	311	consensus G-protein beta subunit-like protein (con	85.63
KOG0289	506	consensus mRNA splicing factor [General function p	85.46
KOG2055	514	consensus WD40 repeat protein [General function pr	85.37
PLN00181	793	protein SPA1-RELATED; Provisional	84.99
KOG0315	311	consensus G-protein beta subunit-like protein (con	84.51
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	84.03
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	82.56
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	80.45

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-90  Score=745.79  Aligned_cols=587  Identities=25%  Similarity=0.234  Sum_probs=487.4

Q ss_pred             CccccCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCcCCCCCCCCCCCCCceEEEEeCCCeEEEEECCcceEEEEEee
Q 005546            1 MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVR   80 (691)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~Wl~l~~hpiF~~~~~~~~~~~~~~~~~rnlla~~g~~~Lfvw~~n~~~l~~~~lR   80 (691)
                      |.|||++.++.+++|++||||+.++|++..+||.|........-......-+||+++|+| +++|+|++.++||++++||
T Consensus         1 m~~~~~~~~d~~~~~~~p~~~~~lr~Vl~~~~ptea~~p~s~~lP~V~~l~trN~~~~~g-D~lf~Wd~~ds~Llv~~lR   79 (741)
T KOG4460|consen    1 MAAAEGPVGDGELWQWLPNHFLRLREVLKNQSPTEAEKPASSSLPSVPPLLTRNVVFGLG-DELFLWDGEDSSLLVVRLR   79 (741)
T ss_pred             CCcccCCCCcchhhhcCCCccccHhHHhhhcCchhhcccccCCCCCCccccccchhcccC-CEEEEEecCcceEEEEEec
Confidence            999999999999999999999999999999999998774311111223335999999997 6999999999999999999


Q ss_pred             cCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCC---C-C-CCceEEEEEEecce
Q 005546           81 LGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCS---S-D-NKTIICRTVSVGSQ  155 (691)
Q Consensus        81 ~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~---~-d-~~~i~crt~~v~~~  155 (691)
                      .. +++.++.+..+|++|.++.++.|+|.++.+|++|+++||+|.++|+||+||+|||.   + | ++.+.||++.||.+
T Consensus        80 ~~-~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~  158 (741)
T KOG4460|consen   80 GP-SGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER  158 (741)
T ss_pred             cC-CCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce
Confidence            73 34444566788999999999999999999999999999999999999999999964   2 2 45789999999987


Q ss_pred             eeeecCCccceEEEEEecCC--CCEEEEEecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCC
Q 005546          156 IYFSSSNVIRTLQVSWHPYS--DTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLW  233 (691)
Q Consensus       156 ~~~~s~~~~~I~qv~WHP~s--ds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W  233 (691)
                       +|++++.+.++||+|||.|  |+||++|++||+||+||++.+.+     .++++..+||+..+....    +||     
T Consensus       159 -~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te-----lylqpgepgRS~tn~Si~----sFG-----  223 (741)
T KOG4460|consen  159 -FFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE-----LYLQPGEPGRSPTNVSIL----SFG-----  223 (741)
T ss_pred             -eeccCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcch-----hhccCCCcCCCCccceee----ccC-----
Confidence             6888899999999999999  99999999999999999986443     477777788887654322    566     


Q ss_pred             CceEEEEEecCCcEEEEcccCCCCCCCChhHHHHHHhhhccccccccchhhhhchHHHHHHHHhhccccccccCCCCCCC
Q 005546          234 DRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPP  313 (691)
Q Consensus       234 ~~~TLyiL~~~GDIYalcP~lP~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~~a~~Ql~Wl~~l~~q~~~~~~~~~~~~  313 (691)
                                +|.||.+||..|++..+.++.+-   |++...+. +.+.-+..|+....+|++..+.-+..++. +.+..
T Consensus       224 ----------e~~~~~l~~~~a~~~V~~~Esv~---Nd~~~l~~-S~ktL~~~nSs~k~E~iE~p~~~L~EnG~-~~NIy  288 (741)
T KOG4460|consen  224 ----------EEESLVLNKGRAYTAVLGEEAVA---NDFGPLAA-SPKTLFGQNSSGKDEVVEYPLYILYENGE-TFNIY  288 (741)
T ss_pred             ----------CcceeeeccCcccccccCchhhc---cCcccccc-CccceeeecccccceeEecceeeeeccCc-ceeEE
Confidence                      59999999999999999888775   55444443 44444667777889999999998888765 55777


Q ss_pred             ccccccCccCCCcceeeCCeeecCCCCCCchhhhhccccccccceeEEeccCCCeEEEEEecCCeEEEEeecCCCccccc
Q 005546          314 ALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWT  393 (691)
Q Consensus       314 ~v~~~p~~~~~~~p~LQGPf~i~~p~~ed~y~~~~~~~c~~~A~~il~~~~~~~~iL~iA~s~G~V~i~l~~~ev~~~W~  393 (691)
                      .+.++++   +...+||||++|. |.++|+|+.   ++|     .+|++ ++.++||+|||++|++|||++.++.++.|.
T Consensus       289 i~~~~~~---~~~~~LQGPl~~~-p~aeDnyg~---~~C-----aL~~l-pS~p~ilViA~S~G~L~h~~L~e~e~~~~h  355 (741)
T KOG4460|consen  289 ISLLHSP---GNIGKLQGPLPMH-PAAEDNYGY---DAC-----ALLCL-PSVPNILVIATSSGMLYHCVLLEGEEEDDH  355 (741)
T ss_pred             EEEccCc---chhhhhcCCccCC-cccccccch---hhh-----eeEee-cCCCCeEEEEecCCceeeeeeecccccccc
Confidence            7777776   4468999999999 899999983   555     56666 679999999999999999999999999999


Q ss_pred             cCCCCCcccCccccccccceeeccccCCCCccccCCCCCccccCCCCCCceeeeEeeccCCCCCCCCceeEEeeCCCCCc
Q 005546          394 VNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQE  473 (691)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~a~i~Es~~~~~~~~~~~~p~~~t~~~~~~p~Ll~le~vdl~l~~~~~~~~~~~l~~Dp~~~~  473 (691)
                      +++..+.++.++..+.+++|+||+.-++.++.+.++|.                        ....+|||.|+||+.++-
T Consensus       356 S~N~s~ds~~~~~p~~yV~~~~E~~i~l~l~~~~~~p~------------------------d~~~~cP~~L~Rd~~~~L  411 (741)
T KOG4460|consen  356 SSNKSWDSRIDLIPSLYVFECVELELALKLASGEDDPF------------------------DSDFSCPVKLHRDPKCPL  411 (741)
T ss_pred             ccccchhhhhhcchhhHHHHHHhhhhhhhhccCCCCCc------------------------cccCCCCchhhhcccccc
Confidence            98887777667888899999999944444545444443                        335678999999999999


Q ss_pred             eEEEEecCceeEEEeeccc----cccc-cCCCCc--cC---CCCceEEEEecCCCCCCCCCceeeEEEccccccceeEEE
Q 005546          474 RIYIVHDGGIDSVVLHFLP----FTSQ-TRGKDE--TN---RSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVG  543 (691)
Q Consensus       474 ~~~vtH~~GVh~VsL~Wv~----~le~-e~g~d~--~~---~~~~ve~ll~t~~~~~~~~~pl~G~~vi~D~lg~~~Ll~  543 (691)
                      ||||+|++|||+|.++|++    +|+. |.++|-  .+   .+|++++++||+...+...+||.||++++|++|| |+||
T Consensus       412 ry~~~heaGvh~v~~S~i~El~~~L~s~e~D~d~L~~l~~~S~~~~e~iLcTk~~~c~~V~pi~Gf~~L~d~~G~-~IV~  490 (741)
T KOG4460|consen  412 RYHCTHEAGVHSVGLSWIHELHKFLGSDEEDKDSLQELSTESKCFVEHILCTKPLPCRQVAPIRGFWILPDILGP-TIVC  490 (741)
T ss_pred             cchhhhccceEeehhhhHHHHHHHhcCCCcchHHHHhhhhhhhhhhHHHhcCCCCcccccccccceeeccccCCc-eEEE
Confidence            9999999999999999999    4543 555553  11   2566999999999888888999999999999999 5999


Q ss_pred             EecCCcEEEEEecccccccccccccccc--ccccccccCCCChHHHHHhHhcCCcccccCCCCCCCCcccCCChhhhHHH
Q 005546          544 VTSTQECVVIEMKTWNLLLPVQIDSEKK--SVDLGAKKERDTPDIISKELLSGPKVILLPQASPNLRSVAADSIEGRSTL  621 (691)
Q Consensus       544 lts~~~~v~~~l~~~~~l~P~~~~~~~~--~~~~~~~~~~~~~~~i~k~ll~gp~~~~~p~~~~~~~~~~~~s~E~~~~L  621 (691)
                      +.++|||++     |++++|.+...++.  +..+.|.+|.+..+.+.|++++|++--.-|.+.++.++.++ +.||+++|
T Consensus       491 vLsSGecI~-----w~Ll~~~h~~~~p~~~~~~d~Ev~eQE~~~~f~k~i~s~lqrsva~paL~~~~SsP~-~~E~~~lL  564 (741)
T KOG4460|consen  491 ILSSGECII-----WPLLSTVHPASPPLLCTREDVEVAEQETPDSFEKHIRSILQRSVANPALLKASSAPP-PEECLQLL  564 (741)
T ss_pred             EecCCcEEE-----EeeeccccccCCcccCchhHhHHHhhhcCCcHHHHHHHhhhhhcCChhccccccCCC-cHHHHHHH
Confidence            999999997     55567776665544  23567777888889999999999998888888788888776 99999999


Q ss_pred             HHHHHHHHHhhHhHHHHHHHHHHhhhhhhhhcccccccccccccc
Q 005546          622 HQYFNLFQENYVEYAHKVRKLYLNHIKLVLFTSYSMSIEHQDLCG  666 (691)
Q Consensus       622 ~~~~~~l~~~y~~~~~kv~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (691)
                      .||+++|||+|++|||+||+||++||+++-..   +++||||+.-
T Consensus       565 ~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~---k~~QlQ~l~~  606 (741)
T KOG4460|consen  565 SRATQVFREQYILKQDLVKEEIQRHVKLLCDQ---KKKQLQDLSY  606 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            99999999999999999999999999865443   7899999853

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=100.00  E-value=6.1e-87  Score=771.41  Aligned_cols=523  Identities=29%  Similarity=0.411  Sum_probs=401.7

Q ss_pred             CCcc-cCCCCcccccCcCCCCC-C-CCCCCCCceEEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEec
Q 005546           24 VEWV-PLQKHPVFSAPDAVRNG-G-GKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRA  100 (691)
Q Consensus        24 ~~Wl-~l~~hpiF~~~~~~~~~-~-~~~~~~~rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~  100 (691)
                      -+|+ .|++|+||++.+..... . .......|||++++| ++||+||++++|++++|||....++........|+++++
T Consensus         2 ~~~~~~L~~h~lF~~l~~~l~~~~~~~~~~~~rNLl~~~d-~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~   80 (717)
T PF10168_consen    2 ETWRLWLPNHPLFKRLREGLSSSSKGSSERHTRNLLACRD-GDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPS   80 (717)
T ss_pred             cchhhhCCCChhHHHhhccCCCCCcccccccceeeEEEeC-CEEEEEECCCCEEEEEeeccccccccCccccCcceeecC
Confidence            3798 99999999999653322 1 223345799999996 999999999999999999999754332111234566776


Q ss_pred             CCCCceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCC---CC--CCceEEEEEEecceeeeecCCccceEEEEEecCC
Q 005546          101 DVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCS---SD--NKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS  175 (691)
Q Consensus       101 ~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~---~d--~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s  175 (691)
                      ++ +.|+|++|++||+|++|||+|+++|+||+||+||++   ++  +..+.||+++||+. ||.+++++.|+||+|||+|
T Consensus        81 ~~-~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~-~~~~~~~~~i~qv~WhP~s  158 (717)
T PF10168_consen   81 NP-PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDER-FFTSNSSLEIKQVRWHPWS  158 (717)
T ss_pred             CC-CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechh-hccCCCCceEEEEEEcCCC
Confidence            55 579999999999999999999999999999999964   33  35789999999987 6788999999999999998


Q ss_pred             --CCEEEEEecCCeEEEEeccCCCCCCcEEEEcccC-------CCCCCCCC-CCCceEEEEecCC-------------CC
Q 005546          176 --DTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPV-------EPGRYRNA-ASICPVDFSFGGD-------------HL  232 (691)
Q Consensus       176 --ds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~-------~~g~s~~~-s~~~avsf~FG~~-------------~~  232 (691)
                        |+|||||||||+||+||++ +...|.|++.+.+.       ..|+++.+ .|++||||||||.             ..
T Consensus       159 ~~~~~l~vLtsdn~lR~y~~~-~~~~p~~v~~~~~~~~~~~~~~~~~~~~~slge~AV~FDfgP~~~~~~~~~~~~~~~~  237 (717)
T PF10168_consen  159 ESDSHLVVLTSDNTLRLYDIS-DPQHPWQVLSLSPGEKSSSLSSRGRSFLASLGETAVDFDFGPLDTSPKTLTGQKSKQE  237 (717)
T ss_pred             CCCCeEEEEecCCEEEEEecC-CCCCCeEEEEcccCcccccccCCCccccccchheeeecccccccccccccccccCCCC
Confidence              8999999999999999997 78999999998742       12333433 3899999999983             23


Q ss_pred             CCceEEEEEecCCcEEEEcccCCCCCCCChhHHHHHHhhhccccccccchhhhhchHHHHHHHHhhccccccccCCCCCC
Q 005546          233 WDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDP  312 (691)
Q Consensus       233 W~~~TLyiL~~~GDIYalcP~lP~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~~a~~Ql~Wl~~l~~q~~~~~~~~~~~  312 (691)
                      |-.|+||||++|||||.+|-.+-                                                .        
T Consensus       238 ~~~~p~~vL~~ng~v~~~~~~l~------------------------------------------------~--------  261 (717)
T PF10168_consen  238 KIEWPIFVLRENGDVYLLYTSLQ------------------------------------------------D--------  261 (717)
T ss_pred             ceeccEEEEecCCCEEEEEEecc------------------------------------------------c--------
Confidence            45789999999999999985530                                                0        


Q ss_pred             CccccccCccCCCcceeeCCeeecCCCCCCchhhhhccccccccceeEEeccCCCeEEEEEecCCeEEEEeecCCCcccc
Q 005546          313 PALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVW  392 (691)
Q Consensus       313 ~~v~~~p~~~~~~~p~LQGPf~i~~p~~ed~y~~~~~~~c~~~A~~il~~~~~~~~iL~iA~s~G~V~i~l~~~ev~~~W  392 (691)
                               ..+..+++||||+|+ |+++||||.        +||+|+|++ +.|+||+||+++|++|||+.+++.. .|
T Consensus       262 ---------~~~~~~~~~gpl~~~-p~~~dnyg~--------d~c~i~~l~-~~p~~~via~~~G~l~h~i~l~~~~-~~  321 (717)
T PF10168_consen  262 ---------ENSNLPKLQGPLPMQ-PPADDNYGL--------DACSILCLP-SLPPVLVIATSNGKLYHCILLEAEE-DE  321 (717)
T ss_pred             ---------CccccceecCceecC-CCCcccCCC--------ceeeEEEec-CCCCEEEEEecCCeEEEEEEecccc-cc
Confidence                     012457999999999 899999993        677999994 4789999999999999998765432 22


Q ss_pred             ccCCCCCcccCccccccccceeeccccCCCCccccCCCCCccccCCCCCCceeeeEeeccCCCCC----------CCCce
Q 005546          393 TVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNT----------ESGSI  462 (691)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~a~i~Es~~~~~~~~~~~~p~~~t~~~~~~p~Ll~le~vdl~l~~~~----------~~~~~  462 (691)
                      .....     +                            .+..+...+|.|++||||||+|+...          .++|+
T Consensus       322 ~~~~~-----~----------------------------~~~~~~~~~~~L~V~E~VeLel~l~~~~~~~~~~~~~~~cp  368 (717)
T PF10168_consen  322 DDSFN-----E----------------------------SDDQSLEEPPSLYVLETVELELGLSLASEDEESLELSYSCP  368 (717)
T ss_pred             ccccc-----c----------------------------cccccccCCcceEEEEEEeeccccccCCCCCccccCCCCcc
Confidence            10000     0                            00012336789999999999987754          25799


Q ss_pred             eEEeeCCCCCceEEEEecCceeEEEeeccccc----cc-cCCCCc-----cCCCCceEEEEecCCCCCCCCCceeeEEEc
Q 005546          463 ITMSIDPLMQERIYIVHDGGIDSVVLHFLPFT----SQ-TRGKDE-----TNRSPSVHPVLNTCQGETSSPSPLCGFVSL  532 (691)
Q Consensus       463 ~~l~~Dp~~~~~~~vtH~~GVh~VsL~Wv~~l----e~-e~g~d~-----~~~~~~ve~ll~t~~~~~~~~~pl~G~~vi  532 (691)
                      |+|++||.+++||||+|++|||+|+|+|++.|    +. ++++|.     ..++|.|++|+||++..++.++||.||+++
T Consensus       369 I~L~~Dp~~~~ryy~~H~~GvH~V~L~wl~~L~~fl~~~~~~~dsl~~l~~~~~~~Ve~llcT~~~~~~~~~PV~G~~il  448 (717)
T PF10168_consen  369 IRLHRDPLNPDRYYCYHNAGVHSVTLPWLSALQEFLESDEEDKDSLQELASESPCIVEYLLCTKPLSSSAPNPVVGFAIL  448 (717)
T ss_pred             eEEEecCCCCceEEEEecCccEEEEeccHHHHHHHhcccCCccchhhhhcccCCcceEEEeccCCCCCCCCCCceEEEEe
Confidence            99999999999999999999999999999965    22 344442     223556999999999888788999999999


Q ss_pred             cccccceeEEEEecCCcEEEEEecc-ccccccccccccccccccccc------cCCCChHHHHHhHhcCCcccccCCCCC
Q 005546          533 SDSFGYSWIVGVTSTQECVVIEMKT-WNLLLPVQIDSEKKSVDLGAK------KERDTPDIISKELLSGPKVILLPQASP  605 (691)
Q Consensus       533 ~D~lg~~~Ll~lts~~~~v~~~l~~-~~~l~P~~~~~~~~~~~~~~~------~~~~~~~~i~k~ll~gp~~~~~p~~~~  605 (691)
                      +|++||. ||++|++|+|++++|.. .+++.|. ...+.......+.      .....|+...|.||+++...++.. .+
T Consensus       449 ~D~lg~s-ll~lts~~e~v~l~L~~~~~~~~~p-~~~~~~~~~~~~~~~~~l~~~~~sF~~~Ik~lL~r~~~qPill-~s  525 (717)
T PF10168_consen  449 SDVLGYS-LLALTSSGECVVLPLVIDLRLLSPP-LLCEPSDSDSTESPLKPLAESPPSFEKHIKSLLQRSSSQPILL-KS  525 (717)
T ss_pred             cCCCCce-EEEEccCCcEEEEEcccccccCCCc-hhhcCCCCCcccccccccccccchHHHHHHHHhcCCCCCCeec-CC
Confidence            9998888 89999999999999864 4444432 2222111111111      112345666688887654332232 24


Q ss_pred             CCCcccCCChhhhHHHHHHHHHHHHhhHhHHHHHHHHHHhhhhhhhhccccccccccccc
Q 005546          606 NLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVRKLYLNHIKLVLFTSYSMSIEHQDLC  665 (691)
Q Consensus       606 ~~~~~~~~s~E~~~~L~~~~~~l~~~y~~~~~kv~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (691)
                      ..|...+.+.||+++|+||+++|||+|++++|+||+||++|++++  +.. +++|+++++
T Consensus       526 ~~k~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~L--k~~-~e~Ql~~L~  582 (717)
T PF10168_consen  526 SDKSSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLL--KQQ-KEQQLKELQ  582 (717)
T ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHH
Confidence            467888899999999999999999999999999999999999743  333 667776665

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=95.96  E-value=0.37  Score=51.09  Aligned_cols=75  Identities=19%  Similarity=0.303  Sum_probs=56.2

Q ss_pred             ceeeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546          105 NFEVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS  183 (691)
Q Consensus       105 ~feI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT  183 (691)
                      .-||+.+..|++|+|||-.+. +.|=|.++-      +++++.|-.+ |.       ...-.|++|.|||-.| -|+--.
T Consensus       105 EnEVK~Vaws~sG~~LATCSRDKSVWiWe~d------eddEfec~aV-L~-------~HtqDVK~V~WHPt~d-lL~S~S  169 (312)
T KOG0645|consen  105 ENEVKCVAWSASGNYLATCSRDKSVWIWEID------EDDEFECIAV-LQ-------EHTQDVKHVIWHPTED-LLFSCS  169 (312)
T ss_pred             ccceeEEEEcCCCCEEEEeeCCCeEEEEEec------CCCcEEEEee-ec-------cccccccEEEEcCCcc-eeEEec
Confidence            358999999999999999875 578888775      2446777555 22       2334799999999654 344455


Q ss_pred             cCCeEEEEecc
Q 005546          184 SDSVFRLFNLA  194 (691)
Q Consensus       184 sDn~iRlydl~  194 (691)
                      -||+||+|.-.
T Consensus       170 YDnTIk~~~~~  180 (312)
T KOG0645|consen  170 YDNTIKVYRDE  180 (312)
T ss_pred             cCCeEEEEeec
Confidence            69999999875

>PTZ00421 coronin; Provisional

Probab=95.93  E-value=0.75  Score=53.03  Aligned_cols=162  Identities=14%  Similarity=0.141  Sum_probs=95.8

Q ss_pred             CceEEEEeCCCeEEEEECCcceEEEEEe-ecCCCCCCccccCCCceEEecCCCCceeeeEEEeCC-CCCEEEEEec-CeE
Q 005546           52 PKNLVAWDGASRLYYWDQNAQCLHRISV-RLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINR-NGSALLLIGS-DGL  128 (691)
Q Consensus        52 ~rnlla~~g~~~Lfvw~~n~~~l~~~~l-R~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSp-sG~~LAl~G~-~~V  128 (691)
                      ..|++++.+..-.+.|+..+... ++.+ +.+..       ...+.++.-  . .-.|..+.+|| ++++||..+. ..|
T Consensus        32 ~~~~~~~n~~~~a~~w~~~gg~~-v~~~~~~G~~-------~~~~~~l~G--H-~~~V~~v~fsP~d~~~LaSgS~DgtI  100 (493)
T PTZ00421         32 CSNTIACNDRFIAVPWQQLGSTA-VLKHTDYGKL-------ASNPPILLG--Q-EGPIIDVAFNPFDPQKLFTASEDGTI  100 (493)
T ss_pred             CCCcEeECCceEEEEEecCCceE-EeeccccccC-------CCCCceEeC--C-CCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence            45788887655567787655432 2221 11110       112233432  2 34799999999 7888887765 577


Q ss_pred             EEEEeCCCCCCCC-CCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEcc
Q 005546          129 CVMYLYGRTCSSD-NKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQ  207 (691)
Q Consensus       129 ~Vv~LP~~~~~~d-~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~  207 (691)
                      .|-.++....... ...+    ..+       ......|..+.|||.++..|+.-..|++||+||+...  .+.  ..+.
T Consensus       101 kIWdi~~~~~~~~~~~~l----~~L-------~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg--~~~--~~l~  165 (493)
T PTZ00421        101 MGWGIPEEGLTQNISDPI----VHL-------QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG--KAV--EVIK  165 (493)
T ss_pred             EEEecCCCccccccCcce----EEe-------cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC--eEE--EEEc
Confidence            8888874311100 1111    111       1234579999999998888888899999999999742  222  2221


Q ss_pred             cCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEEcc
Q 005546          208 PVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP  252 (691)
Q Consensus       208 ~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYalcP  252 (691)
                      .         -...+.+++|.+.    .-.|.....||-|...-+
T Consensus       166 ~---------h~~~V~sla~spd----G~lLatgs~Dg~IrIwD~  197 (493)
T PTZ00421        166 C---------HSDQITSLEWNLD----GSLLCTTSKDKKLNIIDP  197 (493)
T ss_pred             C---------CCCceEEEEEECC----CCEEEEecCCCEEEEEEC
Confidence            1         1234778888874    223455556787776654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.06  E-value=1  Score=53.32  Aligned_cols=73  Identities=21%  Similarity=0.357  Sum_probs=42.6

Q ss_pred             ceEEEEEecCCCCEEEEE-ecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEec
Q 005546          165 RTLQVSWHPYSDTHLGIL-SSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS  243 (691)
Q Consensus       165 ~I~qv~WHP~sds~LvVL-TsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~  243 (691)
                      .|..+.|--  |+-+.+. ..|-+.|+|.++. ... -..+.++.         -...+|+.-||.    +-+++|.+.+
T Consensus       147 di~si~Ws~--DSr~l~~gsrD~s~rl~~v~~-~k~-~~~~~l~g---------Hkd~VvacfF~~----~~~~l~tvsk  209 (893)
T KOG0291|consen  147 DITSIDWSD--DSRLLVTGSRDLSARLFGVDG-NKN-LFTYALNG---------HKDYVVACFFGA----NSLDLYTVSK  209 (893)
T ss_pred             ceeEEEecc--CCceEEeccccceEEEEEecc-ccc-cceEeccC---------CCcceEEEEecc----CcceEEEEec
Confidence            455555521  4444444 6678889888863 221 11233321         123466666676    5789999999


Q ss_pred             CCcEEEEcccC
Q 005546          244 DGSIYILCPVV  254 (691)
Q Consensus       244 ~GDIYalcP~l  254 (691)
                      ||-++.----+
T Consensus       210 dG~l~~W~~~~  220 (893)
T KOG0291|consen  210 DGALFVWTCDL  220 (893)
T ss_pred             CceEEEEEecC
Confidence            99997654443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=94.95  E-value=0.86  Score=54.91  Aligned_cols=119  Identities=14%  Similarity=0.197  Sum_probs=78.5

Q ss_pred             CceEEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEE-ecCeEEE
Q 005546           52 PKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLI-GSDGLCV  130 (691)
Q Consensus        52 ~rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~-G~~~V~V  130 (691)
                      |-+-+++.|++...+.-+.+-.+.++|..-          .+..+++.   ..+-+|.+|.++|+|.|||++ ++-.|.|
T Consensus        98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D----------~s~~~~lr---gh~apVl~l~~~p~~~fLAvss~dG~v~i  164 (933)
T KOG1274|consen   98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDD----------SSQEKVLR---GHDAPVLQLSYDPKGNFLAVSSCDGKVQI  164 (933)
T ss_pred             cceEEEEecCCcEEEeecCceeEEEEeccc----------cchheeec---ccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence            667778888777777767665555555411          23455665   346789999999999999997 5567888


Q ss_pred             EEeCCCC-CCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEecc
Q 005546          131 MYLYGRT-CSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLA  194 (691)
Q Consensus       131 v~LP~~~-~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~  194 (691)
                      ..|-+.. ..+-+...+|.-        |  ..+..+-+++|||.++ +|++.-.||+|.+|+..
T Consensus       165 w~~~~~~~~~tl~~v~k~n~--------~--~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~  218 (933)
T KOG1274|consen  165 WDLQDGILSKTLTGVDKDNE--------F--ILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRK  218 (933)
T ss_pred             EEcccchhhhhcccCCcccc--------c--cccceeeeeeecCCCC-eEEeeccCCeEEEEccC
Confidence            8886443 111111111111        1  1133578999999875 56677788999999976

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=94.77  E-value=0.36  Score=52.14  Aligned_cols=112  Identities=16%  Similarity=0.228  Sum_probs=73.4

Q ss_pred             CCCCceEEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEec-Ce
Q 005546           49 NGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS-DG  127 (691)
Q Consensus        49 ~~~~rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~-~~  127 (691)
                      +.+.+.++++.-++.|.+|+.+++.|-.+|-.                .        ..-....+||+|+|+|..|= -.
T Consensus       196 A~~~k~imsas~dt~i~lw~lkGq~L~~idtn----------------q--------~~n~~aavSP~GRFia~~gFTpD  251 (420)
T KOG2096|consen  196 AGNAKYIMSASLDTKICLWDLKGQLLQSIDTN----------------Q--------SSNYDAAVSPDGRFIAVSGFTPD  251 (420)
T ss_pred             cCCceEEEEecCCCcEEEEecCCceeeeeccc----------------c--------ccccceeeCCCCcEEEEecCCCC
Confidence            34578899888899999999987655444421                1        12234579999999999985 46


Q ss_pred             EEEEEeC-CCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546          128 LCVMYLY-GRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS  195 (691)
Q Consensus       128 V~Vv~LP-~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~  195 (691)
                      |-|-++= .+-+.+.  +. .|.+.|-       ...+.|..+.|.|.| .-.+....|+.+|+||++.
T Consensus       252 VkVwE~~f~kdG~fq--ev-~rvf~Lk-------GH~saV~~~aFsn~S-~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  252 VKVWEPIFTKDGTFQ--EV-KRVFSLK-------GHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             ceEEEEEeccCcchh--hh-hhhheec-------cchhheeeeeeCCCc-ceeEEEecCCcEEEeeccc
Confidence            7776652 1112211  11 3445443       344566666666655 4567889999999999985

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=94.68  E-value=3.3  Score=40.23  Aligned_cols=111  Identities=18%  Similarity=0.136  Sum_probs=70.6

Q ss_pred             eeeeEEEeCCCCCEEEEEe-cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEec
Q 005546          106 FEVSRISINRNGSALLLIG-SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS  184 (691)
Q Consensus       106 feI~~i~lSpsG~~LAl~G-~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs  184 (691)
                      ..|..+..++++++++..+ ...|.+..+...      ..  ...+.         .....|..+.|+|. +..+++-..
T Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~--~~~~~---------~~~~~i~~~~~~~~-~~~l~~~~~  155 (289)
T cd00200          94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETG------KC--LTTLR---------GHTDWVNSVAFSPD-GTFVASSSQ  155 (289)
T ss_pred             CcEEEEEEcCCCCEEEEecCCCeEEEEECCCc------EE--EEEec---------cCCCcEEEEEEcCc-CCEEEEEcC
Confidence            3688999999999999888 778888877511      11  11111         12346899999998 444444444


Q ss_pred             CCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEEc
Q 005546          185 DSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILC  251 (691)
Q Consensus       185 Dn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYalc  251 (691)
                      |+.|++||+..  ..+.+.+..+           ...+.+++|.+.    .-.+++...+|.|+..-
T Consensus       156 ~~~i~i~d~~~--~~~~~~~~~~-----------~~~i~~~~~~~~----~~~l~~~~~~~~i~i~d  205 (289)
T cd00200         156 DGTIKLWDLRT--GKCVATLTGH-----------TGEVNSVAFSPD----GEKLLSSSSDGTIKLWD  205 (289)
T ss_pred             CCcEEEEEccc--cccceeEecC-----------ccccceEEECCC----cCEEEEecCCCcEEEEE
Confidence            99999999963  2222233211           224677888774    33566666688877654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=93.80  E-value=2.7  Score=40.87  Aligned_cols=110  Identities=19%  Similarity=0.140  Sum_probs=71.0

Q ss_pred             eeeeEEEeCCCCCEEEEEe-cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEec
Q 005546          106 FEVSRISINRNGSALLLIG-SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS  184 (691)
Q Consensus       106 feI~~i~lSpsG~~LAl~G-~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs  184 (691)
                      -.|..+.++|+|++|+..+ +..|.|..+...      ...  +.+         ......+..+.|+|.+ ..|++...
T Consensus        10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~------~~~--~~~---------~~~~~~i~~~~~~~~~-~~l~~~~~   71 (289)
T cd00200          10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETG------ELL--RTL---------KGHTGPVRDVAASADG-TYLASGSS   71 (289)
T ss_pred             CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC------CcE--EEE---------ecCCcceeEEEECCCC-CEEEEEcC
Confidence            4689999999999999988 567777776522      111  111         1223457899999976 68888888


Q ss_pred             CCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEec-CCcEEEEc
Q 005546          185 DSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS-DGSIYILC  251 (691)
Q Consensus       185 Dn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~-~GDIYalc  251 (691)
                      |+.|++|++...  .....+..           ....+.+++|.+.    . .+++... +|.|+..-
T Consensus        72 ~~~i~i~~~~~~--~~~~~~~~-----------~~~~i~~~~~~~~----~-~~~~~~~~~~~i~~~~  121 (289)
T cd00200          72 DKTIRLWDLETG--ECVRTLTG-----------HTSYVSSVAFSPD----G-RILSSSSRDKTIKVWD  121 (289)
T ss_pred             CCeEEEEEcCcc--cceEEEec-----------cCCcEEEEEEcCC----C-CEEEEecCCCeEEEEE
Confidence            999999999742  12112211           1225777888874    2 2333343 78877654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=93.73  E-value=1.2  Score=52.03  Aligned_cols=71  Identities=15%  Similarity=0.254  Sum_probs=55.1

Q ss_pred             eeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecC
Q 005546          107 EVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD  185 (691)
Q Consensus       107 eI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsD  185 (691)
                      -|.+|.+|+.|+|+|+++. +.|+|..|-..       ...|  +.        ......|.-+.+||...+.|||-|+|
T Consensus       477 ~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~-------~~~~--l~--------~rln~~vTa~~~~~~~~~~lvvats~  539 (691)
T KOG2048|consen  477 SISRLVVSSDGNYIAAISTRGQIFVYNLETL-------ESHL--LK--------VRLNIDVTAAAFSPFVRNRLVVATSN  539 (691)
T ss_pred             cceeEEEcCCCCEEEEEeccceEEEEEcccc-------eeec--ch--------hccCcceeeeeccccccCcEEEEecC
Confidence            5899999999999999876 47778777532       1111  11        12235688899999999999999999


Q ss_pred             CeEEEEecc
Q 005546          186 SVFRLFNLA  194 (691)
Q Consensus       186 n~iRlydl~  194 (691)
                      |.+-.||+.
T Consensus       540 nQv~efdi~  548 (691)
T KOG2048|consen  540 NQVFEFDIE  548 (691)
T ss_pred             CeEEEEecc
Confidence            999999994

>PTZ00420 coronin; Provisional

Probab=92.71  E-value=12  Score=44.17  Aligned_cols=161  Identities=10%  Similarity=0.068  Sum_probs=89.5

Q ss_pred             eEEEEeCCCeEEEEECC-cceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCC-CCEEEEEec-CeEEE
Q 005546           54 NLVAWDGASRLYYWDQN-AQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRN-GSALLLIGS-DGLCV  130 (691)
Q Consensus        54 nlla~~g~~~Lfvw~~n-~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSps-G~~LAl~G~-~~V~V  130 (691)
                      +.+++.+.--.+.|+.. ++.+-++.+-... .      ......+..  . .-.|..+..||. +++||-.|. ..|.|
T Consensus        32 ~~ia~n~~~~A~~w~~~gGG~~gvI~L~~~~-r------~~~v~~L~g--H-~~~V~~lafsP~~~~lLASgS~DgtIrI  101 (568)
T PTZ00420         32 CGIACSSGFVAVPWEVEGGGLIGAIRLENQM-R------KPPVIKLKG--H-TSSILDLQFNPCFSEILASGSEDLTIRV  101 (568)
T ss_pred             eeEeeCCCeEEEEEEcCCCCceeEEEeeecC-C------CceEEEEcC--C-CCCEEEEEEcCCCCCEEEEEeCCCeEEE
Confidence            55676654556667643 3333333331110 0      112334432  2 247999999997 788887765 57888


Q ss_pred             EEeCCCCCCCCCCce-EEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEcccC
Q 005546          131 MYLYGRTCSSDNKTI-ICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPV  209 (691)
Q Consensus       131 v~LP~~~~~~d~~~i-~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~  209 (691)
                      -.++.....  ...+ .+. ..+       ......|..+.|||.+...|+.-..|++||+||+... .   ..+.+.. 
T Consensus       102 WDi~t~~~~--~~~i~~p~-~~L-------~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg-~---~~~~i~~-  166 (568)
T PTZ00420        102 WEIPHNDES--VKEIKDPQ-CIL-------KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE-K---RAFQINM-  166 (568)
T ss_pred             EECCCCCcc--ccccccce-EEe-------ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-c---EEEEEec-
Confidence            888743110  0000 010 011       1233579999999987666677778999999999742 2   1222310 


Q ss_pred             CCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEEcc
Q 005546          210 EPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP  252 (691)
Q Consensus       210 ~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYalcP  252 (691)
                               ...+.+++|.+.    +-.|.....||.|...-|
T Consensus       167 ---------~~~V~Slswspd----G~lLat~s~D~~IrIwD~  196 (568)
T PTZ00420        167 ---------PKKLSSLKWNIK----GNLLSGTCVGKHMHIIDP  196 (568)
T ss_pred             ---------CCcEEEEEECCC----CCEEEEEecCCEEEEEEC
Confidence                     124677888774    222333345777766644

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.91  E-value=0.81  Score=45.15  Aligned_cols=86  Identities=10%  Similarity=0.208  Sum_probs=51.9

Q ss_pred             eEEEeCCCCCEEEEEecCeEEEEE--eCCC---C-CC-----------CCCCceEEEEE------Eecceeee-ecCCcc
Q 005546          109 SRISINRNGSALLLIGSDGLCVMY--LYGR---T-CS-----------SDNKTIICRTV------SVGSQIYF-SSSNVI  164 (691)
Q Consensus       109 ~~i~lSpsG~~LAl~G~~~V~Vv~--LP~~---~-~~-----------~d~~~i~crt~------~v~~~~~~-~s~~~~  164 (691)
                      .-|.-|.+| .|||++.+.|+|+.  +|..   . ..           .+...+++...      ...+..+- ......
T Consensus         8 ~~l~WS~Dg-~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~   86 (173)
T PF12657_consen    8 NALAWSEDG-QLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISSS   86 (173)
T ss_pred             cCeeECCCC-CEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceeccccccccccccc
Confidence            356788998 78999999999993  4541   0 00           01112222222      11111000 011223


Q ss_pred             ceEEEEEecCC----CCEE-EEEecCCeEEEEeccC
Q 005546          165 RTLQVSWHPYS----DTHL-GILSSDSVFRLFNLAS  195 (691)
Q Consensus       165 ~I~qv~WHP~s----ds~L-vVLTsDn~iRlydl~~  195 (691)
                      .|+++.|-|.+    ..|| .|||+++.|-+|.-..
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            89999999987    3555 5999999999999764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=91.36  E-value=4.3  Score=43.42  Aligned_cols=115  Identities=17%  Similarity=0.329  Sum_probs=69.2

Q ss_pred             EEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEE-EEecCCeE
Q 005546          110 RISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLG-ILSSDSVF  188 (691)
Q Consensus       110 ~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~Lv-VLTsDn~i  188 (691)
                      |++++.+|++||++-+..|.|=     +++.|-.++.+|+ +|..      .+..+=+++.|-|  |..|+ .-.|.++|
T Consensus         2 ~~~~~~~Gk~lAi~qd~~iEiR-----sa~Ddf~si~~kc-qVpk------D~~PQWRkl~WSp--D~tlLa~a~S~G~i   67 (282)
T PF15492_consen    2 HLALSSDGKLLAILQDQCIEIR-----SAKDDFSSIIGKC-QVPK------DPNPQWRKLAWSP--DCTLLAYAESTGTI   67 (282)
T ss_pred             ceeecCCCcEEEEEeccEEEEE-----eccCCchheeEEE-ecCC------CCCchheEEEECC--CCcEEEEEcCCCeE
Confidence            6789999999999998766552     3443344555555 4532      3445789999942  54555 55567999


Q ss_pred             EEEeccCCCCCCcEEEEcccCCCCCCC-CCCCCceEEEEecCC---CCCCceEEEEEecCCcE
Q 005546          189 RLFNLASDVMQPEQEYYLQPVEPGRYR-NAASICPVDFSFGGD---HLWDRFSVFVLFSDGSI  247 (691)
Q Consensus       189 Rlydl~~~~~~p~q~~~L~~~~~g~s~-~~s~~~avsf~FG~~---~~W~~~TLyiL~~~GDI  247 (691)
                      |+||+.-  ..   -|.+.|   +.+. +..+..+++..|-..   ..|. .=|+++.-.|.+
T Consensus        68 ~vfdl~g--~~---lf~I~p---~~~~~~d~~~Aiagl~Fl~~~~s~~ws-~ELlvi~Y~G~L  121 (282)
T PF15492_consen   68 RVFDLMG--SE---LFVIPP---AMSFPGDLSDAIAGLIFLEYKKSAQWS-YELLVINYRGQL  121 (282)
T ss_pred             EEEeccc--ce---eEEcCc---ccccCCccccceeeeEeeccccccccc-eeEEEEecccee
Confidence            9999962  21   355543   2211 122445778888864   3442 234444444444

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=91.05  E-value=2.1  Score=47.38  Aligned_cols=80  Identities=24%  Similarity=0.351  Sum_probs=58.8

Q ss_pred             ceeeeEEEeCCCCCEEEEEecC-eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546          105 NFEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS  183 (691)
Q Consensus       105 ~feI~~i~lSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT  183 (691)
                      .-+|.-|.-|..-.+||-=|+. ++.|..|..-.+   +       -+|+.   |. ....+|..+.|||..++.+.+--
T Consensus       302 ~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~---~-------~pVA~---fk-~Hk~pItsieW~p~e~s~iaasg  367 (440)
T KOG0302|consen  302 NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS---G-------QPVAT---FK-YHKAPITSIEWHPHEDSVIAASG  367 (440)
T ss_pred             CCceeeEEccCCcceeeecCCCceEEEEEhhhccC---C-------Cccee---EE-eccCCeeEEEeccccCceEEecc
Confidence            4588999999998866665554 688888862211   1       12321   11 23458999999999999999999


Q ss_pred             cCCeEEEEeccCCCC
Q 005546          184 SDSVFRLFNLASDVM  198 (691)
Q Consensus       184 sDn~iRlydl~~~~~  198 (691)
                      +||+|.+||++.+..
T Consensus       368 ~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  368 EDNQITIWDLSVEAD  382 (440)
T ss_pred             CCCcEEEEEeeccCC
Confidence            999999999987544

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=90.82  E-value=11  Score=40.42  Aligned_cols=128  Identities=12%  Similarity=0.130  Sum_probs=80.6

Q ss_pred             eEEEEeCCCeEEEEECCcceEEEEEeecCC-------CCCCcc--ccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEe
Q 005546           54 NLVAWDGASRLYYWDQNAQCLHRISVRLGE-------PDPTSI--LAAFPSKVMRADVKLNFEVSRISINRNGSALLLIG  124 (691)
Q Consensus        54 nlla~~g~~~Lfvw~~n~~~l~~~~lR~~~-------~~~~~~--~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G  124 (691)
                      |+.-..|+.+|=.+++....+..+++-|..       ++..-.  .-..+..+-...  ..-.|+.+-+|..|++.++..
T Consensus        35 ~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~t  112 (327)
T KOG0643|consen   35 TVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGNLILAST  112 (327)
T ss_pred             eEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEe
Confidence            445444568888888887777766654442       111000  001112222211  234689999999999999987


Q ss_pred             cC------eEEEEEeCCCCCCCCC-CceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546          125 SD------GLCVMYLYGRTCSSDN-KTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS  195 (691)
Q Consensus       125 ~~------~V~Vv~LP~~~~~~d~-~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~  195 (691)
                      ++      .|.|.++++..+.-+. +++           +...-+.+.|.+|.|-|+++ +|+.=-+|+.|+.||+..
T Consensus       113 D~~mg~~~~v~~fdi~~~~~~~~s~ep~-----------~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~  178 (327)
T KOG0643|consen  113 DKQMGYTCFVSVFDIRDDSSDIDSEEPY-----------LKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDART  178 (327)
T ss_pred             hhhcCcceEEEEEEccCChhhhcccCce-----------EEecCCccceeeeeecccCC-EEEEecCCCcEEEEEccc
Confidence            75      7889999865432111 111           12223456899999999864 677788999999999985

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=90.74  E-value=8  Score=46.30  Aligned_cols=122  Identities=16%  Similarity=0.147  Sum_probs=80.0

Q ss_pred             CCCceEEecCCCCceeeeEEEeCCCCCEEEEEecC--eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEE
Q 005546           92 AFPSKVMRADVKLNFEVSRISINRNGSALLLIGSD--GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQV  169 (691)
Q Consensus        92 ~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~--~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv  169 (691)
                      ..+||++....|+  +..-+.+-|+|.++|.-+-.  .|.|..+-  .|    ..+       +    ..+.+..+|...
T Consensus       424 YrNfRTft~P~p~--QfscvavD~sGelV~AG~~d~F~IfvWS~q--TG----qll-------D----iLsGHEgPVs~l  484 (893)
T KOG0291|consen  424 YRNFRTFTSPEPI--QFSCVAVDPSGELVCAGAQDSFEIFVWSVQ--TG----QLL-------D----ILSGHEGPVSGL  484 (893)
T ss_pred             cceeeeecCCCce--eeeEEEEcCCCCEEEeeccceEEEEEEEee--cC----eee-------e----hhcCCCCcceee
Confidence            4578998865554  66789999999988765443  44444332  11    111       1    234566778877


Q ss_pred             EEecCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEE
Q 005546          170 SWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYI  249 (691)
Q Consensus       170 ~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYa  249 (691)
                      .+.|.++ +|+-..=|++||+||+-....+ ..++.+.            .+|.+++|.|+    +--|-+++-||.|--
T Consensus       485 ~f~~~~~-~LaS~SWDkTVRiW~if~s~~~-vEtl~i~------------sdvl~vsfrPd----G~elaVaTldgqItf  546 (893)
T KOG0291|consen  485 SFSPDGS-LLASGSWDKTVRIWDIFSSSGT-VETLEIR------------SDVLAVSFRPD----GKELAVATLDGQITF  546 (893)
T ss_pred             EEccccC-eEEeccccceEEEEEeeccCce-eeeEeec------------cceeEEEEcCC----CCeEEEEEecceEEE
Confidence            7777766 8888888999999999743222 2244442            35888999984    456777888887755


Q ss_pred             E
Q 005546          250 L  250 (691)
Q Consensus       250 l  250 (691)
                      .
T Consensus       547 ~  547 (893)
T KOG0291|consen  547 F  547 (893)
T ss_pred             E
Confidence            4

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=90.55  E-value=0.6  Score=53.19  Aligned_cols=105  Identities=12%  Similarity=0.164  Sum_probs=63.2

Q ss_pred             CceEEecCCCCceeeeEEEeCCCCC-EEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEe
Q 005546           94 PSKVMRADVKLNFEVSRISINRNGS-ALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWH  172 (691)
Q Consensus        94 ~yk~L~~~~pl~feI~~i~lSpsG~-~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WH  172 (691)
                      .+|.|.+--  .-.|+.+..|++|. +|++.|+.+.-|+   +|-+..-.+-++---|-++  .+-+..+-..|....||
T Consensus       205 ~fr~l~P~E--~h~i~sl~ys~Tg~~iLvvsg~aqakl~---DRdG~~~~e~~KGDQYI~D--m~nTKGHia~lt~g~wh  277 (641)
T KOG0772|consen  205 SFRQLQPCE--THQINSLQYSVTGDQILVVSGSAQAKLL---DRDGFEIVEFSKGDQYIRD--MYNTKGHIAELTCGCWH  277 (641)
T ss_pred             hhhccCccc--ccccceeeecCCCCeEEEEecCcceeEE---ccCCceeeeeeccchhhhh--hhccCCceeeeeccccc
Confidence            367776422  46899999999976 5566677766655   4432200000000011111  11233345577888999


Q ss_pred             cCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEc
Q 005546          173 PYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYL  206 (691)
Q Consensus       173 P~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L  206 (691)
                      |.....+++-..|+++|+||+.+ ..+--|.|--
T Consensus       278 P~~k~~FlT~s~DgtlRiWdv~~-~k~q~qVik~  310 (641)
T KOG0772|consen  278 PDNKEEFLTCSYDGTLRIWDVNN-TKSQLQVIKT  310 (641)
T ss_pred             cCcccceEEecCCCcEEEEecCC-chhheeEEee
Confidence            99988888889999999999985 3333334433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.42  E-value=1.1  Score=32.28  Aligned_cols=31  Identities=23%  Similarity=0.429  Sum_probs=27.7

Q ss_pred             CCccceEEEEEecCCCCEEEEEecCCeEEEEe
Q 005546          161 SNVIRTLQVSWHPYSDTHLGILSSDSVFRLFN  192 (691)
Q Consensus       161 ~~~~~I~qv~WHP~sds~LvVLTsDn~iRlyd  192 (691)
                      .....|..+.|||. +.+|++-..|++||+||
T Consensus         9 ~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    9 GHSSSINSIAWSPD-GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred             CCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence            34568999999999 88999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PTZ00421 coronin; Provisional

Probab=90.28  E-value=22  Score=41.19  Aligned_cols=81  Identities=12%  Similarity=0.205  Sum_probs=50.4

Q ss_pred             eeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe--
Q 005546          107 EVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS--  183 (691)
Q Consensus       107 eI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT--  183 (691)
                      .|..+..||+|++||..+. ..|.|.++..      +..  ..++  .      .+.+..+.++.|+|..+..+.+-.  
T Consensus       170 ~V~sla~spdG~lLatgs~Dg~IrIwD~rs------g~~--v~tl--~------~H~~~~~~~~~w~~~~~~ivt~G~s~  233 (493)
T PTZ00421        170 QITSLEWNLDGSLLCTTSKDKKLNIIDPRD------GTI--VSSV--E------AHASAKSQRCLWAKRKDLIITLGCSK  233 (493)
T ss_pred             ceEEEEEECCCCEEEEecCCCEEEEEECCC------CcE--EEEE--e------cCCCCcceEEEEcCCCCeEEEEecCC
Confidence            5889999999999988775 4677776641      111  1122  1      112234567899997654333332  


Q ss_pred             -cCCeEEEEeccCCCCCCcEEE
Q 005546          184 -SDSVFRLFNLASDVMQPEQEY  204 (691)
Q Consensus       184 -sDn~iRlydl~~~~~~p~q~~  204 (691)
                       +|+.|++||+. ....|...+
T Consensus       234 s~Dr~VklWDlr-~~~~p~~~~  254 (493)
T PTZ00421        234 SQQRQIMLWDTR-KMASPYSTV  254 (493)
T ss_pred             CCCCeEEEEeCC-CCCCceeEe
Confidence             48999999996 344454333

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=89.40  E-value=5.9  Score=44.56  Aligned_cols=152  Identities=18%  Similarity=0.210  Sum_probs=92.9

Q ss_pred             CeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEec--CeEEEEEeCCCCCC
Q 005546           62 SRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS--DGLCVMYLYGRTCS  139 (691)
Q Consensus        62 ~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~--~~V~Vv~LP~~~~~  139 (691)
                      ..||.-.+..++|...|.|.. ..       ...+.....   .-+|.-+.+||-+.++...|+  .+|.+-+|..-   
T Consensus       240 ~~lF~sv~dd~~L~iwD~R~~-~~-------~~~~~~~ah---~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL---  305 (422)
T KOG0264|consen  240 EDLFGSVGDDGKLMIWDTRSN-TS-------KPSHSVKAH---SAEVNCVAFNPFNEFILATGSADKTVALWDLRNL---  305 (422)
T ss_pred             hhhheeecCCCeEEEEEcCCC-CC-------CCccccccc---CCceeEEEeCCCCCceEEeccCCCcEEEeechhc---
Confidence            456666666777777777763 11       122232211   357889999999887777665  67887777521   


Q ss_pred             CCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCC-CcEEEEcccCCCCCCCCCC
Q 005546          140 SDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQ-PEQEYYLQPVEPGRYRNAA  218 (691)
Q Consensus       140 ~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~-p~q~~~L~~~~~g~s~~~s  218 (691)
                             |+  +    .|.....+-.|.||.|-|.-+++|+.=-+|+.+.+||+++-+++ +.++-.=.|  ++--|--.
T Consensus       306 -------~~--~----lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgp--pEllF~Hg  370 (422)
T KOG0264|consen  306 -------NK--P----LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGP--PELLFIHG  370 (422)
T ss_pred             -------cc--C----ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCC--cceeEEec
Confidence                   11  1    12233566789999999999999999999999999999874332 101100000  00000000


Q ss_pred             C--CceEEEEecCCCCCCceEEEEEecCC
Q 005546          219 S--ICPVDFSFGGDHLWDRFSVFVLFSDG  245 (691)
Q Consensus       219 ~--~~avsf~FG~~~~W~~~TLyiL~~~G  245 (691)
                      |  -.+.+|++-|.   .+++|--+..|+
T Consensus       371 GH~~kV~DfsWnp~---ePW~I~SvaeDN  396 (422)
T KOG0264|consen  371 GHTAKVSDFSWNPN---EPWTIASVAEDN  396 (422)
T ss_pred             CcccccccccCCCC---CCeEEEEecCCc
Confidence            1  24788888886   466666666664

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=88.15  E-value=11  Score=46.98  Aligned_cols=136  Identities=20%  Similarity=0.154  Sum_probs=81.0

Q ss_pred             ceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEec
Q 005546          105 NFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS  184 (691)
Q Consensus       105 ~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs  184 (691)
                      ...|..|.-|++|+.||+.-...|.+-..-   -+        + +-+--.+.|...  ..+..+.|||...-.|.++|+
T Consensus       304 ~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~---NY--------H-WYLKqei~~~~~--~~~~~~~Wdpe~p~~L~v~t~  369 (928)
T PF04762_consen  304 EEKVIELAWNSDSEILAVWLEDRVQLWTRS---NY--------H-WYLKQEIRFSSS--ESVNFVKWDPEKPLRLHVLTS  369 (928)
T ss_pred             CceeeEEEECCCCCEEEEEecCCceEEEee---CC--------E-EEEEEEEEccCC--CCCCceEECCCCCCEEEEEec
Confidence            568899999999999999887774332221   11        0 111101223222  235559999999999999999


Q ss_pred             CCeEEEEeccC----CCCCCcE----EEEccc----CCCCCCCCC----------CCCceEEEEecCCCCCCceEEEEEe
Q 005546          185 DSVFRLFNLAS----DVMQPEQ----EYYLQP----VEPGRYRNA----------ASICPVDFSFGGDHLWDRFSVFVLF  242 (691)
Q Consensus       185 Dn~iRlydl~~----~~~~p~q----~~~L~~----~~~g~s~~~----------s~~~avsf~FG~~~~W~~~TLyiL~  242 (691)
                      ++.+..|+...    +...+..    ......    ..+-+....          ....+++++|++.+.    .+.+++
T Consensus       370 ~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~----~~avl~  445 (928)
T PF04762_consen  370 NGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS----RFAVLT  445 (928)
T ss_pred             CCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC----eEEEEE
Confidence            88888777753    1111110    111100    000010010          134688999998532    289999


Q ss_pred             cCCcEEEEcccCCCCC
Q 005546          243 SDGSIYILCPVVPFGS  258 (691)
Q Consensus       243 ~~GDIYalcP~lP~~~  258 (691)
                      .||.|+....-....+
T Consensus       446 ~d~~l~~~~~~~~~~~  461 (928)
T PF04762_consen  446 SDGSLSIYEWDLKNMW  461 (928)
T ss_pred             CCCCEEEEEecCCCcc
Confidence            9999998886665544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=88.10  E-value=10  Score=46.05  Aligned_cols=80  Identities=15%  Similarity=0.286  Sum_probs=54.0

Q ss_pred             eeeeEEEeCCCCCEEEEEecC-eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEec
Q 005546          106 FEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS  184 (691)
Q Consensus       106 feI~~i~lSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs  184 (691)
                      ..|..+.++|+|++||..|.. .|.|-++.....  +...+..-...+        .....|..+.|+|..+..|++-..
T Consensus       484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--~~~~~~~~~~~~--------~~~~~v~~l~~~~~~~~~las~~~  553 (793)
T PLN00181        484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK--DGRDIHYPVVEL--------ASRSKLSGICWNSYIKSQVASSNF  553 (793)
T ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc--cccccccceEEe--------cccCceeeEEeccCCCCEEEEEeC
Confidence            458899999999999998864 666666542110  111110001111        112368899999988888999999


Q ss_pred             CCeEEEEeccC
Q 005546          185 DSVFRLFNLAS  195 (691)
Q Consensus       185 Dn~iRlydl~~  195 (691)
                      |++||+||+..
T Consensus       554 Dg~v~lWd~~~  564 (793)
T PLN00181        554 EGVVQVWDVAR  564 (793)
T ss_pred             CCeEEEEECCC
Confidence            99999999973

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=88.06  E-value=17  Score=39.54  Aligned_cols=122  Identities=15%  Similarity=0.229  Sum_probs=69.6

Q ss_pred             CCceEEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEE-
Q 005546           51 APKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLC-  129 (691)
Q Consensus        51 ~~rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~-  129 (691)
                      ..|++.|.+-.+.+|+...+...+..-|+|.-..        .++.+..+..+-.-+..+|..||+|+++.|.+.++.+ 
T Consensus       141 ~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk--------gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~  212 (311)
T KOG1446|consen  141 SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDK--------GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIY  212 (311)
T ss_pred             CCCcceeECCCCcEEEEecCCCeEEEEEecccCC--------CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEE
Confidence            4677777776555555544333333447766542        3455554432224589999999999999999888754 


Q ss_pred             EEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546          130 VMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS  195 (691)
Q Consensus       130 Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~  195 (691)
                      |+.=+      ++. +.+ ++..-+    . ..... ..+.+-|.| ..++.=..|++|.+|++..
T Consensus       213 ~lDAf------~G~-~~~-tfs~~~----~-~~~~~-~~a~ftPds-~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  213 LLDAF------DGT-VKS-TFSGYP----N-AGNLP-LSATFTPDS-KFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             EEEcc------CCc-Eee-eEeecc----C-CCCcc-eeEEECCCC-cEEEEecCCCcEEEEEcCC
Confidence            44333      222 222 332211    1 11222 455555544 2344445569999999964

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.00  E-value=9.3  Score=43.47  Aligned_cols=111  Identities=19%  Similarity=0.184  Sum_probs=70.8

Q ss_pred             ceeeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546          105 NFEVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS  183 (691)
Q Consensus       105 ~feI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT  183 (691)
                      .+.|..+.++|+|++++=.+. .++.|-+++.+     ...  -|++.         .+...|-.+.|||.+ .-++--.
T Consensus       203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-----~~~--~~~l~---------gH~~~v~~~~f~p~g-~~i~Sgs  265 (456)
T KOG0266|consen  203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-----GRN--LKTLK---------GHSTYVTSVAFSPDG-NLLVSGS  265 (456)
T ss_pred             ccceeeeEECCCCcEEEEecCCceEEEeeccCC-----CeE--EEEec---------CCCCceEEEEecCCC-CEEEEec
Confidence            468999999999987665544 57777777422     111  12221         234468999999999 8888999


Q ss_pred             cCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEE
Q 005546          184 SDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYI  249 (691)
Q Consensus       184 sDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYa  249 (691)
                      .|++||+||+..  .++...+..+           ..-+.+.+|.++    .--|+....||-|..
T Consensus       266 ~D~tvriWd~~~--~~~~~~l~~h-----------s~~is~~~f~~d----~~~l~s~s~d~~i~v  314 (456)
T KOG0266|consen  266 DDGTVRIWDVRT--GECVRKLKGH-----------SDGISGLAFSPD----GNLLVSASYDGTIRV  314 (456)
T ss_pred             CCCcEEEEeccC--CeEEEeeecc-----------CCceEEEEECCC----CCEEEEcCCCccEEE
Confidence            999999999974  3343333332           123566777774    333444444554433

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=87.79  E-value=2.3  Score=47.60  Aligned_cols=105  Identities=18%  Similarity=0.176  Sum_probs=66.1

Q ss_pred             eeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCC-CCEEEEEecC
Q 005546          107 EVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS-DTHLGILSSD  185 (691)
Q Consensus       107 eI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s-ds~LvVLTsD  185 (691)
                      .|....+|++|..||-.+=.+++=|     |+..+. ...|        +|.  ....+|.-+.|||.. +-+|+.-..|
T Consensus       177 Pis~~~fS~ds~~laT~swsG~~kv-----W~~~~~-~~~~--------~l~--gH~~~v~~~~fhP~~~~~~lat~s~D  240 (459)
T KOG0272|consen  177 PISGCSFSRDSKHLATGSWSGLVKV-----WSVPQC-NLLQ--------TLR--GHTSRVGAAVFHPVDSDLNLATASAD  240 (459)
T ss_pred             cceeeEeecCCCeEEEeecCCceeE-----eecCCc-ceeE--------EEe--ccccceeeEEEccCCCccceeeeccC
Confidence            4667888999998887655544332     332222 1222        111  345689999999995 8899999999


Q ss_pred             CeEEEEeccCCCCCCcEEEEcccCCCC-CCCCCCCCceEEEEecC
Q 005546          186 SVFRLFNLASDVMQPEQEYYLQPVEPG-RYRNAASICPVDFSFGG  229 (691)
Q Consensus       186 n~iRlydl~~~~~~p~q~~~L~~~~~g-~s~~~s~~~avsf~FG~  229 (691)
                      +++++|+++.  +.|-|++.=+...-+ -.|.-+|....+.||-.
T Consensus       241 gtvklw~~~~--e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~  283 (459)
T KOG0272|consen  241 GTVKLWKLSQ--ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDS  283 (459)
T ss_pred             CceeeeccCC--CcchhhhhcchhhheeeeecCCCceeeeccccc
Confidence            9999999974  456555543321111 12333466667777765

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=87.75  E-value=44  Score=38.02  Aligned_cols=136  Identities=13%  Similarity=0.108  Sum_probs=81.1

Q ss_pred             CceEEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEecCe-EEE
Q 005546           52 PKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDG-LCV  130 (691)
Q Consensus        52 ~rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~-V~V  130 (691)
                      |-+.+...-.++.|+|-+|++++.+-++|.+.          .|-...-+ .-+.++..+.+-|+|-.++.....+ |-|
T Consensus       305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~----------~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vki  373 (506)
T KOG0289|consen  305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGS----------QLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKI  373 (506)
T ss_pred             cceeeeeccCCcEEEEecCCceEEEEEccCCc----------EEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEE
Confidence            44555555579999999999999888886552          12222111 1135788999999999888877664 344


Q ss_pred             EEeCCCC--CCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEccc
Q 005546          131 MYLYGRT--CSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQP  208 (691)
Q Consensus       131 v~LP~~~--~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~  208 (691)
                      -+|-.+.  ++|.+                   ...+|+.+.|--. +=-|++=++|+.|++|||.+..  --++|.+..
T Consensus       374 wdlks~~~~a~Fpg-------------------ht~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~--n~kt~~l~~  431 (506)
T KOG0289|consen  374 WDLKSQTNVAKFPG-------------------HTGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLK--NFKTIQLDE  431 (506)
T ss_pred             EEcCCccccccCCC-------------------CCCceeEEEeccC-ceEEEEEecCCeEEEEEehhhc--ccceeeccc
Confidence            4443221  12221                   2234444443111 2357788888889999998643  223454421


Q ss_pred             CCCCCCCCCCCCceEEEEecCC
Q 005546          209 VEPGRYRNAASICPVDFSFGGD  230 (691)
Q Consensus       209 ~~~g~s~~~s~~~avsf~FG~~  230 (691)
                                ..++++.+|...
T Consensus       432 ----------~~~v~s~~fD~S  443 (506)
T KOG0289|consen  432 ----------KKEVNSLSFDQS  443 (506)
T ss_pred             ----------cccceeEEEcCC
Confidence                      225677777653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=87.35  E-value=18  Score=41.27  Aligned_cols=74  Identities=22%  Similarity=0.343  Sum_probs=47.4

Q ss_pred             eeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCC--------CC
Q 005546          106 FEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS--------DT  177 (691)
Q Consensus       106 feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s--------ds  177 (691)
                      -+|.-|..||+|.+||-..+.+-  +.|   |+..+...  +..+..         .+-.|..+.|-|-+        +.
T Consensus       360 g~V~alk~n~tg~LLaS~SdD~T--lki---Ws~~~~~~--~~~l~~---------Hskei~t~~wsp~g~v~~n~~~~~  423 (524)
T KOG0273|consen  360 GEVNALKWNPTGSLLASCSDDGT--LKI---WSMGQSNS--VHDLQA---------HSKEIYTIKWSPTGPVTSNPNMNL  423 (524)
T ss_pred             CceEEEEECCCCceEEEecCCCe--eEe---eecCCCcc--hhhhhh---------hccceeeEeecCCCCccCCCcCCc
Confidence            38899999999999998877642  222   43212111  222211         12246666666654        57


Q ss_pred             EEEEEecCCeEEEEeccC
Q 005546          178 HLGILSSDSVFRLFNLAS  195 (691)
Q Consensus       178 ~LvVLTsDn~iRlydl~~  195 (691)
                      .|+--.+|+++|+||+..
T Consensus       424 ~l~sas~dstV~lwdv~~  441 (524)
T KOG0273|consen  424 MLASASFDSTVKLWDVES  441 (524)
T ss_pred             eEEEeecCCeEEEEEccC
Confidence            788888999999999974

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=86.86  E-value=47  Score=35.39  Aligned_cols=116  Identities=16%  Similarity=0.125  Sum_probs=67.8

Q ss_pred             eeeeEEEeCCCCCEEEEEe--cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546          106 FEVSRISINRNGSALLLIG--SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS  183 (691)
Q Consensus       106 feI~~i~lSpsG~~LAl~G--~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT  183 (691)
                      ..+.+|.++|+|++|.+.+  ...|.|..+-.. +.. ...+  ..  +.        .......+.++|.+.--+|.-.
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~-g~~-~~~~--~~--~~--------~~~~~~~~~~~p~g~~l~v~~~  145 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKD-GIP-VAPI--QI--IE--------GLEGCHSANIDPDNRTLWVPCL  145 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCC-CCC-CCce--ee--cc--------CCCcccEeEeCCCCCEEEEeeC
Confidence            3578999999999999875  578888887421 110 0000  00  10        0112456778887655556666


Q ss_pred             cCCeEEEEeccCCCCCCc----EEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEec-CCcEEEE
Q 005546          184 SDSVFRLFNLASDVMQPE----QEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS-DGSIYIL  250 (691)
Q Consensus       184 sDn~iRlydl~~~~~~p~----q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~-~GDIYal  250 (691)
                      .++.|++|+++.... ..    ..+..   ..       +..+..+.|.++    .=.+|+.++ ++.|..+
T Consensus       146 ~~~~v~v~d~~~~g~-l~~~~~~~~~~---~~-------g~~p~~~~~~pd----g~~lyv~~~~~~~v~v~  202 (330)
T PRK11028        146 KEDRIRLFTLSDDGH-LVAQEPAEVTT---VE-------GAGPRHMVFHPN----QQYAYCVNELNSSVDVW  202 (330)
T ss_pred             CCCEEEEEEECCCCc-ccccCCCceec---CC-------CCCCceEEECCC----CCEEEEEecCCCEEEEE
Confidence            679999999975321 11    01111   01       233556777773    457888887 6666554

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=86.51  E-value=11  Score=46.28  Aligned_cols=126  Identities=21%  Similarity=0.252  Sum_probs=81.4

Q ss_pred             eeeEEEeCCCCCEEEEEe-----cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCC------
Q 005546          107 EVSRISINRNGSALLLIG-----SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS------  175 (691)
Q Consensus       107 eI~~i~lSpsG~~LAl~G-----~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s------  175 (691)
                      -++++.-||+|+|||...     .+.+.|++= +.|.        |...-||        +..++.-|+|||.=      
T Consensus       221 ~f~RlSWSPDG~~las~nA~n~~~~~~~IieR-~tWk--------~~~~LvG--------H~~p~evvrFnP~lfe~~~~  283 (942)
T KOG0973|consen  221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIER-GTWK--------VDKDLVG--------HSAPVEVVRFNPKLFERNNK  283 (942)
T ss_pred             eeeecccCCCcCeecchhhccCCcceeEEEec-CCce--------eeeeeec--------CCCceEEEEeChHHhccccc
Confidence            478999999999999863     345555532 1221        1112222        22356666677652      


Q ss_pred             ------C----CEEEEEecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCC
Q 005546          176 ------D----THLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDG  245 (691)
Q Consensus       176 ------d----s~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~G  245 (691)
                            .    .|+.+=.-|.+|-+|+..  ...|-  |..+        +.++..+++++.++    ++|+||+..-||
T Consensus       284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~--~~RPl--~vi~--------~lf~~SI~DmsWsp----dG~~LfacS~DG  347 (942)
T KOG0973|consen  284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTA--LPRPL--FVIH--------NLFNKSIVDMSWSP----DGFSLFACSLDG  347 (942)
T ss_pred             cCCccCCCcceEEEEEecCCccEEEEecC--CCCch--hhhh--------hhhcCceeeeeEcC----CCCeEEEEecCC
Confidence                  1    266677779999999974  34442  3332        34566799999999    699999999999


Q ss_pred             cEEEEcccCCC--CCCCChhHHH
Q 005546          246 SIYILCPVVPF--GSVYKWESIL  266 (691)
Q Consensus       246 DIYalcP~lP~--~~~~~~~~I~  266 (691)
                      .|+.+- |=+.  |-+++.+.+.
T Consensus       348 tV~~i~-Fee~ElG~~ls~ee~~  369 (942)
T KOG0973|consen  348 TVALIH-FEEKELGVALSEEEIS  369 (942)
T ss_pred             eEEEEE-cchHHhCcccChhhhc
Confidence            998873 3332  4456666665

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=86.46  E-value=54  Score=35.70  Aligned_cols=124  Identities=15%  Similarity=0.176  Sum_probs=75.0

Q ss_pred             ceeeeEEEeCCCCCEEEEE--ecCeEEEEEeCCCCCCCCCCceEEE--EEEe---cceeeeecCCccceEEEEEecCCCC
Q 005546          105 NFEVSRISINRNGSALLLI--GSDGLCVMYLYGRTCSSDNKTIICR--TVSV---GSQIYFSSSNVIRTLQVSWHPYSDT  177 (691)
Q Consensus       105 ~feI~~i~lSpsG~~LAl~--G~~~V~Vv~LP~~~~~~d~~~i~cr--t~~v---~~~~~~~s~~~~~I~qv~WHP~sds  177 (691)
                      .-...+|.++|+|++|.+.  +.-.|.|+.|... +     .+...  .+..   ++.  .........-++.|+|.+.-
T Consensus        86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~-g-----~l~~~~~~~~~~g~g~~--~~rq~~~h~H~v~~~pdg~~  157 (345)
T PF10282_consen   86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD-G-----SLGEVVQTVRHEGSGPN--PDRQEGPHPHQVVFSPDGRF  157 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-S-----EEEEEEEEEESEEEESS--TTTTSSTCEEEEEE-TTSSE
T ss_pred             CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC-c-----ccceeeeecccCCCCCc--ccccccccceeEEECCCCCE
Confidence            4467899999999999997  6778999999743 2     12111  1111   100  00112345678999998776


Q ss_pred             EEEEEecCCeEEEEeccCCCCCCc--EEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEec-CCcEEEE
Q 005546          178 HLGILSSDSVFRLFNLASDVMQPE--QEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS-DGSIYIL  250 (691)
Q Consensus       178 ~LvVLTsDn~iRlydl~~~~~~p~--q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~-~GDIYal  250 (691)
                      -+|+-.-.+.|++|+++....+..  ..+.+.   +       +.-+-.+.|.++    .--+|++.+ ++.|..+
T Consensus       158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~---~-------G~GPRh~~f~pd----g~~~Yv~~e~s~~v~v~  219 (345)
T PF10282_consen  158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP---P-------GSGPRHLAFSPD----GKYAYVVNELSNTVSVF  219 (345)
T ss_dssp             EEEEETTTTEEEEEEE-TTS-TEEEEEEEECS---T-------TSSEEEEEE-TT----SSEEEEEETTTTEEEEE
T ss_pred             EEEEecCCCEEEEEEEeCCCceEEEeeccccc---c-------CCCCcEEEEcCC----cCEEEEecCCCCcEEEE
Confidence            677777778999999986543322  222221   1       334777888884    556888876 4556655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=86.07  E-value=29  Score=39.34  Aligned_cols=109  Identities=17%  Similarity=0.268  Sum_probs=75.3

Q ss_pred             CceEEEEeC-CCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEec--CeE
Q 005546           52 PKNLVAWDG-ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS--DGL  128 (691)
Q Consensus        52 ~rnlla~~g-~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~--~~V  128 (691)
                      -||+||.-+ +.-+.+||=+.+                    .+-+++.-   -.-+|..+..+|.---..|.|+  .+|
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g--------------------~p~~s~~~---~~k~Vq~l~wh~~~p~~LLsGs~D~~V  311 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTG--------------------KPKSSITH---HGKKVQTLEWHPYEPSVLLSGSYDGTV  311 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCC--------------------Ccceehhh---cCCceeEEEecCCCceEEEeccccceE
Confidence            788888754 778888866541                    12233431   1347888889998888888888  567


Q ss_pred             EEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 005546          129 CVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPE  201 (691)
Q Consensus       129 ~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~  201 (691)
                      .+..+....    ..   -+.++++          ..|-++.|+|.+..+.++=|.|+++|=||+.. ..+|.
T Consensus       312 ~l~D~R~~~----~s---~~~wk~~----------g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~-~~~~v  366 (463)
T KOG0270|consen  312 ALKDCRDPS----NS---GKEWKFD----------GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN-PGKPV  366 (463)
T ss_pred             EeeeccCcc----cc---CceEEec----------cceEEEEecCCCceeEEEecCCceEEeeecCC-CCCce
Confidence            776665321    11   2234333          36899999999999999999999999999974 44563

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=85.83  E-value=6.6  Score=43.70  Aligned_cols=103  Identities=18%  Similarity=0.322  Sum_probs=62.4

Q ss_pred             CceEEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCC-ceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEE
Q 005546           52 PKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFP-SKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCV  130 (691)
Q Consensus        52 ~rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~-yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~V  130 (691)
                      +-++....++..+|+|++.+.                   ..+ -|+.. .   .-.|.++.+||+|+|+|-..=. =. 
T Consensus       336 ~erlVSgsDd~tlflW~p~~~-------------------kkpi~rmtg-H---q~lVn~V~fSPd~r~IASaSFD-kS-  390 (480)
T KOG0271|consen  336 GERLVSGSDDFTLFLWNPFKS-------------------KKPITRMTG-H---QALVNHVSFSPDGRYIASASFD-KS-  390 (480)
T ss_pred             cceeEEecCCceEEEeccccc-------------------ccchhhhhc-h---hhheeeEEECCCccEEEEeecc-cc-
Confidence            456777777899999988751                   111 22222 1   1358899999999999865322 22 


Q ss_pred             EEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe-cCCeEEEEeccC
Q 005546          131 MYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS-SDSVFRLFNLAS  195 (691)
Q Consensus       131 v~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT-sDn~iRlydl~~  195 (691)
                      |.|   |...++..+  .++       .  ..-..|-||.|-  .|+-|+|=. .|.+|++|++..
T Consensus       391 VkL---W~g~tGk~l--asf-------R--GHv~~VYqvaws--aDsRLlVS~SkDsTLKvw~V~t  440 (480)
T KOG0271|consen  391 VKL---WDGRTGKFL--ASF-------R--GHVAAVYQVAWS--ADSRLLVSGSKDSTLKVWDVRT  440 (480)
T ss_pred             eee---eeCCCcchh--hhh-------h--hccceeEEEEec--cCccEEEEcCCCceEEEEEeee
Confidence            123   322122211  011       1  133468999994  366666654 589999999974

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=85.70  E-value=13  Score=43.98  Aligned_cols=150  Identities=19%  Similarity=0.272  Sum_probs=75.9

Q ss_pred             CceEEEEeC-CCeEEEEECCcce--E-EEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEecCe
Q 005546           52 PKNLVAWDG-ASRLYYWDQNAQC--L-HRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDG  127 (691)
Q Consensus        52 ~rnlla~~g-~~~Lfvw~~n~~~--l-~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~  127 (691)
                      -+++.|.-| +.+||+||=|..-  + ..-|.             .....+... | ...|..+.+|++|+.++--|..+
T Consensus       129 ~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~-------------~t~~sl~sG-~-k~siYSLA~N~t~t~ivsGgtek  193 (735)
T KOG0308|consen  129 NNELVASGGLDRKIFLWDINTGTATLVASFNN-------------VTVNSLGSG-P-KDSIYSLAMNQTGTIIVSGGTEK  193 (735)
T ss_pred             CceeEEecCCCccEEEEEccCcchhhhhhccc-------------cccccCCCC-C-ccceeeeecCCcceEEEecCccc
Confidence            345666555 8999999887531  1 11110             011122212 3 24799999999995555445555


Q ss_pred             EEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEcc
Q 005546          128 LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQ  207 (691)
Q Consensus       128 V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~  207 (691)
                      +-.+-=|+. .   ...+     .|-.   ++  .  .|+-++-.+. ++.++--.||++||+|||.  ......++.++
T Consensus       194 ~lr~wDprt-~---~kim-----kLrG---HT--d--NVr~ll~~dD-Gt~~ls~sSDgtIrlWdLg--qQrCl~T~~vH  254 (735)
T KOG0308|consen  194 DLRLWDPRT-C---KKIM-----KLRG---HT--D--NVRVLLVNDD-GTRLLSASSDGTIRLWDLG--QQRCLATYIVH  254 (735)
T ss_pred             ceEEecccc-c---ccee-----eeec---cc--c--ceEEEEEcCC-CCeEeecCCCceEEeeecc--ccceeeeEEec
Confidence            444322211 1   1122     2211   11  1  2333322222 4567777899999999995  34444455553


Q ss_pred             cCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEE
Q 005546          208 PVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL  250 (691)
Q Consensus       208 ~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYal  250 (691)
                      .  .|         +=+..-.+    +.=.+|.-.++|.||.-
T Consensus       255 ~--e~---------VWaL~~~~----sf~~vYsG~rd~~i~~T  282 (735)
T KOG0308|consen  255 K--EG---------VWALQSSP----SFTHVYSGGRDGNIYRT  282 (735)
T ss_pred             c--Cc---------eEEEeeCC----CcceEEecCCCCcEEec
Confidence            2  11         11222112    23346666788888865

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=85.63  E-value=22  Score=37.85  Aligned_cols=98  Identities=16%  Similarity=0.198  Sum_probs=68.0

Q ss_pred             CCceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCC-------------------------CCCCCceEE
Q 005546           93 FPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTC-------------------------SSDNKTIIC  147 (691)
Q Consensus        93 ~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~-------------------------~~d~~~i~c  147 (691)
                      ..|+++.-  + +-+|..|.+.|++++||..|...|.+-+|.....                         +..++.-.|
T Consensus        31 ~C~rTiqh--~-dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~  107 (311)
T KOG0315|consen   31 ICSRTIQH--P-DSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTV  107 (311)
T ss_pred             eEEEEEec--C-ccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceE
Confidence            45777763  2 5689999999999999999999999988854321                         001122235


Q ss_pred             EEEEecc---eeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCC
Q 005546          148 RTVSVGS---QIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASD  196 (691)
Q Consensus       148 rt~~v~~---~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~  196 (691)
                      |.+.+..   +..|.  ..++|-.|.-||- .++|.+=+.++.||+||+..+
T Consensus       108 kIWdlR~~~~qR~~~--~~spVn~vvlhpn-QteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen  108 KIWDLRSLSCQRNYQ--HNSPVNTVVLHPN-QTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             EEEeccCcccchhcc--CCCCcceEEecCC-cceEEeecCCCcEEEEEccCC
Confidence            5554421   22222  3367889999986 468888899999999999754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=85.46  E-value=7.5  Score=43.85  Aligned_cols=116  Identities=17%  Similarity=0.225  Sum_probs=73.3

Q ss_pred             CCceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEE
Q 005546          103 KLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL  182 (691)
Q Consensus       103 pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVL  182 (691)
                      +..-.|+.+.++|+|.|+.-...++.-....-.     ++..+ |  .--++      .+...+-.+.+||.|- -++.=
T Consensus       301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~-----~g~~l-t--~vs~~------~s~v~~ts~~fHpDgL-ifgtg  365 (506)
T KOG0289|consen  301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS-----SGSQL-T--VVSDE------TSDVEYTSAAFHPDGL-IFGTG  365 (506)
T ss_pred             cccccceeeeeccCCcEEEEecCCceEEEEEcc-----CCcEE-E--EEeec------cccceeEEeeEcCCce-EEecc
Confidence            345678899999999999988877665544321     12111 2  21111      2456789999999872 34455


Q ss_pred             ecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEE
Q 005546          183 SSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL  250 (691)
Q Consensus       183 TsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYal  250 (691)
                      |.|+++++||++.....    -.+        .+- .-.+.++.|+-    .+|-|-+...||.|...
T Consensus       366 t~d~~vkiwdlks~~~~----a~F--------pgh-t~~vk~i~FsE----NGY~Lat~add~~V~lw  416 (506)
T KOG0289|consen  366 TPDGVVKIWDLKSQTNV----AKF--------PGH-TGPVKAISFSE----NGYWLATAADDGSVKLW  416 (506)
T ss_pred             CCCceEEEEEcCCcccc----ccC--------CCC-CCceeEEEecc----CceEEEEEecCCeEEEE
Confidence            78999999999742110    111        111 22578899998    46667777788876654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=85.37  E-value=5.4  Score=45.22  Aligned_cols=124  Identities=23%  Similarity=0.386  Sum_probs=76.4

Q ss_pred             CceEEEEeCCCeEEEEECCc-ceEEEE---------Eee------cCC--CCC--------Cccc---cCCCceEEecCC
Q 005546           52 PKNLVAWDGASRLYYWDQNA-QCLHRI---------SVR------LGE--PDP--------TSIL---AAFPSKVMRADV  102 (691)
Q Consensus        52 ~rnlla~~g~~~Lfvw~~n~-~~l~~~---------~lR------~~~--~~~--------~~~~---~~~~yk~L~~~~  102 (691)
                      .+.++++.+.+++|+||=+. .|+++-         .+-      +..  .+.        .+..   +..+-+.+.   
T Consensus       356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d---  432 (514)
T KOG2055|consen  356 SKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD---  432 (514)
T ss_pred             CcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh---
Confidence            58899998899999998775 455422         111      000  000        0001   111222222   


Q ss_pred             CCceeeeEEEeCCCCCEEEEEec---CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecC-CccceEEEEEecCCCCE
Q 005546          103 KLNFEVSRISINRNGSALLLIGS---DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSS-NVIRTLQVSWHPYSDTH  178 (691)
Q Consensus       103 pl~feI~~i~lSpsG~~LAl~G~---~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~-~~~~I~qv~WHP~sds~  178 (691)
                      .|.+.|..|.+|+++..||++..   ..+-.|.+|.-.-...               |..++ +-..|..+.|-|.| +.
T Consensus       433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsN---------------fP~~n~~vg~vtc~aFSP~s-G~  496 (514)
T KOG2055|consen  433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSN---------------FPTSNTKVGHVTCMAFSPNS-GY  496 (514)
T ss_pred             hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeecc---------------CCCCCCcccceEEEEecCCC-ce
Confidence            34678999999999999999865   5888999993321111               11111 22346777777754 46


Q ss_pred             EEEEecCCeEEEEecc
Q 005546          179 LGILSSDSVFRLFNLA  194 (691)
Q Consensus       179 LvVLTsDn~iRlydl~  194 (691)
                      |.|=+.++.+++|.|.
T Consensus       497 lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  497 LAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EEeecCCCceeeEeec
Confidence            7788899999999874

>PLN00181 protein SPA1-RELATED; Provisional

Probab=84.99  E-value=68  Score=39.05  Aligned_cols=125  Identities=16%  Similarity=0.135  Sum_probs=71.2

Q ss_pred             eeeEEEeCCCCCEEEEEe-cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecC
Q 005546          107 EVSRISINRNGSALLLIG-SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD  185 (691)
Q Consensus       107 eI~~i~lSpsG~~LAl~G-~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsD  185 (691)
                      .|..+.++ +|.+++..| +..|.|-.+...........+  +++  .       .....+..+.|.|.+ ..|++-..|
T Consensus       663 ~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l--~~~--~-------gh~~~i~~v~~s~~~-~~lasgs~D  729 (793)
T PLN00181        663 TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL--HSF--M-------GHTNVKNFVGLSVSD-GYIATGSET  729 (793)
T ss_pred             CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce--EEE--c-------CCCCCeeEEEEcCCC-CEEEEEeCC
Confidence            56777776 455655544 457888887633111111111  111  1       122346677888874 688888999


Q ss_pred             CeEEEEeccCCCCCCcEEEEcccCC--CCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEE
Q 005546          186 SVFRLFNLASDVMQPEQEYYLQPVE--PGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL  250 (691)
Q Consensus       186 n~iRlydl~~~~~~p~q~~~L~~~~--~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYal  250 (691)
                      +.+++|+....  .|...+.+....  .+......+..+.++||.+.    .-.|.....+|.|..+
T Consensus       730 ~~v~iw~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~----~~~lva~~~dG~I~i~  790 (793)
T PLN00181        730 NEVFVYHKAFP--MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ----SSTLVAANSTGNIKIL  790 (793)
T ss_pred             CEEEEEECCCC--CceEEEecccCCcccccccCCCCcEEEEEEEcCC----CCeEEEecCCCcEEEE
Confidence            99999997632  233333332110  11111112345889999884    4467777889988764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=84.51  E-value=15  Score=39.12  Aligned_cols=88  Identities=15%  Similarity=0.211  Sum_probs=60.1

Q ss_pred             CceEEecCCCCceeeeEEEeCCCCCEEEEEecC-eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEe
Q 005546           94 PSKVMRADVKLNFEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWH  172 (691)
Q Consensus        94 ~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WH  172 (691)
                      .-+.|.+++  +-.|+.+.+-|+|+.|+-++++ .+.|=+|+.....   ..+.    ++. + |  .-.+.-|.+++.-
T Consensus       158 c~~~liPe~--~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~---s~l~----P~~-k-~--~ah~~~il~C~lS  224 (311)
T KOG0315|consen  158 CTHELIPED--DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA---SELE----PVH-K-F--QAHNGHILRCLLS  224 (311)
T ss_pred             cccccCCCC--CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc---ccce----Ehh-h-e--ecccceEEEEEEC
Confidence            345565543  4579999999999999998887 5677788753222   1221    221 1 1  1223458888877


Q ss_pred             cCCCCEEEEEecCCeEEEEeccC
Q 005546          173 PYSDTHLGILSSDSVFRLFNLAS  195 (691)
Q Consensus       173 P~sds~LvVLTsDn~iRlydl~~  195 (691)
                      |.+ .+|++-.+|.++++|+++.
T Consensus       225 Pd~-k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  225 PDV-KYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             CCC-cEEEeecCCceEEEEecCC
Confidence            753 6899999999999999973

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.03  E-value=55  Score=35.08  Aligned_cols=39  Identities=18%  Similarity=0.179  Sum_probs=33.2

Q ss_pred             CccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 005546          162 NVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPE  201 (691)
Q Consensus       162 ~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~  201 (691)
                      .+..|.|+.|||....++.--..|+++|+||+.. ..++.
T Consensus       146 h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~-~gk~~  184 (311)
T KOG0277|consen  146 HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS-PGKFM  184 (311)
T ss_pred             CccEEEEEecCCCCCCeEEEccCCceEEEEEecC-CCcee
Confidence            4568999999999999999999999999999874 44443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=82.56  E-value=4.1  Score=42.03  Aligned_cols=73  Identities=16%  Similarity=0.221  Sum_probs=45.7

Q ss_pred             CCEEEEEecCCeEEEEeccCCCCCCcEEEEcccCCCC-C-CCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEEccc
Q 005546          176 DTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPG-R-YRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPV  253 (691)
Q Consensus       176 ds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g-~-s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYalcP~  253 (691)
                      +.+|++||+++.+++||+..... .-....+.|.... . ........++++.+..    .+..| |.++||+.|+..+-
T Consensus        22 ~~~Ll~iT~~G~l~vWnl~~~k~-~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~----~G~Pi-V~lsng~~y~y~~~   95 (219)
T PF07569_consen   22 GSYLLAITSSGLLYVWNLKKGKA-VLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS----NGVPI-VTLSNGDSYSYSPD   95 (219)
T ss_pred             CCEEEEEeCCCeEEEEECCCCee-ccCCccHHHHhcccccccCCCCCcEEEEEEcC----CCCEE-EEEeCCCEEEeccc
Confidence            78899999999999999985321 1111223221110 0 0002345778888875    34554 56678999999987


Q ss_pred             C
Q 005546          254 V  254 (691)
Q Consensus       254 l  254 (691)
                      |
T Consensus        96 L   96 (219)
T PF07569_consen   96 L   96 (219)
T ss_pred             c
Confidence            6

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=80.45  E-value=16  Score=43.60  Aligned_cols=147  Identities=14%  Similarity=0.191  Sum_probs=90.0

Q ss_pred             EEEECCcceEEEEEe---ecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCC
Q 005546           65 YYWDQNAQCLHRISV---RLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSS  140 (691)
Q Consensus        65 fvw~~n~~~l~~~~l---R~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~  140 (691)
                      +.|+.|+..|++..-   -.-...+.    ...++.....-  ..+|+.+-+.|++.+|.-++. .-+.|..||..  . 
T Consensus        25 ~~~s~nG~~L~t~~~d~Vi~idv~t~----~~~l~s~~~ed--~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tg--k-   95 (775)
T KOG0319|consen   25 VAWSSNGQHLYTACGDRVIIIDVATG----SIALPSGSNED--EDEITALALTPDEEVLVTASRSQLLRVWSLPTG--K-   95 (775)
T ss_pred             eeECCCCCEEEEecCceEEEEEccCC----ceecccCCccc--hhhhheeeecCCccEEEEeeccceEEEEEcccc--h-
Confidence            888888877774411   11111111    11134443322  247889999999988877655 56788888833  1 


Q ss_pred             CCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCC
Q 005546          141 DNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASI  220 (691)
Q Consensus       141 d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~  220 (691)
                           .-|++..        ....+|.-+.++|.+ .-|.+--.|+.+|+||+....  .  +..|.    |     .+-
T Consensus        96 -----~irswKa--------~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~--~--th~fk----G-----~gG  148 (775)
T KOG0319|consen   96 -----LIRSWKA--------IHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGY--C--THSFK----G-----HGG  148 (775)
T ss_pred             -----HhHhHhh--------ccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCE--E--EEEec----C-----CCc
Confidence                 1233322        134579999999999 667788899999999997421  1  23332    1     133


Q ss_pred             ceEEEEecCCCCCCceEEEEEecCCcEEE
Q 005546          221 CPVDFSFGGDHLWDRFSVFVLFSDGSIYI  249 (691)
Q Consensus       221 ~avsf~FG~~~~W~~~TLyiL~~~GDIYa  249 (691)
                      .+-+++|+|  .|..+=|+.=..||-|++
T Consensus       149 vVssl~F~~--~~~~~lL~sg~~D~~v~v  175 (775)
T KOG0319|consen  149 VVSSLLFHP--HWNRWLLASGATDGTVRV  175 (775)
T ss_pred             eEEEEEeCC--ccchhheeecCCCceEEE
Confidence            588999999  455544444445666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	691
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	3e-25

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A Length = 452

 Score =  108 bits (271), Expect = 3e-25
 Identities = 52/373 (13%), Positives = 109/373 (29%), Gaps = 43/373 (11%)

Query: 28  PLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPT 87
            L   P+F A           + +P+ + +    +R+ +   N        +R       
Sbjct: 6   RLSALPIFQASL-------SASQSPRYIFSSQNGTRIVFIQDN-------IIRW-----Y 46

Query: 88  SILAAFPSKVMRADVKLNFE-VSRISINRNGSALLLIGSDGLCVMYLYGR--TCSSDNKT 144
           ++L       +     L  +    +  + +G  L L   + + VM +          +  
Sbjct: 47  NVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQ 106

Query: 145 IICRTVSVGSQIYFSSSNVIRTLQVSWHPYS--DTHLGILSSDSVFRLFNLASDVMQPEQ 202
              +                   +V +HP S  D+ + +L  D    +F++ +   +   
Sbjct: 107 DAFQIFHYSID-EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS-QEKPI 164

Query: 203 EYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKW 262
                    G       I  ++FS  G  L+           G I+   P +P   +   
Sbjct: 165 VLNKPNNSFGLDARVNDITDLEFSKDGLTLY----CLNTTEGGDIFAFYPFLPSVLLLNE 220

Query: 263 ESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPALKAHPHAL 322
           + +  I N +        ++  V      I  L+             G     K +    
Sbjct: 221 KDLNLILNKSLVMYESLDSTTDVIVKRNVIKQLQFVSKLHENWNSRFGKVDIQKEY---- 276

Query: 323 FDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQID 382
                 +QGP   I     +        +     ++ +     ++ IV  S+  G L + 
Sbjct: 277 --RLAKVQGPFT-INPFPGELY------DYTATNIATILIDNGQNEIVCVSFDDGSLILL 327

Query: 383 ALADEIQPVWTVN 395
               E+   W V+
Sbjct: 328 FKDLEMSMSWDVD 340

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	691
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.35
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.17
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.64
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.52
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.61
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.35
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	94.88
d1tbga_	340	beta1-subunit of the signal-transducing G protein	94.84
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	94.11
d1tbga_	340	beta1-subunit of the signal-transducing G protein	93.81
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	93.37
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	93.02
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	92.87
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	92.85
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	92.17
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	89.15
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	87.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	80.92

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.35  E-value=0.0032  Score=34.35  Aligned_cols=154  Identities=10%  Similarity=0.112  Sum_probs=85.5

Q ss_pred             CCCEEE--EEECCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEEC-CE
Q ss_conf             970289--995997599998896159999753189999752247884487348777312548996999998999926-83
Q 005546           51 APKNLV--AWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS-DG  127 (691)
Q Consensus        51 ~~rnll--a~~g~~~Lfvw~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pi~feI~qi~iSpsG~~LAl~G~-~~  127 (691)
                      ...|++  +.++++.+.+||....                    ..-+.+.    ....+..+.+||+|+++++.+. ..
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~--------------------~v~~~~~----~g~~~~~v~fSpDG~~l~~~s~dg~   84 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTY--------------------EIKTVLD----TGYAVHISRLSASGRYLFVIGRDGK   84 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTC--------------------CEEEEEE----CSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCC--------------------CEEEEEE----CCCCEEEEEECCCCCEEEEECCCCC
T ss_conf             878289999769997999989998--------------------3999973----7997137998899999999828999


Q ss_pred             EEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCC--C-CEE-EEEECCCEEEEEECCCCCCCCCEE
Q ss_conf             999995899888899712777999545345403784114899996189--9-779-999249848999546899997279
Q 005546          128 LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS--D-THL-GILSSDSVFRLFNLASDVMQPEQE  203 (691)
Q Consensus       128 V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s--d-s~L-vVLTsDn~iRlydl~~~~~~p~q~  203 (691)
                      |.+..+...     + ...-..++.+.          .-..+.|.|..  | .+| |.-..|+.+++||..  ..++...
T Consensus        85 v~~~d~~t~-----~-~~~~~~i~~~~----------~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~--t~~~~~~  146 (432)
T d1qksa2          85 VNMIDLWMK-----E-PTTVAEIKIGS----------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE--TLEPKKI  146 (432)
T ss_dssp             EEEEETTSS-----S-CCEEEEEECCS----------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT--TCCEEEE
T ss_pred             EEEEEEECC-----C-CEEEEEEECCC----------CCCCEEEECCCCCCCCEEEEECCCCCEEEEEECC--CCCCEEE
T ss_conf             789981089-----8-12889984488----------9877698432188888899981789827999076--5542254


Q ss_pred             EECCCCCC-CCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEE
Q ss_conf             98244899-887999997317998017999983599999138829997
Q 005546          204 YYLQPVEP-GRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL  250 (691)
Q Consensus       204 ~~L~~~~~-g~s~~~s~~~avsF~FG~~~~W~~lTLyiL~~~GDIYal  250 (691)
                      +....... ...+.. +....+..|.++   +..-++.+..+|.|+.+
T Consensus       147 ~~~~~~~~~~~~~~~-~~~~~~v~~s~d---g~~~~vs~~~~~~i~~~  190 (432)
T d1qksa2         147 QSTRGMTYDEQEYHP-EPRVAAILASHY---RPEFIVNVKETGKILLV  190 (432)
T ss_dssp             EECCEECTTTCCEES-CCCEEEEEECSS---SSEEEEEETTTTEEEEE
T ss_pred             ECCCCCCCCCEECCC-CCCEEEEEECCC---CCEEEEEECCCCEEEEE
T ss_conf             024776435220168-885058998789---99899998168829999

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.17  E-value=0.005  Score=33.20  Aligned_cols=118  Identities=14%  Similarity=0.097  Sum_probs=66.0

Q ss_pred             EEEEEEEECCCCCEEEEEECC-EEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEEEEEC
Q ss_conf             125489969999989999268-3999995899888899712777999545345403784114899996189977999924
Q 005546          106 FEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS  184 (691)
Q Consensus       106 feI~qi~iSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs  184 (691)
                      ..|..|.+||+|++|+..|.. .|.|-.+...       ...+ ...+       ......|..+.|+|.+ ..|++-..
T Consensus        52 ~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~-------~~~~-~~~~-------~~~~~~v~~i~~~p~~-~~l~~~s~  115 (371)
T d1k8kc_          52 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-------TWKP-TLVI-------LRINRAARCVRWAPNE-KKFAVGSG  115 (371)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETT-------EEEE-EEEC-------CCCSSCEEEEEECTTS-SEEEEEET
T ss_pred             CCEEEEEECCCCCEEEEEECCCEEEEEEECCC-------CCCC-CCCC-------CCCCCCCCCCCCCCCC-CCCEEECC
T ss_conf             98889999799999999979993999862033-------2110-0122-------3221100011111112-11000002


Q ss_pred             CCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEECC
Q ss_conf             98489995468999972799824489988799999731799801799998359999913882999755
Q 005546          185 DSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP  252 (691)
Q Consensus       185 Dn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsF~FG~~~~W~~lTLyiL~~~GDIYalcP  252 (691)
                      |+++++|++.......  .....  .     ......+.+.+|.|.    .-.|.....||.|.....
T Consensus       116 d~~i~i~~~~~~~~~~--~~~~~--~-----~~~~~~v~~v~~~p~----~~~l~s~s~D~~v~v~~~  170 (371)
T d1k8kc_         116 SRVISICYFEQENDWW--VCKHI--K-----KPIRSTVLSLDWHPN----SVLLAAGSCDFKCRIFSA  170 (371)
T ss_dssp             TSSEEEEEEETTTTEE--EEEEE--C-----TTCCSCEEEEEECTT----SSEEEEEETTSCEEEEEC
T ss_pred             CCCCEEEEEECCCCCC--CCCCC--C-----CCCCCCCCCCCCCCC----CCCEECCCCCCEEEEEEE
T ss_conf             5763025442033433--11100--1-----011122211111111----111000134767999840

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.014  Score=30.50  Aligned_cols=117  Identities=15%  Similarity=0.119  Sum_probs=61.7

Q ss_pred             EEEEEEEECCCCCEEEEEECCEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEEEEECC
Q ss_conf             12548996999998999926839999958998888997127779995453454037841148999961899779999249
Q 005546          106 FEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD  185 (691)
Q Consensus       106 feI~qi~iSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsD  185 (691)
                      ..|..+.+||+|.+||..++..|.|-.+....   ....+ . ..       ........|..+.|+|.+ ..|++-..|
T Consensus        52 ~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~---~~~~~-~-~~-------~~~~h~~~I~~v~~s~dg-~~l~s~~~d  118 (337)
T d1gxra_          52 EVVCAVTISNPTRHVYTGGKGCVKVWDISHPG---NKSPV-S-QL-------DCLNRDNYIRSCKLLPDG-CTLIVGGEA  118 (337)
T ss_dssp             SCCCEEEECSSSSEEEEECBSEEEEEETTSTT---CCSCS-E-EE-------ECSCTTSBEEEEEECTTS-SEEEEEESS
T ss_pred             CCEEEEEECCCCCEEEEEECCEEEEEECCCCC---CCCEE-E-EE-------EECCCCCCEEEEEECCCC-CEEEEEECC
T ss_conf             92899999899999999979988997736776---33116-8-76-------404889968999986799-889886123


Q ss_pred             CEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEE
Q ss_conf             84899954689999727998244899887999997317998017999983599999138829997
Q 005546          186 SVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL  250 (691)
Q Consensus       186 n~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsF~FG~~~~W~~lTLyiL~~~GDIYal  250 (691)
                      +.|++||+....  +.....+..         ....+..++|.+.    ...+.....++.|+..
T Consensus       119 g~i~iwd~~~~~--~~~~~~~~~---------~~~~v~~~~~~~~----~~~l~s~~~d~~i~~~  168 (337)
T d1gxra_         119 STLSIWDLAAPT--PRIKAELTS---------SAPACYALAISPD----SKVCFSCCSDGNIAVW  168 (337)
T ss_dssp             SEEEEEECCCC----EEEEEEEC---------SSSCEEEEEECTT----SSEEEEEETTSCEEEE
T ss_pred             CCCCCCCCCCCC--CCCCCCCCC---------CCCCCCCCCCCCC----CCCCCCCCCCCCCCCC
T ss_conf             321111111111--111111111---------1111111111111----1111111111111111

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.52  E-value=0.017  Score=30.03  Aligned_cols=114  Identities=11%  Similarity=0.122  Sum_probs=61.6

Q ss_pred             CEEEEEEEECCCCCEEEEEECC-EEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEEEEE
Q ss_conf             3125489969999989999268-399999589988889971277799954534540378411489999618997799992
Q 005546          105 NFEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS  183 (691)
Q Consensus       105 ~feI~qi~iSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT  183 (691)
                      ...|..+.++|+|++||..+.. .|.|-.+...      .......+.         .....|..+.|+|.+ ..|++..
T Consensus        58 ~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~------~~~~~~~~~---------~~~~~v~~v~~s~d~-~~l~~~~  121 (311)
T d1nr0a1          58 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT------THILKTTIP---------VFSGPVKDISWDSES-KRIAAVG  121 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEESSST------TCCEEEEEE---------CSSSCEEEEEECTTS-CEEEEEE
T ss_pred             CCCEEEEEEECCCCEEECCCCCCEEEEEEEECC------CCCCCCCCC---------CCCCCCCCCCCCCCC-CCCCCCC
T ss_conf             888899999489996722556736746631011------110000134---------335754332333111-0001111


Q ss_pred             C--CCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEE
Q ss_conf             4--984899954689999727998244899887999997317998017999983599999138829997
Q 005546          184 S--DSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL  250 (691)
Q Consensus       184 s--Dn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsF~FG~~~~W~~lTLyiL~~~GDIYal  250 (691)
                      +  |..+++|++...  ++.+.  +.         .....+.+.+|.+.   +.+.+..-..||.|+..
T Consensus       122 ~~~~~~~~v~~~~~~--~~~~~--l~---------~h~~~v~~v~~~~~---~~~~l~sgs~d~~i~i~  174 (311)
T d1nr0a1         122 EGRERFGHVFLFDTG--TSNGN--LT---------GQARAMNSVDFKPS---RPFRIISGSDDNTVAIF  174 (311)
T ss_dssp             CCSSCSEEEEETTTC--CBCBC--CC---------CCSSCEEEEEECSS---SSCEEEEEETTSCEEEE
T ss_pred             CCCCCCCCCCCCCCC--CCCCC--CC---------CCCCCCCCCCCCCC---CEEEECCCCCCCCCCCC
T ss_conf             221111111111111--11111--11---------11111111111211---10120001122111111

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.61  E-value=0.048  Score=27.40  Aligned_cols=108  Identities=14%  Similarity=0.145  Sum_probs=63.2

Q ss_pred             CCEEE--EEECCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEEC-CEE
Q ss_conf             70289--995997599998896159999753189999752247884487348777312548996999998999926-839
Q 005546           52 PKNLV--AWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS-DGL  128 (691)
Q Consensus        52 ~rnll--a~~g~~~Lfvw~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pi~feI~qi~iSpsG~~LAl~G~-~~V  128 (691)
                      +++++  +.++++.+.+||....                    ..-+.+..    ...+..+.+||+|+++++.+. .+|
T Consensus        30 ~~~~~~V~~~~dg~v~vwD~~t~--------------------~~~~~l~~----g~~~~~vafSPDGk~l~~~~~d~~v   85 (426)
T d1hzua2          30 LPNLFSVTLRDAGQIALVDGDSK--------------------KIVKVIDT----GYAVHISRMSASGRYLLVIGRDARI   85 (426)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTC--------------------SEEEEEEC----CSSEEEEEECTTSCEEEEEETTSEE
T ss_pred             CCEEEEEEECCCCEEEEEECCCC--------------------CEEEEEEC----CCCEEEEEECCCCCEEEEEECCCCE
T ss_conf             87089999759997999999999--------------------59999968----9980389998999999999589988


Q ss_pred             EEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf             9999589988889971277799954534540378411489999618997799992498489995468
Q 005546          129 CVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS  195 (691)
Q Consensus       129 ~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~  195 (691)
                      .|..+-..  .    ...-..++.+..      +..-+..+.|+|.+..-++.-..|+.+++||...
T Consensus        86 ~vwd~~t~--~----~~~~~~i~~~~~------~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2          86 DMIDLWAK--E----PTKVAEIKIGIE------ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             EEEETTSS--S----CEEEEEEECCSE------EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             EEEECCCC--C----EEEEEEEECCCC------CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCC
T ss_conf             99975688--6----048999867888------7645885002688987999635897699985776

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.35  E-value=0.058  Score=26.87  Aligned_cols=114  Identities=10%  Similarity=0.065  Sum_probs=71.1

Q ss_pred             EEEEEEECCCCCEEEEEECC-EEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEEEEECC
Q ss_conf             25489969999989999268-39999958998888997127779995453454037841148999961899779999249
Q 005546          107 EVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD  185 (691)
Q Consensus       107 eI~qi~iSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsD  185 (691)
                      +|..+..||+|++||..+.. .|.|-.+-       .....+. ..+       ......|..+.|+|.+ ..|++-..|
T Consensus         9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~-------~~~~~~~-~~l-------~gH~~~V~~l~fsp~~-~~l~s~s~D   72 (371)
T d1k8kc_           9 PISCHAWNKDRTQIAICPNNHEVHIYEKS-------GNKWVQV-HEL-------KEHNGQVTGVDWAPDS-NRIVTCGTD   72 (371)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEE-------TTEEEEE-EEE-------ECCSSCEEEEEEETTT-TEEEEEETT
T ss_pred             CEEEEEECCCCCEEEEEECCCEEEEEECC-------CCCEEEE-EEE-------CCCCCCEEEEEECCCC-CEEEEEECC
T ss_conf             83899998999999999488989999888-------9978999-995-------5889988899997999-999999799


Q ss_pred             CEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             848999546899997279982448998879999973179980179999835999991388299975
Q 005546          186 SVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILC  251 (691)
Q Consensus       186 n~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsF~FG~~~~W~~lTLyiL~~~GDIYalc  251 (691)
                      +++|+||+....  ..+.+.+..         ....+.+.+|.|.    .-.+++...+|.|....
T Consensus        73 ~~i~vWd~~~~~--~~~~~~~~~---------~~~~v~~i~~~p~----~~~l~~~s~d~~i~i~~  123 (371)
T d1k8kc_          73 RNAYVWTLKGRT--WKPTLVILR---------INRAARCVRWAPN----EKKFAVGSGSRVISICY  123 (371)
T ss_dssp             SCEEEEEEETTE--EEEEEECCC---------CSSCEEEEEECTT----SSEEEEEETTSSEEEEE
T ss_pred             CEEEEEEECCCC--CCCCCCCCC---------CCCCCCCCCCCCC----CCCCEEECCCCCCEEEE
T ss_conf             939998620332--110012232---------2110001111111----21100000257630254

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.88  E-value=0.081  Score=26.04  Aligned_cols=78  Identities=12%  Similarity=0.084  Sum_probs=48.3

Q ss_pred             EEEEEEECCCCCEEEEEECCEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCC-CCEEEEEECC
Q ss_conf             254899699999899992683999995899888899712777999545345403784114899996189-9779999249
Q 005546          107 EVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS-DTHLGILSSD  185 (691)
Q Consensus       107 eI~qi~iSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s-ds~LvVLTsD  185 (691)
                      .+..+..+|+|+.+|....+.+.|..+......  ...+  ..        +..+....|..+.|+|.. +..|+.-..|
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~--~~~~--~~--------~~gh~~~~v~~v~fsP~~~g~~lasgs~D   86 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK--VPPV--VQ--------FTGHGSSVVTTVKFSPIKGSQYLCSGDES   86 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCS--SCSE--EE--------ECTTTTSCEEEEEECSSTTCCEEEEEETT
T ss_pred             CEEEEEECCCCCEEEEEECCCEEEEEEECCCCC--CCCE--EE--------EECCCCCCEEEEEEEECCCCCEEEEEECC
T ss_conf             847999989979999996998799997688887--6502--89--------90789998899998117999799999489


Q ss_pred             CEEEEEECCCC
Q ss_conf             84899954689
Q 005546          186 SVFRLFNLASD  196 (691)
Q Consensus       186 n~iRlydl~~~  196 (691)
                      ++||+||+...
T Consensus        87 g~i~iWd~~~~   97 (325)
T d1pgua1          87 GKVIVWGWTFD   97 (325)
T ss_dssp             SEEEEEEEEEE
T ss_pred             CCEEEEEECCC
T ss_conf             97798540588

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.84  E-value=0.082  Score=25.99  Aligned_cols=83  Identities=11%  Similarity=0.188  Sum_probs=49.3

Q ss_pred             CEEEECCCCCCEEEEEEEECCCCCEEEEEECC-EEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEEC
Q ss_conf             44873487773125489969999989999268-39999958998888997127779995453454037841148999961
Q 005546           95 SKVMRADVKLNFEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHP  173 (691)
Q Consensus        95 yk~L~~~~pi~feI~qi~iSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP  173 (691)
                      .|+|+-  . ...|..+.+||+|.+||..+.. .|.|-.+..      + .. .+++.         .....|..+.|+|
T Consensus        48 ~~tL~G--H-~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~------~-~~-~~~~~---------~~~~~v~~v~~~~  107 (340)
T d1tbga_          48 RRTLRG--H-LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT------T-NK-VHAIP---------LRSSWVMTCAYAP  107 (340)
T ss_dssp             EEEECC--C-SSCEEEEEECTTSSEEEEEETTTEEEEEETTT------T-EE-EEEEE---------CSCSCEEEEEECT
T ss_pred             EEEECC--C-CCCEEEEEECCCCCEEEEEECCCCEEEEECCC------C-EE-EEEEE---------CCCCCEEEEEEEC
T ss_conf             279888--7-89888999989999999997899555631021------0-25-79972---------4653377567601


Q ss_pred             CCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf             8997799992498489995468999
Q 005546          174 YSDTHLGILSSDSVFRLFNLASDVM  198 (691)
Q Consensus       174 ~sds~LvVLTsDn~iRlydl~~~~~  198 (691)
                      .+ ..+++-..|+.+++|+......
T Consensus       108 ~~-~~l~~~~~d~~i~~~~~~~~~~  131 (340)
T d1tbga_         108 SG-NYVACGGLDNICSIYNLKTREG  131 (340)
T ss_dssp             TS-SEEEEEETTCCEEEEESSSSCS
T ss_pred             CC-EEEEEECCCCEEECCCCCCCCC
T ss_conf             21-1443101332010133222212

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.11  E-value=0.12  Score=24.98  Aligned_cols=33  Identities=6%  Similarity=0.117  Sum_probs=20.6

Q ss_pred             CCCEEEEEEECCC----CCEEEEEECCCEEEEEECCC
Q ss_conf             4114899996189----97799992498489995468
Q 005546          163 VIRTLQVSWHPYS----DTHLGILSSDSVFRLFNLAS  195 (691)
Q Consensus       163 ~~~I~qv~WHP~s----ds~LvVLTsDn~iRlydl~~  195 (691)
                      ...+..+.|.+..    ...++.-+.|+.+++|++..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~  155 (393)
T d1sq9a_         119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP  155 (393)
T ss_dssp             GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred             CCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEC
T ss_conf             8966899984478865421799983898199987404

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.81  E-value=0.14  Score=24.64  Aligned_cols=56  Identities=18%  Similarity=0.288  Sum_probs=33.1

Q ss_pred             CEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCEEEEE
Q ss_conf             0289995997599998896159999753189999752247884487348777312548996999998999926839999
Q 005546           53 KNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVM  131 (691)
Q Consensus        53 rnlla~~g~~~Lfvw~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pi~feI~qi~iSpsG~~LAl~G~~~V~Vv  131 (691)
                      +.++++..++.+.+|+-....                    ..+.+..  . ...|..+.++|+|.+++..+..+...+
T Consensus        68 ~~l~sgs~Dg~v~iWd~~~~~--------------------~~~~~~~--~-~~~v~~v~~~~~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          68 RLLVSASQDGKLIIWDSYTTN--------------------KVHAIPL--R-SSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTTE--------------------EEEEEEC--S-CSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             CEEEEEECCCCEEEEECCCCE--------------------EEEEEEC--C-CCCEEEEEEECCCEEEEEECCCCEEEC
T ss_conf             999999789955563102102--------------------5799724--6-533775676012114431013320101

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.37  E-value=0.16  Score=24.19  Aligned_cols=81  Identities=15%  Similarity=0.058  Sum_probs=57.3

Q ss_pred             CCCCCEEEEEEEECCCCCEEEEEEC-CEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCCCCEE
Q ss_conf             8777312548996999998999926-839999958998888997127779995453454037841148999961899779
Q 005546          101 DVKLNFEVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHL  179 (691)
Q Consensus       101 ~~pi~feI~qi~iSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~L  179 (691)
                      +.| ...|..|.+||+|++||..+. ..|.|-.+...     .....++..       +  .....|..+.|+|.++..|
T Consensus         8 ~~h-~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~-----~~~~~~~~~-------~--~h~~~V~~v~f~~~~~~~l   72 (342)
T d1yfqa_           8 QAP-KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQ-----AKNVDLLQS-------L--RYKHPLLCCNFIDNTDLQI   72 (342)
T ss_dssp             SCC-SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETT-----TTEEEEEEE-------E--ECSSCEEEEEEEESSSEEE
T ss_pred             CCC-CCCEEEEEEECCCCEEEEEECCCEEEEEECCCC-----CCCEEEEEE-------C--CCCCCEEEEEEECCCCCEE
T ss_conf             899-897888999589999999979992999975699-----863689885-------5--8999889999958999789


Q ss_pred             EEEECCCEEEEEECCCC
Q ss_conf             99924984899954689
Q 005546          180 GILSSDSVFRLFNLASD  196 (691)
Q Consensus       180 vVLTsDn~iRlydl~~~  196 (691)
                      ++-..|+.+++|++...
T Consensus        73 ~sg~~d~~v~~w~~~~~   89 (342)
T d1yfqa_          73 YVGTVQGEILKVDLIGS   89 (342)
T ss_dssp             EEEETTSCEEEECSSSS
T ss_pred             EECCCCCCEEEEECCCC
T ss_conf             98126531145420443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.02  E-value=0.19  Score=23.87  Aligned_cols=95  Identities=7%  Similarity=-0.003  Sum_probs=57.4

Q ss_pred             EEEEEEECCCCCEEEEEECCEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf             25489969999989999268399999589988889971277799954534540378411489999618997799992498
Q 005546          107 EVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDS  186 (691)
Q Consensus       107 eI~qi~iSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn  186 (691)
                      .+.-+..+|+|+.+|..+.+.+.|..+...      ..  .+.+        . .....|..+.|+|. +..|++=..|+
T Consensus        19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~------~~--~~~~--------~-~H~~~v~~~~~sp~-g~~latg~~dg   80 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSL------TD--TEIY--------T-EHSHQTTVAKTSPS-GYYCASGDVHG   80 (311)
T ss_dssp             CCCCCEECTTSSEEEEEETTEEEEEETTCS------SC--CEEE--------C-CCSSCEEEEEECTT-SSEEEEEETTS
T ss_pred             CEEEEEECCCCCEEEEEECCEEEEEECCCC------CE--EEEE--------C-CCCCCEEEEEEECC-CCEEECCCCCC
T ss_conf             759999969989999996999999999999------66--1797--------4-78888899999489-99672255673


Q ss_pred             EEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             48999546899997279982448998879999973179980179
Q 005546          187 VFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGD  230 (691)
Q Consensus       187 ~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsF~FG~~  230 (691)
                      +||+||+..........+..+           ...+.+++|.+.
T Consensus        81 ~i~iwd~~~~~~~~~~~~~~~-----------~~~v~~v~~s~d  113 (311)
T d1nr0a1          81 NVRIWDTTQTTHILKTTIPVF-----------SGPVKDISWDSE  113 (311)
T ss_dssp             EEEEEESSSTTCCEEEEEECS-----------SSCEEEEEECTT
T ss_pred             EEEEEEEECCCCCCCCCCCCC-----------CCCCCCCCCCCC
T ss_conf             674663101111000013433-----------575433233311

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.87  E-value=0.2  Score=23.74  Aligned_cols=28  Identities=18%  Similarity=0.127  Sum_probs=14.6

Q ss_pred             EEEEEEECCCCCEEEEEECCEEEEEEEC
Q ss_conf             2548996999998999926839999958
Q 005546          107 EVSRISINRNGSALLLIGSDGLCVMYLY  134 (691)
Q Consensus       107 eI~qi~iSpsG~~LAl~G~~~V~Vv~LP  134 (691)
                      .|..+.++|+|++++...+..+.+..+.
T Consensus        57 ~v~~v~~~~~g~~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2          57 MITGIKTTSKGDLFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred             CEEEEEEECCCEEECCCCEEEEEEECCC
T ss_conf             4899884033112102310268873167

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.85  E-value=0.2  Score=23.73  Aligned_cols=123  Identities=15%  Similarity=0.095  Sum_probs=69.3

Q ss_pred             EEEEEEEECCCCCEEEEEECCEEEEEEECCCCC----CCCCC-CEEEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEE
Q ss_conf             125489969999989999268399999589988----88997-1277799954534540378411489999618997799
Q 005546          106 FEVSRISINRNGSALLLIGSDGLCVMYLYGRTC----SSDNK-TIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLG  180 (691)
Q Consensus       106 feI~qi~iSpsG~~LAl~G~~~V~Vv~LP~~~~----~~d~~-~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~Lv  180 (691)
                      -.|..+.+||+|++||.-++..|.|-.+.....    ..+.. .........    .........|..+.|+|. +..|+
T Consensus        63 ~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~V~~l~~s~~-~~~l~  137 (388)
T d1erja_          63 SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT----SSSPSSDLYIRSVCFSPD-GKFLA  137 (388)
T ss_dssp             SCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC---------------------CCCCBEEEEEECTT-SSEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCC----CCCCCCCCCEEEEEECCC-CCCCE
T ss_conf             9689999999999999994994899981364057663166544324432111----014677898899998899-98012


Q ss_pred             EEECCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEE
Q ss_conf             9924984899954689999727998244899887999997317998017999983599999138829997
Q 005546          181 ILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL  250 (691)
Q Consensus       181 VLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsF~FG~~~~W~~lTLyiL~~~GDIYal  250 (691)
                      +-..|+.||+||.... . .  ...+.    +     ....+.+++|.+.    ...++....+|.|...
T Consensus       138 s~~~dg~v~i~~~~~~-~-~--~~~~~----~-----h~~~v~~~~~~~~----~~~~~~~~~~~~i~~~  190 (388)
T d1erja_         138 TGAEDRLIRIWDIENR-K-I--VMILQ----G-----HEQDIYSLDYFPS----GDKLVSGSGDRTVRIW  190 (388)
T ss_dssp             EEETTSCEEEEETTTT-E-E--EEEEC----C-----CSSCEEEEEECTT----SSEEEEEETTSEEEEE
T ss_pred             ECCCCCCCCCCCCCCC-C-C--CCCCC----C-----CCCCCCCCCCCCC----CCCCCCCCCCEEEEEE
T ss_conf             1344411112111111-1-1--11111----1-----1111111011111----1111122210156541

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.17  E-value=0.24  Score=23.20  Aligned_cols=30  Identities=17%  Similarity=0.110  Sum_probs=19.5

Q ss_pred             EEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf             489999618997799992498489995468
Q 005546          166 TLQVSWHPYSDTHLGILSSDSVFRLFNLAS  195 (691)
Q Consensus       166 I~qv~WHP~sds~LvVLTsDn~iRlydl~~  195 (691)
                      .....+.+.++..++.-..|+.+++||+..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~  131 (342)
T d1yfqa_         102 LGICRICKYGDDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             SCEEEEEEETTTEEEEEETTSEEEEECHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf             111111111111111101222111020234

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.15  E-value=0.46  Score=21.54  Aligned_cols=110  Identities=15%  Similarity=0.128  Sum_probs=56.9

Q ss_pred             EEEEEEEECCCCCEEEEEECCEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEEEEECC
Q ss_conf             12548996999998999926839999958998888997127779995453454037841148999961899779999249
Q 005546          106 FEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD  185 (691)
Q Consensus       106 feI~qi~iSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsD  185 (691)
                      .++..+..+++|..++..+..++.+.....      +..  .+.+...       .   .+  ...+|.++..++.-.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~-------~---~~--~~~~~~~~~~~v~~~~~  140 (287)
T d1pgua2          81 SQPKVASANNDGFTAVLTNDDDLLILQSFT------GDI--IKSVRLN-------S---PG--SAVSLSQNYVAVGLEEG  140 (287)
T ss_dssp             SCEEEEEECSSSEEEEEETTSEEEEEETTT------CCE--EEEEECS-------S---CE--EEEEECSSEEEEEETTT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEECCC------EEE--EEECCCC-------C---EE--EEEECCCCCEEEECCCC
T ss_conf             210146641678569996033210000110------035--4310122-------2---03--56521475111000221


Q ss_pred             CEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             848999546899997279982448998879999973179980179999835999991388299975
Q 005546          186 SVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILC  251 (691)
Q Consensus       186 n~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsF~FG~~~~W~~lTLyiL~~~GDIYalc  251 (691)
                      +.+++|++.. .. .  ...+..       . ....+.+.+|.+.    .-.|.+...+|.|+..-
T Consensus       141 ~~v~~~~~~~-~~-~--~~~~~~-------~-~~~~v~~~~~s~~----~~~l~~g~~dg~i~i~d  190 (287)
T d1pgua2         141 NTIQVFKLSD-LE-V--SFDLKT-------P-LRAKPSYISISPS----ETYIAAGDVMGKILLYD  190 (287)
T ss_dssp             SCEEEEETTE-EE-E--EEECSS-------C-CSSCEEEEEECTT----SSEEEEEETTSCEEEEE
T ss_pred             CEEEEEECCC-CC-E--EEEEEE-------C-CCCCEEEEEECCC----CCCCCCCCCCCCCCCEE
T ss_conf             0002100012-21-0--001210-------2-4785369995167----65211011111100000

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.91  E-value=0.56  Score=21.05  Aligned_cols=141  Identities=13%  Similarity=0.115  Sum_probs=80.7

Q ss_pred             EEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCEEEEEEE
Q ss_conf             28999599759999889615999975318999975224788448734877731254899699999899992683999995
Q 005546           54 NLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYL  133 (691)
Q Consensus        54 nlla~~g~~~Lfvw~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pi~feI~qi~iSpsG~~LAl~G~~~V~Vv~L  133 (691)
                      .++++..++.+.+|+-+..                    ...+.+..  . ...|..+..+++|.+++..+........-
T Consensus        31 ~l~s~s~Dg~i~iWd~~~~--------------------~~~~~~~~--h-~~~V~~~~~~~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          31 VMVSASEDATIKVWDYETG--------------------DFERTLKG--H-TDSVQDISFDHSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             EEEEEESSSCEEEEETTTC--------------------CCCEEECC--C-SSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             EEEEEECCCEEEEEECCCC--------------------CEEEEEEC--C-CCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             9999938992999989999--------------------79999957--8-88677776301111011111111101110


Q ss_pred             CCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCCC
Q ss_conf             89988889971277799954534540378411489999618997799992498489995468999972799824489988
Q 005546          134 YGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGR  213 (691)
Q Consensus       134 P~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~  213 (691)
                      ...     ....    .       ........+..+.|+|.+ ..+++...|+.+++||+...  .....+..+      
T Consensus        88 ~~~-----~~~~----~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~------  142 (317)
T d1vyhc1          88 FQG-----FECI----R-------TMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTG--YCVKTFTGH------  142 (317)
T ss_dssp             TTS-----SCEE----E-------CCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTC--CEEEEEECC------
T ss_pred             CCC-----CCCC----C-------CCCCCCCCCEEEECCCCC-CEEEEECCCCCEEEEECCCC--EEEEEECCC------
T ss_conf             011-----1111----1-------100000000000016998-55776526752357511443--034687167------


Q ss_pred             CCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             79999973179980179999835999991388299975
Q 005546          214 YRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILC  251 (691)
Q Consensus       214 s~~~s~~~avsF~FG~~~~W~~lTLyiL~~~GDIYalc  251 (691)
                           ...+.+++|.+.    .-.+.....+|.|+...
T Consensus       143 -----~~~~~~~~~~~~----~~~l~~~~~d~~v~~~~  171 (317)
T d1vyhc1         143 -----REWVRMVRPNQD----GTLIASCSNDQTVRVWV  171 (317)
T ss_dssp             -----SSCEEEEEECTT----SSEEEEEETTSCEEEEE
T ss_pred             -----CCCCEEEECCCC----CCEEEEEECCCEEEEEE
T ss_conf             -----776300001667----99999992798299975

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=80.92  E-value=1.2  Score=19.16  Aligned_cols=97  Identities=6%  Similarity=0.083  Sum_probs=61.4

Q ss_pred             EEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCE---EEE
Q ss_conf             28999599759999889615999975318999975224788448734877731254899699999899992683---999
Q 005546           54 NLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDG---LCV  130 (691)
Q Consensus        54 nlla~~g~~~Lfvw~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pi~feI~qi~iSpsG~~LAl~G~~~---V~V  130 (691)
                      .+.+.. ++++|+|+-+...                       +..+. . .-.|+.+..||+|++|+..|...   |.|
T Consensus        17 ~~a~~~-~g~v~v~d~~~~~-----------------------~~~~~-~-~~~v~~~~~spDg~~l~~~~~~~g~~v~v   70 (360)
T d1k32a3          17 LIAFVS-RGQAFIQDVSGTY-----------------------VLKVP-E-PLRIRYVRRGGDTKVAFIHGTREGDFLGI   70 (360)
T ss_dssp             CEEEEE-TTEEEEECTTSSB-----------------------EEECS-C-CSCEEEEEECSSSEEEEEEEETTEEEEEE
T ss_pred             EEEEEE-CCEEEEEECCCCC-----------------------EEECC-C-CCCEEEEEECCCCCEEEEEECCCCCEEEE
T ss_conf             999998-9969999899994-----------------------89916-9-99888899989999999999289989999


Q ss_pred             EEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf             99589988889971277799954534540378411489999618997799992498489995468
Q 005546          131 MYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS  195 (691)
Q Consensus       131 v~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~  195 (691)
                      ..+.       +...  +.  +       ......|..+.|+|. +..|+....|+.+++|++..
T Consensus        71 ~d~~-------~~~~--~~--~-------~~~~~~v~~~~~spd-g~~l~~~~~~~~~~~~~~~~  116 (360)
T d1k32a3          71 YDYR-------TGKA--EK--F-------EENLGNVFAMGVDRN-GKFAVVANDRFEIMTVDLET  116 (360)
T ss_dssp             EETT-------TCCE--EE--C-------CCCCCSEEEEEECTT-SSEEEEEETTSEEEEEETTT
T ss_pred             EECC-------CCCE--EE--E-------ECCCCEEEEEEECCC-CCCCCEECCCCCCCCCCCCC
T ss_conf             9899-------9948--87--5-------089712774121145-43210001111100000122