Citrus Sinensis ID: 005642
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 686 | 2.2.26 [Sep-21-2011] | |||||||
| O49287 | 695 | Putative pentatricopeptid | yes | no | 0.835 | 0.824 | 0.510 | 0.0 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.822 | 0.809 | 0.353 | 1e-105 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.844 | 0.736 | 0.327 | 2e-90 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.731 | 0.675 | 0.311 | 5e-86 | |
| Q9SKQ4 | 597 | Pentatricopeptide repeat- | no | no | 0.677 | 0.778 | 0.332 | 1e-85 | |
| Q9ZQ74 | 689 | Pentatricopeptide repeat- | no | no | 0.733 | 0.730 | 0.318 | 1e-85 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.798 | 0.644 | 0.307 | 6e-85 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.771 | 0.677 | 0.299 | 3e-84 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.804 | 0.726 | 0.307 | 9e-83 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.739 | 0.626 | 0.307 | 6e-81 |
| >sp|O49287|PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/668 (51%), Positives = 444/668 (66%), Gaps = 95/668 (14%)
Query: 7 YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
Y RLLQSC++ + + +Q + LKKG L+S + +AN LLQMY R G A LFDE
Sbjct: 28 YYVRLLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDE 87
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQ-------------------------------LF 95
MP RN FSWN MIEG+M G K SL+ LF
Sbjct: 88 MPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLF 147
Query: 96 NVMPQKNDFSWNMLISGF------------------------------AKADLAALEYGK 125
N MP+K+ + N L+ G+ A A+L AL+ GK
Sbjct: 148 NAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELNFSADAITLTTVLKACAELEALKCGK 207
Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
QIH+ IL+ G++ DS + SSLVN+Y KCGD A+ +L ++EPDD LSALISGYANCG
Sbjct: 208 QIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCG 267
Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
++N++R +FDR ++ ++WNSMISGYI+NN EAL+LF++MR N ED+ TLA+V++
Sbjct: 268 RVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMR-NETREDSRTLAAVIN 326
Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
AC LGFLE GKQ+H HACK G+IDD++VAS LLD YSK G P +ACKLFSE++ YDTIL
Sbjct: 327 ACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTIL 386
Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
LN+MI VY SCGRI+DAK +F + NKSLISWNSM G SQNG +E L+ F M+KLDL
Sbjct: 387 LNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDL 446
Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
D+ SL+SVISACA+ISSLELGEQVFAR TI+GLDSDQ++S+SL+D YCKCG+
Sbjct: 447 PTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRR 506
Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
+A+ LF +M G++PT ITF +L+AC++CGL
Sbjct: 507 VFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGL 566
Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
V+EG+K F++MK + P+ EH+SCMVDL ARAG + EA+NL+E+MPF+ D MWSSIL
Sbjct: 567 VEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSIL 626
Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
RGCVA+G K +G+K AE++IEL+PEN+ AY+QLS+IFATSG+WE S+L+R +MRE +V K
Sbjct: 627 RGCVANGYKAMGKKAAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNVTK 686
Query: 573 LPGCSWAD 580
PG SW D
Sbjct: 687 NPGSSWTD 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/620 (35%), Positives = 343/620 (55%), Gaps = 56/620 (9%)
Query: 8 LARLLQSC--NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
A+LL SC + +I+V + +H +K G N I NRL+ Y +CG+ D +FD
Sbjct: 22 FAKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIF-IQNRLIDAYSKCGSLEDGRQVFD 79
Query: 66 EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEY 123
+MP+RN ++WN+++ G KLG +++ LF MP+++ +WN ++SGFA+ D AL Y
Sbjct: 80 KMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCY 139
Query: 124 GKQIHSH-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM-KEP---DDFCLSALI 178
+H ++N F SVL + D N QV +++ K P D + SAL+
Sbjct: 140 FAMMHKEGFVLNEYSFASVLSAC-----SGLNDMNKGVQVHSLIAKSPFLSDVYIGSALV 194
Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
Y+ CG +NDA+RVFD D + V WNS+I+ + N EAL +F M + V D
Sbjct: 195 DMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEV 254
Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSE 297
TLASV+SAC+SL ++ G++VHG K + +D+I+++A +D Y+K +A +F
Sbjct: 255 TLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDS 314
Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
+ + + I +MI+ Y+ + A+ +F M ++++SWN++I G +QNG EAL LF
Sbjct: 315 MPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF 374
Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLV 411
C + + + +S A+++ ACA+++ L LG Q V G + D + SL+
Sbjct: 375 CLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLI 434
Query: 412 DFYCKC---------------------------------GYDALALFNEMRNTGVKPTII 438
D Y KC G +AL LF EM +G KP I
Sbjct: 435 DMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHI 494
Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
T +LSAC H G V+EG+ +F +M + + P +HY+CMVDL RAG L EA ++IE+
Sbjct: 495 TMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEE 554
Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
MP + D +W S+L C H + LG+ VAE+++E++P N+ Y+ LS+++A G+WE
Sbjct: 555 MPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDV 614
Query: 559 SLIRDIMREKHVGKLPGCSW 578
+R MR++ V K PGCSW
Sbjct: 615 MNVRKSMRKEGVTKQPGCSW 634
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 334 bits (856), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 213/651 (32%), Positives = 333/651 (51%), Gaps = 72/651 (11%)
Query: 1 MDTRIDYLARLLQ-SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
+ T ++ LLQ S N + + +H +K G++ S + N L+ +Y + G
Sbjct: 9 LSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVY-LMNNLMNVYSKTGYALH 67
Query: 60 ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK---- 115
A LFDEMP R FSWN ++ + K G + + + F+ +PQ++ SW +I G+
Sbjct: 68 ARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQY 127
Query: 116 --------------------------ADLAA---LEYGKQIHSHILVNGLDFDSVLGSSL 146
A +AA +E GK++HS I+ GL + + +SL
Sbjct: 128 HKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSL 187
Query: 147 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 206
+N+Y KCGD A V + M D +A+I+ + G+M+ A F++ + V WN
Sbjct: 188 LNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWN 247
Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACK 265
SMISG+ D AL +F KM R+ +L D TLASVLSAC++L L GKQ+H H
Sbjct: 248 SMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVT 307
Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL--LNTMITVYSSCGRIEDAK 323
G IV +AL+ YS+ G A +L + D + ++ Y G + AK
Sbjct: 308 TGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAK 367
Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
+IF ++ ++ +++W +MIVG Q+GS EA++LF +M R + ++LA+++S ++++
Sbjct: 368 NIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLA 427
Query: 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------- 418
SL G+Q+ G +S +L+ Y K G
Sbjct: 428 SLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMI 487
Query: 419 ---------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
+AL LF M G++P IT+ + SAC H GLV +G+++FD MK I
Sbjct: 488 IALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKI 547
Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
P + HY+CMVDLF RAG L EA IE+MP E DV W S+L C H + LG+ AE
Sbjct: 548 IPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAE 607
Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
R++ L+PEN+ AY L+++++ G+WE+++ IR M++ V K G SW +
Sbjct: 608 RLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIE 658
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (817), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 187/601 (31%), Positives = 284/601 (47%), Gaps = 99/601 (16%)
Query: 45 NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
N ++ Y + T A +FD +P+ N FSWN ++ + K G + F +P ++
Sbjct: 45 NNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGV 104
Query: 105 SWNMLISGFAKADLAA----------------------------------LEYGKQIHSH 130
+WN+LI G++ + L + GKQIH
Sbjct: 105 TWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQ 164
Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
++ G + ++GS L+ +Y G + A +V + + + ++L+ G CG + DA
Sbjct: 165 VIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDA 224
Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
++F R + SV W +MI G N EA+ F +M+ G+ D SVL AC L
Sbjct: 225 LQLF-RGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGL 283
Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
G + GKQ+H + D + V SAL+D Y K
Sbjct: 284 GAINEGKQIHACIIRTNFQDHIYVGSALIDMYCK-------------------------- 317
Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
C + AK +F M K+++SW +M+VG Q G EA+ +F +M + + D +
Sbjct: 318 -----CKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHY 372
Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------ 418
+L ISACAN+SSLE G Q + GL +S SLV Y KCG
Sbjct: 373 TLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEM 432
Query: 419 ---------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
+ + LF++M G+KP +T T ++SAC GLV++GQ
Sbjct: 433 NVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQ 492
Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
++F M +Y I P I HYSCM+DLF+R+G L EA+ I MPF D W+++L C
Sbjct: 493 RYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRN 552
Query: 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
G+ +G+ AE +IELDP + Y LSSI+A+ G+W+ + +R MREK+V K PG S
Sbjct: 553 KGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQS 612
Query: 578 W 578
W
Sbjct: 613 W 613
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 318 bits (814), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 166/500 (33%), Positives = 275/500 (55%), Gaps = 35/500 (7%)
Query: 116 ADLAALEYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
D +L+ GK IH H+ + G +++L + L+ +Y KCG A +V + M + +
Sbjct: 57 GDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSW 116
Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
+ ++SGY G + AR VFD + V WN+M+ GY + EAL + + RR+G+
Sbjct: 117 NNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIK 176
Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
+ + A +L+AC L+ +Q HG G + +V+++ +++D Y+K G A +
Sbjct: 177 FNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRC 236
Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
F E+ V D + T+I+ Y+ G +E A+ +F MP K+ +SW ++I G + GS AL
Sbjct: 237 FDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRAL 296
Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
DLF M L ++ ++F+ +S + A A+I+SL G+++ + + + I+ +SL+D Y
Sbjct: 297 DLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMY 356
Query: 415 CKCG----------------------------------YDALALFNEMRNTGVKPTIITF 440
K G + AL + ++M V+P T
Sbjct: 357 SKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTL 416
Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
IL+AC H GLV+EG +WF++M Q+ I P+ EHY+C++DL RAGC E + IE+MP
Sbjct: 417 VVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMP 476
Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
FE D +W++IL C HG++ LG+K A+ +I+LDPE++ YI LSSI+A G+WE
Sbjct: 477 FEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEK 536
Query: 561 IRDIMREKHVGKLPGCSWAD 580
+R +M+++ V K SW +
Sbjct: 537 LRGVMKKRRVNKEKAVSWIE 556
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 318 bits (814), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 194/609 (31%), Positives = 310/609 (50%), Gaps = 106/609 (17%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
++ L++C + GK++H +K ++ + LL MY +CG A +F+++
Sbjct: 145 FSKALKACTELQDLDNGKKIHCQLVKVPSFDNV--VLTGLLDMYAKCGEIKSAHKVFNDI 202
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKADLAALEY 123
RN W +MI G++K E+ L LFN M + N ++++ LI K L+AL
Sbjct: 203 TLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTK--LSALHQ 260
Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
GK H ++ +G++ S L +SL+++Y KC
Sbjct: 261 GKWFHGCLVKSGIELSSCLVTSLLDMYVKC------------------------------ 290
Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
G +++ARRVF+ + VMW +MI GY N EAL LF KM+ + + T+ASV
Sbjct: 291 -GDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASV 349
Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
LS C + LE G+ VHG + KVG+ +DT
Sbjct: 350 LSGCGLIENLELGRSVHGLSIKVGI--------------------------------WDT 377
Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
+ N ++ +Y+ C + DAK++F K +++WNS+I G SQNGS EAL LF MN
Sbjct: 378 NVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSE 437
Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGL--DSDQIISTSLVDFYCKCG--- 418
+ + ++AS+ SACA++ SL +G + A +G S + T+L+DFY KCG
Sbjct: 438 SVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQ 497
Query: 419 -----YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACD 448
+D +L LF EM KP TFT+ILSAC
Sbjct: 498 SARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACG 557
Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
H G+V EG+K+F +M Y+ P +HY+CMVD+ ARAG L +A+++IE+MP + DV +
Sbjct: 558 HTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCF 617
Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
+ L GC H LG V ++M++L P++A Y+ +S+++A+ G W ++ +R++M+++
Sbjct: 618 GAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQR 677
Query: 569 HVGKLPGCS 577
+ K+ G S
Sbjct: 678 GLSKIAGHS 686
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (808), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 194/630 (30%), Positives = 320/630 (50%), Gaps = 82/630 (13%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
+ ++C S+ G+ H L G +++ + N L+ MY RC + +DA +FDEM
Sbjct: 133 VFKACGEISSVRCGESAHALSLVTGFISNVF-VGNALVAMYSRCRSLSDARKVFDEMSVW 191
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN----MLISGFAK-ADLAALEYGK 125
+ SWN++IE + KLG + +L++F+ M N+F L++ A L GK
Sbjct: 192 DVVSWNSIIESYAKLGKPKVALEMFSRM--TNEFGCRPDNITLVNVLPPCASLGTHSLGK 249
Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
Q+H + + + + +G+ LV++Y KCG + AN V + M D +A+++GY+ G
Sbjct: 250 QLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIG 309
Query: 186 KMNDARRVFDRTTDTS----SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
+ DA R+F++ + V W++ ISGY EAL + +M +G+ + TL
Sbjct: 310 RFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLI 369
Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
SVLS C+S+G L HGK++H +A K + K G +
Sbjct: 370 SVLSGCASVGALMHGKEIHCYAIKYPI------------DLRKNGHGDE----------- 406
Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKS--LISWNSMIVGLSQNGSPIEALDLFCN 359
+++N +I +Y+ C +++ A+ +F ++ K +++W MI G SQ+G +AL+L
Sbjct: 407 -NMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSE 465
Query: 360 MNKLD--LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ-----IISTSLVD 412
M + D R + F+++ + ACA++++L +G+Q+ A L + Q +S L+D
Sbjct: 466 MFEEDCQTRPNAFTISCALVACASLAALRIGKQIHA----YALRNQQNAVPLFVSNCLID 521
Query: 413 FYCKCGY---------------------------------DALALFNEMRNTGVKPTIIT 439
Y KCG +AL +F+EMR G K +T
Sbjct: 522 MYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVT 581
Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
+L AC H G++ +G ++F+ MK + + P EHY+C+VDL RAG LN A+ LIE+M
Sbjct: 582 LLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEM 641
Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
P E +W + L C HG LG AE++ EL + +Y LS+++A +G W+ +
Sbjct: 642 PMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVT 701
Query: 560 LIRDIMREKHVGKLPGCSWADGIAFNCWFL 589
IR +MR K V K PGCSW +GI F
Sbjct: 702 RIRSLMRHKGVKKRPGCSWVEGIKGTTTFF 731
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (801), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 182/607 (29%), Positives = 307/607 (50%), Gaps = 78/607 (12%)
Query: 38 NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNV 97
+S + N + YMR G +AL +F MPR + S+N MI G+++ G E + +LF+
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 98 MPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
MP+++ SWN++I G+ + GK ++ D S +++++ Y + G +
Sbjct: 121 MPERDLVSWNVMIKGYVRNR----NLGKARELFEIMPERDVCSW--NTMLSGYAQNGCVD 174
Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
A V + M E +D +AL+S Y KM +A +F + + V WN ++ G++ +
Sbjct: 175 DARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKK 234
Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
EA F M + D + ++++ + G ++ +Q+ + + DV +A
Sbjct: 235 IVEARQFFDSMN----VRDVVSWNTIITGYAQSGKIDEARQLFDES----PVQDVFTWTA 286
Query: 278 LLDTYSKRGMPSDACKLFSEL-------------------------KVYDTI------LL 306
++ Y + M +A +LF ++ +++D +
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTW 346
Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
NTMIT Y+ CG+I +AK++F MP + +SW +MI G SQ+G EAL LF M + R
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGR 406
Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
+++ S +S +S CA++ +LELG+Q+ R+ G ++ + +L+ YCKCG
Sbjct: 407 LNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL 466
Query: 419 ------------------YD-------ALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
Y AL F M+ G+KP T A+LSAC H GLV
Sbjct: 467 FKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLV 526
Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
+G+++F M Y + P +HY+CMVDL RAG L +A NL++ MPFE D +W ++L
Sbjct: 527 DKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLG 586
Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
HG+ L A+++ ++PEN+ Y+ LS+++A+SG W +R MR+K V K+
Sbjct: 587 ASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKV 646
Query: 574 PGCSWAD 580
PG SW +
Sbjct: 647 PGYSWIE 653
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 308 bits (789), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 183/596 (30%), Positives = 297/596 (49%), Gaps = 44/596 (7%)
Query: 26 QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
Q H LK G N I+ +L+ Y DA L+ +P +S++++I K
Sbjct: 36 QAHARILKSGAQNDGY-ISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKA 94
Query: 86 GHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGKQIHSHILVNGLDFDSVLG 143
+S+ +F+ M + ++ K A+L+A + GKQIH V+GLD D+ +
Sbjct: 95 KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154
Query: 144 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT----D 199
S+ ++Y +CG A +V + M + D SAL+ YA G + + R+ +
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214
Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
+ V WN ++SG+ + EA+++F K+ G D T++SVL + L G+ +
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274
Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
HG+ K G++ D V SA++D Y K G LF++ ++ + + N IT S G +
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334
Query: 320 EDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
+ A +F +++ +SW S+I G +QNG IEAL+LF M ++ + ++ S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394
Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------------- 419
+ AC NI++L G + L + + ++L+D Y KCG
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNL 454
Query: 420 -----------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
+ +++F + T +KP I+FT++LSAC GL EG K+F
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514
Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
M +Y I P +EHYSCMV+L RAG L EA +LI++MPFE D +W ++L C +
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVD 574
Query: 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
L AE++ L+PEN Y+ LS+I+A G W + IR+ M + K PGCSW
Sbjct: 575 LAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSW 630
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 302 bits (774), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 186/605 (30%), Positives = 296/605 (48%), Gaps = 98/605 (16%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
LL+ C + VGK++H +K G + L L MY +C +A +FD MP R
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSG-FSLDLFAMTGLENMYAKCRQVNEARKVFDRMPER 199
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGF-AKADLAALEYGKQIH 128
+ SWN ++ G+ + G +L++ M ++N S+ ++S A + L + GK+IH
Sbjct: 200 DLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIH 259
Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
+ + +G D SLVN+ +AL+ YA CG +
Sbjct: 260 GYAMRSGFD-------SLVNIS------------------------TALVDMYAKCGSLE 288
Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
AR++FD + + V WNSMI Y+ N EA+L+F KM GV ++ L AC+
Sbjct: 289 TARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACA 348
Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
LG LE G+ +H + ++G+ +V V +N+
Sbjct: 349 DLGDLERGRFIHKLSVELGLDRNVSV-------------------------------VNS 377
Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
+I++Y C ++ A +F + +++L+SWN+MI+G +QNG PI+AL+ F M ++ D
Sbjct: 378 LISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPD 437
Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD 420
F+ SVI+A A +S + + V LD + ++T+LVD Y KCG +D
Sbjct: 438 TFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFD 497
Query: 421 -------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
AL LF EM+ +KP +TF +++SAC H GLV+
Sbjct: 498 MMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEA 557
Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
G K F MK Y I+ ++HY MVDL RAG LNEA + I QMP + V ++ ++L C
Sbjct: 558 GLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC 617
Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
H + K AER+ EL+P++ ++ L++I+ + WEK +R M + + K PG
Sbjct: 618 QIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPG 677
Query: 576 CSWAD 580
CS +
Sbjct: 678 CSMVE 682
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 686 | ||||||
| 224066769 | 681 | predicted protein [Populus trichocarpa] | 0.845 | 0.851 | 0.588 | 0.0 | |
| 255558480 | 681 | pentatricopeptide repeat-containing prot | 0.845 | 0.851 | 0.577 | 0.0 | |
| 225457861 | 685 | PREDICTED: putative pentatricopeptide re | 0.849 | 0.851 | 0.569 | 0.0 | |
| 147833409 | 1796 | hypothetical protein VITISV_018083 [Viti | 0.833 | 0.318 | 0.568 | 0.0 | |
| 356509350 | 678 | PREDICTED: putative pentatricopeptide re | 0.830 | 0.840 | 0.521 | 0.0 | |
| 357518009 | 672 | Pentatricopeptide repeat protein [Medica | 0.817 | 0.834 | 0.524 | 0.0 | |
| 297839569 | 675 | pentatricopeptide repeat-containing prot | 0.835 | 0.848 | 0.508 | 0.0 | |
| 15223809 | 695 | pentatricopeptide repeat-containing prot | 0.835 | 0.824 | 0.510 | 0.0 | |
| 302142722 | 581 | unnamed protein product [Vitis vinifera] | 0.639 | 0.755 | 0.526 | 1e-151 | |
| 108712115 | 684 | pentatricopeptide, putative, expressed [ | 0.826 | 0.828 | 0.400 | 1e-134 |
| >gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa] gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/680 (58%), Positives = 492/680 (72%), Gaps = 100/680 (14%)
Query: 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
MD + LAR LQS NT HSIH GKQLH+ F KKG++ STL +ANRLLQMY RCG+ TDA
Sbjct: 1 MDLDLQNLARFLQSLNTPHSIHQGKQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDA 60
Query: 61 LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS--------------- 105
LFDEMP RNCFSWN MIEG+MK G+KE+S++LF++M KND+S
Sbjct: 61 HKLFDEMPHRNCFSWNTMIEGYMKSGNKERSIRLFDMMSNKNDYSWNVVFSGFAKAGEME 120
Query: 106 ----------------WNMLISGFAK---------------------------------- 115
WN +I +A+
Sbjct: 121 IARRLFNEMPNRNGVVWNSMIHSYARNGSPREAVRLFKELNLDPLDKSCCDTFVLATVIG 180
Query: 116 --ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
DL ++ GKQIH+ IL++ ++ DSVL SSL+NLYGKCGD +SA+ VLN M+EPDDF
Sbjct: 181 ACTDLGEIQCGKQIHARILIDNMELDSVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFS 240
Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
LSALI+GYAN G+MNDARR F R +++ V+WNS+ISGY++NNE+ EA LLF+ M++ G+
Sbjct: 241 LSALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGL 300
Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
D STLA++LSACSSL +HGKQ+H +ACKVG+I D +VASA +D YSK G +DACK
Sbjct: 301 KVDFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVVASAFIDAYSKCGSLNDACK 360
Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
LFSELK YDTILLN+MITVYS+ G+IEDAK IF TMP+KSLISWNSMIVGLSQNG P+EA
Sbjct: 361 LFSELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEA 420
Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
LDLFC MNKLDLRM++F+L SVISACA+ISSLELGEQ+FAR T++GLDSD++ISTSLVDF
Sbjct: 421 LDLFCMMNKLDLRMNRFNLTSVISACASISSLELGEQIFARATVVGLDSDEVISTSLVDF 480
Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
YCKCG+ +AL LFNEMR+ GV+PT ITF
Sbjct: 481 YCKCGFIEIGRKLFDTMMKSDEISWNSMLMGYATNGHGLEALTLFNEMRHAGVRPTEITF 540
Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
T +LSACDHCGLVKEG +WF+ M++ YHIDP IEHYSCMVDLFARAGCL EA+NLI++MP
Sbjct: 541 TGVLSACDHCGLVKEGWRWFNIMQYDYHIDPGIEHYSCMVDLFARAGCLEEAMNLIKRMP 600
Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
FEAD MWSS+LRGC+AHG+K LG KVA+++IELDPEN+ AY+QLSSIFATSG+WE S+L
Sbjct: 601 FEADASMWSSVLRGCMAHGEKDLGEKVAQQIIELDPENSGAYVQLSSIFATSGDWESSAL 660
Query: 561 IRDIMREKHVGKLPGCSWAD 580
+R +M+E+ V K PG SWA+
Sbjct: 661 VRKVMQERQVQKYPGYSWAN 680
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/681 (57%), Positives = 482/681 (70%), Gaps = 101/681 (14%)
Query: 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TD 59
MD + LARLLQS NTH SIH GKQLHL FLKKG++N+T+ +ANRLLQMY RCG TD
Sbjct: 1 MDLELRSLARLLQSLNTHSSIHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTD 60
Query: 60 ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW------------- 106
A LFDEMP RNCFSWN MIEG+M++G KE+SL+LF++MPQKND+SW
Sbjct: 61 AHNLFDEMPERNCFSWNTMIEGYMRVGDKERSLKLFDLMPQKNDYSWNVVISGFAKAGEL 120
Query: 107 ------------------NMLISGFAK--------------------------------- 115
N +I G+A+
Sbjct: 121 DVAKKLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVI 180
Query: 116 ---ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 172
ADL A+EYGKQ+H+ IL++ ++ DSVL SSL+NLY KCG ++AN VL MM E DDF
Sbjct: 181 GACADLGAIEYGKQVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVLKMMDEVDDF 240
Query: 173 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
LSALI GYANCG+M+DA R+F ++ V+WNS+ISGY++N+E+ +A L ++M+ N
Sbjct: 241 SLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMKAFALVNEMKNNR 300
Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
V D+ST+ +LSACSS G ++ KQ+HG+ CKVG+ID VIVASA +D YSK P+DAC
Sbjct: 301 VQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAFIDAYSKCRNPNDAC 360
Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
KLFSELK YDT+LLN+MIT Y +CGRI DAK+IF TMP+KSLISWNS+IVGL+QN P+E
Sbjct: 361 KLFSELKAYDTVLLNSMITAYCNCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNAYPLE 420
Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
ALD+F MNKLDLRMD+FSLASVISACA ISSLELGEQVFAR I GL+SDQ +STSLVD
Sbjct: 421 ALDVFGKMNKLDLRMDRFSLASVISACACISSLELGEQVFARAIITGLESDQAVSTSLVD 480
Query: 413 FYCKCGY---------------------------------DALALFNEMRNTGVKPTIIT 439
FYCKCG+ + L LFNEM+ G++PT IT
Sbjct: 481 FYCKCGFIENGRKLFDSMIKTDEVSWNSMLMGYATNGYGLETLTLFNEMKQAGLRPTDIT 540
Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
FT +LSACDHCGLV+EG+KWF+ MK+ YHIDP IEHYSCMVDLFARAGCL EA+NL+E M
Sbjct: 541 FTGVLSACDHCGLVEEGRKWFNIMKYDYHIDPGIEHYSCMVDLFARAGCLKEALNLVEHM 600
Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
PFEAD MWSS+LRGCVAHGDK LG+KVA+++I+L+PE++ AY+QLS IFATSG+WE S+
Sbjct: 601 PFEADCSMWSSVLRGCVAHGDKDLGKKVAQQIIQLNPESSSAYVQLSGIFATSGDWESSA 660
Query: 560 LIRDIMREKHVGKLPGCSWAD 580
L+R IM EK V K PG SWAD
Sbjct: 661 LVRKIMTEKQVKKHPGFSWAD 681
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/683 (56%), Positives = 475/683 (69%), Gaps = 100/683 (14%)
Query: 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
+D + LAR L SCN + SI+ G+ LH+ FLK G+L+S L I NRLLQMY RC + +A
Sbjct: 2 VDLDLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 61
Query: 61 LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS--------------- 105
LF+EMP+RNCFSWN MIEG++K G K KSL+LF+ MP K+ FS
Sbjct: 62 QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLE 121
Query: 106 ----------------WNMLISGFAK---------------------------------- 115
WN +I G+A
Sbjct: 122 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVG 181
Query: 116 --ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
+L AL+ GKQIH+ I+V+ ++FDSVLGSSLVNLYGKCGD +SAN VLN+MKEPD F
Sbjct: 182 ACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFS 241
Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
LSALISGYA+CG+MNDARR+F ++ V+WNSMISGY++NNE EAL LF+ MRR GV
Sbjct: 242 LSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGV 301
Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
ED ST ASVLSACS+LG ++ G QVH H KVG +D+I+ SAL+D YSK P DACK
Sbjct: 302 QEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACK 361
Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
LFS+L+ YDTILLN+MITVYS+CGRI+DA+ IF TMP+KSLISWNSMIVG SQN PIEA
Sbjct: 362 LFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEA 421
Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
LDLFC MNKL LRMDKFSLA VISACA+ISSLELGEQ+FAR TIIGL+ DQIISTSLVDF
Sbjct: 422 LDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDF 481
Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
YCKCG +AL +F++MR+ GV+PT ITF
Sbjct: 482 YCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITF 541
Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
+LSACDHCGLV+EG+KWF AMK YHI+P IEHYSCMVDL+ARAG L +A+NLIEQMP
Sbjct: 542 VGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMP 601
Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
+AD MWSS+LRGCVAHG+ LG+KVA+R+I+LDPEN+ AY+QLS I+AT +W +S+
Sbjct: 602 LKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQ 661
Query: 561 IRDIMREKHVGKLPGCSWADGIA 583
+R +M +K + K+PGCSWAD +
Sbjct: 662 VRKLMYDKKIPKVPGCSWADSLT 684
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/672 (56%), Positives = 466/672 (69%), Gaps = 100/672 (14%)
Query: 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
+D + LAR L SCN + SI+ G+ LH+ FLK G+L+S L I NRLLQMY RC + +A
Sbjct: 2 VDLDLHSLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 61
Query: 61 LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS--------------- 105
LF+EMP+RNCFSWN MIEG++K G K KSL+LF+ MP K+ FS
Sbjct: 62 QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLE 121
Query: 106 ----------------WNMLISGFAK---------------------------------- 115
WN +I G+A
Sbjct: 122 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVG 181
Query: 116 --ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
+L AL+ GKQIH+ I+V+ ++FDSVLGSSLVNLYGKCGD +SAN VLN+MKEPD F
Sbjct: 182 ACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFS 241
Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
LSALISGYA+CG+MNDARR+F ++ V+WNSMISGY++NNE EAL LF+ MRR GV
Sbjct: 242 LSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGV 301
Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
ED ST ASVLSACS+LG ++ G QVH H KVG +D+I+ SAL+D YSK P DACK
Sbjct: 302 QEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACK 361
Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
LFS+L+ YDTILLN+MITVYS+CGRI+DA+ IF TMP+KSLISWNSMIVG SQN PIEA
Sbjct: 362 LFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEA 421
Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
LDLFC MNKL LRMDKFSLA VISACA+ISSLELGEQ+FAR TIIGL+ DQIISTSLVDF
Sbjct: 422 LDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDF 481
Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
YCKCG +AL +F++MR+ GV+PT ITF
Sbjct: 482 YCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITF 541
Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
+LSACDHCGLV+EG+KWF AMK YHI+P IEHYSCMVDL+ARAG L +A+NLIEQMP
Sbjct: 542 VGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMP 601
Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
+AD MWSS+LRGCVAHG+ LG+KVA+R+I+LDPEN+ AY+QLS I+AT +W +S+
Sbjct: 602 LKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQ 661
Query: 561 IRDIMREKHVGK 572
+R +M +K + K
Sbjct: 662 VRKLMYDKKIPK 673
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/675 (52%), Positives = 446/675 (66%), Gaps = 105/675 (15%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L R LQS +T + G+QLH+ FLK GILNS++ +ANRLLQ+Y RC N DA LFDEM
Sbjct: 6 LVRTLQSWST---LREGRQLHVAFLKTGILNSSVAVANRLLQLYSRCRNLQDASHLFDEM 62
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS---------------------- 105
P+ N FSWN +++ + GH +L LFN MP K FS
Sbjct: 63 PQTNSFSWNTLVQAHLNSGHTHSALHLFNAMPHKTHFSWNMVVSAFAKSGHLQLAHSLFN 122
Query: 106 ---------WNMLISGFAK------------------------------------ADLAA 120
WN +I +++ AD A
Sbjct: 123 AMPSKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLDPSQIVYRDAFVLATALGACADSLA 182
Query: 121 LEYGKQIHSHILVNG--LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
L GKQ+H+ + V+G L+ D VL SSL+NLYGKCGD +SA ++++ +++ D+F LSALI
Sbjct: 183 LNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDSAARIVSFVRDVDEFSLSALI 242
Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
SGYAN G+M +AR VFD D +V+WNS+ISGY+SN E+ EA+ LF M RNGV DAS
Sbjct: 243 SGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDAS 302
Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
+A++LSA S L +E KQ+H +ACK GV D++VAS+LLD YSK P +ACKLFSEL
Sbjct: 303 AVANILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLFSEL 362
Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
K YDTILLNTMITVYS+CGRIEDAK IF TMP+K+LISWNS++VGL+QN P EAL++F
Sbjct: 363 KEYDTILLNTMITVYSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACPSEALNIFS 422
Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
MNKLDL+MD+FS ASVISACA SSLELGEQVF + IGL+SDQIISTSLVDFYCKCG
Sbjct: 423 QMNKLDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCG 482
Query: 419 Y---------------------------------DALALFNEMRNTGVKPTIITFTAILS 445
+ +AL LF EM GV P+ ITFT +LS
Sbjct: 483 FVEIGRKVFDGMVKTDEVSWNTMLMGYATNGYGIEALTLFCEMTYGGVWPSAITFTGVLS 542
Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
ACDH GLV+EG+ F MK Y+I+P IEH+SCMVDLFARAG EA++LIE+MPF+AD
Sbjct: 543 ACDHSGLVEEGRNLFHTMKHSYNINPGIEHFSCMVDLFARAGYFEEAMDLIEEMPFQADA 602
Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
MW S+LRGC+AHG+K +G+ AE++I+L+PEN AYIQLS+I A+SG+WE S+L+R++M
Sbjct: 603 NMWLSVLRGCIAHGNKTIGKMAAEQIIQLEPENTGAYIQLSNILASSGDWEGSALVRELM 662
Query: 566 REKHVGKLPGCSWAD 580
R+KH K+PGCSWAD
Sbjct: 663 RDKHFQKIPGCSWAD 677
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357518009|ref|XP_003629293.1| Pentatricopeptide repeat protein [Medicago truncatula] gi|355523315|gb|AET03769.1| Pentatricopeptide repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/663 (52%), Positives = 435/663 (65%), Gaps = 102/663 (15%)
Query: 20 SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
+I +QLHL LK G L+S++ NRLLQ+Y R G+ DA LFDEMP+ N FSWN +I
Sbjct: 9 TIREARQLHLSLLKTGNLHSSVITTNRLLQLYSRRGSLHDASKLFDEMPQPNPFSWNTLI 68
Query: 80 EGFMKLGHKEKSLQLF-------------------------------NVMPQKNDFSWNM 108
E + LGH+ KSL+LF N MP KN WN
Sbjct: 69 EAHINLGHRNKSLELFHAMPHKTHYSWNLIVSTLSKSGDLQQAQALFNAMPMKNPLVWNS 128
Query: 109 LISGFAK------------------------------------ADLAALEYGKQIHSHIL 132
+I G+++ ADL AL+ GKQ+H+ +
Sbjct: 129 MIHGYSRHGYPRNSLLLFKEMNLDPLETVHRDAFVLSTVFGACADLFALDCGKQVHARVF 188
Query: 133 VNGLDF--DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
++G +F D VL SS+VN YGKCGD +SA +V+ +KE DDF LSAL+SGYAN G+M+DA
Sbjct: 189 IDGFEFEQDKVLCSSIVNFYGKCGDLDSAARVVGFVKEVDDFSLSALVSGYANAGRMSDA 248
Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
R+VFD D SV+WNS+ISGY+SN E+ EAL LF+KMRRNGV D S +A++LS SSL
Sbjct: 249 RKVFDNKVDPCSVLWNSIISGYVSNGEEMEALALFNKMRRNGVWGDFSAVANILSISSSL 308
Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
+E KQ+H HA K+G D++VAS LLD YSK P D+CKLF ELKVYD ILLNTMI
Sbjct: 309 LNVELVKQMHDHAFKIGATHDIVVASTLLDAYSKCQHPHDSCKLFHELKVYDAILLNTMI 368
Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
TVY +CGR+EDAK +F +MPNK+LISWNS++VGL+QN P EALD F MNKLD++MDKF
Sbjct: 369 TVYCNCGRVEDAKEVFNSMPNKTLISWNSILVGLTQNACPSEALDTFSMMNKLDVKMDKF 428
Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------- 419
S ASVISACA SSLELGEQ+F + +GL+SDQII TSLVDFYCKCG
Sbjct: 429 SFASVISACAIKSSLELGEQLFGKAITLGLESDQIICTSLVDFYCKCGLVEMGRKVFDGM 488
Query: 420 ----------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
+AL LFNEM +GV+P+ ITFT ILSACDHCGLV+EG+
Sbjct: 489 IKTDEVSWNTMLMGYATNGYGIEALTLFNEMGYSGVRPSAITFTGILSACDHCGLVEEGR 548
Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
F MK Y I+P IEHYSCMVDLFAR GC EA+ LIE+MPF+AD MW S+LRGCV+
Sbjct: 549 DLFRTMKHDYDINPGIEHYSCMVDLFARVGCFGEAMYLIEEMPFQADANMWLSVLRGCVS 608
Query: 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
HG+K +G+ AE++I+LDP N+ AYIQLS+I ATS +WE S+ +R++MR K+V K+PGCS
Sbjct: 609 HGNKTIGKMAAEKIIQLDPGNSGAYIQLSNILATSEDWEGSAEVRELMRNKNVQKIPGCS 668
Query: 578 WAD 580
W D
Sbjct: 669 WMD 671
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839569|ref|XP_002887666.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333507|gb|EFH63925.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/668 (50%), Positives = 445/668 (66%), Gaps = 95/668 (14%)
Query: 7 YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
Y RLLQSC+ + + +Q + FLKKG ++S + +AN LLQ+Y R G A LFDE
Sbjct: 8 YYVRLLQSCSNRNRETLWRQTNGLFLKKGFISSIVIVANHLLQIYSRSGKMGIARNLFDE 67
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQ-------------------------------LF 95
MP RN FSWN MIEG+M G K SL+ LF
Sbjct: 68 MPERNYFSWNTMIEGYMNSGDKGTSLRFFDMMPERDGYSWNVVISGFAKAGELSVARRLF 127
Query: 96 NVMPQKNDFSWNMLISGF------------------------------AKADLAALEYGK 125
+ MP+K+ + N L+ G+ A A+L AL+ GK
Sbjct: 128 DAMPEKDVVTLNSLLHGYILNGYSEEALRLFKELKFSADAITLTTVLKACAELEALKRGK 187
Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
QIH+ IL+ G++ DS + SSLVN+Y KCGD A+ +L + EPDD LS LISGYANCG
Sbjct: 188 QIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIGEPDDHSLSTLISGYANCG 247
Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
++N++RR+FDR ++ ++WNSMISGYI+NN EAL+LF++MR N ED+ TLA+V++
Sbjct: 248 RVNESRRLFDRKSNRCVILWNSMISGYIANNMKFEALVLFNEMR-NETWEDSRTLAAVIN 306
Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
AC LGFLE GKQ+H HACK G++DD++VAS LLD YSK G P +ACKLFSE++ YDTIL
Sbjct: 307 ACIGLGFLETGKQMHCHACKFGLVDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTIL 366
Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
LN+MI VY SCGRI+DAK +F + NKSLISWNSM G SQNG P+E L+ F M+KLDL
Sbjct: 367 LNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCPVETLEYFSQMHKLDL 426
Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
D+ SL+SVISACA+ISSL LGEQVFAR TI+GLDSDQI+S+SL+D YCKCG
Sbjct: 427 PTDEVSLSSVISACASISSLGLGEQVFARATIVGLDSDQIVSSSLIDLYCKCGSVENGRR 486
Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
++A+ LF +M G++PT ITF +L+AC++CGL
Sbjct: 487 VFDTMVKSDEVPWNSMISGYATNGHGFEAIDLFKKMSIAGIRPTQITFMVVLTACNYCGL 546
Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
V+EG+ F+AMK + P+ EH+SCMVDL ARAG + EA++L+E+MPF+AD MWSS+L
Sbjct: 547 VEEGRLLFEAMKLDHGFVPDKEHFSCMVDLLARAGYVEEAIDLVEEMPFDADASMWSSVL 606
Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
RGCVA+G K +G+KVAE++IEL+PEN+ AY+QLS+IFATSG+WE S+L+R +MRE +V K
Sbjct: 607 RGCVANGYKAMGKKVAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNVSK 666
Query: 573 LPGCSWAD 580
PG SWAD
Sbjct: 667 NPGSSWAD 674
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15223809|ref|NP_177827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75098688|sp|O49287.1|PP127_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial; Flags: Precursor gi|2829915|gb|AAC00623.1| Hypothetical protein [Arabidopsis thaliana] gi|332197804|gb|AEE35925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/668 (51%), Positives = 444/668 (66%), Gaps = 95/668 (14%)
Query: 7 YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
Y RLLQSC++ + + +Q + LKKG L+S + +AN LLQMY R G A LFDE
Sbjct: 28 YYVRLLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDE 87
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQ-------------------------------LF 95
MP RN FSWN MIEG+M G K SL+ LF
Sbjct: 88 MPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLF 147
Query: 96 NVMPQKNDFSWNMLISGF------------------------------AKADLAALEYGK 125
N MP+K+ + N L+ G+ A A+L AL+ GK
Sbjct: 148 NAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELNFSADAITLTTVLKACAELEALKCGK 207
Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
QIH+ IL+ G++ DS + SSLVN+Y KCGD A+ +L ++EPDD LSALISGYANCG
Sbjct: 208 QIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCG 267
Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
++N++R +FDR ++ ++WNSMISGYI+NN EAL+LF++MR N ED+ TLA+V++
Sbjct: 268 RVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMR-NETREDSRTLAAVIN 326
Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
AC LGFLE GKQ+H HACK G+IDD++VAS LLD YSK G P +ACKLFSE++ YDTIL
Sbjct: 327 ACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTIL 386
Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
LN+MI VY SCGRI+DAK +F + NKSLISWNSM G SQNG +E L+ F M+KLDL
Sbjct: 387 LNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDL 446
Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
D+ SL+SVISACA+ISSLELGEQVFAR TI+GLDSDQ++S+SL+D YCKCG+
Sbjct: 447 PTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRR 506
Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
+A+ LF +M G++PT ITF +L+AC++CGL
Sbjct: 507 VFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGL 566
Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
V+EG+K F++MK + P+ EH+SCMVDL ARAG + EA+NL+E+MPF+ D MWSSIL
Sbjct: 567 VEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSIL 626
Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
RGCVA+G K +G+K AE++IEL+PEN+ AY+QLS+IFATSG+WE S+L+R +MRE +V K
Sbjct: 627 RGCVANGYKAMGKKAAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNVTK 686
Query: 573 LPGCSWAD 580
PG SW D
Sbjct: 687 NPGSSWTD 694
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302142722|emb|CBI19925.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 295/560 (52%), Positives = 355/560 (63%), Gaps = 121/560 (21%)
Query: 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
+D + LAR L SCN + SI+ G+ LH+ FLK G+L+S L I NRLLQMY RC + +A
Sbjct: 38 VDLDLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 97
Query: 61 LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS--------------- 105
LF+EMP+RNCFSWN MIEG++K G K KSL+LF+ MP K+ FS
Sbjct: 98 QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLE 157
Query: 106 ----------------WNMLISGFAK---------------------------------- 115
WN +I G+A
Sbjct: 158 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVG 217
Query: 116 --ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
+L AL+ GKQIH+ I+V+ ++FDSVLGSSLVNLYGKCGD +SAN VLN+MKEPD F
Sbjct: 218 ACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFS 277
Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
LSALISGYA+CG+MNDARR+F ++ V+WNSMISGY++NNE EAL LF+ MRR GV
Sbjct: 278 LSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGV 337
Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
ED ST ASVLSACS+LG ++ G QVH H KVG +D+I+ SAL+D YSK P DACK
Sbjct: 338 QEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACK 397
Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
LFS+L+ YDTILLN+MITV LISWNSMIVG SQN PIEA
Sbjct: 398 LFSDLQAYDTILLNSMITV---------------------LISWNSMIVGFSQNACPIEA 436
Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
LDLFC MNKL LRMDKFSLA VISACA+ISSLELGEQ+FAR TIIGL+ DQIISTSLVDF
Sbjct: 437 LDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDF 496
Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
YCKCG +AL +F++MR+ GV+PT ITF
Sbjct: 497 YCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITF 556
Query: 441 TAILSACDHCGLVKEGQKWF 460
+LSACDHCGLV+EG+K +
Sbjct: 557 VGVLSACDHCGLVEEGRKCY 576
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|108712115|gb|ABF99910.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group] gi|215767226|dbj|BAG99454.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 271/676 (40%), Positives = 390/676 (57%), Gaps = 109/676 (16%)
Query: 10 RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG--NPTDALLLFDEM 67
+LL+SC S G+QLH LK G + S+LP +N LL MY RC + DA LFDEM
Sbjct: 12 QLLRSC----SAVAGQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQHDARRLFDEM 67
Query: 68 PRRNCFS-------------------------------WNAMIEGFMKLGHKEKSLQLFN 96
P +NCFS WN +I G + G+ + + L
Sbjct: 68 PVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGNLDMARSLLI 127
Query: 97 VMPQKNDFSWNMLISGFAK---------------------------------------AD 117
MP K+ + N ++ + + AD
Sbjct: 128 EMPVKDPVACNAVLHRYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVLATIVGACAD 187
Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
++G+Q H+ ++V+ ++ D VL +LVN+Y KCGD +SA VLN + + D+F LSAL
Sbjct: 188 WMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVLNGLTQVDEFSLSAL 247
Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
I GYA+CG +++A R+FDR + S MWNS+ISG +A LF +M R+ VL D+
Sbjct: 248 IYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFARMMRSDVLPDS 307
Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
ST AS+L+ C + G+Q+HG K G ++D+IVASAL+D YSK G+ DAC+ F E
Sbjct: 308 STYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCGLWEDACRAFRE 367
Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
L+ +DTI+LN+MITVYS+CG+IE+A+ IF + KS+ISWNSM+VGLSQNG +AL LF
Sbjct: 368 LRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQNGHARDALGLF 427
Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
C M++L LR+DK ++AS +SA ++I S+ GEQ+F+ T++GL SD ++++SL+D YCKC
Sbjct: 428 CEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVVASSLIDLYCKC 487
Query: 418 ---------------------------------GYDALALFNEMRNTGVKPTIITFTAIL 444
G++AL L M+ G+KP+ TF A+L
Sbjct: 488 GSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLELMKTKGIKPSERTFIAVL 547
Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
SAC H GLVKEG WF M+ + + P EHY+C+ DL RAG L E+V IE MPFEAD
Sbjct: 548 SACCHSGLVKEGLTWFHRMQADFSVSPSAEHYACVTDLLVRAGRLEESVEFIENMPFEAD 607
Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
W++++ GC A G++ + RKVA++++E++ + Y+QLSS A+ G+W KS+ IR +
Sbjct: 608 AVSWTTVIGGCKAQGNEAMMRKVAKKLMEMESSHPSLYVQLSSGLASLGDWTKSAEIRSM 667
Query: 565 MREKHVGKLPGCSWAD 580
M E+ + K PG SW D
Sbjct: 668 MYERRITKNPGYSWID 683
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 686 | ||||||
| TAIR|locus:2025242 | 695 | AT1G77010 [Arabidopsis thalian | 0.542 | 0.535 | 0.553 | 2.4e-108 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.811 | 0.751 | 0.310 | 1.4e-71 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.766 | 0.707 | 0.313 | 1.3e-68 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.755 | 0.594 | 0.302 | 7.2e-68 | |
| TAIR|locus:2097365 | 721 | AT3G49710 "AT3G49710" [Arabido | 0.809 | 0.769 | 0.321 | 9.2e-68 | |
| TAIR|locus:2095289 | 1028 | AT3G09040 "AT3G09040" [Arabido | 0.736 | 0.491 | 0.325 | 4.4e-64 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.587 | 0.578 | 0.352 | 9.7e-64 | |
| TAIR|locus:2063771 | 689 | AT2G03380 [Arabidopsis thalian | 0.717 | 0.714 | 0.313 | 3.3e-63 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.686 | 0.572 | 0.332 | 6.9e-63 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.720 | 0.581 | 0.314 | 1.1e-62 |
| TAIR|locus:2025242 AT1G77010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
Identities = 208/376 (55%), Positives = 282/376 (75%)
Query: 45 NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND- 103
N ++ + + G + A LF+ MP ++ + N+++ G++ G+ E++L+LF + D
Sbjct: 128 NVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELNFSADA 187
Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
+ ++ A A+L AL+ GKQIH+ IL+ G++ DS + SSLVN+Y KCGD A+ +L
Sbjct: 188 ITLTTVLK--ACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYML 245
Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
++EPDD LSALISGYANCG++N++R +FDR ++ ++WNSMISGYI+NN EAL+
Sbjct: 246 EQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALV 305
Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
LF++MR N ED+ TLA+V++AC LGFLE GKQ+H HACK G+IDD++VAS LLD YS
Sbjct: 306 LFNEMR-NETREDSRTLAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYS 364
Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
K G P +ACKLFSE++ YDTILLN+MI VY SCGRI+DAK +F + NKSLISWNSM G
Sbjct: 365 KCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNG 424
Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
SQNG +E L+ F M+KLDL D+ SL+SVISACA+ISSLELGEQVFAR TI+GLDSD
Sbjct: 425 FSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSD 484
Query: 404 QIISTSLVDFYCKCGY 419
Q++S+SL+D YCKCG+
Sbjct: 485 QVVSSSLIDLYCKCGF 500
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
Identities = 181/582 (31%), Positives = 298/582 (51%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC----GNPTDALLLFDE 66
LL +C T S+ + +H +K G+ N+ ++ +L++ + G P A+ +F
Sbjct: 39 LLHNCKTLQSLRI---IHAQMIKIGLHNTNYALS-KLIEFCILSPHFEGLPY-AISVFKT 93
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALE 122
+ N WN M G +L+L+ M N +++ ++ AK+ A +
Sbjct: 94 IQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSK--AFK 151
Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
G+QIH H+L G D D + +SL+++Y + G A++V + D +ALI GYA
Sbjct: 152 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYA 211
Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
+ G + +A+++FD V WN+MISGY EAL LF M + V D ST+ +
Sbjct: 212 SRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 271
Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
V+SAC+ G +E G+QVH G ++ + +AL+D YSK G AC LF L D
Sbjct: 272 VVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKD 331
Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
I NT+I Y+ ++A +F+ M + ++ + + + A+D+ ++
Sbjct: 332 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 391
Query: 363 -LDLRM----DKFSL-ASVISACANISSLELGEQVFARVTIIGLDS-DQIISTSLVDFYC 415
+D R+ + SL S+I A +E QVF + L S + +I +
Sbjct: 392 YIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRA 451
Query: 416 KCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
+D LF+ MR G++P ITF +LSAC H G++ G+ F M Y + P++EH
Sbjct: 452 DASFD---LFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEH 508
Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
Y CM+DL +G EA +I M E D +W S+L+ C HG+ LG AE +I+++
Sbjct: 509 YGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIE 568
Query: 536 PENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
PEN +Y+ LS+I+A++G W + + R ++ +K + K+PGCS
Sbjct: 569 PENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCS 610
|
|
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 171/546 (31%), Positives = 281/546 (51%)
Query: 45 NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
N LL Y + G ++ F+++P R+ +WN +IEG+ G +++ +N M + DF
Sbjct: 76 NNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMR--DF 133
Query: 105 SWNML-ISGFAKADLAA----LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 159
S N+ ++ L++ + GKQIH ++ G + ++GS L+ +Y G + A
Sbjct: 134 SANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDA 193
Query: 160 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
+V + + + ++L+ G CG + DA ++F R + SV W +MI G N
Sbjct: 194 KKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLF-RGMEKDSVSWAAMIKGLAQNGLAK 252
Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
EA+ F +M+ G+ D SVL AC LG + GKQ+H + D + V SAL+
Sbjct: 253 EAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALI 312
Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
D Y K A +F +K + + M+ Y GR E+A IF M +S I +
Sbjct: 313 DMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDM-QRSGIDPDH 371
Query: 340 MIVGLS----QNGSPIEALDLFCNMNKLDLRMDKFSLA-SVISACANISSLELGEQVFAR 394
+G + N S +E F + +++ S+++ ++ ++F
Sbjct: 372 YTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNE 431
Query: 395 VTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
+ + D + T++V Y + G + + LF++M G+KP +T T ++SAC GL
Sbjct: 432 MNV----RDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGL 487
Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
V++GQ++F M +Y I P I HYSCM+DLF+R+G L EA+ I MPF D W+++L
Sbjct: 488 VEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLL 547
Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
C G+ +G+ AE +IELDP + Y LSSI+A+ G+W+ + +R MREK+V K
Sbjct: 548 SACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKK 607
Query: 573 LPGCSW 578
PG SW
Sbjct: 608 EPGQSW 613
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 163/538 (30%), Positives = 288/538 (53%)
Query: 55 GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA 114
G +L RN N+++ ++K + + ++F+ M +++ SWN +I+G+
Sbjct: 214 GEQLHGFILKSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYV 272
Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN--SANQVLNMM------ 166
LA E G + +LV+G++ D +++V+++ C D S + ++ +
Sbjct: 273 SNGLA--EKGLSVFVQMLVSGIEIDL---ATIVSVFAGCADSRLISLGRAVHSIGVKACF 327
Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
D FC + L+ Y+ CG ++ A+ VF +D S V + SMI+GY EA+ LF
Sbjct: 328 SREDRFC-NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFE 386
Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
+M G+ D T+ +VL+ C+ L+ GK+VH + + D+ V++AL+D Y+K G
Sbjct: 387 EMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG 446
Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
+A +FSE++V D I NT+I YS +A +F + + S + V
Sbjct: 447 SMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVL 506
Query: 347 NG-SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
+ + A D ++ +R FS V ++ ++ + + G + A + + S +
Sbjct: 507 PACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYA-KCGALLLAHMLFDDIASKDL 565
Query: 406 IS-TSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
+S T ++ Y G+ +A+ALFN+MR G++ I+F ++L AC H GLV EG ++F+
Sbjct: 566 VSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNI 625
Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
M+ + I+P +EHY+C+VD+ AR G L +A IE MP D +W ++L GC H D
Sbjct: 626 MRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVK 685
Query: 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
L KVAE++ EL+PEN Y+ +++I+A + +WE+ +R + ++ + K PGCSW +
Sbjct: 686 LAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIE 743
|
|
| TAIR|locus:2097365 AT3G49710 "AT3G49710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 190/591 (32%), Positives = 298/591 (50%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
LL+S + GK LH ++K + +ST ++N + +Y +CG + A F
Sbjct: 15 LLKSV-AERDLFTGKSLHALYVKSIVASSTY-LSNHFVNLYSKCGRLSYARAAFYSTEEP 72
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
N FS+N +++ + K + QLF+ +PQ + S+N LISG+A A AA+ K++
Sbjct: 73 NVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMR 132
Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF-----CLSALISGYAN 183
L F+ V G +L L C D + L+ F +A ++ Y+
Sbjct: 133 K------LGFE-VDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSK 185
Query: 184 CGKMNDARRVF---DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
G + +A VF D D V WNSMI Y + E +AL L+ +M G D TL
Sbjct: 186 GGLLREAVSVFYGMDELRD--EVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTL 243
Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS---DACKLFSE 297
ASVL+A +SL L G+Q HG K G + V S L+D YSK G D+ K+F E
Sbjct: 244 ASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQE 303
Query: 298 LKVYDTILLNTMITVYSSCGRI-EDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIE 352
+ D ++ NTMI+ YS + E+A FR M S+ + S SP +
Sbjct: 304 ILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQ 363
Query: 353 ALDLFCNMNKLDLRMDKFSLAS-VISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
+ K + ++ S+ + +IS +L+ VF R+ + + + ++
Sbjct: 364 CKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMP----ELNAVSFNCMI 419
Query: 412 DFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
Y + G+ +AL L+ M ++G+ P ITF A+LSAC HCG V EGQ++F+ MK + I
Sbjct: 420 KGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKI 479
Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
+PE EHYSCM+DL RAG L EA I+ MP++ W+++L C H + L + A
Sbjct: 480 EPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAN 539
Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
++ + P A Y+ L++++A + +WE+ + +R MR K + K PGCSW +
Sbjct: 540 ELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIE 590
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| TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 4.4e-64, P = 4.4e-64
Identities = 170/523 (32%), Positives = 281/523 (53%)
Query: 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD--LAALEYGKQI 127
+N F NA+++ + K G E + Q+F M +++ +WN +I + + + A + K++
Sbjct: 461 KNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRM 520
Query: 128 H-SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
+ I+ +G S L + +++G + + D S+LI Y+ CG
Sbjct: 521 NLCGIVSDGACLASTL-KACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGI 579
Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
+ DAR+VF + S V N++I+GY NN + EA++LF +M GV T A+++ A
Sbjct: 580 IKDARKVFSSLPEWSVVSMNALIAGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATIVEA 638
Query: 247 CSSLGFLEHGKQVHGHACKVGVIDD-VIVASALLDTY-SKRGMPSDACKLFSELKVYDTI 304
C L G Q HG K G + + +LL Y + RGM ++AC LFSEL +I
Sbjct: 639 CHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGM-TEACALFSELSSPKSI 697
Query: 305 LLNT-MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
+L T M++ +S G E+A ++ M + ++ + V + + S + +L ++ L
Sbjct: 698 VLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSL 757
Query: 364 DLRM----DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
+ D+ + ++I A ++ QVF + S+ + SL++ Y K GY
Sbjct: 758 IFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMR---RRSNVVSWNSLINGYAKNGY 814
Query: 420 --DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
DAL +F+ MR + + P ITF +L+AC H G V +G+K F+ M QY I+ ++H +
Sbjct: 815 AEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVA 874
Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
CMVDL R G L EA + IE + D +WSS+L C HGD G AE++IEL+P+
Sbjct: 875 CMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQ 934
Query: 538 NACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
N+ AY+ LS+I+A+ G WEK++ +R +MR++ V K+PG SW D
Sbjct: 935 NSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWID 977
|
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| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 150/426 (35%), Positives = 241/426 (56%)
Query: 9 ARLLQSC--NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
A+LL SC + +I+V + +H +K G N I NRL+ Y +CG+ D +FD+
Sbjct: 23 AKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIF-IQNRLIDAYSKCGSLEDGRQVFDK 80
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLA--ALEYG 124
MP+RN ++WN+++ G KLG +++ LF MP+++ +WN ++SGFA+ D AL Y
Sbjct: 81 MPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYF 140
Query: 125 KQIHSH-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM-KEP---DDFCLSALIS 179
+H ++N F SVL S+ L D N QV +++ K P D + SAL+
Sbjct: 141 AMMHKEGFVLNEYSFASVL-SACSGL----NDMNKGVQVHSLIAKSPFLSDVYIGSALVD 195
Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
Y+ CG +NDA+RVFD D + V WNS+I+ + N EAL +F M + V D T
Sbjct: 196 MYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVT 255
Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSEL 298
LASV+SAC+SL ++ G++VHG K + +D+I+++A +D Y+K +A +F +
Sbjct: 256 LASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSM 315
Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
+ + I +MI+ Y+ + A+ +F M ++++SWN++I G +QNG EAL LFC
Sbjct: 316 PIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC 375
Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLVD 412
+ + + +S A+++ ACA+++ L LG Q V G + D + SL+D
Sbjct: 376 LLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLID 435
Query: 413 FYCKCG 418
Y KCG
Sbjct: 436 MYVKCG 441
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| TAIR|locus:2063771 AT2G03380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 161/513 (31%), Positives = 278/513 (54%)
Query: 78 MIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
+++ + K G + + ++FN + +N W +I+G+ K DL E G +L N +
Sbjct: 182 LLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLC--EEGL-----VLFNRMR 234
Query: 138 FDSVLGSSLV--NLYGKCGDFNSANQVL----NMMKEPDDF--CL-SALISGYANCGKMN 188
++VLG+ L C ++ +Q ++K + CL ++L+ Y CG ++
Sbjct: 235 ENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDIS 294
Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
+ARRVF+ + VMW +MI GY N EAL LF KM+ + + T+ASVLS C
Sbjct: 295 NARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCG 354
Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
+ LE G+ VHG + KVG+ D VA+AL+ Y+K DA +F D + N+
Sbjct: 355 LIENLELGRSVHGLSIKVGIWD-TNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNS 413
Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
+I+ +S G I +A +F M ++S+ + L + + +L + +++ +++
Sbjct: 414 IISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLG 473
Query: 369 KFSLASVISACANISSL-ELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCG--YDALAL 424
+ +SV A + + G+ AR+ ++ I+ S ++ Y K G +L L
Sbjct: 474 FLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLEL 533
Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
F EM KP TFT+ILSAC H G+V EG+K+F +M Y+ P +HY+CMVD+ A
Sbjct: 534 FEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLA 593
Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544
RAG L +A+++IE+MP + DV + + L GC H LG V ++M++L P++A Y+
Sbjct: 594 RAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVL 653
Query: 545 LSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
+S+++A+ G W ++ +R++M+++ + K+ G S
Sbjct: 654 VSNLYASDGRWNQAKEVRNLMKQRGLSKIAGHS 686
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| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 166/499 (33%), Positives = 264/499 (52%)
Query: 94 LFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD-FDSVLGSSLVNLYGK 152
LF+ MP ++ SWN +ISG+ ++ G + L NGL DSV SL++ +
Sbjct: 207 LFDEMPVRDMGSWNAMISGYCQS-------GNAKEALTLSNGLRAMDSVTVVSLLSACTE 259
Query: 153 CGDFNSANQVLNM-MK---EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 208
GDFN + + +K E + F + LI YA G++ D ++VFDR + WNS+
Sbjct: 260 AGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSI 319
Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG- 267
I Y N + A+ LF +MR + + D TL S+ S S LG + + V G + G
Sbjct: 320 IKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGW 379
Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
++D+ + +A++ Y+K G+ A +F+ L D I NT+I+ Y+ G +A ++
Sbjct: 380 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYN 439
Query: 328 TMPNKSLIS-----WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF---SLASVISAC 379
M + I+ W S++ SQ G+ + + L + K L +D F SLA + C
Sbjct: 440 IMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKC 499
Query: 380 ANIS-SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTII 438
+ +L L Q+ RV + ++ +I+ F+ G A+ LF EM + GVKP I
Sbjct: 500 GRLEDALSLFYQI-PRVNSVPWNT--LIACH--GFHGH-GEKAVMLFKEMLDEGVKPDHI 553
Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
TF +LSAC H GLV EGQ F+ M+ Y I P ++HY CMVD++ RAG L A+ I+
Sbjct: 554 TFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKS 613
Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
M + D +W ++L C HG+ LG+ +E + E++PE+ ++ LS+++A++G+WE
Sbjct: 614 MSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGV 673
Query: 559 SLIRDIMREKHVGKLPGCS 577
IR I K + K PG S
Sbjct: 674 DEIRSIAHGKGLRKTPGWS 692
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| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 164/522 (31%), Positives = 279/522 (53%)
Query: 77 AMIEGFMKLGHK-EKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
++I+ F+K + E + ++F+ M + N +W ++I+ + + ++++G
Sbjct: 207 SLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFP--REAIRFFLDMVLSG 264
Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP---DDFCLSALISGYANC---GKMND 189
+ D SS+ + + + + Q+ + DD S L+ YA C G ++D
Sbjct: 265 FESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECS-LVDMYAKCSADGSVDD 323
Query: 190 ARRVFDRTTDTSSVMWNSMISGYISN-NEDTEALLLFHKMRRNGVLE-DASTLASVLSAC 247
R+VFDR D S + W ++I+GY+ N N TEA+ LF +M G +E + T +S AC
Sbjct: 324 CRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383
Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
+L GKQV G A K G+ + VA++++ + K DA + F L + + N
Sbjct: 384 GNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYN 443
Query: 308 TMITVYSSCGRI--EDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMN 361
T + +C + E A + + + L ++ S++ G++ GS + + +
Sbjct: 444 TFLD--GTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVV 501
Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS-TSLVDFYCKCGYD 420
KL L ++ ++IS + S++ +VF +++ +IS TS++ + K G+
Sbjct: 502 KLGLSCNQPVCNALISMYSKCGSIDTASRVFNF-----MENRNVISWTSMITGFAKHGFA 556
Query: 421 --ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
L FN+M GVKP +T+ AILSAC H GLV EG + F++M + I P++EHY+C
Sbjct: 557 IRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYAC 616
Query: 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
MVDL RAG L +A I MPF+ADV +W + L C H + LG+ A +++ELDP
Sbjct: 617 MVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNE 676
Query: 539 ACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
AYIQLS+I+A +G+WE+S+ +R M+E+++ K GCSW +
Sbjct: 677 PAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIE 718
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O49287 | PP127_ARATH | No assigned EC number | 0.5104 | 0.8352 | 0.8244 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00020700 | hypothetical protein (681 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 686 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-108 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-80 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-59 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-32 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-22 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 348 bits (895), Expect = e-108
Identities = 188/604 (31%), Positives = 295/604 (48%), Gaps = 98/604 (16%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
+L++C + G+++H H ++ G + + N L+ MY++CG+ A L+FD MPRR
Sbjct: 193 VLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPRR 251
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD--LAALEYGKQIH 128
+C SWNAMI G+ + G + L+LF M + + M I+ A L G+++H
Sbjct: 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311
Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
+++ G D + +SL+ + Y + G
Sbjct: 312 GYVVKTGFAVDVSVCNSLIQM-------------------------------YLSLGSWG 340
Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
+A +VF R +V W +MISGY N +AL + M ++ V D T+ASVLSAC+
Sbjct: 341 EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400
Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
LG L+ G ++H A + G+I V+VA+AL++ YSK
Sbjct: 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK------------------------ 436
Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
C I+ A +F +P K +ISW S+I GL N EAL F M L L+ +
Sbjct: 437 -------CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPN 488
Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD-------- 420
+L + +SACA I +L G+++ A V G+ D + +L+D Y +CG
Sbjct: 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548
Query: 421 ------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
A+ LFN M +GV P +TF ++L AC G+V +G
Sbjct: 549 SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608
Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
++F +M+ +Y I P ++HY+C+VDL RAG L EA N I +MP D +W ++L C
Sbjct: 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACR 668
Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
H LG A+ + ELDP + YI L +++A +G+W++ + +R MRE + PGC
Sbjct: 669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGC 728
Query: 577 SWAD 580
SW +
Sbjct: 729 SWVE 732
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 269 bits (688), Expect = 3e-80
Identities = 131/444 (29%), Positives = 215/444 (48%), Gaps = 64/444 (14%)
Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
EPD + ++ ++ + CG + DARR+FD + + W ++I G + EA LF +
Sbjct: 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFRE 214
Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
M +G + T +L A + LG G+Q+H K GV+ D V+ AL+D YSK
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK--- 271
Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
CG IEDA+ +F MP K+ ++WNSM+ G + +
Sbjct: 272 ----------------------------CGDIEDARCVFDGMPEKTTVAWNSMLAGYALH 303
Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
G EAL L+ M + +D+F+ + +I + ++ LE +Q A + G D + +
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363
Query: 408 TSLVDFYCK--------------------------CGY-------DALALFNEMRNTGVK 434
T+LVD Y K GY A+ +F M GV
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423
Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
P +TF A+LSAC + GL ++G + F +M + I P HY+CM++L R G L+EA
Sbjct: 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483
Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
+I + PF+ V MW+++L C H + LGR AE++ + PE Y+ L +++ +SG
Sbjct: 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543
Query: 555 WEKSSLIRDIMREKHVGKLPGCSW 578
+++ + + ++ K + P C+W
Sbjct: 544 QAEAAKVVETLKRKGLSMHPACTW 567
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 8e-59
Identities = 152/534 (28%), Positives = 240/534 (44%), Gaps = 109/534 (20%)
Query: 41 LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-- 98
+ + N +L M++R G A +F +MP R+ FSWN ++ G+ K G+ +++L L++ M
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 99 ----PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
P F +L + DLA G+++H+H++ G + D + ++L+ +Y KCG
Sbjct: 181 AGVRPDVYTFP-CVLRTCGGIPDLAR---GREVHAHVVRFGFELDVDVVNALITMYVKCG 236
Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
D SA R VFDR + WN+MISGY
Sbjct: 237 DVVSA-------------------------------RLVFDRMPRRDCISWNAMISGYFE 265
Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
N E E L LF MR V D T+ SV+SAC LG G+++HG+ K G DV V
Sbjct: 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325
Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
N++I +Y S G +A+ +F M K
Sbjct: 326 C-------------------------------NSLIQMYLSLGSWGEAEKVFSRMETKDA 354
Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
+SW +MI G +NG P +AL+ + M + ++ D+ ++ASV+SACA + L++G ++
Sbjct: 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414
Query: 395 VTIIGLDSDQIISTSLVDFYCKC---------------------------------GYDA 421
GL S +++ +L++ Y KC ++A
Sbjct: 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474
Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
L F +M T +KP +T A LSAC G + G K A + I + + ++D
Sbjct: 475 LIFFRQMLLT-LKPNSVTLIAALSACARIGALMCG-KEIHAHVLRTGIGFDGFLPNALLD 532
Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
L+ R G +N A N E DV W+ +L G VAHG + ++ RM+E
Sbjct: 533 LYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 2e-32
Identities = 98/359 (27%), Positives = 164/359 (45%), Gaps = 82/359 (22%)
Query: 20 SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
S G+QLH LK G++ T ++ L+ MY +CG+ DA +FD MP + +WN+M+
Sbjct: 239 SARAGQQLHCCVLKTGVVGDTF-VSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSML 297
Query: 80 EGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
G+ G+ E++L L+ M + F+++++I F++ LA LE+ KQ H+ ++ G
Sbjct: 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR--LALLEHAKQAHAGLIRTG 355
Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 195
D V ++LV+LY K G+M DAR VFD
Sbjct: 356 FPLDIVANTALVDLYSK-------------------------------WGRMEDARNVFD 384
Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
R + + WN++I+GY ++ T+A+ +F +M GV + T +VLSAC G E
Sbjct: 385 RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444
Query: 256 GK-------QVHG-------HACKV------GVIDD---VIVASALLDTYSKRGMPSDAC 292
G + H +AC + G++D+ +I + T + AC
Sbjct: 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC 504
Query: 293 KL--------FSELKVYD---------TILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
++ + K+Y +LLN +Y+S GR +A + T+ K L
Sbjct: 505 RIHKNLELGRLAAEKLYGMGPEKLNNYVVLLN----LYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 4e-22
Identities = 102/422 (24%), Positives = 164/422 (38%), Gaps = 87/422 (20%)
Query: 193 VFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSL 250
D T S V S I ++ EAL LF + AST +++ AC +L
Sbjct: 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL 136
Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
+ K V+ H G D + + +L + K GM DA +LF E
Sbjct: 137 KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE------------- 183
Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
MP ++L SW ++I GL G+ EA LF M + +
Sbjct: 184 ------------------MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225
Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------- 419
+ ++ A A + S G+Q+ V G+ D +S +L+D Y KCG
Sbjct: 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285
Query: 420 ----------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
+AL L+ EMR++GV TF+ ++ L+ E
Sbjct: 286 PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL-EHA 344
Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
K A + +I + +VDL+++ G + +A N+ ++MP + ++ W++++ G
Sbjct: 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGN 403
Query: 518 HGDKGLGRKVAERMIE----------LDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
HG ++ ERMI L +AC Y SG E+ I M E
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY---------SGLSEQGWEIFQSMSE 454
Query: 568 KH 569
H
Sbjct: 455 NH 456
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 1e-19
Identities = 86/392 (21%), Positives = 152/392 (38%), Gaps = 74/392 (18%)
Query: 181 YANCGKMNDARRVFDRTTDTSSVMW-NSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
Y N +R + + +SS NS + S+ + +AL L M+ V D
Sbjct: 29 YWNFHGRKRSRGLSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDA 88
Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
++ C +E G +V A L ++ G+
Sbjct: 89 YVALFRLCEWKRAVEEGSRVCSRA---------------LSSHPSLGVR----------- 122
Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
L N M++++ G + A ++F MP + L SWN ++ G ++ G EAL L+
Sbjct: 123 -----LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHR 177
Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
M +R D ++ V+ C I L G +V A V G + D + +L+ Y KCG
Sbjct: 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237
Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
+ L LF MR V P ++T T+++SA
Sbjct: 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA 297
Query: 447 CDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
C+ G + G++ +K + +D + + ++ ++ G EA + +M + D
Sbjct: 298 CELLGDERLGREMHGYVVKTGFAVD--VSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DA 354
Query: 506 GMWSSILRGCVAHGDKGLGRKVAE--RMIELD 535
W++++ G GL K E ++E D
Sbjct: 355 VSWTAMISGYE---KNGLPDKALETYALMEQD 383
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 4e-07
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAK 115
+ ++N +I+G+ K G E++L+LFN M ++ N +++++LI G K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 5e-07
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 408 TSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSAC 447
+L+D YCK G +AL LFNEM+ G+KP + T++ ++
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 6e-06
Identities = 86/431 (19%), Positives = 192/431 (44%), Gaps = 37/431 (8%)
Query: 45 NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG-FMKLGHKEKSLQ----LFNVMP 99
NRLL R G D + L ++M +R + + F K K+++++ ++
Sbjct: 378 NRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433
Query: 100 QKNDFSWNMLISGFAKA-DLA-ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
++NML+S A + D+ AL + + GL D L ++L++ K G +
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQE----AGLKADCKLYTTLISTCAKSGKVD 489
Query: 158 SANQVLNMMK----EPDDFCLSALISGYANCGKMNDARRVF----DRTTDTSSVMWNSMI 209
+ +V + M E + ALI G A G++ A + + V++N++I
Sbjct: 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549
Query: 210 SGYISNNEDTEALLLFHKMRRNG--VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
S + A + +M+ + D T+ +++ AC++ G ++ K+V+ +
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDAK 323
+ V + +++ S++G A ++ ++K D + + ++ V G ++ A
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669
Query: 324 HIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
I + + + +S++S++ S + +AL+L+ ++ + LR ++ ++I+A
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDA---LALFNEMRNTGVKPT 436
+ L +V + + +GL + I + S++ + DA L L ++ + G+KP
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTI-TYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
Query: 437 IITFTAILSAC 447
++ I C
Sbjct: 789 LVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
V +N++I GY + EAL LF++M++ G+ + T + ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
V +NS+ISGY + EAL LF +M+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 45 NRLLQMYMRCGNPTDALLLFDEMPRRNC----FSWNAMIEGFMK 84
N L+ Y + G +AL LF+EM +R ++++ +I+G K
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 5e-04
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
++++N++I G + G EAL LF M K ++ + ++ + +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
V +N++I G EAL LF +M+ G+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
+++NS+I G + G EAL+LF M + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 686 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.68 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.57 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.57 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.55 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.55 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.54 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.52 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.51 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.5 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.46 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.4 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.39 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.38 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.37 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.35 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.33 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.33 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.31 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.31 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.3 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.28 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.27 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.26 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.21 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.2 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.19 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.18 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.17 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.14 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.12 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.12 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.11 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.09 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.08 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.06 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.05 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.05 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.02 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.02 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.02 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.0 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.96 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.95 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.94 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.91 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.88 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.87 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.86 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.85 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.83 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.77 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.75 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.75 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.71 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.68 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.68 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.67 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.67 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.65 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.61 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.6 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.6 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.51 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.49 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.45 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.43 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.42 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.41 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.35 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.34 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.33 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.28 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.28 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.27 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.26 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.25 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.23 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.22 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.22 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.21 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.21 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.2 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.2 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.18 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.14 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.13 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.06 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.05 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.03 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.01 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.99 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.99 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.98 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.98 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.96 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.95 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.93 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.93 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.9 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.88 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.85 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.83 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.83 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.83 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.82 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.81 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.8 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.78 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.72 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.71 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.65 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.63 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.62 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.55 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.54 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.53 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.46 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.45 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.44 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.43 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.43 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.42 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.42 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.41 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.41 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.39 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.39 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.37 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.35 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.32 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.3 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.29 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.27 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.26 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.22 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.19 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.16 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.11 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.1 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.1 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.1 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.09 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.09 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.06 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.05 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.03 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.02 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.99 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.97 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.96 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.96 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.93 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.86 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.85 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.84 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.77 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.74 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.73 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.71 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.7 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.69 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.65 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.64 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.6 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.56 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.47 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.45 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.42 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.37 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.3 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.23 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.16 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.99 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.84 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.79 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.74 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.73 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.7 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.61 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.61 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.6 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.54 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.52 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.49 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.37 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.2 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.12 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.1 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.01 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.88 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.84 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.82 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.8 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.76 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.68 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.54 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.37 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.34 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.34 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.26 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.25 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.1 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.01 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.87 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.81 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.79 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.72 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.69 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.67 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.47 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.47 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.37 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.25 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.03 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.95 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.93 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.75 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.53 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.36 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.31 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.76 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.38 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.27 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.17 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.17 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.11 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.41 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.28 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.24 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 90.06 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.95 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.87 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.8 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.79 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.67 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.12 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.09 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 88.57 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 88.57 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 88.34 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.13 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.12 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 88.03 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.94 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.93 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.9 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.88 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.57 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.46 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.4 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.29 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.14 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 87.1 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.01 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.85 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.56 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.5 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.44 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.87 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 85.83 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.46 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.75 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.72 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 84.5 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 83.86 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.71 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 83.68 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.63 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.4 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.3 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 82.92 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 82.91 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.88 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.6 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.6 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 82.26 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.06 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.05 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 81.08 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.0 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.0 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.68 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.58 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.22 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 80.06 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-79 Score=693.89 Aligned_cols=578 Identities=30% Similarity=0.534 Sum_probs=474.9
Q ss_pred CchhHHHHHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCCChhhHHHHHHH
Q 005642 2 DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81 (686)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 81 (686)
.|+..+|..++++|...+.+..+.++|..+.+.|..++.. ++|.|+.+|+++|+++.|.++|++|++||..+||.+|.+
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~ 161 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR-LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGG 161 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCch-HHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHH
Confidence 4667789999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhhCCC----CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 005642 82 FMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157 (686)
Q Consensus 82 ~~~~g~~~~A~~~~~~m~~----~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 157 (686)
|++.|++++|+++|++|.+ ||..||+.++++|+.. +++..+.+++..+.+.|+.||..++|+|+.+|++.|+++
T Consensus 162 ~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 239 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI--PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCc--cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHH
Confidence 9999999999999999964 9999999999999987 789999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCC--------------------------------------
Q 005642 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD-------------------------------------- 199 (686)
Q Consensus 158 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------------------------- 199 (686)
+|.++|++|.+||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 240 ~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 999999999988888888888888777777777777665521
Q ss_pred -CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHH
Q 005642 200 -TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278 (686)
Q Consensus 200 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 278 (686)
+|..+||+||.+|++.|++++|.++|++|. .||..+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 234455555566666666666666666653 355566666666666666666666666666666666666666666
Q ss_pred HHHHHhcCChhHHHHHHHhcc----cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHH
Q 005642 279 LDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354 (686)
Q Consensus 279 ~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 354 (686)
+.+|++.|+++.|.++++.+. .++..+++.|+.+|++.|++++|.++|++|.++|+++|+.+|.+|++.|+.++|+
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHH
Confidence 666666666666666666555 3455566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC------------------------------cch
Q 005642 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD------------------------------SDQ 404 (686)
Q Consensus 355 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------------------------~~~ 404 (686)
.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+. +|.
T Consensus 476 ~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~ 554 (857)
T PLN03077 476 IFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDV 554 (857)
T ss_pred HHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCCh
Confidence 66666654 35666666666666666666666666666666555554 455
Q ss_pred hHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005642 405 IISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482 (686)
Q Consensus 405 ~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 482 (686)
.+|++++.+|++.|+ +|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+..|+.|+..+|++++++
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 556666666666665 999999999999999999999999999999999999999999999778999999999999999
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHH
Q 005642 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562 (686)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 562 (686)
|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.|+.+.+++++++|+++..|..++++|...|+|++|.+++
T Consensus 635 l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 635 LGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred HHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCccceeeccccce
Q 005642 563 DIMREKHVGKLPGCSWADGIAFNCW 587 (686)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (686)
+.|+++|++++||++|+++-+..+.
T Consensus 715 ~~M~~~g~~k~~g~s~ie~~~~~~~ 739 (857)
T PLN03077 715 KTMRENGLTVDPGCSWVEVKGKVHA 739 (857)
T ss_pred HHHHHcCCCCCCCccEEEECCEEEE
Confidence 9999999999999999998775443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=622.26 Aligned_cols=581 Identities=22% Similarity=0.290 Sum_probs=528.1
Q ss_pred chhHHHHHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCC----CCChhhHHHH
Q 005642 3 TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP----RRNCFSWNAM 78 (686)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l 78 (686)
++++++..+++++.+.|.+.+|..++..|.+.|+.|+.. ++..++..+.+.+.++.|.++++.+. .++...+|.|
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDED-AYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 467788999999999999999999999999999999999 99999999999999999999998765 3678899999
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 005642 79 IEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158 (686)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 158 (686)
+..|++.|+++.|+++|++|.+||..+|+.+|.+|++. +.++.|..+++.|...|+.||..+|+.++.++++.+++..
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~--g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKA--GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred HHHHHhccC----CCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 005642 159 ANQVLNMMK----EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234 (686)
Q Consensus 159 A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 234 (686)
+.+++..+. .||..+++.++.+|++.|++++|.++|++|+++|..+||++|.+|++.|++++|+++|++|.+.|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999998887 4899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHH
Q 005642 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314 (686)
Q Consensus 235 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 314 (686)
||..||+.++.+|.+.|+++.+.+++..+.+.|+.||..+|+.|+.+|+++|++++|.++|++|..+|..+|+.++.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHhhCCC----CCch-----------------------------------hHHHHHHHHHhCCChhhHHH
Q 005642 315 SCGRIEDAKHIFRTMPN----KSLI-----------------------------------SWNSMIVGLSQNGSPIEALD 355 (686)
Q Consensus 315 ~~g~~~~A~~~~~~~~~----~~~~-----------------------------------~~~~li~~~~~~g~~~~A~~ 355 (686)
+.|++++|.++|++|.+ ||.. +|+.++.+|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998842 4444 45556666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh-------------------
Q 005642 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK------------------- 416 (686)
Q Consensus 356 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~------------------- 416 (686)
+|++|. .+|..+|+.++.+|++.|+.++|..+|++|.+ ++.||..+|+.++.+|++
T Consensus 446 vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 446 VFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 666664 46889999999999999999999999999986 589999988776655544
Q ss_pred ----------------chh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 005642 417 ----------------CGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478 (686)
Q Consensus 417 ----------------~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 478 (686)
+|+ +|.++|+++ .||..+|+++|.+|+++|+.++|.++|++|. +.|+.||..||+.
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ 594 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMV-ESGVNPDEVTFIS 594 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCcccHHH
Confidence 444 666666665 5789999999999999999999999999999 5799999999999
Q ss_pred HHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCC
Q 005642 479 MVDLFARAGCLNEAVNLIEQM----PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554 (686)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 554 (686)
++.+|.+.|.+++|.++|++| ++.|+..+|+++++++.+.|++++|.+++++|. ..| ++.+|..|+.+|...|+
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~p-d~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITP-DPAVWGALLNACRIHRH 672 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCC
Confidence 999999999999999999998 378999999999999999999999999999984 677 56789999999999999
Q ss_pred cchHHHHHHHHHhcCCCCCCCccceeeccccceeehhhhhhhhcHHHHh
Q 005642 555 WEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDTMFLQLANFDEIK 603 (686)
Q Consensus 555 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (686)
.+.+....+++.+ .+|.....++...+.|...+.|+++.+.++..
T Consensus 673 ~e~~e~~a~~l~~----l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 673 VELGELAAQHIFE----LDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred hHHHHHHHHHHHh----hCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 9999999888876 34555666777778888888898888887633
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=576.02 Aligned_cols=481 Identities=26% Similarity=0.464 Sum_probs=459.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHH
Q 005642 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGS 144 (686)
Q Consensus 70 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 144 (686)
++..+|+.+|.++.+.|++++|+++|+.|.. ||..+|+.++.+|++. ++.+.+.+++..|.+.|+.||..+|+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 4667899999999999999999999999963 6788999999999987 67889999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 005642 145 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224 (686)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 224 (686)
.++.+|++.|++++|.++|++|.+|| ..+||++|.+|++.|++++|+++
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~-------------------------------~~t~n~li~~~~~~g~~~~A~~l 211 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERN-------------------------------LASWGTIIGGLVDAGNYREAFAL 211 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCC-------------------------------eeeHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999998888777 88899999999999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCch
Q 005642 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304 (686)
Q Consensus 225 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 304 (686)
|++|.+.|+.|+..||..++.+|.+.|..+.+.+++..+.+.|+.||..+++.|+++|+++|++++|.++|++|.++|..
T Consensus 212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~v 291 (697)
T PLN03081 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV 291 (697)
T ss_pred HHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHhhCC----CCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005642 305 LLNTMITVYSSCGRIEDAKHIFRTMP----NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380 (686)
Q Consensus 305 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 380 (686)
+||.++.+|++.|+.++|.++|++|. .||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 99999999999999999999999995 47999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 005642 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458 (686)
Q Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 458 (686)
+.|++++|.++|++|. .||..+|++||.+|++.|+ +|+++|++|.+.|+.||..||++++.+|++.|++++|.+
T Consensus 372 k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 372 KWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 9999999999999985 4789999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 459 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
+|+.|.+..|+.|+..+|++++++|++.|++++|.+++++++..|+..+|++++.+|+.+|+++.|..++++++++.|++
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 99999877899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCccceeeccccce
Q 005642 539 ACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCW 587 (686)
Q Consensus 539 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (686)
...|..++++|++.|+|++|.++++.|+++|+++.|+++|+++....+.
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~ 576 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHS 576 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEE
Confidence 9999999999999999999999999999999999999999998765443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=545.12 Aligned_cols=513 Identities=13% Similarity=0.176 Sum_probs=338.1
Q ss_pred hHHHHHHHHHhhccCccchhhHHHHHHHHhCC-CCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCCChhhHHHHHHHHH
Q 005642 5 IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83 (686)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 83 (686)
...+..++..|.+.|++.+|.++++.|.+.|+ .++.. .++.++..|.+.|.+++|..+|+.|..||..+|+.++.+|+
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v-~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI-YHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHH-HHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45566666666666777777777777776664 33444 56666666666777777777777776677777777777777
Q ss_pred hcCCHHHHHHHHhhCCC----CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 005642 84 KLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 159 (686)
Q Consensus 84 ~~g~~~~A~~~~~~m~~----~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 159 (686)
+.|++++|.++|+.|.+ ||..+|+.+|.+|++. ++++.|.++++.|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~--G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS--GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 77777777777776654 6666777777777766 56667777777777777777777777777777777777777
Q ss_pred HHHHhccC----CCChhhHHHHHHHHHccCCHHHHHHHHhhcC------CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 005642 160 NQVLNMMK----EPDDFCLSALISGYANCGKMNDARRVFDRTT------DTSSVMWNSMISGYISNNEDTEALLLFHKMR 229 (686)
Q Consensus 160 ~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (686)
.++|++|. .||..+|+.+|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77776665 3666777777777777777777777776663 3566677777777777777777777777777
Q ss_pred HCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc----cCCchh
Q 005642 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK----VYDTIL 305 (686)
Q Consensus 230 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~ 305 (686)
+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++++|++.|++++|.++|++|. .||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 7777777777777777777777777777777777777777777777777777777777777777777665 456667
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCC----CCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 005642 306 LNTMITVYSSCGRIEDAKHIFRTMP----NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381 (686)
Q Consensus 306 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 381 (686)
|+.+|.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 7777777777777777777777663 366667777777777777777777777777766777777777777777777
Q ss_pred cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005642 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461 (686)
Q Consensus 382 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 461 (686)
.|+++.|.++|.+|.+.|+.||..+|++++.++.+.-++|..+.+.+.. |+. .......+..++|..+|+
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~---------f~~-g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVS---------FDS-GRPQIENKWTSWALMVYR 836 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhh---------hhc-cccccccchHHHHHHHHH
Confidence 7777777777777777777777777777665433211112111111110 000 000011122356777777
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 462 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
+|. +.|+.||..+|+.++.++++.+..+.+..+++.+. ..|+..+|+++++++.+. .++|..++++|.+
T Consensus 837 eM~-~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 837 ETI-SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHH-HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 777 45777777777777777767777777777777764 445566777777776332 3567777777777
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-62 Score=538.82 Aligned_cols=521 Identities=16% Similarity=0.216 Sum_probs=380.4
Q ss_pred CCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHH
Q 005642 37 LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN-----CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLIS 111 (686)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~ 111 (686)
.++.. .|..++..|++.|++++|.++|++|++++ ...++.++.+|.+.|.+++|+.+|+.|..||..+|+.+|.
T Consensus 367 ~~~~~-~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSP-EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCch-HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34444 88999999999999999999999998654 4566778888999999999999999999999999999999
Q ss_pred HHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccC----CCChhhHHHHHHHHHccCCH
Q 005642 112 GFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK----EPDDFCLSALISGYANCGKM 187 (686)
Q Consensus 112 ~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~ 187 (686)
+|++. ++++.|.++++.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++
T Consensus 446 a~~k~--g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 446 VCASS--QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHhC--cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99998 7899999999999999999999999999999999999999999999998 48888888888888888888
Q ss_pred HHHHHHHhhcC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCcCHHHHHHHHHHHHccCChhhHHHHHH
Q 005642 188 NDARRVFDRTT----DTSSVMWNSMISGYISNNEDTEALLLFHKMRR--NGVLEDASTLASVLSACSSLGFLEHGKQVHG 261 (686)
Q Consensus 188 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 261 (686)
++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888887774 36778888888888888888888888888865 5678888888888888888888888888888
Q ss_pred HHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc----cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC----CC
Q 005642 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----KS 333 (686)
Q Consensus 262 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~ 333 (686)
.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+ ||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888888776 34555555555555555555555555555542 34
Q ss_pred chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 005642 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413 (686)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 413 (686)
..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005642 414 YCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491 (686)
Q Consensus 414 ~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (686)
|++.|+ +|.++|.+|.+.|+.||..+|+.++..|. ++++++.++.+.+. ... + .......+..++
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~-~f~--~--------g~~~~~n~w~~~ 830 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVV-SFD--S--------GRPQIENKWTSW 830 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhh-hhh--c--------cccccccchHHH
Confidence 555554 55555555555555555555555554332 13334433333222 000 0 000111233567
Q ss_pred HHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc-cCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 492 AVNLIEQM---PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE-LDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 492 A~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
|..+|++| ++.||..+|+.++.++...+..+.+..+++.+.. -.+.+..+|..++..+.+. .++|..++++|.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 99999999 4899999999999888888889988888877654 2334667899999987322 3689999999999
Q ss_pred cCCCCCCC
Q 005642 568 KHVGKLPG 575 (686)
Q Consensus 568 ~~~~~~~~ 575 (686)
.|+.++..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 99876554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=519.04 Aligned_cols=455 Identities=24% Similarity=0.392 Sum_probs=427.4
Q ss_pred HHHHHHHHHhhccCccchhhHHHHHHHHhC-CCCCchhhHHHHHHHHHhcCCcHHHHHHhccCC----CCChhhHHHHHH
Q 005642 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP----RRNCFSWNAMIE 80 (686)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~ 80 (686)
..+..++.++...|++.+|.+++..|...+ +.|+.. +|+.++.++.+.++++.|.+++..|. .||..+||.|+.
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~-t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPAS-TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 478899999999999999999999999875 678888 99999999999999999999999987 479999999999
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005642 81 GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160 (686)
Q Consensus 81 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 160 (686)
+|++.|++++|.++|++|.+||..+|++++.+|++. ++++.|..+++.|.+.|+.||..+|+.++.++++.|+.+.+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~--g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDA--GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHC--cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 999999999999999999999999999999999998 789999999999999999999999999999999999999999
Q ss_pred HHHhccC----CCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC
Q 005642 161 QVLNMMK----EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236 (686)
Q Consensus 161 ~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 236 (686)
+++..+. .+|..+|+.++.+|++.|++++|.++|++|.++|+.+||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9988776 489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhC
Q 005642 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316 (686)
Q Consensus 237 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 316 (686)
..||+.++.+|++.|+++.|.++++.|.+.|+.||..+++.|+++|+++|++++|.++|+
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~-------------------- 384 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD-------------------- 384 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH--------------------
Confidence 999999999999999999999999999999999999999999999999999998888887
Q ss_pred CCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 005642 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396 (686)
Q Consensus 317 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 396 (686)
+|.++|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.
T Consensus 385 -----------~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 385 -----------RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred -----------hCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 667789999999999999999999999999999999999999999999999999999999999999997
Q ss_pred H-hCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-C
Q 005642 397 I-IGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-E 472 (686)
Q Consensus 397 ~-~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~ 472 (686)
+ .|+.|+..+|++++++|++.|+ +|.+++++| ++.|+..+|++|+.+|..+|+++.|..+++++. ++.| +
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~---~~~p~~ 527 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY---GMGPEK 527 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---CCCCCC
Confidence 6 6889999999999999999987 888888766 678899999999999999999999999988876 5667 4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQMP 500 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (686)
..+|..|+++|++.|++++|.++++.|+
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7788999999999999999999998883
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=313.45 Aligned_cols=547 Identities=12% Similarity=0.058 Sum_probs=456.7
Q ss_pred HHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCC---CChhhHHHHHHHHHhcC
Q 005642 10 RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLG 86 (686)
Q Consensus 10 ~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 86 (686)
.+-..+...|+.++|..++..+++.... +.. .+..+...+.+.|++++|...++++.+ .+...++.+...+.+.|
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 377 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYAPN-SHQ-ARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG 377 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCC
Confidence 3345566778999999999999886533 333 788889999999999999999998864 35678999999999999
Q ss_pred CHHHHHHHHhhCCC--CC-cchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005642 87 HKEKSLQLFNVMPQ--KN-DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163 (686)
Q Consensus 87 ~~~~A~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 163 (686)
++++|...|+++.+ |+ ...+..+...+... ++.+.|...+..+.+.... +......++..|.+.|++++|.+++
T Consensus 378 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 378 DFEKAAEYLAKATELDPENAAARTQLGISKLSQ--GDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC--CChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999998866 43 33444444555554 7889999999988877543 3455667888899999999999999
Q ss_pred hccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH
Q 005642 164 NMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237 (686)
Q Consensus 164 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 237 (686)
+.+.+ ++..++..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+++.+.+ +.+.
T Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 533 (899)
T TIGR02917 455 KKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNL 533 (899)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcH
Confidence 98874 4567888899999999999999999998654 356678888999999999999999999998763 4567
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHH
Q 005642 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYS 314 (686)
Q Consensus 238 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 314 (686)
.++..+...+.+.|+.++|..+++++.+.+ +.+...+..++..|.+.|++++|..+++++. +.+...|..+..++.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 788888899999999999999999998875 4566778889999999999999999999887 346778999999999
Q ss_pred hCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 005642 315 SCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391 (686)
Q Consensus 315 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 391 (686)
..|++++|...|+++.+ .++..+..+...+.+.|++++|...|+++.+. .+.+..++..+...+...|++++|.++
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998754 35567888999999999999999999999875 344577888899999999999999999
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 005642 392 FARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469 (686)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 469 (686)
++.+.+.. +.+...+..+...+.+.|+ +|...|+++...+ |+..++..++..+.+.|++++|.+.++.+.+ ..
T Consensus 692 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~ 766 (899)
T TIGR02917 692 AKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--TH 766 (899)
T ss_pred HHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence 99998875 5566778888888888888 8999999988764 4446777888899999999999999999884 23
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 005642 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547 (686)
Q Consensus 470 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 547 (686)
+.+...+..++..|...|++++|.+.|+++. .+++...+..+...+...|+ ++|+..++++++..|+++..+..++.
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 3478889999999999999999999999883 34467788999999999999 88999999999999999999999999
Q ss_pred HHhhcCCcchHHHHHHHHHhcCC
Q 005642 548 IFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
++...|++++|.++++++.+.++
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999988654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=312.04 Aligned_cols=541 Identities=12% Similarity=0.066 Sum_probs=446.1
Q ss_pred hhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHHHH
Q 005642 15 CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKS 91 (686)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 91 (686)
+...+++++|...+..+++.+..... .+..+...+...|++++|...|+++.+ .+...+..+...+.+.|++++|
T Consensus 271 ~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 271 DFQKKNYEDARETLQDALKSAPEYLP--ALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCchh--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHH
Confidence 34567899999999998886633222 556667788889999999999988764 3556788888899999999999
Q ss_pred HHHHhhCCC--C-CcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC
Q 005642 92 LQLFNVMPQ--K-NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 168 (686)
Q Consensus 92 ~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 168 (686)
+..++.+.+ | +...+..+...+.+. ++.+.|...++.+.+.. +.+...+..+...+...|++++|.+.|+.+.+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 425 (899)
T TIGR02917 349 IATLSPALGLDPDDPAALSLLGEAYLAL--GDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQ 425 (899)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999998865 2 345566666667666 78899999999888764 33667788888999999999999999988874
Q ss_pred --C-ChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHH
Q 005642 169 --P-DDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242 (686)
Q Consensus 169 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 242 (686)
| .......++..+.+.|++++|..+++++.. .++.+|+.+...+...|++++|.+.|+++.+.. +.+...+..
T Consensus 426 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 504 (899)
T TIGR02917 426 LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAAN 504 (899)
T ss_pred hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHH
Confidence 2 234566677889999999999999988764 356789999999999999999999999998752 445667777
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCH
Q 005642 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRI 319 (686)
Q Consensus 243 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 319 (686)
+...+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++. +.+...+..++..+.+.|++
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCH
Confidence 8888899999999999999998875 4567788889999999999999999999875 33566788889999999999
Q ss_pred HHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 005642 320 EDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396 (686)
Q Consensus 320 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 396 (686)
++|...++++.+ .++..|..++..+...|++++|...|+++.+.. +.+...+..+..++.+.|++++|..+++.+.
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998864 356789999999999999999999999998753 4456678888888999999999999999988
Q ss_pred HhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChh
Q 005642 397 IIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474 (686)
Q Consensus 397 ~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 474 (686)
+.. +.+...+..+...+...|+ +|..+++.+.+.+ +++...+..+...+...|++++|.+.|+.+.. ..|+..
T Consensus 663 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 737 (899)
T TIGR02917 663 ELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQ 737 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCch
Confidence 764 4557788889999998888 8999999998775 34667788888889999999999999999883 456667
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc
Q 005642 475 HYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552 (686)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 552 (686)
++..++.++.+.|++++|.+.++++. .+.+...+..+...+...|+.++|...++++++..|+++.++..+++++...
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 88889999999999999999998872 3346778888889999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcC
Q 005642 553 GEWEKSSLIRDIMREKH 569 (686)
Q Consensus 553 g~~~~a~~~~~~~~~~~ 569 (686)
|+ ++|..+++++.+..
T Consensus 818 ~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA 833 (899)
T ss_pred Cc-HHHHHHHHHHHhhC
Confidence 99 88999999887653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-25 Score=254.25 Aligned_cols=552 Identities=13% Similarity=0.078 Sum_probs=406.0
Q ss_pred hHHHHHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCC--CCh-hhH------
Q 005642 5 IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RNC-FSW------ 75 (686)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~------ 75 (686)
.+.+..-.+-+...++.+.|++.+.+++... |+...++..++..+.+.|+.++|.+.+++..+ |+. ..+
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~ 105 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTM 105 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 3445666677788889999999999998854 33333888899999999999999999998875 322 222
Q ss_pred ----------HHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHH-HHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhH
Q 005642 76 ----------NAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNM-LISGFAKADLAALEYGKQIHSHILVNGLDFDSVL 142 (686)
Q Consensus 76 ----------~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~-ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 142 (686)
..+...+.+.|++++|+..|++..+ |+...... ........ .++.+.|...++.+.+.. +.+...
T Consensus 106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~-~g~~~~A~~~L~~ll~~~-P~~~~~ 183 (1157)
T PRK11447 106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKL-PAQRPEAINQLQRLNADY-PGNTGL 183 (1157)
T ss_pred HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhC-CccHHHHHHHHHHHHHhC-CCCHHH
Confidence 2334467889999999999999876 33332221 22222222 367889999999998875 336778
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCC-CCh----------------------hhHH------------------------
Q 005642 143 GSSLVNLYGKCGDFNSANQVLNMMKE-PDD----------------------FCLS------------------------ 175 (686)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----------------------~~~~------------------------ 175 (686)
+..+...+...|+.++|++.++++.+ +.. ..+.
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 88899999999999999999887642 100 0000
Q ss_pred ----------HHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHH-
Q 005642 176 ----------ALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTL- 240 (686)
Q Consensus 176 ----------~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~- 240 (686)
.....+...|++++|+..|++..+ .+...+..+...+.+.|++++|+..|++..+..-.. +...+
T Consensus 264 ~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 264 QLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred hccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 112345678999999999987654 357788889999999999999999999988743211 11111
Q ss_pred -----------HHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhccc---CCchhH
Q 005642 241 -----------ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV---YDTILL 306 (686)
Q Consensus 241 -----------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 306 (686)
......+.+.|++++|...++++++.. +.+...+..+..++...|++++|++.|+++.. .+...+
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~ 422 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV 422 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 122345678899999999999999874 34566777889999999999999999998873 345566
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhCCCCC------------chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHH
Q 005642 307 NTMITVYSSCGRIEDAKHIFRTMPNKS------------LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLA 373 (686)
Q Consensus 307 ~~li~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~ 373 (686)
..+...|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+. .| +...+.
T Consensus 423 ~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~ 499 (1157)
T PRK11447 423 RGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTY 499 (1157)
T ss_pred HHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 66777664 457899998888775421 123455677788899999999999999875 44 455667
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHH---------HHHH
Q 005642 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTII---------TFTA 442 (686)
Q Consensus 374 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~---------~~~~ 442 (686)
.+...+.+.|++++|...++.+.+... .+...+..+...+...++ +|+..++++......++.. .+..
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 888889999999999999999887542 334444444444555554 7888877764332222221 2234
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005642 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGD 520 (686)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~ 520 (686)
+...+...|+.++|.++++. .+++...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|+
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 56677888999999988772 2346677788999999999999999999988 3455 57778889999999999
Q ss_pred hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCC
Q 005642 521 KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571 (686)
Q Consensus 521 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (686)
.++|+..++++.+..|+++..+..++.++...|++++|.++++++.+...+
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 999999999999999998888999999999999999999999988875543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-23 Score=243.61 Aligned_cols=545 Identities=12% Similarity=0.071 Sum_probs=400.3
Q ss_pred HHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCC--C-ChhhHHHHHHHHHhc
Q 005642 9 ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--R-NCFSWNAMIEGFMKL 85 (686)
Q Consensus 9 ~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 85 (686)
....+.+...|+.++|...+..+++...+.... ....+.......|+.++|+..|+++.+ | +...+..+...+...
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~l-a~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGAPPELDL-AVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCCCChHH-HHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Confidence 444556788899999999999998764333221 221222223345999999999999985 3 566888999999999
Q ss_pred CCHHHHHHHHhhCCC-CCcc-----hHH-------------HHHHHHHhc--ChhhHHHHHHHHHHHHHcCCCCChhHHH
Q 005642 86 GHKEKSLQLFNVMPQ-KNDF-----SWN-------------MLISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVLGS 144 (686)
Q Consensus 86 g~~~~A~~~~~~m~~-~~~~-----~~~-------------~ll~~~~~~--~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 144 (686)
|+.++|+..|+++.+ +... .|. ..+..+... .......+...+.........|+.. ..
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~ 273 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-AR 273 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HH
Confidence 999999999999865 2110 110 011111111 0112334445555444433333322 23
Q ss_pred HHHHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhhcCC--CC---hhhHH----------
Q 005642 145 SLVNLYGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD--TS---SVMWN---------- 206 (686)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~---~~~~~---------- 206 (686)
.....+...|++++|+..|++..+ | +...+..+...+.+.|++++|+..|++..+ |+ ...|.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 446677889999999999999874 4 567888899999999999999999998764 22 11222
Q ss_pred --HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 005642 207 --SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284 (686)
Q Consensus 207 --~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 284 (686)
.....+.+.|++++|+..|+++++.. +.+...+..+...+...|++++|.+.|+++++.. +.+...+..+...|.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-
Confidence 22446778999999999999999863 4456677788899999999999999999999875 345666777777775
Q ss_pred cCChhHHHHHHHhcccCC------------chhHHHHHHHHHhCCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCC
Q 005642 285 RGMPSDACKLFSELKVYD------------TILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGS 349 (686)
Q Consensus 285 ~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 349 (686)
.++.++|...++.+.... ...+..+...+...|++++|.+.|++..+. ++..+..+...|.+.|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 467899999988765321 224556778889999999999999998763 44677888999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchh---------HHHHHHHHHHhchh-
Q 005642 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI---------ISTSLVDFYCKCGY- 419 (686)
Q Consensus 350 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~~~- 419 (686)
+++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. ....+...+...|+
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999998742 2234444444455678899999999998764432222221 12334556666666
Q ss_pred -HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHH
Q 005642 420 -DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIE 497 (686)
Q Consensus 420 -~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (686)
+|..+++. .+++...+..+...+.+.|++++|++.|++..+ ..| +...+..++.+|...|++++|.+.++
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 78887762 244666778888899999999999999999983 356 68899999999999999999999999
Q ss_pred hCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc------hhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 498 QMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA------CAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 498 ~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.+. ..| +...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|...+++...
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 874 455 456677788889999999999999999999776544 3566779999999999999999988864
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-21 Score=212.44 Aligned_cols=532 Identities=10% Similarity=0.031 Sum_probs=379.4
Q ss_pred ccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCC---ChhhHHHHHHHHHhcCCHHHHHH
Q 005642 17 THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQ 93 (686)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 93 (686)
..|++++|...+.+.++..... .. ++..|...|.+.|++++|+..+++..+. |...+..+ ..+ +++++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n-~~-~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDN-IP-LTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHH
Confidence 3488999999999999977555 44 9999999999999999999999998853 33344443 322 89999999
Q ss_pred HHhhCCC--CCcc-hHHHHHHH------HHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHH-HHHHHhcCChHHHHHHH
Q 005642 94 LFNVMPQ--KNDF-SWNMLISG------FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSL-VNLYGKCGDFNSANQVL 163 (686)
Q Consensus 94 ~~~~m~~--~~~~-~~~~ll~~------~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l-~~~~~~~g~~~~A~~~~ 163 (686)
+|+++.. |+.. ++..+... ... ...+.+...++ .....+.|+..+.... ...|.+.|++++|++.+
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y---~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRL---AQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhh---hhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 9999976 5433 33333232 111 23466666666 4444455556655555 89999999999999999
Q ss_pred hccCC--CC-hhhHHHHHHHHHc-cCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-cCHH
Q 005642 164 NMMKE--PD-DFCLSALISGYAN-CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL-EDAS 238 (686)
Q Consensus 164 ~~~~~--~~-~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~ 238 (686)
+++.+ |. ..-...+...|.+ .++ +++..+++...+.++..+..++..|.+.|+.++|.++++++...... |...
T Consensus 206 ~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 206 NEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 99986 33 2335556667777 477 88988887766678899999999999999999999999987543211 3333
Q ss_pred HHHHH------------------------------HHHHHccCChhhHHHH-----------------------------
Q 005642 239 TLASV------------------------------LSACSSLGFLEHGKQV----------------------------- 259 (686)
Q Consensus 239 ~~~~l------------------------------l~~~~~~~~~~~a~~~----------------------------- 259 (686)
++..+ +..+.+.++++.+.++
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 32222 2223334444433333
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhccc--CC----chhHHHHHHHHHhCCC---HHHHHHH-----
Q 005642 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV--YD----TILLNTMITVYSSCGR---IEDAKHI----- 325 (686)
Q Consensus 260 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~---~~~A~~~----- 325 (686)
+..+.+.. +-+....--+.......|+.++|.++|....+ ++ ....+-++..|.+.+. ..++..+
T Consensus 365 ~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 365 ARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 11122210 11333333334445667888999999988764 22 2234467777777766 2333222
Q ss_pred --------------------HhhCCC---C--CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005642 326 --------------------FRTMPN---K--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380 (686)
Q Consensus 326 --------------------~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 380 (686)
+..... + +...|..+..++.. +++++|+..|.+.... .|+......+...+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~ 520 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAY 520 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHH
Confidence 111111 2 45677788877776 8898999988888764 466655444555567
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 005642 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458 (686)
Q Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 458 (686)
..|++++|...++.+... +|+...+..+...+.+.|+ +|...+++..+.+. ++...+..+.......|++++|..
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHH
Confidence 899999999999987554 3444456666777788887 89999999887652 233334444445556799999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 459 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
.+++.. ...|+...+..+..++.+.|++++|...+++. ...|+ ...+..+...+...|+.++|+..++++++..|
T Consensus 598 ~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 598 DLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999988 45678889999999999999999999999988 46664 66788888899999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 537 ENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
+++..+..++.++...|++++|...+++..+..
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999887643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-22 Score=197.09 Aligned_cols=438 Identities=13% Similarity=0.125 Sum_probs=262.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHHHHHH-HHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 005642 75 WNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISG-FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151 (686)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~ll~~-~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~ 151 (686)
...|..-..+.|++++|++--...-+ |....-..++.+ +.+. .+++...+--...++. .+--..+|+.+.+.+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~--~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQG--SRLDKSSAGSLLAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcc--cchhhhhhhhhhhhhc-cchHHHHHHHHHHHHH
Confidence 44566666778888888875544433 222111122222 2222 1222221111111121 1223456777777777
Q ss_pred hcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChh---hHHHHHHHHHhcCChhHHHHHH
Q 005642 152 KCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTDTSSV---MWNSMISGYISNNEDTEALLLF 225 (686)
Q Consensus 152 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~ 225 (686)
..|++++|+.+++.+.+ | .+..|..+..++...|+.+.|...|.+..+-|+. ..+.+...+-..|+.++|...|
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 77777777777777764 2 2345555555555555555555555554443221 1222333333455555555555
Q ss_pred HHHHHCCCCcC-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc--cC-
Q 005642 226 HKMRRNGVLED-ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VY- 301 (686)
Q Consensus 226 ~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~- 301 (686)
.+.++. .|. ...|+.|...+...|+...|.+.|++.++..+ --...|-.|...|...+.+++|...|.+.. .|
T Consensus 208 lkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 208 LKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence 555542 232 22444455555555555555555555555321 123344455555555555555555555443 22
Q ss_pred CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC---chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005642 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378 (686)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 378 (686)
..+.+..+...|..+|.+|.|...+++..+.+ +..|+.|..++-..|+..+|.+.|.+.... .+....+.+.+...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHH
Confidence 23445555555555555555555555554422 245555555555555555555555555443 11223344455555
Q ss_pred HHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHH
Q 005642 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPT-IITFTAILSACDHCGLVKEGQ 457 (686)
Q Consensus 379 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~ 457 (686)
+...|.+++|..+|. ...+ +.|. ...++.|...|-+.|++++|+
T Consensus 364 ~~E~~~~e~A~~ly~---------------------------------~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 364 YREQGKIEEATRLYL---------------------------------KALE--VFPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred HHHhccchHHHHHHH---------------------------------HHHh--hChhhhhhhhhHHHHHHhcccHHHHH
Confidence 555555555555554 4332 2333 356889999999999999999
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 005642 458 KWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIEL 534 (686)
Q Consensus 458 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 534 (686)
..+++.. .++|+ .+.|+.++..|-..|+.+.|.+.+.+. .+.|. ...++.|...+...|++.+|++.|++++.+
T Consensus 409 ~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 409 MCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999988 68896 789999999999999999999999988 47775 677899999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCCcch
Q 005642 535 DPENACAYIQLSSIFATSGEWEK 557 (686)
Q Consensus 535 ~p~~~~~~~~l~~~~~~~g~~~~ 557 (686)
+|+.+.+|..++..+.--.+|.+
T Consensus 486 kPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 486 KPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred CCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999988776666666
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-22 Score=194.19 Aligned_cols=414 Identities=14% Similarity=0.111 Sum_probs=300.8
Q ss_pred HHHHHHHhcCChHHHHHHHhccCCCCh---hhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCh
Q 005642 145 SLVNLYGKCGDFNSANQVLNMMKEPDD---FCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNED 218 (686)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 218 (686)
.|..-..+.|++.+|++.....-..|. ...-.+-.++.+..+.+.....-....+ ....+|..+...+-..|++
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 344445566777777776655543211 1122222445555555554433322222 2355777777777777777
Q ss_pred hHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHH-HHHHHHHHHHhcCChhHHHHHHH
Q 005642 219 TEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI-VASALLDTYSKRGMPSDACKLFS 296 (686)
Q Consensus 219 ~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 296 (686)
++|+.+|+.+++. +| ....|..+..++...|+.+.|.+.|.+.++. .|+.. ..+.+...+...|++++|...|.
T Consensus 133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 7777777777763 44 4557777777777777777777777777774 34433 33445556666777777777776
Q ss_pred hcc--cC-CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc---hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-H
Q 005642 297 ELK--VY-DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL---ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD-K 369 (686)
Q Consensus 297 ~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 369 (686)
+.. +| -.+.|+.|...+-.+|++-.|+..|++..+-|+ ..|-.+...|...+.+++|+..|.+... .+|+ .
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A 286 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHA 286 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcch
Confidence 655 22 245677777777777877777777777766444 5677777777777778877777777665 3444 3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSAC 447 (686)
Q Consensus 370 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 447 (686)
..+..+...|...|.++.|+..|++.++.. +.=...|+.|..++...|+ +|.+.+.+....... ...+.+.|...+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 556666666777778888888877777653 2224567777777777777 777777777654322 456788999999
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLG 524 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A 524 (686)
...|.+++|..+|.... .+.|. ....+.|...|..+|++++|+.-|++. +++|+ ...|+.+...|...|+.+.|
T Consensus 365 ~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 99999999999999987 46674 678899999999999999999999987 68887 67799999999999999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 525 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.+.+.+++..+|..+.++..|+.+|.+.|+..+|+.-++...+..
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999877643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-19 Score=196.96 Aligned_cols=546 Identities=10% Similarity=-0.017 Sum_probs=394.4
Q ss_pred hhHHHHHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCC--C-ChhhHHHHHH
Q 005642 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--R-NCFSWNAMIE 80 (686)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 80 (686)
++..+..+.+.+...|++++|+...+..++.. |+.. .+..++..+ +++++|...++++.+ | +...+..+..
T Consensus 77 n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~-~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~ 150 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDA-RLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCR 150 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccH-HHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHH
Confidence 35667788899999999999999999999865 4443 333333222 899999999999974 3 5566666666
Q ss_pred H--------HHhcCCHHHHHHHHhhCCCCC--cchHHHH-HHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 005642 81 G--------FMKLGHKEKSLQLFNVMPQKN--DFSWNML-ISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL 149 (686)
Q Consensus 81 ~--------~~~~g~~~~A~~~~~~m~~~~--~~~~~~l-l~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~ 149 (686)
. |.+.+...++++ .+...|+ ..+.... .+.+.+. ++.+.+..++..+.+.++. +..-...|..+
T Consensus 151 ~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l--~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~a 225 (987)
T PRK09782 151 SEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYL--KQWSQADTLYNEARQQNTL-SAAERRQWFDV 225 (987)
T ss_pred HhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHH--hCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 5 666666666666 3333343 3333333 6666666 7889999999999998744 45556677778
Q ss_pred HHh-cCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCC-----CChhh-------------------
Q 005642 150 YGK-CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD-----TSSVM------------------- 204 (686)
Q Consensus 150 ~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~------------------- 204 (686)
|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|.++++++.. ++..+
T Consensus 226 y~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~ 304 (987)
T PRK09782 226 LLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANY 304 (987)
T ss_pred HHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccch
Confidence 887 477 8888887765566788888999999999999999999987653 11111
Q ss_pred -----------HHHHHHHHHhcCChhHHHHHHH-----------------------------HHHHCCCCcCHHHHHHHH
Q 005642 205 -----------WNSMISGYISNNEDTEALLLFH-----------------------------KMRRNGVLEDASTLASVL 244 (686)
Q Consensus 205 -----------~~~li~~~~~~g~~~~A~~~~~-----------------------------~m~~~g~~p~~~~~~~ll 244 (686)
.-.++..+.++++++.+.++.. .|.+. .+-+......+-
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~ 383 (987)
T PRK09782 305 TVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLT 383 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHH
Confidence 1122455566666665554421 11111 011333333333
Q ss_pred HHHHccCChhhHHHHHHHHHHc-C-CCchHHHHHHHHHHHHhcCCh---hHHHHH-------------------------
Q 005642 245 SACSSLGFLEHGKQVHGHACKV-G-VIDDVIVASALLDTYSKRGMP---SDACKL------------------------- 294 (686)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~l~~~~~~~g~~---~~A~~~------------------------- 294 (686)
-...+.|+.++|.++++..... + -..+......++..|.+.+.. ..+..+
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA 463 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence 3455678899999999988773 1 222445556788888888762 333222
Q ss_pred HHhcc---cC--CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHH--HHHhCCChhhHHHHHHHHHHCCCCC
Q 005642 295 FSELK---VY--DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV--GLSQNGSPIEALDLFCNMNKLDLRM 367 (686)
Q Consensus 295 ~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p 367 (686)
+.... ++ +...|..+..++.. ++.++|...+.+.....+..++.+.. .+...|++++|...|+++... +|
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 11112 22 55678888888877 88989999887766543444555444 446899999999999998654 45
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005642 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILS 445 (686)
Q Consensus 368 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~ 445 (686)
+...+..+..++.+.|++++|...+...++.. +.+...+..+.....+.|+ +|...+++..+. .|+...+..+..
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~ 617 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARAT 617 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 55566677788899999999999999998865 2333333334334444465 999999999865 456788999999
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKG 522 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~ 522 (686)
.+.+.|++++|...+++.. ...| +...+..+..++...|++++|+..|++. ...| +...+..+..++...|+++
T Consensus 618 ~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999988 3566 6788999999999999999999999987 4566 5778999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCC
Q 005642 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571 (686)
Q Consensus 523 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (686)
+|+..+++++++.|++..+....+++.....+++.+.+-++......+.
T Consensus 695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999999999999999999999999999999988866654443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-18 Score=183.87 Aligned_cols=412 Identities=14% Similarity=0.056 Sum_probs=281.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCC--CChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC
Q 005642 143 GSSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNE 217 (686)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 217 (686)
+......|.+.|+++.|+..|++..+ |+...|..+..+|.+.|++++|++.+++..+ .+..+|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 44567778888999999999988774 7777888888899999999999999987665 345688888899999999
Q ss_pred hhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHh
Q 005642 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297 (686)
Q Consensus 218 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 297 (686)
+++|+..|......+- .+......++..... ..+........+.. +++...+..+.. |......+....-+.+
T Consensus 210 ~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 9999988877655421 111111112211111 11222222222321 112112222222 2221112222111221
Q ss_pred cccCCc---hhHHHHHHHH---HhCCCHHHHHHHHhhCCCC------CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCC
Q 005642 298 LKVYDT---ILLNTMITVY---SSCGRIEDAKHIFRTMPNK------SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365 (686)
Q Consensus 298 ~~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 365 (686)
..+.+. ..+..+...+ ...+++++|.+.|++..+. ....|..+...+...|++++|+..|++..+.
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-- 360 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-- 360 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 111111 1111111111 2346788888888776542 2346777777888888888888888888764
Q ss_pred CCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHH
Q 005642 366 RMD-KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTA 442 (686)
Q Consensus 366 ~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ 442 (686)
.|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|+ +|...|++..+... .+...+..
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~ 438 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQ 438 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHH
Confidence 444 4567777777888888888888888887764 3456677778888888777 88888888876543 25667888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-H-------HHHHHH
Q 005642 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADV-G-------MWSSIL 512 (686)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~li 512 (686)
+...+.+.|++++|+..|++..+ ..| +...+..++.++...|++++|++.|++. ...|+. . .++..+
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 88899999999999999999883 345 6889999999999999999999999986 344431 1 122222
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..+...|++++|+..++++++++|++..++..++.++.+.|++++|.+++++..+.
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 23445699999999999999999999889999999999999999999999988764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-16 Score=166.58 Aligned_cols=504 Identities=13% Similarity=0.111 Sum_probs=366.4
Q ss_pred HHHHHHHHhhCCC-CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCChHHHHHHHh
Q 005642 88 KEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL--DFDSVLGSSLVNLYGKCGDFNSANQVLN 164 (686)
Q Consensus 88 ~~~A~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 164 (686)
++.|...|....+ ........+-++|...+++++..+..++...+...+ +||+.+ .+..++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 4677777776655 222334456678887788899999999999776654 445443 34567789999999999999
Q ss_pred ccCCCChhhHHHHHHH------HHccCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-
Q 005642 165 MMKEPDDFCLSALISG------YANCGKMNDARRVFDRTT---DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL- 234 (686)
Q Consensus 165 ~~~~~~~~~~~~li~~------~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~- 234 (686)
+..+.|+..-++++.. +-....+..+..++.+.- ..|+..-+.|...|...|+++.++.+...+......
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 9997665444444432 123445666676666543 357889999999999999999999999998775311
Q ss_pred -cCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHH
Q 005642 235 -EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMI 310 (686)
Q Consensus 235 -p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 310 (686)
.-...|-.+.+++-..|++++|..+|.+..+....-....+..|..+|.+.|+++.+...|+.+. +.+..+...|.
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 23446788999999999999999999998886533224455778999999999999999999887 44567788888
Q ss_pred HHHHhCC----CHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHH----HHCCCCCCHHHHHHHHHHH
Q 005642 311 TVYSSCG----RIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNM----NKLDLRMDKFSLASVISAC 379 (686)
Q Consensus 311 ~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~~~ 379 (686)
..|...+ ..+.|..++.+..++ |...|-.+...+-... +..++..|..+ ...+..+.....|.+....
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 8888775 567888888877764 4456666666665544 44447666554 4566678889999999999
Q ss_pred HccCChHHHHHHHHHHHHh---CCCcchh------HHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 005642 380 ANISSLELGEQVFARVTII---GLDSDQI------ISTSLVDFYCKCGY--DALALFNEMRNTGVKPTI-ITFTAILSAC 447 (686)
Q Consensus 380 ~~~~~~~~a~~~~~~~~~~---~~~~~~~------~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~-~~~~~ll~~~ 447 (686)
...|+++.|...|...... ...++.. +--.+...+-..++ .|.+.+....+. .|.. ..|..++...
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMA 540 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHH
Confidence 9999999999999987655 1223321 12223333333323 788888888865 3443 3455555444
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHH-------
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM----PFEADVGMWSSILRGCV------- 516 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~li~~~~------- 516 (686)
...++..+|...++.... ....++..+..++..+.+...+..|.+-|+.. ...+|..+.-+|.+.|.
T Consensus 541 ~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~ 618 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPS 618 (1018)
T ss_pred HhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccc
Confidence 456788899999999873 44457777888888888888888888855554 34577777777777654
Q ss_pred -----hcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCccceeeccccceeehh
Q 005642 517 -----AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDT 591 (686)
Q Consensus 517 -----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (686)
..+..++|++.|.+++..+|.|..+-+.++-+++..|++.+|..+|.++++...+..+ +| +..++|++..+
T Consensus 619 rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d--v~--lNlah~~~e~~ 694 (1018)
T KOG2002|consen 619 RNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED--VW--LNLAHCYVEQG 694 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc--ee--eeHHHHHHHHH
Confidence 2345788999999999999999888888999999999999999999999986543333 23 34457888888
Q ss_pred hhhhhhcHHHH
Q 005642 592 MFLQLANFDEI 602 (686)
Q Consensus 592 ~~~~~~~~~~~ 602 (686)
.|..+++.++-
T Consensus 695 qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 695 QYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHH
Confidence 88888888873
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-18 Score=178.15 Aligned_cols=301 Identities=12% Similarity=0.102 Sum_probs=212.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCch---HHHHHHHHHHHHhc
Q 005642 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD---VIVASALLDTYSKR 285 (686)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~ 285 (686)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344556677777888888777652 23445666677777777777777777777766432221 23455556666666
Q ss_pred CChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCC
Q 005642 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365 (686)
Q Consensus 286 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 365 (686)
|++++|..+|+++... ...+..++..++..+.+.|++++|.+.++.+.+.+.
T Consensus 121 g~~~~A~~~~~~~l~~----------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 121 GLLDRAEELFLQLVDE----------------------------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred CCHHHHHHHHHHHHcC----------------------------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 6666666666543210 113445677777777777888888888877776543
Q ss_pred CCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHH
Q 005642 366 RMDK----FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFT 441 (686)
Q Consensus 366 ~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 441 (686)
.++. ..+..+...+.+.|++++|...++++.+.. +.+...+.
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----------------------------------p~~~~~~~ 218 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD----------------------------------PQCVRASI 218 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC----------------------------------cCCHHHHH
Confidence 3221 133455556667777777777777665432 11345677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 005642 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPE--IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGMWSSILRGCVAH 518 (686)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~ 518 (686)
.+...+.+.|++++|.++++++.+ ..|+ ..++..++.+|.+.|++++|...++++ ...|+...+..++..+.+.
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~ 295 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEE---QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQ 295 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 788889999999999999999883 2343 467888999999999999999999987 3667777778899999999
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHHHhh---cCCcchHHHHHHHHHhcCCCCCCCc
Q 005642 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFAT---SGEWEKSSLIRDIMREKHVGKLPGC 576 (686)
Q Consensus 519 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 576 (686)
|++++|...++++++..|++.. +..+...+.. .|+.+++..++++|.+++++.+|.+
T Consensus 296 g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 296 EGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 9999999999999999997754 5555555443 5699999999999999999888874
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-17 Score=182.13 Aligned_cols=339 Identities=11% Similarity=-0.006 Sum_probs=200.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 005642 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288 (686)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 288 (686)
+..+.+.|++++|..+++..+... +-+...+..++.+....|+++.|...++.+.+.. +.+...+..+...+...|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 344444455555555554444431 1122233333333444455555555555544432 22333444444455555555
Q ss_pred hHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC--CC-chhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005642 289 SDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KS-LISWNSMIVGLSQNGSPIEALDLFCNMNK 362 (686)
Q Consensus 289 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (686)
++|...+++.. +.+...+..++..+...|++++|...++.+.. |+ ...+..+ ..+...|++++|...++.+.+
T Consensus 127 ~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 127 ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 55555554443 12233444445555555555555555444321 22 2222222 235556666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh------HHHHHHHHHHHCCCCCC
Q 005642 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------DALALFNEMRNTGVKPT 436 (686)
Q Consensus 363 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~A~~~~~~m~~~~~~p~ 436 (686)
....++......+..++...|++++|...++.+.+.. +.+...+..+...|...|+ +|...|++..+... .+
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~ 283 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DN 283 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CC
Confidence 4322333333444455566666666666666666543 3344555556666666665 26777777765532 26
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHH-HHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEADVGM-WSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~li~ 513 (686)
...+..+...+...|++++|...+++..+ ..| +...+..+..++.+.|++++|...|+++. ..|+... +..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 67889999999999999999999999883 456 56778889999999999999999999883 5666444 444567
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
++...|+.++|...++++++..|++. ...|++|...+....+
T Consensus 361 al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQIS 402 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHH
Confidence 78899999999999999999999764 2344556655555554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-16 Score=163.02 Aligned_cols=534 Identities=14% Similarity=0.092 Sum_probs=382.0
Q ss_pred cchhhHHHHHHHHhCCCCCchhhHHHHHHHH--HhcCCcHHHHHHhccCCC--CC--hhhHHHHHHHHHhcCCHHHHHHH
Q 005642 21 IHVGKQLHLHFLKKGILNSTLPIANRLLQMY--MRCGNPTDALLLFDEMPR--RN--CFSWNAMIEGFMKLGHKEKSLQL 94 (686)
Q Consensus 21 ~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~ 94 (686)
.+.|.+.|...++.. |+. +...|..+. ...|++..|..+|+.... |. +...-.+...+.+.|+.+.|+..
T Consensus 146 ~~~A~a~F~~Vl~~s--p~N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDN--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhC--Ccc--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHH
Confidence 345555666665544 222 334454443 345799999999998542 21 11222334556788999999999
Q ss_pred HhhCCCCCcchHHHHHHH--H--HhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCC
Q 005642 95 FNVMPQKNDFSWNMLISG--F--AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 170 (686)
Q Consensus 95 ~~~m~~~~~~~~~~ll~~--~--~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (686)
|.+..+.|.....+++.. + .......+..+.+.+....... ..++.+.+.|.+.|.-.|+++.+..+...+...+
T Consensus 222 ~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 222 FERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 999988544333333221 1 1113355677777777766654 4578889999999999999999999988877422
Q ss_pred ------hhhHHHHHHHHHccCCHHHHHHHHhhcCCC---C-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHH
Q 005642 171 ------DFCLSALISGYANCGKMNDARRVFDRTTDT---S-SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240 (686)
Q Consensus 171 ------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 240 (686)
..+|-.+..+|...|++++|...|-+..+. + +..+.-+...|...|+.+.+...|+...+. .+-+..|.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHH
Confidence 345778899999999999999999876653 2 456777889999999999999999999886 34456677
Q ss_pred HHHHHHHHccC----ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc--------cCCchhHHH
Q 005642 241 ASVLSACSSLG----FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--------VYDTILLNT 308 (686)
Q Consensus 241 ~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~ 308 (686)
..+...|...+ ..+.|..++....+.- +.|...|-.+..+|....-+. +..+|..+. +..+...|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 77777777665 5677888888877763 567788888887776654433 355554433 456778999
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCC-------Cc------hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHH-HH
Q 005642 309 MITVYSSCGRIEDAKHIFRTMPNK-------SL------ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL-AS 374 (686)
Q Consensus 309 li~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ 374 (686)
+.......|++++|...|...... +. .+-..+...+-..++++.|.+.|..+.+. .|+-.+. .-
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylR 535 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLR 535 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHH
Confidence 999999999999999999887542 22 12334566666778999999999999875 4554433 33
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc--
Q 005642 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTG-VKPTIITFTAILSACDH-- 449 (686)
Q Consensus 375 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~-- 449 (686)
++...-..+...+|...+..+.+.. ..++..++-+...|.+..+ .|.+-|....+.- ..+|..+..+|...|.+
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 3322224467888888888877654 4455556656656666555 5555555444322 23677777777776543
Q ss_pred ----------cCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 005642 450 ----------CGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCV 516 (686)
Q Consensus 450 ----------~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~ 516 (686)
.+..++|+++|.+.. ...| |...-+.++-+++..|++.+|..+|.+.. ......+|-++..+|.
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL---~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVL---RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHH---hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 345678899988887 3445 88888999999999999999999999984 2335677889999999
Q ss_pred hcCChhHHHHHHHHHHcc-C-CCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 517 AHGDKGLGRKVAERMIEL-D-PENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..|++-.|+++|+..+.. . .+++.+...|+.++.+.|.|.+|.+++......
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999998883 2 347788889999999999999999998876653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-16 Score=175.98 Aligned_cols=395 Identities=9% Similarity=0.029 Sum_probs=232.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHH
Q 005642 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGY 212 (686)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 212 (686)
+.....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|.++|++... .+...+..++..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 444445555666677777777777777653 2233466666777777777777777776432 3455666667777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHH
Q 005642 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292 (686)
Q Consensus 213 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 292 (686)
...|++++|+..+++..+. .+.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...|..+.|.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHH
Confidence 7777777777777777664 233444 6566666667777777777777777754 224445555666666677777777
Q ss_pred HHHHhcccCCch--------hHHHHHHHHHh-----CCCH---HHHHHHHhhCCC---CCchh---HH----HHHHHHHh
Q 005642 293 KLFSELKVYDTI--------LLNTMITVYSS-----CGRI---EDAKHIFRTMPN---KSLIS---WN----SMIVGLSQ 346 (686)
Q Consensus 293 ~~~~~~~~~~~~--------~~~~li~~~~~-----~g~~---~~A~~~~~~~~~---~~~~~---~~----~li~~~~~ 346 (686)
..++.... ++. ....++..... .+++ ++|++.++.+.+ .++.. +. ..+..+..
T Consensus 171 ~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 171 GAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 77665553 111 11111111111 1112 344444444331 11110 00 00222334
Q ss_pred CCChhhHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHH
Q 005642 347 NGSPIEALDLFCNMNKLDLR-MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALF 425 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~ 425 (686)
.|++++|+..|+++.+.+.+ |+. ....+...+...|++++|+..|+.+.+.....
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~----------------------- 305 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETI----------------------- 305 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC-----------------------
Confidence 45555555555555544321 211 11113344555555555555555443321000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC----------CCCC---hhHHHHHHHHHHhcCChHHH
Q 005642 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH----------IDPE---IEHYSCMVDLFARAGCLNEA 492 (686)
Q Consensus 426 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A 492 (686)
..........+..++...|++++|.++++.+..... -.|+ ...+..+...+...|++++|
T Consensus 306 -------~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 306 -------ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred -------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 000123455556667788888888888888763210 1122 23455677778888888888
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 493 VNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 493 ~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
++.++++ ...| +...+..+...+...|++++|++.++++++.+|++...+..++.++...|+|++|..+++.+.+.
T Consensus 379 ~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 379 EMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888887 2344 46677788888888888888888888888888888888888888888888888888888887764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-18 Score=176.11 Aligned_cols=232 Identities=10% Similarity=0.015 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCCCC--------hhhHHHHHH
Q 005642 142 LGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTDTS--------SVMWNSMIS 210 (686)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~ 210 (686)
++..+...|.+.|+++.|+.+|+++.+ .+..++..++..+.+.|++++|.+.++++.+.+ ...|..+..
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 445556666666666666666666653 233445555555555555555555555443211 112334444
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhH
Q 005642 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290 (686)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 290 (686)
.+.+.|++++|+..|+++.+.. +.+..++..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555555431 222334444555555555555555555555544322223344455555555555555
Q ss_pred HHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH
Q 005642 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370 (686)
Q Consensus 291 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 370 (686)
|...++++.. ..|+...+..++..+.+.|++++|..+++++.+. .|+..
T Consensus 268 A~~~l~~~~~-----------------------------~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~ 316 (389)
T PRK11788 268 GLEFLRRALE-----------------------------EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLR 316 (389)
T ss_pred HHHHHHHHHH-----------------------------hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHH
Confidence 5555554331 0133334455555666666666666666655543 45555
Q ss_pred HHHHHHHHHHc---cCChHHHHHHHHHHHHhCCCcchh
Q 005642 371 SLASVISACAN---ISSLELGEQVFARVTIIGLDSDQI 405 (686)
Q Consensus 371 t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 405 (686)
++..++..+.. .|+.+++..+++.+.+.++.|++.
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 55555555443 335566666666665555444433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-16 Score=173.34 Aligned_cols=367 Identities=11% Similarity=-0.009 Sum_probs=253.1
Q ss_pred hcCChHHHHHHHhccCC------CChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHH
Q 005642 152 KCGDFNSANQVLNMMKE------PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEAL 222 (686)
Q Consensus 152 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 222 (686)
+..+++.-.-+|...++ .+..-...++..+.+.|++++|..+++.... .+...+..++.+....|++++|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 44556555555555543 1122344455667777888888887776543 34555666667777788888888
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc--c
Q 005642 223 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--V 300 (686)
Q Consensus 223 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 300 (686)
..|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..++..+...|++++|...++.+. .
T Consensus 97 ~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 97 QVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 8888887742 3345566667777778888888888888887753 3456667777778888888888888777654 2
Q ss_pred C-CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC----chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 005642 301 Y-DTILLNTMITVYSSCGRIEDAKHIFRTMPNKS----LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375 (686)
Q Consensus 301 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 375 (686)
| +...+..+ ..+...|++++|...++.+.+.+ ...+..+...+.+.|++++|+..|+++.+.. +.+...+..+
T Consensus 175 P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~L 252 (656)
T PRK15174 175 PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSL 252 (656)
T ss_pred CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 3 33333333 34677788888888887765432 2334445567778888888888888887652 3345566677
Q ss_pred HHHHHccCChHH----HHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005642 376 ISACANISSLEL----GEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDH 449 (686)
Q Consensus 376 l~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 449 (686)
...+...|++++ |...++.+.+.. +.+...+..+...+.+.|+ +|...+++..+.... +...+..+...+.+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~ 330 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQ 330 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 777788888775 778888777764 3456677778888888777 788888887765433 55677788889999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 005642 450 CGLVKEGQKWFDAMKWQYHIDPEI-EHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGMWSSILRGCVAHGDKGLGRKV 527 (686)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~ 527 (686)
.|++++|...++.+.. ..|+. ..+..+..++...|++++|...|++. ...|+.. ..++++|...
T Consensus 331 ~G~~~eA~~~l~~al~---~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-----------~~~~~ea~~~ 396 (656)
T PRK15174 331 VGQYTAASDEFVQLAR---EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL-----------PQSFEEGLLA 396 (656)
T ss_pred CCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----------hhhHHHHHHH
Confidence 9999999999999883 34643 44555678899999999999999987 4556542 3455678888
Q ss_pred HHHHHccCCCC
Q 005642 528 AERMIELDPEN 538 (686)
Q Consensus 528 ~~~~~~~~p~~ 538 (686)
+.++++.-+..
T Consensus 397 ~~~~~~~~~~~ 407 (656)
T PRK15174 397 LDGQISAVNLP 407 (656)
T ss_pred HHHHHHhcCCc
Confidence 88888755443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.1e-16 Score=171.54 Aligned_cols=402 Identities=8% Similarity=-0.008 Sum_probs=294.5
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHc
Q 005642 107 NMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYAN 183 (686)
Q Consensus 107 ~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~ 183 (686)
.-.+...... ++.+.|..++....... +.+...+..+...+.+.|++++|.+++++..+ | +...+..+...+..
T Consensus 19 ~d~~~ia~~~--g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWA--GQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3344444444 67889999998887632 44566789999999999999999999999753 4 45567788888999
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHH
Q 005642 184 CGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260 (686)
Q Consensus 184 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 260 (686)
.|++++|...+++..+ .+.. |..+...+...|+.++|+..++++.+.. +.+...+..+..++...+..+.|...+
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 9999999999998764 3455 8889999999999999999999999852 334555666777788889999999988
Q ss_pred HHHHHcCCCchH------HHHHHHHHHHHh-----cCCh---hHHHHHHHhcc---cCCchh---H----HHHHHHHHhC
Q 005642 261 GHACKVGVIDDV------IVASALLDTYSK-----RGMP---SDACKLFSELK---VYDTIL---L----NTMITVYSSC 316 (686)
Q Consensus 261 ~~~~~~g~~~~~------~~~~~l~~~~~~-----~g~~---~~A~~~~~~~~---~~~~~~---~----~~li~~~~~~ 316 (686)
+.+.+ .|+. .....++..+.. .+++ ++|...++.+. +.++.. + ...+.++...
T Consensus 174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 77664 2221 112223333322 2234 67787777776 222221 1 1113455678
Q ss_pred CCHHHHHHHHhhCCCCC---ch-hHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChHHHH
Q 005642 317 GRIEDAKHIFRTMPNKS---LI-SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM---DKFSLASVISACANISSLELGE 389 (686)
Q Consensus 317 g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~ 389 (686)
|++++|...|+++.+.+ +. .-..+...|...|++++|+..|+++.+..... .......+..++...|++++|.
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 99999999999998743 21 22335778999999999999999987643211 1244566677789999999999
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 005642 390 QVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTI---ITFTAILSACDHCGLVKEGQKWFDAMKWQ 466 (686)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 466 (686)
+.++.+.+... +....+. ...-.|+. ..+..+...+...|+.++|+++++++..
T Consensus 331 ~~l~~~~~~~P-~~~~~~~---------------------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~- 387 (765)
T PRK10049 331 TVTAHTINNSP-PFLRLYG---------------------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY- 387 (765)
T ss_pred HHHHHHhhcCC-ceEeecC---------------------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 99998876532 1111110 00113342 3455677788899999999999999983
Q ss_pred cCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 005642 467 YHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 467 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 541 (686)
..| +...+..++..+...|++++|++.+++. ...|+ ...+..++..+...|++++|+..++++++..|+++.+
T Consensus 388 --~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 388 --NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred --hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 345 6889999999999999999999999998 46675 5667777788899999999999999999999998763
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-15 Score=163.13 Aligned_cols=417 Identities=10% Similarity=0.058 Sum_probs=186.9
Q ss_pred hhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHH---HHHHHccCCHHHHHHHHh
Q 005642 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL---ISGYANCGKMNDARRVFD 195 (686)
Q Consensus 119 ~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~ 195 (686)
|++..|...+.++.+..+.....++ .++..+...|+.++|+..+++...|+...+..+ ...+...|++++|+++|+
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555555554322222233 555555555666666666555554433322222 234445555666665555
Q ss_pred hcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchH
Q 005642 196 RTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272 (686)
Q Consensus 196 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 272 (686)
++.+ .++..+..++..+.+.++.++|++.++++.+. .|+...+..+...+...++..+|.+.++++.+.. +.+.
T Consensus 127 kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~ 203 (822)
T PRK14574 127 SSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSE 203 (822)
T ss_pred HHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCH
Confidence 5543 12344445555555555555555555555442 3443333333233333344434555555555543 3344
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcccC-Cchh--------HHHHHHHH---H--hCCC---HHHHHHHHhhCCC---C
Q 005642 273 IVASALLDTYSKRGMPSDACKLFSELKVY-DTIL--------LNTMITVY---S--SCGR---IEDAKHIFRTMPN---K 332 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~li~~~---~--~~g~---~~~A~~~~~~~~~---~ 332 (686)
..+..+..++.+.|-...|.++..+-+.- +... ...+++.- . ...+ .+.|+.-++.+.. +
T Consensus 204 e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~ 283 (822)
T PRK14574 204 EVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGK 283 (822)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccC
Confidence 45555555555555555555555443210 0000 00011000 0 0011 1222222222221 1
Q ss_pred Cc---hh----HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchh
Q 005642 333 SL---IS----WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405 (686)
Q Consensus 333 ~~---~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 405 (686)
++ .. .--.+.++...|++.++++.|+.+...|.+....+-..+.++|...+++++|..++..+.....++.
T Consensus 284 ~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~-- 361 (822)
T PRK14574 284 DPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF-- 361 (822)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc--
Confidence 11 00 1112334444455555555555555544443334444555555555555555555554433221000
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC----------CCCC---
Q 005642 406 ISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH----------IDPE--- 472 (686)
Q Consensus 406 ~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----------~~p~--- 472 (686)
...++......|.-++...+++++|..+++.+.+... -.|+
T Consensus 362 --------------------------~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 362 --------------------------RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred --------------------------CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 0111222234455555555555555555555542100 0111
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
...+..++..+.-.|++.+|++.++++. ..| |......+.+.+...|.+.+|++.++.+..++|++..+....+.++.
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAM 495 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence 1223334444555555555555555552 223 44455555555555555555555555555555555555555555555
Q ss_pred hcCCcchHHHHHHHHHh
Q 005642 551 TSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 551 ~~g~~~~a~~~~~~~~~ 567 (686)
..|+|.+|..+.+.+.+
T Consensus 496 ~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 496 ALQEWHQMELLTDDVIS 512 (822)
T ss_pred hhhhHHHHHHHHHHHHh
Confidence 55555555555554444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-16 Score=169.21 Aligned_cols=251 Identities=14% Similarity=0.047 Sum_probs=143.5
Q ss_pred CChhHHHHHHHHHHHCC-CCc-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHH
Q 005642 216 NEDTEALLLFHKMRRNG-VLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293 (686)
Q Consensus 216 g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 293 (686)
+++++|++.|++..+.+ ..| ....+..+...+...|++++|...++..++.. +.+...|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 45666666666666543 223 23345555555556666666666666666643 2234455566666666666666666
Q ss_pred HHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC
Q 005642 294 LFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367 (686)
Q Consensus 294 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 367 (686)
.|++.. +.+...|..+...+...|++++|...|++..+. +...+..+...+.+.|++++|+..|++..+. .+.
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~ 465 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPE 465 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC
Confidence 666554 223455666666666666666666666665442 2344555666666666666666666666553 222
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 005642 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTII-TFTAILSA 446 (686)
Q Consensus 368 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~ 446 (686)
+...+..+...+...|++++|...|+..++.....+. ..++.. .++..+..
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~----------------------------~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP----------------------------MYMNVLPLINKALAL 517 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc----------------------------ccccHHHHHHHHHHH
Confidence 3455556666666666666666666665543211100 000111 11222223
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 447 CDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
+...|++++|.+++++..+ +.| +...+..++.++.+.|++++|+..|++.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~---l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALI---IDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3345788888888887762 345 3456777777777777777777777765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-15 Score=160.20 Aligned_cols=442 Identities=10% Similarity=0.023 Sum_probs=311.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CCcc-hHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 005642 77 AMIEGFMKLGHKEKSLQLFNVMPQ--KNDF-SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153 (686)
Q Consensus 77 ~li~~~~~~g~~~~A~~~~~~m~~--~~~~-~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~ 153 (686)
.-+-...+.|+++.|++.|++..+ |+.. ....++..+... ++.+.|..+++..+ ..-..+......+...|...
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~--G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA--GRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc--CCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHc
Confidence 333445799999999999999987 5432 223677777766 78899999998887 11122233333446688888
Q ss_pred CChHHHHHHHhccCC--CC-hhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHh--cCChhHHHHHHHHH
Q 005642 154 GDFNSANQVLNMMKE--PD-DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS--NNEDTEALLLFHKM 228 (686)
Q Consensus 154 g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m 228 (686)
|++++|+++|+++.+ |+ ...+..++..+...++.++|++.++++.+.++.....+..++.. .++..+|++.++++
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999999999985 33 45566777889999999999999999887554433334445544 56666699999999
Q ss_pred HHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHH--HHHHHHHHh---------cCCh---hHHHHH
Q 005642 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA--SALLDTYSK---------RGMP---SDACKL 294 (686)
Q Consensus 229 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~l~~~~~~---------~g~~---~~A~~~ 294 (686)
.+.+ +-+...+..+..++.+.|-...|.++..+-... +.+....+ ...+.-..+ ..++ +.|..-
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 9863 446777788889999999999998776653221 22222111 111111111 1222 334444
Q ss_pred HHhccc-----CCc-hh----HHHHHHHHHhCCCHHHHHHHHhhCCCCC----chhHHHHHHHHHhCCChhhHHHHHHHH
Q 005642 295 FSELKV-----YDT-IL----LNTMITVYSSCGRIEDAKHIFRTMPNKS----LISWNSMIVGLSQNGSPIEALDLFCNM 360 (686)
Q Consensus 295 ~~~~~~-----~~~-~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 360 (686)
++.+.. |.. .. ..-.+.++...|+..++.+.|+.+..+. ..+-..+..+|...+++++|..+|+.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 444442 221 12 2245668889999999999999998643 245667889999999999999999999
Q ss_pred HHCC-----CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCC
Q 005642 361 NKLD-----LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKP 435 (686)
Q Consensus 361 ~~~g-----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p 435 (686)
.... ..++......|.-++...+++++|..+++.+.+.. ++-...+. -......|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~-p~~~~~~~-------------------~~~~~pn~ 413 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT-PYQVGVYG-------------------LPGKEPND 413 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcEEeccC-------------------CCCCCCCc
Confidence 7643 12233345778889999999999999999998732 11111010 00011334
Q ss_pred CHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHH
Q 005642 436 TII-TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD-VGMWSSI 511 (686)
Q Consensus 436 ~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l 511 (686)
|-. .+..++..+...|+..+|++.++++.. ..| |......+.+.+...|.+.+|.+.++... ..|+ ..+....
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 443 344556678899999999999999983 445 89999999999999999999999998874 5664 5667778
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 547 (686)
+..+...|++++|..+.+.+.+..|+++. ...+..
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~~Pe~~~-~~~l~r 525 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISRSPEDIP-SQELDR 525 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhCCCchh-HHHHHH
Confidence 88888999999999999999999999875 334443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-13 Score=129.13 Aligned_cols=344 Identities=13% Similarity=0.187 Sum_probs=252.9
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHH
Q 005642 169 PDDFCLSALISGYANCGKMNDARRVFDRTTD----TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244 (686)
Q Consensus 169 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 244 (686)
.+..++..||.++|+-...+.|.+++++... -+..++|.+|.+-.- -...+++.+|.+..+.||..||+.++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence 4558999999999999999999999997654 467788888875432 22378999999999999999999999
Q ss_pred HHHHccCChhhH----HHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhH-HHHHHHhcc------------cCCchhHH
Q 005642 245 SACSSLGFLEHG----KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD-ACKLFSELK------------VYDTILLN 307 (686)
Q Consensus 245 ~~~~~~~~~~~a----~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~------------~~~~~~~~ 307 (686)
.+.++.|+++.+ .+++.+|.+.|+.|...+|..++..+++.++..+ +..++.++. +.|...+.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 999999988764 5788999999999999999999999999888754 455555443 12445677
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCCC-----------CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 005642 308 TMITVYSSCGRIEDAKHIFRTMPNK-----------SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376 (686)
Q Consensus 308 ~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 376 (686)
.-+..|.+..+.+-|.++-.-.... ...-|..+....++....+.-..+|+.|.-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 7778888889988888876655431 12356677888889999999999999999888899999999999
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCH
Q 005642 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTII---TFTAILSACDHCGLV 453 (686)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~ 453 (686)
++..-.+.++-..+++.+++..|..-+.... .+++..|......|+.. -+.....-|+. ++
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~--------------eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~ 504 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLR--------------EEILMLLARDKLHPLTPEREQLQVAFAKCAA--DI 504 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHH--------------HHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HH
Confidence 9999999999999999999988855443332 23334444444444433 23332222211 11
Q ss_pred HHH-HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHH
Q 005642 454 KEG-QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-------PFEADVGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 454 ~~A-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~ 525 (686)
.++ ...-.++. ..+-.....+++.-.+.|.|+.++|++++.-. +..|......-+++...+.++...|.
T Consensus 505 ~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 505 KEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 111 11122222 33446667788888999999999999998766 12333333446667777888899999
Q ss_pred HHHHHHHccC
Q 005642 526 KVAERMIELD 535 (686)
Q Consensus 526 ~~~~~~~~~~ 535 (686)
.+++-+.+.+
T Consensus 582 ~~lQ~a~~~n 591 (625)
T KOG4422|consen 582 EVLQLASAFN 591 (625)
T ss_pred HHHHHHHHcC
Confidence 9988887644
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-11 Score=120.30 Aligned_cols=529 Identities=13% Similarity=0.100 Sum_probs=358.3
Q ss_pred CccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCC---CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 005642 19 HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP---RRNCFSWNAMIEGFMKLGHKEKSLQLF 95 (686)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 95 (686)
+++..|+.+.....+....+++ .|-+-...=-..|++..|+.+..+=- .++...|-.- ++....+.|..+.
T Consensus 265 ~DikKaR~llKSvretnP~hp~--gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLea----iRLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPP--GWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEA----IRLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCc--hHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHH----HhcCChHHHHHHH
Confidence 4566677777777776644333 44444444455677777776664332 2344444333 2344555566665
Q ss_pred hhCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC--CChhh
Q 005642 96 NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDFC 173 (686)
Q Consensus 96 ~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 173 (686)
-...+....+-..-+.+.--. .+...-..++...++. ++.++..|-..+ ...+.++|+-++.+..+ |.
T Consensus 339 A~Avr~~P~Sv~lW~kA~dLE--~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAveccp~--- 408 (913)
T KOG0495|consen 339 ANAVRFLPTSVRLWLKAADLE--SDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVECCPQ--- 408 (913)
T ss_pred HHHHHhCCCChhhhhhHHhhh--hHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHhccc---
Confidence 555441111212222222111 2333334455554443 444566665444 44667778888887765 32
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHH----HHCCCCcCHHHHHHHHHH
Q 005642 174 LSALISGYANCGKMNDARRVFDRTT---DTSSVMWNSMISGYISNNEDTEALLLFHKM----RRNGVLEDASTLASVLSA 246 (686)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~ 246 (686)
-.-|.-+|.+..-++.|..++++.. ..+...|.+-...--.+|+.+...+++.+- ...|+..+...|..=...
T Consensus 409 s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~ 488 (913)
T KOG0495|consen 409 SMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEA 488 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHH
Confidence 1234455667777888888887654 457778887777777888888888877654 456888888888888888
Q ss_pred HHccCChhhHHHHHHHHHHcCCCch--HHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHH
Q 005642 247 CSSLGFLEHGKQVHGHACKVGVIDD--VIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIED 321 (686)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 321 (686)
|-..|..-.+..+....+..|+... ..+|..-.+.|.+.+.++-|..+|.... +.+...|...+..--..|..+.
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHH
Confidence 8888888888888888888776543 3478888888889999999999888776 3456677777777777888888
Q ss_pred HHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 005642 322 AKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398 (686)
Q Consensus 322 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 398 (686)
-..+|++... +....|-.....+-..|+...|..++....+.. +.+...+-..+..-.....++.|..+|.+....
T Consensus 569 l~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 569 LEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 8888888765 345667767777778899999999998888763 335667777777778888999999999888765
Q ss_pred CCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHH
Q 005642 399 GLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTI-ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHY 476 (686)
Q Consensus 399 ~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~ 476 (686)
+....+.+-++-+.-|....++|++++++..+. -|+. -.|..+.+.+-+.++++.|.+.|..-. ..-| .+..|
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~---k~cP~~ipLW 722 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGT---KKCPNSIPLW 722 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc---ccCCCCchHH
Confidence 433333333444455555555888888887764 3444 467777788888899999988888755 2345 57788
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc---------------
Q 005642 477 SCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA--------------- 539 (686)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~--------------- 539 (686)
..|...=.+.|.+-.|..++++.. ..| +...|-..|..-.+.|+.+.|..+..++++--|.+.
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 888888888899999999998874 234 677788889988899999998888877777444433
Q ss_pred ---------------hhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 540 ---------------CAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 540 ---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.+...++..++...+++.|+++|....+.+
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 345556666666666777777666555543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-14 Score=135.55 Aligned_cols=451 Identities=12% Similarity=0.100 Sum_probs=306.9
Q ss_pred chHHHHHHHHHhcCh-hhHHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCChHHHHHHHhccCC--CC------hhh
Q 005642 104 FSWNMLISGFAKADL-AALEYGKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGDFNSANQVLNMMKE--PD------DFC 173 (686)
Q Consensus 104 ~~~~~ll~~~~~~~~-~~~~~a~~i~~~~~~~g~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~ 173 (686)
.||+.|.....+-.. .-..+|...++-+++...-|+.... -.+.+.|.+...+..|++.++.... |+ ...
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 467666654443321 3356777888888888777766543 3456778888899999998876653 22 234
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC------------cCHHH
Q 005642 174 LSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL------------EDAST 239 (686)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------p~~~~ 239 (686)
.+.+.-.+.+.|++++|+..|+...+ ||..+-..|+-++..-|+-++..+.|++|+.-... |+...
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 45555668899999999999998664 66555445555666778999999999999763222 33333
Q ss_pred HHHHHH-----HHHccC--ChhhHHHHHHHHHHcCCCchH---------------------HHHHHHHHHHHhcCChhHH
Q 005642 240 LASVLS-----ACSSLG--FLEHGKQVHGHACKVGVIDDV---------------------IVASALLDTYSKRGMPSDA 291 (686)
Q Consensus 240 ~~~ll~-----~~~~~~--~~~~a~~~~~~~~~~g~~~~~---------------------~~~~~l~~~~~~~g~~~~A 291 (686)
.+..++ -..+.+ +.+++.-.-.+++.--+.|+- ..--.-..-|.+.|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 332222 122211 122222111111111111210 0011124578899999999
Q ss_pred HHHHHhcccCCchhHH----HHHHH--HHhCCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005642 292 CKLFSELKVYDTILLN----TMITV--YSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNK 362 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~----~li~~--~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (686)
.++++-....|..+-+ .|-.. +..-.++..|.+.-+..... ++.....-......+|++++|.+.|++...
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 9999988866654432 22222 22245677888777766543 223333333445568999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHH
Q 005642 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITF 440 (686)
Q Consensus 363 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~ 440 (686)
..-......|++ .-.+...|++++|++.|-++... +..+..+...+...|....+ +|++++-+.... ++.|+...
T Consensus 519 ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 644444444443 33567889999999998876432 23456666677777776666 777777655432 45578889
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHH-Hh
Q 005642 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEADVGMWSSILRGC-VA 517 (686)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~li~~~-~~ 517 (686)
..|...|-+.|+...|.+++-+-- ..-| +.++...|...|....-+++|+.+|++.. +.|+..-|..++..| ++
T Consensus 596 skl~dlydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 999999999999999999887643 4445 89999999999999999999999999985 889999999988765 67
Q ss_pred cCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHH
Q 005642 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561 (686)
Q Consensus 518 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (686)
.|++++|..+|+......|.+...+..|..++...|-. ++.++
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~-d~key 715 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-DAKEY 715 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch-hHHHH
Confidence 89999999999999999999999999999999888843 34443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-12 Score=132.61 Aligned_cols=515 Identities=13% Similarity=0.080 Sum_probs=349.8
Q ss_pred HHhcCCcHHHHHHhccCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CcchHHHHHHHHHhcChhhHHHH
Q 005642 51 YMRCGNPTDALLLFDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQLFNVMP--QK-NDFSWNMLISGFAKADLAALEYG 124 (686)
Q Consensus 51 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~-~~~~~~~ll~~~~~~~~~~~~~a 124 (686)
+...|++++|..++.++++. +..+|..|...|-..|+.++++..+-..- .| |..-|..+-.-..+. +.+.+|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~--~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL--GNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc--ccHHHH
Confidence 33459999999999999863 66789999999999999999988765442 23 445566555555555 679999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCCh----hhH----HHHHHHHHccCCHHHHHHHHhh
Q 005642 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD----FCL----SALISGYANCGKMNDARRVFDR 196 (686)
Q Consensus 125 ~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~----~~li~~~~~~g~~~~A~~~~~~ 196 (686)
.-++...++..+ ++....-.-+..|-+.|+...|..-|.++.+.+. .-. ...+..+...++.+.|.+.++.
T Consensus 227 ~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999998863 3555555567788899999999998888875222 222 2345557777888999998887
Q ss_pred cCC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHH--------------------------HHHHH
Q 005642 197 TTD-----TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL--------------------------ASVLS 245 (686)
Q Consensus 197 ~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------------------------~~ll~ 245 (686)
... -+-..++.++..+.+...++.+......+......+|..-+ ..+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 654 23557889999999999999999998888762222222211 12333
Q ss_pred HHHccCChhhHHHHHHHHHHcCC--CchHHHHHHHHHHHHhcCChhHHHHHHHhcccC----CchhHHHHHHHHHhCCCH
Q 005642 246 ACSSLGFLEHGKQVHGHACKVGV--IDDVIVASALLDTYSKRGMPSDACKLFSELKVY----DTILLNTMITVYSSCGRI 319 (686)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~ 319 (686)
++.+....+....+...+.+.+. ..+...|.-+.++|...|++.+|+.+|..+... +...|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 44566666777777777777764 345668889999999999999999999998732 566899999999999999
Q ss_pred HHHHHHHhhCCCCCc---hhHHHHHHHHHhCCChhhHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHccCChHHH
Q 005642 320 EDAKHIFRTMPNKSL---ISWNSMIVGLSQNGSPIEALDLFCNMNK--------LDLRMDKFSLASVISACANISSLELG 388 (686)
Q Consensus 320 ~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~~~~~~a 388 (686)
++|.+.|+.....++ ..--.+...+.+.|++++|.+.+..+.. .+..|+..........+...|+.++-
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999877444 3444566778899999999999988642 23445555555666667778887775
Q ss_pred HHHHHHHHHhCCC-----c-----------------chhHHHHHHHHHHhchh--------HHHHHHHHHHHCCCCCCH-
Q 005642 389 EQVFARVTIIGLD-----S-----------------DQIISTSLVDFYCKCGY--------DALALFNEMRNTGVKPTI- 437 (686)
Q Consensus 389 ~~~~~~~~~~~~~-----~-----------------~~~~~~~li~~~~~~~~--------~A~~~~~~m~~~~~~p~~- 437 (686)
..+-..|+..... | .......++.+-.+.++ .+-..+.--...|...+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 5555554432110 1 00111111222222111 000111111112222222
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChh----HHHHHHHHHHhcCChHHHHHHHHhCC------CCCC-H
Q 005642 438 -ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE----HYSCMVDLFARAGCLNEAVNLIEQMP------FEAD-V 505 (686)
Q Consensus 438 -~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~-~ 505 (686)
..+.-++..+++.+++++|+.+...+....-+.-+.. .-...+.+....+++..|...++.+- ..|. .
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3556677788899999999999988874332222332 33556667778899999999988872 1332 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-chhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPEN-ACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..|+...+...+.++-.--.+.+..+....|++ +......+......+.|..|..++-.+...
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~ 769 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ 769 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh
Confidence 457766666777776666666777777677776 444555566777888899999877766654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-10 Score=115.28 Aligned_cols=468 Identities=12% Similarity=0.035 Sum_probs=358.6
Q ss_pred hcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 005642 84 KLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 161 (686)
Q Consensus 84 ~~g~~~~A~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 161 (686)
...+.+.|.-++.+..+ |.. .-|.-++++. ..++.|..++...++. ++-+..+|.+-...--.+|+.+...+
T Consensus 388 elE~~~darilL~rAveccp~s---~dLwlAlarL--etYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECCPQS---MDLWLALARL--ETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred hccChHHHHHHHHHHHHhccch---HHHHHHHHHH--HHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 34456667777777766 321 2233445555 6788888898888775 67788888877777778898888888
Q ss_pred HHhccC--------CCChhhHHHHHHHHHccCCHHHHHHHHhhcCC------CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 005642 162 VLNMMK--------EPDDFCLSALISGYANCGKMNDARRVFDRTTD------TSSVMWNSMISGYISNNEDTEALLLFHK 227 (686)
Q Consensus 162 ~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 227 (686)
++++-. +-+...|-.=...|-+.|.+-.+..+...... .-..+|+.-...|.+.+.++-|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 887654 13445555555666667777766666665432 1245888889999999999999999988
Q ss_pred HHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCch
Q 005642 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTI 304 (686)
Q Consensus 228 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~ 304 (686)
.++- ++-+...|......--..|..+....++++++.. .+-....|.....-+-..|++..|..++..+- +.+..
T Consensus 542 alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee 619 (913)
T KOG0495|consen 542 ALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE 619 (913)
T ss_pred HHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH
Confidence 8874 3445566666666666778899999999999887 34466677777788888899999999988776 33556
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHhhCCC--CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc
Q 005642 305 LLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD-KFSLASVISACAN 381 (686)
Q Consensus 305 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 381 (686)
.|-.-+.....+.+++.|..+|.+... +....|.--+...--.+..++|++++++..+. -|+ ...|..+...+.+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 788888899999999999999988765 44556665555556678899999999888875 455 4566677777788
Q ss_pred cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 005642 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459 (686)
Q Consensus 382 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 459 (686)
.++.+.|...|..=.+. ++..+..|-.|...--+.|. .|..++++..-.+++ +...|...|..-.+.|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHH
Confidence 88888888877653332 34456677777777777766 899999998877655 778899999999999999999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 005642 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 539 (686)
..+..+ ..+.+...|..-|.+..+.++-..+.+.+++... |+...-.+...+....+++.|..-|.+++..+|++.
T Consensus 776 makALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 776 MAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 998884 3445778888888888888888888888888764 455566677888889999999999999999999999
Q ss_pred hhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 540 CAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.+|..+..-+.+.|.-++-.++++.-..
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 9999999999999999999999886554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-10 Score=118.80 Aligned_cols=531 Identities=13% Similarity=0.097 Sum_probs=354.4
Q ss_pred ccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhcc---CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 005642 17 THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE---MPRRNCFSWNAMIEGFMKLGHKEKSLQ 93 (686)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~ 93 (686)
..|+.++|..+...+++....... .|..|...|-..|+.+++...+=- ....|..-|-.+.....+.|++++|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~--ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPI--AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchh--hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 349999999999999998755544 899999999999999999976633 234577899999999999999999999
Q ss_pred HHhhCCCCCcchHHHH---HHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHH----HHHHHHhcCChHHHHHHHhcc
Q 005642 94 LFNVMPQKNDFSWNML---ISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSS----LVNLYGKCGDFNSANQVLNMM 166 (686)
Q Consensus 94 ~~~~m~~~~~~~~~~l---l~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~ 166 (686)
.|.+.++.+..-|..+ ...|-+. |+...|..-+.++....++.|..-... .+..|...++-+.|.+.++..
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~--G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKT--GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHh--ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999987332223322 2334444 778888888888888765444444433 345566677779999988887
Q ss_pred CC-----CChhhHHHHHHHHHccCCHHHHHHHHhhcCC--------------------------CChhhHH----HHHHH
Q 005642 167 KE-----PDDFCLSALISGYANCGKMNDARRVFDRTTD--------------------------TSSVMWN----SMISG 211 (686)
Q Consensus 167 ~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~----~li~~ 211 (686)
.. -+...++.++..+.+...++.|......... ++..+|. -+.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 64 3445688888999998888888877654322 1111121 22233
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh
Q 005642 212 YISNNEDTEALLLFHKMRRNGVLE--DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289 (686)
Q Consensus 212 ~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 289 (686)
+...+..+....+.......++.| +...|.-+..++...|++..|..++..+......-+..+|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 334444444444455555555434 556788899999999999999999999999876667889999999999999999
Q ss_pred HHHHHHHhcccC---CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCch------------hHHHHHHHHHhCCChhhHH
Q 005642 290 DACKLFSELKVY---DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI------------SWNSMIVGLSQNGSPIEAL 354 (686)
Q Consensus 290 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~A~ 354 (686)
+|...|+.+... +...-..|...+.+.|+.++|.+.+..+..||.. .-......+.+.|+.++=+
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999998733 4556667888999999999999999998776631 1223445667788877755
Q ss_pred HHHHHHHHCC-----CCC-----------------CHHHHHHHHHHHHccCChHHHHHHHH------HHHHhCCCcch--
Q 005642 355 DLFCNMNKLD-----LRM-----------------DKFSLASVISACANISSLELGEQVFA------RVTIIGLDSDQ-- 404 (686)
Q Consensus 355 ~~~~~m~~~g-----~~p-----------------~~~t~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~~~~~-- 404 (686)
..-..|.... +-| ...+...++.+-.+.++.....+-.. .....|+..+.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 5544443321 111 11222233333333333222111111 11112222221
Q ss_pred hHHHHHHHHHHhchh--HHHHHHHHHHHCCCC-CCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--C-Chh
Q 005642 405 IISTSLVDFYCKCGY--DALALFNEMRNTGVK-PTII----TFTAILSACDHCGLVKEGQKWFDAMKWQYHID--P-EIE 474 (686)
Q Consensus 405 ~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~-p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--p-~~~ 474 (686)
..+.-++..+++.+. +|+.+...+...... -+.. .-...+.++...+++..|...++.+....+.. | ...
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 244556777777777 888888887765421 1222 22344556778999999999999998654433 3 245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhh
Q 005642 475 HYSCMVDLFARAGCLNEAVNLIEQM-PFEADV--GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551 (686)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 551 (686)
.|+...+.+.+.|+-.--.+++..+ ...|+. +.......-....+.+..|++.+.++....|++|.+-..++.++..
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 6666666777766655555555544 223322 2222223335567889999999999999999988877666666543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.9e-11 Score=112.72 Aligned_cols=419 Identities=14% Similarity=0.117 Sum_probs=221.9
Q ss_pred cCccchhhHHHHHHHHhCCCCCchhhHHHHHHH--HHhcCCcHH-HHHHhccCCC---CChhhHHHHHHHHHhcCCHHHH
Q 005642 18 HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQM--YMRCGNPTD-ALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKS 91 (686)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~--~~~~g~~~~-A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 91 (686)
.|....+--++++|.+.|.+-++- +-..|... |-...++.- -.+.|-.|.. .+..+| +.|...+
T Consensus 128 ~~EvKDs~ilY~~m~~e~~~vS~k-vq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~vAd- 197 (625)
T KOG4422|consen 128 SREVKDSCILYERMRSENVDVSEK-VQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAVAD- 197 (625)
T ss_pred hcccchhHHHHHHHHhcCCCCCHH-HHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccHHH-
Confidence 455666667778888777666655 44444432 222222222 2234444442 223333 2233322
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccC----
Q 005642 92 LQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK---- 167 (686)
Q Consensus 92 ~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 167 (686)
-+|+.. -....|++++|++.++- -..+.|..++........+.+..++|.+|.+-.-..+ .+++.+|.
T Consensus 198 -L~~E~~-PKT~et~s~mI~Gl~K~--~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 198 -LLFETL-PKTDETVSIMIAGLCKF--SSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred -HHHhhc-CCCchhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 223332 23455666777766665 4566666666666666666666777766655433222 34444443
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 005642 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247 (686)
Q Consensus 168 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 247 (686)
.||..|+|+++++..+.|+++.|.. .|++++.+|++-|+.|...+|..++..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f 322 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNF 322 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHh
Confidence 3554444444444444444443332 2445555555556666666666555555
Q ss_pred HccCChhh-HHHHHHHHHHc----CC----CchHHHHHHHHHHHHhcCChhHHHHHHHhcc--------cCC---chhHH
Q 005642 248 SSLGFLEH-GKQVHGHACKV----GV----IDDVIVASALLDTYSKRGMPSDACKLFSELK--------VYD---TILLN 307 (686)
Q Consensus 248 ~~~~~~~~-a~~~~~~~~~~----g~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~---~~~~~ 307 (686)
.+.++..+ +..++.++... .+ +.|...+..-+..|.+..+.+-|.++-.-.. .++ ..-|.
T Consensus 323 ~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr 402 (625)
T KOG4422|consen 323 KRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYR 402 (625)
T ss_pred cccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHH
Confidence 55544432 22233332221 11 1133344444555555555555555443333 111 12344
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCC----CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 005642 308 TMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383 (686)
Q Consensus 308 ~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 383 (686)
.+....|+....+.-...++.|.. |++.+...++.+..-.|.++-.-+++.++...|..-.....
T Consensus 403 ~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------- 471 (625)
T KOG4422|consen 403 KFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------- 471 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH-----------
Confidence 555666666667777777777764 56667777778888888888888888888876643333222
Q ss_pred ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh---H-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 005642 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---D-ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459 (686)
Q Consensus 384 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~-A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 459 (686)
+.++..+.+..+.|+...-..+-....++-. + ....-.+|.+..+ .....+.++..+.+.|..++|.++
T Consensus 472 -----eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~ 544 (625)
T KOG4422|consen 472 -----EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEM 544 (625)
T ss_pred -----HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHH
Confidence 2333333333333433322223233333222 1 1122334444433 445566677778999999999999
Q ss_pred HHHHHHhcCCCCChhHHH---HHHHHHHhcCChHHHHHHHHhC
Q 005642 460 FDAMKWQYHIDPEIEHYS---CMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
+..+.+..+--|-....+ -+++.-.+..+...|...++-+
T Consensus 545 l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 545 LGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999865555455555555 4445555667777777777766
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-13 Score=135.93 Aligned_cols=279 Identities=11% Similarity=0.030 Sum_probs=209.2
Q ss_pred ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccC------CchhHHHHHHHHHhCCCHHHHHHH
Q 005642 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY------DTILLNTMITVYSSCGRIEDAKHI 325 (686)
Q Consensus 252 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 325 (686)
+..+|...|..+-.. ..-+..+..-+..+|...+++++|.++|+.+... +...|.+.+.-+.+.-.+.---+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 456677777774443 3334466677788888888888888888877622 455666666554443322222222
Q ss_pred HhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcch
Q 005642 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404 (686)
Q Consensus 326 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 404 (686)
+-.+....+.+|.++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+.. ++
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~ 486 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DP 486 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----Cc
Confidence 2223334678899999999888999999998888876 345 5677777777777777888888887766532 11
Q ss_pred hHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHH
Q 005642 405 IISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLF 483 (686)
Q Consensus 405 ~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 483 (686)
. +...|-.+...|.+.++++.|.-.|+++. .+.| +......++..+
T Consensus 487 r------------------------------hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 487 R------------------------------HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQ 533 (638)
T ss_pred h------------------------------hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHH
Confidence 1 33467778888999999999999999987 6778 678888899999
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHH
Q 005642 484 ARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561 (686)
Q Consensus 484 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (686)
.+.|+.++|+++|+++ ...| |+..--..+..+...+++++|++.++++.++-|++..++..++.+|.+.|+.+.|..-
T Consensus 534 ~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred HHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 9999999999999998 3444 4555555677788899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC
Q 005642 562 RDIMREKHV 570 (686)
Q Consensus 562 ~~~~~~~~~ 570 (686)
+.-+.+..+
T Consensus 614 f~~A~~ldp 622 (638)
T KOG1126|consen 614 FSWALDLDP 622 (638)
T ss_pred hHHHhcCCC
Confidence 887776543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.2e-10 Score=110.46 Aligned_cols=503 Identities=14% Similarity=0.119 Sum_probs=313.0
Q ss_pred HHHHHHHhhccCccchhhHHHHHHHHh-CCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcC
Q 005642 8 LARLLQSCNTHHSIHVGKQLHLHFLKK-GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86 (686)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 86 (686)
+...+.-.-..+++...+..|.+.+.. .+..+.. +|...+.+....|-++-+..++++-.+-++..-+.-|..++..+
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~r-IW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDR-IWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhcc-chHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 333333444456666777777777654 4556666 88888888888888888888888877767777788888889999
Q ss_pred CHHHHHHHHhhCCCC----------CcchHHHHHHHHHhcChhhHHH---HHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 005642 87 HKEKSLQLFNVMPQK----------NDFSWNMLISGFAKADLAALEY---GKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153 (686)
Q Consensus 87 ~~~~A~~~~~~m~~~----------~~~~~~~ll~~~~~~~~~~~~~---a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~ 153 (686)
++++|-+.+...... +...|.-+-...++. .+.-. ...+...++..-..-=...|++|.+.|.+.
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~--p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN--PDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC--cchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 999999998887641 233455554444444 12222 222333333221222245799999999999
Q ss_pred CChHHHHHHHhccCC--CChhhHHHHHHHHHc----------------cC------CHHHHHHHHhhcCC----------
Q 005642 154 GDFNSANQVLNMMKE--PDDFCLSALISGYAN----------------CG------KMNDARRVFDRTTD---------- 199 (686)
Q Consensus 154 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~----------------~g------~~~~A~~~~~~~~~---------- 199 (686)
|+++.|..++++... -++.-|..+.+.|.+ .| +++-....|+.+..
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 999999999988774 233334444444431 11 22223333443322
Q ss_pred -----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC------HHHHHHHHHHHHccCChhhHHHHHHHHHHcCC
Q 005642 200 -----TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED------ASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268 (686)
Q Consensus 200 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 268 (686)
.++..|..-+.. ..|+..+-+..|.+..+. +.|. ...|..+.+.|-..|+++.|+.+|++..+...
T Consensus 342 LRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 134455544443 467788888888888765 4442 33577788888899999999999999988765
Q ss_pred Cch---HHHHHHHHHHHHhcCChhHHHHHHHhcc-cC--------------------CchhHHHHHHHHHhCCCHHHHHH
Q 005642 269 IDD---VIVASALLDTYSKRGMPSDACKLFSELK-VY--------------------DTILLNTMITVYSSCGRIEDAKH 324 (686)
Q Consensus 269 ~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~--------------------~~~~~~~li~~~~~~g~~~~A~~ 324 (686)
+.- ..+|..-..+=.+..+++.|.++.++.. -| +...|...++..-..|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 432 3466666777777888889998888765 11 22345666666667788888888
Q ss_pred HHhhCCCCCchhH---HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHH---ccCChHHHHHHHHHHHH
Q 005642 325 IFRTMPNKSLISW---NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK-FSLASVISACA---NISSLELGEQVFARVTI 397 (686)
Q Consensus 325 ~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---~~~~~~~a~~~~~~~~~ 397 (686)
+++++.+--+.|= -+....+-.+.-++++.++|++-+..=-.|+. ..|+..+.-+. ...+++.|..+|++.++
T Consensus 499 vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 8888876322222 22222334455677888887765544223443 23444444433 33478889999998888
Q ss_pred hCCCcchhHHHHHHHHHHhchh------HHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 005642 398 IGLDSDQIISTSLVDFYCKCGY------DALALFNEMRNTGVKPTI--ITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469 (686)
Q Consensus 398 ~~~~~~~~~~~~li~~~~~~~~------~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 469 (686)
|++|. ....+.-.|++..+ .|+.++++... ++++.. ..|+..|.--+..=-+....++|++.++ .
T Consensus 579 -~Cpp~--~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe---~ 651 (835)
T KOG2047|consen 579 -GCPPE--HAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE---S 651 (835)
T ss_pred -cCCHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH---h
Confidence 55543 23333344444443 78888888644 344333 4577776644443334455677777763 2
Q ss_pred CCChh---HHHHHHHHHHhcCChHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCChhH
Q 005642 470 DPEIE---HYSCMVDLFARAGCLNEAVNLIEQMP--FEA--DVGMWSSILRGCVAHGDKGL 523 (686)
Q Consensus 470 ~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p--~~~~~~~li~~~~~~g~~~~ 523 (686)
-|+.. ...-..+.=.+.|.++.|..+|.-.. ..| +...|.+.=.--.++|+-+.
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 35433 33334455667888888888887663 344 45567777777778888444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-11 Score=114.70 Aligned_cols=284 Identities=12% Similarity=0.121 Sum_probs=185.7
Q ss_pred HHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccC------CchhHHHHHHHHHhCCC
Q 005642 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY------DTILLNTMITVYSSCGR 318 (686)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~ 318 (686)
.++......+++.+-.+.....|++.+...-+-...+.....++|+|+.+|+++.+. |..+|+.++-+--...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344444556666666666666666555555555555556666666666666666632 33455555443333222
Q ss_pred HHH-HHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 319 IED-AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 319 ~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
+.- |..++ .+.+=-+.|...+..-|.-.++.++|...|+...+.+ +-....++.+..-|...++...|.+.++.+++
T Consensus 315 Ls~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 315 LSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 221 22222 2233345667777777788888888888888887742 22334566666667777777777777777665
Q ss_pred hCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHH
Q 005642 398 IGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHY 476 (686)
Q Consensus 398 ~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~ 476 (686)
.+ +.|...|-.|.++|.-.+...-|+-+|++.. ..+| |...|
T Consensus 393 i~----------------------------------p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw 435 (559)
T KOG1155|consen 393 IN----------------------------------PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLW 435 (559)
T ss_pred cC----------------------------------chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHH
Confidence 43 2266778888888888888888888888876 4566 78888
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc-------cCCCCchhHHHHHH
Q 005642 477 SCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIE-------LDPENACAYIQLSS 547 (686)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~ 547 (686)
.+|+++|.+.++.++|++-|...- ...+...+..+...+.+.++.++|.+.+++.++ ..|+...+..-|+.
T Consensus 436 ~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~ 515 (559)
T KOG1155|consen 436 VALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAE 515 (559)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 888888888888888888888773 222446677888888888888888888887777 33433344445667
Q ss_pred HHhhcCCcchHHHHHHHHHh
Q 005642 548 IFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~ 567 (686)
-+.+.+++++|..+......
T Consensus 516 ~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 516 YFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHhhcchHHHHHHHHHHhc
Confidence 77788888888887665543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-09 Score=106.20 Aligned_cols=437 Identities=13% Similarity=0.107 Sum_probs=245.0
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC--CCh-hhHHHHHHHHHccCCHHHHHHHHhh
Q 005642 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDD-FCLSALISGYANCGKMNDARRVFDR 196 (686)
Q Consensus 120 ~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 196 (686)
+...|..+++..+... ..++..|-..+.+-.++..+..|+.++++... |-+ ..|--.+-+=-..|++..|.++|++
T Consensus 88 e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 88 EIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4444444444444433 22444444444555555555555555555442 211 1233333333344555555555554
Q ss_pred cC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHc-CC-CchH
Q 005642 197 TT--DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GV-IDDV 272 (686)
Q Consensus 197 ~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~ 272 (686)
-. +|+..+|++.|..-.+.+..+.|..+|++..- +.|+..+|..-.+.=.+.|.+..+..+|+.+++. |- ..+.
T Consensus 167 W~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 167 WMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred HHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 33 25555555555555555555555555555544 3455555555555555555555555555555442 10 0111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcc---cCC--chhHHHHHHHHHhCCCHHHHHHH--------HhhCCCCCc---hh
Q 005642 273 IVASALLDTYSKRGMPSDACKLFSELK---VYD--TILLNTMITVYSSCGRIEDAKHI--------FRTMPNKSL---IS 336 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~~~---~~ 336 (686)
..+.+....=.++..++.|.-+|+-.. +.+ ...|..+..---+-|+.....+. ++.+...|+ .+
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDs 324 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDS 324 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchH
Confidence 223333333333444555555544333 111 12222222222222332222111 122222333 45
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---HccCChHHHHHHHHHHHHhCCCcchhH
Q 005642 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF-------SLASVISAC---ANISSLELGEQVFARVTIIGLDSDQII 406 (686)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~ 406 (686)
|--.+..--..|+.+...++|++.+.. ++|-.. .|.-+--+| ....+.+.+.++|+..++. ++....+
T Consensus 325 WfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFt 402 (677)
T KOG1915|consen 325 WFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFT 402 (677)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccch
Confidence 555555555667777777777777654 444221 111111111 2456777777777776662 3444555
Q ss_pred HHHHHHHHHhch----h--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHH
Q 005642 407 STSLVDFYCKCG----Y--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCM 479 (686)
Q Consensus 407 ~~~li~~~~~~~----~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l 479 (686)
+.-+--+|++-. + .|.+++-... |..|-.-+|...|..-.+.+++|....++++.. ...| +..+|...
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPENCYAWSKY 477 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChHhhHHHHHH
Confidence 555544444322 1 5666666555 667888889988888889999999999999988 3556 78888888
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh-----
Q 005642 480 VDLFARAGCLNEAVNLIEQMPFEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA----- 550 (686)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~----- 550 (686)
...=...|+.+.|..+|+-+..+|. ...|.+.|+--...|.++.|..+|+++++..+. ..+|...+.--.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h-~kvWisFA~fe~s~~~~ 556 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH-VKVWISFAKFEASASEG 556 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc-chHHHhHHHHhcccccc
Confidence 8888889999999999998854553 455888888888899999999999999997774 446877776544
Q ss_pred hcC-----------CcchHHHHHHHHHh
Q 005642 551 TSG-----------EWEKSSLIRDIMRE 567 (686)
Q Consensus 551 ~~g-----------~~~~a~~~~~~~~~ 567 (686)
+.| +...|..+|+....
T Consensus 557 ~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 557 QEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 334 55567777776653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-09 Score=103.78 Aligned_cols=454 Identities=11% Similarity=0.079 Sum_probs=325.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 005642 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN---DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 147 (686)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~ 147 (686)
+...|-.-...--.++++..|.++|++....| ...|.-.+..=.+. ..+..|..+++..+..-+..|. .|--.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emkn--k~vNhARNv~dRAvt~lPRVdq-lWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKN--KQVNHARNVWDRAVTILPRVDQ-LWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhh--hhHhHHHHHHHHHHHhcchHHH-HHHHHH
Confidence 34455555555566788888999999987743 33333333332332 5677888899888876444343 333444
Q ss_pred HHHHhcCChHHHHHHHhccC--CCChhhHHHHHHHHHccCCHHHHHHHHhhc--CCCChhhHHHHHHHHHhcCChhHHHH
Q 005642 148 NLYGKCGDFNSANQVLNMMK--EPDDFCLSALISGYANCGKMNDARRVFDRT--TDTSSVMWNSMISGYISNNEDTEALL 223 (686)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 223 (686)
-+--..|++..|+++|++-. +|+...|.+.|..=.+-+.++.|..++++. ..|++.+|--...--.++|+...|..
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 44456799999999999877 599999999999999999999999999985 46889999988888889999999999
Q ss_pred HHHHHHHCCCCc---CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCch--HHHHHHHHHHHHhcCChhHHHHHH---
Q 005642 224 LFHKMRRNGVLE---DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD--VIVASALLDTYSKRGMPSDACKLF--- 295 (686)
Q Consensus 224 ~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~--- 295 (686)
+|....+. +.. +...|.+....=.+...++.|.-+|+..+..= +.+ ...|..+...=-+-|+........
T Consensus 229 VyerAie~-~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 229 VYERAIEF-LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 99988764 211 22233333333346678899999999988863 333 445666665555667755444432
Q ss_pred -----Hhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc-----hhHHHHHH--------HHHhCCChhhHH
Q 005642 296 -----SELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL-----ISWNSMIV--------GLSQNGSPIEAL 354 (686)
Q Consensus 296 -----~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~li~--------~~~~~g~~~~A~ 354 (686)
+.+. +-|-.+|-..++.-...|+.+...++|++....-+ ..|...|. .=....+.+.+.
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2222 33566788888888889999999999999865221 12222221 123568899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH----HccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHH
Q 005642 355 DLFCNMNKLDLRMDKFSLASVISAC----ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEM 428 (686)
Q Consensus 355 ~~~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m 428 (686)
++|+...+. ++....||..+=-.+ .+..++..|.+++..++ |..|...++...|+.-.+.++ .+..++++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999884 666677877543333 47789999999999876 667888888888877777766 889999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 005642 429 RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGM 507 (686)
Q Consensus 429 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 507 (686)
.+-++. |..+|......-...|+.|.|..+|+-++.+..+......|...|+.-...|.++.|..+|+++ ...+...+
T Consensus 464 le~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 464 LEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred HhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 887644 6788888888888899999999999999855444445667888888888999999999999998 34455557
Q ss_pred HHHHHHHHH-----hcC-----------ChhHHHHHHHHHHc
Q 005642 508 WSSILRGCV-----AHG-----------DKGLGRKVAERMIE 533 (686)
Q Consensus 508 ~~~li~~~~-----~~g-----------~~~~A~~~~~~~~~ 533 (686)
|-++..--. ..+ ++..|..+|+++..
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 766655432 333 46677888887776
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.6e-12 Score=121.19 Aligned_cols=198 Identities=16% Similarity=0.225 Sum_probs=127.4
Q ss_pred CCCHHHHHHHHhhCCCCCchhH---HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 005642 316 CGRIEDAKHIFRTMPNKSLISW---NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392 (686)
Q Consensus 316 ~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 392 (686)
.|++++|.+.+.+....|...- ..+...+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 4455555555555544443222 22223344556666666665555432 2334445555555566666666666665
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 005642 393 ARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID 470 (686)
Q Consensus 393 ~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 470 (686)
.+.... ++.++.+.+.|.+.|-+.|+ +|+...-+--. -++.+..|..-|...|....-+++++.+|++.. -+.
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa---liq 656 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQ 656 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcC
Confidence 544332 34556666666666666666 44444333221 245577888888888999999999999999876 578
Q ss_pred CChhHHHHHHHHH-HhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 005642 471 PEIEHYSCMVDLF-ARAGCLNEAVNLIEQM--PFEADVGMWSSILRGCVAHG 519 (686)
Q Consensus 471 p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g 519 (686)
|+..-|..|+..| .+.|++.+|+++|+.. +++.|...+..|++.|...|
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 9999998877654 5789999999999988 36668888888888887776
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-14 Score=141.54 Aligned_cols=221 Identities=14% Similarity=0.218 Sum_probs=106.8
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 005642 309 MITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385 (686)
Q Consensus 309 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 385 (686)
+.......++.+.|...++++... ++..+..++.. ...+++++|.+++.+..+. .++...+...+..+.+.+++
T Consensus 50 ~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~ 126 (280)
T PF13429_consen 50 LADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDY 126 (280)
T ss_dssp -----------------------------------------------------------------------H-HHHTT-H
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHH
Confidence 333333444444444444444432 23345555555 5677777777777665543 24455556666667777777
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005642 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465 (686)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (686)
+++.++++.+.... ..+++...|..+...+.+.|+.++|++.+++..+
T Consensus 127 ~~~~~~l~~~~~~~--------------------------------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 127 DEAEELLEKLEELP--------------------------------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp HHHHHHHHHHHH-T-----------------------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--------------------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777766654321 1234777888888889999999999999999883
Q ss_pred hcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 005642 466 QYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542 (686)
Q Consensus 466 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 542 (686)
..| +......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++....|+|+...
T Consensus 175 ---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 175 ---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp ---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred ---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 456 57888899999999999999888887763 234566788899999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 543 IQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
..++.++...|+.++|.++++++.+
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999886653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.9e-11 Score=114.36 Aligned_cols=218 Identities=16% Similarity=0.130 Sum_probs=167.2
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhch--hHH
Q 005642 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDA 421 (686)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~A 421 (686)
+.-.|+.-.|..-|+..+.....++. .|.-+...|....+.++..+.|.++.+.+.. ++.+|..-.+++.-.+ ++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 34568888999999999886433333 2777777889999999999999999887643 3444443333333333 388
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 005642 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-P 500 (686)
Q Consensus 422 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 500 (686)
..=|++....... +...|..+..+.-+.++++++...|++.++ .++..++.|+....++..++++++|.+.|+.. .
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 8889888765322 446677777777788999999999999984 45557899999999999999999999999987 3
Q ss_pred CCCC---------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 501 FEAD---------VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 501 ~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+.|+ +.+.-.++.. .-.+++..|..+++++++++|....+|..|+.+-.+.|+.++|+++|++...
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4443 2222222222 2348999999999999999999999999999999999999999999997764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-10 Score=119.91 Aligned_cols=520 Identities=11% Similarity=0.041 Sum_probs=297.5
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 005642 27 LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR----NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102 (686)
Q Consensus 27 ~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 102 (686)
.+..+-..|+.|... +|..|+.-|+..|+.+.|- +|.-|.-+ +...++.++.+..+.|+.+.+. +|.
T Consensus 12 fla~~e~~gi~PnRv-tyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALHEISGILPNRV-TYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHHHHhcCCCchh-hHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 445556667777776 7777777777777777776 66666532 3345666666666666655544 556
Q ss_pred cchHHHHHHHHHhcChhhH---HHHHHHHHHHH----HcC-----------------CCCChhHHHHHHHHHHhcCChHH
Q 005642 103 DFSWNMLISGFAKADLAAL---EYGKQIHSHIL----VNG-----------------LDFDSVLGSSLVNLYGKCGDFNS 158 (686)
Q Consensus 103 ~~~~~~ll~~~~~~~~~~~---~~a~~i~~~~~----~~g-----------------~~~~~~~~~~l~~~~~~~g~~~~ 158 (686)
..||..|+.+|.+. ||+ +..++.+..+. ..| .-||.. +.+....-.|.++.
T Consensus 83 aDtyt~Ll~ayr~h--GDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaq 157 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIH--GDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQ 157 (1088)
T ss_pred hhHHHHHHHHHHhc--cchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHH
Confidence 66677777777665 333 22222121111 112 122222 23333444577788
Q ss_pred HHHHHhccCC--CChhhHHHHHHHHHc-cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 005642 159 ANQVLNMMKE--PDDFCLSALISGYAN-CGKMNDARRVFDRTTD-TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234 (686)
Q Consensus 159 A~~~~~~~~~--~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 234 (686)
+++++..++. .+. .....+.-+.. ...+++-..+-+...+ +++.++.+++..-..+|+.+.|..++.+|++.|++
T Consensus 158 llkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 8888877773 111 11112333332 2334444444445544 88999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHH
Q 005642 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314 (686)
Q Consensus 235 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 314 (686)
.+.+-|-.++-+ .++...+..+++.|...|+.|+..|+...+-.+.++|....+... .+....+++-+..-+
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAA 308 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHH
Confidence 998877777765 788888999999999999999999998877777776553322221 112222222222222
Q ss_pred hCCCHHHHHHHHhh---------CCC-------CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCC--CCC-CHHHHHHH
Q 005642 315 SCGRIEDAKHIFRT---------MPN-------KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD--LRM-DKFSLASV 375 (686)
Q Consensus 315 ~~g~~~~A~~~~~~---------~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p-~~~t~~~l 375 (686)
-.| ..|.+.++. .++ .....|... .-...+|+-++...+-..|..-- ..+ +...|..+
T Consensus 309 ~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~ 385 (1088)
T KOG4318|consen 309 CRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL 385 (1088)
T ss_pred hcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHH
Confidence 222 222222221 111 111233322 22333677777777766664321 122 22334444
Q ss_pred HHHHHccCChHHHHHHHH--HHHHhCCCcchhHHHHHHHHHHhchh-HHHHHHHHHHH----CCCCC-------CHHHHH
Q 005642 376 ISACANISSLELGEQVFA--RVTIIGLDSDQIISTSLVDFYCKCGY-DALALFNEMRN----TGVKP-------TIITFT 441 (686)
Q Consensus 376 l~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~li~~~~~~~~-~A~~~~~~m~~----~~~~p-------~~~~~~ 441 (686)
+.-|.+.-...-...++. ..+... .+...---+.+...+... .+++-+..+.. +...| -...-+
T Consensus 386 lrqyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 386 LRQYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 444433322111111111 111110 000000011111111111 11221111111 11111 122345
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHH
Q 005642 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-----FEADVGMWSSILRGCV 516 (686)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~li~~~~ 516 (686)
.++..|++.-+..+++..-+... ..-+ ...|..|++.+......+.|..+.++.. +.-|..-+..+.+.+.
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 56667777767777765544443 1111 2678999999999999999999999884 3345666788888899
Q ss_pred hcCChhHHHHHHHHHHc---cCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCccce
Q 005642 517 AHGDKGLGRKVAERMIE---LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWA 579 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 579 (686)
+.+....+..+++++.+ ..|....+...+.+.....|+.+...+.++-+...|+.. .+..|.
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWM 604 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccceE
Confidence 99999999998888877 334445666777777888999999999999998888876 354444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-10 Score=112.73 Aligned_cols=295 Identities=12% Similarity=0.080 Sum_probs=165.0
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCch-hHHHHHHHHHhC
Q 005642 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI-SWNSMIVGLSQN 347 (686)
Q Consensus 269 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~ 347 (686)
..|...+-.....+.+.|....|+..|......-+..|.+-+....-..+.+.+..+....+..+.. .--.+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 3344444444555556666666777666665444444444443333333444443333333332211 111233445555
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--cchhHHHHHHHHHHh---------
Q 005642 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD--SDQIISTSLVDFYCK--------- 416 (686)
Q Consensus 348 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~--------- 416 (686)
.+.++++.-.......|++.+...-+....+.....++++|+.+|+++.+...- .|..+|+.++-.-..
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 566666666666666666555554455555555667777777777777665321 244455444322222
Q ss_pred ----------------------chh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-
Q 005642 417 ----------------------CGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP- 471 (686)
Q Consensus 417 ----------------------~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p- 471 (686)
.++ +|...|++..+.+.. ....|+.+.+-|....+...|.+.++.++ .+.|
T Consensus 321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~ 396 (559)
T KOG1155|consen 321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPR 396 (559)
T ss_pred HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCch
Confidence 211 666666666654322 23455555566666666666666666665 3445
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
|-..|-.|+++|.-.+.+.-|+-.|++. ..+| |...|.+|..+|.+.++.++|++.|++++...-.+..++..|+.+|
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 5666666666666666666666666665 3444 5666666666666666666666666666665554556666666666
Q ss_pred hhcCCcchHHHHHHHHHh
Q 005642 550 ATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~ 567 (686)
.+.++.++|.+++.+-.+
T Consensus 477 e~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 666666666666655443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-10 Score=114.15 Aligned_cols=344 Identities=11% Similarity=0.053 Sum_probs=168.6
Q ss_pred hHHHHHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhcc--CCCCChhhHHHHHHHH
Q 005642 5 IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE--MPRRNCFSWNAMIEGF 82 (686)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~ 82 (686)
..-+..+.+-|........|.-+-+++...+..|+.. -.+.++|.-.|+++.|..+... +.+.|..+.......+
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~---~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI---YWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCL 92 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH---HHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 3455666777777777777877777777766555443 5677888888899888887754 4467888888899999
Q ss_pred HhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 005642 83 MKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 161 (686)
Q Consensus 83 ~~~g~~~~A~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 161 (686)
.+...+++|+.++..... .+.+.+-.-=.+..- ....+. .. .+.......+-.-...|....+.++|+.
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l----~~n~~~----~~--~~~~~essic~lRgk~y~al~n~~~ar~ 162 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDAANTL----ELNSAG----ED--LMINLESSICYLRGKVYVALDNREEARD 162 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhhhcee----ccCccc----cc--ccccchhceeeeeeehhhhhccHHHHHH
Confidence 999999999999984421 111111100000000 000000 00 0011111112222234445566777777
Q ss_pred HHhccCCCChhhHHHHHHHHHcc-CCHHHHHHHHhhcC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 005642 162 VLNMMKEPDDFCLSALISGYANC-GKMNDARRVFDRTT-----DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235 (686)
Q Consensus 162 ~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 235 (686)
.+.+....|...+..+...-... -..++-..+|+... +.++..-..+.........-++....-.+..-.+..-
T Consensus 163 ~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~ 242 (611)
T KOG1173|consen 163 KYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAE 242 (611)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhh
Confidence 77776655555444433221110 00111222222211 0111111111111100000000100000000112233
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHH
Q 005642 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITV 312 (686)
Q Consensus 236 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 312 (686)
+.........-|...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++. +..+.+|-++..-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 44444444555556666777777766666653 3344444444456666666554444433333 2234455555555
Q ss_pred HHhCCCHHHHHHHHhhCCCCCc---hhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005642 313 YSSCGRIEDAKHIFRTMPNKSL---ISWNSMIVGLSQNGSPIEALDLFCNMNK 362 (686)
Q Consensus 313 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (686)
|...|+.++|++.|.+...-|+ ..|-.....|+-.|..+.|+..|....+
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar 374 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR 374 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH
Confidence 5555666666666655544332 3555566666666666666655554433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.4e-12 Score=126.41 Aligned_cols=279 Identities=11% Similarity=0.052 Sum_probs=222.1
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC------CChhhHHHHHHHHHccCCHHHHHHH
Q 005642 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE------PDDFCLSALISGYANCGKMNDARRV 193 (686)
Q Consensus 120 ~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~ 193 (686)
..+.|...++. ....+..+.++...+..+|...+++++|+++|+.+.+ .+...|++.+..+-+.-...---+-
T Consensus 334 ~~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 45677777777 3344455668899999999999999999999999874 4667888888766543222211112
Q ss_pred HhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchH
Q 005642 194 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272 (686)
Q Consensus 194 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 272 (686)
+-...+..+.+|-++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+..+... +.+-
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhY 489 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHY 489 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhh
Confidence 2223344688999999999999999999999999988 456 67888888888889999999999999988753 2345
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHh
Q 005642 273 IVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQ 346 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 346 (686)
..|..|...|.+.++++.|+-.|+... +.+.+....+...+.+.|+.|+|++++++... .|+..-...+..+..
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 577788999999999999999999887 44566777788899999999999999998764 577777778888899
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcc
Q 005642 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 403 (686)
.+++++|+..++++++. ++-+...|..+...|.+.|+.+.|..-|.-+.+...+..
T Consensus 570 ~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 570 LGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 99999999999999985 334456677888899999999999999998887665443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.9e-11 Score=121.33 Aligned_cols=274 Identities=14% Similarity=0.060 Sum_probs=173.2
Q ss_pred hhHHHHHHHHHHHHHcCCCCChhHHHHH-HHHHHhcCChHHHHHHHhccCC--CChhhHH--HHHHHHHccCCHHHHHHH
Q 005642 119 AALEYGKQIHSHILVNGLDFDSVLGSSL-VNLYGKCGDFNSANQVLNMMKE--PDDFCLS--ALISGYANCGKMNDARRV 193 (686)
Q Consensus 119 ~~~~~a~~i~~~~~~~g~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~~ 193 (686)
|+++.|.+......+.. +++..+..+ ..+..+.|+++.|...+.++.+ |+...+. .....+...|+++.|...
T Consensus 98 Gd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 98 GDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56666665555433321 122222222 3333567778888877777764 4433232 224566777888888777
Q ss_pred HhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHccCChhhHHHHHHHH
Q 005642 194 FDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA-------STLASVLSACSSLGFLEHGKQVHGHA 263 (686)
Q Consensus 194 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~ 263 (686)
+++..+ .++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 776654 34667777788888888888888888888776544322 12333333333444455555555554
Q ss_pred HHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHH
Q 005642 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSM 340 (686)
Q Consensus 264 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 340 (686)
.+. .+.++.....+...+...|+.++|.+.+++..+.....--.++.+....++.+++.+..+...+ .|+..+..+
T Consensus 256 p~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~l 334 (398)
T PRK10747 256 SRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTL 334 (398)
T ss_pred CHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 333 3446667777788888888888888888776643222222334444556777777777776654 244566677
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 341 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
...+.+.+++++|.+.|+.+.+ ..|+..++..+...+.+.|+.++|.+++++...
T Consensus 335 grl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7788888888888888888876 467888777888888888888888888776543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-10 Score=119.02 Aligned_cols=284 Identities=8% Similarity=0.001 Sum_probs=149.7
Q ss_pred cCCHHHHHHHHhhcCCC--Chhh-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHH--HHHHHHHccCChhhHHH
Q 005642 184 CGKMNDARRVFDRTTDT--SSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA--SVLSACSSLGFLEHGKQ 258 (686)
Q Consensus 184 ~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~ 258 (686)
.|+++.|++.+.+..+. ++.. |-.......+.|+++.|.+.|.++.+ ..|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666554432 1222 22223333556666666666666654 234433222 22344555566666666
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCc---hhHHHHHHHHHhCCCHHHHHHHHhhCCCCCch
Q 005642 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT---ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 335 (686)
Q Consensus 259 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 335 (686)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... .....+- ..
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~-----------------------~~ 230 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLE-----------------------QQ 230 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHH-----------------------HH
Confidence 666665554 23445555556666666666666655554432110 0000000 00
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 005642 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415 (686)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 415 (686)
+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+.
T Consensus 231 a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----------------- 292 (398)
T PRK10747 231 AWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR----------------- 292 (398)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----------------
Confidence 1112222222222233333333333221 2233444444455555555555555554443331
Q ss_pred hchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHH
Q 005642 416 KCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVN 494 (686)
Q Consensus 416 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 494 (686)
+|++... ++.+....++.+++.+..+...+ ..| |+..+.++...+.+.|++++|.+
T Consensus 293 ------------------~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk---~~P~~~~l~l~lgrl~~~~~~~~~A~~ 349 (398)
T PRK10747 293 ------------------QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK---QHGDTPLLWSTLGQLLMKHGEWQEASL 349 (398)
T ss_pred ------------------CCCHHHH--HHHhhccCCChHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 2233211 22233455788888888887763 234 56677788888888888888888
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 005642 495 LIEQM-PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534 (686)
Q Consensus 495 ~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 534 (686)
.|+.. ...|+...+..+...+.+.|+.++|.+.+++.+.+
T Consensus 350 ~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 350 AFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88877 46788888778888888888888888888887764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.2e-10 Score=115.94 Aligned_cols=129 Identities=11% Similarity=-0.030 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-H--HHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH---YSCMVDLFARAGCLNEAVNLIEQM-PFEAD-V--GMW 508 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~--~~~ 508 (686)
++..+..+...+...|+.++|.+.+++..+ ..|+... .....-.....++.+.+.+.+++. +..|+ + ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHH
Confidence 667777788888888888888888888873 2343321 111222223356777788877766 34454 3 456
Q ss_pred HHHHHHHHhcCChhHHHHHHH--HHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 509 SSILRGCVAHGDKGLGRKVAE--RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.++...+.+.|++++|.+.++ .+.+..|++.. +..++.++.+.|+.++|.+++++....
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678888888899999988888 57767785544 678888899999999998888876543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-09 Score=97.46 Aligned_cols=467 Identities=12% Similarity=0.029 Sum_probs=247.8
Q ss_pred HHHHhcCCcHHHHHHhccCCCC---ChhhHH-HHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcChhhH
Q 005642 49 QMYMRCGNPTDALLLFDEMPRR---NCFSWN-AMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKADLAAL 121 (686)
Q Consensus 49 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~ 121 (686)
.-+....++..|+.+++--..- .....+ -+...+.+.|++++|+..|..+.+ ++...+. --+|+.--.+.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~v--nLAcc~FyLg~Y 107 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGV--NLACCKFYLGQY 107 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccch--hHHHHHHHHHHH
Confidence 3445567888888887654421 111222 234466788999999999987654 2332222 224444334566
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHH-HHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCC
Q 005642 122 EYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200 (686)
Q Consensus 122 ~~a~~i~~~~~~~g~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 200 (686)
.+|+++-.. .|+....+.|+ ..--+.|+-++-..+-+.+.+ ....--++.+..-..-.+++|+++++++...
T Consensus 108 ~eA~~~~~k------a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 108 IEAKSIAEK------APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHhh------CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666665443 23334444444 333345555444444433332 2233334444444555677888888877654
Q ss_pred C--hhhHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHH
Q 005642 201 S--SVMWNS-MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277 (686)
Q Consensus 201 ~--~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 277 (686)
+ -...|. +.-+|.+..-++-+.+++.--++. ++.++.+.+.......+.=.-..|.+-.+.+.+.+-..-+
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~----- 254 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP----- 254 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----
Confidence 3 233333 344566667777777777776664 3333334443333333332333344444444443311111
Q ss_pred HHHHHHh-----cCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCC---
Q 005642 278 LLDTYSK-----RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS--- 349 (686)
Q Consensus 278 l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~--- 349 (686)
.+.-.++ -.+-+.|.+++-.+...=+.+-..|+--|.+++++.+|..+........+.-|-.-...++..|+
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence 1111122 12335566665554444444555666667777777777777777665455444333333333333
Q ss_pred ----hhhHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHH
Q 005642 350 ----PIEALDLFCNMNKLDLRMDKFS-LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALAL 424 (686)
Q Consensus 350 ----~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~ 424 (686)
..-|...|+..-+++...|... -.++.+++.-..++++.+-.+..+. .|
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~----------------sY---------- 388 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE----------------SY---------- 388 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH----------------HH----------
Confidence 2233334433333333222211 1122222222333333333322221 11
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCCCCC
Q 005642 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY-SCMVDLFARAGCLNEAVNLIEQMPFEA 503 (686)
Q Consensus 425 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p 503 (686)
+..|...-..+.++.+..|++.+|.++|-.+. ...+ .|..+| ..|.++|.+.|.++-|++++-++....
T Consensus 389 --------F~NdD~Fn~N~AQAk~atgny~eaEelf~~is-~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~ 458 (557)
T KOG3785|consen 389 --------FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-GPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS 458 (557)
T ss_pred --------hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-Chhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch
Confidence 22233334457788889999999999998765 2222 244454 456788899999999999998886444
Q ss_pred CHHH-HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCc
Q 005642 504 DVGM-WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576 (686)
Q Consensus 504 ~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 576 (686)
+..+ ...+...|.+.+.+=-|.+.|..+..++|. +..|. |+-.....+++.+....-.+.|..
T Consensus 459 e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnWe---------GKRGACaG~f~~l~~~~~~~~p~~ 522 (557)
T KOG3785|consen 459 ERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENWE---------GKRGACAGLFRQLANHKTDPIPIS 522 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-ccccC---------CccchHHHHHHHHHcCCCCCCchh
Confidence 4444 444556688999998888899888888884 33342 344445556666655444444543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.6e-10 Score=101.61 Aligned_cols=367 Identities=10% Similarity=0.048 Sum_probs=198.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHH-HHHHHHH
Q 005642 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA-SALLDTY 282 (686)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l~~~~ 282 (686)
+++.+..+.+..++++|++++..-.++ .| +....+.+..+|.+..++..|...++++... .|...-| -.-...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 455556666677777777777766554 23 4445555666666777777777777777664 3333322 2334556
Q ss_pred HhcCChhHHHHHHHhcccC-Cchh--HHHHHHHHHhCCCHHHHHHHHhhCCC-CCchhHHHHHHHHHhCCChhhHHHHHH
Q 005642 283 SKRGMPSDACKLFSELKVY-DTIL--LNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFC 358 (686)
Q Consensus 283 ~~~g~~~~A~~~~~~~~~~-~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (686)
.+.+.+.+|.++...|... +... ...-.......+++..+..++++.+. .+..+.+...+...+.|++++|++-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 6677777777777766643 1111 11112233456777777777777773 455666666666777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchh---------------------HHHHHHHHHH--
Q 005642 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI---------------------ISTSLVDFYC-- 415 (686)
Q Consensus 359 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~li~~~~-- 415 (686)
...+.+--.....|+..+ +..+.|+.+.|.+...+++++|++..+. .-+.++.++.
T Consensus 169 aAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 776655444455666555 4456677777777777777766532111 1122333322
Q ss_pred -----hchh--HHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhc
Q 005642 416 -----KCGY--DALALFNEMRNT-GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARA 486 (686)
Q Consensus 416 -----~~~~--~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 486 (686)
+.++ .|.+-+.+|.-+ .-..|++|...+.-.-. .+++.+..+-+.-+. ++.| ..+||..++-.|++.
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL---~~nPfP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLL---QQNPFPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHH---hcCCCChHHHHHHHHHHhhh
Confidence 1111 333333333211 12234455444422111 122333333333333 2334 445555555555555
Q ss_pred CChHHHHHHHHhCCC---C-CCHHHHH----------------------------------HHHHHHHhcCC---hhHHH
Q 005642 487 GCLNEAVNLIEQMPF---E-ADVGMWS----------------------------------SILRGCVAHGD---KGLGR 525 (686)
Q Consensus 487 g~~~~A~~~~~~~~~---~-p~~~~~~----------------------------------~li~~~~~~g~---~~~A~ 525 (686)
.-++-|-+++.+-.. + .+...|+ .-+..-+..++ ...|+
T Consensus 324 eyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 555555555443310 0 0011111 11111111222 12233
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCccceeeccccc
Q 005642 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNC 586 (686)
Q Consensus 526 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (686)
+-+++.+++. -++.+..+++|++..++..+++.|+...+. +.....|....++..
T Consensus 404 ~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef---C~ehd~WkLNvaHvl 458 (459)
T KOG4340|consen 404 NEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF---CNDHDVWKLNVAHVL 458 (459)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh---hcccceeeecccccc
Confidence 4444444432 246888999999999999999999988876 556667887776543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=129.03 Aligned_cols=249 Identities=18% Similarity=0.194 Sum_probs=104.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcc-CC---C-ChhhHHHHHHHHHccCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcC
Q 005642 145 SLVNLYGKCGDFNSANQVLNMM-KE---P-DDFCLSALISGYANCGKMNDARRVFDRTTDT---SSVMWNSMISGYISNN 216 (686)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~-~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 216 (686)
.+...+.+.|++++|++++++. .. | |...|..+.......++++.|...++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 5577788889999999999543 22 2 3444555666677788999999999888764 34466667766 6889
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC-CCchHHHHHHHHHHHHhcCChhHHHHHH
Q 005642 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACKLF 295 (686)
Q Consensus 217 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 295 (686)
++++|.+++.+..+. .++...+...+..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999988877654 3566677778888888999999999998877543 3567778888889999999999999999
Q ss_pred Hhcc--cC-CchhHHHHHHHHHhCCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH
Q 005642 296 SELK--VY-DTILLNTMITVYSSCGRIEDAKHIFRTMP---NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369 (686)
Q Consensus 296 ~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 369 (686)
++.. .| |....+.++..+...|+.+++.+++.... ..|+..|..+..++...|++++|+..|++..+. .+.|.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~ 248 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDP 248 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-H
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc-ccccc
Confidence 8887 34 56778888889999999888776666554 356778889999999999999999999998875 34477
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 370 FSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 370 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
.+...+..++...|+.++|.++..++.+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 7788889999999999999998876543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-10 Score=117.37 Aligned_cols=287 Identities=13% Similarity=0.017 Sum_probs=161.9
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHhccCC--CChh--hHHHHHHHHH
Q 005642 108 MLISGFAKADLAALEYGKQIHSHILVNGLDFDS-VLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDF--CLSALISGYA 182 (686)
Q Consensus 108 ~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~--~~~~li~~~~ 182 (686)
.+.++......|+++.|.+......+.. |+. ..+-....++.+.|+.+.|.+.+++..+ |+.. ........+.
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 3444444444466677776666655542 332 2233344556666777777777776543 3332 2223456666
Q ss_pred ccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHH---HccCChhhH
Q 005642 183 NCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC---SSLGFLEHG 256 (686)
Q Consensus 183 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a 256 (686)
..|+++.|...++++.+ .+..++..+...+.+.|++++|.+++..+.+.++.+.......-..+. ...+..+.+
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777777777776554 245566777777777777777777777777765432222111111111 122222222
Q ss_pred HHHHHHHHHcCC---CchHHHHHHHHHHHHhcCChhHHHHHHHhccc--CCchh---HHHHHHHHHhCCCHHHHHHHHhh
Q 005642 257 KQVHGHACKVGV---IDDVIVASALLDTYSKRGMPSDACKLFSELKV--YDTIL---LNTMITVYSSCGRIEDAKHIFRT 328 (686)
Q Consensus 257 ~~~~~~~~~~g~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~A~~~~~~ 328 (686)
.+.+..+.+... +.+...+..++..+...|+.++|.+++++..+ ||... ...........++.+.+.+.+++
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 334444333321 12566667777777777777777777777663 33221 11222223334566666666665
Q ss_pred CCC--C-Cc--hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 005642 329 MPN--K-SL--ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396 (686)
Q Consensus 329 ~~~--~-~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 396 (686)
..+ | |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 543 2 33 34456667777777777777777743333346777777777777777777777777777543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-09 Score=104.57 Aligned_cols=428 Identities=11% Similarity=0.071 Sum_probs=226.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHH--HHHHHH--ccCCHHHHHHHH
Q 005642 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA--LISGYA--NCGKMNDARRVF 194 (686)
Q Consensus 119 ~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--li~~~~--~~g~~~~A~~~~ 194 (686)
+++++|.+....++..+ +.|...+..=+.+..+.+.+++|+.+.+.-.... +++. +=.+|| +.+..|+|...+
T Consensus 26 ~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHHHHHHHH
Confidence 67777777777777765 4456666666667777788888886665543211 1121 234443 677778887777
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCc--h
Q 005642 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVID--D 271 (686)
Q Consensus 195 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~ 271 (686)
+-..+.+..+-..-...+-+.|++++|+.+|+.+.+.+.+- +...-..++.+-... .+ + .+......| +
T Consensus 103 ~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~-~---~~q~v~~v~e~s 174 (652)
T KOG2376|consen 103 KGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV-Q---LLQSVPEVPEDS 174 (652)
T ss_pred hcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH-H---HHHhccCCCcch
Confidence 74444444455555666677778888888888776654322 111222222221110 01 0 111111112 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHhcc--------cCC-----ch-----hHHHHHHHHHhCCCHHHHHHHHhhCCCC-
Q 005642 272 VIVASALLDTYSKRGMPSDACKLFSELK--------VYD-----TI-----LLNTMITVYSSCGRIEDAKHIFRTMPNK- 332 (686)
Q Consensus 272 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-----~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~- 332 (686)
-..+-.....+...|++.+|++++.... ..| .. .-..|..++...|+.++|.+++......
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 2222334556667777777777777662 111 11 1223444566667777777766665542
Q ss_pred --Cc----hhHHHHHHHHHhCCChh-hHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHccCChHHHHHHHHHH
Q 005642 333 --SL----ISWNSMIVGLSQNGSPI-EALDLFCNMNKLDLRM----------DKFSLASVISACANISSLELGEQVFARV 395 (686)
Q Consensus 333 --~~----~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p----------~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 395 (686)
|. +.-|.++..-....-++ .++..++........- .....|..+-. ...+..+.+.++-.
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~-l~tnk~~q~r~~~a-- 331 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA-LFTNKMDQVRELSA-- 331 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHH--
Confidence 22 12233332222222222 1222222221110000 00001100000 01111122221111
Q ss_pred HHhCCCcchhHHHHHHHHHHhchh----HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH--------HH
Q 005642 396 TIIGLDSDQIISTSLVDFYCKCGY----DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD--------AM 463 (686)
Q Consensus 396 ~~~~~~~~~~~~~~li~~~~~~~~----~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~--------~~ 463 (686)
..-.......+..++....++.. .+.+++....+....-........+......|+++.|.+++. .+
T Consensus 332 -~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~ 410 (652)
T KOG2376|consen 332 -SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSI 410 (652)
T ss_pred -hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh
Confidence 11111112233334333333322 566666665544333234566667777888999999999998 43
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 005642 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-----FEADVG----MWSSILRGCVAHGDKGLGRKVAERMIEL 534 (686)
Q Consensus 464 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~ 534 (686)
. .+.-.+.+...++..+.+.++.+.|..++.+.. ..+... ++.-++..-.++|+-++|..+++++++.
T Consensus 411 ~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 411 L---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred h---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 3 222345566778888898888777777776651 122222 2333344445779999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCCcchHHHHHHHH
Q 005642 535 DPENACAYIQLSSIFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 535 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (686)
+|++......+..+|+.. +.+.|..+-+.+
T Consensus 488 n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 488 NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999998766 477777765543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-07 Score=94.62 Aligned_cols=493 Identities=13% Similarity=0.164 Sum_probs=270.0
Q ss_pred HHHHHHhccCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCcchHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 005642 58 TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISGFAKADLAALEYGKQIHSHIL 132 (686)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~ 132 (686)
+.+.....+|++ .|-.-+..+..+|++..-...|++... .....|...++...+. +-++.+..+++.-+
T Consensus 92 er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~--~lPets~rvyrRYL 165 (835)
T KOG2047|consen 92 ERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH--GLPETSIRVYRRYL 165 (835)
T ss_pred HHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC--CChHHHHHHHHHHH
Confidence 334444444432 344444444555555555555554432 1233455555444444 33445555555554
Q ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC----------CChhhHHHHHHHHHccCC---HHHHHHHHhhcCC
Q 005642 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----------PDDFCLSALISGYANCGK---MNDARRVFDRTTD 199 (686)
Q Consensus 133 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~ 199 (686)
+. ++..-+..+..+++.+++++|-+.+..... .+...|.-+....++.-+ --....+++.+..
T Consensus 166 k~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~ 241 (835)
T KOG2047|consen 166 KV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR 241 (835)
T ss_pred hc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc
Confidence 43 222244455555566666666665555542 122233333333332211 1222333444433
Q ss_pred C--C--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcc----------------C------Ch
Q 005642 200 T--S--SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL----------------G------FL 253 (686)
Q Consensus 200 ~--~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~------~~ 253 (686)
+ | -..|++|..-|.+.|.+++|.++|++.+..- ....-|..+.++|+.- + ++
T Consensus 242 rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl 319 (835)
T KOG2047|consen 242 RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL 319 (835)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH
Confidence 2 2 2346666666666666666666666655431 1222233333332211 1 11
Q ss_pred hhHHHHHHHHHHcC-----------CCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cC------CchhHHHHHHHH
Q 005642 254 EHGKQVHGHACKVG-----------VIDDVIVASALLDTYSKRGMPSDACKLFSELK---VY------DTILLNTMITVY 313 (686)
Q Consensus 254 ~~a~~~~~~~~~~g-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~------~~~~~~~li~~~ 313 (686)
+-...-++.+.... -+.++..|..-+.. ..|+..+-...|.+.. .| -...|..+.+.|
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLY 397 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHH
Confidence 22222233333221 12233444333332 2455666666666654 11 123688888999
Q ss_pred HhCCCHHHHHHHHhhCCCCCc-------hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-----------------CH
Q 005642 314 SSCGRIEDAKHIFRTMPNKSL-------ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-----------------DK 369 (686)
Q Consensus 314 ~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------------~~ 369 (686)
-..|+++.|..+|++..+-+- .+|......=.++.+++.|+++.+......-.| +.
T Consensus 398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH
Confidence 999999999999998876322 356666666677888888988887765431111 12
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh---HHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 005642 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---DALALFNEMRNTGVKPTI-ITFTAILS 445 (686)
Q Consensus 370 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~A~~~~~~m~~~~~~p~~-~~~~~ll~ 445 (686)
..|...++.-...|-++....+|+.+++..+.....+-|-- ++..... ++.+.+++-...=..|+. ..|+..+.
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA--mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA--MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 23445555556678888888999998887765333322211 1111111 666666653332223444 45666665
Q ss_pred HHhc---cCCHHHHHHHHHHHHHhcCCCCC-h-hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC--HHHHHHHHHHHH
Q 005642 446 ACDH---CGLVKEGQKWFDAMKWQYHIDPE-I-EHYSCMVDLFARAGCLNEAVNLIEQMP--FEAD--VGMWSSILRGCV 516 (686)
Q Consensus 446 ~~~~---~g~~~~A~~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~li~~~~ 516 (686)
-+.+ .-..+.|..+|++..+ +.+|. . ..|......=.+.|....|+.++++.. .++. ...|+..|.-..
T Consensus 556 kfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaa 633 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAA 633 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 5443 3478999999999983 66663 2 233334444456789999999999983 4432 455777776555
Q ss_pred hcCChhHHHHHHHHHHccCCCCch--hHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 517 AHGDKGLGRKVAERMIELDPENAC--AYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..=-+.....+|+++++.-|+... .....+..-++.|..+.|+.++..-.+.
T Consensus 634 e~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 634 EIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 443466678899999998886432 3445567778899999999998865543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-09 Score=104.98 Aligned_cols=212 Identities=11% Similarity=0.037 Sum_probs=152.7
Q ss_pred HccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 005642 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457 (686)
Q Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 457 (686)
.-.|+.-.+..-|+.+++....++. .|--+..+|....+ +....|.+..+-+.. |+.+|..-.+...-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 4458888899999998887655443 14444444554444 888888888876544 5566776667777788999999
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 005642 458 KWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534 (686)
Q Consensus 458 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 534 (686)
.=|++.+ .+.| +...|-.+.-+..|.+.++++...|++.. ++.-+..|+.....+..+++++.|.+.|+.++++
T Consensus 415 aDF~Kai---~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 415 ADFQKAI---SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHh---hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999987 5777 57788888888889999999999999983 5445788888999999999999999999999999
Q ss_pred CCC------CchhHHHHHHHHhh-cCCcchHHHHHHHHHhcCCCCCCCccceeeccccceeehhhhhhhhcHH
Q 005642 535 DPE------NACAYIQLSSIFAT-SGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDTMFLQLANFD 600 (686)
Q Consensus 535 ~p~------~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (686)
.|. ++.++..-+-+..+ .+++..|..++++..+ .+|.+-..+.-.+.+-.+.+...++...+
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e----~Dpkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE----LDPKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc----cCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 998 55555544433322 3788888888886655 56665544444444444444444444433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.2e-09 Score=98.97 Aligned_cols=283 Identities=15% Similarity=0.096 Sum_probs=160.5
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHH
Q 005642 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294 (686)
Q Consensus 215 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 294 (686)
.|+|..|.++..+-.+.+-. ....|..-..+.-..|+.+.+-.++.++.+....++..+.-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57777777777776554322 23344455556667777777777777777754455666666666777777777777665
Q ss_pred HHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH-----
Q 005642 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK----- 369 (686)
Q Consensus 295 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----- 369 (686)
++++. +|...++........+|.+.|++.....++.+|.+.|.--++
T Consensus 176 v~~ll----------------------------~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l 227 (400)
T COG3071 176 VDQLL----------------------------EMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL 227 (400)
T ss_pred HHHHH----------------------------HhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH
Confidence 55432 333345556666666677777777777777777666644433
Q ss_pred --HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 370 --FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSAC 447 (686)
Q Consensus 370 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 447 (686)
.++..++.-+...+..+.-...|+..-+ ..+-++..-.+++.-+
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr----------------------------------~lr~~p~l~~~~a~~l 273 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPR----------------------------------KLRNDPELVVAYAERL 273 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccH----------------------------------HhhcChhHHHHHHHHH
Confidence 2344444444444444333333333211 1122444455555566
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHH
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-P-FEADVGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~ 525 (686)
.+.|+.++|.++..+..+ .+.+|+. +..-...+-++.+.-++..++. + .+.++..+.+|...|.+++.+.+|.
T Consensus 274 i~l~~~~~A~~~i~~~Lk-~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 274 IRLGDHDEAQEIIEDALK-RQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred HHcCChHHHHHHHHHHHH-hccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHH
Confidence 666666666666666652 3444441 1111223444444444444333 1 1123355666666667777777777
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 526 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
..++.+++..|+ ...|..++.++.+.|+.++|.+.+++..
T Consensus 349 ~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 349 EALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 777766666663 3446667777777777777776666555
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.4e-09 Score=102.92 Aligned_cols=477 Identities=12% Similarity=0.040 Sum_probs=268.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHhccCC--CCChhhHHHHHHHHHhcCCHHHHHHHHhhC--CCCCcchHHHHHHHHHhcCh
Q 005642 43 IANRLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM--PQKNDFSWNMLISGFAKADL 118 (686)
Q Consensus 43 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~~~ 118 (686)
-+..++.-+..+.++.-|.-+-+++. ..|+.--.-+..++.-.|.++.|..+...- .+.|..+.......+.+.
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l-- 95 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL-- 95 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH--
Confidence 34455555556666777776666654 233333345566666777777776666543 223433333333333333
Q ss_pred hhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C---ChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 005642 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC-G---DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194 (686)
Q Consensus 119 ~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~-g---~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 194 (686)
.+.+.+..++... .+..++..| |.+. + ..+.+.+.. +.......+-.-...|....+.++|...|
T Consensus 96 k~~~~al~vl~~~---~~~~~~f~y------y~~~~~~~l~~n~~~~~~--~~~~essic~lRgk~y~al~n~~~ar~~Y 164 (611)
T KOG1173|consen 96 KEWDQALLVLGRG---HVETNPFSY------YEKDAANTLELNSAGEDL--MINLESSICYLRGKVYVALDNREEARDKY 164 (611)
T ss_pred HHHHHHHHHhccc---chhhcchhh------cchhhhceeccCcccccc--cccchhceeeeeeehhhhhccHHHHHHHH
Confidence 4444444444321 001111111 1111 0 011111000 00000111111223466677888888888
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCc
Q 005642 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG----VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 270 (686)
Q Consensus 195 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 270 (686)
.+....|+..+.++...-.. ..-.+.+.+..+...+ ...+......+.........-+.....-++..-.+...
T Consensus 165 ~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~ 242 (611)
T KOG1173|consen 165 KEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAE 242 (611)
T ss_pred HHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhh
Confidence 88777776665554432211 1112222233332211 11222233223222210000000000001011112344
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHhcccCC---chhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHH
Q 005642 271 DVIVASALLDTYSKRGMPSDACKLFSELKVYD---TILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGL 344 (686)
Q Consensus 271 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 344 (686)
+........+-+...+++.+..++++.+.+.| ...+..-|.++...|+..+-..+=.++.+ ..+.+|-++..-|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 55666666777777788888888887766433 33444445566666665544444444443 2446777777777
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHH
Q 005642 345 SQNGSPIEALDLFCNMNKLDLRMD-KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA 423 (686)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~ 423 (686)
...|+..+|.+.|.+.... .|. ...|.....+++-.|.-++|...+..+-+.
T Consensus 323 l~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl------------------------- 375 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL------------------------- 375 (611)
T ss_pred HHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-------------------------
Confidence 7777777777777776542 222 234556666666666666666666544331
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 005642 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-- 500 (686)
Q Consensus 424 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 500 (686)
|. |.. -+..| +.--|.+.++.+.|.+.|.+.. ++.| |+..++-++-.....+.+.+|...|+...
T Consensus 376 -~~-----G~h-lP~LY--lgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 376 -MP-----GCH-LPSLY--LGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEV 443 (611)
T ss_pred -cc-----CCc-chHHH--HHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHH
Confidence 11 111 12223 3336788899999999999877 6777 67888888888888899999999998762
Q ss_pred ------CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCC
Q 005642 501 ------FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573 (686)
Q Consensus 501 ------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 573 (686)
..+ -.++++.|..+|++.+.+++|+..+++++.+.|.++.++..++-+|...|+++.|.+.+.+..- ..
T Consensus 444 ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~----l~ 519 (611)
T KOG1173|consen 444 IKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA----LK 519 (611)
T ss_pred hhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh----cC
Confidence 111 3466888999999999999999999999999999999999999999999999999999886654 44
Q ss_pred CCcc
Q 005642 574 PGCS 577 (686)
Q Consensus 574 ~~~~ 577 (686)
|.+.
T Consensus 520 p~n~ 523 (611)
T KOG1173|consen 520 PDNI 523 (611)
T ss_pred CccH
Confidence 5554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-09 Score=99.35 Aligned_cols=209 Identities=13% Similarity=0.083 Sum_probs=125.4
Q ss_pred CChHHHHHHHhccCCCChhhHH---HHHHHHHccCCHHHHHHHHhhcCC-CC------hhhHHHHHHHHHhcCChhHHHH
Q 005642 154 GDFNSANQVLNMMKEPDDFCLS---ALISGYANCGKMNDARRVFDRTTD-TS------SVMWNSMISGYISNNEDTEALL 223 (686)
Q Consensus 154 g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~li~~~~~~g~~~~A~~ 223 (686)
++.++|.+.|-+|.+.|..|+. ++.+.|-+.|.+|.|+++...+.+ || ..+...|..-|...|-++.|..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 5667777777777665444443 455666677777777777665543 33 1234456666777777777777
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchH----HHHHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV----IVASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 224 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
+|..+.+.| .--..+.-.|+..|-...++++|.++-+++.+.+..+.. ..|..|...+....+++.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 777776543 223445566777777777777777777777776544332 245556666666667777777776655
Q ss_pred cC---CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc----hhHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 005642 300 VY---DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKL 363 (686)
Q Consensus 300 ~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 363 (686)
+. .+.+--.+.+.....|+++.|.+.++.+.+.|+ .+...+..+|.+.|+.++....+..+.+.
T Consensus 208 qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 208 QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 22 233344455555556666666666655555444 23444555666666666666666665554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.2e-09 Score=109.67 Aligned_cols=248 Identities=11% Similarity=0.100 Sum_probs=156.0
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC----CChhhHHHHHHHHHccCCHHHHHHHHhhcCCCC
Q 005642 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201 (686)
Q Consensus 126 ~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 201 (686)
.++..+...|+.|+..+|.++|.-||..|+.+.|- +|.-|.- .+...++.++.+..+.++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35667788899999999999999999999999998 8877763 34457888888888888887776 677
Q ss_pred hhhHHHHHHHHHhcCChhH---HHHHHHHHH----HCCCCcCHHHHHHHHHHHHccC-Ch------hhHHHHHHHHHHcC
Q 005642 202 SVMWNSMISGYISNNEDTE---ALLLFHKMR----RNGVLEDASTLASVLSACSSLG-FL------EHGKQVHGHACKVG 267 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~---A~~~~~~m~----~~g~~p~~~~~~~ll~~~~~~~-~~------~~a~~~~~~~~~~g 267 (686)
+.+|..|..+|.++|+... +.+.+.... ..|+.....-+-..+++|-+.- +. .--+.++...++.+
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998754 222122221 1233222222222222221110 00 01112222333322
Q ss_pred --CCchHHHHHH--HHHHHH-hcCChhHHHHHHHhcc-cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC----chhH
Q 005642 268 --VIDDVIVASA--LLDTYS-KRGMPSDACKLFSELK-VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS----LISW 337 (686)
Q Consensus 268 --~~~~~~~~~~--l~~~~~-~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~ 337 (686)
.|........ .++-.. ....+++-........ .+++.++..++.+-...|+++.|..++.+|.+.+ ..-|
T Consensus 163 ~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 1111110000 111111 1222333333333333 4788899999999999999999999999998753 3344
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 005642 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 384 (686)
Q Consensus 338 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 384 (686)
-.++.+ .++...+..+++-|.+.|+.|+..|+...+..+...|.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 455544 77788888888999999999999999877777766443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-08 Score=105.42 Aligned_cols=420 Identities=15% Similarity=0.073 Sum_probs=222.9
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCC----C-ChhhHHH
Q 005642 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD----T-SSVMWNS 207 (686)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~ 207 (686)
+..|..+|-.|.-+..++|+++.+-+.|++... .....|..+...|...|.--.|..+++.-.. | ++..+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 455666666666666666666666666666553 3344566666666666666666666654332 1 1222222
Q ss_pred HHHHHHh-cCChhHHHHHHHHHHHC--CC--CcCHHHHHHHHHHHHcc----C-------ChhhHHHHHHHHHHcCCCch
Q 005642 208 MISGYIS-NNEDTEALLLFHKMRRN--GV--LEDASTLASVLSACSSL----G-------FLEHGKQVHGHACKVGVIDD 271 (686)
Q Consensus 208 li~~~~~-~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~g~~~~ 271 (686)
.-..|.+ -+.+++++++-.+.... +. ......|..+.-+|... . ...++.+.+++.++.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 2222322 24455555555555441 10 11122222222222111 0 123444555555554421 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHhcc----cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHH---HHHHHH
Q 005642 272 VIVASALLDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN---SMIVGL 344 (686)
Q Consensus 272 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~ 344 (686)
+.+...+.--|...++++.|.+...+.. ..+...|..|.-.+...+++.+|+.+.+...+.-..-++ .-+..-
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 2333334444555566666666555544 224555666666666666666666655544331111111 111122
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhchhHHH
Q 005642 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI--IGLDSDQIISTSLVDFYCKCGYDAL 422 (686)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~A~ 422 (686)
..-++.++++.....+... .+ +...+ ...++-....+....+.- ........++..+.......+..+.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~-we-~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLAL-WE-AEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hhcccHHHHHHHHHHHHHH-HH-hhhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 2234444444443333221 00 00000 000000000111110000 0001111122222211111111000
Q ss_pred HHHHHHHHCCCC--CC------HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHH
Q 005642 423 ALFNEMRNTGVK--PT------IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAV 493 (686)
Q Consensus 423 ~~~~~m~~~~~~--p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 493 (686)
.-. .+...... |+ ...|......+.+.+..++|...+.+.. ++.| ....|...+..+...|..++|.
T Consensus 629 se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 629 SEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred ccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 000 01111111 22 1245556667888999999998888876 4556 6788888889999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHH--HHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 494 NLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLGRK--VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 494 ~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
+.|... .+.|+ +.+..++...+.+.|+...|.. ++..+++.+|.+..+|..++.++.+.|+.++|.+.|....+..
T Consensus 705 ~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 705 EAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 999877 47775 6778899999999999888887 9999999999999999999999999999999999999887643
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-09 Score=109.96 Aligned_cols=129 Identities=12% Similarity=0.212 Sum_probs=103.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcC--CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCC
Q 005642 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYH--IDPE----IEHYSCMVDLFARAGCLNEAVNLIEQMP---------FEA 503 (686)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p 503 (686)
.++.+...|...+++++|..+++...+... ..++ ..++..|...|.+.|++++|.++++++- ..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 466677789999999999999998765433 2222 4689999999999999999999999871 122
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHc----cCC---CCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 504 D-VGMWSSILRGCVAHGDKGLGRKVAERMIE----LDP---ENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 504 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
. ...++.+...|.+.+++++|.++|.+... ..| +...+|..|+.+|...|++++|.++...+..
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 45578888999999999999999988776 344 4456789999999999999999999887763
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-08 Score=94.35 Aligned_cols=294 Identities=12% Similarity=0.083 Sum_probs=178.4
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCch---HHHHHHHHHHHHhcCChhHH
Q 005642 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD---VIVASALLDTYSKRGMPSDA 291 (686)
Q Consensus 215 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~A 291 (686)
+++.++|+++|-+|.+.. +-+..+-.+|.+.|.+.|..+.|..++..+.+..--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888888888887731 23344556677777788888888888887776521111 11233445555555555555
Q ss_pred HHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC---chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 005642 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 368 (686)
+.+|. .+.+.+ ......++..|-...+|++|++.-+++.+.+-++.
T Consensus 127 E~~f~-------------------------------~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 127 EDIFN-------------------------------QLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred HHHHH-------------------------------HHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 55555 444422 23455667777777777777777777766554433
Q ss_pred HH----HHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005642 369 KF----SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAIL 444 (686)
Q Consensus 369 ~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 444 (686)
.. -|.-+........+++.|...+.+..+.+ .+ ....-..+.
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~---------------------------------~~-cvRAsi~lG 221 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQAD---------------------------------KK-CVRASIILG 221 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC---------------------------------cc-ceehhhhhh
Confidence 22 12233333333445555555554444322 11 223333455
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhH
Q 005642 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGMWSSILRGCVAHGDKGL 523 (686)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~ 523 (686)
......|+++.|.+.++...+ .+..--+.+...|..+|...|+.++...++.++ ...+....-..+...-....-.+.
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~ 300 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDA 300 (389)
T ss_pred HHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHH
Confidence 667788899999999888873 232224677888888999999999988888876 344454444444444444444677
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHH-h--hcCCcchHHHHHHHHHhcCCCCCCCc
Q 005642 524 GRKVAERMIELDPENACAYIQLSSIF-A--TSGEWEKSSLIRDIMREKHVGKLPGC 576 (686)
Q Consensus 524 A~~~~~~~~~~~p~~~~~~~~l~~~~-~--~~g~~~~a~~~~~~~~~~~~~~~~~~ 576 (686)
|...+.+-+..+|+- ..+..++... . ..|++.+-...++.|....++..|..
T Consensus 301 Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 301 AQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred HHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 777777777778854 3344444433 2 34567777778888887767666654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-09 Score=102.90 Aligned_cols=199 Identities=11% Similarity=0.017 Sum_probs=152.5
Q ss_pred chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 005642 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413 (686)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 413 (686)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 95 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------------- 95 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 3456677778888888888888888877642 3345566677777778888888888877766543
Q ss_pred HHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005642 414 YCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493 (686)
Q Consensus 414 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 493 (686)
+.+...+..+...+...|++++|.+.+++.............+..+...+...|++++|.
T Consensus 96 --------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 96 --------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred --------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 124456666777788889999999999998742222224567777888899999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 494 NLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 494 ~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
..+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++...|++++|..+.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 156 KYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999887 3344 4667888888899999999999999999988888878888888999999999999998887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.1e-08 Score=93.28 Aligned_cols=94 Identities=6% Similarity=-0.037 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 005642 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284 (686)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 284 (686)
|..-+.+--+.|+.+.+-.++.+.-+.--.++...+.+..+.....|+.+.|..-..++.+.+ +-++.+.....++|.+
T Consensus 121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~ 199 (400)
T COG3071 121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIR 199 (400)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence 333344444555666666666655543223333344444445555566666666666655554 2244455555566666
Q ss_pred cCChhHHHHHHHhcc
Q 005642 285 RGMPSDACKLFSELK 299 (686)
Q Consensus 285 ~g~~~~A~~~~~~~~ 299 (686)
.|++.....++..+.
T Consensus 200 ~g~~~~ll~~l~~L~ 214 (400)
T COG3071 200 LGAWQALLAILPKLR 214 (400)
T ss_pred hccHHHHHHHHHHHH
Confidence 666666665555444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.1e-10 Score=101.91 Aligned_cols=225 Identities=11% Similarity=0.042 Sum_probs=171.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhCCC--CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccC
Q 005642 307 NTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA-SVISACANIS 383 (686)
Q Consensus 307 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~ 383 (686)
+.+.++|.+.|-+.+|.+.|+...+ |-+.||..+-..|.+..++..|+.+|.+-.+. .|-.+||. ...+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 3556666666666666666666544 56678888888888888888888888877764 56556554 4555556666
Q ss_pred ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 005642 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463 (686)
Q Consensus 384 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 463 (686)
+.++|.++|+...+.. +.+......+...|.-.++++.|+.+++++
T Consensus 305 ~~~~a~~lYk~vlk~~----------------------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH----------------------------------PINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred hHHHHHHHHHHHHhcC----------------------------------CccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 6777666666665532 224455555666777788899999999988
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEAD--VGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 464 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
. +.|+ .+++.|..+.-+|.-.++++-++.-|++.. ..|+ ...|-.+.......||+..|.+.|+-++..+|++
T Consensus 351 L-qmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 351 L-QMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred H-HhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 8 4564 477888888888888888998888888762 3344 5678889999999999999999999999999999
Q ss_pred chhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 539 ACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 539 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
..++++|+-.-.+.|+.++|+.++.......
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999999999877643
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.6e-07 Score=91.32 Aligned_cols=220 Identities=10% Similarity=0.047 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHH
Q 005642 106 WNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYA 182 (686)
Q Consensus 106 ~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 182 (686)
|...++.|-. +.++.+.+..+.+++ +.+-...+.....-.+...|+-++|......... .+.+.|..+.-.+-
T Consensus 11 F~~~lk~yE~---kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 11 FRRALKCYET---KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHH---HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 3444444432 345555555555555 2333334444444444455666666666555543 22344555555555
Q ss_pred ccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHccCChhhHHH
Q 005642 183 NCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-ASTLASVLSACSSLGFLEHGKQ 258 (686)
Q Consensus 183 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~ 258 (686)
...++++|+..|..... .|...|.-+...-++.++++.....-....+. .|. ...|..+..+.--.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554332 23444554444445555555555555444442 222 2234444444444555555555
Q ss_pred HHHHHHHcC-CCchHHHHHHH------HHHHHhcCChhHHHHHHHhcccC--Cch-hHHHHHHHHHhCCCHHHHHHHHhh
Q 005642 259 VHGHACKVG-VIDDVIVASAL------LDTYSKRGMPSDACKLFSELKVY--DTI-LLNTMITVYSSCGRIEDAKHIFRT 328 (686)
Q Consensus 259 ~~~~~~~~g-~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~ 328 (686)
+.+...+.. -.|+...+... .....+.|.++.|.+.+....+. |-. .-..-...+.+.+++++|..++..
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 555554443 12333322111 12223344444454444433311 111 112333444555555555555555
Q ss_pred CCC
Q 005642 329 MPN 331 (686)
Q Consensus 329 ~~~ 331 (686)
+..
T Consensus 245 Ll~ 247 (700)
T KOG1156|consen 245 LLE 247 (700)
T ss_pred HHh
Confidence 544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.1e-07 Score=91.06 Aligned_cols=451 Identities=13% Similarity=0.103 Sum_probs=252.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 005642 74 SWNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151 (686)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~ 151 (686)
.|..++..| ..+++...+...+.+.. |... =+..+.++.-...++.+.|......-++..+ -+.+.|+.+.-.+.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHg-eslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPEHG-ESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccc-hhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHh
Confidence 344555544 44556666665555543 2111 1112233222223566777766666555432 25566777777777
Q ss_pred hcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHH
Q 005642 152 KCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLF 225 (686)
Q Consensus 152 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 225 (686)
...++++|++.|..... .|...|..+.-.-++.|+++.....-.+..+ ..-..|..++.++.-.|++..|..++
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888877663 3445566655556677777777666655544 33557888888888888888888888
Q ss_pred HHHHHCC-CCcCHHHHHHHHHH------HHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhc
Q 005642 226 HKMRRNG-VLEDASTLASVLSA------CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 226 ~~m~~~g-~~p~~~~~~~ll~~------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 298 (686)
++..+.. -.|+...+...... ....|.++.|.+.+..-... +......-..-.+.+.+.+++++|..++..+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 8877654 24565555443332 23556666666665543332 1212223345566777888888888888877
Q ss_pred ccC--Cchh-HHHHHHHHHhCCCHHHHH-HHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHH
Q 005642 299 KVY--DTIL-LNTMITVYSSCGRIEDAK-HIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371 (686)
Q Consensus 299 ~~~--~~~~-~~~li~~~~~~g~~~~A~-~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 371 (686)
..+ |... |-.+..++.+-.+.-++. .+|....+. ....-..=+.......-.+..-.++..+.+.|+++-...
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d 325 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD 325 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh
Confidence 743 3333 334444443222333333 444444331 111111111111112222333445555666665544333
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCC----------CCCCHH--H
Q 005642 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTG----------VKPTII--T 439 (686)
Q Consensus 372 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~----------~~p~~~--~ 439 (686)
+.++-. .....+ +.++++ ..+...+...| -+|... +
T Consensus 326 l~SLyk---~p~k~~----~le~Lv-------------------------t~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 326 LRSLYK---DPEKVA----FLEKLV-------------------------TSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred hHHHHh---chhHhH----HHHHHH-------------------------HHHHhhcccccCCCcccccccCCchHHHHH
Confidence 333221 111111 222111 11111111111 134443 4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCV 516 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~ 516 (686)
+--++..+-+.|+++.|..+++... +..|+ ++.|..-.+++.+.|++++|..++++.. -.||...-..-+.-..
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 4456677888999999999999887 55675 6778888899999999999999999884 3455544445556667
Q ss_pred hcCChhHHHHHHHHHHccCCC-------CchhHHHH--HHHHhhcCCcchHHHHHH
Q 005642 517 AHGDKGLGRKVAERMIELDPE-------NACAYIQL--SSIFATSGEWEKSSLIRD 563 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~p~-------~~~~~~~l--~~~~~~~g~~~~a~~~~~ 563 (686)
++++.++|.++.......+-+ -...|..+ +.+|.++|+|..|.+=+.
T Consensus 451 rAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred HccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 888999998887776653321 11234443 567888888877775433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.8e-11 Score=80.62 Aligned_cols=50 Identities=30% Similarity=0.519 Sum_probs=46.6
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 005642 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249 (686)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 249 (686)
||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999999999999999999999999999999864
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.5e-07 Score=85.41 Aligned_cols=395 Identities=12% Similarity=0.037 Sum_probs=226.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhccCCCCh-hhHHHHHHHHHc-cCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 005642 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD-FCLSALISGYAN-CGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216 (686)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 216 (686)
+...-...+.+|-..++-+.|...+.+.++.-. ...+.|+.-+-+ .++-.++.--+......-+..... |.+..+.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~-i~~ll~l~ 174 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV-IEALLELG 174 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH-HHHHHHHh
Confidence 444555667777777888888888877775322 223333333322 222222211111111111111111 11111110
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHH--ccCChhhHHHHHHHHHHcC-CCchHHHHHHHHHHHHhcCChhHHHH
Q 005642 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACS--SLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACK 293 (686)
Q Consensus 217 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~ 293 (686)
...+...=..|-...++|+..+...-+.+++ ..++-..+...+-.+.... ++.|+.....+..++...|+.++|..
T Consensus 175 -v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 175 -VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred -hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence 0111111112222224444444444444433 2344444444433333322 56677777888888888888888888
Q ss_pred HHHhcccCCchhHH---HHHHHHHhCCCHHHHHHHHhhCCCCC---chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC
Q 005642 294 LFSELKVYDTILLN---TMITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367 (686)
Q Consensus 294 ~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 367 (686)
.|++....|+.+.. .....+.+.|+.+.-..+...+-..+ ...|..-++.+....+++.|+.+-++.++.. +.
T Consensus 254 ~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r 332 (564)
T KOG1174|consen 254 IFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PR 332 (564)
T ss_pred HHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cc
Confidence 88877644443322 23344566777776666655554332 2344444555556677788887777776642 22
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHH-
Q 005642 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAIL- 444 (686)
Q Consensus 368 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll- 444 (686)
+...|..-...+...++.++|.-.|+.++... +.+...|..|+..|...|. +|..+-....+. ++.+..+...+.
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~ 410 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGT 410 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcc
Confidence 33445444556667788888887787766543 3567778888888877776 333333222111 112334443332
Q ss_pred HHHh-ccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCh
Q 005642 445 SACD-HCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGMWSSILRGCVAHGDK 521 (686)
Q Consensus 445 ~~~~-~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~ 521 (686)
..|. ...--++|.+++++.. .+.|+ ......+...+...|..++++.++++. ...||....+.|.+.++..+.+
T Consensus 411 ~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 411 LVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred eeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhH
Confidence 2222 2234578888888766 56675 667788888899999999999999887 5778888899999999999999
Q ss_pred hHHHHHHHHHHccCCCCchh
Q 005642 522 GLGRKVAERMIELDPENACA 541 (686)
Q Consensus 522 ~~A~~~~~~~~~~~p~~~~~ 541 (686)
++|...|..++.++|++..+
T Consensus 488 Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 488 QKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHHHhcCccchHH
Confidence 99999999999999977553
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-10 Score=80.07 Aligned_cols=50 Identities=26% Similarity=0.499 Sum_probs=43.6
Q ss_pred CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 005642 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381 (686)
Q Consensus 332 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 381 (686)
||+++||.+|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888889999999999999999999999988888888888888888864
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.6e-07 Score=89.04 Aligned_cols=440 Identities=10% Similarity=0.058 Sum_probs=208.8
Q ss_pred HHHhcCCcHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHHHHHH
Q 005642 50 MYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQ 126 (686)
Q Consensus 50 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~~ 126 (686)
.+...|++++|.+..+++.. .+..++..-+-++.+.+++++|+.+.+.-........-.+=++||.-..+..+++..
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk 100 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALK 100 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHH
Confidence 34455566666666555543 244455555555666666666664444332211111111344555443445555555
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHH-HHccCCHHHHHHHHhhcCCCChhh
Q 005642 127 IHSHILVNGLDFD-SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG-YANCGKMNDARRVFDRTTDTSSVM 204 (686)
Q Consensus 127 i~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~ 204 (686)
.+. |..++ ..+...-...+.+.|++++|..+++.+.+.+...+...+.+ +...+---.+. +.+..+.....+
T Consensus 101 ~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~s 174 (652)
T KOG2376|consen 101 TLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDS 174 (652)
T ss_pred HHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcch
Confidence 544 33222 22444445556666777777777776655444333333322 11111111111 233333221222
Q ss_pred H---HHHHHHHHhcCChhHHHHHHHHHHHC-------CCCcCH------H-HHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 005642 205 W---NSMISGYISNNEDTEALLLFHKMRRN-------GVLEDA------S-TLASVLSACSSLGFLEHGKQVHGHACKVG 267 (686)
Q Consensus 205 ~---~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~------~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 267 (686)
| ......++..|++.+|+++++...+. +-.-+. . .-..+.-.+-..|+.++|..++...++..
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 2 22344556677777777777766221 100000 0 11223333446677777777777777765
Q ss_pred CCchHH---HHHHHHHHHHhcCChh-HHHHHHHhcccCC-------------chhHHHHHHHHHhCCCHHHHHHHHhhCC
Q 005642 268 VIDDVI---VASALLDTYSKRGMPS-DACKLFSELKVYD-------------TILLNTMITVYSSCGRIEDAKHIFRTMP 330 (686)
Q Consensus 268 ~~~~~~---~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~~~ 330 (686)
....+. .-|.|+.+-....-++ .+...++...... ...+....-...-.+..+.+.++....+
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 332211 1233332221111111 1222222221110 0111111122223455566666666666
Q ss_pred CCCc-hhHHHHHHHHH--hCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH--------HHHHhC
Q 005642 331 NKSL-ISWNSMIVGLS--QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA--------RVTIIG 399 (686)
Q Consensus 331 ~~~~-~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~ 399 (686)
...+ ..+..++.... +...+.++.+++....+....-.....-..+......|+++.|.+++. .+.+.+
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~ 414 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK 414 (652)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc
Confidence 5432 33444443332 223466677776666554211123344455555677888888888888 444444
Q ss_pred CCcchhHHHHHHHHHHhchh--HHHHHHHHHHHC--CCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 005642 400 LDSDQIISTSLVDFYCKCGY--DALALFNEMRNT--GVKPTI----ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471 (686)
Q Consensus 400 ~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~--~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 471 (686)
..|. +-.+++..|.+.+. .|..++++.... .-.+.. .++.-+...-.+.|+.++|..+++++.+ -.++
T Consensus 415 ~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~ 490 (652)
T KOG2376|consen 415 HLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPN 490 (652)
T ss_pred cChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCc
Confidence 3333 34445555555554 333333332210 001111 2333333344566888888888888873 2345
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMP 500 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (686)
|.++...++.+|++. +++.|..+-+.+.
T Consensus 491 d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 778888888887765 5777777777664
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.5e-08 Score=99.36 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhc----C-CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQY----H-IDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP--------FEA 503 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p 503 (686)
-+++.|...|.+.|++++|.+++++++... + ..+ ....++.|...|.+.+.+++|.++|.+.. ..|
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 578899999999999999999999986432 1 223 35678889999999999999999988762 334
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 504 D-VGMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 504 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
+ ..+|..|...|.+.|+++.|+++.+....
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4 45699999999999999999999888775
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-06 Score=87.28 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=35.7
Q ss_pred ChhHHHHHHHHHHccCCCC------chhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 520 DKGLGRKVAERMIELDPEN------ACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
|..+.+.-.+.+++ +|.. ...|..++..+....+|..|-+.+++|..+-
T Consensus 1306 D~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 45555555666665 3432 2457788899999999999999999998753
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-08 Score=96.15 Aligned_cols=192 Identities=13% Similarity=0.042 Sum_probs=113.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 282 (686)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 345555566666666666666666665532 2234455555556666666666666666666553 22344555556666
Q ss_pred HhcCChhHHHHHHHhcccC-----CchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHH
Q 005642 283 SKRGMPSDACKLFSELKVY-----DTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEAL 354 (686)
Q Consensus 283 ~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 354 (686)
...|++++|...|++.... ....+..+..++...|++++|...+++... .+...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666655421 123444455555566666666666655543 23456666777777777888887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 355 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
..+++..+. .+.+...+..+...+...|+.+.|..+.+.+.+
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777665 334455555666666677777777776665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-06 Score=81.69 Aligned_cols=439 Identities=13% Similarity=0.082 Sum_probs=257.5
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 005642 79 IEGFMKLGHKEKSLQLFNVMPQK---NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 155 (686)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 155 (686)
+.-+....++..|+.+++--... ........|..|.- ..+++++|..++..+... -.++...+-.|...+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-HLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-hhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHH
Confidence 44456677888888887765431 12234444444433 358899999998887774 36666777777777777899
Q ss_pred hHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 005642 156 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235 (686)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 235 (686)
+.+|..+-.+.++. ...-..+...-.+.++-++-..+-+.+.... .---+|.+..-..-.+.+|+++|.+.+.. .|
T Consensus 107 Y~eA~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ 182 (557)
T KOG3785|consen 107 YIEAKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD--NP 182 (557)
T ss_pred HHHHHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Ch
Confidence 99999888776542 2333445555566777666665555544322 22334444444455788999999998774 46
Q ss_pred CHHHHHHHHHH-HHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc--CChhHHHHHHHhcccCCchhHHHHHHH
Q 005642 236 DASTLASVLSA-CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR--GMPSDACKLFSELKVYDTILLNTMITV 312 (686)
Q Consensus 236 ~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~li~~ 312 (686)
+-...+.-+.. |.+..-++.+.+++.--++. ++.++...|.......+. |+.. ..-..++...-... --.+.-
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~a--e~E~k~ladN~~~~-~~f~~~ 258 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTA--EDEKKELADNIDQE-YPFIEY 258 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchh--HHHHHHHHhccccc-chhHHH
Confidence 66666655544 45777777777777766665 444555555544444432 3332 22222221110000 112222
Q ss_pred HHhC-----CCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----
Q 005642 313 YSSC-----GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS---- 383 (686)
Q Consensus 313 ~~~~-----g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---- 383 (686)
+++. ..-+.|++++-.+.+.=+.+--.++--|.+.++..+|..+.+++.. ..|-......+.. ...|
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~--aalGQe~g 334 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF--AALGQETG 334 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH--HHhhhhcC
Confidence 2322 2335566665555544445555666667778888888777666532 2232222222222 2222
Q ss_pred ---ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHH
Q 005642 384 ---SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTI-ITFTAILSACDHCGLVKEGQKW 459 (686)
Q Consensus 384 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~ 459 (686)
.+.-|.+.|...-+.+ ..-|. .--.++..++.-..++|+.+.+
T Consensus 335 SreHlKiAqqffqlVG~Sa---------------------------------~ecDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESA---------------------------------LECDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred cHHHHHHHHHHHHHhcccc---------------------------------cccccccchHHHHHHHHHHHHHHHHHHH
Confidence 2233333333332222 22121 1233444555556678888888
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF--EADVGMWSS-ILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
++.+. .+-. .|......+..+++..|.+.+|.++|-.... ..+..+|.+ +.++|.+.+.++.|..++-++- .|
T Consensus 382 lnSi~-sYF~-NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~ 457 (557)
T KOG3785|consen 382 LNSIE-SYFT-NDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TP 457 (557)
T ss_pred HHHHH-HHhc-CcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--Cc
Confidence 88877 3333 3334445678999999999999999988741 125556554 5567788999999877765443 23
Q ss_pred C-CchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 537 E-NACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 537 ~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
. .......+++.|.+.+.+=-|.+.|+.+...
T Consensus 458 ~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 458 SERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 3 3334556678999999999999999987654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-08 Score=107.09 Aligned_cols=174 Identities=18% Similarity=0.088 Sum_probs=95.8
Q ss_pred CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHH
Q 005642 185 GKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261 (686)
Q Consensus 185 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 261 (686)
+++++|...+++..+ .+..+|..+...+...|++++|+..|++..+.+ +.+...+..+...+...|++++|...++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 335556666655443 234556666666666666666666666666642 2234455555666666666666666666
Q ss_pred HHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cC-CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc---
Q 005642 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VY-DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL--- 334 (686)
Q Consensus 262 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--- 334 (686)
++.+.++. +...+..++..+...|++++|...+++.. .| ++..+..+..++...|+.++|...+.++...++
T Consensus 397 ~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~ 475 (553)
T PRK12370 397 ECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL 475 (553)
T ss_pred HHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH
Confidence 66665422 22222223334455666666666666553 12 233455566666666777777776666544322
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNK 362 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (686)
...+.+...|...| ++|...++.+.+
T Consensus 476 ~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 476 IAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 23444444555555 356665555543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-08 Score=90.66 Aligned_cols=155 Identities=12% Similarity=0.132 Sum_probs=129.3
Q ss_pred HHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCC
Q 005642 412 DFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGC 488 (686)
Q Consensus 412 ~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 488 (686)
-.|...|+ .|...+++..+.... +..+|..+...|.+.|..+.|.+.|++.. .+.| +.++.|..+..+|..|+
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHHHhCCC
Confidence 33444444 444444444443222 56789999999999999999999999988 4667 68999999999999999
Q ss_pred hHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHH
Q 005642 489 LNEAVNLIEQMPFEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564 (686)
Q Consensus 489 ~~~A~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (686)
+++|...|++....|. ..+|.++.-+..+.|+.+.|...+++.++.+|+.+.....++....+.|++..|..+++.
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 9999999999854443 678999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhcCC
Q 005642 565 MREKHV 570 (686)
Q Consensus 565 ~~~~~~ 570 (686)
....+.
T Consensus 199 ~~~~~~ 204 (250)
T COG3063 199 YQQRGG 204 (250)
T ss_pred HHhccc
Confidence 886554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5e-09 Score=96.84 Aligned_cols=230 Identities=14% Similarity=0.060 Sum_probs=182.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcc--cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC--CCchh-HHHHHHHHHhCCCh
Q 005642 276 SALLDTYSKRGMPSDACKLFSELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLIS-WNSMIVGLSQNGSP 350 (686)
Q Consensus 276 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~ 350 (686)
+-+..+|.+.|.+.+|.+.|+... .+-+.+|-.|-++|.+..+.+.|+.++.+-.+ |..+| ..-+...+-..++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 668888999999999998888766 45677888888999999999999999988776 33344 34566777788999
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHH
Q 005642 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRN 430 (686)
Q Consensus 351 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~ 430 (686)
++|.++|+...+. .+.+......+...|.-.++.+.|..+|+++.+.|+.
T Consensus 307 ~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~----------------------------- 356 (478)
T KOG1129|consen 307 EDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ----------------------------- 356 (478)
T ss_pred HHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-----------------------------
Confidence 9999999998875 3455666667777777788888888888888777643
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHH
Q 005642 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE--IEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVG 506 (686)
Q Consensus 431 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~ 506 (686)
++..|+.+.-+|.-.+++|-++..|++... .-..|+ .++|-.+.......|++.-|.+.|+-.- ..| ...
T Consensus 357 -----speLf~NigLCC~yaqQ~D~~L~sf~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 357 -----SPELFCNIGLCCLYAQQIDLVLPSFQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred -----ChHHHhhHHHHHHhhcchhhhHHHHHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 677888888888889999999999998873 333353 6788888888888999999999998763 344 467
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 541 (686)
.++.|.-.-.+.|++++|..++..+....|+-...
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 78888888889999999999999999988874433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.4e-08 Score=106.52 Aligned_cols=207 Identities=12% Similarity=-0.045 Sum_probs=118.5
Q ss_pred HHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 005642 319 IEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395 (686)
Q Consensus 319 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 395 (686)
+++|...+++..+. +...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...++.+
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44555555554432 33455555566666666666666666666542 222344555555566666666666666655
Q ss_pred HHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-Chh
Q 005642 396 TIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIE 474 (686)
Q Consensus 396 ~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~ 474 (686)
.+... . +...+..++..+...|++++|...+++..+. .+| ++.
T Consensus 399 l~l~P---------------------------------~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~ 442 (553)
T PRK12370 399 LKLDP---------------------------------T-RAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPI 442 (553)
T ss_pred HhcCC---------------------------------C-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHH
Confidence 54321 1 1112222333445567788888888877632 234 455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHc---cCCCCchhHHHHHHHH
Q 005642 475 HYSCMVDLFARAGCLNEAVNLIEQMP-FEADV-GMWSSILRGCVAHGDKGLGRKVAERMIE---LDPENACAYIQLSSIF 549 (686)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~ 549 (686)
.+..+..++...|++++|...++++. ..|+. ..++.+...+...| +.|...++++++ ..|.++. .+..+|
T Consensus 443 ~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~ 517 (553)
T PRK12370 443 LLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPG---LLPLVL 517 (553)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCch---HHHHHH
Confidence 56777777888888888888887763 44443 33444555556666 366666666655 3343322 356666
Q ss_pred hhcCCcchHHHHHHHHHhc
Q 005642 550 ATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~ 568 (686)
.-.|+-+.+..+ +++.+.
T Consensus 518 ~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 518 VAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHhhhHHHHHH-HHhhcc
Confidence 677777777766 666543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-06 Score=89.27 Aligned_cols=102 Identities=14% Similarity=0.212 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-CHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVN--LIEQM-PFEA-DVGMWSS 510 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ 510 (686)
....|......+...|..++|.+.|.... -+.| .+....++..++.+.|+..-|.. ++..+ ++.| +...|..
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 44556666667778899999999999877 5778 57889999999999998888877 77766 5677 5888999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 511 ILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 511 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
+...+.+.|+.+.|...|..+.++++.+|.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999998887653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-06 Score=87.19 Aligned_cols=217 Identities=17% Similarity=0.242 Sum_probs=142.0
Q ss_pred HHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 005642 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 390 (686)
Q Consensus 311 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 390 (686)
.-+...|+++.|...|-+... .-..+.+.....+|.+|+.+++.++..+. -..-|..+...|+..|+++.|.+
T Consensus 714 ~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHH
Confidence 344455666666655544321 12234455667788888888887776532 23346677778888888888888
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 005642 391 VFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468 (686)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 468 (686)
+|.+. ..++-.|++|.+.|+ +|.++-.+. .|.......|.+-..-.-.+|++.+|.+++-.+-
T Consensus 787 lf~e~---------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~---- 851 (1636)
T KOG3616|consen 787 LFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---- 851 (1636)
T ss_pred HHHhc---------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----
Confidence 87643 234556788888887 666665543 2444445566666666778888888888775432
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 005642 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548 (686)
Q Consensus 469 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 548 (686)
.|+. -+.+|-+.|..++.+++.++..-..-..+...+..-+...|+++.|+..|-++-+ |....++
T Consensus 852 -~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnm 917 (1636)
T KOG3616|consen 852 -EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNM 917 (1636)
T ss_pred -CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHH
Confidence 2443 4567888888888888888763222245566677778888898888877765443 5556677
Q ss_pred HhhcCCcchHHHHHH
Q 005642 549 FATSGEWEKSSLIRD 563 (686)
Q Consensus 549 ~~~~g~~~~a~~~~~ 563 (686)
|...+.|++|-++.+
T Consensus 918 yk~s~lw~dayriak 932 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAK 932 (1636)
T ss_pred hhhhhhHHHHHHHHh
Confidence 777778877776654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.7e-06 Score=80.12 Aligned_cols=386 Identities=12% Similarity=0.011 Sum_probs=211.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhH-HHHHHHHHhcC-ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 005642 171 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW-NSMISGYISNN-EDTEALLLFHKMRRNGVLEDASTLASVLSACS 248 (686)
Q Consensus 171 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 248 (686)
...-...+..|...++-+.|...+...++.-...- |.|+..+-+.| +..++.--+.+.+.. .+.-......++..-.
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvre-cp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRE-CPMALQVIEALLELGV 175 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHh-cchHHHHHHHHHHHhh
Confidence 33445667788888999999999988887543333 33333333332 222333333333222 1111111111111100
Q ss_pred ccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHH--HhcCChhHHHHHHHhcc-----cCCchhHHHHHHHHHhCCCHHH
Q 005642 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY--SKRGMPSDACKLFSELK-----VYDTILLNTMITVYSSCGRIED 321 (686)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~ 321 (686)
+ ..+.+. ..|-....+|.......-+.++ +-.++...|...+-.+. +.++.....+.+.+...|+.++
T Consensus 176 ~--g~e~~S---~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~ 250 (564)
T KOG1174|consen 176 N--GNEINS---LVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQ 250 (564)
T ss_pred c--chhhhh---hhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchH
Confidence 0 011111 1111222233332222233333 33344444444433222 4577788899999999999999
Q ss_pred HHHHHhhCCCCCchhHHHH---HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 005642 322 AKHIFRTMPNKSLISWNSM---IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398 (686)
Q Consensus 322 A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 398 (686)
|...|++..--|+.+...| ...+.+.|+++....+...+... ..-+...|..-.......++++.|+.+-++.++.
T Consensus 251 a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 251 AEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred HHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 9999998876655443332 33456788888887777776543 1222333333334445667788888877777664
Q ss_pred CCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHH
Q 005642 399 GLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476 (686)
Q Consensus 399 ~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 476 (686)
+.. +...+-.-...+...++ +|.--|+..+... +-+...|..|+..|...|++.+|.-.-+...+. +..+..+.
T Consensus 330 ~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~L 405 (564)
T KOG1174|consen 330 EPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSL 405 (564)
T ss_pred Ccc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhh
Confidence 321 12222111222233333 5666666655332 124567777777777777777777766665532 22344554
Q ss_pred HHHH-HHHHh-cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc
Q 005642 477 SCMV-DLFAR-AGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552 (686)
Q Consensus 477 ~~l~-~~~~~-~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 552 (686)
..++ ..+.- ...-++|..++++. ...|+ ....+.+...|...|..+.++.++++.+...|+. ..+..|+.++...
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQ 484 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHh
Confidence 4442 22222 22346677777765 46665 4445666677777777777777777777777744 4577777777777
Q ss_pred CCcchHHHHHHHHHhc
Q 005642 553 GEWEKSSLIRDIMREK 568 (686)
Q Consensus 553 g~~~~a~~~~~~~~~~ 568 (686)
..+++|.+.|......
T Consensus 485 Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALRQ 500 (564)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 7777777777766553
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-06 Score=92.61 Aligned_cols=538 Identities=13% Similarity=0.035 Sum_probs=309.3
Q ss_pred hhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005642 23 VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP 99 (686)
Q Consensus 23 ~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 99 (686)
.+...|..+....+.++-.++|..|...|+.--+...|.+.|+..-+ .+..++-.....|++..+++.|.++.-...
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 34445555555556666666899999999988899999999998875 366789999999999999999999844443
Q ss_pred CC---CcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCCh-hhHH
Q 005642 100 QK---NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD-FCLS 175 (686)
Q Consensus 100 ~~---~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 175 (686)
+. ..-.++.+-++......++...+..-++...+.. +.|...|..++.+|.++|.+..|.++|++....++ .+|.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 31 1122333334443334456666766677766654 33788999999999999999999999988875332 3344
Q ss_pred HHH--HHHHccCCHHHHHHHHhhcCCC----------ChhhHHHHHHHHHhcCChhHHHHHHHHHHH-------CCCCcC
Q 005642 176 ALI--SGYANCGKMNDARRVFDRTTDT----------SSVMWNSMISGYISNNEDTEALLLFHKMRR-------NGVLED 236 (686)
Q Consensus 176 ~li--~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~ 236 (686)
..- ..-+..|.+.+|...+..+... -..++-.+...+.-.|-...|.+++++-++ .....+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 332 3356789999998888765431 122333333333334444444444443322 111112
Q ss_pred HHHHHHHHHHH-----------------------HccCCh---h---hHHHHHHHHHHcCCCchHHHHHHHHHHHHh---
Q 005642 237 ASTLASVLSAC-----------------------SSLGFL---E---HGKQVHGHACKVGVIDDVIVASALLDTYSK--- 284 (686)
Q Consensus 237 ~~~~~~ll~~~-----------------------~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--- 284 (686)
...|..+-.+| ...+.. + .+.+.+-.-++ +..+...|..|+..|.+
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFL 790 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHH
Confidence 22222222221 111111 1 00000000000 11223344444444433
Q ss_pred -cCC----hhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhH
Q 005642 285 -RGM----PSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEA 353 (686)
Q Consensus 285 -~g~----~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 353 (686)
.|. ...|...+.... ..+...|+.|.-. ...|.+.-|...|-+... .+..+|.++...+.++.+++.|
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHh
Confidence 221 224555555544 3355667766655 555677777666655432 3556788888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH----hCCCcchhHHHHHHHHHHhchh----------
Q 005642 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI----IGLDSDQIISTSLVDFYCKCGY---------- 419 (686)
Q Consensus 354 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~---------- 419 (686)
...|...+.. .+.+...+..........|+.-+...+|..--+ .|--+...-|.+........|+
T Consensus 870 ~~af~~~qSL-dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 870 EPAFSSVQSL-DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred hHHHHhhhhc-CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 8888877663 222334444333334455666666666664221 2223444444333333334433
Q ss_pred --HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHH----HHHHHHHhcCChHHHH
Q 005642 420 --DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS----CMVDLFARAGCLNEAV 493 (686)
Q Consensus 420 --~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~ 493 (686)
.|.-.+..... +.+-+...|.......-+.+.+..|.+...+...-...+-+...|+ ...+.+...|.++.|.
T Consensus 949 i~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~ 1027 (1238)
T KOG1127|consen 949 ISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAK 1027 (1238)
T ss_pred hhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHh
Confidence 22222333332 2333557777777777788888888887777642222233444444 4556677788888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch---hHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC---AYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 494 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
..+.......+...-..-+.. --.++++++...|++++.+..++.. ....++......+.-+.|...+=+...
T Consensus 1028 ~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1028 KASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 777766544444333333333 3367899999999999986554433 334444555567777788776554443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.3e-05 Score=82.39 Aligned_cols=272 Identities=11% Similarity=0.079 Sum_probs=156.7
Q ss_pred cCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCC-----------CC-Ch----hhH------
Q 005642 18 HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-----------RR-NC----FSW------ 75 (686)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~-~~----~~~------ 75 (686)
.|.+....++|+.++..|. .+.+ ..-.+...-..+|+.+-..+++.+=. .+ |. .+|
T Consensus 407 ~Gq~sPLLqYFg~LLdqGk-LNk~-ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp 484 (1666)
T KOG0985|consen 407 PGQPSPLLQYFGTLLDQGK-LNKY-ETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVP 484 (1666)
T ss_pred CCCCCcHHHHHHHHHhccc-ccHH-HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCc
Confidence 4566677778888877773 2332 33444444445566555555554322 11 11 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 005642 76 NAMIEGFMKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154 (686)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g 154 (686)
+..+.+|+..|.+++++-...+.-. || |-.+|+...+. .++.+.+....+..... ...-.+.+.+.+...+
T Consensus 485 ~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r~---sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N 556 (1666)
T KOG0985|consen 485 AKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKRS---SPDQALQFAMMLVQDEE--PLADIEQIVDLFMELN 556 (1666)
T ss_pred HHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHcc---ChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHH
Confidence 2344455555555555554444322 43 55667777665 56677777766666432 3334555666666655
Q ss_pred ChHHHHHHHhccCC---------------------CC------------hhhHHHHHHHHHccCCHHHHHHHHhhcCCC-
Q 005642 155 DFNSANQVLNMMKE---------------------PD------------DFCLSALISGYANCGKMNDARRVFDRTTDT- 200 (686)
Q Consensus 155 ~~~~A~~~~~~~~~---------------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 200 (686)
....+...+-.+.+ |+ ..-+..+.+.|.+.|-...|++.+..+..-
T Consensus 557 ~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIK 636 (1666)
T KOG0985|consen 557 LIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIK 636 (1666)
T ss_pred hhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHH
Confidence 55555554433332 11 112445666677888888888777665431
Q ss_pred ChhhHHH-----HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHc---------
Q 005642 201 SSVMWNS-----MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV--------- 266 (686)
Q Consensus 201 ~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------- 266 (686)
...+.+. -+..|.-.-.++++++.++.|...++..|..+...+..-|...=-.+...++|+.....
T Consensus 637 R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgS 716 (1666)
T KOG0985|consen 637 RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGS 716 (1666)
T ss_pred HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHH
Confidence 1111111 12344455567888888888888888888877777777776665566666777665432
Q ss_pred --CCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 267 --GVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 267 --g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
++.-|+.+.-..|.+-++.|++.+.+++.++-.
T Consensus 717 ivn~seDpevh~KYIqAA~kt~QikEvERicresn 751 (1666)
T KOG0985|consen 717 IVNFSEDPEVHFKYIQAACKTGQIKEVERICRESN 751 (1666)
T ss_pred HhccccCchHHHHHHHHHHhhccHHHHHHHHhccc
Confidence 244566666667888888888888887776543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-07 Score=96.99 Aligned_cols=282 Identities=15% Similarity=0.151 Sum_probs=162.0
Q ss_pred HHHHHHhcCChhHHHHHHHhccc--CC-chhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc--hh-HHHHHHHHHhC----
Q 005642 278 LLDTYSKRGMPSDACKLFSELKV--YD-TILLNTMITVYSSCGRIEDAKHIFRTMPNKSL--IS-WNSMIVGLSQN---- 347 (686)
Q Consensus 278 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~-~~~li~~~~~~---- 347 (686)
....+...|++++|++.+++-.. .| ..........+.+.|+.++|..++..+.+.|+ .. |..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34566778888888888876552 23 33455667778888888888888888776433 33 33344443222
Q ss_pred -CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH-HHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHH
Q 005642 348 -GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE-LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALA 423 (686)
Q Consensus 348 -g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~ 423 (686)
.+.+....+|+++... -|.......+.-.+.....+. .+..++..+...|+++ +++.|-..|..... -...
T Consensus 90 ~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 2455666777777654 244444433332333322332 3444445556666543 44445445553322 2222
Q ss_pred HHHHHH----HCC----------CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhc
Q 005642 424 LFNEMR----NTG----------VKPTI--ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARA 486 (686)
Q Consensus 424 ~~~~m~----~~~----------~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 486 (686)
++.... ..+ -+|.. .++.-+...|...|++++|+++.++.+ ...|+ ++.|..-...+-+.
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI---~htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI---EHTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHC
Confidence 333322 211 12233 234455566777778888888877776 23453 67777777777788
Q ss_pred CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC--CCC-------chhHHHHHHHHhhcCCc
Q 005642 487 GCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELD--PEN-------ACAYIQLSSIFATSGEW 555 (686)
Q Consensus 487 g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~ 555 (686)
|++++|.+.++... ..+ |...-+-.+..+.+.|++++|...+......+ |.. .......+.+|.+.|++
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 88888877777774 333 44444445556677777887777776665433 211 11123456677777777
Q ss_pred chHHHHHHHHHh
Q 005642 556 EKSSLIRDIMRE 567 (686)
Q Consensus 556 ~~a~~~~~~~~~ 567 (686)
..|.+.+..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-07 Score=92.81 Aligned_cols=212 Identities=12% Similarity=-0.005 Sum_probs=130.4
Q ss_pred CCCHHHHHHHHhhCCCC---C----chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 005642 316 CGRIEDAKHIFRTMPNK---S----LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388 (686)
Q Consensus 316 ~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 388 (686)
.+..+.+..-+.++... + ...|..+...|...|++++|...|++..+.. +.+...|+.+...+...|+++.|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34455555555544421 1 2346666666667777777777776666642 22345666666666677777766
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 005642 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468 (686)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 468 (686)
...|+..++.. | -+..++..+...+...|++++|.+.|+...+
T Consensus 118 ~~~~~~Al~l~--P--------------------------------~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--- 160 (296)
T PRK11189 118 YEAFDSVLELD--P--------------------------------TYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--- 160 (296)
T ss_pred HHHHHHHHHhC--C--------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence 66666655432 1 1456777777788888999999999998873
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-------ccCCCCc
Q 005642 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMI-------ELDPENA 539 (686)
Q Consensus 469 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~p~~~ 539 (686)
..|+..........+...+++++|...|++.. ..|+. |.. .......|+...+ ..++.+. ++.|+..
T Consensus 161 ~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ 236 (296)
T PRK11189 161 DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLC 236 (296)
T ss_pred hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHH
Confidence 44543222222333456778999999986642 23332 221 2222334555443 2333333 3455666
Q ss_pred hhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.+|..++.++...|++++|...+++..+..
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 789999999999999999999999887644
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-06 Score=86.21 Aligned_cols=391 Identities=13% Similarity=0.086 Sum_probs=218.2
Q ss_pred HHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCC--CC-hhhHHHHHHHHHhcCChhHH
Q 005642 148 NLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD--TS-SVMWNSMISGYISNNEDTEA 221 (686)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A 221 (686)
++.+..|+++.|...|.+... +|.+.|+.-..+|.+.|++++|.+=-.+-.+ |+ ...|+-...++.-.|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 445566888888888876652 5566677777777777777777765554433 32 34677777777777777777
Q ss_pred HHHHHHHHHCCCCc-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHH-----HHHHhcCChhHHHHHH
Q 005642 222 LLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL-----DTYSKRGMPSDACKLF 295 (686)
Q Consensus 222 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~ 295 (686)
+.-|.+-++. .| |...+..+..+. ..+.+. +. .-.++..+..+. +.+...-.+-.-++.+
T Consensus 90 ~~ay~~GL~~--d~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 90 ILAYSEGLEK--DPSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHhhc--CCchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 7777776664 33 333444444444 111110 10 111222222221 1111111111111111
Q ss_pred HhcccCCchh---HHHHHHHHHhCCCHHHH-HHHHhh-----CCCC------------Cc----------hhHHHHHHHH
Q 005642 296 SELKVYDTIL---LNTMITVYSSCGRIEDA-KHIFRT-----MPNK------------SL----------ISWNSMIVGL 344 (686)
Q Consensus 296 ~~~~~~~~~~---~~~li~~~~~~g~~~~A-~~~~~~-----~~~~------------~~----------~~~~~li~~~ 344 (686)
..-. .+... ...++.+.......+.- ...-.. +..| |. .-...+..+.
T Consensus 156 ~~~p-~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 156 QKNP-TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hcCc-HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 1111 00000 01111111111000000 000000 0001 00 1244566677
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh-----
Q 005642 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419 (686)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----- 419 (686)
.+..+++.|++-+....+.. -+..-++....++...|.+..+...-...++.|- -...-|+.+...+.+.|.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhH
Confidence 77777888888887777653 3444445666667777777777776666666552 222333434444444333
Q ss_pred ----HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHH
Q 005642 420 ----DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI-EHYSCMVDLFARAGCLNEAVN 494 (686)
Q Consensus 420 ----~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 494 (686)
.++..|.+.......|+.. .+....+++....+... -+.|.. .-...-+..+.+.|++..|+.
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 5555555544333332221 12233344444433332 334432 222233667788999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 495 LIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 495 ~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.|.++ ...| |...|....-+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|+.|.+.+.+..+.
T Consensus 380 ~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 380 HYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988 3456 67779999999999999999999999999999999999999999999999999999999966653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-05 Score=83.12 Aligned_cols=249 Identities=13% Similarity=0.066 Sum_probs=142.1
Q ss_pred HHHHHhcCCcHHHHHHhccCCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHHHHHHHH----hcCh
Q 005642 48 LQMYMRCGNPTDALLLFDEMPR--RNC-FSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFA----KADL 118 (686)
Q Consensus 48 ~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~ll~~~~----~~~~ 118 (686)
.+.+...|++++|+..++.-.. .|. .........+.+.|+.++|..+|..+.+ |+...|-..+..|. ....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 4556788999999999987664 243 4556678888999999999999999976 76666665555554 2112
Q ss_pred hhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH-HHHHHHhccCCCCh-hhHHHHHHHHHccCCHHHHHHHHhh
Q 005642 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN-SANQVLNMMKEPDD-FCLSALISGYANCGKMNDARRVFDR 196 (686)
Q Consensus 119 ~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 196 (686)
.+.+....+++.+...- |.......+.-.+..-..+. .+...+..+....+ .+|+.+-..|....+.+-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 34566667777665543 22222222222222211222 22223333333332 4555555555544444444444432
Q ss_pred cC------------------CCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHccCChhh
Q 005642 197 TT------------------DTSS--VMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-ASTLASVLSACSSLGFLEH 255 (686)
Q Consensus 197 ~~------------------~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~ 255 (686)
.. .|.. +++..+...|-..|++++|++++++.++. .|+ ...|..-.+.+-+.|++.+
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHH
Confidence 11 0111 23345555666666777777777666663 343 4456666666666677777
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccC
Q 005642 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301 (686)
Q Consensus 256 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 301 (686)
|.+.++.....+. -|...-+..+..+.++|++++|.+++.....+
T Consensus 247 Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 247 AAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 7666666666542 25555555566666666666666666655533
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-07 Score=91.23 Aligned_cols=219 Identities=11% Similarity=0.076 Sum_probs=131.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCh
Q 005642 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA-SVISACANISSL 385 (686)
Q Consensus 307 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~ 385 (686)
..+.+++...|+.+.+..-...-..|.......+...+...++-+.++.-+++.......++..++. .....+...|++
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY 118 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH
Confidence 3444555555555544444434344444444444433333344445555444443333232222222 223344566777
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005642 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465 (686)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (686)
++|.+++... .+.......+..+.+.++++.|.+.++.|.
T Consensus 119 ~~AL~~l~~~---------------------------------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~- 158 (290)
T PF04733_consen 119 EEALKLLHKG---------------------------------------GSLELLALAVQILLKMNRPDLAEKELKNMQ- 158 (290)
T ss_dssp HHHHCCCTTT---------------------------------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH-
T ss_pred HHHHHHHHcc---------------------------------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence 7666655421 144555667778888899999999999887
Q ss_pred hcCCCCChh---HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 466 QYHIDPEIE---HYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 466 ~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
.+..|.. ...+.+....-.+.+.+|..+|+++. ..+++.+.+.+..+....|++++|...++++++.+|.++.
T Consensus 159 --~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 159 --QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp --CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred --hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 3344422 12223333333346899999999983 4567788888888889999999999999999999999988
Q ss_pred hHHHHHHHHhhcCCc-chHHHHHHHHHh
Q 005642 541 AYIQLSSIFATSGEW-EKSSLIRDIMRE 567 (686)
Q Consensus 541 ~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 567 (686)
+..+++-+....|+. +.+.+++.+++.
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 888888888888888 556678887776
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-07 Score=94.13 Aligned_cols=220 Identities=15% Similarity=0.073 Sum_probs=143.0
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HH
Q 005642 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DA 421 (686)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A 421 (686)
+.+.|+..+|.-.|+..+... +-+...|..|.......++-..|+..+.+..+.. +.|.....+|.-.|...|. +|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 334444444444444444331 1223344444444444444444444444444432 3344445555555555554 55
Q ss_pred HHHHHHHHHCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005642 422 LALFNEMRNTGVK--------PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493 (686)
Q Consensus 422 ~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 493 (686)
+..+++-....++ ++...-.. ..+..........++|-++....+..+|+++...|.-.|.-.|.+++|+
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 5555554433211 00000000 1222333445566777777756666688999999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 494 NLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 494 ~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+.|+.+ ..+| |...||.|...+....+.++|+..|.+++++.|....+...|+-.|...|.|++|.+.+=....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999988 5777 5677999999999999999999999999999999999999999999999999999998766554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.2e-07 Score=79.22 Aligned_cols=193 Identities=11% Similarity=0.010 Sum_probs=158.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 282 (686)
.+...|..+|.+.|++..|..-+++.++.+ +-+..++..+...|.+.|+.+.|.+.|+..++.. +-+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 356778889999999999999999998852 3345688888889999999999999999999975 44677889999999
Q ss_pred HhcCChhHHHHHHHhcc-cC----CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC---chhHHHHHHHHHhCCChhhHH
Q 005642 283 SKRGMPSDACKLFSELK-VY----DTILLNTMITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEAL 354 (686)
Q Consensus 283 ~~~g~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 354 (686)
|..|++++|...|++.. .| -..+|..+.-+..+.|+.+.|...|++..+.| +.+.-.+.......|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999876 33 35588888889999999999999999887643 356777888888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 005642 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398 (686)
Q Consensus 355 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 398 (686)
..++.....+. ++..+.-..|..--..|+.+.+.+.=..+.+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99988887765 88888888888888888888777766655543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-05 Score=74.50 Aligned_cols=235 Identities=11% Similarity=0.065 Sum_probs=155.1
Q ss_pred HHHhcCChHHHHHHHhccCC-CChhhHHHHHHH--HHccCCHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCChhHHHHH
Q 005642 149 LYGKCGDFNSANQVLNMMKE-PDDFCLSALISG--YANCGKMNDARRVFDRTTD-TSSVMWNSMISGYISNNEDTEALLL 224 (686)
Q Consensus 149 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 224 (686)
.+.+.+.+.+|+++...|.+ ++...-..-+.+ .-..+++..+..+.++.+. .+..+.+.......+.|++++|++-
T Consensus 87 SLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 34566888899999888876 332222222322 3467889999999998884 6667777777777899999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHH----HHHHHHHHhcCCh-hHHHHHHHhcc
Q 005642 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA----SALLDTYSKRGMP-SDACKLFSELK 299 (686)
Q Consensus 225 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~l~~~~~~~g~~-~~A~~~~~~~~ 299 (686)
|+...+-+--.....|+..+ ++.+.++.+.|.+...++++.|+...+..- +..+++-. .|+. ..+..-
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgNt~~lh~Sa----- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGNTLVLHQSA----- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccchHHHHHHH-----
Confidence 99988754333445665544 455778999999999999998864322211 11111000 0110 000000
Q ss_pred cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC-----CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 005642 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-----SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374 (686)
Q Consensus 300 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 374 (686)
-+..+|.-...+.+.++.+.|.+.+-.|+.+ |++|...+.-. -..+++.+..+-+.-+...+ +....||..
T Consensus 240 --l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFAN 315 (459)
T KOG4340|consen 240 --LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFAN 315 (459)
T ss_pred --HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHH
Confidence 1224455556678889999999999999863 77777665433 22456666666666666653 345679999
Q ss_pred HHHHHHccCChHHHHHHHHH
Q 005642 375 VISACANISSLELGEQVFAR 394 (686)
Q Consensus 375 ll~~~~~~~~~~~a~~~~~~ 394 (686)
++-.||+..-++.|..++.+
T Consensus 316 lLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhh
Confidence 99999999999998888764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.7e-05 Score=79.14 Aligned_cols=199 Identities=17% Similarity=0.152 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhcc--CCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChh------------------
Q 005642 144 SSLVNLYGKCGDFNSANQVLNMM--KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV------------------ 203 (686)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------------ 203 (686)
-+.|..|.+.|.+..|.+....- ...|......+..++.+..-+++|-.+|+++..++-.
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielar 698 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR 698 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH
Confidence 45677888999888877654221 1244444444445544444444444444444332210
Q ss_pred --------h-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHH
Q 005642 204 --------M-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274 (686)
Q Consensus 204 --------~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 274 (686)
. -..-...+.+.|+++.|+.-|-+.. .....+.+......+.+|..+++.+.... .-...
T Consensus 699 fafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~y 767 (1636)
T KOG3616|consen 699 FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGY 767 (1636)
T ss_pred hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--ccccc
Confidence 0 0011122223344444444443221 11223334445556666666666555542 12234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC--CchhHHHHHHHHHhCCChhh
Q 005642 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIE 352 (686)
Q Consensus 275 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 352 (686)
|..+.+.|...|+++.|.++|.+. ..++--|..|.+.|++++|.++-++...| .++.|-+-..-+-.+|++.+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~e 842 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAE 842 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhh
Confidence 455666666666666666666532 23444556666666666666666655544 22344444455555666666
Q ss_pred HHHHHH
Q 005642 353 ALDLFC 358 (686)
Q Consensus 353 A~~~~~ 358 (686)
|.++|-
T Consensus 843 aeqlyi 848 (1636)
T KOG3616|consen 843 AEQLYI 848 (1636)
T ss_pred hhheeE
Confidence 655543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-06 Score=84.77 Aligned_cols=91 Identities=12% Similarity=-0.127 Sum_probs=42.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHc
Q 005642 174 LSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSS 249 (686)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 249 (686)
|..+...+.+.|+.++|...|++..+ .+...|+.+...+...|++++|++.|++..+. .| +..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 33444444455555555555544332 23344555555555555555555555555442 22 23344444444444
Q ss_pred cCChhhHHHHHHHHHHc
Q 005642 250 LGFLEHGKQVHGHACKV 266 (686)
Q Consensus 250 ~~~~~~a~~~~~~~~~~ 266 (686)
.|++++|.+.++...+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 45555555555554443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.3e-05 Score=79.13 Aligned_cols=376 Identities=14% Similarity=0.123 Sum_probs=220.3
Q ss_pred hHHHHHH--HHHhcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CCcchHHHH
Q 005642 43 IANRLLQ--MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----------KNDFSWNML 109 (686)
Q Consensus 43 ~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----------~~~~~~~~l 109 (686)
+...+++ +|.--|+.|.|.+-.+-+. +-..|..|.+.+.+..+++-|.-.+-.|.. .|.....+-
T Consensus 728 TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eak 805 (1416)
T KOG3617|consen 728 TRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAK 805 (1416)
T ss_pred HHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhH
Confidence 4455554 4666788998888776654 345699999999999888888888777753 111111111
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC-CChhhHHHHHHHHHccCCHH
Q 005642 110 ISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALISGYANCGKMN 188 (686)
Q Consensus 110 l~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~ 188 (686)
..+++- ..+-++.|..++.+..+.. .|=..|-..|.+++|.++-+.=.+ .=..||......+-..++.+
T Consensus 806 vAvLAi-eLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 806 VAVLAI-ELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHH-HHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHH
Confidence 111111 1356888888888877642 233445567889998888755333 12346777777777788888
Q ss_pred HHHHHHhhcCC-----------------------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 005642 189 DARRVFDRTTD-----------------------TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245 (686)
Q Consensus 189 ~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 245 (686)
.|++.|++... +|...|.--...+-..|+.+.|+.+|...+. |.++.+
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr 946 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR 946 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence 88888875432 2333344444444456778888888776654 456777
Q ss_pred HHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCC--------
Q 005642 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG-------- 317 (686)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-------- 317 (686)
..+-.|+.++|.++-++ ..|......|.+.|-..|++.+|...|.+.. ++..-|+.|-..+
T Consensus 947 I~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ-----AFSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred eEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHhcCHHHHHHHH
Confidence 77778888888877654 2355555668889999999999998887653 3334444332222
Q ss_pred -------CHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHH--------HHHCCC--CCCHHHHHHHHHHHH
Q 005642 318 -------RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN--------MNKLDL--RMDKFSLASVISACA 380 (686)
Q Consensus 318 -------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~~g~--~p~~~t~~~ll~~~~ 380 (686)
+.-.|-+.|++..- -....+..|-+.|.+.+|+++--+ ++...+ ..|+...+.-..-++
T Consensus 1016 al~s~~~d~v~aArYyEe~g~----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEELGG----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE 1091 (1416)
T ss_pred HhhcCchhHHHHHHHHHHcch----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 22233333333321 122234456677777777654211 122222 335556666666677
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHH--HCCCCCCHH----HHHHHHHHHhccCCHH
Q 005642 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMR--NTGVKPTII----TFTAILSACDHCGLVK 454 (686)
Q Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~--~~~~~p~~~----~~~~ll~~~~~~g~~~ 454 (686)
...++++|..++....+. ...+..+...+-..-+-|.+|. ..+-.|+.. ....+...|.++|.+.
T Consensus 1092 ~~~qyekAV~lL~~ar~~---------~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh 1162 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCLAREF---------SGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYH 1162 (1416)
T ss_pred hHHHHHHHHHHHHHHHHH---------HHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchH
Confidence 777788877777655432 1122222222222222233332 111233433 4555667788888888
Q ss_pred HHHHHHHHH
Q 005642 455 EGQKWFDAM 463 (686)
Q Consensus 455 ~A~~~~~~~ 463 (686)
.|-+-|.+.
T Consensus 1163 ~AtKKfTQA 1171 (1416)
T KOG3617|consen 1163 AATKKFTQA 1171 (1416)
T ss_pred HHHHHHhhh
Confidence 777666543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00011 Score=85.53 Aligned_cols=362 Identities=12% Similarity=0.031 Sum_probs=196.5
Q ss_pred HHHHccCCHHHHHHHHhhcCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhH
Q 005642 179 SGYANCGKMNDARRVFDRTTDTSSV--MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256 (686)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 256 (686)
..+...|++.+|............. ............|+++.+...++.+.......+..........+...|+++++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 3455566666666555544432211 11112223444566666555555431110111111222233344556777777
Q ss_pred HHHHHHHHHcCC------Cch--HHHHHHHHHHHHhcCChhHHHHHHHhccc--C--Cc----hhHHHHHHHHHhCCCHH
Q 005642 257 KQVHGHACKVGV------IDD--VIVASALLDTYSKRGMPSDACKLFSELKV--Y--DT----ILLNTMITVYSSCGRIE 320 (686)
Q Consensus 257 ~~~~~~~~~~g~------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~~----~~~~~li~~~~~~g~~~ 320 (686)
...+....+.-- .+. ......+...+...|++++|...+++... + +. ...+.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 777766544210 111 12223334455667777777777766542 1 11 23344555666777777
Q ss_pred HHHHHHhhCCC-------CC--chhHHHHHHHHHhCCChhhHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHccCC
Q 005642 321 DAKHIFRTMPN-------KS--LISWNSMIVGLSQNGSPIEALDLFCNMNKL----DLR--M-DKFSLASVISACANISS 384 (686)
Q Consensus 321 ~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~ll~~~~~~~~ 384 (686)
+|...+++... +. ..++..+...+...|++++|...+++.... +.. + ....+..+...+...|+
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~ 588 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR 588 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence 77777766542 11 124455566777888888888887776542 211 1 12233344455666788
Q ss_pred hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005642 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464 (686)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 464 (686)
+++|...+.+.....-. .+.......+..+.......|+.++|.+.++...
T Consensus 589 ~~~A~~~~~~al~~~~~-----------------------------~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 589 LDEAEQCARKGLEVLSN-----------------------------YQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred HHHHHHHHHHhHHhhhc-----------------------------cCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887765442100 0100112334445556677888888888887765
Q ss_pred HhcCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 465 WQYHIDPEIEHY-----SCMVDLFARAGCLNEAVNLIEQMPFE--ADV----GMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 465 ~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
...........+ ......+...|+.+.|...+...... ... ..+..+..++...|+.++|...++++++
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 640 NLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 211111111101 11223445578888888888766311 111 1134566667788888899888888877
Q ss_pred cC------CCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 534 LD------PENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 534 ~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.. +....++..++.++...|+.++|...+.+..+..
T Consensus 720 ~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 720 NARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 32 1223456677888888999999999888887654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.2e-05 Score=80.04 Aligned_cols=81 Identities=14% Similarity=0.104 Sum_probs=52.9
Q ss_pred cCChHHHHHHHHhCC----CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 486 AGCLNEAVNLIEQMP----FEADV-GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 486 ~g~~~~A~~~~~~~~----~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
.++++++.+.|+++- ...+. +....++-.....+..+.|.+.+-+.....|.+......+.-++.-..+-.....
T Consensus 1051 kndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssa 1130 (1238)
T KOG1127|consen 1051 KNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSA 1130 (1238)
T ss_pred HhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHH
Confidence 578888888888872 22333 3345555566677888888888888888887777777777666654444444444
Q ss_pred HHHHHH
Q 005642 561 IRDIMR 566 (686)
Q Consensus 561 ~~~~~~ 566 (686)
+.+++.
T Consensus 1131 ileel~ 1136 (1238)
T KOG1127|consen 1131 ILEELE 1136 (1238)
T ss_pred HHHHHH
Confidence 444443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00061 Score=73.20 Aligned_cols=347 Identities=13% Similarity=0.116 Sum_probs=235.0
Q ss_pred hhHHHHHHHHHhhccCccchhhHHHHHHHHhCC--CCCchhhHHHHHHHHHhcCCcHHHHHHhccCC-CC-----ChhhH
Q 005642 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGI--LNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RR-----NCFSW 75 (686)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~ 75 (686)
+++-|..+|.- .-..-+++..+.++.++ ..|+. --..-+.+++..+-+.+-.++++++. ++ +...-
T Consensus 951 D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E~~dPe-~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen 951 DPDLWAKVLNE-----ENPYRRQLIDQVVQTALPETQDPE-EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQ 1024 (1666)
T ss_pred ChHHHHHHHhc-----cChHHHHHHHHHHHhcCCccCChH-HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhh
Confidence 34455555532 22234677778887775 33443 55677889999999999999999886 33 33345
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 005642 76 NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 155 (686)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 155 (686)
|.|+-...+. +.....+..+++..-|.. .+-..+... +-+++|..++... ..+....+.|+. .-+.
T Consensus 1025 nLLiLtAika-d~trVm~YI~rLdnyDa~---~ia~iai~~--~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ 1090 (1666)
T KOG0985|consen 1025 NLLILTAIKA-DRTRVMEYINRLDNYDAP---DIAEIAIEN--QLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGS 1090 (1666)
T ss_pred hhHHHHHhhc-ChHHHHHHHHHhccCCch---hHHHHHhhh--hHHHHHHHHHHHh-----cccHHHHHHHHH---Hhhh
Confidence 5555544443 455566666666441111 111122222 3466777776542 334444555554 3478
Q ss_pred hHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 005642 156 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235 (686)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 235 (686)
++.|.+.-++..+|. .|+.+..+-.+.|.+.+|++-|-+.. |+..|..++....+.|.|++-++++.-.++..-+|
T Consensus 1091 ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~ 1166 (1666)
T KOG0985|consen 1091 LDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP 1166 (1666)
T ss_pred HHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc
Confidence 899999888887765 68889999999999999998775544 46788999999999999999999998888876667
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHh
Q 005642 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315 (686)
Q Consensus 236 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 315 (686)
...+ .|+-+|++.+++.+.++++ ..|+......+.+-|...|.++.|.-+|. ++..|..|...+..
T Consensus 1167 ~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~ 1232 (1666)
T KOG0985|consen 1167 YIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVY 1232 (1666)
T ss_pred cchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHH
Confidence 6655 4788889988888776665 35777777788888999999999988887 45667777778888
Q ss_pred CCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 005642 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395 (686)
Q Consensus 316 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 395 (686)
.|++..|.+.-++. .+..+|..+-.+|...+.+.-| +|...++-....-..-++..|-..|-+++.+.+++..
T Consensus 1233 LgeyQ~AVD~aRKA--ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1233 LGEYQGAVDAARKA--NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHHHHhhhc--cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 88887777665543 3556777777777766655433 2333333334445566777777777777777776643
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.9e-05 Score=72.98 Aligned_cols=180 Identities=9% Similarity=0.036 Sum_probs=102.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHH-HHHH
Q 005642 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA-SALL 279 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l~ 279 (686)
+.-.--+...+...|++.+|+.-|...++. .|+ -.++..-...|...|+...|..-+...++ ++||-..- ---.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhc
Confidence 444556677777778888888888877653 233 23444444566777777777777777777 35554322 2234
Q ss_pred HHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHH
Q 005642 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359 (686)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (686)
..+.+.|.+++|..-|+.+...++. .|...++.+-+..+. ........+..+...|+...|+.....
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~--e~~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ--EHWVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH--HHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 4566777777777777766533221 000111111000000 001122334455567777888887777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 005642 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399 (686)
Q Consensus 360 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 399 (686)
+.+. .+-|...+..-..+|...|.+..|+.-++.+.+..
T Consensus 181 llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs 219 (504)
T KOG0624|consen 181 LLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS 219 (504)
T ss_pred HHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Confidence 7774 23355555566677777787777777666665544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-06 Score=85.56 Aligned_cols=86 Identities=10% Similarity=0.172 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-hHHHHHH
Q 005642 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDK-GLGRKVA 528 (686)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~-~~A~~~~ 528 (686)
.+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++++. ...| ++.++..++......|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 45566666666552 23345555666666666666666666666554 2233 344555555555555555 4455666
Q ss_pred HHHHccCCCCc
Q 005642 529 ERMIELDPENA 539 (686)
Q Consensus 529 ~~~~~~~p~~~ 539 (686)
.++....|+++
T Consensus 260 ~qL~~~~p~h~ 270 (290)
T PF04733_consen 260 SQLKQSNPNHP 270 (290)
T ss_dssp HHCHHHTTTSH
T ss_pred HHHHHhCCCCh
Confidence 66666666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4e-05 Score=72.07 Aligned_cols=315 Identities=16% Similarity=0.112 Sum_probs=170.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHH---HHHHccCCHHHHHHHHhhcCCCChhhH---HHHHHHH
Q 005642 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI---SGYANCGKMNDARRVFDRTTDTSSVMW---NSMISGY 212 (686)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~ 212 (686)
++.-.-.+...+...|++.+|+.-|....+.|...|.++. ..|...|+-.-|+.-|.++.+..+..+ -.-...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 4445556777777888888888888888877766666554 346666666666666666554222222 2223455
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHH
Q 005642 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292 (686)
Q Consensus 213 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 292 (686)
.+.|.++.|..-|+..++. .|+..+- ..+..+.-..+ ........+..+...|+...|+
T Consensus 117 lK~Gele~A~~DF~~vl~~--~~s~~~~---~eaqskl~~~~----------------e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQH--EPSNGLV---LEAQSKLALIQ----------------EHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhc--CCCcchh---HHHHHHHHhHH----------------HHHHHHHHHHHHhcCCchhhHH
Confidence 6666777777666666654 2322110 01110000000 0111112233344556666666
Q ss_pred HHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCC
Q 005642 293 KLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMP---NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366 (686)
Q Consensus 293 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 366 (686)
.....+. +-|...+..-..+|...|++..|+.-+.... ..+..++..+-..+...|+.+.++...++-.+ +.
T Consensus 176 ~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ld 253 (504)
T KOG0624|consen 176 EMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LD 253 (504)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cC
Confidence 6666554 2255556666666777777766665554443 34556666666677777777777777777665 45
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHH---HHHHH
Q 005642 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTII---TFTAI 443 (686)
Q Consensus 367 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~l 443 (686)
||....... -+.+.+..+.++.|.+.- ....|+ ++++-.+...+........ .+..+
T Consensus 254 pdHK~Cf~~------YKklkKv~K~les~e~~i---e~~~~t-----------~cle~ge~vlk~ep~~~~ir~~~~r~~ 313 (504)
T KOG0624|consen 254 PDHKLCFPF------YKKLKKVVKSLESAEQAI---EEKHWT-----------ECLEAGEKVLKNEPEETMIRYNGFRVL 313 (504)
T ss_pred cchhhHHHH------HHHHHHHHHHHHHHHHHH---hhhhHH-----------HHHHHHHHHHhcCCcccceeeeeehee
Confidence 665432211 111122222222221110 000111 3333334433332221222 33344
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 444 LSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
-.++...+++.+|++...+.. .+.| |+.++---..+|.-...+++|+.-|+..
T Consensus 314 c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 314 CTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred eecccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455666778888888888776 4566 4777777778888888888888888776
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.4e-05 Score=76.16 Aligned_cols=85 Identities=8% Similarity=-0.020 Sum_probs=37.4
Q ss_pred HHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHccCC
Q 005642 311 TVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDK--FSLASVISACANISS 384 (686)
Q Consensus 311 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~~~ 384 (686)
..+...|++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..+..+...+...|+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 344444444444444444432 1233444444555555555555555555443211 1111 122234444455555
Q ss_pred hHHHHHHHHHH
Q 005642 385 LELGEQVFARV 395 (686)
Q Consensus 385 ~~~a~~~~~~~ 395 (686)
+++|..+++.+
T Consensus 202 ~~~A~~~~~~~ 212 (355)
T cd05804 202 YEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6e-05 Score=75.49 Aligned_cols=408 Identities=14% Similarity=0.076 Sum_probs=245.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC--CC-hhhHHHHHHHHHccCCHHHHHHHH
Q 005642 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD-DFCLSALISGYANCGKMNDARRVF 194 (686)
Q Consensus 118 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~ 194 (686)
.++++.|...+...+...+. +...|+.-..+|...|++++|++--.+-.+ |+ ...|+....++.-.|++++|+.-|
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred cccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 37899999999998887644 888999999999999999999987766664 44 347899999999999999999999
Q ss_pred hhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHH-HHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCc
Q 005642 195 DRTTDT---SSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 270 (686)
Q Consensus 195 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 270 (686)
.+..+. |...++.+..++... . .+.+.|..- .-.++.-++.|-..+ ....+. .+++.+.+. +.
T Consensus 94 ~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~-----~~~~~~---~~l~~~~~~--p~ 160 (539)
T KOG0548|consen 94 SEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSL-----SDPAYV---KILEIIQKN--PT 160 (539)
T ss_pred HHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhh-----ccHHHH---HHHHHhhcC--cH
Confidence 998763 455677777666111 1 111111100 000112222221111 111111 111111111 00
Q ss_pred hHHHH---HHHHHHHHhcCChhH-HHHHHHhc-----ccC------------C----------chhHHHHHHHHHhCCCH
Q 005642 271 DVIVA---SALLDTYSKRGMPSD-ACKLFSEL-----KVY------------D----------TILLNTMITVYSSCGRI 319 (686)
Q Consensus 271 ~~~~~---~~l~~~~~~~g~~~~-A~~~~~~~-----~~~------------~----------~~~~~~li~~~~~~g~~ 319 (686)
+...| ..++.+....-..+. ....-..+ ..| | ..-...+.++..+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 11000 011111111000000 00000000 000 0 11244567777788888
Q ss_pred HHHHHHHhhCCCC--CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC--C----HHHHHHHHHHHHccCChHHHHHH
Q 005642 320 EDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM--D----KFSLASVISACANISSLELGEQV 391 (686)
Q Consensus 320 ~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~----~~t~~~ll~~~~~~~~~~~a~~~ 391 (686)
+.|.+.+....+- ++.-++....+|...|.+.++...-....+.|... + ...+..+..++.+.++++.+...
T Consensus 241 ~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 241 ETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 8888888776653 44456677778888888888777777666654221 1 11222334456667888999999
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 005642 392 FARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTI-ITFTAILSACDHCGLVKEGQKWFDAMKWQYHID 470 (686)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 470 (686)
|.+....--.|+...-..-+. +++...+...- +.|.. .-...-...+.+.|++..|+..|.++++ ..
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~E-------k~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk---r~ 388 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAE-------KALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK---RD 388 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHH-------HHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---cC
Confidence 988665443443222111111 22222222221 22222 1122225567889999999999999984 23
Q ss_pred C-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 005642 471 P-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547 (686)
Q Consensus 471 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 547 (686)
| |...|....-+|.+.|.+..|+.-.+.. ...|+ ...|..-..++....+++.|...|.+.++.+|++......+..
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 6 7899999999999999999999887776 35665 4557777777888889999999999999999988776666665
Q ss_pred HHhh
Q 005642 548 IFAT 551 (686)
Q Consensus 548 ~~~~ 551 (686)
....
T Consensus 469 c~~a 472 (539)
T KOG0548|consen 469 CVEA 472 (539)
T ss_pred HHHH
Confidence 5544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00012 Score=75.17 Aligned_cols=306 Identities=9% Similarity=-0.061 Sum_probs=175.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCcCHHHH-HHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHH
Q 005642 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTL-ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 279 (686)
...|..+...+...|+.+++...+.+..+.. ..++.... ......+...|+++.+.+++++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 4456667777777777777766666655432 11222211 122233456677777777777777653 223333321 2
Q ss_pred HHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC---chhHHHHHHHHHhCCChhhHHHH
Q 005642 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDL 356 (686)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 356 (686)
..+...|+.. +..+.+.+.+......+ ......+...+...|++++|...
T Consensus 84 ~~~~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 136 (355)
T cd05804 84 LGAFGLGDFS---------------------------GMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEA 136 (355)
T ss_pred HHHHHhcccc---------------------------cCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2222222221 22222223332322222 23444556678889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCC
Q 005642 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPT 436 (686)
Q Consensus 357 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~ 436 (686)
+++..+.. +.+...+..+...+...|++++|...+....+.... .|+
T Consensus 137 ~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--------------------------------~~~ 183 (355)
T cd05804 137 ARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--------------------------------SSM 183 (355)
T ss_pred HHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--------------------------------Ccc
Confidence 99998863 334556677888888999999999888876654211 112
Q ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHH-H--HHHHHHHhcCChHHHHHH--H-HhC-CCCCC---
Q 005642 437 --IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY-S--CMVDLFARAGCLNEAVNL--I-EQM-PFEAD--- 504 (686)
Q Consensus 437 --~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p~--- 504 (686)
...|..+...+...|++++|..++++........+..... . .+..-+...|....+.+. + ... ...|.
T Consensus 184 ~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~ 263 (355)
T cd05804 184 LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGL 263 (355)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccc
Confidence 2345567777888899999999999875221111111111 1 233333444433333222 1 111 11011
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccC-C--------CCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELD-P--------ENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 505 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.........++...|+.+.|...++.+.... . .........+.++...|++++|.+.+....+.+
T Consensus 264 ~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 264 AFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1222356667788899999999988876622 1 123445667778889999999999998887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=8e-07 Score=81.40 Aligned_cols=119 Identities=9% Similarity=0.150 Sum_probs=102.0
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hh
Q 005642 449 HCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGC-VAHGD--KG 522 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~-~~~g~--~~ 522 (686)
..++.+++...++...+ ..| +...|..++..|...|++++|...|++. ...| +...+..+..++ ...|+ .+
T Consensus 51 ~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 51 SQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred CchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 36677788888887762 345 7899999999999999999999999988 4566 577788888864 67777 59
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 523 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
+|.++++++++.+|+++.++..++..+.+.|++++|...++++.+...
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999987644
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-06 Score=74.69 Aligned_cols=107 Identities=13% Similarity=-0.006 Sum_probs=71.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCV 516 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~ 516 (686)
+..+...+...|++++|...|+... ...| +...+..+..++.+.|++++|...|++. ...| +...+..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4445556667777777777777766 2344 5666777777777777777777777766 3334 4566666677777
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
..|+.++|+..++++++..|+++..+...+.+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 777777777777777777777766665555544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.4e-06 Score=88.14 Aligned_cols=217 Identities=12% Similarity=0.069 Sum_probs=163.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 005642 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385 (686)
Q Consensus 306 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 385 (686)
-..+...+.+.|-...|..+|++. ..|...|.+|...|+..+|..+..+-.+ -+||...|..+.+.....--+
T Consensus 401 q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHH
Confidence 345556666777777777777753 4678888888888988888888877776 467777777776655444445
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005642 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465 (686)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (686)
++|.++.++.-. ..-..+.....+.++++++.+.|+.-.
T Consensus 474 EkawElsn~~sa----------------------------------------rA~r~~~~~~~~~~~fs~~~~hle~sl- 512 (777)
T KOG1128|consen 474 EKAWELSNYISA----------------------------------------RAQRSLALLILSNKDFSEADKHLERSL- 512 (777)
T ss_pred HHHHHHhhhhhH----------------------------------------HHHHhhccccccchhHHHHHHHHHHHh-
Confidence 555555443211 111112222334688999999998866
Q ss_pred hcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 005642 466 QYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542 (686)
Q Consensus 466 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 542 (686)
.+.| ...+|..+..+..+.++++.|.+.|... ...|| ...|+++-.+|.+.|+..+|...++++++.+-++..+|
T Consensus 513 --~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iW 590 (777)
T KOG1128|consen 513 --EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIW 590 (777)
T ss_pred --hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeee
Confidence 4556 6889999999999999999999999887 47776 66799999999999999999999999999888888999
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHhcCCCC
Q 005642 543 IQLSSIFATSGEWEKSSLIRDIMREKHVGK 572 (686)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 572 (686)
.+...+..+-|.|++|.+.+..+.+.....
T Consensus 591 ENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 591 ENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred echhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999888654433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.5e-05 Score=78.80 Aligned_cols=234 Identities=11% Similarity=0.093 Sum_probs=157.8
Q ss_pred HHHhCCCHHHHHHHHhhCCCCCc---hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHH
Q 005642 312 VYSSCGRIEDAKHIFRTMPNKSL---ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD-KFSLASVISACANISSLEL 387 (686)
Q Consensus 312 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~ 387 (686)
-+.+.|++.+|.-.|+.....|+ ..|.-|......+++-..|+..+++..+. .|+ ...+..|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 34455666666666665555433 45666666666666666666666666653 343 3444455555666666666
Q ss_pred HHHHHHHHHHhCCC-------------------cchhHHHHHHHHHHhchhHHHHHHHHHH-HCCCCCCHHHHHHHHHHH
Q 005642 388 GEQVFARVTIIGLD-------------------SDQIISTSLVDFYCKCGYDALALFNEMR-NTGVKPTIITFTAILSAC 447 (686)
Q Consensus 388 a~~~~~~~~~~~~~-------------------~~~~~~~~li~~~~~~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~ 447 (686)
|...++.-++..++ ++..... ...++|-++. ..+.++|+.....|.-.|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~-----------~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLA-----------HIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHH-----------HHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 66666644332210 1111111 3344444444 445457888888888889
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLG 524 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A 524 (686)
--.|++++|...|+.+. .++| |...|+-|+..++...+.++|+..|+++ .++|. ++++..|.-.|...|.+++|
T Consensus 441 ~ls~efdraiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred hcchHHHHHHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 99999999999999988 5678 7889999999999999999999999998 58887 56677788899999999999
Q ss_pred HHHHHHHHccCCC-----C-----chhHHHHHHHHhhcCCcchHHHH
Q 005642 525 RKVAERMIELDPE-----N-----ACAYIQLSSIFATSGEWEKSSLI 561 (686)
Q Consensus 525 ~~~~~~~~~~~p~-----~-----~~~~~~l~~~~~~~g~~~~a~~~ 561 (686)
...+-.++.+.+. . ..+|.+|=.++.-.++.|-+.++
T Consensus 518 ~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 518 VKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 9999999986554 1 13566666666666666544443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-07 Score=57.57 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=30.2
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhccC
Q 005642 134 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 167 (686)
Q Consensus 134 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 167 (686)
.|+.||..+||+||.+|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999999884
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-06 Score=74.25 Aligned_cols=107 Identities=10% Similarity=-0.025 Sum_probs=92.3
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 005642 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535 (686)
Q Consensus 458 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 535 (686)
.++++.. .+.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4555554 34454 3556788899999999999999997 4555 67889999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 536 PENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 536 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
|+++.++..++.++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999888754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00044 Score=80.63 Aligned_cols=251 Identities=13% Similarity=0.025 Sum_probs=117.2
Q ss_pred HHHHhcCChHHHHHHHhccCC----CCh----hhHHHHHHHHHccCCHHHHHHHHhhcCC-------CC--hhhHHHHHH
Q 005642 148 NLYGKCGDFNSANQVLNMMKE----PDD----FCLSALISGYANCGKMNDARRVFDRTTD-------TS--SVMWNSMIS 210 (686)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~ 210 (686)
..+...|++++|...+++..+ .+. ...+.+...+...|++++|...+++... +. ..++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 334456666666666655432 111 1223344445566666666666654432 11 123344455
Q ss_pred HHHhcCChhHHHHHHHHHHHC----CCC--c-CHHHHHHHHHHHHccCChhhHHHHHHHHHHc----CCCchHHHHHHHH
Q 005642 211 GYISNNEDTEALLLFHKMRRN----GVL--E-DASTLASVLSACSSLGFLEHGKQVHGHACKV----GVIDDVIVASALL 279 (686)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~l~ 279 (686)
.+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 556666666666666554431 111 1 1122233334444556666666666555432 1111122333445
Q ss_pred HHHHhcCChhHHHHHHHhccc----C-CchhH-----HHHHHHHHhCCCHHHHHHHHhhCCCCCch-------hHHHHHH
Q 005642 280 DTYSKRGMPSDACKLFSELKV----Y-DTILL-----NTMITVYSSCGRIEDAKHIFRTMPNKSLI-------SWNSMIV 342 (686)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~~~~----~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~ 342 (686)
..+...|++++|...+.+... . ....+ ...+..+...|+.+.|...+.....+... .+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 555666666666666555431 0 00001 01113334456666666665554432110 1223444
Q ss_pred HHHhCCChhhHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 005642 343 GLSQNGSPIEALDLFCNMNKL----DLRMD-KFSLASVISACANISSLELGEQVFARVTII 398 (686)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 398 (686)
++...|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.++.+.
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555566666666666555432 11111 123344444555666666666666655543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.5e-05 Score=74.71 Aligned_cols=184 Identities=11% Similarity=0.005 Sum_probs=116.3
Q ss_pred CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHH
Q 005642 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK----FSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408 (686)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (686)
....+..++..+...|++++|...|+++... .|+. .++..+..++...|++++|...++.+++...
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-------- 101 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-------- 101 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--------
Confidence 4456667777777788888888888777663 3432 2445556666677777777766666654321
Q ss_pred HHHHHHHhchhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------CCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 005642 409 SLVDFYCKCGYDALALFNEMRNTGVKPTI-ITFTAILSACDHC--------GLVKEGQKWFDAMKWQYHIDPE-IEHYSC 478 (686)
Q Consensus 409 ~li~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~--------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 478 (686)
-.|.. .++..+..++... |+.++|.+.++.+.+. .|+ ...+..
T Consensus 102 ------------------------~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a 154 (235)
T TIGR03302 102 ------------------------NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDA 154 (235)
T ss_pred ------------------------CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHH
Confidence 01111 2344444455443 6777888888887732 343 222222
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHHHHhhcCCc
Q 005642 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN---ACAYIQLSSIFATSGEW 555 (686)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 555 (686)
+..... ..... ......+...+...|++++|...++++++..|++ +..+..++.++...|++
T Consensus 155 ~~~~~~----~~~~~-----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 155 KKRMDY----LRNRL-----------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred HHHHHH----HHHHH-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence 211111 00000 0111245667889999999999999999987764 46889999999999999
Q ss_pred chHHHHHHHHHhc
Q 005642 556 EKSSLIRDIMREK 568 (686)
Q Consensus 556 ~~a~~~~~~~~~~ 568 (686)
++|..+++.+...
T Consensus 220 ~~A~~~~~~l~~~ 232 (235)
T TIGR03302 220 DLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0031 Score=63.55 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=72.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-cchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 005642 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KN-DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 147 (686)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~ 147 (686)
|+.+|+.||.-+-.+ .++++.+.|+++.. |. ...|..-|..-... ++++..+.+|.+++..-+. ...|...+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~s--kdfe~VEkLF~RCLvkvLn--lDLW~lYl 93 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELAS--KDFESVEKLFSRCLVKVLN--LDLWKLYL 93 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhh--HhHHHHHH
Confidence 778888888876555 88888888888876 32 34566666665555 6788888888888776444 45555555
Q ss_pred HHHHh-cCChHHHHHH----HhccC-----C-CChhhHHHHHHH---------HHccCCHHHHHHHHhhcCC
Q 005642 148 NLYGK-CGDFNSANQV----LNMMK-----E-PDDFCLSALISG---------YANCGKMNDARRVFDRTTD 199 (686)
Q Consensus 148 ~~~~~-~g~~~~A~~~----~~~~~-----~-~~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~ 199 (686)
..-.+ .|+...++.. |+-.. + .....|+..+.- +....+++...+++.++..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 43332 2333332221 11111 1 222334444433 3455577777788877654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00013 Score=72.03 Aligned_cols=209 Identities=11% Similarity=0.040 Sum_probs=126.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 005642 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF-SLASVISACANIS-SLELGEQVFARVTIIGLDSDQIISTSLVDFY 414 (686)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 414 (686)
+..+-..+...++.++|+.+..++++. .|+.. +++.-..++...| ++++++..++.+.+... .+..+|+..-..+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHH
Confidence 333444455566777777777777663 44433 3333333344445 45677777776666542 2333444332223
Q ss_pred Hhchh----HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhc---
Q 005642 415 CKCGY----DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARA--- 486 (686)
Q Consensus 415 ~~~~~----~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--- 486 (686)
.+.+. +++.+++++.+...+ |..+|+....++.+.|+++++++.++++++ ..| +...|+....++.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~---~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLE---EDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HCCCchhHHHHHHHHHHhcccc
Confidence 33322 456667677765544 667777777777788888888888888873 234 566666666555544
Q ss_pred CCh----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc
Q 005642 487 GCL----NEAVNLIEQM-PFEA-DVGMWSSILRGCVAH----GDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552 (686)
Q Consensus 487 g~~----~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 552 (686)
|.. ++.+++..++ ...| +...|+.+...+... ++..+|...+.+..+.+|+++.++..|+.+|++.
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 222 3455555333 4555 456677777777663 3345677778887777888888888888888763
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.3e-07 Score=55.00 Aligned_cols=32 Identities=28% Similarity=0.632 Sum_probs=18.5
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 005642 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463 (686)
Q Consensus 432 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 463 (686)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.3e-05 Score=82.75 Aligned_cols=221 Identities=13% Similarity=0.099 Sum_probs=130.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHhhcCCC--------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHH
Q 005642 173 CLSALISGYANCGKMNDARRVFDRTTDT--------SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244 (686)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 244 (686)
.|-..+..+.+.++.++|++++++..+. -...|.+++..-..-|.-+...++|+++.+. .-....|..|.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLL 1537 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHH
Confidence 3444555555555555555555544321 1234555555555556556666666666553 11233455566
Q ss_pred HHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhccc--C---CchhHHHHHHHHHhCCCH
Q 005642 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV--Y---DTILLNTMITVYSSCGRI 319 (686)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~ 319 (686)
..|.+.+.+++|.++++.|.+. +.-...+|...++.+.++.+-+.|..++.+... | -.....-.+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6666666666666666666665 334555666666666666666666666665541 1 122334445555566666
Q ss_pred HHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHH
Q 005642 320 EDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK--FSLASVISACANISSLELGEQVFAR 394 (686)
Q Consensus 320 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~ 394 (686)
+.+..+|+..... -...|+..+..-.++|+.+.+..+|++....++.|-. ..|...+..=-..|+-+.++.+=.+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 7766666666542 3467888888888888888888888888888777654 4566666655565665555554444
Q ss_pred HH
Q 005642 395 VT 396 (686)
Q Consensus 395 ~~ 396 (686)
+.
T Consensus 1697 A~ 1698 (1710)
T KOG1070|consen 1697 AK 1698 (1710)
T ss_pred HH
Confidence 43
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00032 Score=64.12 Aligned_cols=118 Identities=9% Similarity=0.054 Sum_probs=86.8
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR----AGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHG 519 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g 519 (686)
.+.+..+.+-|.+.+++|.+ + .+-.+.+.|..++.+ .+.+.+|.-+|+++. ..|+..+.+-...++...|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc
Confidence 34566677888888888872 2 244555555555543 456888888898883 6788888888888888899
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH-HHHHHHh
Q 005642 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL-IRDIMRE 567 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~ 567 (686)
++++|..+++.+++.+|+++.+..+++-.-...|.-.++.. .+.+++.
T Consensus 222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999999888888888888777777777655544 5665554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-05 Score=69.07 Aligned_cols=100 Identities=17% Similarity=0.298 Sum_probs=77.2
Q ss_pred CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 005642 469 IDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545 (686)
Q Consensus 469 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 545 (686)
..| +......++..+...|++++|.+.|+.+ ...| +...|..+...+...|++++|...++++++..|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 445 4556667777778888888888888776 3334 566677777888888888888888888888888888888888
Q ss_pred HHHHhhcCCcchHHHHHHHHHhc
Q 005642 546 SSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
+.+|...|++++|.+.++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888877664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00014 Score=80.72 Aligned_cols=190 Identities=15% Similarity=0.097 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhccCC--------CChhhHHHHHHHHHccCCHHHHHHHHhhcCCC-C-hhhHHHHHH
Q 005642 141 VLGSSLVNLYGKCGDFNSANQVLNMMKE--------PDDFCLSALISGYANCGKMNDARRVFDRTTDT-S-SVMWNSMIS 210 (686)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~ 210 (686)
..|-..|..+...++.+.|+++++++.. --...|.++++.-..-|.-+...++|++..+- | -..|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3444444444444455555544444432 00123444444433444444444444444431 1 223444444
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCc-hHHHHHHHHHHHHhcCChh
Q 005642 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPS 289 (686)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~ 289 (686)
.|.+.+++++|.++|+.|.++ +.-....|...+..+.+.++-+.|..++.++++.=+.. ......-.+..-.+.|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 444445555555555554443 22333344444444444444444444444444431110 1223333344444445555
Q ss_pred HHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC
Q 005642 290 DACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331 (686)
Q Consensus 290 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 331 (686)
.+..+|+... +.-...|+..++.-.+.|+.+.++.+|++...
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 5444444443 11233444445444455555555555544433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0007 Score=61.94 Aligned_cols=238 Identities=10% Similarity=0.104 Sum_probs=145.8
Q ss_pred cCCcHHHHHHhccCCC--CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHH--HHHHHhcChhhHHHHHHHHH
Q 005642 54 CGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML--ISGFAKADLAALEYGKQIHS 129 (686)
Q Consensus 54 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l--l~~~~~~~~~~~~~a~~i~~ 129 (686)
.|.+..++..-..... .+...---+-++|...|.+...+. ++.......+.++ +..+...+...-+.-..+.+
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E 97 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKEGKATPLQAVRLLAEYLELESNKKSILASLYE 97 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---ccccccCChHHHHHHHHHHhhCcchhHHHHHHHHH
Confidence 3666666655444332 233333344556666665443322 2222111111111 12222222222333445556
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCC-hhhHHHH
Q 005642 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS-SVMWNSM 208 (686)
Q Consensus 130 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l 208 (686)
.+.......+......-...|++.|++++|++...... +......-...+.+..+++-|...+++|.+.| ..+.+.|
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQL 175 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQL 175 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 66655555555555555667889999999999988833 33344444556778889999999999998854 3455555
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 005642 209 ISGYIS----NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284 (686)
Q Consensus 209 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 284 (686)
..++.+ .++..+|.-+|++|-++ .+|+.-+.+....++...|++++|..+++..+.... .++.+...++.+-..
T Consensus 176 A~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 176 AQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALH 253 (299)
T ss_pred HHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHH
Confidence 555544 45688899999999765 688888888888888899999999999998888753 356666666666666
Q ss_pred cCChhHH-HHHHHhc
Q 005642 285 RGMPSDA-CKLFSEL 298 (686)
Q Consensus 285 ~g~~~~A-~~~~~~~ 298 (686)
.|...++ .+.+.++
T Consensus 254 ~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 254 LGKDAEVTERNLSQL 268 (299)
T ss_pred hCCChHHHHHHHHHH
Confidence 6665444 3444433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0063 Score=60.16 Aligned_cols=432 Identities=12% Similarity=0.078 Sum_probs=201.0
Q ss_pred HHhcCCcHHHHHHhccCCCC---C------hhhHHHHHHHHHhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhcChhh
Q 005642 51 YMRCGNPTDALLLFDEMPRR---N------CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAA 120 (686)
Q Consensus 51 ~~~~g~~~~A~~~~~~~~~~---~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~ 120 (686)
+-+++++.+|.++|.++-.. + .+.-+.++++|... +.+.....+....+ -....|..+..+...-..+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 45667788888887776531 2 12234556665433 34444444443333 22455666666554443456
Q ss_pred HHHHHHHHHHHHHc--CCC------------CChhHHHHHHHHHHhcCChHHHHHHHhccCC--------CChhhHHHHH
Q 005642 121 LEYGKQIHSHILVN--GLD------------FDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--------PDDFCLSALI 178 (686)
Q Consensus 121 ~~~a~~i~~~~~~~--g~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li 178 (686)
...|.+.+...... +.. +|...-+..+..+...|++.+++.+++++.+ .+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 66666666555443 211 2222334455555566666666666665542 3445555443
Q ss_pred HHHHccCCHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCcCHHHHHHHHHHHHcc-
Q 005642 179 SGYANCGKMNDARRVFDRTTDTS-SVMWNSMISGYISNNEDTEALLLFHKMRRN------GVLEDASTLASVLSACSSL- 250 (686)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~- 250 (686)
-.+++.=-++.-. ....| ..-|.-+|..|. ++|... .+.|....+..++....-.
T Consensus 175 lmlsrSYfLEl~e-----~~s~dl~pdyYemilfY~------------kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p 237 (549)
T PF07079_consen 175 LMLSRSYFLELKE-----SMSSDLYPDYYEMILFYL------------KKIHAFDQRPYEKFIPEEELFSTIMQHLFIVP 237 (549)
T ss_pred HHHhHHHHHHHHH-----hcccccChHHHHHHHHHH------------HHHHHHhhchHHhhCcHHHHHHHHHHHHHhCC
Confidence 3333211111000 00000 111222333322 222111 1334444444444333211
Q ss_pred -CChhhHHHHHHHHHHcCCCchHH-HHHHHHHHHHhcCChhHHHHHHHhcc--------cCCchhHHHHHHHHHhCCCHH
Q 005642 251 -GFLEHGKQVHGHACKVGVIDDVI-VASALLDTYSKRGMPSDACKLFSELK--------VYDTILLNTMITVYSSCGRIE 320 (686)
Q Consensus 251 -~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~ 320 (686)
....--.++++.-...-+.|+-. +...|..-+.+ +.+++..+.+.+. +.=..++..++....+.++..
T Consensus 238 ~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~ 315 (549)
T PF07079_consen 238 KERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTE 315 (549)
T ss_pred HhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 12222233333333333444433 23344444443 4444444444333 122345667777777777777
Q ss_pred HHHHHHhhCCC--CCch-------hHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHH-HHHHH---HHHHccC
Q 005642 321 DAKHIFRTMPN--KSLI-------SWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFS-LASVI---SACANIS 383 (686)
Q Consensus 321 ~A~~~~~~~~~--~~~~-------~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll---~~~~~~~ 383 (686)
.|.+.+.-+.. |+.. +-..+-...+. .-+..+-+.++....... .|..- ..-++ .-+-+.|
T Consensus 316 ~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~g 393 (549)
T PF07079_consen 316 EAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEIG 393 (549)
T ss_pred HHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhcC
Confidence 77776665443 2221 11112222221 112223344444444332 12211 11111 2223334
Q ss_pred C-hHHHHHHHHHHHHhCCCcchhHHHHHHHH----HHhchh-----HHHHHHHHHHHCCCCCCHH----HHHHHHH--HH
Q 005642 384 S-LELGEQVFARVTIIGLDSDQIISTSLVDF----YCKCGY-----DALALFNEMRNTGVKPTII----TFTAILS--AC 447 (686)
Q Consensus 384 ~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~----~~~~~~-----~A~~~~~~m~~~~~~p~~~----~~~~ll~--~~ 447 (686)
. -++|..+++.+.+-. +-|...-|..... |...-. +-+.+-+-..+.|++|-.+ .-|.|.. .+
T Consensus 394 ~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred CccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 3 677777777766532 2233322222221 111100 2222223334556665432 2333333 34
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 510 (686)
..+|++.++.-+-..+. .+.|++.+|..++-.+....++++|+..+.+++ |+..++++
T Consensus 473 ysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 56788888876666655 578888899888888888889999999998875 56655554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00011 Score=67.23 Aligned_cols=105 Identities=9% Similarity=0.123 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHHHH
Q 005642 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLF-ARAGC--LNEAVNLIEQM-PFEA-DVGMW 508 (686)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~ 508 (686)
.|...|..+...|...|++++|...|++.. .+.| +...+..+..++ ...|+ .++|.+++++. ...| +...+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al 147 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL 147 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence 378889999999999999999999999988 3556 788888888874 67777 59999999998 4556 57788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 005642 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 542 (686)
..+...+...|++++|+..++++++..|.+..-+
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 8899999999999999999999999888766533
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00033 Score=69.11 Aligned_cols=183 Identities=10% Similarity=0.041 Sum_probs=134.1
Q ss_pred HccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhch---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH--H
Q 005642 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV--K 454 (686)
Q Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--~ 454 (686)
...+..++|.....++++.. +-+..+|+.--..+...+ ++++..++++.+...+ +..+|+.-...+.+.|+. +
T Consensus 48 ~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 34567788999999888765 334445555555555555 2899999998877655 555677655555556653 6
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCh----hHH
Q 005642 455 EGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAH---GDK----GLG 524 (686)
Q Consensus 455 ~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~---g~~----~~A 524 (686)
+++.+++++. ...| +..+|.....++.+.|+++++++.++++ ...| +...|+.....+.+. |.. +.+
T Consensus 126 ~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 7888888887 3456 7889999999999999999999999998 3444 567787776666554 222 467
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHhh----cCCcchHHHHHHHHHh
Q 005642 525 RKVAERMIELDPENACAYIQLSSIFAT----SGEWEKSSLIRDIMRE 567 (686)
Q Consensus 525 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 567 (686)
+....++++.+|++..+|..+..++.. .++..+|.+.+.+..+
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 788889999999999999999999987 3456678887776554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.7e-05 Score=69.48 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=92.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 005642 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAH 518 (686)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~ 518 (686)
..+-..+...|+-+....+..... ...+.+......++....+.|++.+|...+++.. -++|...|+.+.-+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 445556666777777777766654 1223356666667788888888888888888772 445777888888888888
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 519 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
|+++.|...|.+++++.|.++.++.+++..|.-.|+++.|..++.....
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888888776654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00066 Score=74.84 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
.++.-+-..|....+++++..+++.+++.+|+|..+...++..|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 344445566667777778888888888888777777777777665
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.1e-05 Score=79.33 Aligned_cols=206 Identities=12% Similarity=0.042 Sum_probs=107.8
Q ss_pred HHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhH
Q 005642 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256 (686)
Q Consensus 177 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 256 (686)
+...+.+.|-...|..+|++ ...|.-+|.+|...|+..+|..+..+-.+ -+||+..|..+........-+++|
T Consensus 404 laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred HHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHH
Confidence 33445555555555555554 34555555666666655556555555544 245555555555554444444444
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC--
Q 005642 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-- 331 (686)
Q Consensus 257 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 331 (686)
.++.+..-. ..-..+.....+.++++++.+.|+.-. +....+|-.+..+..+.++++.|.+.|.....
T Consensus 477 wElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 477 WELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 444433221 111222222333455666666555433 22344555555566666666666666655543
Q ss_pred C-CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 332 K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 332 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
| +..+||++-.+|.+.++-.+|...+.+..+.+ .-+-..+...+....+.|.+++|.+.+..+.+
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 2 23466666666666666666666666666554 33333444444455566666666666665543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=9e-05 Score=67.69 Aligned_cols=126 Identities=10% Similarity=0.043 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
|.......+....+.|++.+|...+++.. ..-++|...|+.+.-+|.+.|+.++|..-|.+. .+.| ++...+++..
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgm 176 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAA--RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGM 176 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHh--ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence 55566678888999999999999999988 244558999999999999999999999999887 4555 5677889999
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHH
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 563 (686)
.+.-.||.+.|..++.......+.+..+-..++-+....|++++|..+..
T Consensus 177 s~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 177 SLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999999999999998888899999999999999999999999865
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0006 Score=67.97 Aligned_cols=219 Identities=12% Similarity=0.066 Sum_probs=124.6
Q ss_pred HHHHHHcCCCCCh--hHHHHHHHHHHhcCC--------------hHHHHHHHhccCC------CChhhHHHHHHHHHccC
Q 005642 128 HSHILVNGLDFDS--VLGSSLVNLYGKCGD--------------FNSANQVLNMMKE------PDDFCLSALISGYANCG 185 (686)
Q Consensus 128 ~~~~~~~g~~~~~--~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g 185 (686)
...+.+.|..|.. .++..+-..+...+. +.+++...+.++. |+...+...+.+.....
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~ 288 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEAL 288 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccc
Confidence 4455666766653 345555554422222 3344444455542 34444445555444333
Q ss_pred CHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 005642 186 KMNDARRVFDRTTD-TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 264 (686)
Q Consensus 186 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 264 (686)
.-..+..++.+..+ .....+.-....+...|++++|+..++.++.. .+-|..........+.+.++.++|.+.++.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal 367 (484)
T COG4783 289 PNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKAL 367 (484)
T ss_pred cccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 33333333333222 23344444445555677777777777777664 23344444445566777777777777777777
Q ss_pred HcCCCch-HHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHH
Q 005642 265 KVGVIDD-VIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340 (686)
Q Consensus 265 ~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 340 (686)
... |+ ....-.+..+|.+.|++.+|+..++... +.|+..|..|..+|...|+..++....
T Consensus 368 ~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-------------- 431 (484)
T COG4783 368 ALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-------------- 431 (484)
T ss_pred hcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH--------------
Confidence 753 33 5555667777777777777777777665 335666777777777776666554433
Q ss_pred HHHHHhCCChhhHHHHHHHHHHC
Q 005642 341 IVGLSQNGSPIEALDLFCNMNKL 363 (686)
Q Consensus 341 i~~~~~~g~~~~A~~~~~~m~~~ 363 (686)
...|...|+++.|...+....+.
T Consensus 432 AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 432 AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh
Confidence 23555666677666666666554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-05 Score=67.04 Aligned_cols=98 Identities=9% Similarity=0.058 Sum_probs=87.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
+.+..-.+...+...|++++|..+|+-+ ...| +..-|..|.-++...|++++|+..|.++..++|+++.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4566667777888999999999999988 4666 5677899999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhcC
Q 005642 550 ATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~~ 569 (686)
...|+.+.|++.|+......
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999888653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.3e-05 Score=80.56 Aligned_cols=133 Identities=13% Similarity=0.071 Sum_probs=116.7
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHH
Q 005642 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWS 509 (686)
Q Consensus 433 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~ 509 (686)
...+...+..|.....+.|.+++|..+++... .+.| +......++.++.+.+++++|...+++. ...|+ .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 34467888899999999999999999999988 4678 4778888999999999999999999988 46675 55677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 510 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.+..++.+.|++++|..+|++++..+|+++.++..++.++...|+.++|...|++..+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 78888999999999999999999989999999999999999999999999999888653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0002 Score=68.48 Aligned_cols=181 Identities=10% Similarity=-0.014 Sum_probs=108.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-H---HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchH--HHH
Q 005642 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-A---STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV--IVA 275 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~ 275 (686)
...+..+...+...|++++|...|++.... .|+ . .++..+..++...|+++.|...++.+++....... .++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 445666666677777777777777776653 232 1 34555666667777777777777777665321111 134
Q ss_pred HHHHHHHHhc--------CChhHHHHHHHhccc--CCc-hhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHH
Q 005642 276 SALLDTYSKR--------GMPSDACKLFSELKV--YDT-ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 344 (686)
Q Consensus 276 ~~l~~~~~~~--------g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 344 (686)
..+..++... |++++|.+.|+.+.. |+. ..+..+..... ..... ......+...+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~~----------~~~~~~~a~~~ 176 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNRL----------AGKELYVARFY 176 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHHH----------HHHHHHHHHHH
Confidence 4444555443 678888888887762 222 22222211100 00000 01122456678
Q ss_pred HhCCChhhHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 005642 345 SQNGSPIEALDLFCNMNKLDL--RMDKFSLASVISACANISSLELGEQVFARVTII 398 (686)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 398 (686)
.+.|++++|+..++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 177 LKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888999999999988876521 123467778888888999999988888776654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00027 Score=64.08 Aligned_cols=185 Identities=14% Similarity=0.163 Sum_probs=119.8
Q ss_pred CChhhHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHH
Q 005642 348 GSPIEALDLFCNMNK---LD-LRMDKFS-LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDAL 422 (686)
Q Consensus 348 g~~~~A~~~~~~m~~---~g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~ 422 (686)
.+.++.++++.++.. .| ..|+..+ |..++-+....|+.+.|...++.+.+.- +.
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~-------------------- 84 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PG-------------------- 84 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CC--------------------
Confidence 456666666666652 23 4555544 3355556667777777777777766543 11
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC--
Q 005642 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-- 499 (686)
Q Consensus 423 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 499 (686)
+..+-..-..-+-..|++++|+++++.+.++ +| |..++---+.+.-..|+.-+|++-+.+.
T Consensus 85 -------------S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 85 -------------SKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred -------------ChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1111111111234467788888888887732 34 5666666666666777777777766665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC---CcchHHHHHHHHHhcC
Q 005642 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG---EWEKSSLIRDIMREKH 569 (686)
Q Consensus 500 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 569 (686)
.+..|...|.-+...|...|++++|...+++++=..|-++..+..++.++...| +++-+++++.+..+..
T Consensus 149 ~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 149 KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 355678888888888888888888888888888888888777777887776654 5666677777666543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.03 Score=60.33 Aligned_cols=91 Identities=10% Similarity=0.203 Sum_probs=52.2
Q ss_pred HHHHHHHHHhccCCHH---HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHHHH
Q 005642 439 TFTAILSACDHCGLVK---EGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSI 511 (686)
Q Consensus 439 ~~~~ll~~~~~~g~~~---~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l 511 (686)
+.+.|+..|.+.++.. +|+-+++.-. ...| |..+--.++.+|+-.|-+..|.++|+.+. +.-|...|. +
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~gl---t~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~ 513 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGL---TKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-I 513 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHh---hcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-H
Confidence 3456667777777665 3444444433 2233 55555667788888888888888888874 222322221 2
Q ss_pred HHHHHhcCChhHHHHHHHHHHc
Q 005642 512 LRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~ 533 (686)
...+...|++..+...+.....
T Consensus 514 ~~~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 514 FRRAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HHHHHhcccchhHHHHHHHHHH
Confidence 2334455666666666555555
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.6e-05 Score=74.66 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGC 515 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~ 515 (686)
....+|+..+...++++.|.++|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556677778889999999999999832 355 4456888888889999999999887 3344 667777777889
Q ss_pred HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHH
Q 005642 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (686)
...++++.|+.+++++.+..|++..+|..|+.+|...|+++.|...+..+
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999988743
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00014 Score=62.53 Aligned_cols=101 Identities=17% Similarity=0.131 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
......+...+...|++++|.+.++.+.. ..| +...+..+...+.+.|++++|...+++. ...| +...+..+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 93 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 35566677788899999999999999873 234 7889999999999999999999999987 3445 5777888889
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
.+...|+.++|...++++++..|++..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhccccch
Confidence 999999999999999999999998765
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.6e-05 Score=70.41 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=91.1
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKG 522 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~ 522 (686)
-..+.+++++|+..|.+.+ .+.| |...|..-..+|.+.|.++.|++-.+.. .+.|. ...|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3567899999999999998 5777 7888888999999999999999998887 46775 678999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcc
Q 005642 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556 (686)
Q Consensus 523 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 556 (686)
+|++.|+++++++|++......|-.+-.+.+...
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876666666555555444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.2e-05 Score=50.17 Aligned_cols=34 Identities=35% Similarity=0.555 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 236 (686)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.04 Score=59.42 Aligned_cols=402 Identities=11% Similarity=0.071 Sum_probs=193.3
Q ss_pred hcCChHHHHHHHhccCC--CChhhHHHHHHH--HHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHH
Q 005642 152 KCGDFNSANQVLNMMKE--PDDFCLSALISG--YANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLL 224 (686)
Q Consensus 152 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 224 (686)
..+++..|.+..++..+ |+ ..|...+.+ +.+.|+.++|..+++.... .|..+...+-.+|.+.++.++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 45777778777777664 44 344445554 3577888888777765432 3566777777777778888888888
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC-Ch---------hHHHHH
Q 005642 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-MP---------SDACKL 294 (686)
Q Consensus 225 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~---------~~A~~~ 294 (686)
|++.... -|+..-...+..++.+.+++.+-.+.--++.+. ++-+...+=+++..+...- .. .-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 8777663 566666677777777777766555444444442 3334444333444333221 11 123333
Q ss_pred HHhcccCC--ch---hHHHHHHHHHhCCCHHHHHHHHhh-----CCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 005642 295 FSELKVYD--TI---LLNTMITVYSSCGRIEDAKHIFRT-----MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364 (686)
Q Consensus 295 ~~~~~~~~--~~---~~~~li~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (686)
++.+.+.+ .. -...-...+...|++++|++++.. ...-+...-+.-+..+...+++.+..++-.++...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 33333222 00 011112334445556666655521 111222333344445555566666555555555543
Q ss_pred CCCCHHHHHHHHHHHH----cc------------CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc---hh--H-HH
Q 005642 365 LRMDKFSLASVISACA----NI------------SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---GY--D-AL 422 (686)
Q Consensus 365 ~~p~~~t~~~ll~~~~----~~------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~--~-A~ 422 (686)
+|. |...+.... .. +.++...+...+.+... ....|-+=+..+.+. |+ + ..
T Consensus 257 --~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 257 --NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred --Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHH
Confidence 221 222111110 00 00011111111100000 000111111111110 11 0 00
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChh-------HHHHHHHHHHhcCC-----hH
Q 005642 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE-------HYSCMVDLFARAGC-----LN 490 (686)
Q Consensus 423 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~-----~~ 490 (686)
..|+ +-|-+| .+..=+..|...=..+.-..++.... ...++.. -+.+.+......|. -+
T Consensus 330 ~y~~---kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad 400 (932)
T KOG2053|consen 330 YYFK---KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPAD 400 (932)
T ss_pred HHHH---HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChH
Confidence 0111 111111 11111222222223333344444333 1222211 12233333333342 22
Q ss_pred HHHHHHHhC------C------CCCC---------HHHHHHHHHHHHhcCCh---hHHHHHHHHHHccCCCCchhHHHHH
Q 005642 491 EAVNLIEQM------P------FEAD---------VGMWSSILRGCVAHGDK---GLGRKVAERMIELDPENACAYIQLS 546 (686)
Q Consensus 491 ~A~~~~~~~------~------~~p~---------~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~ 546 (686)
.-..++++. + .-|+ .-+-+.|++.|++.++. -+|+-+++.-+...|.|...-..++
T Consensus 401 ~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLi 480 (932)
T KOG2053|consen 401 SILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHH
Confidence 233333322 1 1122 12356788889988874 4677788888889999999889999
Q ss_pred HHHhhcCCcchHHHHHHHHHhcCCCCC
Q 005642 547 SIFATSGEWEKSSLIRDIMREKHVGKL 573 (686)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 573 (686)
.+|+-.|-+..|.+.++.+--+.++.+
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 999999999999999998876666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0016 Score=71.15 Aligned_cols=142 Identities=11% Similarity=-0.024 Sum_probs=108.2
Q ss_pred CCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccC---CchhHHHH
Q 005642 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY---DTILLNTM 309 (686)
Q Consensus 233 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 309 (686)
...+...+..|..+..+.|.+++|..+++.+.+.. +.+......++..+.+.+++++|...+++.... +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 45567788888888888888888888888888853 335556777888888888888888888887732 44567777
Q ss_pred HHHHHhCCCHHHHHHHHhhCCCCC---chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 005642 310 ITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376 (686)
Q Consensus 310 i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 376 (686)
..++.+.|++++|..+|+++..++ ..++..+...+...|+.++|...|++..+. ..|....|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 888888888888888888887543 467777888888888888888888888765 445555555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.027 Score=57.11 Aligned_cols=425 Identities=11% Similarity=0.060 Sum_probs=235.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhhcCC--CChhhHHHHHHH
Q 005642 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISG 211 (686)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 211 (686)
+-|+..|+.|+.-+... .++++++.++++.. | ....|...|..-.+..+++..+.+|.+... -+...|..-+.-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 55889999999877655 89999999999985 3 345788889999999999999999987654 467777776653
Q ss_pred HHh-cCChhH----HHHHHHHH-HHCCCCcCHH-HHHHHHHHH---------HccCChhhHHHHHHHHHHcCCCchHHHH
Q 005642 212 YIS-NNEDTE----ALLLFHKM-RRNGVLEDAS-TLASVLSAC---------SSLGFLEHGKQVHGHACKVGVIDDVIVA 275 (686)
Q Consensus 212 ~~~-~g~~~~----A~~~~~~m-~~~g~~p~~~-~~~~ll~~~---------~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 275 (686)
-.+ +|+... ..+.|+-. .+.|+.+-+. .|..-+..+ ....+++..+++|.+++...+..=...|
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 322 233332 23334333 3345555333 344444332 2334567777888888775433223344
Q ss_pred HHHHHHH-------------HhcCChhHHHHHHHhcc------cCC---------------chhHHHHHHHHHhCCCH--
Q 005642 276 SALLDTY-------------SKRGMPSDACKLFSELK------VYD---------------TILLNTMITVYSSCGRI-- 319 (686)
Q Consensus 276 ~~l~~~~-------------~~~g~~~~A~~~~~~~~------~~~---------------~~~~~~li~~~~~~g~~-- 319 (686)
+-....= -+...+..|.++++++. ... ...|-.+|.--...+--
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 4321100 01122444555555543 000 00122222211111100
Q ss_pred ------HHHHHHHhhCCC---CCchhHHHH-------HHHHHhCCC-------hhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 005642 320 ------EDAKHIFRTMPN---KSLISWNSM-------IVGLSQNGS-------PIEALDLFCNMNKLDLRMDKFSLASVI 376 (686)
Q Consensus 320 ------~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll 376 (686)
....=.+++... -.+..|.-- -..+...|+ .+++..+++.....-..-+..+|..+.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 001111100 011222222 334445555444332222333333333
Q ss_pred HHHHcc---CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 005642 377 SACANI---SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKP-TIITFTAILSACDHC 450 (686)
Q Consensus 377 ~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~ 450 (686)
..-... ...+....+++++...-...-.-+|-.++..-.+..- .|..+|.+..+.+..+ +....++++..++ .
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-s 414 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-S 414 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-c
Confidence 221111 1245555566655543322223345555555444433 7888999999888777 6677788887666 4
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHH
Q 005642 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEAD--VGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 451 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~li~~~~~~g~~~~A~ 525 (686)
++.+-|.++|+.-.+.+| -++.--...++.+.+.++-..|..+|++.. +.|+ ...|..++.--..-|+...+.
T Consensus 415 kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 778899999998775443 345555677888889999999999999883 3443 577999999888999999998
Q ss_pred HHHHHHHccCCCC----chhHHHHHHHHhhcCCcchHHHHHHHH
Q 005642 526 KVAERMIELDPEN----ACAYIQLSSIFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 526 ~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (686)
++-++....-|.+ ...-..+.+.|.-.+.+.--..-++.+
T Consensus 493 ~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 493 KLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 8888888766621 122344556666666665544444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0013 Score=72.70 Aligned_cols=218 Identities=12% Similarity=0.052 Sum_probs=143.1
Q ss_pred cCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhccCC--CChh-hHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHH
Q 005642 134 NGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDF-CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 209 (686)
Q Consensus 134 ~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 209 (686)
..+.| +...+..|+..|...+++++|.++.+...+ |+.. .|-.+...+.+.++.+++..+ .++
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l 90 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLI 90 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhh
Confidence 34555 456788999999899999999999986664 4433 333333456667776655443 444
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh
Q 005642 210 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289 (686)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 289 (686)
.......++.-...+.+.|.. ..-+...+..+..+|.+.|+.+++..+|+++++.. +.|+.+.|.+...|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 445555556444444445544 33455577778888888888888888888888876 55777888888888888 888
Q ss_pred HHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc-----------------------hhHHHHHHHHHh
Q 005642 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL-----------------------ISWNSMIVGLSQ 346 (686)
Q Consensus 290 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------------------~~~~~li~~~~~ 346 (686)
+|..++.+. +..+...+++..+.+++.++..-++ .++-.+-..|-.
T Consensus 167 KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~ 235 (906)
T PRK14720 167 KAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA 235 (906)
T ss_pred HHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh
Confidence 888877754 3335555566666666666554222 334444456667
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005642 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 380 (686)
.+++++++.+++.+.+.. +-|..+..-++.+|.
T Consensus 236 ~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 236 LEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 778888888888887752 234556666666665
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00027 Score=71.17 Aligned_cols=124 Identities=14% Similarity=0.129 Sum_probs=94.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCh
Q 005642 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 253 (686)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 253 (686)
-..++..+...++++.|..+|+++.+.++.....++..+...++..+|++++++.++. .+-+...+..-...+.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCH
Confidence 3345556667788888888888888777777777888888888888888888888864 344555666666677788888
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 254 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 254 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
+.|..+.+++++.. +.+..+|..|..+|.+.|+++.|...++.++
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888853 3345588888888888888888888887665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00034 Score=60.79 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH----HHHHHH
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEADV----GMWSSI 511 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l 511 (686)
..|..++..+ ..++...+...++.+.+..+-.| .......+...+...|++++|...|+... ..|+. .....+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 37788888888888875433322 23455567778888899999998888873 22443 234456
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHH
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (686)
...+...|++++|+..++... ..+-.+..+...+.+|...|++++|+..|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777888899999988886633 23335567788888999999999999888753
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00016 Score=71.85 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=101.1
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGL 523 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~ 523 (686)
.+...|++++|+..++.+.+ ..+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-++..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 45567899999999999873 33347788888899999999999999999988 46676 5667788899999999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 524 GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 524 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
|+..+++....+|+++..|..|+.+|...|+..++.....+..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888776554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.3e-05 Score=57.24 Aligned_cols=65 Identities=25% Similarity=0.328 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC-CcchHHHHHHHHHhc
Q 005642 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG-EWEKSSLIRDIMREK 568 (686)
Q Consensus 504 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 568 (686)
++..|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46778899999999999999999999999999999999999999999999 799999999987763
|
... |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.5e-05 Score=48.27 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 235 (686)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578899999999999999999999999888877
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.8e-05 Score=48.45 Aligned_cols=34 Identities=35% Similarity=0.583 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 368 (686)
.+|+.++.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=6e-05 Score=70.23 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=82.3
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcch
Q 005642 480 VDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557 (686)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 557 (686)
+.-+.+.+++++|+..|.+. .+.| |.+.|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34567889999999999988 5776 677788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCc
Q 005642 558 SSLIRDIMREKHVGKLPGC 576 (686)
Q Consensus 558 a~~~~~~~~~~~~~~~~~~ 576 (686)
|++.|++.. ..+|.+
T Consensus 168 A~~aykKaL----eldP~N 182 (304)
T KOG0553|consen 168 AIEAYKKAL----ELDPDN 182 (304)
T ss_pred HHHHHHhhh----ccCCCc
Confidence 999999554 466665
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00022 Score=59.57 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHH
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQMP-FEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN---ACAYIQLSS 547 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 547 (686)
+..++..+.+.|++++|.+.|+.+. ..|+ ...+..+...+.+.|+++.|...++++....|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3344444445555555555554441 1121 2233445555555555555555555555555442 234555555
Q ss_pred HHhhcCCcchHHHHHHHHHhc
Q 005642 548 IFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~ 568 (686)
++.+.|++++|.+.++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00016 Score=57.26 Aligned_cols=92 Identities=21% Similarity=0.311 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 553 (686)
+..++..+...|++++|...+++. ...| +...+..+...+...|++++|...+++.....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666677778888888877776 3334 34566677777778888888888888888888877777888888888888
Q ss_pred CcchHHHHHHHHHh
Q 005642 554 EWEKSSLIRDIMRE 567 (686)
Q Consensus 554 ~~~~a~~~~~~~~~ 567 (686)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888876654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0058 Score=55.72 Aligned_cols=181 Identities=12% Similarity=0.099 Sum_probs=107.6
Q ss_pred CChhHHHHHHHHHHH---CC-CCcCHHH-HHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhH
Q 005642 216 NEDTEALLLFHKMRR---NG-VLEDAST-LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290 (686)
Q Consensus 216 g~~~~A~~~~~~m~~---~g-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 290 (686)
.+.++.++++.+++. .| ..|+..+ |-.++-+....|+.+.|...+..+... ++-+..+...-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 455666666666643 23 4555553 334555555667777777777776665 34444444444444555677777
Q ss_pred HHHHHHhcccC---CchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 005642 291 ACKLFSELKVY---DTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364 (686)
Q Consensus 291 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (686)
|+++++.+... |.+++-.-+.+....|+--+|++-+....+ .|...|.-+...|...|++++|.-.++++.-.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~- 183 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI- 183 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-
Confidence 77777776633 334455455555556666666665555544 46777777888888888888888777777763
Q ss_pred CCCCHH-HHHHHHHHHHcc---CChHHHHHHHHHHHHhC
Q 005642 365 LRMDKF-SLASVISACANI---SSLELGEQVFARVTIIG 399 (686)
Q Consensus 365 ~~p~~~-t~~~ll~~~~~~---~~~~~a~~~~~~~~~~~ 399 (686)
.|... -+..+...+.-. .+++.+.++|+..++..
T Consensus 184 -~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 -QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred -CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 44333 333444443332 35566677777666654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.8e-05 Score=55.12 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=52.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 511 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
+...+...|++++|+..++++++..|+++.++..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678889999999999999999999999999999999999999999999999887654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00045 Score=57.71 Aligned_cols=105 Identities=11% Similarity=0.057 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHH
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD----VGMWSSI 511 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l 511 (686)
.++..+...+...|++++|.+.|+.+.....-.| ....+..++.++.+.|++++|...|+.+. ..|+ ...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3456677788899999999999999984322112 24577789999999999999999999873 3343 4567888
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPENACAY 542 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 542 (686)
..++...|+.++|...++++++..|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8889999999999999999999999876543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00026 Score=66.52 Aligned_cols=109 Identities=13% Similarity=0.181 Sum_probs=92.5
Q ss_pred CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHHHccCCCCchhH
Q 005642 469 IDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHG---DKGLGRKVAERMIELDPENACAY 542 (686)
Q Consensus 469 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~ 542 (686)
-.| |.+.|..|..+|...|+...|...|.+. ++.| ++..+..+..++..+. ...++..++++++..+|.+..+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 356 8999999999999999999999999988 4444 5777777777765433 46788999999999999999999
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCcc
Q 005642 543 IQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577 (686)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 577 (686)
..|+..+...|++.+|...++.|.+..+..+|..+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 99999999999999999999999997765555543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.002 Score=55.94 Aligned_cols=123 Identities=10% Similarity=0.142 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchH--HHHHHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLED---ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV--IVASAL 278 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l 278 (686)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......++. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3666777777777776642 222 122333445566677777777777777766532321 233445
Q ss_pred HHHHHhcCChhHHHHHHHhcccC--CchhHHHHHHHHHhCCCHHHHHHHHhh
Q 005642 279 LDTYSKRGMPSDACKLFSELKVY--DTILLNTMITVYSSCGRIEDAKHIFRT 328 (686)
Q Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 328 (686)
...+...|++++|...++....+ ....+.....+|.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666667777776666554322 222334444555555555555555543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.71 E-value=6.4e-05 Score=46.43 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 367 (686)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466777777777777777777777777766665
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.7e-05 Score=58.51 Aligned_cols=55 Identities=15% Similarity=0.232 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHH
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 563 (686)
+..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|+++++
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 33345555555555555555555 44444444444444555555555555555544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0004 Score=70.24 Aligned_cols=107 Identities=11% Similarity=0.046 Sum_probs=89.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005642 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHG 519 (686)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g 519 (686)
-...+...|++++|++.|+++++ ..| +...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34566788999999999999983 456 6788999999999999999999999988 4556 5677888999999999
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc
Q 005642 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATS 552 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 552 (686)
++++|+..+++++++.|+++.....+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988766665554333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00062 Score=61.22 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 547 (686)
...+..++..+...|++++|...|++.. ..|+ ...+..+...+...|++++|+..++++++..|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4556777777777888888888877662 2222 3567788888888999999999999999999988888888888
Q ss_pred HHhhcCC
Q 005642 548 IFATSGE 554 (686)
Q Consensus 548 ~~~~~g~ 554 (686)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0011 Score=67.02 Aligned_cols=95 Identities=11% Similarity=0.032 Sum_probs=72.3
Q ss_pred HHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChH
Q 005642 414 YCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLN 490 (686)
Q Consensus 414 ~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 490 (686)
+...|+ +|+..|++..+.... +...|..+..+|.+.|++++|+..++++. .+.| +...|..++.+|...|+++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHhCCHH
Confidence 334444 889999998876543 56778888888899999999999999887 3456 5778888889999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHH
Q 005642 491 EAVNLIEQM-PFEADVGMWSSIL 512 (686)
Q Consensus 491 ~A~~~~~~~-~~~p~~~~~~~li 512 (686)
+|...|++. ...|+.......+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999887 4666544444343
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00078 Score=60.34 Aligned_cols=94 Identities=17% Similarity=0.031 Sum_probs=76.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 546 (686)
....+..++..+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..++++++..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3566777888888899999999999887 23332 347888999999999999999999999999999888899999
Q ss_pred HHHh-------hcCCcchHHHHHHHH
Q 005642 547 SIFA-------TSGEWEKSSLIRDIM 565 (686)
Q Consensus 547 ~~~~-------~~g~~~~a~~~~~~~ 565 (686)
.++. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9998 788888666655543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00012 Score=44.05 Aligned_cols=31 Identities=45% Similarity=0.727 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGV 233 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 233 (686)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.017 Score=56.61 Aligned_cols=88 Identities=8% Similarity=0.070 Sum_probs=74.7
Q ss_pred HHHhcCChHHHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCc
Q 005642 482 LFARAGCLNEAVNLIEQM-PF-----EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEW 555 (686)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~-~~-----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 555 (686)
-..+.|.+.+|.+.|.+. .+ +|+...|.....+..+.|+.++|+.-.+++++++|....++..-+.++...++|
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999887 33 445666777777788999999999999999999999989999999999999999
Q ss_pred chHHHHHHHHHhcC
Q 005642 556 EKSSLIRDIMREKH 569 (686)
Q Consensus 556 ~~a~~~~~~~~~~~ 569 (686)
++|.+.+++..+..
T Consensus 338 e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999887643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.2 Score=52.52 Aligned_cols=229 Identities=11% Similarity=0.089 Sum_probs=151.3
Q ss_pred CCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHH
Q 005642 55 GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAALEYGKQIHSHILV 133 (686)
Q Consensus 55 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~ 133 (686)
=.+++|.++.+.- |.+..|..|.......-.++-|...|-+... +... + .+.-..++..-.+
T Consensus 677 vgledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik----~-----------vkrl~~i~s~~~q 739 (1189)
T KOG2041|consen 677 VGLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIK----L-----------VKRLRTIHSKEQQ 739 (1189)
T ss_pred hchHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchh----H-----------HHHhhhhhhHHHH
Confidence 3456666665544 5567799988888777788888888766543 2211 1 1111112221111
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCC-----ChhhHHHH
Q 005642 134 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT-----SSVMWNSM 208 (686)
Q Consensus 134 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l 208 (686)
.+=+.+ --|++++|++++-++.++| .-|..+.+.|++-...++++..... -..+|+.+
T Consensus 740 ----------~aei~~--~~g~feeaek~yld~drrD-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~i 802 (1189)
T KOG2041|consen 740 ----------RAEISA--FYGEFEEAEKLYLDADRRD-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNI 802 (1189)
T ss_pred ----------hHhHhh--hhcchhHhhhhhhccchhh-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHH
Confidence 111122 2389999999999888877 3467788899999999998875432 14689999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 005642 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288 (686)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 288 (686)
...++....|++|.+.|..-... ...+.++.+..++++-+.+-.. ++.+....-.+.+++.+.|.-
T Consensus 803 g~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC 868 (1189)
T KOG2041|consen 803 GETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMC 868 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchH
Confidence 99999999999999999764321 2345666666666554444333 455666677788999999999
Q ss_pred hHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchh
Q 005642 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336 (686)
Q Consensus 289 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 336 (686)
++|.+.|-+...|. .-+..|...+++.+|.++-++..-|.+.+
T Consensus 869 ~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~t 911 (1189)
T KOG2041|consen 869 DQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQT 911 (1189)
T ss_pred HHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 99988876554433 23456777788888888877776665544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.031 Score=54.77 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLR-----MDKF-SLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
.+..+...+.+.|++++|.++|++....-.. .+.. .|...+-++...|+...|...++....
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445566667777777777777766553221 1111 122233344555666666666665543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0047 Score=55.46 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-C-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-E-IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
..+..+...+...|++++|...|++..+. ...+ + ...+..++.++.+.|++++|...+++. ...| +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 45677777888889999999999988732 2222 2 467888889999999999999998887 3455 4555666777
Q ss_pred HHHhcCC--------------hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC
Q 005642 514 GCVAHGD--------------KGLGRKVAERMIELDPENACAYIQLSSIFATSG 553 (686)
Q Consensus 514 ~~~~~g~--------------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 553 (686)
.+...|+ +++|.+.++++++.+|++ +..++..+...|
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 7777666 466777777777777765 444444444444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00044 Score=53.51 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHH
Q 005642 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV-GMWSSILRGCVAHGDKGLGRKVA 528 (686)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 528 (686)
.|+++.|+.+++++.+.....|+...+..+..+|.+.|++++|..++++.+..|.. ...-.+..++.+.|++++|+.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 57889999999998854222234556666889999999999999999885444433 44445577788999999999988
Q ss_pred HHH
Q 005642 529 ERM 531 (686)
Q Consensus 529 ~~~ 531 (686)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 764
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00019 Score=52.97 Aligned_cols=53 Identities=15% Similarity=0.377 Sum_probs=44.7
Q ss_pred HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
...|++++|+..++++++..|++..++..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999888999999999999999999998866553
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.14 Score=49.95 Aligned_cols=289 Identities=13% Similarity=0.069 Sum_probs=182.3
Q ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH--hcCChHHHHHHHhccCC-CChhh--HHHHHH
Q 005642 105 SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG--KCGDFNSANQVLNMMKE-PDDFC--LSALIS 179 (686)
Q Consensus 105 ~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~-~~~~~--~~~li~ 179 (686)
.|.+|-.++...+.|+-..+.+.-....+. +..|....-.|+.+-. -.|+.++|.+-|+.|.. |.... ...|.-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyl 162 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYL 162 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence 455555555555556666666655443322 3445555555554433 35999999999999985 33221 222223
Q ss_pred HHHccCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCcCHH--HHHHHHHHHH---cc
Q 005642 180 GYANCGKMNDARRVFDRTTD--T-SSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDAS--TLASVLSACS---SL 250 (686)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~---~~ 250 (686)
.-.+.|+.+.|...-++.-. | -...+.+.+...+..|+|+.|+++++.-+... +.++.. .-..|+.+-. -.
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 33578888888888776543 2 35688899999999999999999998876543 344432 2223333322 12
Q ss_pred CChhhHHHHHHHHHHcCCCchHH-HHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHH----HHH
Q 005642 251 GFLEHGKQVHGHACKVGVIDDVI-VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA----KHI 325 (686)
Q Consensus 251 ~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~ 325 (686)
.+...|+..-.+..+. .|+.. .-..-..++.+.|++.++-.+++.+-+.++..--.++..+.+.|+.... .+-
T Consensus 243 adp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~ 320 (531)
T COG3898 243 ADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKK 320 (531)
T ss_pred CChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3456666666665553 44433 2234457788889998888888877655555544555566666664322 234
Q ss_pred HhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCChHHHHHHHHHHHHh
Q 005642 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA-NISSLELGEQVFARVTII 398 (686)
Q Consensus 326 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~ 398 (686)
++.|+..+..+.-.+..+-...|++..|..--+.... ..|....|..+.+.-. ..|+-.++...+.+.++.
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5566666777777777888888888877766665554 4677777777766654 448888887777776654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0037 Score=66.21 Aligned_cols=135 Identities=9% Similarity=0.107 Sum_probs=93.9
Q ss_pred CCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhc--------CChHHHHHHHH
Q 005642 432 GVKPTIITFTAILSACDHC-----GLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARA--------GCLNEAVNLIE 497 (686)
Q Consensus 432 ~~~p~~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 497 (686)
+.+.+...|...+.+.... +..+.|..+|++.. ...|+ ...+..+..++... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4455777777777764332 33668888888887 45674 45555544444321 12334444444
Q ss_pred hC---C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 498 QM---P-FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 498 ~~---~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
+. . ...+...|..+.-.....|++++|...++++++++| +...|..++.++...|+.++|.+.+++.....+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 42 1 223556777776667778999999999999999999 577899999999999999999999998876543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0068 Score=64.20 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 005642 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532 (686)
Q Consensus 454 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 532 (686)
..+.+..++.........++..|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444443311122335678888877777889999999999998 477888889999999999999999999999999
Q ss_pred ccCCCCch
Q 005642 533 ELDPENAC 540 (686)
Q Consensus 533 ~~~p~~~~ 540 (686)
.++|.++.
T Consensus 481 ~L~P~~pt 488 (517)
T PRK10153 481 NLRPGENT 488 (517)
T ss_pred hcCCCCch
Confidence 99998765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.003 Score=53.92 Aligned_cols=95 Identities=7% Similarity=-0.008 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRG 514 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~ 514 (686)
...-.+...+...|++++|..+|+.+. -+.| +..-|..|.-++...|++++|+..|.... +.| |+..+..+..+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 445556666788999999999999987 4667 67888999999999999999999999983 555 57788889999
Q ss_pred HHhcCChhHHHHHHHHHHccC
Q 005642 515 CVAHGDKGLGRKVAERMIELD 535 (686)
Q Consensus 515 ~~~~g~~~~A~~~~~~~~~~~ 535 (686)
+...|+.+.|++.|+.++..-
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999998844
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0021 Score=50.65 Aligned_cols=95 Identities=16% Similarity=0.259 Sum_probs=77.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCV 516 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~ 516 (686)
+..+...+...|++++|...++.+.+ ..| +...+..+...+...|++++|.+.++.. ...| +...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE---LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 45566677888999999999999873 334 4577888999999999999999999886 3334 4567888888999
Q ss_pred hcCChhHHHHHHHHHHccCCC
Q 005642 517 AHGDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~p~ 537 (686)
..|+.+.|...+.+..+..|+
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 KLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999887773
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00022 Score=42.87 Aligned_cols=29 Identities=34% Similarity=0.536 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 005642 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLD 364 (686)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (686)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00054 Score=51.34 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=51.4
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
..+.+.++++.|.+.++++++.+|+++..+...+.++...|++++|.+.++...+..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 5677889999999999999999999999999999999999999999999998887543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0033 Score=49.67 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=51.5
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 005642 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415 (686)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 415 (686)
-...|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+.++..--. ..+-.+|.
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~--~~ie~kl~------------------- 86 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS--EDIENKLT------------------- 86 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc--hhHHHHHH-------------------
Confidence 34455556666777777777777777777 677777777777665442111 00001111
Q ss_pred hchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005642 416 KCGYDALALFNEMRNTGVKPTIITFTAILSACD 448 (686)
Q Consensus 416 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 448 (686)
..+.++++|...+++|+..+|+.++..+.
T Consensus 87 ----~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 87 ----NLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred ----HHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 34556666666667777777777766543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.004 Score=53.80 Aligned_cols=130 Identities=14% Similarity=0.083 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---HHHH
Q 005642 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID-PEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD---VGMW 508 (686)
Q Consensus 434 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~ 508 (686)
.|....-..|..+....|+..+|...|++.. .|+- -|......+.++....+++.+|...++++. ..|+ +...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal--sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQAL--SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh--ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3444444455556666666666666666655 2332 255555556666666666666666665551 1121 1222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
-.+...+...|..+.|+..++.++...| .+......+..+.++|+.+++..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3344555566666666666666666555 33344455555556665555555443333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00096 Score=48.56 Aligned_cols=61 Identities=25% Similarity=0.337 Sum_probs=45.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 005642 479 MVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 539 (686)
+...+...|++++|.+.|+++ ...| +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455677788888888888877 3455 456677788888888888888888888888888763
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0087 Score=53.54 Aligned_cols=94 Identities=14% Similarity=-0.055 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHH
Q 005642 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE--DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 279 (686)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4456777777777888888888888876642222 12466677777778888888888888777653 22334455555
Q ss_pred HHHH-------hcCChhHHHHHHH
Q 005642 280 DTYS-------KRGMPSDACKLFS 296 (686)
Q Consensus 280 ~~~~-------~~g~~~~A~~~~~ 296 (686)
..+. +.|+++.|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555 5566665554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.015 Score=56.98 Aligned_cols=150 Identities=14% Similarity=0.234 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHcc-CCHHHHHHHHhhcCC-----CC----hhhHHHHHHHH
Q 005642 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC-GKMNDARRVFDRTTD-----TS----SVMWNSMISGY 212 (686)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~ 212 (686)
|...+..|...|++..|-+.+.. +...|... |++++|.+.|++..+ .. ...+..+...+
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 44445555555665555444433 33344444 566666666654322 01 23455666677
Q ss_pred HhcCChhHHHHHHHHHHHCCCC-----cCHH-HHHHHHHHHHccCChhhHHHHHHHHHHcC--CCc--hHHHHHHHHHHH
Q 005642 213 ISNNEDTEALLLFHKMRRNGVL-----EDAS-TLASVLSACSSLGFLEHGKQVHGHACKVG--VID--DVIVASALLDTY 282 (686)
Q Consensus 213 ~~~g~~~~A~~~~~~m~~~g~~-----p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~--~~~~~~~l~~~~ 282 (686)
.+.|++++|+++|++....-.. .+.. .|...+-++...||...|...++...... +.. .......|+.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 7777777777777776653221 1111 22222334445566666666666665432 211 223444455555
Q ss_pred Hhc--CChhHHHHHHHhcccCCc
Q 005642 283 SKR--GMPSDACKLFSELKVYDT 303 (686)
Q Consensus 283 ~~~--g~~~~A~~~~~~~~~~~~ 303 (686)
-.. ..++.+..-|+.+.+.|.
T Consensus 246 ~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS---H
T ss_pred HhCCHHHHHHHHHHHcccCccHH
Confidence 432 224444444554444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0039 Score=49.28 Aligned_cols=77 Identities=8% Similarity=0.114 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHhhCCC-----CCchhHHHHHHHHHhCC--------ChhhHHHHHHHHHHCCCCCCHHH
Q 005642 305 LLNTMITVYSSCGRIEDAKHIFRTMPN-----KSLISWNSMIVGLSQNG--------SPIEALDLFCNMNKLDLRMDKFS 371 (686)
Q Consensus 305 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~t 371 (686)
+....|..+...+++...-.+|+.+++ |++.+|+.++.+.++.. +....+.+|+.|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445667777788999999999998876 66789999999877643 23456778888888888888888
Q ss_pred HHHHHHHHHc
Q 005642 372 LASVISACAN 381 (686)
Q Consensus 372 ~~~ll~~~~~ 381 (686)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888876544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.014 Score=48.12 Aligned_cols=107 Identities=16% Similarity=0.097 Sum_probs=70.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC--chHHHHHHHHHHH
Q 005642 207 SMISGYISNNEDTEALLLFHKMRRNGVLED--ASTLASVLSACSSLGFLEHGKQVHGHACKVGVI--DDVIVASALLDTY 282 (686)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~ 282 (686)
.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++.....-.. .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345667778888999999998888876654 345666777788888899988888888775321 0223333445567
Q ss_pred HhcCChhHHHHHHHhcccCCchhHHHHHHHH
Q 005642 283 SKRGMPSDACKLFSELKVYDTILLNTMITVY 313 (686)
Q Consensus 283 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 313 (686)
...|+.++|...+-....++...|.--|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888877654444333444333333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00023 Score=43.53 Aligned_cols=33 Identities=33% Similarity=0.650 Sum_probs=30.8
Q ss_pred HHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 528 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
++++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.44 Score=50.14 Aligned_cols=202 Identities=11% Similarity=0.015 Sum_probs=110.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhccCC-CChhhHHHHHHH----------HHccCCHHHHHHHHhhcCCCChhhH
Q 005642 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALISG----------YANCGKMNDARRVFDRTTDTSSVMW 205 (686)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~----------~~~~g~~~~A~~~~~~~~~~~~~~~ 205 (686)
.|.+..|..|...-...-.++.|+..|-+... +.+..-..+-.. -.--|++++|+++|-.+.++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 56667777777666666667777777665553 222111111111 1123677777777776666553
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 005642 206 NSMISGYISNNEDTEALLLFHKMRRNGV--LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283 (686)
Q Consensus 206 ~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 283 (686)
.|..+.+.|++-...++++.-- .+. ..-..++..+...++....++.|.+.|..--.. ...+.+|.
T Consensus 766 --Aielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly 833 (1189)
T KOG2041|consen 766 --AIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLY 833 (1189)
T ss_pred --hHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHH
Confidence 2445556666666655554210 000 111345666666666666667766666542211 13455555
Q ss_pred hcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHH
Q 005642 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359 (686)
Q Consensus 284 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (686)
+..++++-+.+-..+ +.+....-.+..++.+.|.-++|.+.+-+-..|. +.+..|...++|.+|.++-+.
T Consensus 834 ~le~f~~LE~la~~L-pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 834 RLELFGELEVLARTL-PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHhhhhHHHHHHhc-CcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 555555544433332 3455556667777777777777777766655442 334455566666666665544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.015 Score=50.43 Aligned_cols=107 Identities=16% Similarity=0.238 Sum_probs=88.3
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--
Q 005642 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-- 537 (686)
Q Consensus 463 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-- 537 (686)
..++....|+...-..|..++.+.|++.||...|++.- ..-|....-.+.++....+++..|...++++.+.+|.
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 33344567888888889999999999999999998872 5557888888888888899999999999999998776
Q ss_pred CchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 538 NACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.+.....++.+|...|++++|+..++.....-
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 56678888999999999999999999777643
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.016 Score=56.58 Aligned_cols=284 Identities=11% Similarity=0.046 Sum_probs=148.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCC---cCHHHHHHHHHHHHccCChhhHHHHHHHHHH--c--CC-CchHHHHHHHHHH
Q 005642 210 SGYISNNEDTEALLLFHKMRRNGVL---EDASTLASVLSACSSLGFLEHGKQVHGHACK--V--GV-IDDVIVASALLDT 281 (686)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~--g~-~~~~~~~~~l~~~ 281 (686)
.-+++.|+....+.+|+..++-|.. .=+..|..|.++|.-.+++++|.+++..=+. . |- .........|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4577888888888888888886632 1233466666777777888888887643211 1 10 0111222334555
Q ss_pred HHhcCChhHHHHHHHhcc----c-----CCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC-CchhHHHHHHHHHhCCChh
Q 005642 282 YSKRGMPSDACKLFSELK----V-----YDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQNGSPI 351 (686)
Q Consensus 282 ~~~~g~~~~A~~~~~~~~----~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 351 (686)
+--.|.+++|.....+-. + ....++-.+...|...|+--.. ..| +...++.=+. ..++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~-------~~pee~g~f~~ev~-----~al~ 172 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL-------EAPEEKGAFNAEVT-----SALE 172 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC-------CChhhcccccHHHH-----HHHH
Confidence 555666766665443221 0 0122333444444443331100 000 0011111000 0122
Q ss_pred hHHHHHHHH----HHCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHH
Q 005642 352 EALDLFCNM----NKLDLR-MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFN 426 (686)
Q Consensus 352 ~A~~~~~~m----~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~ 426 (686)
.|.++|.+= .+.|-. .-...|..+...|.-.|+++.|+..++.-++. |.+.=+
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~i----------------------a~efGD 230 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEI----------------------AQEFGD 230 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHH----------------------HHHhhh
Confidence 333333321 111111 11235666667777788888888877643221 001111
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 005642 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW---QYHID-PEIEHYSCMVDLFARAGCLNEAVNLIEQMP-- 500 (686)
Q Consensus 427 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 500 (686)
+.. ....+..+..++.-.|+++.|.+.|+.... +.|-. ....+..+|...|.-..++++|+.++.+.-
T Consensus 231 rAa------eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 231 RAA------ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHH------HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 224566677777777888888887776431 11211 134455667777777778888888776541
Q ss_pred ------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 501 ------FEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 501 ------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
..-....+-+|..++...|..++|+...+..++
T Consensus 305 AqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 305 AQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 112345566778888888888888777766655
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.34 Score=47.88 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHH
Q 005642 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355 (686)
Q Consensus 276 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 355 (686)
+..+.-+...|+...|.++-.+..-||...|...+.+++..++|++-.++... +++|+.|..++.++.+.|+..+|..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 34455556677778888888888778888888888888888888877776543 5577888888888888888888877
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 005642 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391 (686)
Q Consensus 356 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 391 (686)
+..++ ++..-+..|.+.|++.+|.+.
T Consensus 259 yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 259 YIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 76652 123445566777777766554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0043 Score=53.24 Aligned_cols=100 Identities=10% Similarity=0.043 Sum_probs=78.6
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 005642 468 HIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544 (686)
Q Consensus 468 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 544 (686)
|++++ .+..-....-+-..|++++|..+|+-+- ..| +..-|..|..++...+++++|+..|..+..+.++++.++..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44442 3333344445567899999999998873 333 56667778888888899999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHh
Q 005642 545 LSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 545 l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.+..|...|+.+.|+..+....+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999987776
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.11 Score=49.49 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=39.4
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 005642 339 SMIVGLSQNGSPIEALDLFCNMNKL--DLRMDKFSLASVISACANISSLELGEQVFARV 395 (686)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 395 (686)
.+..-|.+.|.+..|+.-|+.+.+. +.+........+..++...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4455677888888888888888764 22333455667778888888888887766544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.36 Score=47.77 Aligned_cols=109 Identities=10% Similarity=0.056 Sum_probs=87.4
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCC
Q 005642 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318 (686)
Q Consensus 239 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 318 (686)
+.+..+.-|...|+...|.++-.+. . -|+...|-..+.+++..+++++-..+... ..++..|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCC
Confidence 4555667777888888888775554 2 37888999999999999999988886654 5578899999999999999
Q ss_pred HHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHH
Q 005642 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359 (686)
Q Consensus 319 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (686)
..+|..+..++. +..-+..|.+.|++.+|.+.-.+
T Consensus 253 ~~eA~~yI~k~~------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKIP------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhCC------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999843 36677888999999998766433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0077 Score=58.76 Aligned_cols=131 Identities=19% Similarity=0.183 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005642 405 IISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSA-CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481 (686)
Q Consensus 405 ~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 481 (686)
.+|..++....+.+. .|..+|.+..+.+. .+...|...... +...++.+.|..+|+...+. ...+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 356666766666655 77778888774432 123333333333 33346666788888887754 3346777778888
Q ss_pred HHHhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 482 LFARAGCLNEAVNLIEQMP-FEADV----GMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
.+.+.++.+.|..+|++.- .-|.. ..|...+.--.+.|+.+....+.+++.+..|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 8888888888888888762 22332 468888887778888888888888888877764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00098 Score=49.05 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=24.7
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 449 HCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
..|++++|+++|+++.. ..| +......++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ---RNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHH---HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555552 123 4455555555555555555555555555
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0016 Score=48.12 Aligned_cols=64 Identities=17% Similarity=0.308 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHccCC
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHG-DKGLGRKVAERMIELDP 536 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~p 536 (686)
...|..++..+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456666677777777777777777666 3444 3556777777777777 57777777777777766
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.43 Score=47.62 Aligned_cols=87 Identities=11% Similarity=0.185 Sum_probs=57.5
Q ss_pred HHhccCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc---chHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC
Q 005642 62 LLFDEMPR-R-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND---FSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136 (686)
Q Consensus 62 ~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~ 136 (686)
++=+++.+ | |+.+|-.||.-+..+|.+++..++|++|..|-. ..|..-+++-... +++...+.++.++++..+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~--~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELAR--KDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhh--hhHHHHHHHHHHHHhhhc
Confidence 44455553 3 677888888888888888888888888887543 3455445433322 678888888888887655
Q ss_pred CCChhHHHHHHHHHHh
Q 005642 137 DFDSVLGSSLVNLYGK 152 (686)
Q Consensus 137 ~~~~~~~~~l~~~~~~ 152 (686)
. ...|...+..-.+
T Consensus 108 ~--ldLW~lYl~YIRr 121 (660)
T COG5107 108 N--LDLWMLYLEYIRR 121 (660)
T ss_pred c--HhHHHHHHHHHHh
Confidence 4 4455555544333
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0093 Score=60.58 Aligned_cols=113 Identities=11% Similarity=0.143 Sum_probs=82.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 005642 173 CLSALISGYANCGKMNDARRVFDRTTDT------SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246 (686)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 246 (686)
....++..+....+++.+..++.+.... -..+..++|+.|.+.|..++++.+++.=...|+-||..+++.||..
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3444455555555666666666554331 2345668899999999999999999888888999999999999999
Q ss_pred HHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 005642 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285 (686)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 285 (686)
+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999888888877666666665555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.011 Score=48.76 Aligned_cols=85 Identities=14% Similarity=0.036 Sum_probs=49.0
Q ss_pred HHHHHHhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC---CchhHHHHHHHHh
Q 005642 479 MVDLFARAGCLNEAVNLIEQMP---FEAD--VGMWSSILRGCVAHGDKGLGRKVAERMIELDPE---NACAYIQLSSIFA 550 (686)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 550 (686)
+..++-..|+.++|+.+|++.. .... ...+-.+...+...|++++|..++++..+..|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3445555666666666666541 1111 233445556666667777777777766666565 4444555556666
Q ss_pred hcCCcchHHHHHH
Q 005642 551 TSGEWEKSSLIRD 563 (686)
Q Consensus 551 ~~g~~~~a~~~~~ 563 (686)
..|++++|.+.+-
T Consensus 87 ~~gr~~eAl~~~l 99 (120)
T PF12688_consen 87 NLGRPKEALEWLL 99 (120)
T ss_pred HCCCHHHHHHHHH
Confidence 6777777766543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.023 Score=55.48 Aligned_cols=126 Identities=11% Similarity=0.148 Sum_probs=64.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHhchh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005642 371 SLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKCGY-DALALFNEMRNTGVKPTIITFTAILSACD 448 (686)
Q Consensus 371 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~-~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 448 (686)
+|..++..+.+.+..+.|+.+|.++.+.+ ...++.+..++++.++.... .|..+|+...+. +..+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 34455555555555666666666655332 12333344444444433322 366666665543 3335555556666666
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 449 HCGLVKEGQKWFDAMKWQYHIDPE---IEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
+.|+.+.|..+|++... .+.++ ...|...++.=.+.|+.+.+.++.+++
T Consensus 82 ~~~d~~~aR~lfer~i~--~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 82 KLNDINNARALFERAIS--SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HTT-HHHHHHHHHHHCC--TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHH--hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666652 12221 235666666666666666666666555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0056 Score=58.58 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHH
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQMP-FEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN---ACAYIQLSS 547 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 547 (686)
|..-+..+.+.|++++|...|+... ..|+ ...+..+...+...|++++|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344455555555555541 2232 1234445555666666666666666666555543 334444455
Q ss_pred HHhhcCCcchHHHHHHHHHh
Q 005642 548 IFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~ 567 (686)
++...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666665554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.47 Score=46.53 Aligned_cols=287 Identities=18% Similarity=0.153 Sum_probs=164.8
Q ss_pred HccCChhhHHHHHHHHHHcCCCchHHHHHHHH--HHHHhcCChhHHHHHHHhccc-CCch--hHHHHHHHHHhCCCHHHH
Q 005642 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALL--DTYSKRGMPSDACKLFSELKV-YDTI--LLNTMITVYSSCGRIEDA 322 (686)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~li~~~~~~g~~~~A 322 (686)
...|+-..|.++-.+..+. +..|..-.-.|+ ++-.-.|++++|.+-|+.|.. |... -...|.-.-.+.|..+.|
T Consensus 95 agAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 95 AGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred hccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHH
Confidence 3567777777776655432 222333222222 233346888888888887762 2222 122333334556777777
Q ss_pred HHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHHH--HHHHHHHHccCChHHHHHHHHHHH
Q 005642 323 KHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSL--ASVISACANISSLELGEQVFARVT 396 (686)
Q Consensus 323 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~ 396 (686)
...-++.... -...+.+.+...+..|+++.|+++.+.-.... +.++..-- ..|+.+-. |.
T Consensus 174 r~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA--------------~s 239 (531)
T COG3898 174 RHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA--------------MS 239 (531)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH--------------HH
Confidence 7666665442 23566677777777777777777776655432 22332111 11111100 00
Q ss_pred HhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhH
Q 005642 397 IIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTII-TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475 (686)
Q Consensus 397 ~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 475 (686)
..+-.|. .|...-.+.. ...||.. .-..-..++.+.|+..++-.+++.+.+ ..|-+..
T Consensus 240 ~ldadp~----------------~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~i 298 (531)
T COG3898 240 LLDADPA----------------SARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDI 298 (531)
T ss_pred HhcCChH----------------HHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHH
Confidence 0000000 2222222222 3455543 233345678899999999999999983 3455554
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQM----PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
.... .+.+.|+. +..-+++. .++| +..+...+..+....|++..|..-.+.+....| ...+|..++.+-.
T Consensus 299 a~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIee 373 (531)
T COG3898 299 ALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEE 373 (531)
T ss_pred HHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHh
Confidence 3322 33455553 33333333 2455 466677788888999999999999999999999 5567999999886
Q ss_pred hc-CCcchHHHHHHHHHhcCCCCCCCcc
Q 005642 551 TS-GEWEKSSLIRDIMREKHVGKLPGCS 577 (686)
Q Consensus 551 ~~-g~~~~a~~~~~~~~~~~~~~~~~~~ 577 (686)
.. |+-.++..++-+..+. +.+|.++
T Consensus 374 AetGDqg~vR~wlAqav~A--PrdPaW~ 399 (531)
T COG3898 374 AETGDQGKVRQWLAQAVKA--PRDPAWT 399 (531)
T ss_pred hccCchHHHHHHHHHHhcC--CCCCccc
Confidence 55 9999999988766542 2445544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.61 Score=46.77 Aligned_cols=452 Identities=12% Similarity=0.088 Sum_probs=227.0
Q ss_pred HHHHHHHHHhh--ccCccchhhHHHHHHHHhCCCCCch----hhHHHHHHHHHhcCCcHHHHHHhccCCCC-ChhhHHHH
Q 005642 6 DYLARLLQSCN--THHSIHVGKQLHLHFLKKGILNSTL----PIANRLLQMYMRCGNPTDALLLFDEMPRR-NCFSWNAM 78 (686)
Q Consensus 6 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l 78 (686)
+.+.-+..++. ..++..++..++.++.+..-..+.. ...+.++++|.- .+.+.-...+....+. ....|-.|
T Consensus 5 ~~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~L 83 (549)
T PF07079_consen 5 RQYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPL 83 (549)
T ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHH
Confidence 33444444444 4478999999999998765332221 034566666653 3444444444444332 13345555
Q ss_pred HHHH--HhcCCHHHHHHHHhhCCC------C---C--------cchH-HHHHHHHHhcChhhHHHHHHHHHHHHHcCC--
Q 005642 79 IEGF--MKLGHKEKSLQLFNVMPQ------K---N--------DFSW-NMLISGFAKADLAALEYGKQIHSHILVNGL-- 136 (686)
Q Consensus 79 i~~~--~~~g~~~~A~~~~~~m~~------~---~--------~~~~-~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~-- 136 (686)
..++ -+.+.+.+|++.+..-.. + | .+.+ +.....+... |.+.+++.+++.+...=+
T Consensus 84 F~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~--g~f~EgR~iLn~i~~~llkr 161 (549)
T PF07079_consen 84 FKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIET--GRFSEGRAILNRIIERLLKR 161 (549)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhhh
Confidence 5543 477889999888765432 1 1 1111 2223333444 789999999888876544
Q ss_pred --CCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 005642 137 --DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214 (686)
Q Consensus 137 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 214 (686)
..+..+|+.++-++++.=-++ +-+.+...=..-|--++..|.+.=+.-++... ++.. |.......++....-
T Consensus 162 E~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~~~d~~~Y-~k~~-peeeL~s~imqhlfi 235 (549)
T PF07079_consen 162 ECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQRPY-EKFI-PEEELFSTIMQHLFI 235 (549)
T ss_pred hhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHHHHhhchH-HhhC-cHHHHHHHHHHHHHh
Confidence 489999999999888742221 11122211112345555555432221111110 0000 111111112211111
Q ss_pred c--CChhHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHccCChhhHHHHHHHHHHcCCCc----hHHHHHHHHHHHHhcCC
Q 005642 215 N--NEDTEALLLFHKMRRNGVLEDASTL-ASVLSACSSLGFLEHGKQVHGHACKVGVID----DVIVASALLDTYSKRGM 287 (686)
Q Consensus 215 ~--g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~----~~~~~~~l~~~~~~~g~ 287 (686)
- .+..--.+++......-+.|+.... ..+...+.. +.+++..+.+.+....+.+ =..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1112222333333333355654432 223333332 4444444444443322111 13355666777777777
Q ss_pred hhHHHHHHHhcc--cCCchh-------HHHHHHHHHh----CCCHHHHHHHHhhCCCCCchh---HHHHH---HHHHhCC
Q 005642 288 PSDACKLFSELK--VYDTIL-------LNTMITVYSS----CGRIEDAKHIFRTMPNKSLIS---WNSMI---VGLSQNG 348 (686)
Q Consensus 288 ~~~A~~~~~~~~--~~~~~~-------~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~---~~~li---~~~~~~g 348 (686)
...|.+.+.-+. +|+... -..+.+..+. .-+..+-+.+++.....|+.. -..++ .-+-+.|
T Consensus 314 T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g 393 (549)
T PF07079_consen 314 TEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIG 393 (549)
T ss_pred HHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcC
Confidence 777777766554 332221 1122222221 112233344444444444421 11122 2234455
Q ss_pred C-hhhHHHHHHHHHHCCCCCCH-HHHHHH----HHHHH---ccCChHHHHHHHHHHHHhCCCcchh----HHHHHHHH--
Q 005642 349 S-PIEALDLFCNMNKLDLRMDK-FSLASV----ISACA---NISSLELGEQVFARVTIIGLDSDQI----ISTSLVDF-- 413 (686)
Q Consensus 349 ~-~~~A~~~~~~m~~~g~~p~~-~t~~~l----l~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~-- 413 (686)
. -++|+++++.+.+- .|.. ..-+.+ =.+|. ....+..-.++-+.+.+.|++|-.. .-|.|.++
T Consensus 394 ~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 394 QCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred CccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence 5 78899999988773 4433 222222 22222 2244555566666677788876433 44555433
Q ss_pred HHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 005642 414 YCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478 (686)
Q Consensus 414 ~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 478 (686)
+...|+ ++.-.-.-+ ..+.|++.+|..+.-......++++|+.++..+ +|+..+++.
T Consensus 472 Lysqgey~kc~~ys~WL--~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L------P~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWL--TKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL------PPNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHH--HHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC------CCchhhHHH
Confidence 334444 332222222 246889999999988888999999999999854 566666554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0021 Score=42.23 Aligned_cols=42 Identities=21% Similarity=0.462 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 547 (686)
.+|..+...+...|++++|++.++++++..|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999998887764
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.021 Score=51.33 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=17.1
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 005642 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414 (686)
Q Consensus 383 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 414 (686)
|.++=....+..|.+.|+..|..+|+.|++.+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvF 97 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVF 97 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhC
Confidence 44444445555555555555555555555444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.015 Score=56.62 Aligned_cols=204 Identities=10% Similarity=0.095 Sum_probs=110.8
Q ss_pred HHHHccCCHHHHHHHHhhcCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHH--HH--CCCC-cCHHHHHHHHHH
Q 005642 179 SGYANCGKMNDARRVFDRTTDTSS-------VMWNSMISGYISNNEDTEALLLFHKM--RR--NGVL-EDASTLASVLSA 246 (686)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m--~~--~g~~-p~~~~~~~ll~~ 246 (686)
.-+++.|+......+|+...+..+ ..|..|..+|.-.+++++|+++-..= +. .|-+ -...+-..|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 348999999999999998876443 34666667777777888888764321 11 1111 112233344455
Q ss_pred HHccCChhhHHHHHHH----HHHcCC-CchHHHHHHHHHHHHhcCChh---HHHHHHHhcccCCchhHHHHHHHHHhCCC
Q 005642 247 CSSLGFLEHGKQVHGH----ACKVGV-IDDVIVASALLDTYSKRGMPS---DACKLFSELKVYDTILLNTMITVYSSCGR 318 (686)
Q Consensus 247 ~~~~~~~~~a~~~~~~----~~~~g~-~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 318 (686)
+--.|.+++|...... ..+.|- ......+..+...|...|+-- .+.+. ..++.=+ ...
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~---------g~f~~ev-----~~a 170 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEK---------GAFNAEV-----TSA 170 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhc---------ccccHHH-----HHH
Confidence 5556778877755432 233331 112334555777777665421 11000 0000000 001
Q ss_pred HHHHHHHHhhCC-------CC--CchhHHHHHHHHHhCCChhhHHHHHHHH----HHCCCCC-CHHHHHHHHHHHHccCC
Q 005642 319 IEDAKHIFRTMP-------NK--SLISWNSMIVGLSQNGSPIEALDLFCNM----NKLDLRM-DKFSLASVISACANISS 384 (686)
Q Consensus 319 ~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p-~~~t~~~ll~~~~~~~~ 384 (686)
++.|.++|.+-. +. --..|..+...|.-.|+++.|+..-+.- ++-|-+. ....+..+..++.-.|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 122333332211 11 1235666777777778888887654432 2333222 23567788888888899
Q ss_pred hHHHHHHHHHHH
Q 005642 385 LELGEQVFARVT 396 (686)
Q Consensus 385 ~~~a~~~~~~~~ 396 (686)
++.|.+.|+...
T Consensus 251 fe~A~ehYK~tl 262 (639)
T KOG1130|consen 251 FELAIEHYKLTL 262 (639)
T ss_pred cHhHHHHHHHHH
Confidence 999998888543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.27 Score=46.71 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=33.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHccCChhhHHHHHHHH
Q 005642 207 SMISGYISNNEDTEALLLFHKMRRN--GVLEDASTLASVLSACSSLGFLEHGKQVHGHA 263 (686)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 263 (686)
.+.+-|.+.|.+..|+.-++.+++. +.+........+..++...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3455566677777777777776653 22233445555666666666666666555443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.018 Score=58.60 Aligned_cols=110 Identities=10% Similarity=0.101 Sum_probs=74.4
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCC-C-----CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 005642 308 TMITVYSSCGRIEDAKHIFRTMPN-K-----SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381 (686)
Q Consensus 308 ~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 381 (686)
.+++.+....+++.+..++.+... | -+.|..+++..|...|..++++.+++.=...|+-||..|++.++..+.+
T Consensus 71 ~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~ 150 (429)
T PF10037_consen 71 IFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLK 150 (429)
T ss_pred HHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhh
Confidence 334444444444445444444432 1 2345568888888888888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 005642 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417 (686)
Q Consensus 382 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 417 (686)
.|++..|.++...|...+.-.+..++.--+..+.+.
T Consensus 151 ~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 151 KGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred cccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888777766665555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.012 Score=57.61 Aligned_cols=230 Identities=13% Similarity=0.015 Sum_probs=141.7
Q ss_pred CCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH----
Q 005642 435 PTIITFTAILS-ACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGM---- 507 (686)
Q Consensus 435 p~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~---- 507 (686)
|.-.+|..+-. .+.-.|++++|...--...+ +.+ +.+....-..++.-.++.+.|...|++. ...|+...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk---ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILK---LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHh---cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 33344444433 45567888888887776662 333 3444444444556678889999988887 45555322
Q ss_pred ---------HHHHHHHHHhcCChhHHHHHHHHHHccCCCCch----hHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCC
Q 005642 508 ---------WSSILRGCVAHGDKGLGRKVAERMIELDPENAC----AYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574 (686)
Q Consensus 508 ---------~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 574 (686)
|..-..-..+.|++..|.+.|.+++.++|++.. .|...+.+..+.|+..+|+.-.+...+ .++
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~ 318 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDS 318 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCH
Confidence 222233446889999999999999999998543 477788889999999999999885554 667
Q ss_pred CccceeeccccceeehhhhhhhhcHHH-Hhhcc-cc----cchhhhcCCCCCCCCccccccceecccccc----hhHHHH
Q 005642 575 GCSWADGIAFNCWFLDTMFLQLANFDE-IKQHQ-SA----DFCDYIHGFDQARLPLSSKRSFVLGYLLST----LSLKVV 644 (686)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 644 (686)
...+.++...+|...-+.|.++.+-++ ..+.. +. +|.+..-++ ....-..+..++|+.+.. ....-.
T Consensus 319 syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aL---kkSkRkd~ykilGi~~~as~~eikkayr 395 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLAL---KKSKRKDWYKILGISRNASDDEIKKAYR 395 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH---HHhhhhhHHHHhhhhhhcccchhhhHHH
Confidence 777778887888887777777776665 22221 11 122111111 111112333455555544 222222
Q ss_pred HHhhhccccccCch-hHHHHHHHHHHhHHHHH
Q 005642 645 YSNLCSSLVVPTRN-ELAYLLIRMVYGNILTI 675 (686)
Q Consensus 645 ~~~~~~~~~~~~~n-~~a~~~~~~~~~~~~~~ 675 (686)
--.|......++-| ..|+..++-| |+-.||
T Consensus 396 k~AL~~Hpd~~agsq~eaE~kFkev-geAy~i 426 (486)
T KOG0550|consen 396 KLALVHHPDKNAGSQKEAEAKFKEV-GEAYTI 426 (486)
T ss_pred HHHHHhCCCcCcchhHHHHHHHHHH-HHHHHH
Confidence 33344445566666 7788777765 555554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.034 Score=53.29 Aligned_cols=103 Identities=11% Similarity=0.059 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHH
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD----VGMWSSI 511 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l 511 (686)
..|...+....+.|++++|...|+.+.+.+.-.+ ....+..++.+|...|++++|...|+.+. ..|+ ...+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555555667999999999999985432211 14678899999999999999999999882 2232 4556667
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
+..+...|+.+.|...++++++..|++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 77888999999999999999999997653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0067 Score=60.97 Aligned_cols=65 Identities=15% Similarity=0.035 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch---hHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC---AYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 504 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
+...|+.+..+|...|++++|+..++++++++|++.. +|.+++.+|...|+.++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556677777777777777777777777777776653 3677777777777777777777766653
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0067 Score=45.28 Aligned_cols=63 Identities=21% Similarity=0.344 Sum_probs=47.8
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 005642 481 DLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYI 543 (686)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 543 (686)
..|.+.+++++|.+.++.+ ...| +...|......+...|++++|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4677788888888888877 3445 4566777778888888888888888888888887665443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.031 Score=50.22 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=87.8
Q ss_pred HHHhhC--CCCCchhHHHHHHHHHhC-----CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 005642 324 HIFRTM--PNKSLISWNSMIVGLSQN-----GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396 (686)
Q Consensus 324 ~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 396 (686)
..|+.. ..++-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.|++.+-+. .+-
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg-~fv---------- 103 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG-KFV---------- 103 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC-Ccc----------
Confidence 344444 345667788888777644 66777778889999999999999999999987652 221
Q ss_pred HhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCC
Q 005642 397 IIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLV-KEGQKWFDAMKWQYHIDP 471 (686)
Q Consensus 397 ~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~p 471 (686)
....+.+...-|-+..+-|++++++|...|+-||..++..++..+.+.+.. .+..++.-.|.+-.+..|
T Consensus 104 ------p~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP 173 (228)
T PF06239_consen 104 ------PRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINP 173 (228)
T ss_pred ------cccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCC
Confidence 111222222234444446888899999999999999999999988877643 345555555544334444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0033 Score=47.71 Aligned_cols=62 Identities=11% Similarity=0.171 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcc----CCC---CchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIEL----DPE---NACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.+++.+...+...|++++|+..+++++++ .++ ...++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777777788888887777777762 222 245677788888888888888888776654
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.31 Score=50.71 Aligned_cols=155 Identities=10% Similarity=0.061 Sum_probs=75.4
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCC--------
Q 005642 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD-------- 199 (686)
Q Consensus 128 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------- 199 (686)
++.+.++|-.|+.... ...++-.|++.+|-++|.+-...+ .-+..|.....++.|.+++.....
T Consensus 623 L~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~en-----RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~R 694 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHEN-----RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIR 694 (1081)
T ss_pred HHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCchh-----hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 3456777777776543 345666788999999998765432 233444444455555554432211
Q ss_pred ------CChhhHHHHHHHHHhcCChhHHHHHHHH------HHHCC---CCcCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 005642 200 ------TSSVMWNSMISGYISNNEDTEALLLFHK------MRRNG---VLEDASTLASVLSACSSLGFLEHGKQVHGHAC 264 (686)
Q Consensus 200 ------~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 264 (686)
.++.-=.+....+...|+.++|+.+.-+ +.+-+ -..+..+...+...+.+...+..|.++|..+-
T Consensus 695 KRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 695 KRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred HHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 1111111233444455666666554311 11100 11223334334444444455555555555443
Q ss_pred HcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 265 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 265 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
.. ..++++....+++++|..+-++..
T Consensus 775 D~---------ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 775 DL---------KSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred cH---------HHHhhheeecccchHhHhhhhhCc
Confidence 21 234555555566666655555444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.34 Score=50.46 Aligned_cols=41 Identities=7% Similarity=0.096 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHH
Q 005642 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261 (686)
Q Consensus 218 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 261 (686)
+-+.+.-+++|+++|-.|+... +...|+-.|++.+|.++|.
T Consensus 616 ~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH
Confidence 4455556677777776677644 3445566677777776664
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.15 Score=47.10 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 283 (686)
.-+.++..+.-.|.+.-.+..+++.++..-+.++.....+.+.-.+.||.+.|...++...+..-..+....+.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~--- 255 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL--- 255 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH---
Confidence 34455555555666666666666666654444555555566666666666666666665544322222222211111
Q ss_pred hcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHH
Q 005642 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNM 360 (686)
Q Consensus 284 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 360 (686)
-.....|.-++++..|...+.+++. .+++.-|.-..++.-.|+..+|++..+.|
T Consensus 256 -----------------------~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 256 -----------------------MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred -----------------------hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 1111223334444444444444443 23444455444555556666677776666
Q ss_pred HHC
Q 005642 361 NKL 363 (686)
Q Consensus 361 ~~~ 363 (686)
.+.
T Consensus 313 ~~~ 315 (366)
T KOG2796|consen 313 VQQ 315 (366)
T ss_pred hcc
Confidence 654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.12 Score=49.10 Aligned_cols=109 Identities=11% Similarity=0.073 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-CHHH
Q 005642 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAG---CLNEAVNLIEQM-PFEA-DVGM 507 (686)
Q Consensus 434 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~ 507 (686)
+-|...|..|...|...|+.+.|...|....+ +.| +++.+..+..++..+. ...++.++|+++ ...| ++..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 33788999999999999999999999999884 444 6777888887776543 467889999998 4566 5666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 546 (686)
...|...+...|++.+|...++.|++..|.+.+ +..++
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~-rr~~i 267 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP-RRSLI 267 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc-hHHHH
Confidence 777788899999999999999999998887655 44443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.23 Score=45.85 Aligned_cols=59 Identities=17% Similarity=0.136 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 005642 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396 (686)
Q Consensus 338 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 396 (686)
+.++..+.-.+.+.-.+.++++.++...+.++.....+.+.-.+.|+.+.|...|++..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34444444455555555555555554434444444455555555555555555555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.065 Score=46.51 Aligned_cols=107 Identities=16% Similarity=0.262 Sum_probs=71.2
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 005642 447 CDHCGLVKEGQKWFDAMKWQYHID--PEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524 (686)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 524 (686)
....++.+.+.+.++++...+.-+ |+... ..-.......++.. -......++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 345677788888877776332211 12111 11112222222222 134566677888899999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 525 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
...+++++..+|-+...|..++.+|...|+..+|.++++++.+
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887753
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.58 Score=47.69 Aligned_cols=181 Identities=11% Similarity=0.124 Sum_probs=104.3
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC---CcchhHHHHHHHHHHhchhHH
Q 005642 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL---DSDQIISTSLVDFYCKCGYDA 421 (686)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~A 421 (686)
-+..++..-++.-++..+ +.||-.+.-+++ +-.......++++++++..+.|- ..+.... . .
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~-----~---~---- 243 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEASLGKSQFLQ-----H---H---- 243 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHhhchhhhhh-----c---c----
Confidence 344555555555555555 345543333222 22234456777788877665431 1110000 0 0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 005642 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP- 500 (686)
Q Consensus 422 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 500 (686)
-...+........|-..+-..+...+.+.|+.++|++.++++.+.........+...|+.++...+.+.++..++.+..
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 0011111112222223344556667788999999999999998544322345678899999999999999999999884
Q ss_pred -CCCC--HHHHHHHHHHHHhcCCh---------------hHHHHHHHHHHccCCCCch
Q 005642 501 -FEAD--VGMWSSILRGCVAHGDK---------------GLGRKVAERMIELDPENAC 540 (686)
Q Consensus 501 -~~p~--~~~~~~li~~~~~~g~~---------------~~A~~~~~~~~~~~p~~~~ 540 (686)
.-|. ...|+..+-..+..++. ..|.+++.++.+.+|.-+.
T Consensus 324 i~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 324 ISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred ccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 2243 33466655444444431 2356788999998885443
|
The molecular function of this protein is uncertain. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.28 Score=45.33 Aligned_cols=60 Identities=15% Similarity=0.031 Sum_probs=31.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 005642 207 SMISGYISNNEDTEALLLFHKMRRNGV--LEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266 (686)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 266 (686)
.....+.+.|++.+|++.|+++...-. +--......+..++.+.|+++.|...++..++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334445566666666666666655311 111223444555566666666666666666554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.99 E-value=2.9 Score=44.91 Aligned_cols=131 Identities=12% Similarity=0.052 Sum_probs=72.7
Q ss_pred HCCCCcCHHHHHH-----HHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh--hHHH-HHHHhccc-
Q 005642 230 RNGVLEDASTLAS-----VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP--SDAC-KLFSELKV- 300 (686)
Q Consensus 230 ~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~--~~A~-~~~~~~~~- 300 (686)
.-|++.+..-|.. ++.-+...+.+..|.++-..+...-... ..++......+.+..+. +++. .+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466666555544 3445556677777777766553321111 45566666666665332 1222 22233333
Q ss_pred -CCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC--------CchhHHHHHHHHHhCCChhhHHHHHHHHH
Q 005642 301 -YDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--------SLISWNSMIVGLSQNGSPIEALDLFCNMN 361 (686)
Q Consensus 301 -~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (686)
-+..+|....+-....|+.+-|..+++.=+.. +..-+..-+.-....|+.+-...++-.+.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 34567777777777888888888887754431 22234444555556666666655555444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.84 E-value=1.8 Score=43.41 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 504 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
+--.+.+++.++.-.|+.++|.+.++++..+.|+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 45556788899999999999999999999887743
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.016 Score=43.95 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
.++..+...+...|++++|++.++++++
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555666666666666666666554
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.16 Score=42.40 Aligned_cols=99 Identities=18% Similarity=0.148 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSAC 447 (686)
Q Consensus 368 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 447 (686)
|..++..++-++++.|+++....+.+..- |+.++...-. .- --......|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~--------------~~--~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKE--------------GD--YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcccc--------------Cc--cCCCCCCCCCHHHHHHHHHHH
Confidence 34566677777777777777766665432 2221110000 00 011234678899999999999
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 484 (686)
+..|++..|+++.+...+.++++-+..+|..|+.-..
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999888887778888888776443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.18 Score=51.11 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHH
Q 005642 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 504 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (686)
|+.....+..+..-.++.+.|...++++..++|+.+.+|...++++.-.|+.++|.+.+++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444555555555555555555555555555555555555555555555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.15 Score=50.31 Aligned_cols=124 Identities=16% Similarity=0.185 Sum_probs=84.2
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcC----CCC---------ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHH
Q 005642 445 SACDHCGLVKEGQKWFDAMKWQYH----IDP---------EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFE-ADVGMWS 509 (686)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~----~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~ 509 (686)
..+.+.|++..|...|++.+.-.. .++ -..++..+.-++.+.+++.+|++..++. ... +++-..-
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 356777888888888777653222 111 1234666777778888888888877776 333 3566666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchH-HHHHHHHHhc
Q 005642 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS-SLIRDIMREK 568 (686)
Q Consensus 510 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 568 (686)
.-..+|...|+++.|+..|+++++++|+|-.+-..++..-.+..++.+. .++|..|..+
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6777888888888888888888888888877777777666665555544 5567777653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.6 Score=44.47 Aligned_cols=140 Identities=11% Similarity=0.126 Sum_probs=99.0
Q ss_pred HHHHHHHHHHH-CCCCCCH-HHHHHHHHHHh---------ccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcC
Q 005642 420 DALALFNEMRN-TGVKPTI-ITFTAILSACD---------HCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAG 487 (686)
Q Consensus 420 ~A~~~~~~m~~-~~~~p~~-~~~~~ll~~~~---------~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 487 (686)
.|+.+|.+... ....|+. ..|..+..++. ......+|.+.-+... .+.| |+.....++.++.-.|
T Consensus 276 ~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 276 RAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHhhc
Confidence 78888888872 2345554 33433333222 1234556777777666 4566 7888888988888899
Q ss_pred ChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH--HHHhhcCCcchHHHHHH
Q 005642 488 CLNEAVNLIEQMP-FEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS--SIFATSGEWEKSSLIRD 563 (686)
Q Consensus 488 ~~~~A~~~~~~~~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~a~~~~~ 563 (686)
+++.|...|++.. +.|+ ...|......+.-.|+.++|.+.++++++++|....+-..-. ..|+..+ .++|.+++-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 9999999999984 7776 556777777778899999999999999999998655444333 3466555 777777654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.044 Score=54.00 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=76.1
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--------C---------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 005642 479 MVDLFARAGCLNEAVNLIEQMP--------F---------EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~--------~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 541 (686)
-...|.+.|++..|...|++.. . ..-..++.++.-++.+.+++..|++...+.++++|+|.-+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 3456778888888888887741 1 1123567788888999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 542 YIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 542 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
+..-+.+|...|+++.|+..|+++++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999999999999999999999988873
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.3 Score=40.88 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=19.7
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChH
Q 005642 445 SACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLN 490 (686)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 490 (686)
..|.+.|.+..|..-++.+++.+.-.+ .......++.+|.+.|..+
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 344555555555555555553322211 1233444445555555444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.9 Score=43.32 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=18.7
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 379 (686)
.|+.++|++++..+......++..||..+...|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 566666666666654444555555555555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.15 Score=43.97 Aligned_cols=92 Identities=12% Similarity=0.014 Sum_probs=73.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcC
Q 005642 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-F-EADVGMWSSILRGCVAHG 519 (686)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~li~~~~~~g 519 (686)
...-+-..|++++|..+|+-+.. ..| +..-+..|..++...+.+++|+..|.... . .-|+...-....++...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~---~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI---YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 34455688999999999999872 445 67788899999999999999999998762 2 224444556788999999
Q ss_pred ChhHHHHHHHHHHccCCCC
Q 005642 520 DKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~ 538 (686)
+.+.|+..|+.+++ .|.+
T Consensus 120 ~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 120 KAAKARQCFELVNE-RTED 137 (165)
T ss_pred CHHHHHHHHHHHHh-Ccch
Confidence 99999999999997 5654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.52 Score=38.65 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=55.3
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 487 g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
|+......-+-.+. .+.......++.+..+|+-+.-.+++..+...+..++.....++.+|.+.|+..++.+++++..
T Consensus 70 ~NlKrVi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 70 GNLKRVIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp S-THHHHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 34444444433332 2345556677888999999998899988886454577889999999999999999999999999
Q ss_pred hcCCC
Q 005642 567 EKHVG 571 (686)
Q Consensus 567 ~~~~~ 571 (686)
++|++
T Consensus 148 ekG~k 152 (161)
T PF09205_consen 148 EKGLK 152 (161)
T ss_dssp HTT-H
T ss_pred HhchH
Confidence 98874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.19 Score=47.12 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=68.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHH
Q 005642 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM----PFEA-DVGMWSSIL 512 (686)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~li 512 (686)
.|+.-+. +.+.|++..|...|...++.+--.+ ....+..|+..+...|++++|...|..+ +..| -+..+--+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555443 4456778888888888875332222 3556667888888888888888777766 2222 245666677
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchh
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 541 (686)
....+.|+.++|...+++..+..|+.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 77777888888888888888877766543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.15 Score=41.61 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=64.5
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC----chhHHHHHHHHhhcCC
Q 005642 481 DLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN----ACAYIQLSSIFATSGE 554 (686)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~ 554 (686)
-++...|+.+.|++.|.+. .+-| ....||.-..+++-+|+.++|+.-+++++++..+. -.+|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566778888888888776 2333 56678888888888888888888888888854322 1346667777888888
Q ss_pred cchHHHHHHHHHhcC
Q 005642 555 WEKSSLIRDIMREKH 569 (686)
Q Consensus 555 ~~~a~~~~~~~~~~~ 569 (686)
-+.|+.=|....+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888887776655
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.12 E-value=1.3 Score=42.21 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=89.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCC
Q 005642 445 SACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS---SILRGCVAHGD 520 (686)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~---~li~~~~~~g~ 520 (686)
......|++.+|...|+.... ..| +...-..++.+|...|+.+.|..++..++..-....+. .-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~---~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQ---AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHH---hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 356678999999999999873 234 56778889999999999999999999997443333232 33445555555
Q ss_pred hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 521 KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 521 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..+... +++-...+|++...-..++..+...|+.++|.+.+=.+.++
T Consensus 219 ~~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 219 TPEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 554443 33444569999999999999999999999999976656554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.10 E-value=3.6 Score=40.18 Aligned_cols=261 Identities=13% Similarity=0.049 Sum_probs=130.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH-hc------ccCC--chhHHHHHHHHHhCCCHHHHHHHHhhCCC-C------C-chh
Q 005642 274 VASALLDTYSKRGMPSDACKLFS-EL------KVYD--TILLNTMITVYSSCGRIEDAKHIFRTMPN-K------S-LIS 336 (686)
Q Consensus 274 ~~~~l~~~~~~~g~~~~A~~~~~-~~------~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~------~-~~~ 336 (686)
++..+.++.++.|.++++...-- .| .+.+ -.+|..+.+++-+.-++.+++.+-..-.. | + ...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 44455556666666655543211 11 0111 12344555555555555555544433221 1 1 123
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHH
Q 005642 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLR-----MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411 (686)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 411 (686)
...|..++...+.++++++.|+...+--.. ..-..+..+-+.|.+..++++|.-+...+.+
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~-------------- 190 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAE-------------- 190 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHH--------------
Confidence 334555666666777777777766542111 1223555666666666666666555543322
Q ss_pred HHHHhchhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCCC-ChhHHHHHHHHHHh
Q 005642 412 DFYCKCGYDALALFNEMRNTGVKP--TIITFTAILSACDHCGLVKEGQKWFDAMKW---QYHIDP-EIEHYSCMVDLFAR 485 (686)
Q Consensus 412 ~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~p-~~~~~~~l~~~~~~ 485 (686)
+.....-.++.. .....-.+.-++...|....|.+..++..+ ..|-.| -.....++.+.|..
T Consensus 191 ------------lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 191 ------------LVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred ------------HHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 222211111000 011222344467778888888888887653 233333 24556788899999
Q ss_pred cCChHHHHHHHHhC-C----CCC---CHHHHHHHHHHHHhcCCh-----hHHHHHHHHHHcc----CCC--CchhHHHHH
Q 005642 486 AGCLNEAVNLIEQM-P----FEA---DVGMWSSILRGCVAHGDK-----GLGRKVAERMIEL----DPE--NACAYIQLS 546 (686)
Q Consensus 486 ~g~~~~A~~~~~~~-~----~~p---~~~~~~~li~~~~~~g~~-----~~A~~~~~~~~~~----~p~--~~~~~~~l~ 546 (686)
.|+.+.|+.-|+.. . ... .+.....+...+...+-. =.|+++-++.+++ .-+ --.....++
T Consensus 259 ~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla 338 (518)
T KOG1941|consen 259 RGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLA 338 (518)
T ss_pred cccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999888765 1 110 122223333332222211 2355655665552 221 123466788
Q ss_pred HHHhhcCCcchHHH
Q 005642 547 SIFATSGEWEKSSL 560 (686)
Q Consensus 547 ~~~~~~g~~~~a~~ 560 (686)
.+|...|.-++-..
T Consensus 339 ~iYrs~gl~d~~~~ 352 (518)
T KOG1941|consen 339 SIYRSKGLQDELRA 352 (518)
T ss_pred HHHHhccchhHHHH
Confidence 88877776655444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.17 Score=51.32 Aligned_cols=63 Identities=6% Similarity=-0.010 Sum_probs=42.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADV----GMWSSILRGCVAHGDKGLGRKVAERMIEL 534 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 534 (686)
+...+..+..+|.+.|++++|+..|++. .+.|+. ..|.++..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666777777777777777777664 455653 24666777777777777777777777765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.88 E-value=6.9 Score=42.23 Aligned_cols=90 Identities=13% Similarity=0.100 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhc-ChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 005642 76 NAMIEGFMKLGHKEKSLQLFNVMPQKN---DFSWNMLISGFAKA-DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151 (686)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~ll~~~~~~-~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~ 151 (686)
..+|.-+...+.+..|+++-..+..|. ...|...-+-..+. ...+-+.+..+-+.+... . -+...|..+..--.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHH
Confidence 345666666777777777776666554 23333333333322 122333333333333221 2 23334555555555
Q ss_pred hcCChHHHHHHHhccC
Q 005642 152 KCGDFNSANQVLNMMK 167 (686)
Q Consensus 152 ~~g~~~~A~~~~~~~~ 167 (686)
.+|+++-|..+++.=+
T Consensus 519 ~~GR~~LA~kLle~E~ 534 (829)
T KOG2280|consen 519 QEGRFELARKLLELEP 534 (829)
T ss_pred hcCcHHHHHHHHhcCC
Confidence 6788888877776543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.84 E-value=1.4 Score=37.72 Aligned_cols=123 Identities=12% Similarity=0.257 Sum_probs=62.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 005642 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452 (686)
Q Consensus 374 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 452 (686)
.++..+...+.......+++.+.+.+ ..+....+.++..|++... +.++.+.. ..+......++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDPQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCHHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34445555556666666666666555 3555566666666666544 33333331 1122333345556666666
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005642 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA-GCLNEAVNLIEQMPFEADVGMWSSILRGCV 516 (686)
Q Consensus 453 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~li~~~~ 516 (686)
++++..++.++. . +...++.+... ++++.|.+++.+.. +...|..++..+.
T Consensus 85 ~~~~~~l~~k~~----~------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDG----N------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhc----C------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 666666665432 0 11122222222 56666666666532 4445555554443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.19 Score=47.11 Aligned_cols=93 Identities=15% Similarity=0.212 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC---CchhHHH
Q 005642 475 HYSCMVDLFARAGCLNEAVNLIEQMP-------FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE---NACAYIQ 544 (686)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~ 544 (686)
.|+.-++.| +.|++.+|...|.... ..|+..- -|..++...|++++|...|..+..-.|+ -+.++.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~y--WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYY--WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHH--HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 566666544 5678999999998771 3344444 4889999999999999999999997766 4567888
Q ss_pred HHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 545 LSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 545 l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
++.+..+.|+.++|..+++++.++-+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999987543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.80 E-value=4.4 Score=39.56 Aligned_cols=62 Identities=8% Similarity=-0.081 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhCCChh---hHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 005642 336 SWNSMIVGLSQNGSPI---EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398 (686)
Q Consensus 336 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 398 (686)
+...++.+|...+..+ +|..+++.+... ..-....+..-+..+.+.++.+.+.+++..|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4556667777666544 455555556443 2222444445566666677788888888877765
|
It is also involved in sporulation []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.86 Score=38.48 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=31.8
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
...+.|++++|.+.|+.+...+-..| ....-..++.+|.+.|++++|...+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34455666666666666664433333 3445556666666666666666666554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.68 E-value=2.7 Score=47.61 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=46.5
Q ss_pred HHHhCCCHHHHHHHHhhCCCCCchh---HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 005642 312 VYSSCGRIEDAKHIFRTMPNKSLIS---WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388 (686)
Q Consensus 312 ~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 388 (686)
+|...|++.+|+.+-.++..+-... -..|+.-+...+++-+|-++..+.... ..-.+..+++...+++|
T Consensus 974 a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEA 1045 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHH
Confidence 4446788888888888776642222 256777778888888888777766542 12233445555666666
Q ss_pred HHHHH
Q 005642 389 EQVFA 393 (686)
Q Consensus 389 ~~~~~ 393 (686)
.++-.
T Consensus 1046 lrva~ 1050 (1265)
T KOG1920|consen 1046 LRVAS 1050 (1265)
T ss_pred HHHHH
Confidence 65544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.43 Score=39.78 Aligned_cols=94 Identities=14% Similarity=0.085 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~ 515 (686)
|..++..++.++++.|+.+....+.+..- |+.++...- .+. +-..-+..|+..+..+++.++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHH
Confidence 45678888999999999999888887643 555442210 000 111113667777777777777
Q ss_pred HhcCChhHHHHHHHHHHccCC--CCchhHHHHHH
Q 005642 516 VAHGDKGLGRKVAERMIELDP--ENACAYIQLSS 547 (686)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~ 547 (686)
+..|++..|.++.+...+..| -....|..|..
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777778877777777776443 22345665554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.077 Score=32.31 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 537 (686)
..|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777777775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.34 E-value=1.1 Score=37.75 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQMP----FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
+-.-.....+.|++++|.+.|+.+. ..| ....--.++.++-+.++++.|...+++.++++|.++.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3334445567899999999999983 222 2445566889999999999999999999999998654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.34 E-value=1.7 Score=45.27 Aligned_cols=158 Identities=13% Similarity=0.077 Sum_probs=97.0
Q ss_pred HHHHhcCChhHHHHHHHHHH-HCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 005642 210 SGYISNNEDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288 (686)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 288 (686)
....-.++++++.+....-. -..++ ..-...++..+.+.|..+.|.++-. |+. .-.+...++|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCH
Confidence 34445677777766664111 11122 3345667777778888888877642 222 234556678888
Q ss_pred hHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 005642 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368 (686)
Q Consensus 289 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 368 (686)
+.|.+..++.. +...|..|.....++|+++-|++.|.+..+ |..++-.|.-.|+.+.-.++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~---- 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG---- 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc----
Confidence 88887766544 566888888888888888888888888764 5667777888888877777777666654
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHH
Q 005642 369 KFSLASVISACANISSLELGEQVFAR 394 (686)
Q Consensus 369 ~~t~~~ll~~~~~~~~~~~a~~~~~~ 394 (686)
-++....++.-.|+.++..+++..
T Consensus 404 --~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 --DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred --CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 255566666677888887777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.43 Score=41.29 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHH-----cCCCchHHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-----VGVIDDVIV 274 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 274 (686)
+...++..+...|++++|+.+.+.+... -+-|...+..+|.++...|+...|.+.|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4445556666677777777777777664 234566677777777777777777777666533 366666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.12 Score=31.39 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666666666666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.10 E-value=1.5 Score=41.11 Aligned_cols=123 Identities=11% Similarity=0.079 Sum_probs=76.0
Q ss_pred HHhhCC--CCCchhHHHHHHHHHhC-----CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 325 IFRTMP--NKSLISWNSMIVGLSQN-----GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 325 ~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
.|..+. ++|-.+|-.++..+... +..+-.-..++.|.+-|+.-|..+|..|+..+-+..-.
T Consensus 56 ~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi------------ 123 (406)
T KOG3941|consen 56 QFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI------------ 123 (406)
T ss_pred hhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc------------
Confidence 344444 35556677776666543 44555556677788888888888888888766543311
Q ss_pred hCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHH
Q 005642 398 IGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLV-KEGQKWFDAMK 464 (686)
Q Consensus 398 ~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~ 464 (686)
|. .++....-.|-+..+=+++++++|...|+.||..+-..|+.++.+.+-. .+..++.-.|-
T Consensus 124 ----P~-nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 124 ----PQ-NVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred ----cH-HHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 11 1122222233333335788889999999999999888899888877643 23444444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.01 E-value=3.9 Score=35.83 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=60.7
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccC
Q 005642 222 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301 (686)
Q Consensus 222 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 301 (686)
+++++.+.+.+++|+...+..++..+.+.|.+....+ ++..++-+|.......+-.+. +....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3455555667777777777777777777777654333 334444333332222221111 1222222222222222
Q ss_pred CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHH
Q 005642 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357 (686)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 357 (686)
=...+..++..+...|++-+|.++......-+......++.+..+.++...=..+|
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHH
Confidence 12233444455555566666665555543333333344444444444443333333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.87 E-value=5.3 Score=36.90 Aligned_cols=113 Identities=11% Similarity=0.046 Sum_probs=73.9
Q ss_pred cCCHHHHHHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHh
Q 005642 450 CGLVKEGQKWFDAMKWQYHI----DPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-------FEADV-GMWSSILRGCVA 517 (686)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~li~~~~~ 517 (686)
.-++++|+++|++...-... ..-.+.+......+.+...+++|-..+.+-. .-|+. ..+-..|-.+.-
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~ 202 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY 202 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh
Confidence 44566666666665421111 1124556667778888888888877766552 22232 235555556666
Q ss_pred cCChhHHHHHHHHHHc----cCCCCchhHHHHHHHHhhcCCcchHHHHHH
Q 005642 518 HGDKGLGRKVAERMIE----LDPENACAYIQLSSIFATSGEWEKSSLIRD 563 (686)
Q Consensus 518 ~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 563 (686)
..|+..|+..++.--+ ..|++..+...|+.+| ..|+.+++..++.
T Consensus 203 ~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 203 AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 7789999999988655 4577777888888877 7788888877654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.81 E-value=1.7 Score=41.82 Aligned_cols=146 Identities=13% Similarity=0.034 Sum_probs=99.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHc---CCCchHHHHHHHHHHHHhcCChhH
Q 005642 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV---GVIDDVIVASALLDTYSKRGMPSD 290 (686)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~ 290 (686)
-.|+..+|-..++++++. .+.|...+...-.+|...|+...-+..++++... ++|....+...+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 357777777778887765 5667777777777788888888777777777654 233333444555566677888888
Q ss_pred HHHHHHhccc---CCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC--Cc-----hhHHHHHHHHHhCCChhhHHHHHHHH
Q 005642 291 ACKLFSELKV---YDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SL-----ISWNSMIVGLSQNGSPIEALDLFCNM 360 (686)
Q Consensus 291 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~-----~~~~~li~~~~~~g~~~~A~~~~~~m 360 (686)
|++.-++..+ -|..+..++...+--.|+..++.++..+-... .. .-|-.....+...+.++.|+++|+.-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 8888887663 35556677778888888888888888776541 11 12333444556668888888888653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.62 Score=44.72 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHH----HHHHHhcCChHHHHHH
Q 005642 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM----VDLFARAGCLNEAVNL 495 (686)
Q Consensus 420 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~~~A~~~ 495 (686)
+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++.. ...|+...|..+ .-++...|-+++|.+.
T Consensus 121 ~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~ 197 (491)
T KOG2610|consen 121 EAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYDDAEKQ 197 (491)
T ss_pred HHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccchhHHHH
Confidence 555555565543 233555555555566666666666666666552 223444333322 2233456666666666
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC----chhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 496 IEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN----ACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 496 ~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
-++. .+.| |.-.-.+....+...|+..++.++..+-...-... ...|=..+-.+.+.+.|+.|.++++.=.-+.
T Consensus 198 A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~ 277 (491)
T KOG2610|consen 198 ADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKR 277 (491)
T ss_pred HHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHH
Confidence 6655 2333 34444455555556666666665554433321110 0112222333444566666666665444344
Q ss_pred CCCCCC
Q 005642 570 VGKLPG 575 (686)
Q Consensus 570 ~~~~~~ 575 (686)
++++.+
T Consensus 278 l~k~Da 283 (491)
T KOG2610|consen 278 LEKDDA 283 (491)
T ss_pred hhccch
Confidence 444444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.72 E-value=4.4 Score=38.73 Aligned_cols=14 Identities=29% Similarity=0.192 Sum_probs=5.6
Q ss_pred HHHHhCCChhhHHH
Q 005642 342 VGLSQNGSPIEALD 355 (686)
Q Consensus 342 ~~~~~~g~~~~A~~ 355 (686)
..+...|+.++|++
T Consensus 244 ~~~~~~g~~e~Ale 257 (304)
T COG3118 244 DQLHLVGRNEAALE 257 (304)
T ss_pred HHHHHcCCHHHHHH
Confidence 33333444444433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.26 Score=43.54 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=63.3
Q ss_pred HHHhcCChHHHHHHHHhCC-CCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCC
Q 005642 482 LFARAGCLNEAVNLIEQMP-FEA------DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554 (686)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~-~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 554 (686)
-+.+.|++++|..-|...- .-| ....|..-..++.+.+..+.|+.-..++++++|.+..+...-+.+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 3456677777777766651 111 134455556667788888888888888888888877777777888888888
Q ss_pred cchHHHHHHHHHhc
Q 005642 555 WEKSSLIRDIMREK 568 (686)
Q Consensus 555 ~~~a~~~~~~~~~~ 568 (686)
+++|++=++++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888888773
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.67 E-value=6 Score=36.78 Aligned_cols=120 Identities=22% Similarity=0.236 Sum_probs=90.0
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhc
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDP----EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD--VGMWSSILRGCVAH 518 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~~~li~~~~~~ 518 (686)
.+...|+++.|...+.+... ..| ....+......+...++.+++...+.+.. ..++ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 67788999999999998862 233 34445555555677889999998888873 3333 56677788888888
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 519 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
++.+.|...+....+..|.....+..+...+...++++++...+.+..+.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999999988875566777777777777788888888776654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.47 E-value=5.8 Score=36.66 Aligned_cols=81 Identities=11% Similarity=0.113 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCCCC--hhhHHHHHHHHHhc
Q 005642 141 VLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTDTS--SVMWNSMISGYISN 215 (686)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~ 215 (686)
..|.....+|....+++.|...+.+..+ .+...|. ....++.|.-+.+++.+.+ +..|+--...|...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4566666777777888887776666542 2222222 1223344444444444432 23455566677777
Q ss_pred CChhHHHHHHHHH
Q 005642 216 NEDTEALLLFHKM 228 (686)
Q Consensus 216 g~~~~A~~~~~~m 228 (686)
|.++-|-..+++.
T Consensus 105 GspdtAAmaleKA 117 (308)
T KOG1585|consen 105 GSPDTAAMALEKA 117 (308)
T ss_pred CCcchHHHHHHHH
Confidence 7777666665554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.47 E-value=6.7 Score=36.75 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=40.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 005642 478 CMVDLFARAGCLNEAVNLIEQMP-FEA----DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 539 (686)
.+.+.|.+.|.+..|..-++++. .-| ....+-.+..+|...|-.++|.....-+....|++.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 45667777777777777777662 111 234456667778888888887776666655556553
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.37 E-value=10 Score=38.46 Aligned_cols=77 Identities=9% Similarity=0.130 Sum_probs=58.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhccCCCCh---hhHHHHHHHHHccCCHHHHHHHHhhcCC--CChhhHHHHHHH
Q 005642 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD---FCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISG 211 (686)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 211 (686)
+.|+..|-.|+.-|...|..++.++++++|..|-. ..|...+++=....++...+.+|.+... -+...|..-+.-
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~Y 118 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLEY 118 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHHH
Confidence 55778899999999999999999999999987654 3677777777777888888888887654 345666665554
Q ss_pred HH
Q 005642 212 YI 213 (686)
Q Consensus 212 ~~ 213 (686)
-.
T Consensus 119 IR 120 (660)
T COG5107 119 IR 120 (660)
T ss_pred HH
Confidence 33
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.25 E-value=15 Score=40.06 Aligned_cols=74 Identities=9% Similarity=0.074 Sum_probs=46.5
Q ss_pred HHHHhcCChHHHHHHHhccCC--C---ChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH
Q 005642 148 NLYGKCGDFNSANQVLNMMKE--P---DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 221 (686)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 221 (686)
+.+.+.+.+++|+...+.... + -...+..+|..+.-.|++++|-...-+|...+..-|.--+..+...++....
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 445566677777777666553 1 2235666677777777777777777666666666666666666666555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.03 E-value=2.8 Score=44.34 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=77.2
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHhccCC--CChhhHHHHH-HHHHccCCHHHHHHHHhhcCCC-------ChhhHHH
Q 005642 142 LGSSLVNLYGK----CGDFNSANQVLNMMKE--PDDFCLSALI-SGYANCGKMNDARRVFDRTTDT-------SSVMWNS 207 (686)
Q Consensus 142 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ 207 (686)
.|+..+..++. ..+.+.|.++++.+.+ |+...|...- ..+...|++++|++.|++.... ....+--
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~E 310 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFE 310 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHH
Confidence 35555544443 3456777777777775 6655554333 4456678888888888754431 2234555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HccCCh-------hhHHHHHHHHHH
Q 005642 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC-SSLGFL-------EHGKQVHGHACK 265 (686)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~-------~~a~~~~~~~~~ 265 (686)
+.-.+.-.++|++|.+.|..+.+.. .-+..+|.-+..+| ...++. ++|.+++.++..
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6666777889999999999988753 33444555555444 355666 778888776644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.76 Score=37.61 Aligned_cols=89 Identities=13% Similarity=0.088 Sum_probs=68.7
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCC-CH---HHHHHHHHHHHhc
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEA-DV---GMWSSILRGCVAH 518 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p-~~---~~~~~li~~~~~~ 518 (686)
+.+..|+.+.|++.|.+.. .+-| ....|+.-..++.-+|+.++|++-+++.- ..| .. ..|..-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 5678899999999999987 4556 78899999999999999999999888762 112 22 2244444568889
Q ss_pred CChhHHHHHHHHHHccCCC
Q 005642 519 GDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 519 g~~~~A~~~~~~~~~~~p~ 537 (686)
|+.+.|..-|+.+-++...
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 9999998888877775543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.93 E-value=3 Score=43.46 Aligned_cols=132 Identities=16% Similarity=0.110 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChh
Q 005642 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219 (686)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 219 (686)
..-.+.++..+-+.|..+.|+.+.+. | ..-.....+.|+++.|.++.++.. +...|..|.....++|+++
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D---~-----~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~ 364 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD---P-----DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIE 364 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS----H-----HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC---h-----HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHH
Confidence 44577888888888999999887643 1 345566778899999988887766 4668999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHH
Q 005642 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296 (686)
Q Consensus 220 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 296 (686)
-|.+.|++... |..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..+++.
T Consensus 365 lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 365 LAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 99999987643 45666677778888888888777776652 2334445555677777766665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.75 E-value=7.6 Score=41.13 Aligned_cols=115 Identities=12% Similarity=0.036 Sum_probs=78.8
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHhcCChh
Q 005642 450 CGLVKEGQKWFDAMKWQYHIDPEIEHY-SCMVDLFARAGCLNEAVNLIEQMP-FE-----ADVGMWSSILRGCVAHGDKG 522 (686)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~-~~-----p~~~~~~~li~~~~~~g~~~ 522 (686)
..+.+.|.++++.+.+ .-|+...| -.-.+.+...|++++|++.|++.. .+ .....+--+...+...++++
T Consensus 246 ~~~~~~a~~lL~~~~~---~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK---RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 5678889999999883 24654444 445566778899999999999752 11 12233445566677889999
Q ss_pred HHHHHHHHHHccCCCCchhHHHH-HHHHhhcCCc-------chHHHHHHHHHh
Q 005642 523 LGRKVAERMIELDPENACAYIQL-SSIFATSGEW-------EKSSLIRDIMRE 567 (686)
Q Consensus 523 ~A~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~-------~~a~~~~~~~~~ 567 (686)
+|...+.++.+...-+...|.-+ +-.+...|+. ++|.++++++-.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999999998665444444443 3445667888 777777776654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.53 E-value=1.2 Score=41.78 Aligned_cols=89 Identities=12% Similarity=0.158 Sum_probs=63.5
Q ss_pred CChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccC----------------ChhhHHH
Q 005642 200 TSSVMWNSMISGYISN-----NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG----------------FLEHGKQ 258 (686)
Q Consensus 200 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------------~~~~a~~ 258 (686)
+|-.+|-+.+..+... +..+=....++.|.+-|+.-|..+|..|++.+-+.. +-+-+.+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 4555666666655443 455656667788888888889999988888764322 2244678
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 005642 259 VHGHACKVGVIDDVIVASALLDTYSKRGMP 288 (686)
Q Consensus 259 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 288 (686)
++++|...|+.||..+-..|++++.+.+-.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 888888888888888888888888776653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.36 E-value=1.1 Score=43.68 Aligned_cols=224 Identities=13% Similarity=0.053 Sum_probs=131.8
Q ss_pred HHHhCCChhhHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCcc---hhHHHHHHHHHH
Q 005642 343 GLSQNGSPIEALDLFCNMNKLD--LRMDKFSLASVISACANISSLELGEQVFARVTII--GLDSD---QIISTSLVDFYC 415 (686)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~ 415 (686)
-+....+.++|+..+.+-..+- ..--..++..+..+.++.|.+++++..---.++. ..... ...|..|..++.
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788889988887766531 1112345667777778888777766543322111 11111 112222332222
Q ss_pred hchh--HHHHHHHHHHH-CCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CC--ChhHHHHHHHHHHh
Q 005642 416 KCGY--DALALFNEMRN-TGVKP---TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI--DP--EIEHYSCMVDLFAR 485 (686)
Q Consensus 416 ~~~~--~A~~~~~~m~~-~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~ 485 (686)
+.-+ +++.+-..-.. .|..| ......++..++...+.++++++.|+...+-..- +| ...++-.|...|.+
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 2221 23322222111 12222 1234445666777788899999999987632221 12 34678889999999
Q ss_pred cCChHHHHHHHHhC-------CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccC------CCCchhHHHHHH
Q 005642 486 AGCLNEAVNLIEQM-------PFEAD-----VGMWSSILRGCVAHGDKGLGRKVAERMIELD------PENACAYIQLSS 547 (686)
Q Consensus 486 ~g~~~~A~~~~~~~-------~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~ 547 (686)
..++++|.-+..+. .+..- ....-.+.-+++..|..-.|.+..+++.++. |-.......++.
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 99999887666554 22211 1223345566888899999988888887732 334445667889
Q ss_pred HHhhcCCcchHHHHHHHHH
Q 005642 548 IFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~ 566 (686)
+|...|+.|.|..-++...
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 9999999999888887654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.31 E-value=4.5 Score=39.61 Aligned_cols=153 Identities=12% Similarity=0.080 Sum_probs=82.9
Q ss_pred chHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh--cC----ChHHHHHHHhccCCCChhhHHHH
Q 005642 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK--CG----DFNSANQVLNMMKEPDDFCLSAL 177 (686)
Q Consensus 104 ~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~~~~~l 177 (686)
.++.+++..-.......++....+++.+.+.|+..+..+|-+....... .. ....|.++++.|++....
T Consensus 61 ~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f----- 135 (297)
T PF13170_consen 61 FILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF----- 135 (297)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc-----
Confidence 3444444443332345667778889999999998888777664443333 11 245566677777641100
Q ss_pred HHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC----hhHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHccC
Q 005642 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE----DTEALLLFHKMRRNGVLEDA--STLASVLSACSSLG 251 (686)
Q Consensus 178 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~ 251 (686)
+..++-.++..|+.. ..++ .+.+..+|+.+.+.|+..+. .....++..+....
T Consensus 136 -------------------LTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~ 194 (297)
T PF13170_consen 136 -------------------LTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDD 194 (297)
T ss_pred -------------------ccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccc
Confidence 000112233333222 2222 24566677777776765533 23444444433222
Q ss_pred C--hhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 005642 252 F--LEHGKQVHGHACKVGVIDDVIVASALLDTY 282 (686)
Q Consensus 252 ~--~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 282 (686)
. ...+..+++.+.+.|+++....|..+.-..
T Consensus 195 ~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 195 QEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred hHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 2 346777888888888877777665544433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.28 Score=30.35 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=21.2
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 541 AYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998754
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.38 E-value=25 Score=38.79 Aligned_cols=46 Identities=7% Similarity=0.108 Sum_probs=27.4
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHH
Q 005642 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354 (686)
Q Consensus 309 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 354 (686)
++..+.+..+.+.+..+.+...+.++..|..++..+++.+..+...
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~ 756 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCY 756 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHH
Confidence 4455555666666666666666666666666666666665444333
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.27 E-value=15 Score=35.73 Aligned_cols=221 Identities=13% Similarity=0.099 Sum_probs=105.8
Q ss_pred CCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCH----HHHHHHHhhC--CCCCcchHHHHH
Q 005642 37 LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK----EKSLQLFNVM--PQKNDFSWNMLI 110 (686)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m--~~~~~~~~~~ll 110 (686)
.++.. +....+..+...|..+-...+..-...+|...-..-+.++...|+. ++++..+..+ ..++...-...+
T Consensus 34 d~d~~-vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~ 112 (280)
T PRK09687 34 DHNSL-KRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAI 112 (280)
T ss_pred CCCHH-HHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 44554 6666677777777644434333333456666667777777777763 4566666655 235544444444
Q ss_pred HHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccC-CHHH
Q 005642 111 SGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG-KMND 189 (686)
Q Consensus 111 ~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~ 189 (686)
.++...+.+.........+.+...-..++..+-...+.++++.|+.+....+..-+..+|...-...+.++.+.+ +.+.
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH
Confidence 444433111111111122222222223355555566666666665333333333333444444444444444432 1223
Q ss_pred HHHHHh-hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHH
Q 005642 190 ARRVFD-RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265 (686)
Q Consensus 190 A~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 265 (686)
+...+. .+..++..+....+.++.+.|+ ..|+..+-+..+.+. .....+.++...|+. ++...+..+.+
T Consensus 193 ~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 193 IREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 333333 3334555556666666666655 345555544444321 122344555555553 34555555444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.17 E-value=7.7 Score=32.13 Aligned_cols=66 Identities=12% Similarity=0.241 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 269 (686)
.....-+..+..+|+-+.-.++++++.+. -.+++.....+..+|.+.|+..++.+++.++.+.|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455677778888888888888887653 4678888888888999999999999998888888753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.38 Score=29.09 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
+|..+...+...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666666666
|
... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.11 E-value=5 Score=34.94 Aligned_cols=128 Identities=13% Similarity=0.038 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHH---HHH-
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQMP-FEADVGMW---SSI- 511 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~---~~l- 511 (686)
..|..-+. +++.+..++|+.-|..+.+ .|...- +-....+.......|+...|...|+++. ..|.+... ..|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lek-tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEK-TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 34444332 3456667777777777663 343331 2222333445566777777777777763 22221111 111
Q ss_pred -HHHHHhcCChhHHHHHHHHHHc-cCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 512 -LRGCVAHGDKGLGRKVAERMIE-LDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 512 -i~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
...+..+|.++......+.+-. -+|-....-..|+-+-++.|++.+|.++|..+.+
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1224456666665544443332 2333444556677777777777777777777664
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.41 E-value=18 Score=35.20 Aligned_cols=157 Identities=11% Similarity=0.026 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhchh-----HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 005642 406 ISTSLVDFYCKCGY-----DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480 (686)
Q Consensus 406 ~~~~li~~~~~~~~-----~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 480 (686)
+...|+.+|...+. +|..+++.+...... .+.++..-+..+.+.++.+++.+.+.+|+.. +.-....+..++
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~--~~~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS--VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh--cccccchHHHHH
Confidence 45556666666555 677777777544322 2444545556666688899999999999853 321223333333
Q ss_pred HHH---HhcCChHHHHHHHHhC---CCCCCHH-HHHH-HHH---HHHhcCC------hhHHHHHHHHHHc--cCCCCchh
Q 005642 481 DLF---ARAGCLNEAVNLIEQM---PFEADVG-MWSS-ILR---GCVAHGD------KGLGRKVAERMIE--LDPENACA 541 (686)
Q Consensus 481 ~~~---~~~g~~~~A~~~~~~~---~~~p~~~-~~~~-li~---~~~~~g~------~~~A~~~~~~~~~--~~p~~~~~ 541 (686)
..+ ... ....|...++.+ ...|... .... ++. .....++ ++....++....+ ..|-++.+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 333 332 234555555544 2333332 1111 111 1122222 3333333332222 22323222
Q ss_pred H---HHH----HHHHhhcCCcchHHHHHHHHH
Q 005642 542 Y---IQL----SSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 542 ~---~~l----~~~~~~~g~~~~a~~~~~~~~ 566 (686)
- .++ +..+.+.++|++|.++++...
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 222 334667889999999988544
|
It is also involved in sporulation []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.28 E-value=11 Score=32.58 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=71.5
Q ss_pred HHHHHHHH---HHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHH
Q 005642 438 ITFTAILS---ACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQMP-FEADVGMWSSIL 512 (686)
Q Consensus 438 ~~~~~ll~---~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~li 512 (686)
.+.+.|+. .-.+.++.+.+..++..+. -+.|. ...-..-+..+.+.|++.+|+.+|+++. -.|....-..|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 33444444 3456789999999999887 46674 3444444556788999999999999985 334444445555
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHH
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (686)
..|....+-..=.....++++..| ++. -..+...+....+...|...
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~~-d~~-a~~Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESGA-DPD-ARALVRALLARADLEPAHEA 131 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcCC-ChH-HHHHHHHHHHhccccchhhh
Confidence 555544333333444555666555 333 33455555555555555543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.24 E-value=19 Score=35.08 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=8.8
Q ss_pred CCchhHHHHHHHHHhCCC
Q 005642 332 KSLISWNSMIVGLSQNGS 349 (686)
Q Consensus 332 ~~~~~~~~li~~~~~~g~ 349 (686)
++...-...+.++.+.++
T Consensus 204 ~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD 221 (280)
T ss_pred CChHHHHHHHHHHHccCC
Confidence 444444445555555444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=90.06 E-value=11 Score=32.10 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=46.6
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCH
Q 005642 108 MLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187 (686)
Q Consensus 108 ~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 187 (686)
.++..+... +........++.+.+.+. .+...++.++..|++. +.....+.++. ..+.......+..|.+.+.+
T Consensus 12 ~vv~~~~~~--~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~-~~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 12 EVVELFEKR--NLLEELIPYLESALKLNS-ENPALQTKLIELYAKY-DPQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHhC--CcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH-CHHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 344444433 345566666666666653 5667788888888775 34444455542 23334444555556665555
Q ss_pred HHHHHHHhhc
Q 005642 188 NDARRVFDRT 197 (686)
Q Consensus 188 ~~A~~~~~~~ 197 (686)
+++.-++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 5555555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.95 E-value=6.1 Score=34.42 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=36.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHH-HHHHHHH--HHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 005642 212 YISNNEDTEALLLFHKMRRNGVLEDAS-TLASVLS--ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288 (686)
Q Consensus 212 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 288 (686)
..+.|+...|+..|++.-...-.|-.. -...|-. .+...|.++......+.+-..+.+.-...-..|.-+-.+.|++
T Consensus 104 ~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~ 183 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDF 183 (221)
T ss_pred HhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccch
Confidence 344555555555555554432222211 1111111 1234444554444444443333333333334444444455555
Q ss_pred hHHHHHHHhc
Q 005642 289 SDACKLFSEL 298 (686)
Q Consensus 289 ~~A~~~~~~~ 298 (686)
..|.+.|..+
T Consensus 184 a~A~~~F~qi 193 (221)
T COG4649 184 AKAKSWFVQI 193 (221)
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.87 E-value=13 Score=32.65 Aligned_cols=133 Identities=16% Similarity=0.114 Sum_probs=85.9
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHcc--CCHHHHHHHHhhcCCCChh
Q 005642 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC--GKMNDARRVFDRTTDTSSV 203 (686)
Q Consensus 126 ~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~ 203 (686)
+....+.+.+++|+...+..+++.+.+.|++..-..++.--.=+|.......+-.+... .-..-|.+++.++ ..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL----~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL----GT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh----hh
Confidence 34445567889999999999999999999998888887665545544444333222221 1134455555554 33
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 266 (686)
.+..++..+...|++-+|+++.+.....+ .++. ..++.+..+.+|...--.+++...+.
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKVD-SVPA---RKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCCH---HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57778888999999999999988753321 2222 33566666666665555555555443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.80 E-value=1.5 Score=41.99 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 505 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
..++..++..+...|+.+.+...++++++.+|-+...|..+..+|.+.|+...|+..++.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 445667888888999999999999999999999999999999999999999999999988876
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.79 E-value=1.3 Score=28.81 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRN 231 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 231 (686)
+|..+...|.+.|++++|+++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666777777777777777777664
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.67 E-value=0.55 Score=29.00 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
+|..|...|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366778888888888888888888554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.12 E-value=0.65 Score=27.95 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=25.4
Q ss_pred hhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
..+..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999887643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.09 E-value=17 Score=33.02 Aligned_cols=83 Identities=13% Similarity=0.061 Sum_probs=48.3
Q ss_pred HHhcCCcHHHHHHhccCC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC-cchHHHHHHHHHhcChhhHHHHHH
Q 005642 51 YMRCGNPTDALLLFDEMP--RR-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAKADLAALEYGKQ 126 (686)
Q Consensus 51 ~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~ll~~~~~~~~~~~~~a~~ 126 (686)
|-..|-..-|+--|.+.. .| -+..||-|.--+...|+++.|.+.|+...+-| ...|..+-++..----+++..|.+
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 333444455555554443 34 34678888888888899999999988887733 344555544443222245555554
Q ss_pred HHHHHHH
Q 005642 127 IHSHILV 133 (686)
Q Consensus 127 i~~~~~~ 133 (686)
-+...-+
T Consensus 155 d~~~fYQ 161 (297)
T COG4785 155 DLLAFYQ 161 (297)
T ss_pred HHHHHHh
Confidence 4444333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.57 E-value=20 Score=33.05 Aligned_cols=201 Identities=17% Similarity=0.168 Sum_probs=132.3
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHhhCCC-----CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005642 303 TILLNTMITVYSSCGRIEDAKHIFRTMPN-----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377 (686)
Q Consensus 303 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 377 (686)
...+......+...+.+..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 45666777778888888888777776542 2334566666677777777888888877776433331 11222222
Q ss_pred -HHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 005642 378 -ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456 (686)
Q Consensus 378 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 456 (686)
.+...|+++.+...+...... .|. .......+......+...++.+.+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~a 186 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL--DPE-----------------------------LNELAEALLALGALLEALGRYEEA 186 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCC-----------------------------ccchHHHHHHhhhHHHHhcCHHHH
Confidence 566777777777777766431 110 001122233333336677899999
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 457 QKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 457 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
...+..... .... ....+..+...+...++++.|...+.... ..|+ ...+..+...+...+..+.+...+.+...
T Consensus 187 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 187 LELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999998873 2223 46778888888999999999999988873 4454 44555555555577789999999999999
Q ss_pred cCCC
Q 005642 534 LDPE 537 (686)
Q Consensus 534 ~~p~ 537 (686)
..|.
T Consensus 265 ~~~~ 268 (291)
T COG0457 265 LDPD 268 (291)
T ss_pred hCcc
Confidence 8886
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.57 E-value=37 Score=36.06 Aligned_cols=123 Identities=10% Similarity=-0.006 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILR 513 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~ 513 (686)
+..+|...+..-...|+.+...-.|+...- ....-...|--.+.-....|+.+-|..++.... ..|+......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 446788888888899999999999988761 122235667777777777799998888887762 2233222222222
Q ss_pred -HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 514 -GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 514 -~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
.+-..|++..|..+++++.+-.|.....-..-+....+.|+.+.+..
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 23457899999999999998778776666666777888899988883
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.34 E-value=23 Score=33.38 Aligned_cols=178 Identities=12% Similarity=0.033 Sum_probs=84.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC-C-CcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 005642 207 SMISGYISNNEDTEALLLFHKMRRNG-V-LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284 (686)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 284 (686)
.=+..-.+.|++++|.+.|+.+.++. . +-...+...++-++.+.++++.|....++..+.-+.....-|...+.+++.
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~ 118 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY 118 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Confidence 33444556778888888888777642 1 113445555566666777777777777777765332222233333333332
Q ss_pred c-------CChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchh-H-HHHHHHHHhCCChhhHHH
Q 005642 285 R-------GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-W-NSMIVGLSQNGSPIEALD 355 (686)
Q Consensus 285 ~-------g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~li~~~~~~g~~~~A~~ 355 (686)
. .+...+...|..+. .++.-|=.+.=...|...+..+. |... + -.+..-|.+.|.+..|..
T Consensus 119 ~~~i~~~~rDq~~~~~A~~~f~--------~~i~ryPnS~Ya~dA~~~i~~~~--d~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 119 FFQIDDVTRDQSAARAAFAAFK--------ELVQRYPNSRYAPDAKARIVKLN--DALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred hccCCccccCHHHHHHHHHHHH--------HHHHHCCCCcchhhHHHHHHHHH--HHHHHHHHHHHHHHHHhcChHHHHH
Confidence 1 12222222222221 01110000000011111100000 0001 1 124456777777777777
Q ss_pred HHHHHHHCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHH
Q 005642 356 LFCNMNKLDLRMDK---FSLASVISACANISSLELGEQVFARV 395 (686)
Q Consensus 356 ~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~ 395 (686)
-+++|.+. .+-+. ..+-.+..+|...|-.++|.+.-.-+
T Consensus 189 R~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 189 RFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 77777765 22222 33445566666777666666554443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.13 E-value=8.2 Score=34.54 Aligned_cols=101 Identities=9% Similarity=-0.001 Sum_probs=73.5
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDPE-----IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAH 518 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~ 518 (686)
-+...|++++|..-|...... .++. ...|..-..++.+.+.++.|++-..+. .+.|. ...+..-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 356789999999999998842 2222 345666667888999999999887766 45553 33344445678888
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 005642 519 GDKGLGRKVAERMIELDPENACAYIQLSSI 548 (686)
Q Consensus 519 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 548 (686)
..+++|+.-|+++++.+|....+-...+.+
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999999999765554444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.12 E-value=2.9 Score=36.14 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=23.7
Q ss_pred hcCChHHHHHHHHhCC-CCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 485 RAGCLNEAVNLIEQMP-FEADVGMWSS-ILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 485 ~~g~~~~A~~~~~~~~-~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
+.++.+++..+++.+. ..|....... -...+...|++.+|+++++.+.+-.|..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~ 77 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF 77 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 3445555555555552 3343222211 1122344555555555555554444433
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=88.03 E-value=9.1 Score=29.89 Aligned_cols=82 Identities=11% Similarity=0.117 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHH
Q 005642 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355 (686)
Q Consensus 276 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 355 (686)
+.+.+.+...++.+++..+.+ +..+.+.|++++|..+.+.+..||...|.++-. .+.|..+++..
T Consensus 25 ~tIAdwL~~~~~~~E~v~lIR-------------lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~ 89 (115)
T TIGR02508 25 NTIADWLHLKGESEEAVQLIR-------------LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALES 89 (115)
T ss_pred HHHHHHHhcCCchHHHHHHHH-------------HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHH
Confidence 344555555555555555544 456778888888888888888888888877644 35666666666
Q ss_pred HHHHHHHCCCCCCHHHHH
Q 005642 356 LFCNMNKLDLRMDKFSLA 373 (686)
Q Consensus 356 ~~~~m~~~g~~p~~~t~~ 373 (686)
-+..|..+| .|...+|.
T Consensus 90 rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 90 RLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 666676664 44444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.94 E-value=33 Score=34.75 Aligned_cols=115 Identities=10% Similarity=0.013 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhCCC---C-C-----
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP---EIEHYSCMVDLFARAGCLNEAVNLIEQMPF---E-A----- 503 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~-p----- 503 (686)
...+|..++..+.+.|.++.|...+..+.. .+..+ .+.....-...+-..|+..+|+..++.... . +
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~-~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQ-LNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhc-cCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 456788888999999999999999998873 22111 344555566777788888888887765410 0 0
Q ss_pred --------------------C-------HHHHHHHHHHHHhc------CChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 504 --------------------D-------VGMWSSILRGCVAH------GDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 504 --------------------~-------~~~~~~li~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
+ ...+..+..-+... ++.+++...|+++.+..|....+|..++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0 01122222222233 66777888888888888877777777776654
Q ss_pred h
Q 005642 551 T 551 (686)
Q Consensus 551 ~ 551 (686)
+
T Consensus 304 ~ 304 (352)
T PF02259_consen 304 K 304 (352)
T ss_pred H
Confidence 4
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.93 E-value=2.6 Score=35.76 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=44.4
Q ss_pred HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
...++.+++..++..+.-+.|+.+..-..-++++...|+|++|.++++.+.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 357888888888888888888888877778888888899999999888777644
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.90 E-value=59 Score=37.65 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=43.6
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchH
Q 005642 481 DLFARAGCLNEAVNLIEQMPFEADVGM--WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558 (686)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 558 (686)
.+|..+|++.+|..+-.++...-|... -..|+.-+..+++.-+|-++..+... +| ......|++...|++|
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-d~------~~av~ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-DP------EEAVALLCKAKEWEEA 1045 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-CH------HHHHHHHhhHhHHHHH
Confidence 345556677777777766643333222 25566667777777777666666553 22 1233355566667777
Q ss_pred HHHHH
Q 005642 559 SLIRD 563 (686)
Q Consensus 559 ~~~~~ 563 (686)
.++..
T Consensus 1046 lrva~ 1050 (1265)
T KOG1920|consen 1046 LRVAS 1050 (1265)
T ss_pred HHHHH
Confidence 66544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.88 E-value=1.9 Score=41.56 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=69.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCh
Q 005642 445 SACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FE-ADVGMWSSILRGCVAHGDK 521 (686)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~li~~~~~~g~~ 521 (686)
.-|.+.|.+++|+.+|.... .+.| ++.++..-..+|.+..++..|..-..... +. .-...|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 35788999999999999876 5667 88888888999999988887776655542 11 0123355555555566889
Q ss_pred hHHHHHHHHHHccCCCCch
Q 005642 522 GLGRKVAERMIELDPENAC 540 (686)
Q Consensus 522 ~~A~~~~~~~~~~~p~~~~ 540 (686)
++|.+-++..++++|++..
T Consensus 182 ~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHhHHHHHhhCcccHH
Confidence 9999999999999998644
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.57 E-value=21 Score=32.06 Aligned_cols=90 Identities=12% Similarity=0.027 Sum_probs=54.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 005642 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQMPFEA-DVGMWSSILRGCVAH 518 (686)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~li~~~~~~ 518 (686)
...+...|++++|..-++... +.+.| ...--.|.......|.+++|+..++...-+. .......-.+.+...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l---~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k 172 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQAL---AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence 345667788888887777655 11112 1122345556667788888888777664211 122233445667777
Q ss_pred CChhHHHHHHHHHHccCC
Q 005642 519 GDKGLGRKVAERMIELDP 536 (686)
Q Consensus 519 g~~~~A~~~~~~~~~~~p 536 (686)
|+.++|+..|+++++..+
T Consensus 173 g~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 173 GDKQEARAAYEKALESDA 190 (207)
T ss_pred CchHHHHHHHHHHHHccC
Confidence 888888888888777654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.46 E-value=0.98 Score=27.25 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=25.6
Q ss_pred hhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.+|..++.+|...|++++|...+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468999999999999999999999888743
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.40 E-value=20 Score=39.43 Aligned_cols=62 Identities=19% Similarity=0.268 Sum_probs=36.1
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHhhc---CCCChhhHHHHHHHHHhcCCh-------hHHHHHHHHHHHC
Q 005642 170 DDFCLSALISGYANCGKMNDARRVFDRT---TDTSSVMWNSMISGYISNNED-------TEALLLFHKMRRN 231 (686)
Q Consensus 170 ~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~ 231 (686)
+....-.+|-.|.|+|++++|.++..+. .+.....+-..+..|+...+- +....-|++..+.
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 3344556777788888888888888332 223345666677777665321 3445556655544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.29 E-value=53 Score=36.44 Aligned_cols=179 Identities=12% Similarity=0.101 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCCCChh---hHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChh
Q 005642 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDF---CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219 (686)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 219 (686)
...-++.+++...++.|..+.+.-..+... ......+-+-+.|++++|...|-+-..--.. ..+|.-|....+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~Ik 414 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIK 414 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHH
Confidence 344556666767777777776654432111 2233344566788888888777654432111 12455666667777
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC-CCchHHHHHHHHHHHHhcCChhHHHHHHHhc
Q 005642 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 220 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 298 (686)
+-..+++.+.+.|+.-.. .-..|+.+|.+.++.++-.++.+... .| ..-|. ...+..+.+.+-.++|..+-...
T Consensus 415 nLt~YLe~L~~~gla~~d-httlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~---e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLANSD-HTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDV---ETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHcccccch-hHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeH---HHHHHHHHHhChHHHHHHHHHHh
Confidence 777888888888765433 33568888888888887777665543 22 11122 23445555556666665554433
Q ss_pred ccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC
Q 005642 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332 (686)
Q Consensus 299 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 332 (686)
.. .. ..+--.+-..+++++|.+.+..++-+
T Consensus 490 ~~-he---~vl~ille~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 490 KK-HE---WVLDILLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred cc-CH---HHHHHHHHHhcCHHHHHHHHhcCCHH
Confidence 22 11 12233345577888888888888753
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.14 E-value=30 Score=33.96 Aligned_cols=130 Identities=10% Similarity=0.157 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--c----CChHHHHHHHHHHHHhCCC---cchhHHHHHHHHHHhchh--
Q 005642 351 IEALDLFCNMNKLDLRMDKFSLASVISACAN--I----SSLELGEQVFARVTIIGLD---SDQIISTSLVDFYCKCGY-- 419 (686)
Q Consensus 351 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~-- 419 (686)
++.+.+++.|.+.|++-+..+|......... . .....+..+|+.|.+.-.- ++-..+..|+..-...-+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l 158 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHH
Confidence 3455778888888888887776653333222 1 2345666777777664321 223333333333111111
Q ss_pred --HHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCC--HHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005642 420 --DALALFNEMRNTGVKPTI--ITFTAILSACDHCGL--VKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481 (686)
Q Consensus 420 --~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 481 (686)
.+..+|+.+.+.|+..+- .....++..+..... ..++.++++.+. +.++++....|..++-
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHHH
Confidence 555666666666654432 222223322222111 345666666666 3466666555554443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=87.10 E-value=54 Score=36.35 Aligned_cols=310 Identities=7% Similarity=-0.041 Sum_probs=142.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC-CCchHHHHHHHHHHHHhcCChh
Q 005642 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPS 289 (686)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~ 289 (686)
-..+.|++..+.++...+...-+ ..-..|..+..... ...+++...+ +.+.. .+.....-......+.+.++++
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~F---l~~~~~~P~~~~Lr~~~l~~La~~~~w~ 116 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNF---IRANPTLPPARSLQSRFVNELARREDWR 116 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHH---HHHCCCCchHHHHHHHHHHHHHHccCHH
Confidence 34567888888777776642211 11222322222111 1234433333 33332 2223334455555666778888
Q ss_pred HHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCC
Q 005642 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP---NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366 (686)
Q Consensus 290 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 366 (686)
.... |..-.+.+...-.....+....|+.++|......+= ...+..++.++..+.+.|...... ++.+|...-..
T Consensus 117 ~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~ 194 (644)
T PRK11619 117 GLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKA 194 (644)
T ss_pred HHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHC
Confidence 7777 332224455555667778888888777766555542 234677888888888777665443 33333221111
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHH---------hCCCcchhHHHHHHHHHHhc---hh-HHHHHHHHHHHCC-
Q 005642 367 MDKFSLASVISACANISSLELGEQVFARVTI---------IGLDSDQIISTSLVDFYCKC---GY-DALALFNEMRNTG- 432 (686)
Q Consensus 367 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~li~~~~~~---~~-~A~~~~~~m~~~~- 432 (686)
.+......+..... .+.-..+.... .+.+ ..++++...-..++.++.+. +. .|..++.......
T Consensus 195 ~~~~lA~~l~~~l~-~~~~~~a~a~~-al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~ 272 (644)
T PRK11619 195 GNTGLVTYLAKQLP-ADYQTIASALI-KLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQK 272 (644)
T ss_pred CCHHHHHHHHHhcC-hhHHHHHHHHH-HHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcC
Confidence 22222222222221 11000111111 1110 11112221111122222221 11 6666666653332
Q ss_pred CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHH
Q 005642 433 VKPTI--ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMW 508 (686)
Q Consensus 433 ~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~ 508 (686)
+.+.. ..+..+.......+..+++...++... ....+......-+..-.+.++++.+...+..|+ ..-...-.
T Consensus 273 ~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~---~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~ 349 (644)
T PRK11619 273 LNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI---MRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWR 349 (644)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc---cccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhH
Confidence 22222 223333322333222445555555433 111244444445555557777777777777774 11122223
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 005642 509 SSILRGCVAHGDKGLGRKVAERMI 532 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~~~~ 532 (686)
--+..++...|+.++|...|+++.
T Consensus 350 YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 350 YWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 334555556777777777777764
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.01 E-value=10 Score=33.99 Aligned_cols=95 Identities=15% Similarity=0.070 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHccCChhhHHHHHHHHHHcCCC---chH----H
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA--STLASVLSACSSLGFLEHGKQVHGHACKVGVI---DDV----I 273 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~~----~ 273 (686)
..+..+...|.+.|+.++|++.|.++++....|.. ..+..+++.+...+++..+.....++...--. .+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35777788888888888888888888776544443 34566777777777887777776665543211 111 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 274 VASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 274 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
+|..| .+...+++..|-+.|-+..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 12221 2234566776666665443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.85 E-value=1.4 Score=42.55 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=74.8
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcch
Q 005642 480 VDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557 (686)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 557 (686)
+.-|.++|.+++|++.|... ...| +++++..-..+|.+...+..|+.-...++.++-....+|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 45678999999999999876 4667 888888889999999999999999999998887777778888888888888888
Q ss_pred HHHHHHHHHhc
Q 005642 558 SSLIRDIMREK 568 (686)
Q Consensus 558 a~~~~~~~~~~ 568 (686)
|.+=++...+.
T Consensus 184 AKkD~E~vL~L 194 (536)
T KOG4648|consen 184 AKKDCETVLAL 194 (536)
T ss_pred HHHhHHHHHhh
Confidence 88877766653
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.56 E-value=27 Score=32.32 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=37.0
Q ss_pred HHHHHhcCChHHHHHHHHhCC---CCCCHHHHH-----HHHHHH-HhcCChhHHHHHHHHHHccCCCCch
Q 005642 480 VDLFARAGCLNEAVNLIEQMP---FEADVGMWS-----SILRGC-VAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~-----~li~~~-~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
.+.-...+++.+|+++|++.. ...+..-|. .-...| ....|.-.+...+++..+++|.-..
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 333456788889999988872 222222221 111222 2347778888889999999997433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.50 E-value=1.5 Score=37.69 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=24.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHH
Q 005642 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261 (686)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 261 (686)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444445555555555555544333344444455555555544444444433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.44 E-value=4.8 Score=38.63 Aligned_cols=72 Identities=14% Similarity=0.321 Sum_probs=44.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCcCHHHHHHHH
Q 005642 173 CLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRR-----NGVLEDASTLASVL 244 (686)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll 244 (686)
++..++..+...|+++.+.+.++++.. -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 445556666666777777776666554 2455677777777777777777777776654 35555555443333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.87 E-value=0.77 Score=27.92 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=14.7
Q ss_pred CC-ChhHHHHHHHHHHhcCChHHHH
Q 005642 470 DP-EIEHYSCMVDLFARAGCLNEAV 493 (686)
Q Consensus 470 ~p-~~~~~~~l~~~~~~~g~~~~A~ 493 (686)
.| +...|..+..+|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34 4666666666666666666654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.83 E-value=1.1e+02 Score=38.61 Aligned_cols=307 Identities=8% Similarity=0.015 Sum_probs=155.2
Q ss_pred HHHHHccCChhhHHHHHHHHHHcC--CCchHHHHHHHHHHHHhcCChhHHHHHHHh-cccCCchhHHHHHHHHHhCCCHH
Q 005642 244 LSACSSLGFLEHGKQVHGHACKVG--VIDDVIVASALLDTYSKRGMPSDACKLFSE-LKVYDTILLNTMITVYSSCGRIE 320 (686)
Q Consensus 244 l~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~ 320 (686)
..+-.+.+.+..|...++.-.... -......+..+...|..-+++|...-+... ...+ ....-|-.....|+++
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHH
Confidence 334445667777777776621100 011233444455577777777776666552 2222 2233445566778888
Q ss_pred HHHHHHhhCCCCC---chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCChHHHHHHHHHHH
Q 005642 321 DAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV-ISACANISSLELGEQVFARVT 396 (686)
Q Consensus 321 ~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~ 396 (686)
.|...|+.+...+ +.+++-++......|.++..+...+-.... ..+....++.+ +.+--+.++++.....+.
T Consensus 1467 da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 8888888887633 346776666666677777666654444332 22333333322 233345666666555544
Q ss_pred HhCCCcchhHHHH--HHHHHHhchh----HHHHHHHHHHHC--------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 005642 397 IIGLDSDQIISTS--LVDFYCKCGY----DALALFNEMRNT--------GVKPT-IITFTAILSACDHCGLVKEGQKWFD 461 (686)
Q Consensus 397 ~~~~~~~~~~~~~--li~~~~~~~~----~A~~~~~~m~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 461 (686)
+. +...|.+ +.....+... .-.+.++.+.+. +..-+ ...|..++....-.. +-.
T Consensus 1543 ~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-------l~~ 1611 (2382)
T KOG0890|consen 1543 DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-------LEN 1611 (2382)
T ss_pred cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-------HHH
Confidence 11 1112221 1222211111 111222222211 11100 012333322221111 000
Q ss_pred HHHHhcCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChhHHHH
Q 005642 462 AMKWQYHIDPE------IEHYSCMVDLFARAGCLNEAVNLIEQM----PFEAD-----VGMWSSILRGCVAHGDKGLGRK 526 (686)
Q Consensus 462 ~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~li~~~~~~g~~~~A~~ 526 (686)
......+..++ ..-|..-+..-....+..+-+-.+++. ...|+ ..+|-...+.++..|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 01111223332 112222222111122222222222222 12222 5678899999999999999999
Q ss_pred HHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 527 VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 527 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
.+-++.+..+ +.++...+..++..|+-..|..++++..+...
T Consensus 1692 all~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1692 ALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9988888764 45789999999999999999999998886543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.46 E-value=10 Score=34.26 Aligned_cols=80 Identities=11% Similarity=0.026 Sum_probs=52.0
Q ss_pred HHHhchh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCh
Q 005642 413 FYCKCGY-DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI--DPEIEHYSCMVDLFARAGCL 489 (686)
Q Consensus 413 ~~~~~~~-~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~ 489 (686)
.+.+.|+ .|.+.|-.+...+.--++.....|...|. ..+.++++.++.+..+...- .+|++.+..|+..+.+.|++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 3445454 67777777776665556666666665555 56677777777776543222 35677777888888777777
Q ss_pred HHHH
Q 005642 490 NEAV 493 (686)
Q Consensus 490 ~~A~ 493 (686)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7764
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.75 E-value=2 Score=27.16 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
++.+...|...|++++|+.+++++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 34444444444444444444444433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.72 E-value=1.7 Score=25.79 Aligned_cols=25 Identities=8% Similarity=0.208 Sum_probs=12.3
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 543 IQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
..++.++.+.|++++|.++++++.+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444445555555555555554444
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=84.50 E-value=50 Score=33.62 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=79.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI-EHYSCMVDLFARAG---CLNEAVNLIEQMPFEADVGMWSSILRGC 515 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~li~~~ 515 (686)
...-+....+.|+.+++..+-......+...|-. ..+..+...+.+.+ ..+.-..++..|.-.-....|-.+...-
T Consensus 188 LRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~A 267 (421)
T PRK12798 188 LRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAA 267 (421)
T ss_pred HHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 3444456678899999888877777666666633 33333344444333 3455555666664223466788888889
Q ss_pred HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhh-----cCCcchHHHHHHHHH
Q 005642 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT-----SGEWEKSSLIRDIMR 566 (686)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~ 566 (686)
...|+.+.|....+++..+... ...-...+..|.. ..+++++.+.++.+-
T Consensus 268 li~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 268 LIDGKTELARFASERALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 9999999999999999997643 2223344444432 345666666655443
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=83.86 E-value=42 Score=32.27 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=25.7
Q ss_pred ccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH----HHCCCCcCHHHHHHHHHHHH
Q 005642 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM----RRNGVLEDASTLASVLSACS 248 (686)
Q Consensus 183 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~ 248 (686)
+.+++++|.+++.. =...+.+.|+...|-++-.-+ .+.++++|......++..+.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~ 60 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELIS 60 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45666666665432 234556677766655544333 33455555555444544444
|
; PDB: 3LKU_E 2WPV_G. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.71 E-value=2.6 Score=36.21 Aligned_cols=88 Identities=11% Similarity=0.175 Sum_probs=65.8
Q ss_pred HHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCH
Q 005642 9 ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK 88 (686)
Q Consensus 9 ~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 88 (686)
..+++.+...+.+.....+.+.+...+...++. ..+.++..|++.++.+....+++.... .-...++..+.+.|.+
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~-~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPD-LHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHH-HHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHH-HHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchH
Confidence 346677777888889999999999877666676 999999999999988999998884443 3334566667777777
Q ss_pred HHHHHHHhhCCC
Q 005642 89 EKSLQLFNVMPQ 100 (686)
Q Consensus 89 ~~A~~~~~~m~~ 100 (686)
++|.-+|.++..
T Consensus 87 ~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 87 EEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHccc
Confidence 777777777644
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.68 E-value=5.8 Score=38.15 Aligned_cols=64 Identities=13% Similarity=0.139 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
..+.+-.++.+.++++.|+++.+.++.+.|+++.-+..-+-+|.+.|.+..|..=++.-.++.+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 3566777789999999999999999999999998888999999999999999998888877654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.63 E-value=1.5 Score=26.04 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
+-.+..++.+.|+.++|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3456778889999999999999999999963
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.40 E-value=20 Score=28.22 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005642 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481 (686)
Q Consensus 420 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 481 (686)
+..+-+..+....+.|++....+.+.+|.+.+++..|.++|+..+.+.+. ....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHH
Confidence 44555666666778899999999999999999999999999988865443 3336766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.30 E-value=79 Score=34.99 Aligned_cols=176 Identities=14% Similarity=0.082 Sum_probs=99.6
Q ss_pred HHHHHHHHHHH-cCCCCC--hhHHHHHHHHHH-hcCChHHHHHHHhccCC----CChh-----hHHHHHHHHHccCCHHH
Q 005642 123 YGKQIHSHILV-NGLDFD--SVLGSSLVNLYG-KCGDFNSANQVLNMMKE----PDDF-----CLSALISGYANCGKMND 189 (686)
Q Consensus 123 ~a~~i~~~~~~-~g~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~----~~~~-----~~~~li~~~~~~g~~~~ 189 (686)
.|.+.++.+.+ ..++|. ..++-.+...+. ...+++.|+..+++... ++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34445555553 333333 335666667666 57889999999887642 2211 1224455666666665
Q ss_pred HHHHHhhcCCC----Ch----hhHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCcCHHHHHHHHHHHH--ccCChhh
Q 005642 190 ARRVFDRTTDT----SS----VMWNSM-ISGYISNNEDTEALLLFHKMRRNG---VLEDASTLASVLSACS--SLGFLEH 255 (686)
Q Consensus 190 A~~~~~~~~~~----~~----~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~--~~~~~~~ 255 (686)
|...+++..+. .. ..+..+ +..+...+++..|++.++.....- ..|-...+..++.+.. +.+..+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 88887765431 11 122223 223333478999999998876532 3444555556666654 4455666
Q ss_pred HHHHHHHHHHcC---------CCchHHHHHHHHHHHH--hcCChhHHHHHHHhcc
Q 005642 256 GKQVHGHACKVG---------VIDDVIVASALLDTYS--KRGMPSDACKLFSELK 299 (686)
Q Consensus 256 a~~~~~~~~~~g---------~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 299 (686)
+.+....+.... ..|...++..+++.++ ..|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666553322 1345566666666544 5677777777666554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.92 E-value=35 Score=30.66 Aligned_cols=88 Identities=13% Similarity=-0.031 Sum_probs=58.8
Q ss_pred HHHHHHHhcCChhHHHHHHHhcc-cCCch-----hHHHHHHHHHhCCCHHHHHHHHhhCCCCCchh--HHHHHHHHHhCC
Q 005642 277 ALLDTYSKRGMPSDACKLFSELK-VYDTI-----LLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS--WNSMIVGLSQNG 348 (686)
Q Consensus 277 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g 348 (686)
.+...+..+|++++|...++... .+... .--.|.+.....|.+|+|+..++....++-.. ...-...+...|
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg 173 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcC
Confidence 34556677788888887777655 22222 22345567777888888888888777764433 333456778888
Q ss_pred ChhhHHHHHHHHHHCC
Q 005642 349 SPIEALDLFCNMNKLD 364 (686)
Q Consensus 349 ~~~~A~~~~~~m~~~g 364 (686)
+-++|..-|.+..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888887764
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.91 E-value=8.1 Score=35.05 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
||-+.--+...|+++.|.+.|+..++++|...-+..+-+-.+.-.|+++-|.+
T Consensus 102 fNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 102 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred HHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 33333333444555555555555555555443333333334444444444444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.88 E-value=1.8 Score=27.44 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=24.4
Q ss_pred hhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 540 CAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.++..++.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4688999999999999999999998875
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.60 E-value=11 Score=38.29 Aligned_cols=85 Identities=14% Similarity=0.045 Sum_probs=36.7
Q ss_pred HHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 483 FARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
+...|+++.+...+.... +.....+..+++...-..|+.++|....+-++..+-+++.+....+..-...|-++++.-
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 344455555555444442 222333444444444444555555555554444333333322222222333444455555
Q ss_pred HHHHHHh
Q 005642 561 IRDIMRE 567 (686)
Q Consensus 561 ~~~~~~~ 567 (686)
.++++..
T Consensus 413 ~wk~~~~ 419 (831)
T PRK15180 413 YWKRVLL 419 (831)
T ss_pred HHHHHhc
Confidence 5554443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.60 E-value=12 Score=33.52 Aligned_cols=98 Identities=11% Similarity=-0.032 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhH
Q 005642 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220 (686)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 220 (686)
..+..+...|++.|+.+.|.+.|.++.+.... .... ...+-.+|+.....+++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~------------------------id~~l~~irv~i~~~d~~~ 91 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHK------------------------IDMCLNVIRVAIFFGDWSH 91 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHH------------------------HHHHHHHHHHHHHhCCHHH
Confidence 34666677777777777777777666542211 1111 3345667777777778877
Q ss_pred HHHHHHHHHHCCCC---cCHHHHHHHHHH--HHccCChhhHHHHHHHH
Q 005642 221 ALLLFHKMRRNGVL---EDASTLASVLSA--CSSLGFLEHGKQVHGHA 263 (686)
Q Consensus 221 A~~~~~~m~~~g~~---p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~ 263 (686)
+...+.+....--. ++...-..+..+ +...+++..|-+.|-..
T Consensus 92 v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 92 VEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 77777666543212 222221122222 23457777777766554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=82.26 E-value=60 Score=32.81 Aligned_cols=62 Identities=10% Similarity=0.025 Sum_probs=42.2
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHhhcCCC-------ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005642 169 PDDFCLSALISGYANCGKMNDARRVFDRTTDT-------SSVMWNSMISGYISNNEDTEALLLFHKMRR 230 (686)
Q Consensus 169 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 230 (686)
....+|..+...+-+.|+++.|...+.++.+. .+...-.-+..+-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33456777777778888888888777766542 234444556666677888888888777766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.06 E-value=50 Score=31.76 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+.....|..+|.+.+|.++.++.+.++|-+...+..+..++...|+--.|.+-+..+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33445688999999999999999999999999999999999999998888887776654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.05 E-value=2.6 Score=25.27 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=25.8
Q ss_pred hhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 540 CAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988764
|
... |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=81.08 E-value=54 Score=31.55 Aligned_cols=28 Identities=21% Similarity=0.070 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHhc
Q 005642 271 DVIVASALLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 271 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 298 (686)
++.....+...|.+.|++.+|+..|-.-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 5556666667777777777777666543
|
; PDB: 3LKU_E 2WPV_G. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.00 E-value=12 Score=29.05 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005642 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481 (686)
Q Consensus 420 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 481 (686)
++.+-+..+......|++....+.+.+|.+.+++..|.++|+..+.+.+. +...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44555566666678888888888999999999999999999877644332 4445655543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.00 E-value=8.3 Score=34.80 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=51.5
Q ss_pred HhcCChHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC----CchhHHHHHHHHhhcCCcc
Q 005642 484 ARAGCLNEAVNLIEQMPFEA---DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE----NACAYIQLSSIFATSGEWE 556 (686)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~ 556 (686)
.+.|+ ++|.+.|-.+...| ++.....+ ..|....|.+++++++-+++++.+. ++..+..|++++.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 55677666664333 34444444 4444577899999999999985432 5788999999999999998
Q ss_pred hHHH
Q 005642 557 KSSL 560 (686)
Q Consensus 557 ~a~~ 560 (686)
.|--
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 8753
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.68 E-value=1.9 Score=24.18 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=16.0
Q ss_pred hHHHHHHHHhhcCCcchHHHHHH
Q 005642 541 AYIQLSSIFATSGEWEKSSLIRD 563 (686)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~ 563 (686)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777777777777777654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.58 E-value=17 Score=38.34 Aligned_cols=130 Identities=20% Similarity=0.173 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH
Q 005642 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 221 (686)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 221 (686)
..+.++..+-+.|..++|+++-. +|| .-.....+.|+++.|.++..+. .+..-|..|..+....+++..|
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~---D~d-----~rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA 685 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELST---DPD-----QRFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLA 685 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCC---Chh-----hhhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhH
Confidence 34444455555555555544321 121 1122334555666655554332 2244566666666666666666
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHH
Q 005642 222 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296 (686)
Q Consensus 222 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 296 (686)
.+.|.+... |..|+-.+...|+-+....+-....+.|.. | .-..+|...|+++++.+++.
T Consensus 686 ~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 686 SECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHHHH
Confidence 666665543 334555555555555444444444444321 1 12233444555555555443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.22 E-value=6.3 Score=35.76 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 475 HYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
+....++.+.+.+.+.+|+...+.- +.+| |...-..+++.++-.|++++|..-++-+-++.|++..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 3445566778888999999887665 5566 4555667888899999999999999988888887544
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=80.06 E-value=3.9 Score=23.33 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
|..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444445555555555555555555444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 5e-10
Identities = 118/731 (16%), Positives = 204/731 (27%), Gaps = 215/731 (29%)
Query: 18 HHSIHVG---KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
HH H+ + + K IL+ C + D ++ S
Sbjct: 2 HHHHHMDFETGEHQYQY--KDILSVFEDAFVDNFD----CKDVQDMP--------KSILS 47
Query: 75 WNAMIEGFMKLGH-KEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILV 133
I+ + +L+LF + K + + + + Y L+
Sbjct: 48 -KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-----YK------FLM 95
Query: 134 NGLDFDSVLGSSLVNLYGKCGD--FNSANQVLNMM--KEPDDF-----CLSAL------- 177
+ + + S + +Y + D +N NQV + L L
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYND-NQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 178 ISGYANCGK---MNDARRVFDRTTDTS-SVMWNSMISGYISNNEDTEALL-----LFHKM 228
I G GK D + + W ++ + N E +L L +++
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---LN--LKNCNSPETVLEMLQKLLYQI 209
Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
N + L S L + + + V+ +V + +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---------QNAKAW- 259
Query: 289 SDA----CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 344
+A CK ILL T + A IS + + L
Sbjct: 260 -NAFNLSCK----------ILL---TTRFKQVTDFLSAATTTH-------ISLDHHSMTL 298
Query: 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS-- 402
+ P E L L L + L + A GL +
Sbjct: 299 T----PDEVKSLLLKY----LDCRPQDLPR--EVLT-TNPRRLS--IIAESIRDGLATWD 345
Query: 403 ----------DQIISTSLVDF----YCKCGYDALALFNEMRNTGVKPTIITFTAILSACD 448
II +SL Y K +D L++F I T +LS
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPP----SAH---IP-TILLS--- 393
Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
+ W I ++ +V+ + L+E+ P E+ + +
Sbjct: 394 --------------LIWFDVIKSDVMV---VVNKLHKYS-------LVEKQPKESTISIP 429
Query: 509 SSILRGCV-AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
S L V + L R + + Y +I T + D
Sbjct: 430 SIYLELKVKLENEYALHRSIVDH-----------Y----NIPKTFDSDDLIPPYLDQYFY 474
Query: 568 KHVGK-LPGCSWADGIA-FNCWFLDTMFLQLANFDEIKQHQSADFCDYIHGFDQARLPLS 625
H+G L + + F FLD FL + ++
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFL------------------------EQKIRHD 510
Query: 626 SKRSFVLGYLLSTLS-LKVVYSNLCSSLVVPTRNELAYL---------LIRMVYGNILTI 675
S G +L+TL LK +C + R A L LI Y ++L I
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 676 ALLLLANNGGL 686
A L+A + +
Sbjct: 571 A--LMAEDEAI 579
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.1 bits (128), Expect = 2e-07
Identities = 34/311 (10%), Positives = 86/311 (27%), Gaps = 36/311 (11%)
Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
+ R + + ++G + R+ LA +L
Sbjct: 56 EFKALTRRLQVEPRLLSKQMAGCLE-----------DCTRQAPESPWEEQLARLLQEAPG 104
Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK-------VYD 302
L+ + G + + A A L +
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEAL-DLF 357
+ N ++ ++ G ++ ++ + + L +S+ + + + + +
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCK 416
M++ L++ A ++S + L+ +V ++ L S L D Y K
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
Query: 417 CGYDALALFNEMRNTGVKPTII-------TFTAILSACDHCGLVKEGQKWFDAMK----- 464
G + + T + ++S KE + +K
Sbjct: 285 DGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQ 344
Query: 465 WQYHIDPEIEH 475
W+ + +
Sbjct: 345 WEKALCRALRE 355
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.5 bits (124), Expect = 4e-07
Identities = 30/306 (9%), Positives = 76/306 (24%), Gaps = 22/306 (7%)
Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNG----SPIEALDLFCNMNKLDLRMDKFSLASVI 376
A + W + L Q S ++ L + L +
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 377 SACANISSLELGEQVFARV---TIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNT 431
C L L + + +++ + + G + + + +++
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 432 GVKPTIITFTAILSACDHCGLVKEG-QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
G+ P ++++ A L ++ + M Q + + + ++ RA L
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLK 253
Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550
+ + + + K + + L QL
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQL----- 308
Query: 551 TSGEWEKSSLIRDIMREKHVGKLPGCSWADGIA---FNCWFLDTMFLQLANFDEIKQHQS 607
E +S + + EK A + W + +++
Sbjct: 309 ---HMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVY 365
Query: 608 ADFCDY 613
Sbjct: 366 EGRFSL 371
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.9 bits (112), Expect = 1e-05
Identities = 15/142 (10%), Positives = 40/142 (28%), Gaps = 8/142 (5%)
Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-------VMWNSMISGYISNNEDTE 220
L A ++ A + M+N+++ G+ E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLG-FLEHGKQVHGHACKVGVIDDVIVASALL 279
+ + ++ G+ D + A+ L ++ + G+ + + LL
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 280 DTYSKRGMPSDACKLFSELKVY 301
+ + K+ +
Sbjct: 244 SEEDRATVLKAVHKVKPTFSLP 265
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 686 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.68 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.66 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.53 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.46 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.45 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.45 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.44 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.44 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.44 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.44 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.43 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.42 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.42 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.41 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.39 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.37 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.35 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.34 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.32 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.29 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.26 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.25 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.25 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.24 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.23 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.18 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.18 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.18 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.17 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.17 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.15 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.11 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.09 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.05 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.03 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.01 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.92 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.89 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.85 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.85 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.84 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.84 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.81 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.81 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.78 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.74 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.74 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.72 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.72 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.71 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.71 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.69 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.69 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.69 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.68 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.68 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.67 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.65 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.61 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.59 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.57 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.56 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.55 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.54 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.52 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.52 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.52 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.51 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.5 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.5 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.49 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.45 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.45 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.44 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.44 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.43 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.43 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.42 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.39 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.38 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.37 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.37 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.36 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.34 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.33 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.32 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.32 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.31 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.31 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.31 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.31 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.29 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.28 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.27 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.27 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.23 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.22 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.2 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.19 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.19 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.17 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.17 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.16 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.15 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.14 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.13 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.1 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.08 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.07 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.07 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.07 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.07 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.06 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.06 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.04 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.04 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.03 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.03 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.03 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.02 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.0 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.97 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.95 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.93 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.92 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.91 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.86 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.83 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.78 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.77 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.77 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.76 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.75 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.74 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.73 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.67 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.66 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.57 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.57 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.56 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.54 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.51 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.37 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.33 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.27 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.18 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.16 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.11 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.98 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.95 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.93 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.89 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.89 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.78 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.76 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.76 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.7 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.25 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.13 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.09 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.9 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.84 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.82 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.54 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.37 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.22 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.12 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.11 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.82 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.55 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.74 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.63 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.14 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.09 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.6 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.36 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.1 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.86 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.6 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.49 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.91 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.27 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.13 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.65 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.96 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.18 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 85.43 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.37 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.17 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.12 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.39 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 84.02 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.75 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.24 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.16 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 81.33 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.3 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-40 Score=359.62 Aligned_cols=477 Identities=8% Similarity=-0.045 Sum_probs=363.6
Q ss_pred HHHhcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcChhhHHHHHHH
Q 005642 50 MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKADLAALEYGKQI 127 (686)
Q Consensus 50 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~~~a~~i 127 (686)
.+.+.|.+..+...|+.++.+++..|+.++..+.+.|++++|+.+|++|.. |+..++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-------------------- 121 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-------------------- 121 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHH--------------------
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHH--------------------
Confidence 345667777788888888878888888888888888888888888888743 4444444
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccC--CCChhhHHHHHHHHHccCCHHHHHHHHhhcCC------
Q 005642 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK--EPDDFCLSALISGYANCGKMNDARRVFDRTTD------ 199 (686)
Q Consensus 128 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------ 199 (686)
.++.+|.+.|++++|..+|+++. .++..+++.++.+|.+.|++++|.++|+++..
T Consensus 122 -----------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 184 (597)
T 2xpi_A 122 -----------------WLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEK 184 (597)
T ss_dssp -----------------HHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----
T ss_pred -----------------HHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccc
Confidence 44444555555555555555442 24444455555555555555555555543222
Q ss_pred -------------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhH--HHH-HHHH
Q 005642 200 -------------TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG--KQV-HGHA 263 (686)
Q Consensus 200 -------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a--~~~-~~~~ 263 (686)
.+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..+...+...+..+.+ ..+ +..+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 263 (597)
T 2xpi_A 185 NANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY 263 (597)
T ss_dssp ------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHH
T ss_pred ccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCccc
Confidence 247899999999999999999999999998853 22444555555444333222211 111 4444
Q ss_pred HHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhccc--CCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHH
Q 005642 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV--YDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWN 338 (686)
Q Consensus 264 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 338 (686)
...+..+...+|+.++..|.+.|++++|.++|+++.. ++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 343 (597)
T 2xpi_A 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYP 343 (597)
T ss_dssp HGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHH
T ss_pred ccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHH
Confidence 5555555666778888999999999999999999885 7889999999999999999999999998863 4678999
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhch
Q 005642 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418 (686)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 418 (686)
.++.++.+.|++++|..+|+++.+. .+.+..++..++..+.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999865 35578889999999999999999999999998864 456789999999999999
Q ss_pred h--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005642 419 Y--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496 (686)
Q Consensus 419 ~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (686)
+ +|+++|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|
T Consensus 422 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 498 (597)
T 2xpi_A 422 EHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHF 498 (597)
T ss_dssp CHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8 99999999987653 47789999999999999999999999999842 2337899999999999999999999999
Q ss_pred HhC-------CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 497 EQM-------PFEAD--VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 497 ~~~-------~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+++ +..|+ ..+|..++.+|.+.|++++|+..++++++..|+++.+|..++.+|...|++++|.++++++.+
T Consensus 499 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 499 QNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 988 34677 789999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 005642 568 KH 569 (686)
Q Consensus 568 ~~ 569 (686)
..
T Consensus 579 ~~ 580 (597)
T 2xpi_A 579 IS 580 (597)
T ss_dssp HC
T ss_pred cC
Confidence 54
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-38 Score=343.98 Aligned_cols=473 Identities=9% Similarity=0.005 Sum_probs=374.4
Q ss_pred CCchhhHHHHHHHHHhcCCcHHHHHHhccCC--CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHh
Q 005642 38 NSTLPIANRLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK 115 (686)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~ 115 (686)
++.. .++.++..|.+.|++++|..+|+++. .|+..+|..++.+|.+.|++++|+.+|+++..
T Consensus 82 ~~~~-~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------- 145 (597)
T 2xpi_A 82 SRED-YLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--------------- 145 (597)
T ss_dssp CHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---------------
T ss_pred HHHH-HHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---------------
Confidence 4555 89999999999999999999999996 47888999999999999999999999998853
Q ss_pred cChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCC-------------------ChhhHHH
Q 005642 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP-------------------DDFCLSA 176 (686)
Q Consensus 116 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~ 176 (686)
.+++..+++.++.+|.+.|++++|+++|+++... +..+|+.
T Consensus 146 --------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (597)
T 2xpi_A 146 --------------------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYL 205 (597)
T ss_dssp --------------------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHH
T ss_pred --------------------cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHH
Confidence 1345667777788888888888888888754432 3677888
Q ss_pred HHHHHHccCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChhHHHH--H-HHHHHHCCCCcCHHHHHHHHHHHHcc
Q 005642 177 LISGYANCGKMNDARRVFDRTTDT---SSVMWNSMISGYISNNEDTEALL--L-FHKMRRNGVLEDASTLASVLSACSSL 250 (686)
Q Consensus 177 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~~~~~ll~~~~~~ 250 (686)
++.+|.+.|++++|.+.|+++.+. +...|..+...+...+..+.+.. + +..+...+..+...+|..++..|.+.
T Consensus 206 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc
Confidence 888888888888888888877642 34455555554443332222211 1 44555444445555666667777788
Q ss_pred CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHh
Q 005642 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFR 327 (686)
Q Consensus 251 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 327 (686)
|++++|.++++++.+. +++..+++.++.+|.+.|++++|..+|+++. +.+..+++.++.++.+.|++++|..+++
T Consensus 286 g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp HHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888887765 4678888888888888888888888888776 3466778888888888888888888888
Q ss_pred hCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcch
Q 005642 328 TMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404 (686)
Q Consensus 328 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 404 (686)
++.+ .+..+|+.++..|.+.|++++|.++|+++.+. .+.+..++..++.++.+.|++++|.++|+++.+.+ +.+.
T Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 441 (597)
T 2xpi_A 364 DLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTH 441 (597)
T ss_dssp HHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCS
T ss_pred HHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch
Confidence 7753 35677888888888888888888888888764 23356788888888888888888888888887764 4567
Q ss_pred hHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CCCCC--hhHHH
Q 005642 405 IISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY---HIDPE--IEHYS 477 (686)
Q Consensus 405 ~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~ 477 (686)
.++..++.+|.+.|+ +|.++|+++.+... .+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 788888888888887 88888888877543 378899999999999999999999999997432 56786 78999
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhh
Q 005642 478 CMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551 (686)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 551 (686)
.++.+|.+.|++++|.+.|+++. ..| +..+|..++.+|...|++++|...++++++++|+++.++..++.+|..
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999999999973 345 789999999999999999999999999999999999999999988753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-25 Score=230.14 Aligned_cols=370 Identities=15% Similarity=0.105 Sum_probs=240.1
Q ss_pred HHHHHHhcCChHHHHHHHhccCC--CC-hhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChh
Q 005642 146 LVNLYGKCGDFNSANQVLNMMKE--PD-DFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDT 219 (686)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 219 (686)
+...+.+.|++++|++.++++.+ |+ ...+..+...+.+.|++++|...++...+ .+..+|..+...|.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 34456667777777777776652 43 33444555666677777777777665432 34556777777777777777
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 220 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
+|++.|+++.+.. +.+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...|+++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7777777776631 2234456666777777777777777777776653 2234455666666666777777777766654
Q ss_pred ---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 005642 300 ---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373 (686)
Q Consensus 300 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 373 (686)
+.+..+|..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..... +.+..++.
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 22344555555555556666655555555543 123445555555555555555555555555431 12344455
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 005642 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453 (686)
Q Consensus 374 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 453 (686)
.+..++.+.|++++|...++.+.+. + +.+..++..+...+.+.|++
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~---------------------------------~-p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL---------------------------------Q-PHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT---------------------------------C-SSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh---------------------------------C-CCCHHHHHHHHHHHHHcCCH
Confidence 5555555555555555555544432 2 12456777888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 005642 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERM 531 (686)
Q Consensus 454 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 531 (686)
++|.+.|+++.+. .+.+..++..++.++.+.|++++|...++++ ...| +...+..+...+.+.|++++|...++++
T Consensus 288 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 288 AEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888742 2346788888888888888888888888887 3444 4677888888888888888888888888
Q ss_pred HccCCCCchhHHHHHHHHhhcCC
Q 005642 532 IELDPENACAYIQLSSIFATSGE 554 (686)
Q Consensus 532 ~~~~p~~~~~~~~l~~~~~~~g~ 554 (686)
++..|+++.+|..++.++...|+
T Consensus 366 ~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 366 IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HhhCCCCHHHHHhHHHHHHHccC
Confidence 88888888888888888776653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-25 Score=227.00 Aligned_cols=350 Identities=12% Similarity=0.068 Sum_probs=234.0
Q ss_pred HHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhh
Q 005642 179 SGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255 (686)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 255 (686)
..+.+.|++++|.+.++++.+ .+...+..+...+.+.|++++|...++...+. .+.+..++..+..++.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHH
Confidence 345556666666666655432 23445555556666666666666666665553 23455566666666666666666
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc--cC-CchhHHHHHHHHHhCCCHHHHHHHHhhCCC-
Q 005642 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VY-DTILLNTMITVYSSCGRIEDAKHIFRTMPN- 331 (686)
Q Consensus 256 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 331 (686)
|...++++.+.. +.+...+..++.++.+.|++++|...|+++. .| +...+..+...+...|++++|.+.|+++.+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 666666666543 2244455666666666666666666666554 12 233444445555555555555555554432
Q ss_pred -C-CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHH
Q 005642 332 -K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409 (686)
Q Consensus 332 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 409 (686)
| +..+|..+...+...|++++|+..|+++.+.+ +.+...+..+...+...|++++|
T Consensus 165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A--------------------- 222 (388)
T 1w3b_A 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRA--------------------- 222 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHH---------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH---------------------
Confidence 1 23445555555555555555555555554431 12233444444444444554444
Q ss_pred HHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCC
Q 005642 410 LVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGC 488 (686)
Q Consensus 410 li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 488 (686)
...+++..... +.+..++..+...+...|++++|.+.|+++.+ ..| +..++..++.++.+.|+
T Consensus 223 ------------~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 223 ------------VAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp ------------HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSC
T ss_pred ------------HHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCC
Confidence 44444444332 22577888999999999999999999999983 345 57899999999999999
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 489 LNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 489 ~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
+++|.+.|+++. .+++..+|..+...+...|++++|...++++++..|++..++..++.+|.+.|++++|.+.++++.
T Consensus 287 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999983 445788999999999999999999999999999999999999999999999999999999999888
Q ss_pred hc
Q 005642 567 EK 568 (686)
Q Consensus 567 ~~ 568 (686)
+.
T Consensus 367 ~~ 368 (388)
T 1w3b_A 367 RI 368 (388)
T ss_dssp TT
T ss_pred hh
Confidence 64
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=240.18 Aligned_cols=213 Identities=14% Similarity=0.142 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHCCCCcCHH-HHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhc
Q 005642 220 EALLLFHKMRRNGVLEDAS-TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 220 ~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 298 (686)
.+..+.+++.++++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4455666777766655443 57778888888888888888888888888888888888888888776654221
Q ss_pred ccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005642 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378 (686)
Q Consensus 299 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 378 (686)
.+.+..++|.++|++|...|+.||..||+.+|.+
T Consensus 81 ----------------------------------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~ 114 (501)
T 4g26_A 81 ----------------------------------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL 114 (501)
T ss_dssp ----------------------------------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred ----------------------------------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 1223456777788888888888888888888888
Q ss_pred HHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 005642 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456 (686)
Q Consensus 379 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 456 (686)
|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|+ +|.++|++|.+.|+.||..||++||.+|++.|+.++|
T Consensus 115 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 115 AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence 88888888888888888888888888888888888888877 7888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 005642 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486 (686)
Q Consensus 457 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 486 (686)
.+++++|. +.+..|+..||+.++..|.+.
T Consensus 195 ~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 195 YKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 88888888 568888888888888887753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=236.97 Aligned_cols=190 Identities=14% Similarity=0.161 Sum_probs=175.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC---------hhhHHHHHHHHHHcCCCchHH
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF---------LEHGKQVHGHACKVGVIDDVI 273 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 273 (686)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46888999999999999999999999999999999999999999987654 678999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhH
Q 005642 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353 (686)
Q Consensus 274 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 353 (686)
+|+.+|.+|++.|++++|.++|++|.. .-..||..+|+.+|.+|++.|++++|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~---------------------------~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKA---------------------------FGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---------------------------TTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---------------------------cCCCCccceehHHHHHHHHCCCHHHH
Confidence 999999999999999999999997642 22458999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh
Q 005642 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419 (686)
Q Consensus 354 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 419 (686)
.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+.|..|+..+|+.++..|+..+.
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a 225 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVA 225 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999987654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-22 Score=216.24 Aligned_cols=422 Identities=10% Similarity=0.028 Sum_probs=287.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhccCC--CChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhc
Q 005642 141 VLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISN 215 (686)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 215 (686)
..+......+.+.|++++|+..|+++.+ |+...|..+..++.+.|++++|...|+++.+ .+..+|..+..++.+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888888873 7777888888888888888888888886543 3566888888888888
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh---cCChhHHH
Q 005642 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK---RGMPSDAC 292 (686)
Q Consensus 216 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~ 292 (686)
|++++|+..|+++.+.+ +++......++..+........+.+.+..+...+..|+......-...... ......+.
T Consensus 87 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 88888888888888764 333333333333333222222222222111111100100000000000000 00001111
Q ss_pred HHHHhcc---------cC-CchhHHHHHHHHHh---CCCHHHHHHHHhhCCC----------------C-CchhHHHHHH
Q 005642 293 KLFSELK---------VY-DTILLNTMITVYSS---CGRIEDAKHIFRTMPN----------------K-SLISWNSMIV 342 (686)
Q Consensus 293 ~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li~ 342 (686)
..+.... .| +...+......+.. .|++++|...|+++.+ + +..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 1111111 01 12333344444443 6667777766665533 1 2346677777
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--H
Q 005642 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--D 420 (686)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~ 420 (686)
.+...|++++|...|+++.+.. |+..++..+..++...|++++|...++.+.+.. +.+...+..+...|...|+ +
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 7888888888888888877753 336677777778888888888888888777654 3455677777778887776 8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005642 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500 (686)
Q Consensus 421 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (686)
|...+++..+.... +..++..+...+...|++++|..+++++.+. .+.+...+..++..+.+.|++++|...++++.
T Consensus 323 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888765433 5678888999999999999999999999843 22367889999999999999999999999872
Q ss_pred ----CCCC----HHHHHHHHHHHHh---cCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 501 ----FEAD----VGMWSSILRGCVA---HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 501 ----~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
..++ ...|..+...+.. .|++++|...++++++..|+++.++..++.+|...|++++|...++++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 2222 4478889999999 9999999999999999999999999999999999999999999999888754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-21 Score=202.23 Aligned_cols=334 Identities=9% Similarity=0.030 Sum_probs=216.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 282 (686)
..|..+...+.+.|++++|+.+|+++.+. .+.+..++..+..++...|++++|...++.+.+.+ +.+..++..++.+|
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 34444444455555555555555554442 12234444444444555555555555555554443 22344444455555
Q ss_pred HhcCChhHHHHHHHhcccCC---c---hhHHHH------------HHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHH
Q 005642 283 SKRGMPSDACKLFSELKVYD---T---ILLNTM------------ITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMI 341 (686)
Q Consensus 283 ~~~g~~~~A~~~~~~~~~~~---~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 341 (686)
.+.|++++|...|+++...+ . ..+..+ ...+...|++++|...|+++.+ .+...+..++
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 184 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 55555555555555444211 1 222222 3346667777777777766543 3556777788
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHH
Q 005642 342 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDA 421 (686)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A 421 (686)
.+|.+.|++++|+..|+++.+. .+.+..++..+...+...|++++|...++.+.+.... +...+..+.
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~---------- 252 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYK---------- 252 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH----------
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHH----------
Confidence 8888888888888888887765 2445677778888888888888888888877765321 111111110
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHH
Q 005642 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-----IEHYSCMVDLFARAGCLNEAVNLI 496 (686)
Q Consensus 422 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~ 496 (686)
.+. ....+..+...|.+.|++++|..+|+++.+ ..|+ ...+..++.++.+.|++++|...+
T Consensus 253 -----~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 253 -----QVK------KLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp -----HHH------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -----HHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 000 112334457889999999999999999984 3454 457899999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH------------HHhhcC-----Ccch
Q 005642 497 EQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS------------IFATSG-----EWEK 557 (686)
Q Consensus 497 ~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g-----~~~~ 557 (686)
+++ ...| +...|..+..+|...|++++|...+++++++.|+++.++..++. .|...| +.++
T Consensus 319 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~ 398 (450)
T 2y4t_A 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE 398 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHH
Confidence 997 3445 68889999999999999999999999999999999999999884 455555 4555
Q ss_pred HHHHHHH
Q 005642 558 SSLIRDI 564 (686)
Q Consensus 558 a~~~~~~ 564 (686)
+.+.+++
T Consensus 399 ~~~~y~~ 405 (450)
T 2y4t_A 399 IIKAYRK 405 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666664
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-20 Score=203.11 Aligned_cols=238 Identities=11% Similarity=-0.053 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcc--cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhC
Q 005642 273 IVASALLDTYSKRGMPSDACKLFSELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQN 347 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 347 (686)
.++..+...+...|++++|...|+++. .|+...+..+..++...|++++|...++++.+ .+...|..+...+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 344445555555555555555555443 12233444444455555555555555544433 3556778888888888
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHH
Q 005642 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNE 427 (686)
Q Consensus 348 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~ 427 (686)
|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+..
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------------------- 368 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF---------------------------- 368 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS----------------------------
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----------------------------
Confidence 88888888888887753 3345677777888888888888888888776542
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHHhCC
Q 005642 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE----IEHYSCMVDLFAR---AGCLNEAVNLIEQMP 500 (686)
Q Consensus 428 m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 500 (686)
+.+..++..+...+...|++++|...++++.+...-.++ ...+..++.++.. .|++++|...++++.
T Consensus 369 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 369 ------PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp ------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred ------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 124567777888888999999999999988743222222 3488899999999 999999999998872
Q ss_pred -CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 005642 501 -FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545 (686)
Q Consensus 501 -~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 545 (686)
..| +...+..+...+...|++++|...+++++++.|+++..+..+
T Consensus 443 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 443 KLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 334 577888999999999999999999999999999887766555
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-21 Score=207.41 Aligned_cols=415 Identities=12% Similarity=0.079 Sum_probs=312.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHH
Q 005642 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYI 213 (686)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 213 (686)
...+..+...+.+.|++++|++.|+++.+ .+...+..+...|.+.|++++|.+.|++..+ .+..+|..+...+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45667788888899999999999988873 4567788888899999999999999987653 45778888999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC------CCchHHHHHHHHHHHHhcCC
Q 005642 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG------VIDDVIVASALLDTYSKRGM 287 (686)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~l~~~~~~~g~ 287 (686)
..|++++|+..|+.+ . ..|+... ..+..+...+....+...++.+.... ..|+. ..+..+....+
T Consensus 105 ~~g~~~~A~~~~~~~-~--~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~ 175 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-S--LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIFD 175 (537)
T ss_dssp HHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHH-h--cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhcC
Confidence 999999999999633 3 2333221 12333444455567888888776541 22232 23444556667
Q ss_pred hhHHHHHHHhcccCCch---hHHHHHHHHHh--------CCCHHHHHHHHhhCCCCCc----------hhHHHHHHHHHh
Q 005642 288 PSDACKLFSELKVYDTI---LLNTMITVYSS--------CGRIEDAKHIFRTMPNKSL----------ISWNSMIVGLSQ 346 (686)
Q Consensus 288 ~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~ 346 (686)
.+.+...+......+.. ....+...+.. .|++++|...++++.+.++ .++..+...+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 77766666655544333 33333333322 2478899999888866332 246677788889
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHH
Q 005642 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALAL 424 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~ 424 (686)
.|++++|...|+++.+. .|+..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|+ +|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999885 5667888888889999999999999999998875 4467788888999998887 89999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----
Q 005642 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---- 500 (686)
Q Consensus 425 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 500 (686)
|++..+.... +..++..+...+...|++++|.++++++.+. .+.+...+..++..+...|++++|...|+++.
T Consensus 333 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 333 FQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 9998876533 5678889999999999999999999999843 22367899999999999999999999999872
Q ss_pred ----CCCCHHHHHHHHHHHHhc----------CChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 501 ----FEADVGMWSSILRGCVAH----------GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 501 ----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
.......+......+... |++++|...++++++..|+++.++..++.+|...|++++|.+.++++.
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111233345556777777 999999999999999999999999999999999999999999999988
Q ss_pred hcC
Q 005642 567 EKH 569 (686)
Q Consensus 567 ~~~ 569 (686)
+..
T Consensus 490 ~~~ 492 (537)
T 3fp2_A 490 ILA 492 (537)
T ss_dssp HHC
T ss_pred HhC
Confidence 754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-20 Score=195.21 Aligned_cols=308 Identities=11% Similarity=0.051 Sum_probs=209.8
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc-
Q 005642 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK- 299 (686)
Q Consensus 221 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 299 (686)
+...+.+.... -+.+...+..+...+.+.|++++|..+|+.+.+.. +.+...+..++.+|...|++++|...|+++.
T Consensus 11 ~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33344444332 23455667777777777888888888888777763 3466777777778888888888888777665
Q ss_pred --cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc------hhHHHHHH------------HHHhCCChhhHHHHHHH
Q 005642 300 --VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL------ISWNSMIV------------GLSQNGSPIEALDLFCN 359 (686)
Q Consensus 300 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~------------~~~~~g~~~~A~~~~~~ 359 (686)
+.+..++..++.+|.+.|++++|...|+++.+.++ ..+..++. .+...|++++|+..|++
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22455666666666666666666666666654222 33333322 24444555555555554
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHH
Q 005642 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIIT 439 (686)
Q Consensus 360 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 439 (686)
+.+. .+.+..++..+..++.+.|++++ |...|+++.+.. +.+..+
T Consensus 169 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~---------------------------------A~~~~~~~~~~~-~~~~~~ 213 (450)
T 2y4t_A 169 ILEV-CVWDAELRELRAECFIKEGEPRK---------------------------------AISDLKAASKLK-NDNTEA 213 (450)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHTTCGGG---------------------------------GHHHHHHHHHHH-CSCHHH
T ss_pred HHHh-CCCChHHHHHHHHHHHHCCCHHH---------------------------------HHHHHHHHHHhC-CCCHHH
Confidence 4443 12233444444444444444444 444444444332 236788
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHH------------HHHHHhcCChHHHHHHHHhC-CCCCC-
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCM------------VDLFARAGCLNEAVNLIEQM-PFEAD- 504 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~-~~~p~- 504 (686)
+..+...+...|++++|...|+++.+ ..| +...+..+ +..+.+.|++++|...|+++ ...|+
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~ 290 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI 290 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Confidence 88999999999999999999999883 345 44455444 88999999999999999998 34454
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 505 ----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 505 ----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
...|..++..+.+.|++++|+..++++++..|+++.+|..++.+|...|++++|...++++.+.
T Consensus 291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4478889999999999999999999999999999999999999999999999999999988874
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-19 Score=195.29 Aligned_cols=422 Identities=9% Similarity=-0.013 Sum_probs=223.4
Q ss_pred HHHHHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCC---CChhhHHHHHHHH
Q 005642 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGF 82 (686)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 82 (686)
..+...-..+...|++++|...+..+++.... ++. ++..+...|.+.|++++|...|+++.+ .+..+|..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPV-FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 34455556666667777777777777775522 233 677777777777777777777776652 3556677777777
Q ss_pred HhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCChHHH
Q 005642 83 MKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL--DFDSVLGSSLVNLYGKCGDFNSA 159 (686)
Q Consensus 83 ~~~g~~~~A~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A 159 (686)
...|++++|+..|+.+.. |+.. ...+..+... .....+...++.++...+ .+........+..+....+.+.+
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFD--GASIEPMLER--NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-------------CHHHH--HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHcCCHHHHHHHHHHHhcCCCCC--hHHHHHHHHH--HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 777777777777754322 2211 1111122211 233445555555543210 01111112233334445555555
Q ss_pred HHHHhccCCCChh---hHHHHHHHHHc--------cCCHHHHHHHHhhcCCCC----------hhhHHHHHHHHHhcCCh
Q 005642 160 NQVLNMMKEPDDF---CLSALISGYAN--------CGKMNDARRVFDRTTDTS----------SVMWNSMISGYISNNED 218 (686)
Q Consensus 160 ~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g~~ 218 (686)
...+....+.+.. ....+...+.. .|++++|..+|+++.+.+ ..+|..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 5555555443322 11122211111 124445555554443311 11233444444445555
Q ss_pred hHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhc
Q 005642 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 219 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 298 (686)
++|+..|+++.+. .|+..++..+...+...|+++.|...++.+.+.. +.+..++..+...|..
T Consensus 260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-------------- 322 (537)
T 3fp2_A 260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI-------------- 322 (537)
T ss_dssp HHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh--------------
Confidence 5555555554442 2334444444444445555555555555444432 2233344444444444
Q ss_pred ccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 005642 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375 (686)
Q Consensus 299 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 375 (686)
.|++++|...|+++.+ .+...|..+...+...|++++|...|+++.+. .+.+...+..+
T Consensus 323 -----------------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l 384 (537)
T 3fp2_A 323 -----------------LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFF 384 (537)
T ss_dssp -----------------TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHH
T ss_pred -----------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHH
Confidence 4444444444444432 34567778888888888888888888888775 23445677777
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----
Q 005642 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHC----- 450 (686)
Q Consensus 376 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----- 450 (686)
...+...|++++|...++.+.+...... ........+......+...
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~----------------------------~~~~~~~~~~~~a~~~~~~~~~~~ 436 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQE----------------------------KIHVGIGPLIGKATILARQSSQDP 436 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCS----------------------------SCSSTTHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcch----------------------------hhHHHHHHHHHHHHHHHHHhhccc
Confidence 8888888888888888887765431100 0111122233334455555
Q ss_pred -----CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 451 -----GLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 451 -----g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
|++++|...|+++.+. .| +...+..++.+|.+.|++++|.+.|++.
T Consensus 437 ~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 437 TQLDEEKFNAAIKLLTKACEL---DPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp --CCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhHhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8888888888887732 33 4566667777777777777777777665
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.4e-18 Score=171.75 Aligned_cols=334 Identities=10% Similarity=0.044 Sum_probs=207.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 005642 173 CLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249 (686)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 249 (686)
.+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 344444555555555555555554332 234455555555555555555555555554431 2234444555555555
Q ss_pred cCChhhHHHHHHHHHHcCCC--chHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHh
Q 005642 250 LGFLEHGKQVHGHACKVGVI--DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327 (686)
Q Consensus 250 ~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 327 (686)
.|++++|...++.+.+.... .+...+..+...+. + ..+..+...+...|++++|...++
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~------------~~~~~~a~~~~~~~~~~~A~~~~~ 144 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------M------------QRLRSQALDAFDGADYTAAITFLD 144 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------H------------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------H------------HHHHHHHHHHHHccCHHHHHHHHH
Confidence 55555555555555543210 12222222211100 0 011122456666677777777766
Q ss_pred hCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcch
Q 005642 328 TMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404 (686)
Q Consensus 328 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 404 (686)
++.+ .++..+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...++.+.+..... .
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~ 222 (359)
T 3ieg_A 145 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH-K 222 (359)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-H
T ss_pred HHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-h
Confidence 6543 35567777888888888888888888888765 34456777788888888888888888888777654221 1
Q ss_pred hHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-h----hHHHHH
Q 005642 405 IISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-I----EHYSCM 479 (686)
Q Consensus 405 ~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~----~~~~~l 479 (686)
..+. .+..+. .......+...+.+.|++++|...++++.+. .|+ . ..+..+
T Consensus 223 ~~~~---------------~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~l 278 (359)
T 3ieg_A 223 RCFA---------------HYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERI 278 (359)
T ss_dssp HHHH---------------HHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHH
T ss_pred HHHH---------------HHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHH
Confidence 1111 111111 1122334466788899999999999998843 243 2 345568
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc
Q 005642 480 VDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552 (686)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 552 (686)
..++.+.|++++|...+++.. ..| +...|..+...+...|++++|...++++++..|++..++..+..+....
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 888999999999999998873 344 6788889999999999999999999999999999888888777766543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.2e-16 Score=171.09 Aligned_cols=414 Identities=12% Similarity=0.084 Sum_probs=283.4
Q ss_pred HHHHHHHHhcCCcHHHHHHhccCCC-C-----ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCh
Q 005642 45 NRLLQMYMRCGNPTDALLLFDEMPR-R-----NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL 118 (686)
Q Consensus 45 ~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~ 118 (686)
...+..|+..|.+.+|+.+++++.- + +....+.++....+. +..+..+..++...-+ ...+-..+...
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l-- 1062 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN-- 1062 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC--
Confidence 5667777777888888888877752 2 234555566555444 3344444444332211 12222333333
Q ss_pred hhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcC
Q 005642 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198 (686)
Q Consensus 119 ~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 198 (686)
+.+++|..+++... -.....+.++ -..|++++|.++.++... ..+|..+..++.+.|++++|...|.+.
T Consensus 1063 glyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred CCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 56777777777641 1111122222 266788888888887744 467778888888999999999888764
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHH
Q 005642 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278 (686)
Q Consensus 199 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 278 (686)
.|...|..++..+.+.|++++|+++|...++.. +++...+.+..+|++.++++....+. + .++...+..+
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQV 1201 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHH
Confidence 567788888999999999999999998877653 33333345788888888887544432 2 3455666678
Q ss_pred HHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHH
Q 005642 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358 (686)
Q Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (686)
.+.|...|++++|...|... ..|..+...|.+.|++++|.+.+++. .++.+|..+..+|...|++..|.....
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 88899999999999999864 58888999999999999999999877 456788888888888888888877655
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh----HHHHHHHHHHHCCCC
Q 005642 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----DALALFNEMRNTGVK 434 (686)
Q Consensus 359 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----~A~~~~~~m~~~~~~ 434 (686)
. +..+...+..++..|.+.|.+++|+.+++..+... +-....|+-|...|++-.. ++++.|..-. +++
T Consensus 1275 ~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~ 1346 (1630)
T 1xi4_A 1275 H-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIP 1346 (1630)
T ss_pred h-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccc
Confidence 3 33455667788888899999999999998777555 5566678788888887765 6666666432 222
Q ss_pred C------CHHHHHHHHHHHhccCCHHHHHHH--------HHHH--HHhcCCCCChhHHHHHHHHHHhcC-----------
Q 005642 435 P------TIITFTAILSACDHCGLVKEGQKW--------FDAM--KWQYHIDPEIEHYSCMVDLFARAG----------- 487 (686)
Q Consensus 435 p------~~~~~~~ll~~~~~~g~~~~A~~~--------~~~~--~~~~~~~p~~~~~~~l~~~~~~~g----------- 487 (686)
| +...|..+...|.+.|+++.|... |+.- ........+++.|.-.+..|....
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l 1426 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVL 1426 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHh
Confidence 2 456788888889999999988732 2111 000112336777777777777666
Q ss_pred ----ChHHHHHHHHhCC
Q 005642 488 ----CLNEAVNLIEQMP 500 (686)
Q Consensus 488 ----~~~~A~~~~~~~~ 500 (686)
+++.+.++|++..
T Consensus 1427 ~~rlD~~R~V~l~~~~~ 1443 (1630)
T 1xi4_A 1427 SPRLDHTRAVNYFSKVK 1443 (1630)
T ss_pred hhcCChHHHHHHHHHcC
Confidence 7888888887653
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-17 Score=168.29 Aligned_cols=309 Identities=9% Similarity=0.014 Sum_probs=236.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 005642 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280 (686)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 280 (686)
++..|..+...+...|++++|+..|+++.+. .+.+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 3567788888899999999999999998875 24457788888888888899999999998888874 335677888888
Q ss_pred HHHhcCChhHHHHHHHhcccCCc------hhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHH
Q 005642 281 TYSKRGMPSDACKLFSELKVYDT------ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354 (686)
Q Consensus 281 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 354 (686)
+|...|++++|...|+++...++ ..+..+...+. ...+..+...+...|++++|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------------MQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------HHHHHHHHHHHHHccCHHHHH
Confidence 88888888888888887753322 12222221111 112334567788888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCC
Q 005642 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVK 434 (686)
Q Consensus 355 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~ 434 (686)
..|+++.+. .+.+...+..+...+...|++++|...++.+.+.. +
T Consensus 141 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~ 185 (359)
T 3ieg_A 141 TFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK----------------------------------S 185 (359)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------------------------------S
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------------C
Confidence 888888775 24456677778888888888888888877766542 2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHH------------HHHHHHHhcCChHHHHHHHHhCC-
Q 005642 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYS------------CMVDLFARAGCLNEAVNLIEQMP- 500 (686)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~- 500 (686)
.+..++..+...+...|++++|.+.+++..+. .| +...+. .++..+.+.|++++|...++++.
T Consensus 186 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 25677888888889999999999999998842 34 333332 33777999999999999999872
Q ss_pred CCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 501 FEAD-V----GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 501 ~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..|+ . ..+..+...+...|++++|...++++++..|+++.++..++.++...|++++|.+.++++.+.
T Consensus 263 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 263 TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3343 3 235567888999999999999999999999999999999999999999999999999988864
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-16 Score=167.16 Aligned_cols=362 Identities=12% Similarity=0.020 Sum_probs=213.6
Q ss_pred ChhHHHHHHHHHHh----cCChHHHHHHHhccCC-CChhhHHHHHHHHHc----cCCHHHHHHHHhhcCC-CChhhHHHH
Q 005642 139 DSVLGSSLVNLYGK----CGDFNSANQVLNMMKE-PDDFCLSALISGYAN----CGKMNDARRVFDRTTD-TSSVMWNSM 208 (686)
Q Consensus 139 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l 208 (686)
++..+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|.+.|++..+ .++.++..|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~L 117 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNL 117 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56666777777776 6777888877776653 345556666666666 6777777777766543 345566666
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----cCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 005642 209 ISGYIS----NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS----LGFLEHGKQVHGHACKVGVIDDVIVASALLD 280 (686)
Q Consensus 209 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 280 (686)
...|.. .+++++|+..|++..+.| +...+..+...+.. .+++++|.+.+++..+.| +...+..|..
T Consensus 118 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 191 (490)
T 2xm6_A 118 GVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGY 191 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 666666 667777777777776654 34555555555554 566777777777776654 4555666666
Q ss_pred HHHh----cCChhHHHHHHHhccc-CCchhHHHHHHHHHh----CCCHHHHHHHHhhCCC-CCchhHHHHHHHHHh----
Q 005642 281 TYSK----RGMPSDACKLFSELKV-YDTILLNTMITVYSS----CGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQ---- 346 (686)
Q Consensus 281 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~---- 346 (686)
+|.. .+++++|...|++... .+..++..+...|.. .++.++|...|++..+ .++..+..+...|..
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAG 271 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTS
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Confidence 6666 6677777777665542 234455555555554 4555555555555433 233444444444444
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHH
Q 005642 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI-----SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDA 421 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A 421 (686)
.+++++|+..|++..+.| +...+..+...+... +++++|...++...+.+
T Consensus 272 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---------------------- 326 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---------------------- 326 (490)
T ss_dssp SCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----------------------
T ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----------------------
Confidence 455555555555554432 223333333333333 44444444444443332
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHH
Q 005642 422 LALFNEMRNTGVKPTIITFTAILSACDHCG---LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR----AGCLNEAVN 494 (686)
Q Consensus 422 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 494 (686)
+...+..+...+...| +.++|.++|++..+. .++..+..+..+|.. .+++++|.+
T Consensus 327 --------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 327 --------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp --------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred --------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 3344444555554434 667777777776632 356666677777766 677777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCC---CchhHHHHHHHH
Q 005642 495 LIEQMPFEADVGMWSSILRGCVA----HGDKGLGRKVAERMIELDPE---NACAYIQLSSIF 549 (686)
Q Consensus 495 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~ 549 (686)
.|++.....+...+..+...|.. .++.++|...++++.+..|+ ++.+...++.++
T Consensus 389 ~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 389 WMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 77766323355666666666666 67777777777777776643 445555554443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-17 Score=164.91 Aligned_cols=290 Identities=12% Similarity=0.038 Sum_probs=181.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 005642 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280 (686)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 280 (686)
++..+..++..+...|++++|+++|+++.+.. +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 45556666666666677777777776666542 2233344445555566666666666666666653 234445555555
Q ss_pred HHHhcC-ChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHH
Q 005642 281 TYSKRG-MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359 (686)
Q Consensus 281 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (686)
.+...| ++++|...|++... ....+...|..+...+...|++++|+..|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 150 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATT----------------------------LEKTYGPAWIAYGHSFAVESEHDQAMAAYFT 150 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHT----------------------------TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHH----------------------------hCCccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666665 55656655554321 1112345566666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHH
Q 005642 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIIT 439 (686)
Q Consensus 360 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 439 (686)
+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..+
T Consensus 151 a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------------------------~~~~~~ 195 (330)
T 3hym_B 151 AAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA----------------------------------PEDPFV 195 (330)
T ss_dssp HHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------------------------------TTCHHH
T ss_pred HHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC----------------------------------CCChHH
Confidence 66542 2233444455556666666666666665554432 124566
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcC-------CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHH
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYH-------IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSS 510 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ 510 (686)
+..+...+...|++++|...++++.+... .+....++..++.++.+.|++++|...+++.. ..| +...|..
T Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 275 (330)
T 3hym_B 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSA 275 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHH
Confidence 77777777778888888888877764211 12245677788888888888888888887762 233 5667778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH-hhcCCc
Q 005642 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF-ATSGEW 555 (686)
Q Consensus 511 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 555 (686)
+...+...|++++|...++++++..|+++.++..++.++ ...|+.
T Consensus 276 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 276 IGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 888888888888888888888888888888888888877 455554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-15 Score=164.68 Aligned_cols=441 Identities=14% Similarity=0.150 Sum_probs=293.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-CC-----cchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 005642 75 WNAMIEGFMKLGHKEKSLQLFNVMPQ-KN-----DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 148 (686)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~-~~-----~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~ 148 (686)
-...+.+|...|.+.+|+++|++..- |. ...-+.++.+..+. +...+.......- ......+..
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka---D~~Rv~eyI~kLd-------~~d~~eIA~ 1057 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA---DRTRVMEYINRLD-------NYDAPDIAN 1057 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh---ChhhHHHHHHHhh-------hccHHHHHH
Confidence 34566778888999999999988763 22 23344456555555 3333333333322 122444777
Q ss_pred HHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 005642 149 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228 (686)
Q Consensus 149 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 228 (686)
.+...|.+++|..+|++....+ ...+.++ ...+++++|.++.++... ..+|..+..++.+.|++++|++.|.+.
T Consensus 1058 Iai~lglyEEAf~IYkKa~~~~-~A~~VLi---e~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDVNT-SAVQVLI---EHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCCHH-HHHHHHH---HHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 7888899999999999875322 2223332 277889999999887744 678889999999999999999999653
Q ss_pred HHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHH
Q 005642 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308 (686)
Q Consensus 229 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 308 (686)
-|...|..++.+|.+.|+++++.+++....+.. ++....+.++.+|.+.+++++..... ..++...|..
T Consensus 1132 ------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 ------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQ 1200 (1630)
T ss_pred ------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHH
Confidence 467778889999999999999999998887764 33333445888899998888644443 3556667778
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 005642 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388 (686)
Q Consensus 309 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 388 (686)
+...|...|++++|..+|... ..|..+...|.+.|++++|++.+++. .+..+|..+-.+|...|++..|
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHH
Confidence 889999999999999999985 47889999999999999999998876 3567888888888888888888
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHH
Q 005642 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHC--GLVKEGQKWFDAMK 464 (686)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~ 464 (686)
...... +..+...+..++..|.+.|. +|+.+++...... +-....|.-+...+++. ++..++.++|..
T Consensus 1270 ~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~-- 1341 (1630)
T 1xi4_A 1270 QMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS-- 1341 (1630)
T ss_pred HHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Confidence 776543 33445566677777877776 7888887665332 22334554555444443 444455555543
Q ss_pred HhcCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHhCC--------------CCCCHHHHHHHHHHHHhcCChhHH
Q 005642 465 WQYHIDP------EIEHYSCMVDLFARAGCLNEAVNLIEQMP--------------FEADVGMWSSILRGCVAHGDKGLG 524 (686)
Q Consensus 465 ~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------~~p~~~~~~~li~~~~~~g~~~~A 524 (686)
+.+++| +...|.-++-.|.+.|+++.|...+-+.. ...++..|...+.-|... ...+
T Consensus 1342 -rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~--~P~~ 1418 (1630)
T 1xi4_A 1342 -RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLL 1418 (1630)
T ss_pred -hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh--ChHH
Confidence 234444 35667778888888888888774433221 222455555555555522 2333
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 525 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
+.-+...+. |. . -+......+.+.|+..-+..+++.+...
T Consensus 1419 lndLl~~l~--~r-l-D~~R~V~l~~~~~~l~lik~yl~~vq~~ 1458 (1630)
T 1xi4_A 1419 LNDLLMVLS--PR-L-DHTRAVNYFSKVKQLPLVKPYLRSVQNH 1458 (1630)
T ss_pred HHHHHHHhh--hc-C-ChHHHHHHHHHcCChHHhHHHHHHHHHh
Confidence 333333332 21 0 1334555666677777777776666543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-17 Score=161.54 Aligned_cols=278 Identities=12% Similarity=0.144 Sum_probs=135.7
Q ss_pred HhcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHHH
Q 005642 52 MRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHI 131 (686)
Q Consensus 52 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~ 131 (686)
-+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++... ++++.+...++..
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~--g~~EeAi~yl~~a 87 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTS--GNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 46788999999999996664 8999999999999999999999764 6667888899988876 7899999988888
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHH
Q 005642 132 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211 (686)
Q Consensus 132 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 211 (686)
++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..+...|...|++++|...|.++ ..|..++.+
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~ 157 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAST 157 (449)
T ss_dssp -----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHH
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHH
Confidence 775 55688899999999999999999988864 77789999999999999999999999987 589999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHH
Q 005642 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291 (686)
Q Consensus 212 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 291 (686)
+.+.|++++|++.++++ .++.+|..++.+|...|+++.|...... +..++.-...++..|.+.|++++|
T Consensus 158 L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 158 LVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHH
Confidence 99999999999999998 3789999999999999999999655443 222333355689999999999999
Q ss_pred HHHHHhcccCC---chhHHHHHHHHHh--CCCHHHHHHHHhhCCC--------CCchhHHHHHHHHHhCCChhhHHHH
Q 005642 292 CKLFSELKVYD---TILLNTMITVYSS--CGRIEDAKHIFRTMPN--------KSLISWNSMIVGLSQNGSPIEALDL 356 (686)
Q Consensus 292 ~~~~~~~~~~~---~~~~~~li~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~ 356 (686)
..+++.....+ ...|+-|...|++ .+++.+.++.|..-.. .+...|..+...|.+.++++.|...
T Consensus 227 i~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 227 ITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 99999887443 4467777776665 4567777777775544 2567899999999999999988763
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=166.43 Aligned_cols=286 Identities=12% Similarity=0.103 Sum_probs=92.9
Q ss_pred hcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 005642 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231 (686)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 231 (686)
+.|++++|.++++++..|+ +|+.++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.+++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4566777777777764443 6666666666666666666666543 34446666666666666666666655554442
Q ss_pred CCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHH
Q 005642 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311 (686)
Q Consensus 232 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 311 (686)
.+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+++.|...|++++|...|..+ ..|..++.
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 3345555556666666666666555553 244456666666666666666666666644 35555555
Q ss_pred HHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 005642 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391 (686)
Q Consensus 312 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 391 (686)
++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..|+ -...++..|.+.|.++++..+
T Consensus 157 ~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHHHHCCCHHHHHHH
Confidence 555555555555555555 245555555555555555555533332211 1222 223444555555555555555
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHhcCC
Q 005642 392 FARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHC--GLVKEGQKWFDAMKWQYHI 469 (686)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~ 469 (686)
++...... +-....|+.+..++++- ++..+.++.|. ++.++
T Consensus 230 Le~aL~le----------------------------------~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini 272 (449)
T 1b89_A 230 LEAALGLE----------------------------------RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNI 272 (449)
T ss_dssp HHHHTTST----------------------------------TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCH
T ss_pred HHHHhCCc----------------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcC
Confidence 55443222 22334444444444443 23333333333 23344
Q ss_pred CC------ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 470 DP------EIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 470 ~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
+| +...|..++-.|.+.++++.|...+-+.
T Consensus 273 ~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 273 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 44 3567888888888888888888766555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=160.71 Aligned_cols=259 Identities=12% Similarity=0.040 Sum_probs=193.8
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHH
Q 005642 271 DVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGL 344 (686)
Q Consensus 271 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 344 (686)
+...+..++..+...|++++|..+|+++. +.+...+..++.++...|++++|...++++.+ .++..|..+...+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 33444455555555566666666665554 22333444455555555555555555555433 3556777777888
Q ss_pred HhCC-ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHH
Q 005642 345 SQNG-SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA 423 (686)
Q Consensus 345 ~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~ 423 (686)
...| ++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+..
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------------ 155 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM------------------------ 155 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT------------------------
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc------------------------
Confidence 8888 7888888888877652 3345667777777888888888888777766543
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 005642 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-F 501 (686)
Q Consensus 424 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 501 (686)
+.+...+..+...+...|++++|.+.++++. ...| +...+..++..+...|++++|...++++. .
T Consensus 156 ----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 156 ----------KGCHLPMLYIGLEYGLTNNSKLAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp ----------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 1134556668888999999999999999998 3445 68899999999999999999999998872 1
Q ss_pred ----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 502 ----------EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 502 ----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+.....|..+...+...|++++|...++++++..|+++.++..++.++...|++++|.+.++++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 334678999999999999999999999999999999999999999999999999999999995554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-15 Score=157.77 Aligned_cols=354 Identities=11% Similarity=0.066 Sum_probs=223.7
Q ss_pred CChhhHHHHHHHHHc----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCcCHHH
Q 005642 169 PDDFCLSALISGYAN----CGKMNDARRVFDRTTD-TSSVMWNSMISGYIS----NNEDTEALLLFHKMRRNGVLEDAST 239 (686)
Q Consensus 169 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 239 (686)
.+...+..+...|.. .+++++|...|++..+ .++.++..|...|.. .+++++|++.|++..+.| +...
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 344555555555555 6667777776665443 345566666666666 666777777776666643 3444
Q ss_pred HHHHHHHHHc----cCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh----cCChhHHHHHHHhccc-CCchhHHHHH
Q 005642 240 LASVLSACSS----LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK----RGMPSDACKLFSELKV-YDTILLNTMI 310 (686)
Q Consensus 240 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 310 (686)
+..+...+.. .+++++|...++...+.| +...+..|..+|.. .+++++|...|++..+ .+..++..+.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555555 566666666666666654 34455555666655 5566666666665432 2334444444
Q ss_pred HHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChH
Q 005642 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----ISSLE 386 (686)
Q Consensus 311 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~ 386 (686)
..|... ....+++++|+..|++..+.| +...+..+...+.. .++++
T Consensus 191 ~~y~~g---------------------------~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 191 YMYSRG---------------------------LGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHhcC---------------------------CCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 444440 000444445555554444432 23333334433332 44455
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHh----chh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CCHHH
Q 005642 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCK----CGY--DALALFNEMRNTGVKPTIITFTAILSACDHC-----GLVKE 455 (686)
Q Consensus 387 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~ 455 (686)
+|...|+...+.+ +...+..|..+|.. .++ +|+..|++..+.| +...+..+...+... +++++
T Consensus 241 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 241 QSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 5555555444432 12233333333333 222 5555555555443 455666677777666 89999
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHH
Q 005642 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG---CLNEAVNLIEQMPFEADVGMWSSILRGCVA----HGDKGLGRKVA 528 (686)
Q Consensus 456 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 528 (686)
|..+|++..+ .+ +...+..+..+|...| ++++|.+.|++.....+...+..+...|.. .+++++|...+
T Consensus 315 A~~~~~~a~~-~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 315 AISWYTKSAE-QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHHH-TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHh-cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999999884 22 5677888888888867 789999999988434578888999999988 89999999999
Q ss_pred HHHHccCCCCchhHHHHHHHHhh----cCCcchHHHHHHHHHhcCC
Q 005642 529 ERMIELDPENACAYIQLSSIFAT----SGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 529 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 570 (686)
+++.+.. ++.++..++.+|.. .+++++|..++++..+.+.
T Consensus 391 ~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 391 RKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999854 57789999999998 8999999999999998764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-16 Score=163.70 Aligned_cols=382 Identities=9% Similarity=-0.016 Sum_probs=203.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHhhcCC------------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-
Q 005642 171 DFCLSALISGYANCGKMNDARRVFDRTTD------------TSSVMWNSMISGYISNNEDTEALLLFHKMRRN-----G- 232 (686)
Q Consensus 171 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 232 (686)
...|+.+...+...|++++|++.|++..+ ....+|+.+...|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 45677777777778888888777765321 12456777777777778888887777776541 0
Q ss_pred CCc-CHHHHHHHHHHHHc--cCChhhHHHHHHHHHHcCCCchHHHHHHHHHH---HHhcCChhHHHHHHHhcc---cCCc
Q 005642 233 VLE-DASTLASVLSACSS--LGFLEHGKQVHGHACKVGVIDDVIVASALLDT---YSKRGMPSDACKLFSELK---VYDT 303 (686)
Q Consensus 233 ~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~---~~~~ 303 (686)
..+ ...++.....++.. .+++++|...|++.++..+ .++..+..+..+ +...++.++|+..+++.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 111 23445444444433 3457777777777777542 234444444443 334566666666666544 2233
Q ss_pred hhHHHHHHHHHh----CCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 005642 304 ILLNTMITVYSS----CGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376 (686)
Q Consensus 304 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 376 (686)
.++..+...+.. .++.++|.+.+++... .+...+..+...|...|++++|+..|++..+.. +-+..++..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 444444433333 3445555555554432 233455555566666666666666666555431 11233333333
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 005642 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456 (686)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 456 (686)
.++...+....+.. ....... .......+.|...+++..+.... +..++..+...+...|++++|
T Consensus 289 ~~y~~~~~~~~~~~----------~~~~~~~----~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 289 CCYRAKVFQVMNLR----------ENGMYGK----RKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHHHHHHHHC----------------CH----HHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhhhHH----------HHHHHHH----HHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHH
Confidence 33221110000000 0000000 00000111677777777665422 445677888899999999999
Q ss_pred HHHHHHHHHhcCCCCCh--hHHHHHHHH-HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 005642 457 QKWFDAMKWQYHIDPEI--EHYSCMVDL-FARAGCLNEAVNLIEQM-PFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532 (686)
Q Consensus 457 ~~~~~~~~~~~~~~p~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 532 (686)
.+.|++..+ ....|.. ..+..+... +...|++++|+..|++. .+.|+...... ....+..++++.+
T Consensus 354 ~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l 423 (472)
T 4g1t_A 354 EYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHH
Confidence 999999883 2322221 223334333 35789999999999887 46666443322 2344567788888
Q ss_pred ccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCccce
Q 005642 533 ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWA 579 (686)
Q Consensus 533 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 579 (686)
+.+|+++.+|..++.+|...|++++|.+.+++..+.+.......+|+
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 89999999999999999999999999999999988766544443343
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-14 Score=157.14 Aligned_cols=408 Identities=9% Similarity=0.044 Sum_probs=250.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhhcCC--CChhhHHHHHHH
Q 005642 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISG 211 (686)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 211 (686)
+-|...|..++. +.+.|++++|+.+|+++.+ | +...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 347778888888 4778999999999999875 4 345678888888888999999999988765 566677776653
Q ss_pred H-HhcCChhHHHH----HHHHHHHC-CCCc-CHHHHHHHHHHHHc---------cCChhhHHHHHHHHHHcCCCchHHHH
Q 005642 212 Y-ISNNEDTEALL----LFHKMRRN-GVLE-DASTLASVLSACSS---------LGFLEHGKQVHGHACKVGVIDDVIVA 275 (686)
Q Consensus 212 ~-~~~g~~~~A~~----~~~~m~~~-g~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~ 275 (686)
. ...|+.++|.+ +|++.+.. |..| +...|...+..... .|+++.|..+|+..++....+....|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 3 34577777665 66666542 4444 45566666655543 57788888888888873212222344
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhh-------CC------CCC--------c
Q 005642 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT-------MP------NKS--------L 334 (686)
Q Consensus 276 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~------~~~--------~ 334 (686)
..........|. ..+..++.+ +.++++.|..++.. +. .|+ .
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 333221111110 011111110 11223333332222 10 111 1
Q ss_pred hhHHHHHHHHHhC----CCh----hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCChH-------HHHHHH
Q 005642 335 ISWNSMIVGLSQN----GSP----IEALDLFCNMNKLDLRMDKFSLASVISACAN-------ISSLE-------LGEQVF 392 (686)
Q Consensus 335 ~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~ 392 (686)
..|...+...... ++. ..+..+|++.... .+.+...|......+.+ .|+++ +|..++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 2344443322221 122 2566677777664 23345566666655554 57765 677777
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 005642 393 ARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPT-I-ITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468 (686)
Q Consensus 393 ~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 468 (686)
++.++.-.+.+...|..++..+.+.|+ +|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--- 384 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--- 384 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---
Confidence 776652234456667777777766665 677777777764 332 2 4677777777778888888888888772
Q ss_pred CCC-ChhHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch----
Q 005642 469 IDP-EIEHYSCMVDL-FARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC---- 540 (686)
Q Consensus 469 ~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~---- 540 (686)
..| +...+...+.. +...|++++|..+|++. ...| +...|..++..+.+.|+.++|..+++++++..|.++.
T Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 233 33333333322 33578888888888876 3334 4677888888888888888888888888887665543
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 541 AYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.|...+......|+.+.+..+.+++.+.-
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 67777777777888888888888777643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.7e-15 Score=157.64 Aligned_cols=401 Identities=11% Similarity=0.052 Sum_probs=243.1
Q ss_pred CcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC--CChhhHHHHHH
Q 005642 102 NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALIS 179 (686)
Q Consensus 102 ~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 179 (686)
+...|..++.. .+. ++.+.+..+++.+++.. +.+...|..++..+.+.|++++|+.+|+++.+ |++..|..++.
T Consensus 12 ~~~~w~~l~~~-~~~--~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQN--QPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHS--SCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHh--CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 55678888874 444 68999999999999863 45778899999999999999999999999985 77777777765
Q ss_pred H-HHccCCHHHHHH----HHhhcC-----C-CChhhHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCcCHHH
Q 005642 180 G-YANCGKMNDARR----VFDRTT-----D-TSSVMWNSMISGYIS---------NNEDTEALLLFHKMRRNGVLEDAST 239 (686)
Q Consensus 180 ~-~~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~ 239 (686)
. ....|+.++|.+ +|++.. . .+...|...+....+ .|+++.|..+|++.++....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 3 345678777765 666542 1 356788888877655 7899999999999987311111233
Q ss_pred HHHHHHHHH-------------ccCChhhHHHHHHHHH------HcC---CCch--------HHHHHHHHHHHHhc----
Q 005642 240 LASVLSACS-------------SLGFLEHGKQVHGHAC------KVG---VIDD--------VIVASALLDTYSKR---- 285 (686)
Q Consensus 240 ~~~ll~~~~-------------~~~~~~~a~~~~~~~~------~~g---~~~~--------~~~~~~l~~~~~~~---- 285 (686)
|........ ..+++..|..++.... +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 333222111 1223344444443311 110 1221 12233222221111
Q ss_pred CChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHh-------CCChh----
Q 005642 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQ-------NGSPI---- 351 (686)
Q Consensus 286 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~---- 351 (686)
++.+. ..+.+..+|++... .++..|...+..+.+ .|+++
T Consensus 248 ~~~~~---------------------------~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 248 EDQTL---------------------------ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp SCSHH---------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred Ccchh---------------------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 11100 00133333333332 233444444444443 45544
Q ss_pred ---hHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHH
Q 005642 352 ---EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFN 426 (686)
Q Consensus 352 ---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~ 426 (686)
+|..+|++..+.-.+-+...+..++..+.+.|++++|..+|+.+++.........|..++..+.+.|+ +|..+|+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 55555555553211223444455555555555555565555555553211112355555555555554 5666666
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC----
Q 005642 427 EMRNTGVKPTIITFTAILS-ACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP---- 500 (686)
Q Consensus 427 ~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 500 (686)
+..+.... +...|...+. .+...|+.++|..+|+...+. .| ++..|..++..+.+.|+.++|..+|++..
T Consensus 381 ~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 381 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 66543211 2223322222 233589999999999998843 35 68899999999999999999999999872
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 005642 501 FEAD--VGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 501 ~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 537 (686)
..|+ ...|...+......|+.+.+..+.+++.+..|+
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 2332 457888899889999999999999999998884
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-16 Score=162.40 Aligned_cols=273 Identities=10% Similarity=0.052 Sum_probs=189.5
Q ss_pred CChhHHHH-HHHhcc---cC----CchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHH
Q 005642 286 GMPSDACK-LFSELK---VY----DTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEAL 354 (686)
Q Consensus 286 g~~~~A~~-~~~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 354 (686)
|++++|.. .|++.. +. +...+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 45555555 555433 11 233455556666666666666666655543 23456666666677777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHH---------------HHHHHHHhchh
Q 005642 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST---------------SLVDFYCKCGY 419 (686)
Q Consensus 355 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------~li~~~~~~~~ 419 (686)
..|+++.+.. +.+..++..+...+...|++++|...++.+.+........... .+...+ ..|+
T Consensus 119 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 196 (368)
T 1fch_A 119 SALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSL 196 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hccc
Confidence 7777666542 3355566666666777777777777777666654322211111 122222 4554
Q ss_pred --HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHH
Q 005642 420 --DALALFNEMRNTGVKP-TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNL 495 (686)
Q Consensus 420 --~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 495 (686)
+|...|+++.+..... +..++..+...+...|++++|...++++.+. .| +...+..++.++.+.|++++|...
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7888888877654332 5788899999999999999999999998842 34 678999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-----------chhHHHHHHHHhhcCCcchHHHHH
Q 005642 496 IEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN-----------ACAYIQLSSIFATSGEWEKSSLIR 562 (686)
Q Consensus 496 ~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~ 562 (686)
|+++ ...| +...+..+...+...|++++|...++++++..|++ ..+|..++.+|...|++++|..++
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 9987 3344 57889999999999999999999999999988877 788999999999999999999987
Q ss_pred H
Q 005642 563 D 563 (686)
Q Consensus 563 ~ 563 (686)
+
T Consensus 354 ~ 354 (368)
T 1fch_A 354 A 354 (368)
T ss_dssp T
T ss_pred H
Confidence 6
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.2e-16 Score=157.01 Aligned_cols=297 Identities=11% Similarity=0.056 Sum_probs=199.1
Q ss_pred HccCCHHHHHH-HHhhcCC---C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCh
Q 005642 182 ANCGKMNDARR-VFDRTTD---T----SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 253 (686)
Q Consensus 182 ~~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 253 (686)
...|++++|.. .|++... . +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34567777777 7765443 1 34568888888999999999999999998863 45677888888888899999
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCC---chhHHHHHHHHHhCCCHHHHHHHHhhCC
Q 005642 254 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD---TILLNTMITVYSSCGRIEDAKHIFRTMP 330 (686)
Q Consensus 254 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~ 330 (686)
++|...++.+.+.. +.+..++..+..+|...|++++|...|+++...+ ...+..+... . ...
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~-------~~~ 179 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------A-------GGA 179 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------h-------hhh
Confidence 99999999888875 4467788888888999999999998888765221 1111111000 0 000
Q ss_pred CCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHH
Q 005642 331 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409 (686)
Q Consensus 331 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 409 (686)
.+ ...+..+...+ ..|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+..
T Consensus 180 ~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------- 247 (368)
T 1fch_A 180 GL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR---------- 247 (368)
T ss_dssp -------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred cc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------
Confidence 00 01111222333 7788888888888887753221 46778888888888889999988888877653
Q ss_pred HHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCC
Q 005642 410 LVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGC 488 (686)
Q Consensus 410 li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 488 (686)
+.+..++..+...+...|++++|...|+++.+ +.| +...+..++.+|.+.|+
T Consensus 248 ------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 248 ------------------------PNDYLLWNKLGATLANGNQSEEAVAAYRRALE---LQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp ------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTC
T ss_pred ------------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCC
Confidence 12456677777777788888888888888763 234 56777788888888888
Q ss_pred hHHHHHHHHhCC-CCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 489 LNEAVNLIEQMP-FEA------------DVGMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 489 ~~~A~~~~~~~~-~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
+++|...|+++. ..| ....|..+..++...|+.++|..++++.++
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 888888877761 111 156788888888888888888877765554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-15 Score=146.09 Aligned_cols=246 Identities=10% Similarity=0.014 Sum_probs=174.9
Q ss_pred HHHhcCChhHHHHHHHhcccCCc----hhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHH
Q 005642 281 TYSKRGMPSDACKLFSELKVYDT----ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356 (686)
Q Consensus 281 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 356 (686)
-....|+++.|+..++.....++ .....+.++|...|+++.|...++....++..++..+...+...++.++|++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 34456777777777766553322 23345567777777777777777665444556777777788888888888888
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCC
Q 005642 357 FCNMNKLDLRMDK-FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKP 435 (686)
Q Consensus 357 ~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p 435 (686)
++++...+..|+. ..+..+...+...|++++|.+.++. +.
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---------------------------------------~~ 128 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---------------------------------------GD 128 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---------------------------------------CC
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---------------------------------------CC
Confidence 8888776655543 4445556777788888877777654 12
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChh---HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE---HYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSS 510 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ 510 (686)
+...+..++..+.+.|++++|.+.++++.+. .|+.. ....++..+...|++++|...|+++. .+.+...|+.
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~ 205 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG 205 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 5667777777888888888888888888743 35432 11233344555688888888888872 3446777888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcch-HHHHHHHHHhc
Q 005642 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK-SSLIRDIMREK 568 (686)
Q Consensus 511 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 568 (686)
+..++...|++++|+..++++++.+|+++.++..++.++...|++++ +.++++++.+.
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888876 46788877764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-16 Score=159.16 Aligned_cols=258 Identities=9% Similarity=-0.034 Sum_probs=161.0
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 303 TILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379 (686)
Q Consensus 303 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 379 (686)
...+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+..++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34466666666667777777766666643 345677777777777777777777777777652 33466777777777
Q ss_pred HccCChHHHHHHHHHHHHhCCCcc---------hhHHHHHHHHHHhchh--HHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 005642 380 ANISSLELGEQVFARVTIIGLDSD---------QIISTSLVDFYCKCGY--DALALFNEMRNTGVK-PTIITFTAILSAC 447 (686)
Q Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~-p~~~~~~~ll~~~ 447 (686)
...|++++|...++.+.+...... ...+..+...|...|+ +|...++++.+.... ++..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 777777777777777766431100 1112223445555555 666666666554322 1456667777777
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~ 525 (686)
...|++++|.+.|+++.+. .+.+..++..++.+|.+.|++++|...|+++ ...| +...|..+...+...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 7777777777777776632 1225667777777777777777777777766 2334 3666777777777777777777
Q ss_pred HHHHHHHccCCC------------CchhHHHHHHHHhhcCCcchHHHHHH
Q 005642 526 KVAERMIELDPE------------NACAYIQLSSIFATSGEWEKSSLIRD 563 (686)
Q Consensus 526 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~ 563 (686)
..+++++++.|+ +..+|..++.++...|+.+.+.++.+
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777776655 24567777777777777776666554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-15 Score=154.98 Aligned_cols=272 Identities=9% Similarity=-0.015 Sum_probs=183.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 005642 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280 (686)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 280 (686)
+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888888888888888888888752 4467778888888888888888888888888864 345777888888
Q ss_pred HHHhcCChhHHHHHHHhcccCCch---hHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHH
Q 005642 281 TYSKRGMPSDACKLFSELKVYDTI---LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357 (686)
Q Consensus 281 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 357 (686)
+|...|++++|...|+++...++. .+..+. .....+..+...+...|++++|+..|
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------------------------------CCHHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 888888888888888765421111 010000 11233445567777788888888888
Q ss_pred HHHHHCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCC
Q 005642 358 CNMNKLDLR-MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPT 436 (686)
Q Consensus 358 ~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~ 436 (686)
+++.+.... ++..++..+...+...|++++|...++.+.+.. +.+
T Consensus 201 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~ 246 (365)
T 4eqf_A 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR----------------------------------PED 246 (365)
T ss_dssp HHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------------------------TTC
T ss_pred HHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------------CCC
Confidence 888775322 156777788888888888888888888777653 124
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-----------
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA----------- 503 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----------- 503 (686)
..++..+...+...|++++|.+.|+++.+ ..| +..++..++.+|.+.|++++|...|+++. ..|
T Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 323 (365)
T 4eqf_A 247 YSLWNRLGATLANGDRSEEAVEAYTRALE---IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHP 323 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchh
Confidence 56677777777778888888888887763 234 46777778888888888888888777761 111
Q ss_pred --CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 005642 504 --DVGMWSSILRGCVAHGDKGLGRKVAERMI 532 (686)
Q Consensus 504 --~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 532 (686)
+...|..+..++...|+.+.+..+.++.+
T Consensus 324 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 324 AISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp ---CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 24567788888888888887777665533
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-15 Score=157.47 Aligned_cols=378 Identities=11% Similarity=0.018 Sum_probs=214.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhccCC-----------C-ChhhHHHHHHHHHccCCHHHHHHHHhhcCC-----
Q 005642 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-----------P-DDFCLSALISGYANCGKMNDARRVFDRTTD----- 199 (686)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 199 (686)
......||.|...+...|++++|++.|++..+ | ...+|+.+...|...|++++|...+++..+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 34466788899999999999999998877642 2 245788889999999999999888875432
Q ss_pred ------CChhhHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCcC-HHHHHHHHHH---HHccCChhhHHHHHHHHHHcC
Q 005642 200 ------TSSVMWNSMISGYISN--NEDTEALLLFHKMRRNGVLED-ASTLASVLSA---CSSLGFLEHGKQVHGHACKVG 267 (686)
Q Consensus 200 ------~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~g 267 (686)
....++..+..++... +++++|++.|++..+. .|+ ...+..+..+ +...++.++|.+.+++.++..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1244566665555553 5689999999998874 454 4444444443 345677888999998888875
Q ss_pred CCchHHHHHHHHHHHHh----cCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC--C-CchhH
Q 005642 268 VIDDVIVASALLDTYSK----RGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISW 337 (686)
Q Consensus 268 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~ 337 (686)
+.+..++..+...+.. .|++++|.+.+++.. +.+..++..+...|...|++++|...+++..+ | +..++
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH
Confidence 3355556555555444 467788999888765 44567888899999999999999999988765 3 34566
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 005642 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417 (686)
Q Consensus 338 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 417 (686)
..+...|...+....+.. ...........+..+.|...++.+.+.. +.+...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 666665543211000000 0000000011122344444455444433 22333444445555555
Q ss_pred hh--HHHHHHHHHHHCCCCCCH--HHHHHHHH-HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005642 418 GY--DALALFNEMRNTGVKPTI--ITFTAILS-ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492 (686)
Q Consensus 418 ~~--~A~~~~~~m~~~~~~p~~--~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 492 (686)
|+ +|...|++..+....|.. ..+..+.. ...+.|+.++|++.|++.. .+.|+........ ..+
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~---------~~l 415 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK---------DKL 415 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH---------HHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH---------HHH
Confidence 54 555555555544333222 12222222 3456799999999999987 3556543322222 223
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 005642 493 VNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546 (686)
Q Consensus 493 ~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 546 (686)
.+++++. ...| +..+|..+...+...|++++|+..|++++++.|.++.+...++
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 3333333 2233 5778999999999999999999999999999988877655443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-15 Score=149.90 Aligned_cols=266 Identities=8% Similarity=-0.063 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHh
Q 005642 273 IVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQ 346 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 346 (686)
..+..+...+...|++++|...|+++. +.+...+..+..++...|++++|...++++.+ .+..++..+...+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 344556666666777777777666554 22334455555555555555555555554432 133444445555555
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHH-HH-HHHhchh--HH
Q 005642 347 NGSPIEALDLFCNMNKLDLRMDKF-SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL-VD-FYCKCGY--DA 421 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~~~--~A 421 (686)
.|++++|...++++.+. .|+.. .+..+...+ |+......+ .. .+...|+ +|
T Consensus 102 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 102 EHNANAALASLRAWLLS--QPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp TTCHHHHHHHHHHHHHT--STTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHH
Confidence 55555555555555443 11111 111110000 000000000 11 1233333 56
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 005642 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-P 500 (686)
Q Consensus 422 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 500 (686)
...++++.+... .+..++..+...+...|++++|.+.++++.+. .+.+...+..++..+...|++++|...++++ .
T Consensus 158 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 158 RTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666555432 26778888999999999999999999998842 2236788999999999999999999999987 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC------------CchhHHHHHHHHhhcCCcchHHHHHHHH
Q 005642 501 FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE------------NACAYIQLSSIFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 501 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (686)
..| +...|..+...+...|++++|...++++++..|+ ++.++..++.++...|++++|..++++.
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334 5788999999999999999999999999999998 6888999999999999999999988743
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-14 Score=142.73 Aligned_cols=271 Identities=8% Similarity=-0.010 Sum_probs=174.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 005642 209 ISGYISNNEDTEALLLFHKMRRNGVLEDA--STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286 (686)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 286 (686)
|+-....|++..|+..+++... ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445567888888887776533 34443 3445566777788888777765543 23556667777777777777
Q ss_pred ChhHHHHHHHhccc----C-CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHH
Q 005642 287 MPSDACKLFSELKV----Y-DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361 (686)
Q Consensus 287 ~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (686)
+.++|.+.++++.. | +...+..+..++...|++++|.+.+++ ..++..+..++..+.+.|++++|...|+++.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888877776531 2 334455555666666666666666665 2344555555555555555555555555554
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHH
Q 005642 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFT 441 (686)
Q Consensus 362 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 441 (686)
+. .|+... . ....
T Consensus 158 ~~--~p~~~~-~----------------------------------------------------------------~l~~ 170 (291)
T 3mkr_A 158 DQ--DEDATL-T----------------------------------------------------------------QLAT 170 (291)
T ss_dssp HH--CTTCHH-H----------------------------------------------------------------HHHH
T ss_pred hh--CcCcHH-H----------------------------------------------------------------HHHH
Confidence 43 122100 0 0011
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005642 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHG 519 (686)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g 519 (686)
..+..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|...|+++ ...| +..++..++..+...|
T Consensus 171 a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 171 AWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 1222334568888899999888843 3347888888888999999999999998886 3445 5778888998888999
Q ss_pred ChhH-HHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 520 DKGL-GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 520 ~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
+.++ +...++++++.+|+++.+. ....+.+.++++..
T Consensus 249 ~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 249 KPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 8865 5788899999999887643 34445555555544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-14 Score=143.37 Aligned_cols=278 Identities=10% Similarity=-0.053 Sum_probs=178.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 005642 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 281 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 281 (686)
...|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 4456677777888888888888888877652 3466677777777888888888888888887764 3456677778888
Q ss_pred HHhcCChhHHHHHHHhcccC---CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHH-HH-HHHhCCChhhHHHH
Q 005642 282 YSKRGMPSDACKLFSELKVY---DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM-IV-GLSQNGSPIEALDL 356 (686)
Q Consensus 282 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~~ 356 (686)
|...|++++|...++++... +...+..+.... ++......+ .. .+...|++++|...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------CCTTSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 88888888888888765522 111111110000 001111112 11 25666777888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCC
Q 005642 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPT 436 (686)
Q Consensus 357 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~ 436 (686)
++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+
T Consensus 161 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~ 205 (327)
T 3cv0_A 161 LHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR----------------------------------PDD 205 (327)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTC
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----------------------------------CCc
Confidence 88777652 3356677777778888888888888888776543 114
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----------
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD----------- 504 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------- 504 (686)
..++..+...+...|++++|.+.++++.+. .+.+...+..++.++.+.|++++|.+.++++ ...|+
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 283 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASRE 283 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhh
Confidence 455666666777777777777777776632 1224666777777777777777777777665 12222
Q ss_pred --HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 505 --VGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 505 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
...|..+..++...|+.++|...++++++..|
T Consensus 284 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 284 ATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 55677777777777777777777766655433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-16 Score=169.90 Aligned_cols=147 Identities=14% Similarity=0.069 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHH---HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHH
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMN---KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 411 (686)
.+|+++|.+|++.|+.++|.++|++|. ..|+.||..|||++|.+|++.|++++|.++|++|.+.|+.||..+|++||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 578888888888888888888887765 34678888888888888888888888888888888888888888888888
Q ss_pred HHHHhchh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC------hhHHHHHHHH
Q 005642 412 DFYCKCGY---DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE------IEHYSCMVDL 482 (686)
Q Consensus 412 ~~~~~~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~------~~~~~~l~~~ 482 (686)
+++++.|. +|.++|++|.+.|+.||..+|++++.++.+. ..++..+++. .++.|+ ..+...|.+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~--P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVK--PTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGC--CCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhC--cccCCCCCCcccccchHHHHHH
Confidence 88888774 5778888888888888888888777655443 3444444443 233332 3344455666
Q ss_pred HHhcC
Q 005642 483 FARAG 487 (686)
Q Consensus 483 ~~~~g 487 (686)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.3e-13 Score=139.95 Aligned_cols=270 Identities=10% Similarity=0.050 Sum_probs=176.6
Q ss_pred ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhH---HHHHHHhcc-cCCchhHHHHHHHHHhCC----CHHHHH
Q 005642 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD---ACKLFSELK-VYDTILLNTMITVYSSCG----RIEDAK 323 (686)
Q Consensus 252 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~ 323 (686)
++++|...+++..+.|... .+..|...|...+..+. +...+.... ..++..+..|...|...+ ..+.+.
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 4445555555555544221 33344444444433222 222222222 223445555555555555 233444
Q ss_pred HHHhhCCCCCchhHHHHHHHHHhCC---ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CChHHHHHHHHHHH
Q 005642 324 HIFRTMPNKSLISWNSMIVGLSQNG---SPIEALDLFCNMNKLDLRMDKFSLASVISACANI----SSLELGEQVFARVT 396 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~~~ 396 (686)
.++......++..+..+...|...| +.++|+..|++..+.| .++...+..+...+... +++++|...|+...
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 4555556666668888888888888 7888888888888775 33444444555555444 56777777776654
Q ss_pred HhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHHHHhcCCCCCh
Q 005642 397 IIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSA-C--DHCGLVKEGQKWFDAMKWQYHIDPEI 473 (686)
Q Consensus 397 ~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~g~~~~A~~~~~~~~~~~~~~p~~ 473 (686)
.| ++..+..+... + ...+++++|.++|++..+ .| +.
T Consensus 245 -~g------------------------------------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~ 283 (452)
T 3e4b_A 245 -PG------------------------------------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QP 283 (452)
T ss_dssp -GG------------------------------------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CH
T ss_pred -CC------------------------------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CH
Confidence 22 34444555544 3 458899999999999883 33 67
Q ss_pred hHHHHHHHHHHhcC-----ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCchhHHH
Q 005642 474 EHYSCMVDLFARAG-----CLNEAVNLIEQMPFEADVGMWSSILRGCVA----HGDKGLGRKVAERMIELDPENACAYIQ 544 (686)
Q Consensus 474 ~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~ 544 (686)
..+..|..+|. .| ++++|.+.|++.. .-+...+..+...|.. ..+.++|...++++.+ +.++.+...
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~ 359 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFA 359 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHH
Confidence 77888888887 55 9999999999988 5577888888877765 3489999999999986 445677889
Q ss_pred HHHHHhh----cCCcchHHHHHHHHHhcCC
Q 005642 545 LSSIFAT----SGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 545 l~~~~~~----~g~~~~a~~~~~~~~~~~~ 570 (686)
++.+|.. ..++++|..++++..+.|.
T Consensus 360 Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 360 IAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9998875 4689999999999888764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-15 Score=164.38 Aligned_cols=146 Identities=12% Similarity=0.113 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHhhc-------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHH
Q 005642 172 FCLSALISGYANCGKMNDARRVFDRT-------TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244 (686)
Q Consensus 172 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 244 (686)
.+|+++|++|++.|++++|.++|++| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 47888888888888888888888553 35889999999999999999999999999999999999999999999
Q ss_pred HHHHccCCh-hhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccC-----CchhHHHHHHHHHhCC
Q 005642 245 SACSSLGFL-EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-----DTILLNTMITVYSSCG 317 (686)
Q Consensus 245 ~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 317 (686)
.++++.|+. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++...++..++..+ .+.+...|.+.|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 789999999999999999999999988776655444444443333321 1223344555555444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-13 Score=129.10 Aligned_cols=196 Identities=13% Similarity=0.033 Sum_probs=143.8
Q ss_pred CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 005642 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412 (686)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 412 (686)
++..+..+...+.+.|++++|+..|++..+. -+.+...+..+..++.+.|++++|...++++++... .
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~---------- 71 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-R---------- 71 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C----------
Confidence 4556777777777888888888888877764 233456667777777788888888887777776541 1
Q ss_pred HHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHH
Q 005642 413 FYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHC-----------GLVKEGQKWFDAMKWQYHIDP-EIEHYSCMV 480 (686)
Q Consensus 413 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 480 (686)
+...+..+...+... |++++|+..+++..+ +.| +...+..+.
T Consensus 72 -----------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg 125 (217)
T 2pl2_A 72 -----------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRG 125 (217)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred -----------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 333444444444444 999999999999883 456 688899999
Q ss_pred HHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHH
Q 005642 481 DLFARAGCLNEAVNLIEQMP-FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559 (686)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 559 (686)
.++...|++++|+..|++.. ...+...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|.
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------
T ss_pred HHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 99999999999999999872 22678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 005642 560 LIRDIMR 566 (686)
Q Consensus 560 ~~~~~~~ 566 (686)
+.+++..
T Consensus 206 ~~~~~~~ 212 (217)
T 2pl2_A 206 RAAALEH 212 (217)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 9988553
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-13 Score=131.53 Aligned_cols=220 Identities=15% Similarity=0.071 Sum_probs=154.0
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--cc----hhHHHH
Q 005642 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD--SD----QIISTS 409 (686)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 409 (686)
.|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+.... ++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555555555555555555555543 44455555555555555555555555555443211 01 344555
Q ss_pred HHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhc
Q 005642 410 LVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARA 486 (686)
Q Consensus 410 li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 486 (686)
+...|...|+ +|...|++..+.. |+. ..+...|++++|...++++.. ..| +...+..++..+...
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHh
Confidence 5555555554 5555555555432 332 245566888999999998873 345 577888999999999
Q ss_pred CChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHH
Q 005642 487 GCLNEAVNLIEQMP-F-EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564 (686)
Q Consensus 487 g~~~~A~~~~~~~~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (686)
|++++|...|+++. . +.+...|..+...+...|++++|+..++++++..|+++.++..++.++...|++++|.+.+++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999872 3 336788999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhcC
Q 005642 565 MREKH 569 (686)
Q Consensus 565 ~~~~~ 569 (686)
..+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 87643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-13 Score=142.54 Aligned_cols=368 Identities=14% Similarity=0.015 Sum_probs=212.8
Q ss_pred HHHHHHhcCChHHHHHHHhccCC-CChhhHHHHHHHHHccCCH---HHHHHHHhhcCCCChhhHHHHHHHHHhcC-----
Q 005642 146 LVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALISGYANCGKM---NDARRVFDRTTDTSSVMWNSMISGYISNN----- 216 (686)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g----- 216 (686)
+...+.+.|++++|.+.|++..+ .+...+..+...|...|+. ++|...|++..+.++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 34444555666666666665543 2333444444445555555 66777776665555666666666555554
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCh---hhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh----
Q 005642 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL---EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS---- 289 (686)
Q Consensus 217 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~---- 289 (686)
++++|+..|++..+.|... .+..+...+...+.. ..+.+.+......|. ......|...|...+.++
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHH
Confidence 6678888888887765332 444455555544332 344555555555543 344556677777777444
Q ss_pred HHHHHHHhcccCCchhHHHHHHHHHhCC---CHHHHHHHHhhCCCC---CchhHHHHHHHHHhC----CChhhHHHHHHH
Q 005642 290 DACKLFSELKVYDTILLNTMITVYSSCG---RIEDAKHIFRTMPNK---SLISWNSMIVGLSQN----GSPIEALDLFCN 359 (686)
Q Consensus 290 ~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A~~~~~~ 359 (686)
.+..+++.....++..+..|...|...| +.++|.+.|++..+. +...+..+...|... +++++|+.+|++
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 4445555555667778888888888888 888888888877553 223346677777554 688999999999
Q ss_pred HHHCCCCCCHHHHHHHHHH-H--HccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCC
Q 005642 360 MNKLDLRMDKFSLASVISA-C--ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPT 436 (686)
Q Consensus 360 m~~~g~~p~~~t~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~ 436 (686)
.. . -+...+..+... + ...+++++|...|++..+.| +
T Consensus 243 aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g------------------------------------~ 282 (452)
T 3e4b_A 243 IA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD------------------------------------Q 282 (452)
T ss_dssp HG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT------------------------------------C
T ss_pred Hc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC------------------------------------C
Confidence 87 3 344455555554 3 45788888888888777665 3
Q ss_pred HHHHHHHHHHHhccC-----CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHH
Q 005642 437 IITFTAILSACDHCG-----LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR----AGCLNEAVNLIEQMPFEADVGM 507 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g-----~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~ 507 (686)
...+..|...|. .| ++++|.++|++.. .-++.....|..+|.. ..++++|...|++....-+...
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A 356 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA 356 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH
Confidence 444444444444 33 7888888887654 2366777777777776 3488888888887733334445
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHccCCCCchhHHHHHHHH--hhcCCcchHHHHHHHHHh
Q 005642 508 WSSILRGCVA----HGDKGLGRKVAERMIELDPENACAYIQLSSIF--ATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 508 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~ 567 (686)
...+...|.. ..|.++|...++++.+..+... ...+..+. ...++.++|.++.++-++
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a--~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEA--NDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHH--HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5556666553 4588889999988887665333 33333333 233455666666555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-12 Score=124.65 Aligned_cols=217 Identities=8% Similarity=-0.065 Sum_probs=152.7
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCC-CchhHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--
Q 005642 309 MITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN-- 381 (686)
Q Consensus 309 li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-- 381 (686)
+...+...|++++|...|++..++ ++.++..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 12 lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~ 88 (273)
T 1ouv_A 12 LGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQ 88 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCC
Confidence 333333333333333333333332 33455566666666 666666666666666654 45555566666666
Q ss_pred --cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHH
Q 005642 382 --ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDH----CGLVKE 455 (686)
Q Consensus 382 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~ 455 (686)
.+++++|...|+...+.+ +...+..+...|.. .+++++
T Consensus 89 ~~~~~~~~A~~~~~~a~~~~------------------------------------~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 89 GVSQNTNKALQYYSKACDLK------------------------------------YAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT------------------------------------CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CcccCHHHHHHHHHHHHHcC------------------------------------CccHHHHHHHHHHcCCCcccCHHH
Confidence 666666666666555432 55666677777777 889999
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHH
Q 005642 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFAR----AGCLNEAVNLIEQMPFEADVGMWSSILRGCVA----HGDKGLGRKV 527 (686)
Q Consensus 456 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~ 527 (686)
|.++|++..+ .+ +...+..+...|.. .+++++|...|++.....+...+..+...+.. .+++++|+..
T Consensus 133 A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 208 (273)
T 1ouv_A 133 AVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALAR 208 (273)
T ss_dssp HHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred HHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 9999998883 23 56677788888888 88999999999887322456778888888888 8999999999
Q ss_pred HHHHHccCCCCchhHHHHHHHHhh----cCCcchHHHHHHHHHhcCC
Q 005642 528 AERMIELDPENACAYIQLSSIFAT----SGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 528 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 570 (686)
++++.+..| +.++..++.+|.. .+++++|.+++++..+.+.
T Consensus 209 ~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 209 YSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 999998866 6678899999998 9999999999998887654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-12 Score=124.74 Aligned_cols=239 Identities=8% Similarity=-0.048 Sum_probs=161.3
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCC
Q 005642 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318 (686)
Q Consensus 239 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 318 (686)
++..+...+...|++++|...++.+.+.. .+..++..+..+|...|++++|...+++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~------------------- 65 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAV------------------- 65 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHH-------------------
Confidence 34444445555555555555555555544 444555555666666666666666555322
Q ss_pred HHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 005642 319 IEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395 (686)
Q Consensus 319 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 395 (686)
++....... ....|..+...+...|++++|+..|+++.+. .|+. ..+.+.|++++|...++.+
T Consensus 66 -----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~ 131 (258)
T 3uq3_A 66 -----EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAE 131 (258)
T ss_dssp -----HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHH
T ss_pred -----HhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHH
Confidence 111111000 0356777777888888888888888887764 3442 2344556666666666655
Q ss_pred HHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhH
Q 005642 396 TIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475 (686)
Q Consensus 396 ~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 475 (686)
.+.. +.+...+..+...+...|++++|...++++.+. .+.+...
T Consensus 132 ~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~ 175 (258)
T 3uq3_A 132 AYVN----------------------------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARG 175 (258)
T ss_dssp HHCC----------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHcC----------------------------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHH
Confidence 5431 114456778888899999999999999998842 2236888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC------CCCchhHHHHHH
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELD------PENACAYIQLSS 547 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~ 547 (686)
+..++.++.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++.. |++..++..+..
T Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 999999999999999999999987 3344 57889999999999999999999999999988 877666665554
Q ss_pred H
Q 005642 548 I 548 (686)
Q Consensus 548 ~ 548 (686)
+
T Consensus 256 ~ 256 (258)
T 3uq3_A 256 A 256 (258)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.5e-13 Score=129.79 Aligned_cols=179 Identities=14% Similarity=-0.014 Sum_probs=98.7
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 005642 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416 (686)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 416 (686)
|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...++++++..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------- 138 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT----------------- 138 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-----------------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-----------------
Confidence 4555555555555555555555555431 2233444455555555555555555554433221
Q ss_pred chhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCC---hHHH
Q 005642 417 CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGC---LNEA 492 (686)
Q Consensus 417 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A 492 (686)
+.+...+..+...+...+++++|.+.|+++.+ ..| +...+..+..++...|+ +++|
T Consensus 139 -----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A 198 (272)
T 3u4t_A 139 -----------------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLA 198 (272)
T ss_dssp -----------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTT
T ss_pred -----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHH
Confidence 11344555555233333477777777777763 234 45666667777776666 6666
Q ss_pred HHHHHhCC----CCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC
Q 005642 493 VNLIEQMP----FEAD------VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553 (686)
Q Consensus 493 ~~~~~~~~----~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 553 (686)
...+++.. ..|+ ...|..+...+...|++++|...++++++++|+++.++..+..+....+
T Consensus 199 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 199 KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 66666551 1233 2456667777777788888888888888888877777766666554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-12 Score=132.15 Aligned_cols=240 Identities=8% Similarity=0.047 Sum_probs=151.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCC-HHHHHHHHhhCCC---CCchhHHHHHHHHHhC
Q 005642 275 ASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGR-IEDAKHIFRTMPN---KSLISWNSMIVGLSQN 347 (686)
Q Consensus 275 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 347 (686)
+..+...+.+.|++++|+..|+++. +.+..+|+.+..++...|+ +++|+..|+++.. .+...|..+..++...
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~ 179 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL 179 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 3334444444444444444444333 1123334444444444443 4444444444432 3446677777777777
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHH
Q 005642 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNE 427 (686)
Q Consensus 348 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~ 427 (686)
|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++++...
T Consensus 180 g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P--------------------------- 231 (382)
T 2h6f_A 180 RDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV--------------------------- 231 (382)
T ss_dssp TCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT---------------------------
T ss_pred cCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---------------------------
Confidence 77777777777777642 23455666666667777777777777766665531
Q ss_pred HHHCCCCCCHHHHHHHHHHHhc-cCCHHHH-----HHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcC--ChHHHHHHHHh
Q 005642 428 MRNTGVKPTIITFTAILSACDH-CGLVKEG-----QKWFDAMKWQYHIDP-EIEHYSCMVDLFARAG--CLNEAVNLIEQ 498 (686)
Q Consensus 428 m~~~~~~p~~~~~~~ll~~~~~-~g~~~~A-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~ 498 (686)
-+...|+.+..++.. .|..++| ++.+++..+ +.| +...|..+..++.+.| ++++|++.+++
T Consensus 232 -------~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 232 -------RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp -------TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 155566666666666 4554555 477777763 456 5778888888888877 58888888887
Q ss_pred CCCCC-CHHHHHHHHHHHHhcC--------C-hhHHHHHHHHH-HccCCCCchhHHHHHHHHhhc
Q 005642 499 MPFEA-DVGMWSSILRGCVAHG--------D-KGLGRKVAERM-IELDPENACAYIQLSSIFATS 552 (686)
Q Consensus 499 ~~~~p-~~~~~~~li~~~~~~g--------~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 552 (686)
+...| +...+..++..+.+.| + .++|+.+++++ .+.+|.+...|..++..+...
T Consensus 302 ~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 302 LQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 75455 4667788888887764 2 58899999999 899999888888888776543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-12 Score=120.73 Aligned_cols=200 Identities=7% Similarity=-0.043 Sum_probs=159.1
Q ss_pred chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 005642 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413 (686)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 413 (686)
+..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 4567778888888888888888888887752 3456677788888888888888888888776543
Q ss_pred HHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHH
Q 005642 414 YCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEA 492 (686)
Q Consensus 414 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 492 (686)
+.+...+..+...+...|++++|.++++++.+ .+..| +...+..++.++...|++++|
T Consensus 102 --------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 102 --------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 12556677777888888999999999988873 23445 567788888888899999999
Q ss_pred HHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 493 VNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 493 ~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.+.++++. ..| +...+..+...+...|++++|...++++++..|++...+..++.++...|++++|.++++++.+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 161 KEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99888872 334 577788888889999999999999999999888888888888999999999999999998887754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=122.23 Aligned_cols=189 Identities=15% Similarity=0.038 Sum_probs=123.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHH
Q 005642 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMIS 210 (686)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 210 (686)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|...|++..+ .+...|..+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45667777788888888888888888887764 3445666777777788888888887776543 34567777777
Q ss_pred HHHhc-----------CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHH
Q 005642 211 GYISN-----------NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279 (686)
Q Consensus 211 ~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 279 (686)
.+... |++++|+..|++.++.. +-+...+..+..++...|++++|...++++++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77777 77888888887777642 2345666777777777788888887777777776 5667777777
Q ss_pred HHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhh
Q 005642 280 DTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRT 328 (686)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 328 (686)
.+|...|++++|...|++.. +.+...+..+..++...|++++|...|++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77777777777777777654 22344555555555555555555555544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-11 Score=116.24 Aligned_cols=199 Identities=9% Similarity=-0.079 Sum_probs=153.5
Q ss_pred chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 005642 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413 (686)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 413 (686)
+..|..+...+...|++++|+..|+++.+. .+.+...+..+...+...|++++|...++.+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 72 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS-DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------
Confidence 456677777788888888888888877765 23346677777777778888888777777766543
Q ss_pred HHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHH
Q 005642 414 YCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHC-GLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNE 491 (686)
Q Consensus 414 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 491 (686)
+.+..++..+...+... |++++|...++++.+ .+..| +...+..++.++...|++++
T Consensus 73 --------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 73 --------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp --------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred --------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 12556677778888888 899999999888873 22334 36778888888888999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC-CCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 492 AVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDP-ENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 492 A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
|...++++ ...| +...+..+...+...|++++|...++++++..| ++...+..++..+...|++++|..+++.+.+.
T Consensus 132 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 132 AEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 98888877 2334 477788888888899999999999999998888 88888888888888899999999888887764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-11 Score=119.11 Aligned_cols=227 Identities=11% Similarity=-0.003 Sum_probs=158.2
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh----cCChhHHHHHHHhcccCCchhHHHHHH
Q 005642 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK----RGMPSDACKLFSELKVYDTILLNTMIT 311 (686)
Q Consensus 236 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~li~ 311 (686)
+..++..+...+...|++++|...+++..+.+ +...+..+...|.. .+++++|...|+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~--------------- 66 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYA--------------- 66 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH---------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHH---------------
Confidence 34444555555555556666666555555522 33444445555555 555555555554
Q ss_pred HHHhCCCHHHHHHHHhhCCC-CCchhHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----c
Q 005642 312 VYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----I 382 (686)
Q Consensus 312 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~ 382 (686)
+..+ .++.++..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .
T Consensus 67 ----------------~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 67 ----------------KACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp ----------------HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC
T ss_pred ----------------HHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcc
Confidence 4332 256677777788888 888888888888888764 66777777777777 8
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHH
Q 005642 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDH----CGLVKEGQK 458 (686)
Q Consensus 383 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~ 458 (686)
+++++|...+++..+.+ +...+..+...+.. .+++++|.+
T Consensus 128 ~~~~~A~~~~~~a~~~~------------------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~ 171 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN------------------------------------DGDGCTILGSLYDAGRGTPKDLKKALA 171 (273)
T ss_dssp CCHHHHHHHHHHHHHTT------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC------------------------------------cHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88888888887776654 33445555556665 788999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHH
Q 005642 459 WFDAMKWQYHIDPEIEHYSCMVDLFAR----AGCLNEAVNLIEQMPFEADVGMWSSILRGCVA----HGDKGLGRKVAER 530 (686)
Q Consensus 459 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 530 (686)
.|++..+. .+...+..+..+|.. .+++++|...|++.....+...+..+...+.. .+++++|...+++
T Consensus 172 ~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 172 SYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 99988732 256778888888888 89999999999887322336777888888888 8999999999999
Q ss_pred HHccCCCCc
Q 005642 531 MIELDPENA 539 (686)
Q Consensus 531 ~~~~~p~~~ 539 (686)
+.+..|+++
T Consensus 248 a~~~~~~~a 256 (273)
T 1ouv_A 248 GCKLGAKGA 256 (273)
T ss_dssp HHHHTCHHH
T ss_pred HHHcCCHHH
Confidence 999888653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-12 Score=133.33 Aligned_cols=274 Identities=12% Similarity=0.008 Sum_probs=184.7
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHcCCCch---HHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCC
Q 005642 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDD---VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318 (686)
Q Consensus 242 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 318 (686)
.+...+...|++++|...++++++.+.... ..++..+...|...|++++|...|++.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-------------------- 112 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD-------------------- 112 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--------------------
Confidence 344455566666666666666666532211 135666777777777777777777632
Q ss_pred HHHHHHHHhhCCC--CCchhHHHHHHHHHhCCChhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCC-------
Q 005642 319 IEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL----DLRM-DKFSLASVISACANISS------- 384 (686)
Q Consensus 319 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~------- 384 (686)
.++.+.... .....+..+...|...|++++|...|++..+. +-.| ...++..+...+...|+
T Consensus 113 ----l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 188 (411)
T 4a1s_A 113 ----LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNP 188 (411)
T ss_dssp ----HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ----HHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccc
Confidence 222222221 12245666777777777777777777766543 1111 23466677777788888
Q ss_pred ----------hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH
Q 005642 385 ----------LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKP-TIITFTAILSACDHCGLV 453 (686)
Q Consensus 385 ----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~ 453 (686)
+++|...+.+..+ +.... +..+ ...++..+...+...|++
T Consensus 189 ~~~~~~a~~~~~~A~~~~~~al~--------------------------~~~~~---~~~~~~~~~~~~la~~~~~~g~~ 239 (411)
T 4a1s_A 189 GKFGDDVKEALTRAVEFYQENLK--------------------------LMRDL---GDRGAQGRACGNLGNTYYLLGDF 239 (411)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHH--------------------------HHHHH---TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHH--------------------------HHHHc---CCHHHHHHHHHHHHHHHHHcCCh
Confidence 6666666654432 22222 1111 235677888889999999
Q ss_pred HHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCC---CHHHHHHHHHHHHhcCCh
Q 005642 454 KEGQKWFDAMKWQYHIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQMP-----FEA---DVGMWSSILRGCVAHGDK 521 (686)
Q Consensus 454 ~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p---~~~~~~~li~~~~~~g~~ 521 (686)
++|.+.+++..+...-.++ ...+..+..+|...|++++|...+++.. ... ....+..+...+...|++
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999998642211112 3478899999999999999999998772 111 146688889999999999
Q ss_pred hHHHHHHHHHHccCCC------CchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 522 GLGRKVAERMIELDPE------NACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 522 ~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
++|...++++++..+. ...++..++.+|...|++++|.+++++..+.
T Consensus 320 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 320 NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999999999986443 2347889999999999999999999988764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.3e-12 Score=121.02 Aligned_cols=200 Identities=12% Similarity=0.062 Sum_probs=138.7
Q ss_pred CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 005642 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412 (686)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 412 (686)
....|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...++.+.+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------- 87 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELD------------- 87 (243)
T ss_dssp --------------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------
Confidence 3456777777888888888888888888764 23456677777778888888888888887766543
Q ss_pred HHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005642 413 FYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492 (686)
Q Consensus 413 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 492 (686)
+.+..++..+...+...|++++|.+.++++.+. .+.+...+..++..+.+.|++++|
T Consensus 88 ---------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 88 ---------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHH
T ss_pred ---------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHH
Confidence 125566777777788888888888888887732 223677788888888888888888
Q ss_pred HHHHHhCC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 493 VNLIEQMP-F-EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 493 ~~~~~~~~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
...++++. . +.+...+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 145 LPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 88888762 3 33577788888888888888888888888888888888888888888888888888888888887643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=128.25 Aligned_cols=280 Identities=13% Similarity=0.025 Sum_probs=184.6
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCch---HHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHH
Q 005642 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD---VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312 (686)
Q Consensus 236 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 312 (686)
....+......+...|++++|...++++.+.+.... ..++..+...|...|++++|...+++.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------- 73 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD-------------- 73 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--------------
Confidence 344444555556666666666666666666532211 245666777777777777777776632
Q ss_pred HHhCCCHHHHHHHHhhCCCC--CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC-
Q 005642 313 YSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMD----KFSLASVISACANISS- 384 (686)
Q Consensus 313 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~- 384 (686)
..+......+ ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 74 ----------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 143 (406)
T 3sf4_A 74 ----------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 143 (406)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCc
Confidence 2222222211 124566666777777777777777776654210 011 3356666777777777
Q ss_pred -------------------hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 005642 385 -------------------LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKP-TIITFTAIL 444 (686)
Q Consensus 385 -------------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll 444 (686)
+++|...+....+ ++... +..| ...++..+.
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~--------------------------~~~~~---~~~~~~~~~~~~la 194 (406)
T 3sf4_A 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLS--------------------------LVTAL---GDRAAQGRAFGNLG 194 (406)
T ss_dssp CC-------CCCCHHHHHHHHHHHHHHHHHHH--------------------------HHHHT---TCHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHH--------------------------HHHhc---cCcHHHHHHHHHHH
Confidence 6666666654432 22211 1111 234677888
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHH
Q 005642 445 SACDHCGLVKEGQKWFDAMKWQYHIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQMP----FEAD----VGMWSSIL 512 (686)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~li 512 (686)
..+...|++++|...+++..+...-.++ ..++..++..|...|++++|...+++.. ..++ ..++..+.
T Consensus 195 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 274 (406)
T 3sf4_A 195 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 274 (406)
T ss_dssp HHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHH
Confidence 8899999999999999988643221222 3478889999999999999999998762 1112 45678888
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCC------chhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPEN------ACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..+...|++++|...++++++..+.. ..++..++.+|...|++++|.+++++..+.
T Consensus 275 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 275 NTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999999998865432 557889999999999999999999987764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-11 Score=120.65 Aligned_cols=224 Identities=9% Similarity=-0.027 Sum_probs=160.9
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccC
Q 005642 309 MITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD--KFSLASVISACANIS 383 (686)
Q Consensus 309 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~ 383 (686)
....+...|++++|...|+++.+ .+...+..+...+...|++++|+..|++..+.+..|+ ...+..+...+...|
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 33444444444444444444432 3445777788888888888888888888877432222 234677777788888
Q ss_pred ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 005642 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463 (686)
Q Consensus 384 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 463 (686)
++++|...++.+.+.. +.+..++..+...+...|++++|.+.+++.
T Consensus 89 ~~~~A~~~~~~a~~~~----------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD----------------------------------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp CHHHHHHHHHHHHHHS----------------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHhcC----------------------------------cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888887776643 124567888888899999999999999988
Q ss_pred HHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---hhHHHHHHHHHHccC--
Q 005642 464 KWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGD---KGLGRKVAERMIELD-- 535 (686)
Q Consensus 464 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-- 535 (686)
. ...| +...+..+...+...+++++|.+.|+++ ...| +...+..+...+...|+ .++|...++++++..
T Consensus 135 l---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 211 (272)
T 3u4t_A 135 I---RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP 211 (272)
T ss_dssp C---CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG
T ss_pred h---hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc
Confidence 7 3355 5777888883444456999999999887 3444 46777788888888888 888999999888865
Q ss_pred -CCC-----chhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 536 -PEN-----ACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 536 -p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
|+. ..+|..++.+|...|++++|.++++++.+..
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 212 GGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 432 2578889999999999999999999888743
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-12 Score=133.58 Aligned_cols=302 Identities=13% Similarity=0.071 Sum_probs=205.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHccCChhhHHHHHHHHHHc----CCCc-hH
Q 005642 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED----ASTLASVLSACSSLGFLEHGKQVHGHACKV----GVID-DV 272 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~ 272 (686)
...+......+...|++++|+..|++..+.+ +.+ ..++..+...+...|++++|...++++.+. +..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4456667778888888999999888887752 223 246677777888889999988888876553 2122 24
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC--CchhHHHHHHHHHhCCC-
Q 005642 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGS- 349 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~- 349 (686)
.++..+...|...|++++|...+++.. ++......+ ...++..+...+...|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 143 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHL------------------------DISRELNDKVGEARALYNLGNVYHAKGKS 143 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HHHHhcccccchHHHHHHHHHHHHHcCCc
Confidence 567778888888899999988887543 222211111 12345555566666666
Q ss_pred -------------------hhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchh
Q 005642 350 -------------------PIEALDLFCNMNKL----DLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405 (686)
Q Consensus 350 -------------------~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 405 (686)
+++|...+++.... +..| ...++..+...+...|++++|...+++..+..
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 217 (406)
T 3sf4_A 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA------ 217 (406)
T ss_dssp CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH------
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH------
Confidence 66666666655431 1111 12456677777888888888888887665421
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHH
Q 005642 406 ISTSLVDFYCKCGYDALALFNEMRNTGVK-PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE----IEHYSCMV 480 (686)
Q Consensus 406 ~~~~li~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~ 480 (686)
.+ .+.. ....++..+...+...|++++|...+++..+...-.++ ..++..++
T Consensus 218 --------------------~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 274 (406)
T 3sf4_A 218 --------------------KE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 274 (406)
T ss_dssp --------------------HH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------------Hh---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHH
Confidence 11 0100 01346778888899999999999999987632111111 56788899
Q ss_pred HHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccC------CCCchhHHHHH
Q 005642 481 DLFARAGCLNEAVNLIEQMP----FEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELD------PENACAYIQLS 546 (686)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~ 546 (686)
..|...|++++|...+++.. ..++ ...+..+...+...|++++|...+++++++. |....++..++
T Consensus 275 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 354 (406)
T 3sf4_A 275 NTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLS 354 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 99999999999999998772 1122 5567888899999999999999999998853 22356778888
Q ss_pred HHHhhcCCcch
Q 005642 547 SIFATSGEWEK 557 (686)
Q Consensus 547 ~~~~~~g~~~~ 557 (686)
.++...|+...
T Consensus 355 ~~~~~~g~~~~ 365 (406)
T 3sf4_A 355 DLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHhhHhHH
Confidence 88888887754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-12 Score=123.27 Aligned_cols=211 Identities=12% Similarity=0.054 Sum_probs=150.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 005642 306 LNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382 (686)
Q Consensus 306 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 382 (686)
|..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 33344444444444444444444432 345677778888888888888888888887752 34567777888888888
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 005642 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462 (686)
Q Consensus 383 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 462 (686)
|++++|.+.++.+.+.. +.+...+..+...+...|++++|..++++
T Consensus 105 ~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG----------------------------------MENGDLFYMLGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp TCHHHHHHHHHHHHHHT----------------------------------CCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99998888888776643 22556777788888999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FE-ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 463 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
+.+. .+.+...+..++..+.+.|++++|...++++. .. .+...+..+...+...|++++|...++++++..|+++.
T Consensus 151 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 151 AVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 8842 22367889999999999999999999999873 33 35788999999999999999999999999999999988
Q ss_pred hHHHHHHHHhhcC
Q 005642 541 AYIQLSSIFATSG 553 (686)
Q Consensus 541 ~~~~l~~~~~~~g 553 (686)
++..+..+....|
T Consensus 229 ~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 229 ALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHTC------
T ss_pred HHHHHHHHHhhcc
Confidence 8777766554433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-12 Score=124.88 Aligned_cols=177 Identities=12% Similarity=-0.061 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHHHHHcCC---CCChhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHH
Q 005642 119 AALEYGKQIHSHILVNGL---DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARR 192 (686)
Q Consensus 119 ~~~~~a~~i~~~~~~~g~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 192 (686)
++++.|...++.+++... +.+..++..+...|...|++++|...|+++.+ .+...|..+...+...|++++|..
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 566777777777776532 12456777788888888888888888887763 345566666677777777777777
Q ss_pred HHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC
Q 005642 193 VFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269 (686)
Q Consensus 193 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 269 (686)
.|++..+ .+..+|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+....... +
T Consensus 99 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~ 175 (275)
T 1xnf_A 99 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-D 175 (275)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-C
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 7765543 34566777777777777777777777777663 3443333334444455566666666666655543 2
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 270 DDVIVASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 270 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
++...+ .++..+...++.++|...+.+..
T Consensus 176 ~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 176 KEQWGW-NIVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp CCSTHH-HHHHHHTTSSCHHHHHHHHHHHC
T ss_pred cchHHH-HHHHHHHHhcCHHHHHHHHHHHh
Confidence 222222 24555555555566666655443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-12 Score=124.32 Aligned_cols=238 Identities=11% Similarity=-0.036 Sum_probs=149.6
Q ss_pred HhcCChhHHHHHHHhcccC-------CchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhh
Q 005642 283 SKRGMPSDACKLFSELKVY-------DTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIE 352 (686)
Q Consensus 283 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 352 (686)
...|++++|...|+++... +..++..+...+...|++++|...|+++.+ .+..+|..+...+...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 3456677777777765531 233455556666666666666666655432 234555556666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCC
Q 005642 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTG 432 (686)
Q Consensus 353 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~ 432 (686)
|+..|+++.+.. +.+..++..+..++...|++++|...++.+.+..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------------------------------- 141 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--------------------------------- 141 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------------------------------
Confidence 666666655531 2234455555555555666665555555554432
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-----HH
Q 005642 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD-----VG 506 (686)
Q Consensus 433 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~ 506 (686)
|+.......+..+...|++++|...+++.... .+++...+ .++..+...++.++|...+++.. ..|+ ..
T Consensus 142 --~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (275)
T 1xnf_A 142 --PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 216 (275)
T ss_dssp --TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred --CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccH
Confidence 22222233333445668999999999887743 23344444 46777788888899999988873 3332 56
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHH
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 562 (686)
.|..+...+...|++++|...++++++..|++.. ..+.++...|++++|.+.+
T Consensus 217 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 217 TNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 7888999999999999999999999999997744 3466778889999888765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=9.1e-12 Score=126.41 Aligned_cols=225 Identities=10% Similarity=0.028 Sum_probs=148.5
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 005642 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS-LELGEQVFARVTIIGLDSDQIISTSLVDFY 414 (686)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 414 (686)
.|..+...+.+.|++++|+..|+++.+.. +-+...|..+..++...|+ +++|+..++++++.. +.+...|..+...|
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 45555555555555566665555555531 1223444555555555554 555555555555543 22344444444444
Q ss_pred Hhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHh-cCChH
Q 005642 415 CKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFAR-AGCLN 490 (686)
Q Consensus 415 ~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~~ 490 (686)
...|+ +|+..|+++.+.... +...|..+..++.+.|++++|+..++++++ +.| +...|..+..++.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcch
Confidence 44444 555555555544322 677888888888888999999999998883 355 67888888888888 56657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC--------
Q 005642 491 EA-----VNLIEQM-PFEA-DVGMWSSILRGCVAHG--DKGLGRKVAERMIELDPENACAYIQLSSIFATSG-------- 553 (686)
Q Consensus 491 ~A-----~~~~~~~-~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 553 (686)
+| ++.|++. ...| +...|..+...+...| ++++|+..++++ +..|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 3666665 3455 4677888888888777 688888888887 888888888888898888864
Q ss_pred -CcchHHHHHHHH-Hh
Q 005642 554 -EWEKSSLIRDIM-RE 567 (686)
Q Consensus 554 -~~~~a~~~~~~~-~~ 567 (686)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 257888888877 44
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-11 Score=118.13 Aligned_cols=207 Identities=12% Similarity=-0.022 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChh
Q 005642 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351 (686)
Q Consensus 272 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 351 (686)
...+..+...+...|++++|...|+++.. ....+...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------------------------~~~~~~~~~~~la~~~~~~~~~~ 88 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE----------------------------IDPSSADAHAALAVVFQTEMEPK 88 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH----------------------------HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------------------cCCChHHHHHHHHHHHHHcCCHH
Confidence 45566666667777777777766664321 01234556777777777888888
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHC
Q 005642 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNT 431 (686)
Q Consensus 352 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~ 431 (686)
+|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+
T Consensus 89 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------------------------------- 135 (252)
T 2ho1_A 89 LADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT-------------------------------- 135 (252)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCT--------------------------------
T ss_pred HHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCc--------------------------------
Confidence 8888888777652 3356667777777888888888877777665411
Q ss_pred CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 005642 432 GVKP-TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGM 507 (686)
Q Consensus 432 ~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 507 (686)
..| +...+..+...+...|++++|.+.++++.+. .| +...+..++.++...|++++|...++++ ...| +...
T Consensus 136 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 211 (252)
T 2ho1_A 136 -LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARS 211 (252)
T ss_dssp -TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHH
T ss_pred -cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 122 4456777788888899999999999998742 34 5788889999999999999999999887 3334 5777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYI 543 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 543 (686)
+..+...+...|+.++|...++++.+..|+++....
T Consensus 212 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 212 LLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888999999999999999999999998766443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.3e-12 Score=126.14 Aligned_cols=273 Identities=13% Similarity=0.025 Sum_probs=178.4
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCCch---HHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCH
Q 005642 243 VLSACSSLGFLEHGKQVHGHACKVGVIDD---VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319 (686)
Q Consensus 243 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 319 (686)
....+...|++++|...++++.+...... ...+..+...|...|++++|...+++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------- 70 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL-------------------- 70 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------
Confidence 34445556666666666666655432211 2455666677777777777777666332
Q ss_pred HHHHHHHhhCCCC--CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC--------
Q 005642 320 EDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMD----KFSLASVISACANISS-------- 384 (686)
Q Consensus 320 ~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~-------- 384 (686)
++......+ ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 71 ----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (338)
T 3ro2_A 71 ----TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 146 (338)
T ss_dssp ----HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC
T ss_pred ----HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhh
Confidence 121111111 123556666677777777777777766554210 111 2356666677777777
Q ss_pred ------------hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 005642 385 ------------LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKP-TIITFTAILSACDHCG 451 (686)
Q Consensus 385 ------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g 451 (686)
+++|...+....+ +.... +..| ...++..+...+...|
T Consensus 147 ~~~~~~~~a~~~~~~A~~~~~~a~~--------------------------~~~~~---~~~~~~~~~~~~l~~~~~~~~ 197 (338)
T 3ro2_A 147 DTGEFPEDVRNALQAAVDLYEENLS--------------------------LVTAL---GDRAAQGRAFGNLGNTHYLLG 197 (338)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHH--------------------------HHHHH---TCHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH--------------------------HHHhc---CCHHHHHHHHHHHHHHHHHhC
Confidence 6666666654432 22221 1111 2346777888889999
Q ss_pred CHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcC
Q 005642 452 LVKEGQKWFDAMKWQYHIDP----EIEHYSCMVDLFARAGCLNEAVNLIEQMP----FEAD----VGMWSSILRGCVAHG 519 (686)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~li~~~~~~g 519 (686)
++++|.+.+++..+...-.+ ...++..++..+...|++++|...+++.. ..++ ...+..+...+...|
T Consensus 198 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (338)
T 3ro2_A 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 277 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc
Confidence 99999999998763211111 23478889999999999999999998762 1112 456788888999999
Q ss_pred ChhHHHHHHHHHHccCCCC------chhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 520 DKGLGRKVAERMIELDPEN------ACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
++++|...++++++..|.. ..++..++.+|...|++++|..++++..+.
T Consensus 278 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 278 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999998865432 347888999999999999999999988864
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-11 Score=114.09 Aligned_cols=211 Identities=9% Similarity=-0.082 Sum_probs=152.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCCh
Q 005642 271 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350 (686)
Q Consensus 271 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 350 (686)
+...+..+...+...|++++|...|+++.. ....+...|..+...+...|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~ 58 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALK----------------------------SDPKNELAWLVRAEIYQYLKVN 58 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------HCTTCHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----------------------------hCccchHHHHHHHHHHHHcCCh
Confidence 445566666666666666666666664321 1112455677777777888888
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHH
Q 005642 351 IEALDLFCNMNKLDLRMDKFSLASVISACANI-SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMR 429 (686)
Q Consensus 351 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~ 429 (686)
++|...|+++.+.. +.+..++..+...+... |++++|...++.+.+.+..
T Consensus 59 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------------------- 109 (225)
T 2vq2_A 59 DKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTY---------------------------- 109 (225)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTC----------------------------
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCC----------------------------
Confidence 88888888777652 33566777777788888 8888888887776651111
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC--CCH
Q 005642 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FE--ADV 505 (686)
Q Consensus 430 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~--p~~ 505 (686)
+.+...+..+...+...|++++|...++++.+. .| +...+..++.++.+.|++++|...++++. .. .+.
T Consensus 110 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 182 (225)
T 2vq2_A 110 ----PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182 (225)
T ss_dssp ----SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCH
T ss_pred ----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 113466777788888899999999999988742 34 57888889999999999999999998872 33 356
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 545 (686)
..+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus 183 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 183 DDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 6777777788899999999999999998999887655433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-11 Score=109.68 Aligned_cols=166 Identities=10% Similarity=0.055 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSAC 447 (686)
Q Consensus 368 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 447 (686)
+...|..+...+...|++++|.+.|+++++.. +-+..++..+...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~la~~~ 49 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD----------------------------------PNNVETLLKLGKTY 49 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHH
Confidence 34556666666666666666666666665542 11567788888888
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHH
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~ 525 (686)
.+.|++++|...+...... .+.+...+..+...+...++++.|...+++.. ..| +...+..+...+...|++++|+
T Consensus 50 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 127 (184)
T 3vtx_A 50 MDIGLPNDAIESLKKFVVL--DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAI 127 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHH
Confidence 8999999999999988732 22357778888888999999999999988873 344 5778888999999999999999
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 526 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
..++++++.+|+++.+|..++.+|.+.|++++|.+.+++..+..
T Consensus 128 ~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 128 EAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999887643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=6e-11 Score=121.79 Aligned_cols=302 Identities=10% Similarity=-0.038 Sum_probs=192.4
Q ss_pred HhcCChhHHHHHHHHHHHC--CCCcCHH--HHHHHHHHH--HccCChhhHH-----------HHHHHHHHcCCCchH---
Q 005642 213 ISNNEDTEALLLFHKMRRN--GVLEDAS--TLASVLSAC--SSLGFLEHGK-----------QVHGHACKVGVIDDV--- 272 (686)
Q Consensus 213 ~~~g~~~~A~~~~~~m~~~--g~~p~~~--~~~~ll~~~--~~~~~~~~a~-----------~~~~~~~~~g~~~~~--- 272 (686)
.+.+++++|..+++++.+. .+..|.. .|..++..- .-.++++.+. +.++.+.....+.+.
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 4577888888888777553 2323332 333333221 1222333333 555554432111110
Q ss_pred -HHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC--CchhHHHHHHHHHhCCC
Q 005642 273 -IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGS 349 (686)
Q Consensus 273 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~ 349 (686)
..+......+...|++++|...|++.. +++.....+ ...++..+...|...|+
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al------------------------~~~~~~~~~~~~a~~~~~lg~~~~~~~~ 158 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAE------------------------SKLIFVKDRIEKAEFFFKMSESYYYMKQ 158 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------TTGGGCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH------------------------HHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 112224555666677777777666332 222222211 22567778888888888
Q ss_pred hhhHHHHHHHHHHCCCC-C-----CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHH
Q 005642 350 PIEALDLFCNMNKLDLR-M-----DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA 423 (686)
Q Consensus 350 ~~~A~~~~~~m~~~g~~-p-----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~ 423 (686)
+++|+..+++..+.-.. + ...++..+...+...|++++|...+..+.+.
T Consensus 159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------------- 213 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM------------------------- 213 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-------------------------
Confidence 88888888877643111 1 1346778888899999999999999876542
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHh---cCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 005642 424 LFNEMRNTGVKP-TIITFTAILSACDHCGLVKEGQKWFDAMKWQ---YHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQ 498 (686)
Q Consensus 424 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 498 (686)
..+. +..+ ...++..+...|...|++++|.+.+++..+. .+..| ...++..++.++.+.|++++|...+++
T Consensus 214 -~~~~---~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 214 -AEAE---KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289 (383)
T ss_dssp -HHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHc---CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1111 1111 2246778888999999999999999998731 12323 467889999999999999999999988
Q ss_pred CC------CCCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 499 MP------FEAD-VGMWSSILRGCVAHGD---KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 499 ~~------~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.. ..|. ...+..+...+...|+ .++|+..+++. ...|.....+..++.+|...|++++|..++++..+.
T Consensus 290 al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 290 GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 72 1222 2335667777888888 77788877776 334445567889999999999999999999988764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.7e-11 Score=118.12 Aligned_cols=280 Identities=13% Similarity=0.079 Sum_probs=187.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHccCChhhHHHHHHHHHHc----CCCc-hHHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLED----ASTLASVLSACSSLGFLEHGKQVHGHACKV----GVID-DVIV 274 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~ 274 (686)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +..+ ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455667778888888888888887752 222 356667777888888888888888876553 2122 3456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC--CchhHHHHHHHHHhCCC---
Q 005642 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGS--- 349 (686)
Q Consensus 275 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~--- 349 (686)
+..+...|...|++++|...+++.. ++......+ ...++..+...+...|+
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 141 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHL------------------------DISRELNDKVGEARALYNLGNVYHAKGKSFG 141 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH------------------------HHHHHhcCchHHHHHHHHHHHHHHHcCcccc
Confidence 7788888888999999988887532 222222111 12345556666666666
Q ss_pred -----------------hhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHH
Q 005642 350 -----------------PIEALDLFCNMNKL----DLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407 (686)
Q Consensus 350 -----------------~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 407 (686)
+++|...+++.... +..| ...++..+...+...|++++|...++.+.+..
T Consensus 142 ~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------- 213 (338)
T 3ro2_A 142 CPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-------- 213 (338)
T ss_dssp SSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--------
Confidence 66666666655431 1111 12356677777888888888888888665421
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHH
Q 005642 408 TSLVDFYCKCGYDALALFNEMRNTGV-KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE----IEHYSCMVDL 482 (686)
Q Consensus 408 ~~li~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~ 482 (686)
... +. .....++..+...+...|++++|.+.+++..+...-.++ ..++..+...
T Consensus 214 ------------------~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (338)
T 3ro2_A 214 ------------------KEF---GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 272 (338)
T ss_dssp ------------------HHH---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------Hhc---CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 111 10 012346777888889999999999999987632111112 5678889999
Q ss_pred HHhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 005642 483 FARAGCLNEAVNLIEQMP-F---EAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 537 (686)
+...|++++|...+++.. . .++ ..++..+...+...|++++|...+++++++.+.
T Consensus 273 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 273 YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999999999998872 1 111 446778889999999999999999999987664
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.1e-11 Score=122.52 Aligned_cols=280 Identities=12% Similarity=0.052 Sum_probs=189.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHccCChhhHHHHHHHHHHc----C-CCchHHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA----STLASVLSACSSLGFLEHGKQVHGHACKV----G-VIDDVIV 274 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~ 274 (686)
.+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...+++.++. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34456667778888888888888887752 2222 35667777777888888888888777653 1 1224456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC--CCchhHHHHHHHHHhCCC---
Q 005642 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGS--- 349 (686)
Q Consensus 275 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~--- 349 (686)
+..+...|...|++++|...|++.. +++..... ....++..+...|...|+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHL------------------------TLARQLGDRLSEGRALYNLGNVYHAKGKHLG 184 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH------------------------HHHHHhhchHHHHHHHHHHHHHHHHcCcccc
Confidence 7788888888999999888887542 22222211 112355666666666666
Q ss_pred --------------hhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHH
Q 005642 350 --------------PIEALDLFCNMNKL----DLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410 (686)
Q Consensus 350 --------------~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 410 (686)
+++|+..+++..+. +..+ ...++..+...+...|++++|...+++..+..
T Consensus 185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------- 253 (411)
T 4a1s_A 185 QRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA----------- 253 (411)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-----------
Confidence 66676666665432 1111 22466677777888888888888888665421
Q ss_pred HHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHhc
Q 005642 411 VDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP----EIEHYSCMVDLFARA 486 (686)
Q Consensus 411 i~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~ 486 (686)
.... .......++..+...+...|++++|.+.+++......-.. ...++..+..++...
T Consensus 254 ---------------~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (411)
T 4a1s_A 254 ---------------REFG--DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL 316 (411)
T ss_dssp ---------------HHHT--CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ---------------HhcC--CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 1100 0000124677888889999999999999998764221111 256788899999999
Q ss_pred CChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 487 GCLNEAVNLIEQMP-F---EAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 487 g~~~~A~~~~~~~~-~---~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
|++++|...+++.. . .++ ...+..+...+...|++++|...+++++++.+
T Consensus 317 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 99999999998872 1 111 44678888999999999999999999999776
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-11 Score=128.69 Aligned_cols=207 Identities=8% Similarity=-0.042 Sum_probs=158.8
Q ss_pred HHHHHHHHhhCCC---CCchhHHHHHHHHHhCCCh-hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 005642 319 IEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSP-IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394 (686)
Q Consensus 319 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 394 (686)
++++...++.... .+...|..+...+...|++ ++|+..|++..+.. +-+...+..+..++...|++++|...|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555555554432 2445666666667777777 77777777766542 22355666666666666666666666665
Q ss_pred HHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHH
Q 005642 395 VTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHC---------GLVKEGQKWFDAMKW 465 (686)
Q Consensus 395 ~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---------g~~~~A~~~~~~~~~ 465 (686)
+++. .|+...+..+...+... |++++|++.+++..+
T Consensus 163 al~~-----------------------------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 207 (474)
T 4abn_A 163 ALTH-----------------------------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ 207 (474)
T ss_dssp HHTT-----------------------------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhh-----------------------------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH
Confidence 5533 35567777788888888 999999999999884
Q ss_pred hcCCCC-ChhHHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 005642 466 QYHIDP-EIEHYSCMVDLFARA--------GCLNEAVNLIEQM-PFEA----DVGMWSSILRGCVAHGDKGLGRKVAERM 531 (686)
Q Consensus 466 ~~~~~p-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~ 531 (686)
+.| +...|..+..+|... |++++|.+.|++. ...| +...|..+...+...|++++|+..++++
T Consensus 208 ---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 208 ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345 688999999999998 9999999999988 3455 6888999999999999999999999999
Q ss_pred HccCCCCchhHHHHHHHHhhcCCcchHHHHHHH
Q 005642 532 IELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564 (686)
Q Consensus 532 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (686)
++++|+++.++..++.++...|++++|.+.+++
T Consensus 285 l~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 285 AALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999975543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-08 Score=107.34 Aligned_cols=214 Identities=10% Similarity=-0.031 Sum_probs=114.0
Q ss_pred HHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 322 AKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEAL-DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 322 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
...+|+++.. .++..|-..+..+.+.|+.++|. .+|++.... ++.+...+...+....+.|+++.|.++|+.+++
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344554433 24556666666667777777775 777777754 334444455566666777788888888877665
Q ss_pred hCC---------Cc------------chhHHHHHHHHHHhchh--HHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCC
Q 005642 398 IGL---------DS------------DQIISTSLVDFYCKCGY--DALALFNEMRNT-GVKPTIITFTAILSACDH-CGL 452 (686)
Q Consensus 398 ~~~---------~~------------~~~~~~~li~~~~~~~~--~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~-~g~ 452 (686)
... .| ...+|...+....+.|. .|..+|.+..+. +.. ....|...+..-.+ .++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCC
Confidence 310 01 12244444444444443 555666665544 111 11222221111112 233
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChhHHHHH
Q 005642 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA----DVGMWSSILRGCVAHGDKGLGRKV 527 (686)
Q Consensus 453 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~li~~~~~~g~~~~A~~~ 527 (686)
.+.|..+|+...+. .+.+...+...++.....|+.+.|..+|++.. ..| ....|...+.--...|+.+.+..+
T Consensus 486 ~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 486 TKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666533 22244445555555556666666666666552 222 134455555555566666666666
Q ss_pred HHHHHccCCCCc
Q 005642 528 AERMIELDPENA 539 (686)
Q Consensus 528 ~~~~~~~~p~~~ 539 (686)
.+++.+..|+++
T Consensus 564 ~~R~~~~~P~~~ 575 (679)
T 4e6h_A 564 EKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHSTTCC
T ss_pred HHHHHHhCCCCc
Confidence 666666666543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.4e-11 Score=120.36 Aligned_cols=155 Identities=11% Similarity=-0.030 Sum_probs=100.3
Q ss_pred HHHHHHHhcCChHHHHHHHhccCC-----CC----hhhHHHHHHHHHccCCHHHHHHHHhhcCC-----CC-----hhhH
Q 005642 145 SLVNLYGKCGDFNSANQVLNMMKE-----PD----DFCLSALISGYANCGKMNDARRVFDRTTD-----TS-----SVMW 205 (686)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~ 205 (686)
.....+...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+ ++ ..++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 355667778888888888877753 22 23566667777777777777777765432 11 3467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHccCChhhHHHHHHHHHHc----CC-CchHHHH
Q 005642 206 NSMISGYISNNEDTEALLLFHKMRRN----GVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKV----GV-IDDVIVA 275 (686)
Q Consensus 206 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~ 275 (686)
+.+...|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|...+++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 77777777777777777777776542 1111 1235666667777777777777777776662 22 3345566
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcc
Q 005642 276 SALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 276 ~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
..+...|.+.|++++|...+++..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777777776543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-10 Score=104.05 Aligned_cols=169 Identities=11% Similarity=0.059 Sum_probs=137.5
Q ss_pred CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 005642 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412 (686)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 412 (686)
++..|..+...|.+.|++++|+..|++..+.. +-+..++..+..++.+.|++++|...+..+.....
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~------------ 70 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT------------ 70 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc------------
Confidence 45678888888888899999999988888752 33566777888888888998888888887765431
Q ss_pred HHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHH
Q 005642 413 FYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNE 491 (686)
Q Consensus 413 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 491 (686)
.+...+..+...+...++++.|.+.+.+..+ ..| +...+..++.+|.+.|++++
T Consensus 71 ----------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~ 125 (184)
T 3vtx_A 71 ----------------------TSAEAYYILGSANFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDK 125 (184)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchh
Confidence 2455666777788888999999999999873 344 67889999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 005642 492 AVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 492 A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 539 (686)
|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++
T Consensus 126 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 126 AIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 99999987 3445 578899999999999999999999999999999654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-10 Score=128.21 Aligned_cols=163 Identities=12% Similarity=0.119 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005642 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACD 448 (686)
Q Consensus 369 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 448 (686)
..+++.+...+.+.|++++|++.|+++++.. | -+..++..+..++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P--------------------------------~~~~a~~nLg~~l~ 54 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--P--------------------------------EFAAAHSNLASVLQ 54 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--S--------------------------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C--------------------------------CCHHHHHHHHHHHH
Confidence 3456666666667777777666666665542 1 15678888899999
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 005642 449 HCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~ 525 (686)
+.|++++|++.|++..+ +.| +...|..++.+|.+.|++++|++.|++. .+.| +...|..+...+...|++++|+
T Consensus 55 ~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi 131 (723)
T 4gyw_A 55 QQGKLQEALMHYKEAIR---ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI 131 (723)
T ss_dssp HTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999883 456 5889999999999999999999999987 4556 5788999999999999999999
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 526 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..++++++++|+++.++..++.+|...|+|++|.+.++++.+.
T Consensus 132 ~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 132 ASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999888753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-10 Score=115.89 Aligned_cols=234 Identities=12% Similarity=0.105 Sum_probs=164.0
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CC-
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKL-------DLRMDKFSLASVISACANISSLELGEQVFARVTII------GL- 400 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 400 (686)
.++..+...+...|++++|...|+++.+. ..+.....+..+...+...|++++|...++.+++. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 56788888899999999999999888763 22334566778888999999999999999988764 22
Q ss_pred CcchhHHHHHHHHHHhchh--HHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc----
Q 005642 401 DSDQIISTSLVDFYCKCGY--DALALFNEMRNT------GVKP-TIITFTAILSACDHCGLVKEGQKWFDAMKWQY---- 467 (686)
Q Consensus 401 ~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---- 467 (686)
+.....+..+...|...|+ +|...+++..+. +..| ...++..+...+...|++++|.++++++.+..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2345577788888888887 888888887754 2223 33567778888889999999999999887421
Q ss_pred -CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC----------CCCC-------HHHHHHHHHHHHhcCChhHHHHHH
Q 005642 468 -HIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP----------FEAD-------VGMWSSILRGCVAHGDKGLGRKVA 528 (686)
Q Consensus 468 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-------~~~~~~li~~~~~~g~~~~A~~~~ 528 (686)
+..| ...++..+..+|...|++++|.+.++++. ..+. ...+......+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1133 35678888889999999999998887762 1111 122333334445566777777788
Q ss_pred HHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 529 ERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 529 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
++.....|..+.++..++.+|...|++++|.+++++..+.
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8888888888899999999999999999999999988764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-08 Score=109.97 Aligned_cols=422 Identities=9% Similarity=0.008 Sum_probs=279.0
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCC---HHHHHHHHhhcCC--
Q 005642 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGK---MNDARRVFDRTTD-- 199 (686)
Q Consensus 128 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~-- 199 (686)
++..+... +-|...|..++..+.+.+.++.+..+|+++.. .....|...+..-.+.++ ++.+..+|++...
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~ 133 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE 133 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS
T ss_pred HHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc
Confidence 34444444 45899999999999999999999999999885 345567788888888888 9999999998654
Q ss_pred ---CChhhHHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CcC-HHHHHHHHHHHHc---------cCChhhH
Q 005642 200 ---TSSVMWNSMISGYISNNED--------TEALLLFHKMRR-NGV-LED-ASTLASVLSACSS---------LGFLEHG 256 (686)
Q Consensus 200 ---~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~~---------~~~~~~a 256 (686)
+++..|...+.-..+.++. +...++|+..+. -|. .|+ ...|...+..... .++++.+
T Consensus 134 ~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~ 213 (679)
T 4e6h_A 134 LGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYI 213 (679)
T ss_dssp SCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHH
Confidence 6677888877766665543 234467777654 455 554 4566666655432 3356778
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhh-------C
Q 005642 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT-------M 329 (686)
Q Consensus 257 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~ 329 (686)
..+|+.++......-..+|......-...+ ...+.+++.+.. .+++.|...+.+ +
T Consensus 214 R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~~-----------------~~y~~Ar~~~~e~~~~~~~l 275 (679)
T 4e6h_A 214 RKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGELS-----------------AQYMNARSLYQDWLNITKGL 275 (679)
T ss_dssp HHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHHH-----------------HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHhh-----------------HHHHHHHHHHHHHHHHHHhH
Confidence 888888886432223344433322211111 111222222111 011112222211 1
Q ss_pred CC--------------C--C------chhHHHHHHHHHhCCC-------hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005642 330 PN--------------K--S------LISWNSMIVGLSQNGS-------PIEALDLFCNMNKLDLRMDKFSLASVISACA 380 (686)
Q Consensus 330 ~~--------------~--~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 380 (686)
.. | + ...|...+.---..+. .+.+..+|++.... .+-....|...+.-+.
T Consensus 276 ~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~ 354 (679)
T 4e6h_A 276 KRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQG 354 (679)
T ss_dssp CCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHH
T ss_pred hhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 10 0 1 1235444443333221 23355678888765 4556777888888888
Q ss_pred ccCChHHHH-HHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCC---------CCC------------
Q 005642 381 NISSLELGE-QVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGV---------KPT------------ 436 (686)
Q Consensus 381 ~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~---------~p~------------ 436 (686)
..|+.+.|. ++|+..+.. ++.+...|...+....+.|+ .|..+|+++.+... .|+
T Consensus 355 ~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 889999996 999999875 35667778888888888887 88888888875310 131
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC-C-CCCCHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG-CLNEAVNLIEQM-P-FEADVGMWSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~-~~p~~~~~~~li~ 513 (686)
...|...+....+.|+.+.|..+|..+.+... .+....|...+..-.+.| +++.|..+|+.. . .+.+...|...+.
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 24688888888889999999999999984311 123455554444444544 599999999987 2 3336777888888
Q ss_pred HHHhcCChhHHHHHHHHHHccCCC---CchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCC
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPE---NACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (686)
.....|+.+.|..+|++++...|+ ....|..++..-.+.|+.+.+.++.+++.+.-++
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 888999999999999999998773 4567888888888899999999999999986543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.3e-11 Score=117.47 Aligned_cols=249 Identities=14% Similarity=0.063 Sum_probs=148.1
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHc-------CCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHH
Q 005642 239 TLASVLSACSSLGFLEHGKQVHGHACKV-------GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311 (686)
Q Consensus 239 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 311 (686)
++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++.
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------- 95 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA------------- 95 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-------------
Confidence 3333444444444444444444444432 22334556777888888888888888888743
Q ss_pred HHHhCCCHHHHHHHHhhCCC----CCchhHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCC-CHHHHHHHHHHHH
Q 005642 312 VYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL------DLRM-DKFSLASVISACA 380 (686)
Q Consensus 312 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~ 380 (686)
.+++..... ....++..+...+...|++++|...|+++.+. +..| ....+..+...+.
T Consensus 96 -----------l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 164 (311)
T 3nf1_A 96 -----------LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ 164 (311)
T ss_dssp -----------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 333333211 12356777788888888888888888877654 2222 3455677888888
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 005642 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460 (686)
Q Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 460 (686)
..|++++|...++.+.+. +.+......+....++..+...+...|++++|.+++
T Consensus 165 ~~~~~~~A~~~~~~a~~~--------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 218 (311)
T 3nf1_A 165 NQGKYEEVEYYYQRALEI--------------------------YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY 218 (311)
T ss_dssp TTTCHHHHHHHHHHHHHH--------------------------HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH--------------------------HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999888876543 111100001112356778888899999999999999
Q ss_pred HHHHHhc------CCCCC-h------hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHH
Q 005642 461 DAMKWQY------HIDPE-I------EHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 461 ~~~~~~~------~~~p~-~------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~ 525 (686)
+++.+.. ...+. . ..+..+...+...+.+.+|...++... ..| ...++..+...+...|++++|.
T Consensus 219 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 298 (311)
T 3nf1_A 219 KEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAE 298 (311)
T ss_dssp HHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHH
Confidence 9887421 12221 1 222333334445556666666666663 334 4567889999999999999999
Q ss_pred HHHHHHHccCCC
Q 005642 526 KVAERMIELDPE 537 (686)
Q Consensus 526 ~~~~~~~~~~p~ 537 (686)
..+++++++.|+
T Consensus 299 ~~~~~al~l~~~ 310 (311)
T 3nf1_A 299 TLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhhc
Confidence 999999988774
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.4e-09 Score=106.14 Aligned_cols=268 Identities=12% Similarity=0.033 Sum_probs=164.6
Q ss_pred HccCChhhHHHHHHHHHHcCCCchH----HHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHH
Q 005642 248 SSLGFLEHGKQVHGHACKVGVIDDV----IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323 (686)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 323 (686)
...|+++.|...+++.+......+. ..+..+...+...|++++|...+++. .
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------------l 80 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT------------------------E 80 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------------H
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHH------------------------H
Confidence 3445555555555555443211111 13445556666677777777766632 2
Q ss_pred HHHhhCCCC--CchhHHHHHHHHHhCCChhhHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHccCChHHHHHHHHH
Q 005642 324 HIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNKL----DLR--MD-KFSLASVISACANISSLELGEQVFAR 394 (686)
Q Consensus 324 ~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 394 (686)
.+......+ ...++..+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (373)
T 1hz4_A 81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 160 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 222221111 0123455666777778888887777776542 221 22 23455667777888888888888887
Q ss_pred HHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChh
Q 005642 395 VTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474 (686)
Q Consensus 395 ~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 474 (686)
..+..... +......++..+...+...|++++|...+++............
T Consensus 161 al~~~~~~-----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 211 (373)
T 1hz4_A 161 GIEVLSSY-----------------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 211 (373)
T ss_dssp HHHHTTTS-----------------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHhhcc-----------------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcch
Confidence 76543211 1111234566777778888999999999988763312111111
Q ss_pred HHH-----HHHHHHHhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC------
Q 005642 475 HYS-----CMVDLFARAGCLNEAVNLIEQMP-FEAD-----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPE------ 537 (686)
Q Consensus 475 ~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------ 537 (686)
.+. ..+..+...|++++|...+++.. ..|. ...+..+...+...|++++|...++++.+..+.
T Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 291 (373)
T 1hz4_A 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 291 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhh
Confidence 111 23345778899999999998873 2221 234667778888999999999999988775332
Q ss_pred CchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 538 NACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
....+..++.++...|++++|...+++..+.
T Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 292 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1135677888899999999999998887754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-09 Score=105.10 Aligned_cols=212 Identities=10% Similarity=0.027 Sum_probs=129.8
Q ss_pred HHHHHHHhhCCC---CCchhHHHHHHHHHh-------CCCh-------hhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 005642 320 EDAKHIFRTMPN---KSLISWNSMIVGLSQ-------NGSP-------IEALDLFCNMNKLDLRM-DKFSLASVISACAN 381 (686)
Q Consensus 320 ~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 381 (686)
++|...|++... .++..|..++..+.. .|++ ++|..+|++..+. +.| +...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 455555555543 234455555555432 3554 5566666555542 123 23345555555555
Q ss_pred cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHhccCCHHHHHHH
Q 005642 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKP-TII-TFTAILSACDHCGLVKEGQKW 459 (686)
Q Consensus 382 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p-~~~-~~~~ll~~~~~~g~~~~A~~~ 459 (686)
.|++++|..+|+++++. .| +.. .|..++..+.+.|++++|..+
T Consensus 112 ~~~~~~A~~~~~~al~~-----------------------------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI-----------------------------------EDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp TTCHHHHHHHHHHHHTS-----------------------------------SSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc-----------------------------------cccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 55555555555555432 22 222 677777777777888888888
Q ss_pred HHHHHHhcCCCC-ChhHHHHHHHHHH-hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcc-
Q 005642 460 FDAMKWQYHIDP-EIEHYSCMVDLFA-RAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIEL- 534 (686)
Q Consensus 460 ~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 534 (686)
|++..+ ..| +...|...+.... ..|++++|..+|++. ...| +...|..++..+.+.|++++|..+++++++.
T Consensus 157 ~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 157 FKKARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHh---cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 888772 223 4455544433322 258888888888776 2223 5677777788888888888888888888874
Q ss_pred --CCC-CchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 535 --DPE-NACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 535 --~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
.|+ ....|..++..+.+.|++++|..+++++.+..+
T Consensus 234 ~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 443 556777778888888888888888887776543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.2e-10 Score=103.69 Aligned_cols=205 Identities=9% Similarity=0.020 Sum_probs=108.9
Q ss_pred CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 005642 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412 (686)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 412 (686)
|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...++..++.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3455556666666666666666666666655332455555556666666666666666666655543 123333333444
Q ss_pred HHHhchh--HHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHH
Q 005642 413 FYCKCGY--DALALFNEMRNTGVKPTI-------ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE---IEHYSCMV 480 (686)
Q Consensus 413 ~~~~~~~--~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~ 480 (686)
.|...|+ +|+..+++..+.... +. ..|..+...+...|++++|++.|++.. ...|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 4444433 444444444332211 23 345555566666677777777776665 23443 45555666
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 481 DLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
.+|...|+. .++++. ...+...+.... ....+.+++|+..+++++++.|+++.+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 666544432 122221 111233333222 23345567888888888888888777666665543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-09 Score=104.68 Aligned_cols=231 Identities=10% Similarity=0.005 Sum_probs=178.7
Q ss_pred hHHHHHHHHHHHHhc----CCh----hHHHHHHHhcc---cCCchhHHHHHHHHH-------hCCCH-------HHHHHH
Q 005642 271 DVIVASALLDTYSKR----GMP----SDACKLFSELK---VYDTILLNTMITVYS-------SCGRI-------EDAKHI 325 (686)
Q Consensus 271 ~~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~---~~~~~~~~~li~~~~-------~~g~~-------~~A~~~ 325 (686)
+...|...+..-.+. ++. ++|..+|++.. +.++..|..++..+. +.|++ ++|..+
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 445677777765554 233 67888898877 456778888888776 45886 899999
Q ss_pred HhhCCC---C-CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 005642 326 FRTMPN---K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK-F-SLASVISACANISSLELGEQVFARVTIIG 399 (686)
Q Consensus 326 ~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 399 (686)
|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. . .|..+...+.+.|++++|..+|+.+++..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 998765 3 4468999999999999999999999999984 5543 2 78888888889999999999998887643
Q ss_pred CCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHhcCCCC-ChhHHH
Q 005642 400 LDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSA-CDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYS 477 (686)
Q Consensus 400 ~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~ 477 (686)
. ++...|...... +...|++++|..+|++..+. .| +...|.
T Consensus 165 p----------------------------------~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~ 207 (308)
T 2ond_A 165 R----------------------------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVL 207 (308)
T ss_dssp T----------------------------------CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHH
T ss_pred C----------------------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHH
Confidence 1 122233333222 22369999999999998843 34 688899
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 478 CMVDLFARAGCLNEAVNLIEQMP----FEA--DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
.++..+.+.|++++|..+|++.. ..| ....|..++......|+.+.|..+++++++..|++..
T Consensus 208 ~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 99999999999999999999872 355 3667899999999999999999999999999997653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.1e-09 Score=105.59 Aligned_cols=203 Identities=9% Similarity=-0.030 Sum_probs=120.6
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHHCCC-----CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHH
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-----RM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (686)
.++..+...|...|++++|+..+++..+... .+ ...++..+..++...|++++|...+....+.
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~---------- 211 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL---------- 211 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----------
Confidence 3566666677777777777777666553210 11 1345566666777777777777777755432
Q ss_pred HHHHHHHhchhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CCCCChhHHHHHHHHHH
Q 005642 409 SLVDFYCKCGYDALALFNEMRNTGVKP-TIITFTAILSACDHCGLVKEGQKWFDAMKWQY---HIDPEIEHYSCMVDLFA 484 (686)
Q Consensus 409 ~li~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~~~~~~~l~~~~~ 484 (686)
.++. +..+ ...++..+...+...|++++|.+.+++..+.. +.+....++..++.++.
T Consensus 212 ----------------~~~~---~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 212 ----------------AMDI---QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp ----------------HHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred ----------------HHHc---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence 1110 1011 12456666677777777777777777765311 21223566777777777
Q ss_pred hcCChHHHHHHHHhCC------CCCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCC
Q 005642 485 RAGCLNEAVNLIEQMP------FEAD-VGMWSSILRGCVAHGD---KGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554 (686)
Q Consensus 485 ~~g~~~~A~~~~~~~~------~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 554 (686)
+.|++++|...+++.. ..|. ...+..+...+...++ +++|+..+++.. ..|.....+..++.+|...|+
T Consensus 273 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 273 KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCC
Confidence 7777777777777651 1222 2334444455556666 666666666522 233344566778888888888
Q ss_pred cchHHHHHHHHHh
Q 005642 555 WEKSSLIRDIMRE 567 (686)
Q Consensus 555 ~~~a~~~~~~~~~ 567 (686)
+++|..++++..+
T Consensus 352 ~~~A~~~~~~al~ 364 (378)
T 3q15_A 352 FEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-09 Score=110.28 Aligned_cols=236 Identities=10% Similarity=-0.018 Sum_probs=141.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-Cc----CHHHHHHHHHHHHccCChhhHHHHHHHHHHcC-----CCc-hHHHH
Q 005642 207 SMISGYISNNEDTEALLLFHKMRRNGV-LE----DASTLASVLSACSSLGFLEHGKQVHGHACKVG-----VID-DVIVA 275 (686)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~-~~~~~ 275 (686)
.....+...|++++|+..|++..+.-. .+ ...++..+...+...|+++.|...+.+..+.. ..+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677888888888887765310 12 23356666667777777777777777665531 011 23456
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC--CchhHHHHHHHHHhCCChhhH
Q 005642 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEA 353 (686)
Q Consensus 276 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 353 (686)
+.+..+|...|++++|...|++ |.++......+ ...++..+...|...|++++|
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~------------------------al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEA------------------------ALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHH------------------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 6677777777777777776663 33333333222 124677788888888888888
Q ss_pred HHHHHHHHHC----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHH
Q 005642 354 LDLFCNMNKL----DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMR 429 (686)
Q Consensus 354 ~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~ 429 (686)
+..|++..+. +.+....++..+...+.+.|++++|...+++..+.....+
T Consensus 242 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------- 295 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS-------------------------- 295 (378)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC--------------------------
T ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--------------------------
Confidence 8888887761 2222356777888888888898888888887766432111
Q ss_pred HCCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 430 NTGVKPTIITFTAILSACDHCGL---VKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 430 ~~~~~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
.+.....+..+...+...++ +++|+.++++. +..| ....+..+...|...|++++|...|++.
T Consensus 296 ---~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 296 ---HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp ---CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11112234444445555666 55566555542 1222 2344555666666666666666666543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.17 E-value=5.7e-10 Score=100.89 Aligned_cols=132 Identities=10% Similarity=0.021 Sum_probs=116.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILR 513 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~ 513 (686)
+..++..+...+...|++++|.++++++.+. .+.+...+..++..+...|++++|.+.++++. .+.+...+..+..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 118 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV 118 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Confidence 5677888888899999999999999998843 22367889999999999999999999999873 3346788889999
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.+...|++++|...++++++..|+++.++..++.++...|++++|.++++++.+..
T Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 119 ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999888754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=4.5e-08 Score=99.79 Aligned_cols=278 Identities=10% Similarity=-0.048 Sum_probs=182.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHH----HHHHHHHHHHccCChhhHHHHHHHHHHcCC---Cc--hHHHH
Q 005642 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS----TLASVLSACSSLGFLEHGKQVHGHACKVGV---ID--DVIVA 275 (686)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~ 275 (686)
+......+...|++++|...+++.....-..+.. ++..+...+...|+++.|...+++..+... .+ ...++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556677889999999998887753222222 445556677788999999988888766321 11 12345
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC----CchhHHHHHHHHHhCCChh
Q 005642 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK----SLISWNSMIVGLSQNGSPI 351 (686)
Q Consensus 276 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~ 351 (686)
..+...+...|++++|...+++ +.+.......+ ....+..+...+...|+++
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~------------------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEK------------------------AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 152 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH------------------------HHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH
Confidence 6677888889999999888873 33444443332 1235566777888889999
Q ss_pred hHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHH
Q 005642 352 EALDLFCNMNKLDLR--M--DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNE 427 (686)
Q Consensus 352 ~A~~~~~~m~~~g~~--p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~ 427 (686)
+|...+++....... + ...++..+...+...|++++|...++...+....+
T Consensus 153 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~------------------------- 207 (373)
T 1hz4_A 153 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG------------------------- 207 (373)
T ss_dssp HHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-------------------------
T ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-------------------------
Confidence 999988887754221 1 23456677778888999999999888776532111
Q ss_pred HHHCCCCCCHHHH--HHHHHHHhccCCHHHHHHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 005642 428 MRNTGVKPTIITF--TAILSACDHCGLVKEGQKWFDAMKWQYHIDP---EIEHYSCMVDLFARAGCLNEAVNLIEQMP-- 500 (686)
Q Consensus 428 m~~~~~~p~~~~~--~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 500 (686)
+..+..... ...+..+...|++++|...+++... ....+ ....+..+..++...|++++|...+++..
T Consensus 208 ----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 208 ----KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK-PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC-CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC-CCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 110000111 1233446688999999999988762 12111 12356778888899999999999888762
Q ss_pred -----CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 501 -----FEADV-GMWSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 501 -----~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
..++. ..+..+..++...|+.++|...++++++..+
T Consensus 283 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 283 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 11122 2566677788899999999999999888554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.5e-10 Score=117.17 Aligned_cols=176 Identities=13% Similarity=0.011 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhh
Q 005642 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF-NSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDR 196 (686)
Q Consensus 121 ~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 196 (686)
++.+.+.++..... .+.+...+..+...|...|++ ++|++.|++..+ | +...|..+...|.+.|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555544433 234566677777777777777 777777776653 2 233444444555555555555555544
Q ss_pred cCC--CChhhHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcc--------CChhhHH
Q 005642 197 TTD--TSSVMWNSMISGYISN---------NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL--------GFLEHGK 257 (686)
Q Consensus 197 ~~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------~~~~~a~ 257 (686)
..+ |+...|..+...+... |++++|++.|++..+.. +.+...+..+..++... |++++|.
T Consensus 163 al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 332 3334444444444444 44555555555444421 22334444444444444 4444455
Q ss_pred HHHHHHHHcCCC--chHHHHHHHHHHHHhcCChhHHHHHHHhc
Q 005642 258 QVHGHACKVGVI--DDVIVASALLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 258 ~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 298 (686)
..+++.++.... .+...+..+..+|...|++++|...|++.
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444443210 23444444444444444444444444443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-09 Score=101.36 Aligned_cols=153 Identities=10% Similarity=0.041 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005642 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSA 446 (686)
Q Consensus 367 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 446 (686)
.|+..+......+...|++++|...|..+++...++ +...+..+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---------------------------------~~~~~~~~~~~ 51 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ---------------------------------DSVTAYNCGVC 51 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC---------------------------------CHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---------------------------------CcHHHHHHHHH
Confidence 345677777788888889998888888877765323 44444445556
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHH
Q 005642 447 CDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DV-------GMWSSILRGCV 516 (686)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~li~~~~ 516 (686)
+...|++++|++.+++..+ ..| +...+..++.+|...|++++|...+++. ...| +. ..|..+...+.
T Consensus 52 ~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~ 128 (228)
T 4i17_A 52 ADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ 128 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH
Confidence 6666666666666666652 334 3555666666666666666666666655 2223 23 33555555666
Q ss_pred hcCChhHHHHHHHHHHccCCC--CchhHHHHHHHHhhcCCc
Q 005642 517 AHGDKGLGRKVAERMIELDPE--NACAYIQLSSIFATSGEW 555 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~ 555 (686)
..|++++|+..++++++.+|+ ++.++..++.+|...|+.
T Consensus 129 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 129 QAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666 566666666666655554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.09 E-value=9.9e-10 Score=106.95 Aligned_cols=235 Identities=12% Similarity=0.103 Sum_probs=156.8
Q ss_pred HhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC----chhHHHHHHHHHhCCChhhHHHHHH
Q 005642 283 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS----LISWNSMIVGLSQNGSPIEALDLFC 358 (686)
Q Consensus 283 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 358 (686)
...|++++|...|+ +|++++.+...++ ..++..+...+...|++++|+..|+
T Consensus 12 ~~~~~~~~A~~~~~------------------------~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 67 (283)
T 3edt_B 12 SGLVPRGSAVPLCK------------------------QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLN 67 (283)
T ss_dssp -CCSCSSSHHHHHH------------------------HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH------------------------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 45677888887776 4555555554332 3578888889999999999999998
Q ss_pred HHHHC------CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHC
Q 005642 359 NMNKL------DLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNT 431 (686)
Q Consensus 359 ~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~ 431 (686)
++.+. +-.| ...++..+...+...|++++|...+.++.+. +++....
T Consensus 68 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------------------~~~~~~~ 121 (283)
T 3edt_B 68 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI--------------------------REKVLGK 121 (283)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------------------------HHHHHCT
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------------------------HHHHcCC
Confidence 88754 2223 3457788888999999999999999876543 2222111
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-----
Q 005642 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY-----HIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP----- 500 (686)
Q Consensus 432 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----- 500 (686)
..+....++..+...+...|++++|.++++++.+.. .-.| ...++..+..+|.+.|++++|...+++..
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 111234677888888999999999999999887420 1133 36678889999999999999999988762
Q ss_pred -----CCCC-HHHHHHHHHHHHhcCC------hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 501 -----FEAD-VGMWSSILRGCVAHGD------KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 501 -----~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
..+. ...|..+.......+. +..+...++......|....++..++.+|...|++++|..++++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 2233333333333332 33333333333334455667889999999999999999999998765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=6.5e-09 Score=101.93 Aligned_cols=180 Identities=8% Similarity=-0.052 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHcc-CChHHHHHHHHHHHHhCCCcchhHHH
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDL---RM--DKFSLASVISACANI-SSLELGEQVFARVTIIGLDSDQIIST 408 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (686)
.+|+.+...|...|++++|+..|++..+... .+ -..++..+...+... |++++|...|++.++..
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--------- 148 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--------- 148 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH---------
Confidence 3556666666666677666666666554210 01 124566677777775 88888888887665421
Q ss_pred HHHHHHHhchhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCh-----hHHHHHHHH
Q 005642 409 SLVDFYCKCGYDALALFNEMRNTGVKP-TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI-----EHYSCMVDL 482 (686)
Q Consensus 409 ~li~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-----~~~~~l~~~ 482 (686)
.. .+..+ ...++..+...+.+.|++++|+..|++..+...-.+.. ..+..++.+
T Consensus 149 -----------------~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 208 (292)
T 1qqe_A 149 -----------------AQ---DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (292)
T ss_dssp -----------------HH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred -----------------Hh---CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence 11 11000 13467788889999999999999999988421111121 257778888
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCChhHHHHHHHHHHccCCCCchhHH
Q 005642 483 FARAGCLNEAVNLIEQM-PFEADVG------MWSSILRGCV--AHGDKGLGRKVAERMIELDPENACAYI 543 (686)
Q Consensus 483 ~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~li~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~ 543 (686)
+...|++++|...|++. .+.|+.. .+..++..+. ..+++++|+..++++..++|.....+.
T Consensus 209 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 209 QLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 99999999999999987 3455422 2344555554 346688888888888877775544333
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.1e-10 Score=122.79 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=131.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSIL 512 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li 512 (686)
+..+++.+...+.+.|++++|++.|++..+ +.| +...+..+..+|.+.|++++|++.|++. ...| +...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 457899999999999999999999999983 457 5889999999999999999999999987 4566 478899999
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCccceeeccccceeehhh
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDTM 592 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (686)
.++...|++++|++.++++++++|+++.+|..++.+|.+.|++++|++.+++..+. .|.........+.++...+.
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l----~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL----KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHhhhhhHHHhccc
Confidence 99999999999999999999999999999999999999999999999999988874 34444333333344444444
Q ss_pred hhhhhcH
Q 005642 593 FLQLANF 599 (686)
Q Consensus 593 ~~~~~~~ 599 (686)
|.++...
T Consensus 161 ~~~A~~~ 167 (723)
T 4gyw_A 161 WTDYDER 167 (723)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 4444433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-08 Score=90.63 Aligned_cols=92 Identities=8% Similarity=-0.023 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 282 (686)
..+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 120 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVAL 120 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHH
Confidence 34444444455555555555555554443 12233444444444444455555555555444442 22334444444444
Q ss_pred HhcCChhHHHHHHH
Q 005642 283 SKRGMPSDACKLFS 296 (686)
Q Consensus 283 ~~~g~~~~A~~~~~ 296 (686)
...|++++|...++
T Consensus 121 ~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 121 DNLGRFDEAIDSFK 134 (186)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 45555555544444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.01 E-value=4.2e-08 Score=94.21 Aligned_cols=178 Identities=8% Similarity=-0.023 Sum_probs=118.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCC
Q 005642 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTG 432 (686)
Q Consensus 353 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~ 432 (686)
|+..|++....+ .++..++..+..++...|++++|++++...+..+..
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~------------------------------- 132 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA------------------------------- 132 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-------------------------------
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-------------------------------
Confidence 667777766554 455556667777777888888887777765543310
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhCC-CC
Q 005642 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-----EIEHYSCMVDL--FARAG--CLNEAVNLIEQMP-FE 502 (686)
Q Consensus 433 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~ 502 (686)
.-+...+..++..+.+.|+.+.|.+.+++|.+ ..| +..+...+..+ ....| ++.+|..+|+++. ..
T Consensus 133 -~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 133 -EGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp -TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred -cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 01445666677778888888888888888873 345 24444445444 33333 7888888888873 34
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc----------CCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIEL----------DPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 503 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
|+..+-..++.++...|++++|+..++.+.+. +|+++.++..++.+....|+ +|.++++++++.
T Consensus 209 p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 209 PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 55333333444777888888888888877765 47787877777777777776 778888887763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-08 Score=97.53 Aligned_cols=237 Identities=12% Similarity=0.014 Sum_probs=151.3
Q ss_pred ccCChhhHHHHHHHHHHc-------CCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHH
Q 005642 249 SLGFLEHGKQVHGHACKV-------GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321 (686)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 321 (686)
..|++++|...+++.++. ..+....++..+...|...|++++|...++++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------------------- 69 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDA----------------------- 69 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHH-----------------------
Confidence 345555555555555442 22334567788888888889998888888743
Q ss_pred HHHHHhhCCCC----CchhHHHHHHHHHhCCChhhHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHccCChHHHHH
Q 005642 322 AKHIFRTMPNK----SLISWNSMIVGLSQNGSPIEALDLFCNMNKL------DL-RMDKFSLASVISACANISSLELGEQ 390 (686)
Q Consensus 322 A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~t~~~ll~~~~~~~~~~~a~~ 390 (686)
.++.++...+ ...++..+...|...|++++|...|++..+. .. +....++..+...+...|++++|..
T Consensus 70 -l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 70 -LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148 (283)
T ss_dssp -HHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred -HHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3333333111 2356778888888889998888888887654 11 2235677788888999999999999
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---
Q 005642 391 VFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY--- 467 (686)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--- 467 (686)
.++++.+. +........+....++..+...+...|++++|.++++++.+..
T Consensus 149 ~~~~al~~--------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 149 YYRRALEI--------------------------YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp HHHHHHHH--------------------------HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------------------HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 99876643 1111100111134578888889999999999999999987421
Q ss_pred ---CCCC-ChhHHHHHHHHHHhcCC------hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 005642 468 ---HIDP-EIEHYSCMVDLFARAGC------LNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535 (686)
Q Consensus 468 ---~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 535 (686)
...+ ....+..+...+...+. +.++...++... ..| ....+..+...+...|++++|...++++++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1233 33445555554444333 444444455443 223 35568889999999999999999999998753
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-08 Score=86.61 Aligned_cols=129 Identities=15% Similarity=0.212 Sum_probs=112.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 005642 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCV 516 (686)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~ 516 (686)
.+..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|...++++. .+.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4667788888999999999999998843 22367888899999999999999999999873 3345778888999999
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
..|++++|...++++++..|++...+..++.++...|++++|...++++.+..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999887643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-09 Score=93.35 Aligned_cols=123 Identities=9% Similarity=-0.026 Sum_probs=99.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005642 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHG 519 (686)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g 519 (686)
|...+...|++++|++.++... ...| +...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445667788999999888876 3445 4566778889999999999999999887 4555 5788999999999999
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHH-HHHHHhc
Q 005642 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI-RDIMREK 568 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~ 568 (686)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 5766653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.2e-08 Score=96.96 Aligned_cols=151 Identities=7% Similarity=-0.034 Sum_probs=69.8
Q ss_pred HHHHHhcCChHHHHHHHhccCC-----CC----hhhHHHHHHHHHccCCHHHHHHHHhhcCC-----CC----hhhHHHH
Q 005642 147 VNLYGKCGDFNSANQVLNMMKE-----PD----DFCLSALISGYANCGKMNDARRVFDRTTD-----TS----SVMWNSM 208 (686)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l 208 (686)
...|...|++++|...|++..+ .+ ..+|+.+...|.+.|++++|+..|++..+ .+ ..+|+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456667777777777765542 11 23445555555555555555555544322 01 2244445
Q ss_pred HHHHHhc-CChhHHHHHHHHHHHCCCCcC-------HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchH------HH
Q 005642 209 ISGYISN-NEDTEALLLFHKMRRNGVLED-------ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV------IV 274 (686)
Q Consensus 209 i~~~~~~-g~~~~A~~~~~~m~~~g~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~ 274 (686)
...|... |++++|+..|++.++. .|+ ..++..+...+...|++++|...+++..+....... ..
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 5555553 5555555555554431 110 123444444444455555555555544443221110 12
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 275 ASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 275 ~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
+..+..++...|++++|...|++..
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.2e-08 Score=92.70 Aligned_cols=174 Identities=12% Similarity=0.004 Sum_probs=114.5
Q ss_pred CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHH
Q 005642 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD---KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408 (686)
Q Consensus 332 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (686)
.++..+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|...|+.+++......
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~----- 86 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP----- 86 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc-----
Confidence 455667777888888899999999999888752 112 46677788888889999999888888877642110
Q ss_pred HHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--------cCCHHHHHHHHHHHHHhcCCCC-ChhHH---
Q 005642 409 SLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDH--------CGLVKEGQKWFDAMKWQYHIDP-EIEHY--- 476 (686)
Q Consensus 409 ~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~p-~~~~~--- 476 (686)
.....+..+..++.. .|++++|+..|+++.+. .| +....
T Consensus 87 --------------------------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~ 137 (261)
T 3qky_A 87 --------------------------RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDAT 137 (261)
T ss_dssp --------------------------THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHH
T ss_pred --------------------------hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHH
Confidence 012334444444444 67777777777776633 23 22222
Q ss_pred --------------HHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChhHHHHH
Q 005642 477 --------------SCMVDLFARAGCLNEAVNLIEQM-PFEAD----VGMWSSILRGCVAH----------GDKGLGRKV 527 (686)
Q Consensus 477 --------------~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~li~~~~~~----------g~~~~A~~~ 527 (686)
..++..|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|+..
T Consensus 138 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~ 217 (261)
T 3qky_A 138 QKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVEL 217 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHH
Confidence 45667777778888887777776 22232 34566666666654 777888888
Q ss_pred HHHHHccCCCCch
Q 005642 528 AERMIELDPENAC 540 (686)
Q Consensus 528 ~~~~~~~~p~~~~ 540 (686)
++++++..|+++.
T Consensus 218 ~~~~~~~~p~~~~ 230 (261)
T 3qky_A 218 YERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHCTTCTH
T ss_pred HHHHHHHCCCChH
Confidence 8888887787643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.8e-09 Score=91.87 Aligned_cols=115 Identities=12% Similarity=0.049 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
...+..+...|.+.|++++|++.|++..+ +.| +...|..++.+|.+.|++++|...|++. ...| +...|..+..
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 107 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAE 107 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34566788899999999999999999983 456 6899999999999999999999999987 4566 5788999999
Q ss_pred HHHhcCChhHHHHH-HHHHHccCCCCchhHHHHHHHHhhcCC
Q 005642 514 GCVAHGDKGLGRKV-AERMIELDPENACAYIQLSSIFATSGE 554 (686)
Q Consensus 514 ~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 554 (686)
.+.+.|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 108 ~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 108 LLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999876654 699999999999999999999988875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.4e-07 Score=84.77 Aligned_cols=174 Identities=7% Similarity=-0.041 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHC
Q 005642 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNT 431 (686)
Q Consensus 352 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~ 431 (686)
+|+..|++..+.| +...+..+...+...+++++|...|++..+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-------------------------------- 48 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-------------------------------- 48 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------------------------------
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------------------------------
Confidence 4666677766653 55566666666667777777777777665544
Q ss_pred CCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCC-CC
Q 005642 432 GVKPTIITFTAILSACDHCG----LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR----AGCLNEAVNLIEQMP-FE 502 (686)
Q Consensus 432 ~~~p~~~~~~~ll~~~~~~g----~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~ 502 (686)
++..+..|...|.. + ++++|.++|++..+ . -++..+..|..+|.. .+++++|++.|++.. ..
T Consensus 49 ----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 119 (212)
T 3rjv_A 49 ----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS 119 (212)
T ss_dssp ----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST
T ss_pred ----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC
Confidence 55666667667766 6 89999999998873 2 267778888888887 889999999999874 44
Q ss_pred CC---HHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc-C-----CcchHHHHHHHHHhcC
Q 005642 503 AD---VGMWSSILRGCVA----HGDKGLGRKVAERMIELDPENACAYIQLSSIFATS-G-----EWEKSSLIRDIMREKH 569 (686)
Q Consensus 503 p~---~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 569 (686)
|. +..+..|...|.. .++.++|+..++++.+. |.++.++..|+.+|... | ++++|..++++..+.|
T Consensus 120 ~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 120 ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 43 7788888888888 78999999999999987 66777899999999764 3 8999999999988876
Q ss_pred C
Q 005642 570 V 570 (686)
Q Consensus 570 ~ 570 (686)
.
T Consensus 199 ~ 199 (212)
T 3rjv_A 199 F 199 (212)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.85 E-value=4e-07 Score=85.17 Aligned_cols=204 Identities=11% Similarity=-0.035 Sum_probs=127.1
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcch--hHHHHH
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR-MD-KFSLASVISACANISSLELGEQVFARVTIIGLDSDQ--IISTSL 410 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 410 (686)
..+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++.+.|++++|...|+.+++....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34555667777788888888888888764221 11 245667777788888888888888887776433211 123333
Q ss_pred HHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCCh
Q 005642 411 VDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCL 489 (686)
Q Consensus 411 i~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 489 (686)
...|.+.+..++ ..|..+...+...|+.++|...|+++.+ ..|+ ............-.+..
T Consensus 85 g~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 85 GLTNMALDDSAL---------------QGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHHC-----------------------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhh---------------hhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHHHHHHHH
Confidence 333332221111 1122333445567899999999999883 3453 33332221111100000
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc---hhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA---CAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 490 ~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+.
T Consensus 147 ---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 147 ---------------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp ---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 11123466778899999999999999999999875 568899999999999999999999888
Q ss_pred hcCCC
Q 005642 567 EKHVG 571 (686)
Q Consensus 567 ~~~~~ 571 (686)
..++.
T Consensus 212 ~~~~~ 216 (225)
T 2yhc_A 212 ANSSN 216 (225)
T ss_dssp HCCSC
T ss_pred hhCCC
Confidence 76544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-08 Score=111.25 Aligned_cols=171 Identities=11% Similarity=0.001 Sum_probs=137.8
Q ss_pred HhCCChhhHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 005642 345 SQNGSPIEALDLFCNMN--------KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416 (686)
Q Consensus 345 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 416 (686)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...++.+++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------- 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV----------------- 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----------------
Confidence 67889999999999887 32 23345667777888888889988888888776643
Q ss_pred chhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHH
Q 005642 417 CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNL 495 (686)
Q Consensus 417 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 495 (686)
+-+...|..+..++...|++++|.+.|++..+ +.| +...+..+..++.+.|++++ .+.
T Consensus 464 -----------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~ 522 (681)
T 2pzi_A 464 -----------------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKF 522 (681)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCH
T ss_pred -----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHH
Confidence 22667788888889999999999999999883 346 67888999999999999999 999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCC
Q 005642 496 IEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554 (686)
Q Consensus 496 ~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 554 (686)
|++. ...| +...|..+..++...|++++|+..++++++++|++..++..++.++...|+
T Consensus 523 ~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 523 YQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9887 3455 577889999999999999999999999999999999999999999877666
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-08 Score=87.75 Aligned_cols=102 Identities=8% Similarity=0.000 Sum_probs=91.6
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 005642 468 HIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544 (686)
Q Consensus 468 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 544 (686)
.+.| +...+..+...+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 5666 5778888999999999999999999988 3455 68889999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 545 LSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 545 l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
++.+|...|++++|...+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999888754
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.81 E-value=7.3e-07 Score=85.64 Aligned_cols=185 Identities=10% Similarity=0.047 Sum_probs=118.6
Q ss_pred HHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 322 AKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR-MDKFSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 322 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
|...|++... ++..++..+..++...|++++|++++.+....|.. -+...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444432 34455566777788888888888888887665432 2445666777788888888888888887765
Q ss_pred hCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHH--Hh--ccCCHHHHHHHHHHHHHhcCCCCCh
Q 005642 398 IGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSA--CD--HCGLVKEGQKWFDAMKWQYHIDPEI 473 (686)
Q Consensus 398 ~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~--~~g~~~~A~~~~~~~~~~~~~~p~~ 473 (686)
.. |+.. ..+..+...++.+ .. ..+++.+|..+|+++.+ ..|+.
T Consensus 165 ~~--~d~~----------------------------~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~ 211 (310)
T 3mv2_B 165 AI--EDTV----------------------------SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTW 211 (310)
T ss_dssp HS--CHHH----------------------------HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSH
T ss_pred cC--cccc----------------------------ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCc
Confidence 42 2000 0012333333333 22 23478888888888762 33543
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-C----------CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 005642 474 EHYSCMVDLFARAGCLNEAVNLIEQMP-F----------EA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 541 (686)
.+...+..++.+.|++++|.+.++.+. . .| ++.++..+|......|+ +|.+++.++.+..|+++.+
T Consensus 212 ~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 212 KTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 333344447888899999988887652 1 24 46666677777677776 7889999999999988763
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.1e-08 Score=92.00 Aligned_cols=171 Identities=8% Similarity=-0.040 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSAC 447 (686)
Q Consensus 368 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 447 (686)
+...+......+.+.|++++|...|+.+++..... +.....+..+..++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-------------------------------~~~~~a~~~lg~~~ 62 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-------------------------------EWAADAQFYLARAY 62 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-------------------------------TTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------------------------------cchHHHHHHHHHHH
Confidence 44556666677778888888888887776543110 00156777888899
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHh--------cCChHHHHHHHHhCC-CCCC-HHHH--------
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFAR--------AGCLNEAVNLIEQMP-FEAD-VGMW-------- 508 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~-~~p~-~~~~-------- 508 (686)
.+.|++++|...|++..+...-.|. ...+..++.++.. .|++++|...|+++. ..|+ ...+
T Consensus 63 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~ 142 (261)
T 3qky_A 63 YQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRE 142 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHH
Confidence 9999999999999999854332332 5678888999998 999999999999872 3343 2222
Q ss_pred ---------HHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHHHHhhc----------CCcchHHHHHHHHH
Q 005642 509 ---------SSILRGCVAHGDKGLGRKVAERMIELDPEN---ACAYIQLSSIFATS----------GEWEKSSLIRDIMR 566 (686)
Q Consensus 509 ---------~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~ 566 (686)
..+...+...|++++|+..++++++..|++ +.++..++.+|... |++++|...++++.
T Consensus 143 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 143 LRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 556788999999999999999999999984 45788899999876 89999999999988
Q ss_pred hcC
Q 005642 567 EKH 569 (686)
Q Consensus 567 ~~~ 569 (686)
+..
T Consensus 223 ~~~ 225 (261)
T 3qky_A 223 QIF 225 (261)
T ss_dssp HHC
T ss_pred HHC
Confidence 754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-07 Score=86.56 Aligned_cols=160 Identities=8% Similarity=0.008 Sum_probs=102.2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHHccCChHHHHHHHHHHHHhCCC
Q 005642 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDK-FSLAS----------------VISACANISSLELGEQVFARVTIIGLD 401 (686)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~ 401 (686)
.....+...|++++|+..|++..+. .|+. ..+.. +..++.+.|++++|...|+..++..
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-- 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--
Confidence 3344555666666666666666553 2322 22222 5555566666666666666555432
Q ss_pred cchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHH
Q 005642 402 SDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMV 480 (686)
Q Consensus 402 ~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 480 (686)
+-+...+..+...+...|++++|.+.|++..+ +.| +...+..++
T Consensus 85 --------------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg 129 (208)
T 3urz_A 85 --------------------------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLG 129 (208)
T ss_dssp --------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred --------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHH
Confidence 12567788888888888999999999998873 456 577888888
Q ss_pred HHHHhcCC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 481 DLFARAGC--LNEAVNLIEQMPFEADV--GMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 481 ~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
.+|...|. .+.+...++... .|+. ..+.....++...|++++|+..+++++++.|++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 130 NYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 88766554 445566666653 3333 334445556677888999999999999988853
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-07 Score=91.55 Aligned_cols=162 Identities=6% Similarity=-0.060 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSAC 447 (686)
Q Consensus 368 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 447 (686)
+...+..+...+...|++++|...|+.+.+.. +-+...+..+...+
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------------------------P~~~~a~~~la~~~ 161 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS----------------------------------NQNGEIGLLLAETL 161 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----------------------------------TSCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC----------------------------------CcchhHHHHHHHHH
Confidence 34455566666677777777777777666543 12566777888888
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYS-CMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLG 524 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A 524 (686)
...|++++|...++++.. ..|+..... .....+...++.++|...+++. ...| +...+..+...+...|++++|
T Consensus 162 ~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A 238 (287)
T 3qou_A 162 IALNRSEDAEAVLXTIPL---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEA 238 (287)
T ss_dssp HHTTCHHHHHHHHTTSCG---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHhCch---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence 888999999998888762 345543322 2333366677788888888776 3344 577788888888899999999
Q ss_pred HHHHHHHHccCCCC--chhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 525 RKVAERMIELDPEN--ACAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 525 ~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
+..++++++.+|++ ..++..++.++...|+.++|...+++..
T Consensus 239 ~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 239 LELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999988887 7788889999999999998888877654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.8e-07 Score=88.62 Aligned_cols=119 Identities=8% Similarity=-0.002 Sum_probs=69.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--C--ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----HH
Q 005642 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHID--P--EIEHYSCMVDLFARAGCLNEAVNLIEQMP-F---EAD----VG 506 (686)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~ 506 (686)
++..+...|.. |++++|++.|++..+...-. + ...++..+..+|.+.|++++|+..|++.. . .++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 44455555555 66666666666654211100 0 13456666777777777777777776651 1 111 22
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh-----HHHHHHHHhhcCCcchHHH
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACA-----YIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 560 (686)
.+..++..+...|++++|...+++++ ..|+.... ...++.++ ..|+.+.+.+
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 45566667777788888888888888 88865432 33344444 4566554444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.74 E-value=5.4e-06 Score=87.09 Aligned_cols=200 Identities=9% Similarity=-0.062 Sum_probs=116.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHC-
Q 005642 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNT- 431 (686)
Q Consensus 353 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~- 431 (686)
+..+|+++... .+.+...|...+.-+.+.|+.+.|..+++..+.. +.+...+...... ...++ . ++.+.+.
T Consensus 198 v~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~-~---~~~l~~~~ 269 (493)
T 2uy1_A 198 MHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEA-V---YGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTH-H---HHHHHHHT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhH-H---HHHHHHHH
Confidence 44556665553 2334455555555555666666666666666655 3232222211111 01111 1 1111110
Q ss_pred --------CC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC
Q 005642 432 --------GV---KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG-CLNEAVNLIEQM 499 (686)
Q Consensus 432 --------~~---~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 499 (686)
+. ......|...+....+.++.+.|..+|+.+ +..+ .+...|...+..-.+.+ +.+.|..+|+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 00 111245667777777778899999999987 2221 24455544333333333 689999999876
Q ss_pred C--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 500 P--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 500 ~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
- ...++..|...++.....|+.+.|..+++++ +.....|...+..-...|+.+.+..++++..+
T Consensus 347 l~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 2223555677777778889999999999887 33556677777777778999999887777764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.3e-08 Score=81.12 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=65.6
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 005642 469 IDPE-IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545 (686)
Q Consensus 469 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 545 (686)
+.|+ ...+...+..|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4452 455666666666677777777766665 2333 456666666677777777777777777777777777777777
Q ss_pred HHHHhhcCCcchHHHHHHHHHh
Q 005642 546 SSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777776655
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.72 E-value=9.3e-08 Score=80.06 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=98.3
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 005642 433 VKPTI-ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMW 508 (686)
Q Consensus 433 ~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 508 (686)
+.|+. ..+......+.+.|++++|++.|++..+ +.| +...|..+..+|.+.|++++|+..|++. ...| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34443 5677888899999999999999999883 345 7899999999999999999999999987 3445 57889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 005642 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 548 (686)
..+..++...|++++|+..++++++++|++..++..+..+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999888877764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=7.2e-08 Score=94.10 Aligned_cols=134 Identities=8% Similarity=-0.008 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 005642 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEADVGMWSSI 511 (686)
Q Consensus 434 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 511 (686)
+.+...+..+...+...|++++|...|++..+ ..| +...+..+..++.+.|++++|...++++. ..|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 33556777888889999999999999999983 356 68899999999999999999999999984 56765544333
Q ss_pred HH-HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 512 LR-GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 512 i~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
.. .+...++.+.|...++++++.+|+++..+..++.+|...|++++|...++++.+..+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 33 366788899999999999999999999999999999999999999999999987543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.9e-07 Score=84.09 Aligned_cols=158 Identities=9% Similarity=-0.022 Sum_probs=93.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcC-HHHHHH----------------HHHHHHccCChhhHHHHHHHHHHcCCCc
Q 005642 208 MISGYISNNEDTEALLLFHKMRRNGVLED-ASTLAS----------------VLSACSSLGFLEHGKQVHGHACKVGVID 270 (686)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 270 (686)
....+...|++++|+..|++..+. .|+ ...+.. +..++.+.|++++|...+++.++.. +.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 344455566666666666666552 332 223333 5666667777777777777777654 33
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCC--HHHHHHHHhhCCCCCch--hHHHHHHH
Q 005642 271 DVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGR--IEDAKHIFRTMPNKSLI--SWNSMIVG 343 (686)
Q Consensus 271 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~li~~ 343 (686)
+...+..+..+|...|++++|...|++.. +.+..++..+..+|...|+ .+.+...+.....+++. .+.....+
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLS 166 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 55666667777777777777777777665 3345566666666554432 34455666666655543 33444555
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHH
Q 005642 344 LSQNGSPIEALDLFCNMNKLDLRMDKF 370 (686)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 370 (686)
+...|++++|+..|++..+ ..|+..
T Consensus 167 ~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 6667777888888877776 355543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-07 Score=100.80 Aligned_cols=156 Identities=6% Similarity=-0.137 Sum_probs=59.4
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 005642 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460 (686)
Q Consensus 383 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 460 (686)
|++++|.+.++++.+.. +.+...+..+...|.+.|+ +|.+.+++..+.... +...+..+...+...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56677777777665542 2223344444444444443 444444444433211 2344444444444444444444444
Q ss_pred HHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHHcc
Q 005642 461 DAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAH---GDKGLGRKVAERMIEL 534 (686)
Q Consensus 461 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~ 534 (686)
++..+ ..| +...+..+..+|.+.|++++|.+.|++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 81 ~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 44442 122 3344444444444444444444444443 1222 233444444444444 4444444444444444
Q ss_pred CCCCchhHH
Q 005642 535 DPENACAYI 543 (686)
Q Consensus 535 ~p~~~~~~~ 543 (686)
+|++...+.
T Consensus 158 ~p~~~~~~~ 166 (568)
T 2vsy_A 158 GVGAVEPFA 166 (568)
T ss_dssp TCCCSCHHH
T ss_pred CCcccChHH
Confidence 444444333
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=3e-07 Score=85.14 Aligned_cols=127 Identities=12% Similarity=0.013 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGC 515 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~ 515 (686)
..+..+...+...|++++|.+.|++.. .|+...+..++.+|.+.|++++|...|++. ...| +...|..+...+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 345566778889999999999998763 568899999999999999999999999987 3334 678899999999
Q ss_pred HhcCChhHHHHHHHHHHccCCCCc----------------hhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 516 VAHGDKGLGRKVAERMIELDPENA----------------CAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
...|++++|+..++++++..|++. .++..++.+|...|++++|.+.+++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999999888877 889999999999999999999999888654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.69 E-value=4.1e-07 Score=76.68 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 283 (686)
+|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...++.+.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555556666666666666666655532 2344455555555556666666666666655543 223445555555566
Q ss_pred hcCChhHHHHHHHhc
Q 005642 284 KRGMPSDACKLFSEL 298 (686)
Q Consensus 284 ~~g~~~~A~~~~~~~ 298 (686)
..|++++|...++++
T Consensus 81 ~~~~~~~A~~~~~~~ 95 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKA 95 (136)
T ss_dssp TTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHH
Confidence 666666665555543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.69 E-value=6.3e-06 Score=86.62 Aligned_cols=353 Identities=10% Similarity=0.034 Sum_probs=215.1
Q ss_pred hcC-ChHHHHHHHhccCC--CChhhHHHHHHHHHccCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCC-hhHHHHHH
Q 005642 152 KCG-DFNSANQVLNMMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNE-DTEALLLF 225 (686)
Q Consensus 152 ~~g-~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~ 225 (686)
+.| +++.|+.+|+.+.+ |. |+++.+..+|++... |++..|...+.-..+.+. .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 346 37788888877653 33 899999999998776 788899988887777663 45677788
Q ss_pred HHHHHC-CCC-cCHHHHHHHHHHHHc----cCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc-------------C
Q 005642 226 HKMRRN-GVL-EDASTLASVLSACSS----LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR-------------G 286 (686)
Q Consensus 226 ~~m~~~-g~~-p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-------------g 286 (686)
+..+.. |.. ++...|...+..+.. .++.+.+..+|+.+++.....-...|......-... +
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~ 151 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLP 151 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhH
Confidence 887764 433 366677777766542 467888999999999853322233444333321111 1
Q ss_pred ChhHHHHHHHhccc----CCchhHHHHHHHHHhCC--C-----HHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhh
Q 005642 287 MPSDACKLFSELKV----YDTILLNTMITVYSSCG--R-----IEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIE 352 (686)
Q Consensus 287 ~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 352 (686)
.+..|..+++++.. .+...|...+.--...+ - .+.+..+|+++.. .++..|...+.-+.+.|+.++
T Consensus 152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 12233333433331 13335555444432221 1 2345667776654 345678888888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC---------C---CcchhHHHHHHHHHHhchh-
Q 005642 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG---------L---DSDQIISTSLVDFYCKCGY- 419 (686)
Q Consensus 353 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~li~~~~~~~~- 419 (686)
|..+|++.... |....+... +......++ +++.+.+.- . .....+|...+....+.+.
T Consensus 232 ar~i~erAi~~---P~~~~l~~~---y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~ 302 (493)
T 2uy1_A 232 AKKVVERGIEM---SDGMFLSLY---YGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493)
T ss_dssp HHHHHHHHHHH---CCSSHHHHH---HHHHTTCTH---HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhC---CCcHHHHHH---HHhhcchhH---HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence 99999999887 544433222 222111111 133332211 0 1112445555665555444
Q ss_pred -HHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 005642 420 -DALALFNEMRNTGVKPTIITFTAILSACD-HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497 (686)
Q Consensus 420 -~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (686)
.|..+|++. .. ...+...|...+..-. ..++.+.|..+|+...+..+ -++..+...++...+.|+.+.|..+|+
T Consensus 303 ~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 303 ELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 788899988 32 2234444443222212 23468999999999885432 245566777888888999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 498 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
++. .....|...+.--...|+.+.+..+++++.+
T Consensus 379 r~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 379 RLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 983 3577788888888888999999888888876
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.9e-07 Score=101.53 Aligned_cols=164 Identities=10% Similarity=-0.063 Sum_probs=82.7
Q ss_pred HccCCHHHHHHHHhhcC-----------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcc
Q 005642 182 ANCGKMNDARRVFDRTT-----------DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250 (686)
Q Consensus 182 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 250 (686)
...|++++|++.|++.. ..+...|..+...+.+.|++++|++.|++..+.+ +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 44455555555554443 1234455555555555555555555555555431 22344555555555555
Q ss_pred CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHh
Q 005642 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFR 327 (686)
Q Consensus 251 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 327 (686)
|++++|...|+++++.. +.+...+..+..+|.+.|++++ ...|++.. +.+...|..+..++.+.|++++|.+.|+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555555543 2234445555555555555555 55555544 2234455555555555566666666655
Q ss_pred hCCCCCc---hhHHHHHHHHHhCC
Q 005642 328 TMPNKSL---ISWNSMIVGLSQNG 348 (686)
Q Consensus 328 ~~~~~~~---~~~~~li~~~~~~g 348 (686)
+..+.++ ..|..+..++...+
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC---
T ss_pred hhcccCcccHHHHHHHHHHHHccC
Confidence 5554322 34444444444433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-07 Score=83.89 Aligned_cols=129 Identities=7% Similarity=-0.047 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL-FARAGCLNEAVNLIEQM-PFEA-DVGMWSSIL 512 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li 512 (686)
+...+..+...+...|++++|...+++... ..|+...+..+... +...+...+|...+++. ...| +...+..+.
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la 115 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELA 115 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence 556677777778888888888888887662 22333333222222 12222333466666665 3445 467777788
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCC--chhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPEN--ACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
..+...|++++|+..++++++.+|+. +..+..++.++...|+.++|...+++...
T Consensus 116 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 116 VQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 88888888888888888888888764 44788888888888888888888776543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-06 Score=80.90 Aligned_cols=158 Identities=10% Similarity=-0.015 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC----ChhHHHHHHHhcccC-CchhHHHHHHH
Q 005642 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG----MPSDACKLFSELKVY-DTILLNTMITV 312 (686)
Q Consensus 238 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~-~~~~~~~li~~ 312 (686)
.++..+...+...+++++|...|++..+.| +...+..|..+|.. + ++++|...|++...+ ++.++..|...
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~ 94 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARV 94 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 333334444444444444444444444433 23333334444443 3 444444444444322 33344444444
Q ss_pred HHh----CCCHHHHHHHHhhCCCCC-----chhHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 313 YSS----CGRIEDAKHIFRTMPNKS-----LISWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379 (686)
Q Consensus 313 ~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 379 (686)
|.. .+++++|...|++..+.+ +.++..+...|.. .+++++|+..|++..+. ..+...+..+...+
T Consensus 95 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 95 LVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMF 172 (212)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 444 455555555555555432 4667777777776 67778888888887765 23334555555555
Q ss_pred Hcc-C-----ChHHHHHHHHHHHHhCCC
Q 005642 380 ANI-S-----SLELGEQVFARVTIIGLD 401 (686)
Q Consensus 380 ~~~-~-----~~~~a~~~~~~~~~~~~~ 401 (686)
... | ++++|...|+...+.|.+
T Consensus 173 ~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 173 QQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 432 2 778888888877777643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=5.2e-08 Score=84.30 Aligned_cols=102 Identities=12% Similarity=0.078 Sum_probs=89.6
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 005642 468 HIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544 (686)
Q Consensus 468 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 544 (686)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4556 5677888889999999999999999987 3444 67888899999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 545 LSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 545 l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
++.+|...|++++|.+.+++..+..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999888754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.65 E-value=8.2e-07 Score=79.37 Aligned_cols=155 Identities=10% Similarity=0.032 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCC--CChhhHHHHHHH-HHhc
Q 005642 142 LGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISG-YISN 215 (686)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~ 215 (686)
.+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|...|++... |+...+..+... +...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 345566677788888888888888874 3455677777888888888888888887764 233322222211 1222
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCc-hHHHHHHHHHHHHhcCChhHHHHH
Q 005642 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKL 294 (686)
Q Consensus 216 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 294 (686)
+...+|+..|++..+.. +-+...+..+..++...|++++|...++.+++..+.+ +...+..+..++...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 33345677777777641 2346677777777778888888888888777765432 345667777777777887777777
Q ss_pred HHh
Q 005642 295 FSE 297 (686)
Q Consensus 295 ~~~ 297 (686)
|++
T Consensus 167 y~~ 169 (176)
T 2r5s_A 167 YRR 169 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.7e-07 Score=88.70 Aligned_cols=125 Identities=6% Similarity=-0.039 Sum_probs=62.6
Q ss_pred HHccCChhhHHHHHHHHHHcC----CC-chHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHH
Q 005642 247 CSSLGFLEHGKQVHGHACKVG----VI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321 (686)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~~g----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 321 (686)
+...|++++|...+.+..+.. -. .-..+++.+..+|.+.|++++|...|++
T Consensus 46 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~------------------------ 101 (307)
T 2ifu_A 46 FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEK------------------------ 101 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHH------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH------------------------
Confidence 344455555555544443321 00 0123455566666666777777666652
Q ss_pred HHHHHhhCCCCC--chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCChHHHHHHHHH
Q 005642 322 AKHIFRTMPNKS--LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-----DKFSLASVISACANISSLELGEQVFAR 394 (686)
Q Consensus 322 A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~~~~~~~~~~~a~~~~~~ 394 (686)
|.+++.....+. ..++..+...|.. |++++|+..|++..+..... ...++..+...+.+.|++++|...|++
T Consensus 102 Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 102 ASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 223333222221 2355666666666 77777777777665421000 023444555555556666666655554
Q ss_pred HH
Q 005642 395 VT 396 (686)
Q Consensus 395 ~~ 396 (686)
++
T Consensus 181 al 182 (307)
T 2ifu_A 181 EK 182 (307)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-07 Score=97.48 Aligned_cols=146 Identities=8% Similarity=-0.044 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 005642 316 CGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392 (686)
Q Consensus 316 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 392 (686)
.|++++|.+.|++..+. +...|..+...+.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46778888888887652 44678888888888888888888888887752 334667777888888888888888888
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-
Q 005642 393 ARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP- 471 (686)
Q Consensus 393 ~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p- 471 (686)
++..+.. +.+...+..+...+...|++++|.+.+++..+ ..|
T Consensus 81 ~~al~~~----------------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~ 123 (568)
T 2vsy_A 81 QQASDAA----------------------------------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ---LLPE 123 (568)
T ss_dssp HHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT
T ss_pred HHHHhcC----------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCC
Confidence 7776543 22677899999999999999999999999884 345
Q ss_pred ChhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 005642 472 EIEHYSCMVDLFARA---GCLNEAVNLIEQM 499 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 499 (686)
+...+..+..++... |++++|.+.+++.
T Consensus 124 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 678899999999999 9999999999987
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5.8e-07 Score=79.22 Aligned_cols=128 Identities=10% Similarity=0.096 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
...+..+...+...|++++|...|++..+. .| +...+..++.++...|++++|...+++. ...| +...|..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 356777888889999999999999998842 34 6888999999999999999999999987 3334 5778899999
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH--HHhhcCCcchHHHHHHHHHh
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSS--IFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~ 567 (686)
.+...|++++|...++++++..|++...+..+.. .+...|++++|.+.+....+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999999998887755444 48888999999999887654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=6e-07 Score=75.61 Aligned_cols=116 Identities=13% Similarity=0.079 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSIL 512 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li 512 (686)
+...+..+...+...|++++|...|++.. ...| +...+..+..++...|++++|...+++.. ..| +...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 45667777777888888888888888876 2344 56777778888888888888888887762 333 566777777
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCC
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 554 (686)
..+...|++++|...++++++..|.+...+..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 778888888888888888888888777777777777766553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=7e-07 Score=74.80 Aligned_cols=119 Identities=9% Similarity=-0.005 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
+...+..+...+...|++++|...+++.... .+.+...+..++..+...|++++|...+++. ...| +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 4567778888889999999999999998842 2236788889999999999999999999887 2334 5778888889
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcc
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 556 (686)
.+...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999888999999998888764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.5e-05 Score=75.82 Aligned_cols=162 Identities=9% Similarity=-0.017 Sum_probs=101.4
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH--HHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHH
Q 005642 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE--LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALF 425 (686)
Q Consensus 348 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~ 425 (686)
+++++++.+++++.+. -+-+..+++.-.-.+.+.|.++ ++.+.++.+++...
T Consensus 124 ~~~~~EL~~~~~~l~~-~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~------------------------- 177 (306)
T 3dra_A 124 FDPYREFDILEAMLSS-DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL------------------------- 177 (306)
T ss_dssp CCTHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-------------------------
T ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-------------------------
Confidence 5566666666666654 2334445544444444445444 55555555444432
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCC------HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHH-HHHHHH
Q 005642 426 NEMRNTGVKPTIITFTAILSACDHCGL------VKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNE-AVNLIE 497 (686)
Q Consensus 426 ~~m~~~~~~p~~~~~~~ll~~~~~~g~------~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~ 497 (686)
. |...|+.-...+.+.+. ++++++.++++.. ..| |...|+.+...+.+.|+..+ +..+.+
T Consensus 178 --------~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 178 --------K-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp --------T-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred --------C-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 2 44445444444444444 7788888888773 345 77888888888888887444 455666
Q ss_pred hCC-C----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc-cCCCCchhHHHHHH
Q 005642 498 QMP-F----EADVGMWSSILRGCVAHGDKGLGRKVAERMIE-LDPENACAYIQLSS 547 (686)
Q Consensus 498 ~~~-~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~ 547 (686)
+.. . ..+...+..++..+.+.|+.++|.++++.+.+ .+|.+...|...+.
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 652 1 23567788888888888888888888888886 78877776665554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.54 E-value=9.6e-07 Score=73.23 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRG 514 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~ 514 (686)
...+..+...+...|++++|.++++++.+. .+.+...+..++..+.+.|++++|...++++. .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 467777888888899999999999988743 22367788888888999999999999888872 33367778888888
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC
Q 005642 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553 (686)
Q Consensus 515 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 553 (686)
+...|++++|...++++++..|+++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 889999999999999999989988888888887776543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.1e-05 Score=76.37 Aligned_cols=212 Identities=11% Similarity=0.052 Sum_probs=150.3
Q ss_pred ChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC--ChHHHHHHHHHHHHhCCCcchhHHHHHHHHH----Hhc---h
Q 005642 349 SPIEALDLFCNMNKLDLRMDKF-SLASVISACANIS--SLELGEQVFARVTIIGLDSDQIISTSLVDFY----CKC---G 418 (686)
Q Consensus 349 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---~ 418 (686)
..++|+.++++++.. .|+.. .++.--..+...+ +++++++.++.++.... -+..+|+.--..+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccC
Confidence 335677777777663 44433 3454445555556 77777777777766542 2333343322222 222 2
Q ss_pred h--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCC-----
Q 005642 419 Y--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVK--EGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGC----- 488 (686)
Q Consensus 419 ~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~----- 488 (686)
+ +++.+++++.+...+ +..+|+.-...+.+.|.++ ++++.++++.+ ..| |...|+.-..++.+.|.
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccchhh
Confidence 2 777777777776544 7777877777777778877 99999999984 345 77788877777877776
Q ss_pred -hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH-HHHHHHHHHccC---CCCchhHHHHHHHHhhcCCcchHHHH
Q 005642 489 -LNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGL-GRKVAERMIELD---PENACAYIQLSSIFATSGEWEKSSLI 561 (686)
Q Consensus 489 -~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (686)
++++++.++++ ...| |...|+.+...+.+.|+... ...+..++.+++ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 88899988877 3445 68889988888888887444 566888888766 77888999999999999999999999
Q ss_pred HHHHHh
Q 005642 562 RDIMRE 567 (686)
Q Consensus 562 ~~~~~~ 567 (686)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.2e-07 Score=83.21 Aligned_cols=122 Identities=7% Similarity=0.075 Sum_probs=100.4
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCCh--
Q 005642 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRG-CVAHGDK-- 521 (686)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~-~~~~g~~-- 521 (686)
+...|++++|...+++..+. .+.+...+..++.+|...|++++|...|++.. ..| +...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 34578899999999988742 22367899999999999999999999999873 334 67778888888 7789998
Q ss_pred hHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 522 GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 522 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
++|+..++++++..|+++.++..++.+|...|++++|...++++.+..+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999998887543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=6.3e-07 Score=76.82 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=86.6
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 005642 468 HIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544 (686)
Q Consensus 468 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 544 (686)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3455 4566777888888999999999999887 3444 67778888899999999999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 545 LSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 545 l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
++.+|...|++++|.+.+++..+..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999887654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=5.3e-07 Score=90.09 Aligned_cols=129 Identities=12% Similarity=0.012 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----------------hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE----------------IEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
+...+..+...+.+.|++++|+..|++..+ +.|+ ...|..+..+|.+.|++++|+..|++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS---WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346778888899999999999999999884 2343 488999999999999999999999988
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHH-HHHHHHHh
Q 005642 500 -PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS-LIRDIMRE 567 (686)
Q Consensus 500 -~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 567 (686)
...| +...|..+..++...|++++|+..+++++++.|++..++..++.++...|++++|. ..++.|.+
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445 67889999999999999999999999999999999999999999999999999994 46676654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4.1e-07 Score=85.15 Aligned_cols=134 Identities=9% Similarity=0.037 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---H-HHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD---V-GMWS 509 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-~~~~ 509 (686)
+...+..+...+...|++++|+..|+++.+.....|. ...+..++.+|.+.|++++|+..|+++ ...|+ . ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445556666778888888888888888743222222 457778888888888888888888876 22332 1 2344
Q ss_pred HHHHHHH------------------hcCChhHHHHHHHHHHccCCCCchhH-----------------HHHHHHHhhcCC
Q 005642 510 SILRGCV------------------AHGDKGLGRKVAERMIELDPENACAY-----------------IQLSSIFATSGE 554 (686)
Q Consensus 510 ~li~~~~------------------~~g~~~~A~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~g~ 554 (686)
.+..++. ..|+.++|+..++++++..|+++.++ ..++..|...|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4444443 36789999999999999999987655 467888999999
Q ss_pred cchHHHHHHHHHhcC
Q 005642 555 WEKSSLIRDIMREKH 569 (686)
Q Consensus 555 ~~~a~~~~~~~~~~~ 569 (686)
+++|...++++.+..
T Consensus 163 ~~~A~~~~~~~l~~~ 177 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDY 177 (225)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999999998754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.50 E-value=7.7e-07 Score=72.21 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=83.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--CchhHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE--NACAYIQLSS 547 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 547 (686)
+...+..++..+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++..|+ +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4566777888888888888888888876 2333 5777888889999999999999999999999999 8899999999
Q ss_pred HHhhc-CCcchHHHHHHHHHhcCC
Q 005642 548 IFATS-GEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 548 ~~~~~-g~~~~a~~~~~~~~~~~~ 570 (686)
++... |++++|.+.++...+..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.49 E-value=3.6e-06 Score=77.66 Aligned_cols=125 Identities=11% Similarity=0.022 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChh
Q 005642 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDT 219 (686)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 219 (686)
+..+...+...|++++|...|++..+++...+..+...+.+.|++++|...|++..+ .+..+|..+...|...|+++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 445666677778888888888888777777777777777778888888777776542 35667777777777778888
Q ss_pred HHHHHHHHHHHCCC--------------Cc-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 005642 220 EALLLFHKMRRNGV--------------LE-DASTLASVLSACSSLGFLEHGKQVHGHACKVG 267 (686)
Q Consensus 220 ~A~~~~~~m~~~g~--------------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 267 (686)
+|++.|++..+..- .| ....+..+..++...|++++|...++...+..
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88887777776421 11 12456666666777777777777777776654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-05 Score=77.66 Aligned_cols=198 Identities=8% Similarity=-0.041 Sum_probs=106.9
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhh---HHHHHHHHHccCCHHHHHHHHhhcCCC---Ch------h
Q 005642 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC---LSALISGYANCGKMNDARRVFDRTTDT---SS------V 203 (686)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~---~~------~ 203 (686)
..|+..+...+...+.-. ++ .++..-...+... +...+..+...|++++|...+++..+. +. .
T Consensus 42 ~~~~~~~l~~i~~~l~~~--~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~ 116 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIP--II---HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ 116 (293)
T ss_dssp CCCCHHHHHHHHHHHTCC--TH---HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcC--HH---HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHH
Confidence 456666666665554321 11 2222222222222 222345566677777777777654331 11 1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-cC----HHHHHHHHHHHHccCChhhHHHHHHHHHHc-----CCCc-hH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVL-ED----ASTLASVLSACSSLGFLEHGKQVHGHACKV-----GVID-DV 272 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~~~-~~ 272 (686)
.+..+...+...|++++|+..|++..+.... ++ ..+++.+..++...|++++|...++++++. +..+ ..
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 2334555556666777777777777663211 12 225666666777777777777777766631 1111 12
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC--chhHHHHHHHHHhCCC-
Q 005642 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS--LISWNSMIVGLSQNGS- 349 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~- 349 (686)
.++..+...|.+.|++++|...+++ |.++........ ..+|..+..++.+.|+
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~------------------------al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 252 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNK------------------------AIEISCRINSMALIGQLYYQRGECLRKLEYE 252 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH------------------------HHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 3556666667777777777666653 222222222211 3467777777777774
Q ss_pred hhhHHHHHHHHHH
Q 005642 350 PIEALDLFCNMNK 362 (686)
Q Consensus 350 ~~~A~~~~~~m~~ 362 (686)
+++|...|++...
T Consensus 253 ~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 253 EAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4777777776653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.45 E-value=4.9e-07 Score=78.05 Aligned_cols=100 Identities=9% Similarity=0.049 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
...+..+...+.+.|++++|...|+++.+ +.| +...|..+..+|...|++++|+..|++. ...| ++..|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 45677888899999999999999999983 456 6889999999999999999999999998 3555 5778999999
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCc
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 539 (686)
++...|++++|+..+++++++.|+.+
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=73.35 Aligned_cols=96 Identities=18% Similarity=0.076 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
...+..++..+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666677777777777777777766 2334 56777888888888888888888888888888888888888888888
Q ss_pred hcCCcchHHHHHHHHHhc
Q 005642 551 TSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 551 ~~g~~~~a~~~~~~~~~~ 568 (686)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 888888888888877764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.3e-05 Score=76.51 Aligned_cols=128 Identities=9% Similarity=-0.027 Sum_probs=100.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCC----HH
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQMP-----FEAD----VG 506 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~ 506 (686)
+..+...+...+++++|+..++++.+...-.++ ..+++.++.+|...|++++|...|+++- ...+ ..
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 344666777888999999999999842222223 3478999999999999999999998872 2112 34
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------chhHHHHHHHHhhcCC-cchHHHHHHHHHh
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPEN------ACAYIQLSSIFATSGE-WEKSSLIRDIMRE 567 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~ 567 (686)
++..+...|...|++++|+..+++++++.+.. +.+|..++.+|...|+ +++|.+.+++..+
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 68889999999999999999999999854332 5678999999999995 6999999988775
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.43 E-value=5.2e-07 Score=87.61 Aligned_cols=194 Identities=10% Similarity=-0.058 Sum_probs=123.0
Q ss_pred chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 005642 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413 (686)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 413 (686)
...+..+...+.+.|++++|+..|++..+. .+.+...+..+..++.+.|++++|...++.+++..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 68 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------------- 68 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------
Confidence 345666667777777777777777777764 12255666677777777777777777776665432
Q ss_pred HHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHH
Q 005642 414 YCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEA 492 (686)
Q Consensus 414 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 492 (686)
+.+...+..+..++...|++++|...|++..+. .|+ ...+...+....+......
T Consensus 69 --------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~- 124 (281)
T 2c2l_A 69 --------------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKR- 124 (281)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHH-
T ss_pred --------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHH-
Confidence 125567778888888899999999999887632 231 1111111111111111111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc-CCcchHHHHHHHHHhc
Q 005642 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS-GEWEKSSLIRDIMREK 568 (686)
Q Consensus 493 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 568 (686)
+.........++......+.. + ..|+.++|.+.++++++.+|++......+...+.+. +++++|.+++.++.+.
T Consensus 125 ~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 125 WNSIEERRIHQESELHSYLTR-L-IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 111222333344444333333 2 268899999999999999998877777777777766 7899999999877653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.3e-06 Score=77.17 Aligned_cols=156 Identities=12% Similarity=-0.006 Sum_probs=90.6
Q ss_pred ccCCHHHHHH---HHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCc-CHHHHHHHHHHHHccCChh
Q 005642 183 NCGKMNDARR---VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR----NGVLE-DASTLASVLSACSSLGFLE 254 (686)
Q Consensus 183 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~~~~~ 254 (686)
..|++++|.+ .+..-+.....++..+...+...|++++|+..+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44333333456677777778888888888888877655 11122 2345566666677777777
Q ss_pred hHHHHHHHHHHc----CCCc--hHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhh
Q 005642 255 HGKQVHGHACKV----GVID--DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328 (686)
Q Consensus 255 ~a~~~~~~~~~~----g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 328 (686)
+|...+++..+. +..+ ....+..+...+...|++++|...+++. .++...
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------------l~~~~~ 139 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS------------------------LVYAQQ 139 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH------------------------HHHHHh
Confidence 777777766553 1111 2345666777777777777777776632 222222
Q ss_pred CCCCC--chhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005642 329 MPNKS--LISWNSMIVGLSQNGSPIEALDLFCNMNK 362 (686)
Q Consensus 329 ~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (686)
...+. ..++..+...+...|++++|...+++..+
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 22211 12345666667777777777776666543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=8.4e-07 Score=73.53 Aligned_cols=94 Identities=14% Similarity=0.026 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc
Q 005642 475 HYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552 (686)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 552 (686)
.+..++..+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4566777888899999999999887 3445 6778888999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhc
Q 005642 553 GEWEKSSLIRDIMREK 568 (686)
Q Consensus 553 g~~~~a~~~~~~~~~~ 568 (686)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.39 E-value=1e-05 Score=78.95 Aligned_cols=127 Identities=12% Similarity=-0.025 Sum_probs=97.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC-----HHH
Q 005642 441 TAILSACDHCGLVKEGQKWFDAMKWQYHI--DPE--IEHYSCMVDLFARAGCLNEAVNLIEQMP----FEAD-----VGM 507 (686)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~ 507 (686)
..+...+...|++++|+..+++..+...- .+. ..+++.++..|...|++++|...|++.. ..|+ ..+
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~ 198 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHH
Confidence 34555677888999999999988732111 111 4588899999999999999999998762 1222 257
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCC------CchhHHHHHHHHhhcCCcchH-HHHHHHHHh
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDPE------NACAYIQLSSIFATSGEWEKS-SLIRDIMRE 567 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 567 (686)
+..+...|...|++++|+..++++++..++ ...+|..++.+|...|++++| ...+++..+
T Consensus 199 ~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 888999999999999999999999885432 256789999999999999999 777876654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-05 Score=75.07 Aligned_cols=129 Identities=6% Similarity=-0.070 Sum_probs=104.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----HHHHHHHHH
Q 005642 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV----GMWSSILRG 514 (686)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~li~~ 514 (686)
....+...+...|++++|.++|+.+. ...|+......+...+.+.|++++|+..|+.....|+. ..+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~---~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAP---VAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSC---CTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 34456677889999999999999876 23464337777788999999999999999977544433 367788889
Q ss_pred HHhcCChhHHHHHHHHHHccC--CC-CchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 515 CVAHGDKGLGRKVAERMIELD--PE-NACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 515 ~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
+...|++++|+..|+++.+-. |. .+.....++.++.+.|+.++|...++++.+..+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999998633 54 445788999999999999999999999998654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-06 Score=75.85 Aligned_cols=98 Identities=14% Similarity=0.081 Sum_probs=68.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455666666666677777777766665 2333 4666777777777777777777777777777777777777777777
Q ss_pred hhcCCcchHHHHHHHHHhcC
Q 005642 550 ATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~~ 569 (686)
...|++++|.+.+++..+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 77777777777777766543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.2e-06 Score=71.63 Aligned_cols=98 Identities=8% Similarity=-0.057 Sum_probs=83.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
+...+..++..+...|++++|...|++. ...| +...|..+...+...|++++|...++++++..|+++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 5677888888888888888888888876 2334 5777888888999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhcC
Q 005642 550 ATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~~ 569 (686)
...|++++|...+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 99999999999999888754
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.7e-05 Score=73.76 Aligned_cols=128 Identities=9% Similarity=-0.019 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcc--cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC-Cc----hhHHHHHHHHHh
Q 005642 274 VASALLDTYSKRGMPSDACKLFSELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SL----ISWNSMIVGLSQ 346 (686)
Q Consensus 274 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~li~~~~~ 346 (686)
....+...+...|++++|.++|+.+. .|+......+...+.+.+++++|+..|+..... ++ ..+..+..++.+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 44556777888888888888888876 332225566666888888888888888866542 22 367778888999
Q ss_pred CCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC
Q 005642 347 NGSPIEALDLFCNMNKLDLRMD--KFSLASVISACANISSLELGEQVFARVTIIGLD 401 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 401 (686)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++......
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 9999999999998875433254 235556667788899999999999988887543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=5.1e-06 Score=67.90 Aligned_cols=109 Identities=11% Similarity=0.027 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
...+..+...+...|++++|...+++.... .| +...+..++..+.+.|++++|...+++. ...| +...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345556666666777777777777776632 23 5566666666777777777777766665 2233 4556666666
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 548 (686)
.+...|++++|...++++++..|+++..+..++.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66677777777777777777777666655555544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=9.2e-06 Score=69.69 Aligned_cols=112 Identities=12% Similarity=0.029 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWS 509 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 509 (686)
+...+..+...+...|++++|.+.|++.. ...|+ ...+..+..+|...|++++|...+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 45667777777777888888888888776 34454 566777777777777777777777765 2333 456667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 510 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
.+..++...|++++|...++++++..|++...+..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777777777777777777777777777666665555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-06 Score=72.69 Aligned_cols=93 Identities=6% Similarity=0.024 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch-------hHHHH
Q 005642 475 HYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC-------AYIQL 545 (686)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l 545 (686)
.+..++..+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..+++++++.|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4455666666666666666666665 2334 4556666777777777777777777777776665432 45566
Q ss_pred HHHHhhcCCcchHHHHHHHHHh
Q 005642 546 SSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+.++...|++++|++.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 6677777777777777776654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=4e-06 Score=68.55 Aligned_cols=98 Identities=9% Similarity=0.140 Sum_probs=87.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
....+..++..+...|++++|...|++.. ..| +...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35677888999999999999999999873 334 6788899999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhcC
Q 005642 550 ATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~~ 569 (686)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999887643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.32 E-value=5e-06 Score=68.76 Aligned_cols=97 Identities=18% Similarity=0.322 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQMP-F-EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
...+..++..+...|++++|.+.++++. . +.+...+..+...+...|++++|...++++++..|+++.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5778889999999999999999999873 3 3367889999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhcC
Q 005642 551 TSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 551 ~~g~~~~a~~~~~~~~~~~ 569 (686)
..|++++|..+++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999888754
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.8e-06 Score=70.06 Aligned_cols=110 Identities=10% Similarity=-0.080 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
...+..+...+.+.|++++|+..|++..+ ..| +...+..+..++.+.|++++|+..+++. ...| +...|..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45677788889999999999999999884 345 6889999999999999999999999987 3455 5778999999
Q ss_pred HHHhcCChhHHHHHHHHHHccC------CCCchhHHHHHHHH
Q 005642 514 GCVAHGDKGLGRKVAERMIELD------PENACAYIQLSSIF 549 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~ 549 (686)
++...|++++|...+++++++. |++..++..+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 9999999999999999999999 87777666666554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.1e-06 Score=70.35 Aligned_cols=98 Identities=12% Similarity=0.062 Sum_probs=89.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
+...+..++..+.+.|++++|...|++. ...| +...+..+...+...|++++|+..++++++..|+++.++..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 5778899999999999999999999987 4455 6788999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhcC
Q 005642 550 ATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~~ 569 (686)
...|++++|.+.+++..+..
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999888653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.2e-06 Score=70.79 Aligned_cols=98 Identities=14% Similarity=0.078 Sum_probs=89.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 546 (686)
+...+..+...+...|++++|...|++. ...|+ ...|..+...+...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5778899999999999999999999987 56676 677888999999999999999999999999999999999999
Q ss_pred HHHhhcCCcchHHHHHHHHHhcC
Q 005642 547 SIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.++...|++++|...+++..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999888753
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=5.8e-06 Score=75.39 Aligned_cols=130 Identities=10% Similarity=-0.005 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC--------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE--------------IEHYSCMVDLFARAGCLNEAVNLIEQM-PFE 502 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 502 (686)
..+..+...+...|++++|...|++..+...-.|+ ...+..+..+|.+.|++++|+..+++. ...
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45667777888999999999999998842222221 278888999999999999999999887 334
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHH-HHHHHHHh
Q 005642 503 A-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS-LIRDIMRE 567 (686)
Q Consensus 503 p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 567 (686)
| +...+..+..++...|++++|+..+++++++.|++..++..++.++...++.+++. ..++.+..
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 57788889999999999999999999999999999999999999998888888877 45555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=3.1e-06 Score=72.97 Aligned_cols=103 Identities=10% Similarity=0.005 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSIL 512 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li 512 (686)
+...+..+...+...|++++|...|+.... ..| +...|..+..+|...|++++|+..|++. ...| +...|..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 345677788889999999999999999883 345 7889999999999999999999999987 3445 577888899
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchh
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 541 (686)
.++...|++++|+..+++++++.|+++..
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999999999987664
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.29 E-value=2.9e-06 Score=72.61 Aligned_cols=105 Identities=11% Similarity=0.009 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
...+..+...+.+.|++++|...|++... ..| +...|..+..++.+.|++++|+..|++. ...| +...+..+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 34566777788999999999999999883 345 7888999999999999999999999988 3444 5677888999
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQ 544 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 544 (686)
++...|++++|+..++++++..|+++.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 9999999999999999999999988765443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.2e-06 Score=73.06 Aligned_cols=108 Identities=12% Similarity=0.038 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSIL 512 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li 512 (686)
+...+..+...+.+.|++++|++.|++..+ +.| +...+..+..+|.+.|++++|+..|++. ...| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456788888899999999999999999984 345 7889999999999999999999999988 3445 578899999
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 546 (686)
.++...|++++|+..+++++++.|++...+...+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999999888655444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.27 E-value=5.2e-05 Score=73.94 Aligned_cols=169 Identities=8% Similarity=-0.031 Sum_probs=108.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-H----HHHHHHHHHHHccCChhhHHHHHHHHHHcCC---Cc--hHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLED-A----STLASVLSACSSLGFLEHGKQVHGHACKVGV---ID--DVI 273 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~--~~~ 273 (686)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...+.+..+... .+ ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567777888888888888888776432111 1 1223344455677788888888877765321 11 144
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCCh
Q 005642 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSP 350 (686)
Q Consensus 274 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 350 (686)
+++.+...|...|++++|...|++ |.++++..... ...++..+...|...|++
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~k------------------------al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQ------------------------ILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------------------------HHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 677788888888888888887773 33333333321 124677778888888888
Q ss_pred hhHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHccCChHHH-HHHHHHHH
Q 005642 351 IEALDLFCNMNKLD----LRM-DKFSLASVISACANISSLELG-EQVFARVT 396 (686)
Q Consensus 351 ~~A~~~~~~m~~~g----~~p-~~~t~~~ll~~~~~~~~~~~a-~~~~~~~~ 396 (686)
++|+..+++..+.. ... -..+|..+..++.+.|++++| ...++...
T Consensus 213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 88888887765431 111 145677777888888888888 66676544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.9e-06 Score=72.47 Aligned_cols=63 Identities=5% Similarity=-0.039 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcc-------CCCCchhH----HHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIEL-------DPENACAY----IQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|+..+++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888889999999999999999999998 99999999 99999999999999999999988774
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=8e-06 Score=68.15 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=88.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
+...+..++..+...|++++|...|++.. ..| +...+..+...+...|++++|...++++++..|+++.++..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 46778889999999999999999999873 334 6788999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhcC
Q 005642 550 ATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~~ 569 (686)
...|++++|...+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999888754
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.22 E-value=6.7e-05 Score=68.25 Aligned_cols=156 Identities=10% Similarity=-0.008 Sum_probs=95.6
Q ss_pred hCCCHHHHHH---HHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChH
Q 005642 315 SCGRIEDAKH---IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL----DLRM-DKFSLASVISACANISSLE 386 (686)
Q Consensus 315 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~ 386 (686)
..|++++|.+ .+..-+......+..+...+...|++++|...+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4556666666 444433234466777778888888888888888777652 1122 2345667777788888888
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005642 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKP--TIITFTAILSACDHCGLVKEGQKWFDAMK 464 (686)
Q Consensus 387 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 464 (686)
+|...+.+..+. ++ ..+..| ....+..+...+...|++++|...+++..
T Consensus 84 ~A~~~~~~al~~--------------------------~~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEEREL--------------------------LA---SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHH--------------------------HH---HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------------------------HH---HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888888765432 11 111111 23456777788888999999999998876
Q ss_pred HhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 465 WQYHIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 465 ~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
+...-..+ ..++..+..++...|++++|.+.+++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 32111111 234566667777777777777666653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.20 E-value=5.4e-06 Score=80.34 Aligned_cols=96 Identities=8% Similarity=-0.116 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 005642 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 281 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 281 (686)
...+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...++.+++.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455556666666666666666666666531 2245556666666666666666666666666653 2345566666666
Q ss_pred HHhcCChhHHHHHHHhcc
Q 005642 282 YSKRGMPSDACKLFSELK 299 (686)
Q Consensus 282 ~~~~g~~~~A~~~~~~~~ 299 (686)
|...|++++|...|++..
T Consensus 82 ~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 666777777766666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-05 Score=72.02 Aligned_cols=103 Identities=5% Similarity=0.072 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH-HHhcCCh--HHHHHHHHhC-CCCC-CHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDL-FARAGCL--NEAVNLIEQM-PFEA-DVGMWS 509 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~--~~A~~~~~~~-~~~p-~~~~~~ 509 (686)
+...+..+...+...|++++|...|++..+. .| +...+..++.+ +...|++ ++|...++++ ...| +...+.
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 119 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHH
Confidence 6678888899999999999999999998842 34 67788888888 7889998 9999999987 3445 577888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 005642 510 SILRGCVAHGDKGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 510 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 541 (686)
.+...+...|++++|...++++++..|+++..
T Consensus 120 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 89999999999999999999999999987653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.19 E-value=2.8e-05 Score=68.11 Aligned_cols=94 Identities=7% Similarity=-0.043 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 282 (686)
..|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...++...+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555555666666666666666655531 2244555555555556666666666666655543 23444555555555
Q ss_pred HhcCChhHHHHHHHhc
Q 005642 283 SKRGMPSDACKLFSEL 298 (686)
Q Consensus 283 ~~~g~~~~A~~~~~~~ 298 (686)
...|++++|...|++.
T Consensus 92 ~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 92 MALGKFRAALRDYETV 107 (166)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 5666666665555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=5.3e-06 Score=69.32 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C----CCC----HHH
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-F----EAD----VGM 507 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~p~----~~~ 507 (686)
.++..+...+.+.|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.+++.. + .++ ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 5677888999999999999999999983 456 68899999999999999999999998872 2 222 246
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 537 (686)
|..+..++...|++++|+..++++++..|+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 778888999999999999999999998884
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=8.6e-06 Score=68.92 Aligned_cols=100 Identities=9% Similarity=-0.032 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005642 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSI 511 (686)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 511 (686)
.+...+..+...+...|++++|...|+.... ..| +...+..++.++...|++++|...+++. ...| +...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 4678888999999999999999999999884 234 6889999999999999999999999987 3444 57889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCC
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~ 537 (686)
..++...|++++|+..++++++..|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999998887
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.16 E-value=5.5e-06 Score=69.28 Aligned_cols=90 Identities=11% Similarity=0.056 Sum_probs=52.7
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHHHHh
Q 005642 479 MVDLFARAGCLNEAVNLIEQMP-FEAD-V---GMWSSILRGCVAHGDKGLGRKVAERMIELDPEN---ACAYIQLSSIFA 550 (686)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 550 (686)
++..+...|++++|...|++.. ..|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 4444555556666655555541 1222 1 345555566666666666666666666666665 555666666666
Q ss_pred hcCCcchHHHHHHHHHhc
Q 005642 551 TSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 551 ~~g~~~~a~~~~~~~~~~ 568 (686)
..|++++|...++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666666553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.6e-05 Score=82.95 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-------------IEHYSCMVDLFARAGCLNEAVNLIEQM-PFE 502 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 502 (686)
...+..+...+.+.|++++|+..|++..+.....++ ...|..+..+|.+.|++++|+..++++ ...
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 456777888899999999999999998842221111 578999999999999999999999987 344
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH-HHHHHHhc
Q 005642 503 A-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL-IRDIMREK 568 (686)
Q Consensus 503 p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~ 568 (686)
| +...|..+..++...|++++|+..++++++++|++..++..++.++...|+++++.+ .++.|..+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 578899999999999999999999999999999999999999999999999998876 45655543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00057 Score=66.96 Aligned_cols=122 Identities=11% Similarity=-0.008 Sum_probs=69.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-------HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCCh---
Q 005642 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGL-------VKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCL--- 489 (686)
Q Consensus 421 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-------~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~--- 489 (686)
+++.++++.+..+. |...|+.....+.+.+. ++++++.++++.. ..| |...|+.+-..+.+.|+.
T Consensus 186 ELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 186 ELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCccc
Confidence 44444555544333 66666666666666654 6788888888773 456 677887777777776654
Q ss_pred -----------------HHHHHHHHhCC-C-------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-ccCCCCchhHH
Q 005642 490 -----------------NEAVNLIEQMP-F-------EADVGMWSSILRGCVAHGDKGLGRKVAERMI-ELDPENACAYI 543 (686)
Q Consensus 490 -----------------~~A~~~~~~~~-~-------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~ 543 (686)
.+..++..++. . .+....+..+++.|...|+.++|.++++.+. +.+|-....|.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 23333333331 1 2345556666666666676677777776665 45665554444
Q ss_pred HHH
Q 005642 544 QLS 546 (686)
Q Consensus 544 ~l~ 546 (686)
-.+
T Consensus 342 ~~~ 344 (349)
T 3q7a_A 342 FRR 344 (349)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=6.7e-06 Score=68.01 Aligned_cols=97 Identities=9% Similarity=0.013 Sum_probs=80.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCV 516 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~ 516 (686)
+..+...+.+.|++++|+..|++..+ ..| +...+..+..++...|++++|+..|++. ...| +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45566778899999999999999984 345 7889999999999999999999999987 3556 5778899999999
Q ss_pred hcCChhHHHHHHHHHHccCCCCc
Q 005642 517 AHGDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~p~~~ 539 (686)
..|++++|+..++++++.+|++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999999764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=6e-06 Score=86.58 Aligned_cols=118 Identities=10% Similarity=0.118 Sum_probs=100.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005642 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHG 519 (686)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g 519 (686)
+...+.+.|++++|.+.+++..+ ..| +...+..+..+|.+.|++++|++.+++. ...| +...|..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456788999999999999984 345 6889999999999999999999999988 3555 5788999999999999
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHH--HhhcCCcchHHHHHH
Q 005642 520 DKGLGRKVAERMIELDPENACAYIQLSSI--FATSGEWEKSSLIRD 563 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 563 (686)
++++|+..++++++..|++..++..++.+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999888 888999999999987
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.10 E-value=8.8e-06 Score=71.37 Aligned_cols=64 Identities=6% Similarity=0.123 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 505 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4568888888899999999999999999999999999999999999999999999999887764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1.5e-05 Score=80.32 Aligned_cols=123 Identities=8% Similarity=-0.003 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhc-------------CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQY-------------HIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFE 502 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-------------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 502 (686)
..+..+...+.+.|++++|++.|++..+.. ...| +...|..+..+|.+.|++++|++.+++. ...
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 456777788889999999999999887410 1233 4677888888889999999999988887 455
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 503 A-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 503 p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
| +...|..+..++...|++++|+..+++++++.|++..++..+..++...++++++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 467788888888899999999999999999999888888888888888887777765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.3e-05 Score=66.84 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-------chhHHHHH
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN-------ACAYIQLS 546 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~ 546 (686)
+..++..+...|++++|...|++.. .+.+...+..+...+...|++++|...++++++..|++ ..++..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 3334444444444444444444331 11133444444444555555555555555555544433 44455555
Q ss_pred HHHhhcCCcchHHHHHHHHHh
Q 005642 547 SIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.++...|++++|.+.++++.+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555554444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.8e-06 Score=69.81 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=58.7
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 486 AGCLNEAVNLIEQM-PF---EA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 486 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++..|+++.++..++.++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666677766665 23 24 345577777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhc
Q 005642 561 IRDIMREK 568 (686)
Q Consensus 561 ~~~~~~~~ 568 (686)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.07 E-value=3e-05 Score=64.64 Aligned_cols=105 Identities=8% Similarity=0.045 Sum_probs=84.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-Ch---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHH
Q 005642 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EI---EHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD----VGMWSSI 511 (686)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l 511 (686)
..+...+...|++++|...|+.+.+. .| +. ..+..++.++.+.|++++|...|++. ...|+ ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 34556778899999999999999843 24 33 58888999999999999999999987 23343 5668888
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 548 (686)
..++...|++++|...++++++..|+++........+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 9999999999999999999999999887655544443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.07 E-value=6.5e-06 Score=82.12 Aligned_cols=126 Identities=7% Similarity=-0.052 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChh------------------HHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE------------------HYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
..+..+...+.+.|++++|...|++... +.|+.. .|..+..+|.+.|++++|+..+++.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777788889999999999998773 334332 4444444455555555555544444
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH-hhcCCcchHHHHHHHHH
Q 005642 500 -PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF-ATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 500 -~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~ 566 (686)
...| +...|..+..++...|++++|+..+++++++.|++..++..+..+. ...+..+.+...+++|.
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1222 3444444444455555555555555555555554444444444442 22334444444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-05 Score=66.98 Aligned_cols=112 Identities=8% Similarity=-0.008 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C----CCC----HHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-F----EAD----VGM 507 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~p~----~~~ 507 (686)
...+..+...+...|++++|...|++..+. .+.+...+..++..+...|++++|...+++.. . .++ ...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 356777888899999999999999998843 23368889999999999999999999999872 2 223 677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhh
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 551 (686)
+..+...+...|++++|...++++++..| ++.....+..+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 88899999999999999999999999988 56666666665544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.9e-05 Score=63.76 Aligned_cols=102 Identities=10% Similarity=-0.029 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA---DVGMWSSI 511 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l 511 (686)
+...+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|...+++. ...| +...|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3456677788899999999999999998842 2236788999999999999999999999987 3444 47889999
Q ss_pred HHHHHhc-CChhHHHHHHHHHHccCCCCc
Q 005642 512 LRGCVAH-GDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 512 i~~~~~~-g~~~~A~~~~~~~~~~~p~~~ 539 (686)
...+... |++++|.+.++++++..|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999 999999999999999999764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-05 Score=69.85 Aligned_cols=131 Identities=10% Similarity=0.006 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----H
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQMP----FEAD----V 505 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~ 505 (686)
.++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++.. ..++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46777888889999999999999997642211122 2578889999999999999999998862 1112 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCC------CCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDP------ENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..+..+...+...|++++|...++++++..+ ....++..++.++...|++++|.+.+++..+.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5677888889999999999999999987532 12456888999999999999999999987753
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.04 E-value=6.5e-06 Score=82.08 Aligned_cols=116 Identities=6% Similarity=0.002 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----------------HHHHHHHH
Q 005642 451 GLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD----------------VGMWSSIL 512 (686)
Q Consensus 451 g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~li 512 (686)
+++++|.+.++.... ..| +...+..+...+.+.|++++|...|++. ...|+ ...|..+.
T Consensus 127 ~~~~~A~~~~~~a~~---~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSE---EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHH---HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 445555555554431 234 4678889999999999999999999987 33443 47899999
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.++.+.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+..
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999888753
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00035 Score=68.47 Aligned_cols=216 Identities=10% Similarity=0.037 Sum_probs=132.4
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc-h---
Q 005642 345 SQNGSPIEALDLFCNMNKLDLRMDK-FSLASVISACANIS-SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-G--- 418 (686)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~--- 418 (686)
...+..++|+++++++... .|+. ..++.--..+...| .++++++.++.+++.. +.+..+|+.--..+.+. +
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 3444455677777777663 3433 33444444444555 4677777777666654 33444444443333333 3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCC-
Q 005642 419 YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK--------EGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGC- 488 (686)
Q Consensus 419 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~- 488 (686)
++++++++++.+...+ |..+|+.-...+.+.|.++ ++++.++++.+ ..| |...|+....++.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~---~dp~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR---VDGRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp HHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcccc
Confidence 2677777777665433 5666665544444444444 88888888883 345 77888888888888776
Q ss_pred ------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHHHccC-----
Q 005642 489 ------LNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDK--------------------GLGRKVAERMIELD----- 535 (686)
Q Consensus 489 ------~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~~----- 535 (686)
++++++.++++ ...| |...|+.+-..+.+.|+. .........+....
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 67888888776 3445 677788777777766654 22233333333322
Q ss_pred -CCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 536 -PENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 536 -p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+..+.++..++.+|.+.|+.++|.++++.+.+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 45667788889999999999999999998864
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0011 Score=64.73 Aligned_cols=177 Identities=8% Similarity=0.015 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhch----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHH
Q 005642 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----YDALALFNEMRNTGVKPTIITFTAILSACDHCGL-VKEGQKWF 460 (686)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~A~~~~ 460 (686)
+++..+++.+.... +-+..+|+.-...+.+.+ ++++.+++++.+...+ |..+|+.-...+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 44444444444432 223333333333333333 1455555555554433 55555555555555565 46777777
Q ss_pred HHHHHhcCCCC-ChhHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----
Q 005642 461 DAMKWQYHIDP-EIEHYSCMVDLFARA--------------GCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAH----- 518 (686)
Q Consensus 461 ~~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~----- 518 (686)
+.+.+ ..| |...|+....++.+. +.++++++.+++. ...| |...|+-+-..+...
T Consensus 169 ~~~I~---~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHH---HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHH---HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 77663 234 555666555555544 3456666666665 2334 455565444444433
Q ss_pred ------CChhHHHHHHHHHHccCCCCchhHHHHHHHH---hhcCCcchHHHHHHHHHh
Q 005642 519 ------GDKGLGRKVAERMIELDPENACAYIQLSSIF---ATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 519 ------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~ 567 (686)
+.++++++.++++++..|++..++..++... ...|..++...++.++++
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3467777778888888887754444433322 235666677777777765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.03 E-value=8.3e-06 Score=69.59 Aligned_cols=105 Identities=11% Similarity=0.014 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CC--
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-------------IEHYSCMVDLFARAGCLNEAVNLIEQM-PF-- 501 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-- 501 (686)
..+......+.+.|++++|+..|++..+ +.|+ ...|..+..++.+.|++++|+..+++. .+
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 4456667778899999999999999884 3343 238999999999999999999999877 35
Q ss_pred -----CCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 005642 502 -----EAD-VGMW----SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545 (686)
Q Consensus 502 -----~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 545 (686)
.|+ ...| .....++...|++++|+..|++++++.|++..++..+
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 886 5568 8999999999999999999999999999887754433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=70.71 Aligned_cols=114 Identities=12% Similarity=0.037 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhc------CC---------CC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQY------HI---------DP-EIEHYSCMVDLFARAGCLNEAVNLIEQM- 499 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 499 (686)
...+......+.+.|++++|+..|++..... .- .| +...|..+..+|.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3567777888999999999999999987420 00 22 3468899999999999999999999987
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc-hhHHHHHHHHh
Q 005642 500 PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA-CAYIQLSSIFA 550 (686)
Q Consensus 500 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~ 550 (686)
...| +...|..+..++...|++++|...++++++++|+++ .+...+..+..
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3455 578899999999999999999999999999999887 44444444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=73.03 Aligned_cols=93 Identities=11% Similarity=-0.002 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC----------------HHHHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLED----------------ASTLASVLSACSSLGFLEHGKQVHGHACKVG 267 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 267 (686)
.+..+...+...|++++|+..|++..+.. +.+ ...+..+..++...|++++|...++..++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45555555566666666666666655531 111 1344444455555555555555555555542
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHhc
Q 005642 268 VIDDVIVASALLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 298 (686)
+.+...+..+..+|...|++++|...|++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 224444555555555555555555555543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.1e-05 Score=66.20 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=74.1
Q ss_pred ccCCHHHHHHHHHHHHHhcCC-CC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 005642 449 HCGLVKEGQKWFDAMKWQYHI-DP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLG 524 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A 524 (686)
..|++++|+..|++..+ .+. .| +...+..++.+|...|++++|...|++. ...| +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 45888999999999882 211 24 5778999999999999999999999988 3445 577888999999999999999
Q ss_pred HHHHHHHHccCCCCchhH
Q 005642 525 RKVAERMIELDPENACAY 542 (686)
Q Consensus 525 ~~~~~~~~~~~p~~~~~~ 542 (686)
+..++++++..|+++...
T Consensus 81 ~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHH
Confidence 999999999999886643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00034 Score=72.36 Aligned_cols=197 Identities=7% Similarity=-0.098 Sum_probs=116.1
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-cch
Q 005642 342 VGLSQNGSPIEALDLFCNMNKLDLRMD----------------KFSLASVISACANISSLELGEQVFARVTIIGLD-SDQ 404 (686)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 404 (686)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+.+..+.+.-.. ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345556667777776666665422111 123556677777777777777777655432100 000
Q ss_pred hHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCCC-ChhHHHHHH
Q 005642 405 IISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW---QYHIDP-EIEHYSCMV 480 (686)
Q Consensus 405 ~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~p-~~~~~~~l~ 480 (686)
.. ...+.+.+...+...|+.++|.++++.... ..+..+ ...++..++
T Consensus 92 ~~-----------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la 142 (434)
T 4b4t_Q 92 KT-----------------------------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLA 142 (434)
T ss_dssp HH-----------------------------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHH
T ss_pred HH-----------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 00 011223333344556777777777776542 122222 245677778
Q ss_pred HHHHhcCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC---CC----chhHHHH
Q 005642 481 DLFARAGCLNEAVNLIEQMP-------FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDP---EN----ACAYIQL 545 (686)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~-------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---~~----~~~~~~l 545 (686)
..|...|++++|..+++++. .+| ....+..++..|...|++++|...+++++...| +. ...+..+
T Consensus 143 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 222 (434)
T 4b4t_Q 143 TLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMS 222 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Confidence 88888888888888777651 112 245577777788888888888888887776432 11 2345566
Q ss_pred HHHHhhcCCcchHHHHHHHHHh
Q 005642 546 SSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+..+...|++++|...+.+..+
T Consensus 223 g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 223 GILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 6677778888888887766654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00062 Score=66.42 Aligned_cols=205 Identities=11% Similarity=-0.009 Sum_probs=111.1
Q ss_pred HHHHHHHhhCCC---CCchhHHHHHHHHHhCCC--hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHH
Q 005642 320 EDAKHIFRTMPN---KSLISWNSMIVGLSQNGS--PIEALDLFCNMNKLDLRMDKFSLASVISACANISS-LELGEQVFA 393 (686)
Q Consensus 320 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~ 393 (686)
++++.+++.+.. ++..+|+.-.-.+.+.++ +++++.+++++.+.. +-|...|+.-.-.+...|. ++++.+.+.
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 344444444432 344556655555555553 567777777776652 3344555544444455555 366666666
Q ss_pred HHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-C
Q 005642 394 RVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-E 472 (686)
Q Consensus 394 ~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~ 472 (686)
.+++.. +.|...|+.....+.+.. .. .+... ..-...+.++++++.+..... ..| |
T Consensus 170 ~~I~~~-p~N~SAW~~R~~ll~~l~-----------~~--~~~~~------~~~~~~~~~~eEle~~~~ai~---~~P~d 226 (331)
T 3dss_A 170 SLITRN-FSNYSSWHYRSCLLPQLH-----------PQ--PDSGP------QGRLPENVLLKELELVQNAFF---TDPND 226 (331)
T ss_dssp HHHHHC-SCCHHHHHHHHHHHHHHS-----------CC--C------------CCCHHHHHHHHHHHHHHHH---HSTTC
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHhh-----------hc--ccccc------ccccchHHHHHHHHHHHHHHH---hCCCC
Confidence 666554 223333332221111110 00 00000 000011446777777777762 345 6
Q ss_pred hhHHHHHHHHHHhc-----------CChHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHccC
Q 005642 473 IEHYSCMVDLFARA-----------GCLNEAVNLIEQM-PFEADVGMWSSILRG-----CVAHGDKGLGRKVAERMIELD 535 (686)
Q Consensus 473 ~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~~ 535 (686)
...|+.+-..+.+. +.++++++.++++ ...||. .|..+..+ ....|..++....+.++.+++
T Consensus 227 ~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 227 QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 66776665555554 4577888888877 456654 34322222 124577888999999999999
Q ss_pred CCCchhHHHHHHHH
Q 005642 536 PENACAYIQLSSIF 549 (686)
Q Consensus 536 p~~~~~~~~l~~~~ 549 (686)
|....-|..+..-+
T Consensus 306 p~r~~~y~d~~~~~ 319 (331)
T 3dss_A 306 PMRAAYLDDLRSKF 319 (331)
T ss_dssp GGGHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHH
Confidence 98888777776544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0007 Score=72.23 Aligned_cols=134 Identities=8% Similarity=-0.001 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcC-ChHHHHHH
Q 005642 420 DALALFNEMRNTGVKPTIITFTAILSACDHCG--LVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAG-CLNEAVNL 495 (686)
Q Consensus 420 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~ 495 (686)
++++.++++.+...+ +..+|..-...+.+.+ +++++++.++++.+ ..| +...|+.-..++.+.| .++++++.
T Consensus 91 ~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 91 AELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHH
Confidence 455555555554444 6777877777788888 77999999999984 345 7888998888889999 89999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhc--------------CChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcch
Q 005642 496 IEQM-PFEA-DVGMWSSILRGCVAH--------------GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557 (686)
Q Consensus 496 ~~~~-~~~p-~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 557 (686)
++++ ...| +...|+.....+... +.++++++.+.+++..+|++..+|..+.+++.+.+++++
T Consensus 167 ~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 9988 4555 677888888877663 557999999999999999999999999999999998666
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=3.1e-05 Score=80.59 Aligned_cols=129 Identities=12% Similarity=0.040 Sum_probs=101.7
Q ss_pred HHhccCCHHHHHHHHHHHHHhc--CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHH
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQY--HIDP----EIEHYSCMVDLFARAGCLNEAVNLIEQM---------PFEAD-VGMWS 509 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 509 (686)
.+...|++++|+.++++..+.. -+.| ...+++.|+.+|...|++++|..++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567899999999998876422 1223 2568999999999999999999999876 13344 45689
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHc-----cCCCCchh---HHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCC
Q 005642 510 SILRGCVAHGDKGLGRKVAERMIE-----LDPENACA---YIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574 (686)
Q Consensus 510 ~li~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 574 (686)
.|...|...|++++|+.+++++++ +.|+++.+ ...+..++.+.+++++|+..++++++...+..|
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998 56776544 456778888999999999999999986654444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.2e-05 Score=61.69 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=70.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------chhHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN------ACAYI 543 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 543 (686)
+...+..++..+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556677777788888888888888776 2334 56778888888888999999999999999988887 66777
Q ss_pred HHHHHHhhcCCcchHHHHHH
Q 005642 544 QLSSIFATSGEWEKSSLIRD 563 (686)
Q Consensus 544 ~l~~~~~~~g~~~~a~~~~~ 563 (686)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77888877777777765544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0054 Score=63.15 Aligned_cols=164 Identities=5% Similarity=-0.025 Sum_probs=88.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcC----------------HHHHHHHHHHHHccCChhhHHHHHHHHHHcC-CCchH
Q 005642 210 SGYISNNEDTEALLLFHKMRRNGVLED----------------ASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDV 272 (686)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~ 272 (686)
..+.+.|++++|++.|.++.+..-... ...+..+...|...|++++|.+.+..+.+.- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345566777777777776665321110 1124445555555555555555555444321 00111
Q ss_pred ----HHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC--CchhHHHHHHHHHh
Q 005642 273 ----IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQ 346 (686)
Q Consensus 273 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~ 346 (686)
.+.+.+...+...|+++.|..++... ..+....... -..++..+...|..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKS------------------------IEFAKREKRVFLKHSLSIKLATLHYQ 147 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHH------------------------HHHHHHSSCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------------------------HHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 12223333334455566666555422 1222222111 12356677788888
Q ss_pred CCChhhHHHHHHHHHHCCC----CCC-HHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 347 NGSPIEALDLFCNMNKLDL----RMD-KFSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~----~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
.|++++|..+++++...-. +|. ..++..++..|...|++++|..++.....
T Consensus 148 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 148 KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 8888888888877654311 121 34677778888888999999888887654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.78 E-value=8.6e-05 Score=58.71 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 504 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
+...|..+...+...|++++|+..++++++.+|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57778889999999999999999999999999999999999999999999999999999988764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.77 E-value=3.3e-05 Score=77.00 Aligned_cols=95 Identities=11% Similarity=-0.014 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH------------------HHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVG------------------MWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------------------~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
...+..+...+.+.|++++|...|++. ...|+.. .|..+..++.+.|++++|+..++++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888889999999999999986 3455543 788899999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 534 LDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 534 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
++|++..+|..++.+|...|++++|...+++..+
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00025 Score=61.40 Aligned_cols=94 Identities=11% Similarity=-0.025 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-cC----HHHHHHHHHHHHccCChhhHHHHHHHHHHcC----CCc-hH
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVL-ED----ASTLASVLSACSSLGFLEHGKQVHGHACKVG----VID-DV 272 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~-~~ 272 (686)
.++..+...+...|++++|+..+++..+..-. ++ ..++..+...+...|++++|...++...+.. .++ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35666777777777777777777776542100 11 1245555556666666666666666655421 000 13
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH
Q 005642 273 IVASALLDTYSKRGMPSDACKLFS 296 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~ 296 (686)
..+..+...+...|++++|...++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~ 113 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHL 113 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345555666666666666666655
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.76 E-value=3.4e-05 Score=80.49 Aligned_cols=116 Identities=8% Similarity=0.019 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----------------HHHHHHHH
Q 005642 451 GLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD----------------VGMWSSIL 512 (686)
Q Consensus 451 g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----------------~~~~~~li 512 (686)
+++++|.+.|+.... ..| ....+..+...+.+.|++++|...|++.. ..|+ ...|..+.
T Consensus 248 ~~~~~A~~~~~~~~~---~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTK---EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHH---HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 344455555544331 123 45678889999999999999999999872 2332 57899999
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...++++.+..
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999888643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.9e-05 Score=67.22 Aligned_cols=49 Identities=8% Similarity=0.111 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC-----------CcchHHHHHHHHHhcC
Q 005642 521 KGLGRKVAERMIELDPENACAYIQLSSIFATSG-----------EWEKSSLIRDIMREKH 569 (686)
Q Consensus 521 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~ 569 (686)
+++|+..++++++++|++..+|..++.+|...| ++++|++.+++..+..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 679999999999999999999999999999875 8999999999888754
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.74 E-value=7.6e-05 Score=60.79 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=62.1
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 491 EAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 491 ~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
+|++.|++. ...| +...|..+...+...|++++|+..++++++..|++..+|..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3344 56778888888888899999999999999888988888888999999999999999988877764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00014 Score=56.03 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++++..|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 455666666677777777777777665 2223 45667777777888888888888888888888888777777777776
Q ss_pred hcC
Q 005642 551 TSG 553 (686)
Q Consensus 551 ~~g 553 (686)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0002 Score=55.39 Aligned_cols=70 Identities=9% Similarity=-0.004 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCC
Q 005642 502 EADVGMWSSILRGCVAHGD---KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571 (686)
Q Consensus 502 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (686)
++++..+..+..++...++ .++|...++++++.+|+++.+...++..+.+.|+|++|+.+|+++.+..+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3467788888888765554 799999999999999999999999999999999999999999999986554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00012 Score=73.77 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-----------------CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 005642 474 EHYSCMVDLFARAGCLNEAVNLIEQMP-----------------FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535 (686)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 535 (686)
..+..+...+.+.|++++|++.|++.. ..| +...|..+..++.+.|++++|+..++++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346778889999999999999998762 233 35678889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 536 PENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 536 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999888753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00057 Score=57.66 Aligned_cols=112 Identities=4% Similarity=-0.188 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHH
Q 005642 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA----HGDKGLGRK 526 (686)
Q Consensus 451 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~ 526 (686)
+++++|.++|++..+ .+ .|+.. |...|...+.+++|.+.|++....-+...+..+...|.. .++.++|..
T Consensus 9 ~d~~~A~~~~~~aa~-~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACE-LN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHH-TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHc-CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 467788888888873 34 23332 777777777888888888887434567777888888877 788999999
Q ss_pred HHHHHHccCCCCchhHHHHHHHHhh----cCCcchHHHHHHHHHhcCC
Q 005642 527 VAERMIELDPENACAYIQLSSIFAT----SGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 527 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 570 (686)
.++++.+. .++.++..|+.+|.. .+++++|.+++++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99998875 467788899999988 8899999999998887653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.57 E-value=7.2e-05 Score=78.35 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=82.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCc
Q 005642 478 CMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEW 555 (686)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 555 (686)
.+...+.+.|++++|.+.|++. ...| +...|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3445567889999999999987 3455 5888999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcC
Q 005642 556 EKSSLIRDIMREKH 569 (686)
Q Consensus 556 ~~a~~~~~~~~~~~ 569 (686)
++|.+.+++..+..
T Consensus 91 ~eA~~~~~~al~~~ 104 (477)
T 1wao_1 91 RAALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988754
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=5.8e-05 Score=64.24 Aligned_cols=110 Identities=9% Similarity=0.056 Sum_probs=79.0
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCCh----------HHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005642 449 HCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCL----------NEAVNLIEQM-PFEA-DVGMWSSILRGC 515 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~-~~~p-~~~~~~~li~~~ 515 (686)
+.+.+++|.+.++...+ +.| +...|..+..++...|++ ++|+..|++. .+.| +...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 44567888888888773 345 678888888888887664 5888888887 4666 467788888888
Q ss_pred Hhc-----------CChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 516 VAH-----------GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 516 ~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
... |++++|+..|+++++++|++..... ... ..++|.+++-.+...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~-al~------~~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK-SLE------MTAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH-HHH------HHHTHHHHHHHHHHS
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH-HHH------HHHhCHhccCccccc
Confidence 876 4899999999999999998754222 222 234555555555444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0011 Score=70.67 Aligned_cols=147 Identities=10% Similarity=0.065 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcC-
Q 005642 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGL----------VKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAG- 487 (686)
Q Consensus 420 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g- 487 (686)
+|++.++++...+.. +..+|+.--..+...|+ ++++++.++.+.+ ..| +..+|..-..++.+.|
T Consensus 47 eal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 47 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHccc
Confidence 677777777766433 45566665555655666 8999999999984 345 7888999999999999
Q ss_pred -ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc-----------
Q 005642 488 -CLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHG-DKGLGRKVAERMIELDPENACAYIQLSSIFATS----------- 552 (686)
Q Consensus 488 -~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----------- 552 (686)
+++++++.++++ ...| +...|+.-...+...| ..+++++.++++++.+|.+..+|...+.++...
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 679999999998 3444 6888999888888888 899999999999999999999999999998874
Q ss_pred ---CCcchHHHHHHHHHhcCC
Q 005642 553 ---GEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 553 ---g~~~~a~~~~~~~~~~~~ 570 (686)
++++++.+++++..+..+
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCS
T ss_pred ccHHHHHHHHHHHHHHHhhCC
Confidence 567889998887776543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00026 Score=56.81 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 503 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
++...|..+...+...|++++|+..++++++..|+++.++..++.++...|++++|.+.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3466788899999999999999999999999999999999999999999999999999999888643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0013 Score=68.43 Aligned_cols=127 Identities=10% Similarity=-0.110 Sum_probs=76.4
Q ss_pred HHhcCChhHHHHHHHHHHHC---CCCc----CHHHHHHHHHHHHccCChhhHHHHHHHHHHc-----C-CCch-HHHHHH
Q 005642 212 YISNNEDTEALLLFHKMRRN---GVLE----DASTLASVLSACSSLGFLEHGKQVHGHACKV-----G-VIDD-VIVASA 277 (686)
Q Consensus 212 ~~~~g~~~~A~~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g-~~~~-~~~~~~ 277 (686)
+..+|++++|+.++++.++. -+.| ...+++.+...|...|++++|..++++.++. | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44677788888777776542 1222 1335666777777777777777777766542 2 1222 335667
Q ss_pred HHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc----hhHHHHHHHHHhCCChhhH
Q 005642 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEA 353 (686)
Q Consensus 278 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A 353 (686)
|...|...|++++|..+++ +|+++++...-++- .+.+.+..++...+.+++|
T Consensus 399 La~~~~~~G~~~eA~~~~~------------------------~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMIC------------------------KAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHH------------------------HHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH------------------------HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766 44445544444332 2344555566666777777
Q ss_pred HHHHHHHHH
Q 005642 354 LDLFCNMNK 362 (686)
Q Consensus 354 ~~~~~~m~~ 362 (686)
..+|..+.+
T Consensus 455 e~~~~~~~~ 463 (490)
T 3n71_A 455 EFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00078 Score=51.61 Aligned_cols=65 Identities=20% Similarity=0.342 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 505 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|...+++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 55688888899999999999999999999999999999999999999999999999999888753
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.001 Score=53.80 Aligned_cols=80 Identities=13% Similarity=0.134 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 005642 455 EGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERM 531 (686)
Q Consensus 455 ~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 531 (686)
+|++.|++.. ...| +...+..++..|...|++++|...|++. ...| +...|..+..++...|++++|...++++
T Consensus 3 ~a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566666666 3345 5777888888888888888888888876 2334 4667888888888888888888888888
Q ss_pred HccCCC
Q 005642 532 IELDPE 537 (686)
Q Consensus 532 ~~~~p~ 537 (686)
++..|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 887764
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00025 Score=70.52 Aligned_cols=238 Identities=11% Similarity=0.144 Sum_probs=161.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 005642 72 CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151 (686)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~ 151 (686)
+..|..|..+....+...+|++.|-+. .|...|..++.++.+. +..+.-...+...++. ..++.+=+.|+-+|+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~--~~~edLv~yL~MaRk~--~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTS--GNWEELVKYLQMARKK--ARESYVETELIFALA 127 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTS--SCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHH--hcccccHHHHHHHHH
Confidence 345888888888888888888877444 4445566777777766 4555555666555554 334455567888888
Q ss_pred hcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCC------------------------CChhhHHH
Q 005642 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD------------------------TSSVMWNS 207 (686)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~ 207 (686)
+.+++.+-++++. .||+.-...+.+-|...|.++.|.-+|..+.. .++.+|-.
T Consensus 128 k~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 128 KTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp TSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred hhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 8888765433322 36666667777778888888888777765431 35778999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 005642 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287 (686)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 287 (686)
+-.+|...+.+.-|.-.--.++- .||. ...++..|...|.+++-..+++.-+... ......++.|.-.|+|- +
T Consensus 205 V~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~ 277 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-K 277 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-C
T ss_pred HHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-C
Confidence 99999999988877655444442 2222 2346677888899998888888776432 45677888888888876 4
Q ss_pred hhHHHHHHHhcc----cC-------CchhHHHHHHHHHhCCCHHHHHHH
Q 005642 288 PSDACKLFSELK----VY-------DTILLNTMITVYSSCGRIEDAKHI 325 (686)
Q Consensus 288 ~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~~ 325 (686)
+++-.+.++-.- -| ....|.-++-.|.+-.+++.|...
T Consensus 278 PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 278 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 555555544332 11 455788888888888888877543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00052 Score=53.81 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=37.7
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 005642 480 VDLFARAGCLNEAVNLIEQM-PFEA-DVG-MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542 (686)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 542 (686)
+..+.+.|++++|...|++. ...| +.. .|..+..++...|++++|+..++++++.+|++..++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455566666666666655 2233 344 566666666666666777766776666666665544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0006 Score=69.65 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHc-----cCCC---CchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIE-----LDPE---NACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.+++.+..+|...|++++|+.+++++++ +.|+ ....++.|+.+|..+|++++|..++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3455666666666666666666666655 2233 334456666666666666666666665543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0017 Score=50.72 Aligned_cols=59 Identities=17% Similarity=0.323 Sum_probs=54.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCch-hHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 511 ILRGCVAHGDKGLGRKVAERMIELDPENAC-AYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 511 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
....+...|++++|+..++++++..|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456778899999999999999999999999 99999999999999999999999888754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0027 Score=64.92 Aligned_cols=85 Identities=6% Similarity=0.094 Sum_probs=53.8
Q ss_pred HHhcCChHHHHHHHHhCC------CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHc-----cCCC---CchhHHH
Q 005642 483 FARAGCLNEAVNLIEQMP------FEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIE-----LDPE---NACAYIQ 544 (686)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~------~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~p~---~~~~~~~ 544 (686)
+.+.|++++|..++++.- +.|+ ..+++.+...|...|++++|+.+++++++ ..|+ ....+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445666666666665540 2222 34566777777777777777777777766 2333 3345667
Q ss_pred HHHHHhhcCCcchHHHHHHHHHh
Q 005642 545 LSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 545 l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
|+.+|..+|++++|..++++..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777777777777777776654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0051 Score=62.78 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=74.6
Q ss_pred ccCCHHHHHHHHHHHHHh--cCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 005642 449 HCGLVKEGQKWFDAMKWQ--YHIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQM---------PFEAD-VGMWSSIL 512 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~--~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~li 512 (686)
..|++++|+.++++..+. .-+.|+ ..+++.|..+|...|++++|..++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999887642 123332 568899999999999999999999887 13444 45599999
Q ss_pred HHHHhcCChhHHHHHHHHHHc-----cCCCCchhH
Q 005642 513 RGCVAHGDKGLGRKVAERMIE-----LDPENACAY 542 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~ 542 (686)
..|..+|++++|+.+++++++ +.|+++.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999998 568776543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0018 Score=50.94 Aligned_cols=65 Identities=11% Similarity=0.049 Sum_probs=39.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
+...+..++.+|.+.|++++|+..|++. ...| +...|..+..++...|++++|+..+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4555666666666666666666666655 2333 345566666666666666666666666666544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.015 Score=48.69 Aligned_cols=111 Identities=13% Similarity=-0.026 Sum_probs=64.1
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh----cCChhHH
Q 005642 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK----RGMPSDA 291 (686)
Q Consensus 216 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A 291 (686)
+++++|++.|++..+.| .|+.. +...+...+.+++|.+.+++..+.| +......|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666676666665 23332 4444445555666666666666654 44555556666655 5566666
Q ss_pred HHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHh----CCChhhHHHHHHHHHHCC
Q 005642 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLD 364 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 364 (686)
...|++..+ ..++.++..+...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~------------------------------~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACG------------------------------LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHH------------------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHc------------------------------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666553321 1344556666666666 667777777777776654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0075 Score=58.99 Aligned_cols=67 Identities=9% Similarity=0.064 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 502 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
..+...|..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.+++.....
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 34677888887777778999999999999999998 46678889999999999999999999887754
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.025 Score=55.31 Aligned_cols=75 Identities=11% Similarity=-0.022 Sum_probs=62.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 005642 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545 (686)
Q Consensus 470 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 545 (686)
+.++.+|..+.-.+...|++++|...++++ ...|+...|..+...+.-.|+.++|...+++++.++|..+ +|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHH
Confidence 347888888888888889999999999988 3568888888888889999999999999999999999653 44433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.012 Score=60.08 Aligned_cols=100 Identities=10% Similarity=-0.056 Sum_probs=78.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHH
Q 005642 444 LSACDHCGLVKEGQKWFDAMKWQY--HIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQM---------PFEAD-VGM 507 (686)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 507 (686)
+..+.+.|++++|++++++..+.. -+.|+ ..+++.++.+|...|++++|..++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667899999999999887321 13332 567899999999999999999999876 13344 455
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHc-----cCCCCchhHH
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIE-----LDPENACAYI 543 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 543 (686)
++.+...|...|++++|+.+++++++ +.|+++.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 89999999999999999999999998 5787765443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0013 Score=65.47 Aligned_cols=207 Identities=13% Similarity=0.142 Sum_probs=146.9
Q ss_pred chhHHHHHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCCChhhHHHHHHHH
Q 005642 3 TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82 (686)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 82 (686)
.+|+.|..++.++.+.+..++...+..-..+.. .++. +=+.|+-+|++.+++.+-..++. .||..--..+.+-|
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~-IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESY-VETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRC 154 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTT-TTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccc-cHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHH
Confidence 467788899999999999998888887666653 3444 56899999999999877554432 36666667888888
Q ss_pred HhcCCHHHHHHHHhhCCC------------------------CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCC
Q 005642 83 MKLGHKEKSLQLFNVMPQ------------------------KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138 (686)
Q Consensus 83 ~~~g~~~~A~~~~~~m~~------------------------~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~ 138 (686)
...|.++.|.-+|..+.. .+..||-.+-.+|... +.++.|...--.++-.
T Consensus 155 f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~--~EfrLAqicGLniIvh---- 228 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG--KEFRLAQMCGLHIVVH---- 228 (624)
T ss_dssp HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHS--CTTTTTTHHHHHHHCC----
T ss_pred HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCc--hHHHHHHHhcchhccc----
Confidence 899999999888887742 3567999999999987 5566665554444332
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhh----cCCC-------Chhh
Q 005642 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDR----TTDT-------SSVM 204 (686)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~-------~~~~ 204 (686)
+.-...++..|-..|.+++-+.+++.-.. ...-.|+-|.-.|++- +.++-.+-++. +.-| ....
T Consensus 229 -adeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahL 306 (624)
T 3lvg_A 229 -ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 306 (624)
T ss_dssp -SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTC
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 22233466678888999998888887663 4555677766666654 44444444442 2112 3557
Q ss_pred HHHHHHHHHhcCChhHHHH
Q 005642 205 WNSMISGYISNNEDTEALL 223 (686)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~ 223 (686)
|.-++-.|.+-.+++.|..
T Consensus 307 W~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 307 WAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhcchhHHHHHH
Confidence 9999999999888887754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.21 Score=55.99 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=91.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 005642 144 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223 (686)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 223 (686)
..++..+.+.|..+.|.++.+.- ..-.......|++++|.++.+.+. +...|..+...+.+.++++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 55666677778888887766321 122344567788888888877663 36788888999999999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCc
Q 005642 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303 (686)
Q Consensus 224 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 303 (686)
.|.++.. |..+...+...|+.+...++-+.....|. ++.-..+|.+.|++++|.+++.
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~------- 760 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI------- 760 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH-------
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH-------
Confidence 8887743 33455555556666666655555555441 1223344556677777766554
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHhhCC
Q 005642 304 ILLNTMITVYSSCGRIEDAKHIFRTMP 330 (686)
Q Consensus 304 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 330 (686)
+.+++++|..+-+...
T Consensus 761 -----------~~~~~~~A~~lA~~~~ 776 (814)
T 3mkq_A 761 -----------KSQRFSEAAFLGSTYG 776 (814)
T ss_dssp -----------HTTCHHHHHHHHHHTT
T ss_pred -----------HcCChHHHHHHHHHhC
Confidence 4456666666555543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.034 Score=43.73 Aligned_cols=74 Identities=18% Similarity=0.128 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQMP---------FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYI 543 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 543 (686)
..-...|+..+.+.|+++.|...|+... ..+....+..+..++.+.|+++.|...+++++++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3344455556666666666666655541 1124567888889999999999999999999999998877655
Q ss_pred HHH
Q 005642 544 QLS 546 (686)
Q Consensus 544 ~l~ 546 (686)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.018 Score=53.94 Aligned_cols=88 Identities=11% Similarity=0.103 Sum_probs=68.9
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHccCCCC-chhHHHHHHHHhhc-CCcch
Q 005642 489 LNEAVNLIEQM-PFEAD---VGMWSSILRGCVA-----HGDKGLGRKVAERMIELDPEN-ACAYIQLSSIFATS-GEWEK 557 (686)
Q Consensus 489 ~~~A~~~~~~~-~~~p~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 557 (686)
...|...+++. .+.|+ ...|..+...|.. -|+.++|++.|+++++++|+. ..++..++..++.. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 35666 4567777777777 499999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHhcCCCCCCCc
Q 005642 558 SSLIRDIMREKHVGKLPGC 576 (686)
Q Consensus 558 a~~~~~~~~~~~~~~~~~~ 576 (686)
+.+++++.....+...|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999987665544653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.53 Score=37.96 Aligned_cols=84 Identities=10% Similarity=0.028 Sum_probs=65.1
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHH
Q 005642 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 486 ~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (686)
+|+......-+-.+. .+.......++.+..+|+.+.-..++..++..+|.++.....++.+|.+.|+..+|.+++++.
T Consensus 74 C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 455555555555543 244556667888899999999999999876666668889999999999999999999999999
Q ss_pred HhcCCC
Q 005642 566 REKHVG 571 (686)
Q Consensus 566 ~~~~~~ 571 (686)
.++|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 998875
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.051 Score=41.63 Aligned_cols=67 Identities=10% Similarity=-0.024 Sum_probs=48.8
Q ss_pred CChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 005642 471 PEIEHYSCMVDLFARAGC---LNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 471 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 537 (686)
+++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..++++++..|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 366777777777754444 67788888776 3455 4666777777788888888888888888888887
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.046 Score=45.86 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHHH
Q 005642 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG---CLNEAVNLIEQM-PFE-A--DVGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 453 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~li~~~~~~g~~~~A~ 525 (686)
...+.+.|.+..+ .+ .++..+...+..++.+.+ +.++++.++++. ... | +...+-.+.-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455556665552 23 367888888888888887 566888888876 223 5 3556667778889999999999
Q ss_pred HHHHHHHccCCCCchh
Q 005642 526 KVAERMIELDPENACA 541 (686)
Q Consensus 526 ~~~~~~~~~~p~~~~~ 541 (686)
+.++++++.+|++..+
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999999999987653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.029 Score=47.09 Aligned_cols=67 Identities=13% Similarity=-0.043 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHccC-C-CCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 502 EADVGMWSSILRGCVAHG---DKGLGRKVAERMIELD-P-ENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 502 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.++..+...+..++.+.+ ++++++.+++..++.+ | ++...+..++-+|.+.|+|++|+++++.+.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 468888888999999988 6779999999999988 7 45778999999999999999999999988873
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.25 Score=55.41 Aligned_cols=95 Identities=11% Similarity=-0.017 Sum_probs=42.3
Q ss_pred hcCChHHHHH-HHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005642 152 KCGDFNSANQ-VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230 (686)
Q Consensus 152 ~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 230 (686)
..+++++|.+ ++..++ +......++..+.+.|..++|.++.+. . ..-.......|++++|+++.+.+
T Consensus 611 ~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~-- 678 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDE-- 678 (814)
T ss_dssp HTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTC--
T ss_pred HhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhh--
Confidence 3456666655 443322 011224444555555555555544421 1 01122233445555555543221
Q ss_pred CCCCcCHHHHHHHHHHHHccCChhhHHHHHHH
Q 005642 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262 (686)
Q Consensus 231 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 262 (686)
.+...|..+...+.+.++++.|.+.|..
T Consensus 679 ----~~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 679 ----SAEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp ----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----CcHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2344555555555555555555555544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.22 E-value=4.9 Score=44.56 Aligned_cols=412 Identities=10% Similarity=0.021 Sum_probs=202.6
Q ss_pred hHHHHHHHHHhhccCccchh-hHHHHHHHHhCC-CCCchhhHHHHHHHHHhcCCcHHHHHHhccCCC-CCh-hhHHHHHH
Q 005642 5 IDYLARLLQSCNTHHSIHVG-KQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-RNC-FSWNAMIE 80 (686)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~li~ 80 (686)
++.+..++.+|...-.++.- .++...+...-. .+.+ -|..++..+.+.++.+.+.++|+.+.. .|. ..|..-..
T Consensus 194 ~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~~--dy~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAFd 271 (963)
T 4ady_A 194 VKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNC--DYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFD 271 (963)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSSC--CHHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhCCch--hHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34555556666555544432 233333322111 1112 456778888888999999999998642 233 34443222
Q ss_pred HHHhcCCH---HHHHHHH------hhCCC--CC---cchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCC---ChhHH
Q 005642 81 GFMKLGHK---EKSLQLF------NVMPQ--KN---DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF---DSVLG 143 (686)
Q Consensus 81 ~~~~~g~~---~~A~~~~------~~m~~--~~---~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~---~~~~~ 143 (686)
+.+.++- ++..+-+ +++.+ .+ ...|..++.-.... +.. +.+.+ +..+.+ -..+-
T Consensus 272 -L~~~~~Q~fL~~v~~~l~~~e~~~kL~~ILsg~~~~~Lyl~FL~~~n~~---d~~----~l~~~-K~~ld~r~s~~~~A 342 (963)
T 4ady_A 272 -LVSSASQQLLEILVTELTAQGYDPALLNILSGLPTCDYYNTFLLNNKNI---DIG----LLNKS-KSSLDGKFSLFHTA 342 (963)
T ss_dssp -HHHHSCHHHHHHHHHHHHHTTCCHHHHHHTTSHHHHHHHHHHHHHHCCC---CHH----HHHHH-HHHSCTTSHHHHHH
T ss_pred -HhcccchHHHHHHHHhccccchhHHHHHHhCCCChHHHHHHHHHhcccc---chh----hHHHH-HhhhcchhhHHHHH
Confidence 3332221 1111111 11111 11 12233333222111 111 12222 222221 12344
Q ss_pred HHHHHHHHhcCChHHH-HHHH-hccCC-CChhhHHH-HHHHHHccCCHHHHHHHHhhcCCC----Ch--hhHHHHHHHHH
Q 005642 144 SSLVNLYGKCGDFNSA-NQVL-NMMKE-PDDFCLSA-LISGYANCGKMNDARRVFDRTTDT----SS--VMWNSMISGYI 213 (686)
Q Consensus 144 ~~l~~~~~~~g~~~~A-~~~~-~~~~~-~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~ 213 (686)
.++.+++..+|--.+. .... +++.+ .+..-+.+ .--+....|+.++++.+++..... +. ..-..+.-+.+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli 422 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLI 422 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHh
Confidence 5677888888754433 1111 11111 22122222 234467889999999999876651 22 23334445566
Q ss_pred hcCChhHHHHHHHHHHHCCC-------CcCHHHHHHHHHHHHccCC-hhhHHHHHHHHHHcCCCchH--HHHHHHHHHHH
Q 005642 214 SNNEDTEALLLFHKMRRNGV-------LEDASTLASVLSACSSLGF-LEHGKQVHGHACKVGVIDDV--IVASALLDTYS 283 (686)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~g~-------~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~ 283 (686)
..|..++++.++...+...- .+....-..+.-+.+-.|. -+++...+..++...- +.. ....+|...+.
T Consensus 423 ~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~v 501 (963)
T 4ady_A 423 YAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCML 501 (963)
T ss_dssp TTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence 67776778887777665321 0111112222222333332 2344555555554321 111 12233445556
Q ss_pred hcCChhHHHHHHHhcccC-Cchh--HHHHHHHHHhCCCHHHHHHHHhhCCC-CCch-hHH---HHHHHHHhCCChhhHHH
Q 005642 284 KRGMPSDACKLFSELKVY-DTIL--LNTMITVYSSCGRIEDAKHIFRTMPN-KSLI-SWN---SMIVGLSQNGSPIEALD 355 (686)
Q Consensus 284 ~~g~~~~A~~~~~~~~~~-~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~~ 355 (686)
-.|+.+....++..+.+. +... ...+.-++...|+.+.+..+.+.+.. .++. -|. ++..+|+..|+.....+
T Consensus 502 GTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~ 581 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKR 581 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 667777667776655422 2222 22333445567888777777776653 3432 233 34567778888877777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh---HHHHHHHHHHH
Q 005642 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---DALALFNEMRN 430 (686)
Q Consensus 356 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~A~~~~~~m~~ 430 (686)
+++.+... ...+......+.-++...|+.+.+.++++.+.+.+ .|.+....++.-+....|. ++++++..+..
T Consensus 582 LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 582 LLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 88888764 22233333333334445666666667666555443 4555555555555554444 78888888864
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.06 Score=44.45 Aligned_cols=99 Identities=15% Similarity=0.078 Sum_probs=62.1
Q ss_pred ChhHHHHHHHHHHhcCCh------HHHHHHHHhC--CCCCCH-HHHHHHHHH------HHhcCChhHHHHHHHHHHccCC
Q 005642 472 EIEHYSCMVDLFARAGCL------NEAVNLIEQM--PFEADV-GMWSSILRG------CVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~--~~~p~~-~~~~~li~~------~~~~g~~~~A~~~~~~~~~~~p 536 (686)
|.++|-..++...+.|++ ++..++|++. .++|+. ..|...+.. +...+|+++|.++|+.++++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 455555555555555555 5555555554 133321 112222221 1234788888999988887766
Q ss_pred CCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 537 ENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
.-+.+|...+.--.++|+.+.|++++......+.
T Consensus 92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 5667777777777888999999999887776543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.96 Score=38.89 Aligned_cols=99 Identities=10% Similarity=0.156 Sum_probs=48.6
Q ss_pred HHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHH
Q 005642 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260 (686)
Q Consensus 181 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 260 (686)
..+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|++... +..+.-.|.-.|+.+.-.++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34455555555554443 2345666666666666666666666665432 233333444445555544444
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHH
Q 005642 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296 (686)
Q Consensus 261 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 296 (686)
+.....|- ++.-...+.-.|+++++.++|.
T Consensus 84 ~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 84 NIAQTRED------FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHCcc------HHHHHHHHHHcCCHHHHHHHHH
Confidence 43333331 1222333444555555555554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=2.9 Score=44.47 Aligned_cols=307 Identities=8% Similarity=-0.025 Sum_probs=154.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC-CCchHHHHHHHHHHHHhcCChhH
Q 005642 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSD 290 (686)
Q Consensus 212 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~ 290 (686)
..+.|++..+..+...+...-+ .....|..+.... .....+ ++-..+.+.. .+.....-...+..+.+.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL-~~yl~y~~l~~~l-~~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPL-YPYLEYRQITDDL-MNQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTT-HHHHHHHHHHHTG-GGCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCc-HHHHHHHHHHhCc-ccCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHH
Confidence 4467888877777666533212 1122343333222 112333 3434444432 22233444666777778888888
Q ss_pred HHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhC---CCCCchhHHHHHHHHHhCCChhhH--HHHHHHHHHCCC
Q 005642 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM---PNKSLISWNSMIVGLSQNGSPIEA--LDLFCNMNKLDL 365 (686)
Q Consensus 291 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A--~~~~~~m~~~g~ 365 (686)
....+.. .+.+...-.....+....|+..+|......+ ....+..+..++..+.+.|..... ..=++.+...|
T Consensus 91 ~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~- 168 (618)
T 1qsa_A 91 LLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG- 168 (618)
T ss_dssp HHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-
T ss_pred HHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-
Confidence 8886665 4445555556777788888876666554443 223567788888888877766543 23333333332
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh---------CCCcchhHHHHH---HHHHHhch-hHHHHHHHHHHHCC
Q 005642 366 RMDKFSLASVISACANISSLELGEQVFARVTII---------GLDSDQIISTSL---VDFYCKCG-YDALALFNEMRNTG 432 (686)
Q Consensus 366 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l---i~~~~~~~-~~A~~~~~~m~~~~ 432 (686)
+......++... ..+.-..+.. +..+.+. ...++...-..+ +.-+.+.. +.|...+....+..
T Consensus 169 --~~~~a~~l~~~l-~~~~~~~a~~-~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~ 244 (618)
T 1qsa_A 169 --NTGLVTVLAGQM-PADYQTIASA-IISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ 244 (618)
T ss_dssp --CHHHHHHHHHTC-CGGGHHHHHH-HHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHhC-CHHHHHHHHH-HHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhcc
Confidence 122222222111 1111111111 1111111 011111111111 22222222 27777777776433
Q ss_pred CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC--CHH
Q 005642 433 VKPTII----TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA--DVG 506 (686)
Q Consensus 433 ~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~ 506 (686)
. .+.. .+..+.......+...++...+..... ..++.....-.+..-.+.|+++.|...|+.+...+ ...
T Consensus 245 ~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r 320 (618)
T 1qsa_A 245 Q-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDE 320 (618)
T ss_dssp T-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHH
T ss_pred C-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHh
Confidence 2 2322 222333334444534555666665441 22343344445555557788888888888885332 233
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
..--+..++...|+.++|...++++.+
T Consensus 321 ~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 321 WRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 333455667778888888888888874
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.13 Score=40.24 Aligned_cols=65 Identities=12% Similarity=0.012 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC-------CCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELD-------PENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 504 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
+..-+..+...+...|+++.|...++++++.. +..+.++..++.++.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45556678889999999999999999998842 335677999999999999999999999988764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.74 E-value=1.4 Score=37.79 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=51.5
Q ss_pred HHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHH
Q 005642 282 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361 (686)
Q Consensus 282 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (686)
....|+++.|.++.+++ .+...|..|.......|+++-|++.|.+..+ +..+.-.|.-.|+.++-..+-+...
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~iA~ 87 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNIAQ 87 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555555555443 3344556666666666666666666665543 3334444445555555444444433
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 005642 362 KLDLRMDKFSLASVISACANISSLELGEQVFA 393 (686)
Q Consensus 362 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 393 (686)
..| -++....++.-.|+++++.++|.
T Consensus 88 ~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 88 TRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 332 13344444555666666666664
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.67 Score=37.27 Aligned_cols=89 Identities=12% Similarity=0.014 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCChhHHH
Q 005642 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE---AVNLIEQMP-FE-A--DVGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 453 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~li~~~~~~g~~~~A~ 525 (686)
...+.+-|.+... .+. |+..+-..+..++.+.....+ ++.+++++- .. | .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~-~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHH-HSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344555555442 232 677777778888888777666 777777763 22 4 2344556677788999999999
Q ss_pred HHHHHHHccCCCCchhHH
Q 005642 526 KVAERMIELDPENACAYI 543 (686)
Q Consensus 526 ~~~~~~~~~~p~~~~~~~ 543 (686)
+.++.+++.+|++..+..
T Consensus 95 ~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHH
Confidence 999999999998866443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.25 Score=53.59 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=49.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHH
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (686)
.+-|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.+.-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445778899999999999999999999999999999999999999999888754
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.09 E-value=1.3 Score=35.79 Aligned_cols=136 Identities=14% Similarity=0.060 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC-CChhhHHHHHHHHHccCCHHHHHHHHhhc
Q 005642 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALISGYANCGKMNDARRVFDRT 197 (686)
Q Consensus 119 ~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 197 (686)
|..+++.++.....+.. +..-||=++.-....-+-+...++++.+.+ -|. ..+|++......+-.+
T Consensus 21 G~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C~NlKrVi~C~~~~ 87 (172)
T 1wy6_A 21 GYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECGVIN 87 (172)
T ss_dssp TCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------HhhhcHHHHHHHHHHh
Confidence 55666666665555432 333444444444444444455555554442 111 1344444444444443
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC
Q 005642 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269 (686)
Q Consensus 198 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 269 (686)
.. +....+.-+..+..+|+-+.-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++.+.|++
T Consensus 88 n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 88 NT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp TC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred cc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33 234566677888889999998888888644 35788888888999999999999999999999998864
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.21 Score=46.80 Aligned_cols=105 Identities=10% Similarity=0.174 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHh-----cCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCC
Q 005642 453 VKEGQKWFDAMKWQYHIDPE---IEHYSCMVDLFAR-----AGCLNEAVNLIEQM-PFEAD--VGMWSSILRGCVA-HGD 520 (686)
Q Consensus 453 ~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~li~~~~~-~g~ 520 (686)
...|...+++.. .+.|+ ...|..++..|.+ -|+.++|.+.|++. .+.|+ ..++....+.++. .|+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 455666666665 46675 5678888888888 48999999999887 46663 6777777787777 488
Q ss_pred hhHHHHHHHHHHccCCCC-chhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 521 KGLGRKVAERMIELDPEN-ACAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 521 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
.++|.+.+++++...|.. +. ..+. ..++-++|..++.++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~--~~la----n~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH--NKLL----VILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS--CHHH----HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC--hhHH----HHHHHHHHHHHHHHhH
Confidence 999999999999877753 22 2233 3334455666555443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.36 E-value=7.9 Score=36.89 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=44.2
Q ss_pred CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhC---CChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005642 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN---GSPIEALDLFCNMNKLDLRMDKFSLASVISA 378 (686)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 378 (686)
|+..+..+...|.+.|++.+|+..|-.....++..+..++.-+... |...++--..-+ .++ -
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------aVL-~ 197 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------LVF-N 197 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------HHH-H
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------HHH-H
Confidence 5556666677777777777777766633333455666555554443 443332211111 122 3
Q ss_pred HHccCChHHHHHHHHHHH
Q 005642 379 CANISSLELGEQVFARVT 396 (686)
Q Consensus 379 ~~~~~~~~~a~~~~~~~~ 396 (686)
+.-.+++..|...+....
T Consensus 198 yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 445677777777777544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.91 Score=49.24 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=47.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005642 444 LSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP 500 (686)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (686)
...|...|+++.|+++-++.+ ...| +..+|..|..+|.+.|+++.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345667899999999999988 3556 68999999999999999999999999885
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.86 E-value=0.41 Score=38.48 Aligned_cols=80 Identities=11% Similarity=-0.092 Sum_probs=60.2
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHccC-C-CCchhHHHHHHHHhhcCCcchHHHH
Q 005642 489 LNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGL---GRKVAERMIELD-P-ENACAYIQLSSIFATSGEWEKSSLI 561 (686)
Q Consensus 489 ~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (686)
...+.+.|.+.. -.|+..+-..+..++.+..+... ++.+++.+.... | ..-.....++-++.+.|+|++|+++
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444444331 24777887778888888877655 889999888876 5 3556788899999999999999999
Q ss_pred HHHHHhc
Q 005642 562 RDIMREK 568 (686)
Q Consensus 562 ~~~~~~~ 568 (686)
++.+.+.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988873
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.60 E-value=12 Score=35.80 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=36.7
Q ss_pred HHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHH----HHHHHCCCCcCHHHHHHHHHHHHcc
Q 005642 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF----HKMRRNGVLEDASTLASVLSACSSL 250 (686)
Q Consensus 175 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~ 250 (686)
.++..=|.+.+++++|++++.. -...+.+.|+...|.++- +-..+.++++|......++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3444456666777777665432 233445556665554443 4444566777777666666666543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.49 E-value=12 Score=35.56 Aligned_cols=166 Identities=10% Similarity=0.020 Sum_probs=102.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCcCHHHHHHHHHHHHc
Q 005642 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL----FHKMRRNGVLEDASTLASVLSACSS 249 (686)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~ 249 (686)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34455566777777777776543 23445567777666554 4555567888898888888887765
Q ss_pred cCChh-hHHHHHHHH----HHcC--CCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhC---CCH
Q 005642 250 LGFLE-HGKQVHGHA----CKVG--VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC---GRI 319 (686)
Q Consensus 250 ~~~~~-~a~~~~~~~----~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 319 (686)
...-+ .-.++...+ .+.| ...++.....+...|.+.|++.+|...|---...|...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 43211 123333333 3333 2347888899999999999999999988633333455565555544443 433
Q ss_pred HHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHH
Q 005642 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361 (686)
Q Consensus 320 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (686)
.++--. ....+-.|.-.++...|..+|+...
T Consensus 185 ~e~dlf-----------~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 185 STVAEF-----------FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHH-----------HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred chHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 332111 1223344556788888888887765
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.91 E-value=14 Score=35.40 Aligned_cols=177 Identities=13% Similarity=0.048 Sum_probs=106.0
Q ss_pred HHHHccCCH---HHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhh
Q 005642 179 SGYANCGKM---NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255 (686)
Q Consensus 179 ~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 255 (686)
......|++ =+|.+ .|.++..-|.+.+++++|++++..--. .+.+.|+...
T Consensus 20 ~~~I~~G~y~~~YEAHQ-----------~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~s 73 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQ-----------ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGS 73 (336)
T ss_dssp HHHHHHCCHHHHHHHHH-----------HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHH
T ss_pred HHHHhCCCCccccHHHH-----------HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcch
Confidence 334556777 55554 456677788999999999998754321 2233344443
Q ss_pred HH----HHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHH-HHHHHhcc----------cCCchhHHHHHHHHHhCCCHH
Q 005642 256 GK----QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA-CKLFSELK----------VYDTILLNTMITVYSSCGRIE 320 (686)
Q Consensus 256 a~----~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~ 320 (686)
|. -+.+-..+.+.++|......++..+.....-+-. .++.+++. ..|+.....+...|.+.+++.
T Consensus 74 g~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 74 GGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHH
Confidence 33 3345556677788887777777777766542211 12222222 236777888889999999999
Q ss_pred HHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 005642 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396 (686)
Q Consensus 321 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 396 (686)
+|+..|-.-.++++..+..++.-+...+...++--.+- ..++ -|.-.+++..|...+....
T Consensus 154 ~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfia--------------RaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 154 AAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCA--------------RAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHH--------------HHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHH--------------HHHH-HHHHhCCHHHHHHHHHHHH
Confidence 99998864333334677666665555444333322221 1222 3455677777777666544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.27 E-value=4.4 Score=30.55 Aligned_cols=79 Identities=10% Similarity=0.117 Sum_probs=50.8
Q ss_pred HHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHH
Q 005642 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356 (686)
Q Consensus 277 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 356 (686)
.+.+.+...++ +++..+.+ +..+.+.|++++|..+.+....||...|.++-. .+.|..+++...
T Consensus 28 tIAdwL~~~~~-~E~v~lIR-------------~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 28 CIAEWLHLKGE-EEAVQLIR-------------LSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp HHHHHHHHTTC-HHHHHHHH-------------HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred HHHHHHHhCCc-HHHHHHHH-------------HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHH
Confidence 34445555555 55554444 446777888888888888888888888877644 356777777777
Q ss_pred HHHHHHCCCCCCHHHH
Q 005642 357 FCNMNKLDLRMDKFSL 372 (686)
Q Consensus 357 ~~~m~~~g~~p~~~t~ 372 (686)
+..+..+| .|....|
T Consensus 92 L~~la~sg-~p~~q~F 106 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCC-CHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 76666554 3444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.13 E-value=4.1 Score=30.65 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=53.7
Q ss_pred HHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHH
Q 005642 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356 (686)
Q Consensus 277 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 356 (686)
.+.+.+...++ +++..+.+ +..+.+.|++++|..+.+....||...|.++-. .+.|..+++...
T Consensus 27 tIAdwL~~~~~-~E~v~lIR-------------~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 27 CIAEWLERLGQ-DEAARLIR-------------ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp HHHHHHHHTTC-HHHHHHHH-------------HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred HHHHHHHhCCc-HHHHHHHH-------------HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHH
Confidence 34455555555 55555444 456778888888888888888889888877644 467888888877
Q ss_pred HHHHHHCCCCCCHHHH
Q 005642 357 FCNMNKLDLRMDKFSL 372 (686)
Q Consensus 357 ~~~m~~~g~~p~~~t~ 372 (686)
+..+..+| .|....|
T Consensus 91 L~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTCS-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 77776664 4444444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.65 E-value=4.6 Score=33.07 Aligned_cols=70 Identities=11% Similarity=0.178 Sum_probs=35.6
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 005642 470 DPEIEHYSCMVDLFARAGCLN---EAVNLIEQM-PFEA--DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 470 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 539 (686)
.|+..+-..+..++.+....+ +++.+++++ ...| .....-.+.-++.+.|++++|++..+.+++.+|++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 345555555555555554433 344444444 1222 122333344455566666666666666666666553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.96 E-value=37 Score=37.73 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhcCCcHHHHHHhccCC
Q 005642 43 IANRLLQMYMRCGNPTDALLLFDEMP 68 (686)
Q Consensus 43 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 68 (686)
+...++..+.+.|.+.+|..+.=+..
T Consensus 147 Lv~~iv~~cl~hnae~~AvdLalE~e 172 (963)
T 4ady_A 147 IFERMIEKCLKASELKLALGIALEGY 172 (963)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 44555555666666666655554443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.18 E-value=2 Score=34.67 Aligned_cols=70 Identities=10% Similarity=0.150 Sum_probs=33.7
Q ss_pred CChhHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 471 PEIEHYSCMVDLFARAGCL---NEAVNLIEQM-PFEA--DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
|+..+-..+..++.+.... .+++.+++++ +..| ....+-.+.-++.+.|++++|.+..+.+++.+|++..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 4445545555555554433 2344444443 1223 1333444444555555666666666666655555533
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=85.43 E-value=15 Score=30.50 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=18.2
Q ss_pred CCchhHHHHHHHHHhCCCh------hhHHHHHHHHHHC
Q 005642 332 KSLISWNSMIVGLSQNGSP------IEALDLFCNMNKL 363 (686)
Q Consensus 332 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~ 363 (686)
.|..+|-..+...-+.|++ ++.+++|++....
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~ 48 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA 48 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc
Confidence 3556666666666555666 5555555555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.37 E-value=20 Score=36.34 Aligned_cols=92 Identities=9% Similarity=0.064 Sum_probs=43.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHh-cCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHHH
Q 005642 442 AILSACDHCGLVKEGQKWFDAMKWQ-YHIDPE---IEHYSCMVDLFARAGCLNEAVNLIEQMP-----FEAD----VGMW 508 (686)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~ 508 (686)
.|...+...|++.+|..++..+..+ .+..+. .+.+...++.|...+++..|..+++++. ..++ ...+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 3444555556666666666555322 121111 3345555555555666666655555541 1111 1223
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 509 SSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
...+..+...+++.+|-+.|.++.+
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444555555555555544443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.17 E-value=2.1 Score=42.76 Aligned_cols=61 Identities=11% Similarity=0.005 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
....++..+...|+.++|...+.+++..+|-+...|..++.+|...|+..+|.+.|+...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455777888999999999999999999999999999999999999999999998887654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.12 E-value=6 Score=31.93 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCC-CchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 503 ADVGMWSSILRGCVAHGD---KGLGRKVAERMIELDPE-NACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 503 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
|+..+-..+..++.+..+ ..+++.+++.+....|. ....+..++-++.+.|+|++|+++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344443344444444432 23444555555544442 233444455555555555555555554443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.39 E-value=6.1 Score=33.36 Aligned_cols=59 Identities=12% Similarity=0.013 Sum_probs=39.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-------IEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
..-+..+...|.++.|+-+.+.+....+.+|+ ..++..+++++...|++..|...|++.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33345566677777777777765433233333 236677888888888888888888774
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=84.02 E-value=22 Score=31.36 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=11.2
Q ss_pred HhccCCCCChhhHHHHHHHHHhcCC
Q 005642 63 LFDEMPRRNCFSWNAMIEGFMKLGH 87 (686)
Q Consensus 63 ~~~~~~~~~~~~~~~li~~~~~~g~ 87 (686)
+++.+..++...-...+..+.+.|.
T Consensus 24 L~~~L~~~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 24 YIKNLQDDSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 3333334444444444444444444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.75 E-value=17 Score=29.80 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCC-CchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 502 EADVGMWSSILRGCVAHGD---KGLGRKVAERMIELDPE-NACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 502 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.|+..+-..+..++.+..+ ..+++.+++.+....|. .-.....++-++.+.|+|++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4667666667777776664 45677788888877774 4455677778888888888888888877763
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.24 E-value=11 Score=43.61 Aligned_cols=160 Identities=10% Similarity=0.051 Sum_probs=72.8
Q ss_pred HHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhH
Q 005642 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256 (686)
Q Consensus 177 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 256 (686)
++..+.+.+..+.+.++..... .++...-.+..+|...|++++|.+.|++.- .|+..+.... .....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~----------~~~~~- 884 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF----------AVLRE- 884 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------SSHHH-
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------hhhcc-
Confidence 4444555666666655544333 333444456666777777777777776542 1121110000 00000
Q ss_pred HHHHHHHHHcC--CCchHHHHHHHHHHHHhcCChhHHHHHHHhcc----cCCc----hhHHHHHHHHHhCCCHHHHHHHH
Q 005642 257 KQVHGHACKVG--VIDDVIVASALLDTYSKRGMPSDACKLFSELK----VYDT----ILLNTMITVYSSCGRIEDAKHIF 326 (686)
Q Consensus 257 ~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~~ 326 (686)
+..+.... ...-...|..++..+.+.+.++.+.++-.... +.+. ..|..+.+.+...|++++|...+
T Consensus 885 ---~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 885 ---FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp ---HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred ---cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 00000000 01112334455555555555555554433222 1111 13555666666666666666666
Q ss_pred hhCCCCC--chhHHHHHHHHHhCCChhh
Q 005642 327 RTMPNKS--LISWNSMIVGLSQNGSPIE 352 (686)
Q Consensus 327 ~~~~~~~--~~~~~~li~~~~~~g~~~~ 352 (686)
-.++... ......++..++..|+.+.
T Consensus 962 ~~~pd~~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 962 MVLSTTPLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHCCHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHhCCChhh
Confidence 5554322 2345556666666555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.16 E-value=6.2 Score=29.93 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005642 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481 (686)
Q Consensus 420 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 481 (686)
+..+-+..+......|++....+.+.+|.+.+++..|.++|+..+.+.+. ...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 45555666666778899999999999999999999999999988755443 3556766654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=81.33 E-value=59 Score=34.44 Aligned_cols=135 Identities=7% Similarity=-0.017 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 420 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
++...+....... ++.....-.+....+.|+++.|...|+.|.. .......-.--+..++...|+.++|..+|+.+
T Consensus 270 ~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~--~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 270 EQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPM--EAKEKDEWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp HHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT--TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccc--cccccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555566544332 2333333344444567999999999998862 11123445566778889999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc-----hhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA-----CAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 500 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.... +|-.++.+ .+.|..-.. ......+... ..-...+..+...|....|...+..+.+
T Consensus 346 a~~~---~fYg~lAa-~~Lg~~~~~-----~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 346 MQQR---GFYPMVAA-QRIGEEYEL-----KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HTSC---SHHHHHHH-HHTTCCCCC-----CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCC---ChHHHHHH-HHcCCCCCC-----CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 5322 33223222 233321100 0001111111 1123445667788999999888777664
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.30 E-value=14 Score=31.08 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=10.4
Q ss_pred HHHHHHhcCChhHHHHHHHhc
Q 005642 278 LLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 278 l~~~~~~~g~~~~A~~~~~~~ 298 (686)
+..+|.+.+++++|+.+++.+
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHCCHHHHHHHHhcC
Confidence 444555555555555555444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 686 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.51 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.12 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.11 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.0 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.92 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.86 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.85 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.84 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.8 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.8 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.74 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.59 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.45 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.44 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.43 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.4 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.38 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.35 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.3 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.28 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.24 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.09 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.07 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.05 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.97 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.94 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.92 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.92 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.9 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.87 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.84 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.83 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.79 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.75 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.71 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.7 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.63 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.6 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.56 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.52 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.51 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.46 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.17 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.03 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.0 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.9 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.81 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.77 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.49 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.12 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.81 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.33 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.31 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.12 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 85.7 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.1e-20 Score=192.43 Aligned_cols=370 Identities=14% Similarity=0.103 Sum_probs=253.1
Q ss_pred HHHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChh
Q 005642 146 LVNLYGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDT 219 (686)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 219 (686)
+...+.+.|++++|++.++++.+ | +...+..+...|.+.|++++|...|++..+ .+..+|..+...|.+.|+++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 34455666777777777777653 3 344566666667777777777777776543 34567777777777778888
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 220 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
+|+..+....+.. +.+..............+................. ................+....+...+....
T Consensus 85 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhh
Confidence 8877777776642 33334444444444445555555555544444432 233333444555556666666666665544
Q ss_pred ---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 005642 300 ---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373 (686)
Q Consensus 300 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 373 (686)
+.+...+..+...+...|++++|...+++..+ .++.+|..+...+...|++++|+..+++....+ +.+...+.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 22345566666666777777777776665543 234566667777777777777777777766542 33445555
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 005642 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453 (686)
Q Consensus 374 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 453 (686)
.+...+.+.|++++|...|+.+++.. +-+..++..+...+...|++
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~l~~~~~~~~~~ 287 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQ----------------------------------PHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC----------------------------------SSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHHcCCH
Confidence 66666667777777766666655432 12567788888889999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 005642 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERM 531 (686)
Q Consensus 454 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 531 (686)
++|.+.++.... ..+.+...+..+..++.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++
T Consensus 288 ~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 365 (388)
T d1w3ba_ 288 AEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998873 23447788889999999999999999999886 4566 4677888999999999999999999999
Q ss_pred HccCCCCchhHHHHHHHHhhcCC
Q 005642 532 IELDPENACAYIQLSSIFATSGE 554 (686)
Q Consensus 532 ~~~~p~~~~~~~~l~~~~~~~g~ 554 (686)
++++|+++.+|..++.+|.+.||
T Consensus 366 l~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 366 IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.5e-19 Score=182.22 Aligned_cols=354 Identities=10% Similarity=0.020 Sum_probs=221.5
Q ss_pred HHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhh
Q 005642 179 SGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255 (686)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 255 (686)
..+.+.|++++|.+.|+++.+ .++.++..+...|.+.|++++|+..|++.++.. +-+..++..+..++.+.|++++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 344555666666666655432 234555556666666666666666666655531 2234455555555666666666
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCch
Q 005642 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 335 (686)
Q Consensus 256 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 335 (686)
|...+....+.... +..............+....+........ ........
T Consensus 86 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~ 136 (388)
T d1w3ba_ 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSAL----------------------------QYNPDLYC 136 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHH----------------------------HHCTTCTH
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccc----------------------------cccccccc
Confidence 66666655554322 22223333333333333333333332221 00112222
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 005642 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415 (686)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 415 (686)
............+....+...+...... .+-+...+..+...+...|+++.|...+...++.. +.+...+..+...+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 214 (388)
T d1w3ba_ 137 VRSDLGNLLKALGRLEEAKACYLKAIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHhhcc-CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhh
Confidence 3333333444444444444444444432 12223344444444555555555555555554432 223344444555555
Q ss_pred hchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHH
Q 005642 416 KCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEA 492 (686)
Q Consensus 416 ~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 492 (686)
..|+ +|...+.+....+ +.+...+..+...+.+.|++++|.+.|+++.+ +.| +..++..++.++...|++++|
T Consensus 215 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A 290 (388)
T d1w3ba_ 215 EARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5544 5555555555443 23567788888899999999999999999883 456 678999999999999999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 493 VNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 493 ~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.+.++... .+.+...+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999873 44567888999999999999999999999999999999999999999999999999999999988764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=4.6e-13 Score=131.72 Aligned_cols=244 Identities=12% Similarity=0.035 Sum_probs=179.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 005642 306 LNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382 (686)
Q Consensus 306 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 382 (686)
.-.....+.+.|++++|...|+++.+. ++.+|..+..++...|++++|...|.+..+.. +-+...+..+..++...
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 345667788888899988888887552 44678888888888888888888888887752 23456677777888888
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 005642 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462 (686)
Q Consensus 383 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 462 (686)
|++++|.+.+..+........ .......... ...+.......+..+...+..++|.+.+.+
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYA-HLVTPAEEGA------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTG-GGCC---------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchH-HHHHhhhhhh------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 888888888888776532211 0000000000 000111111222234455677888899888
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 463 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
..+...-.++..++..++..+...|++++|...|++. ...| +...|..+...+...|++++|+..++++++.+|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 8744333346788889999999999999999999987 3445 5778999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 541 AYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
+|..++.+|.+.|++++|++.+++..+..
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 270 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQ 270 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999888743
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=5.6e-13 Score=131.11 Aligned_cols=251 Identities=10% Similarity=0.028 Sum_probs=162.8
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHH
Q 005642 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322 (686)
Q Consensus 243 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 322 (686)
....+.+.|++++|...|+.+++.. |.+...|..+..+|...|++++|...|.+...
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---------------------- 81 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLE---------------------- 81 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc----------------------
Confidence 3444556677777777777766653 23455666666666666666666666664431
Q ss_pred HHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHH----------------HHHHHHccCChH
Q 005642 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS----------------VISACANISSLE 386 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----------------ll~~~~~~~~~~ 386 (686)
+...+...|..++..|...|++++|.+.+++.... .|+...... .+..+...+.+.
T Consensus 82 ------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (323)
T d1fcha_ 82 ------LKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 153 (323)
T ss_dssp ------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHH
T ss_pred ------cccccccccccccccccccccccccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHH
Confidence 01123345555556666666666666666665543 222111000 000111111222
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005642 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTG-VKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465 (686)
Q Consensus 387 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (686)
+|...|.+..+.. -.++..++..+...+...|++++|+..+++...
T Consensus 154 ---------------------------------~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 200 (323)
T d1fcha_ 154 ---------------------------------EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 200 (323)
T ss_dssp ---------------------------------HHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccc
Confidence 4445555544332 234667888888899999999999999999883
Q ss_pred hcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh-
Q 005642 466 QYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA- 541 (686)
Q Consensus 466 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~- 541 (686)
..| +...|..++.+|.+.|++++|.+.|++. ...| +...|..+..+|...|++++|+..+++++++.|++...
T Consensus 201 ---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 277 (323)
T d1fcha_ 201 ---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 277 (323)
T ss_dssp ---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred ---cccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence 345 6888999999999999999999999987 4555 57789999999999999999999999999988876553
Q ss_pred ----------HHHHHHHHhhcCCcchHHH
Q 005642 542 ----------YIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 542 ----------~~~l~~~~~~~g~~~~a~~ 560 (686)
|..+..++...|+.+.+..
T Consensus 278 ~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 278 GEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp --CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445556666666655544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=2.8e-08 Score=97.87 Aligned_cols=270 Identities=12% Similarity=0.032 Sum_probs=163.1
Q ss_pred HHHccCChhhHHHHHHHHHHcCCCch----HHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHH
Q 005642 246 ACSSLGFLEHGKQVHGHACKVGVIDD----VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321 (686)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 321 (686)
.+...|++++|.+++++.++.....+ ...+..+..+|...|++++|...|++..
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~---------------------- 78 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE---------------------- 78 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------------
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------------
Confidence 34455566666666655555321111 2344556666677777777777666432
Q ss_pred HHHHHhhCCCC--CchhHHHHHHHHHhCCChhhHHHHHHHHHH----CCCCCC---HHHHHHHHHHHHccCChHHHHHHH
Q 005642 322 AKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNK----LDLRMD---KFSLASVISACANISSLELGEQVF 392 (686)
Q Consensus 322 A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~ 392 (686)
++....... ...++..+...+...|++..+...+.+... .+..+. ...+..+...+...|+++.+...+
T Consensus 79 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~ 156 (366)
T d1hz4a_ 79 --QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 156 (366)
T ss_dssp --HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 111111110 112344455566666777766666665442 111111 123445556667778888877777
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-
Q 005642 393 ARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP- 471 (686)
Q Consensus 393 ~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p- 471 (686)
....+..... +......++......+...++...+...+.+.........
T Consensus 157 ~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 207 (366)
T d1hz4a_ 157 RSGIEVLSSY-----------------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 207 (366)
T ss_dssp HHHHHHTTTS-----------------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHhhhh-----------------------------hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 7665543221 1112234445555566677778777777776543222111
Q ss_pred ----ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHc------cC
Q 005642 472 ----EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-----DVGMWSSILRGCVAHGDKGLGRKVAERMIE------LD 535 (686)
Q Consensus 472 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~ 535 (686)
....+..+...+...|++++|...+++.. ..| ....+..+...+...|++++|...+++++. ..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 287 (366)
T d1hz4a_ 208 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM 287 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccC
Confidence 13456667778888999999999988872 221 244566778888999999999999988875 34
Q ss_pred CCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 536 PENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 536 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
|....++..++.+|...|++++|.+.+++..+.
T Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 288 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 555677888999999999999999999877653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=4.6e-08 Score=96.22 Aligned_cols=302 Identities=10% Similarity=-0.043 Sum_probs=195.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHHccCChhhHHHHHHHHHHcC----CC-chHHH
Q 005642 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLED-----ASTLASVLSACSSLGFLEHGKQVHGHACKVG----VI-DDVIV 274 (686)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~-~~~~~ 274 (686)
.......+...|++++|++++++.++.. +.+ ..++..+..++...|++++|...++...+.. .. .....
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 3334566778889999999988887742 222 2355666777888899999998888876632 11 12234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc----hhHHHHHHHHHhCCCh
Q 005642 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSP 350 (686)
Q Consensus 275 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~ 350 (686)
+..+...+...|++..+...+.+ +..+......+.. ..+..+...+...|++
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~------------------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 149 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEK------------------------AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 149 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHhHhcccchhhHHHHHHHHHHHHHHHhcch
Confidence 56677788888888888887763 3333333332211 2455566778888888
Q ss_pred hhHHHHHHHHHHCCCC----CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHH
Q 005642 351 IEALDLFCNMNKLDLR----MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFN 426 (686)
Q Consensus 351 ~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~ 426 (686)
+.+...+......... ....++......+...++...+...+.........
T Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~------------------------- 204 (366)
T d1hz4a_ 150 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN------------------------- 204 (366)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-------------------------
T ss_pred hhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-------------------------
Confidence 8888888877654222 22344555556667778888777777655432111
Q ss_pred HHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC---
Q 005642 427 EMRNTGVKP--TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP--EIEHYSCMVDLFARAGCLNEAVNLIEQM--- 499 (686)
Q Consensus 427 ~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 499 (686)
.+..+ ....+..+...+...|++++|...++.........+ ....+..+..++...|++++|...+++.
T Consensus 205 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 280 (366)
T d1hz4a_ 205 ----GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 280 (366)
T ss_dssp ----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----hcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 01111 123455566678888999999999988762211111 2445667888999999999999998876
Q ss_pred ----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---------chhHHHHHHHHhhcCCcchHHH
Q 005642 500 ----PFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN---------ACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 500 ----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
...|+ ...+..+...+...|++++|...+++++++.+.. ...+..+...+...++.+++.+
T Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 281 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 23333 4567888889999999999999999998854321 1223344455556666666655
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=8.3e-09 Score=99.73 Aligned_cols=194 Identities=9% Similarity=0.047 Sum_probs=140.4
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK-FSLASVISACANIS-SLELGEQVFARVTIIGLDSDQIISTSLVD 412 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 412 (686)
..++.+...+.+.+.+++|+.+++++++. .|+. ..|+....++...| ++++|...++.+++...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p------------ 109 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP------------ 109 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH------------
Confidence 35667777788888888888888888884 4544 45566666666655 47888888777766531
Q ss_pred HHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHH
Q 005642 413 FYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNE 491 (686)
Q Consensus 413 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 491 (686)
-+..+|..+...+.+.|++++|++.++++.+ +.| +...|..++.++.+.|++++
T Consensus 110 ----------------------~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~ 164 (315)
T d2h6fa1 110 ----------------------KNYQVWHHRRVLVEWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDN 164 (315)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred ----------------------hhhhHHHHHhHHHHhhccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHH
Confidence 1566777777777788888888888888773 445 57788888888888888888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC------hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHH
Q 005642 492 AVNLIEQM-PFEA-DVGMWSSILRGCVAHGD------KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563 (686)
Q Consensus 492 A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 563 (686)
|++.++++ ...| +...|+.+...+.+.+. +++|+..+.++++..|++..+|..++.++...| .+++.+.++
T Consensus 165 Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~ 243 (315)
T d2h6fa1 165 ELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLN 243 (315)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHH
T ss_pred HHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHH
Confidence 88888877 3445 56667776666655554 567888888888888888888888887766544 577777777
Q ss_pred HHHhc
Q 005642 564 IMREK 568 (686)
Q Consensus 564 ~~~~~ 568 (686)
...+.
T Consensus 244 ~~~~l 248 (315)
T d2h6fa1 244 QLLDL 248 (315)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=1.3e-07 Score=91.15 Aligned_cols=191 Identities=8% Similarity=-0.033 Sum_probs=104.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHccC-ChhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLG-FLEHGKQVHGHACKVGVIDDVIVASALLDT 281 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 281 (686)
+|+.+...+.+.+.+++|+++++++++. .| +...|.....++...| ++++|...++.+++.. +-+..+|..+...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 4555555555666666666666666653 33 3334555555555544 3566666666666653 2345556666666
Q ss_pred HHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCC------
Q 005642 282 YSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGS------ 349 (686)
Q Consensus 282 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~------ 349 (686)
+.+.|++++|+..++++. +.+..+|..+...+...|++++|...++++.+ .+..+|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhh
Confidence 666666666666666555 22444555555556666666666665555543 234556655555555444
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 005642 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399 (686)
Q Consensus 350 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 399 (686)
+++|+..+.+..+.. +.+...+..+...+. ....+++.+.+....+..
T Consensus 202 ~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~ 249 (315)
T d2h6fa1 202 LEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQ 249 (315)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHT
T ss_pred hHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhC
Confidence 356666666666542 224444544444333 333456666666555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.86 E-value=1.9e-07 Score=89.83 Aligned_cols=181 Identities=8% Similarity=0.025 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 005642 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462 (686)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 462 (686)
.+++..+|++.++...+.+...|...+..+.+.|+ .|..+|+++.+.........|...+..+.+.|+.+.|.++|+.
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45566666666554444445555555555555555 6666666666543333345677777777777777778888777
Q ss_pred HHHhcCCCC-ChhHHHHHHHHH-HhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 463 MKWQYHIDP-EIEHYSCMVDLF-ARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 463 ~~~~~~~~p-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
+.+ ..| +...|...+... ...|+.+.|..+|+.+. .+.+...|...+..+...|+++.|..+|++++...|.+
T Consensus 160 al~---~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 ARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHH---hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 762 223 344444444332 33567777777777762 23346667777777777788888888888877765543
Q ss_pred c----hhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 539 A----CAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 539 ~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
+ ..|...+..-...|+.+.+..+.+++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 35666666666677888777777776653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.85 E-value=1.1e-08 Score=100.23 Aligned_cols=260 Identities=8% Similarity=-0.049 Sum_probs=159.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHH-HHHHHH---HHH-------HccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 005642 214 SNNEDTEALLLFHKMRRNGVLEDAS-TLASVL---SAC-------SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282 (686)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll---~~~-------~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 282 (686)
..+..++|++++++.++. .|+.. .|+..- ... ...|.++++..+++.+.+.. +.+...|..+..++
T Consensus 41 ~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~ 117 (334)
T d1dcea1 41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHH
Confidence 333457788888887763 45543 332222 222 22344667777777777764 33566666666666
Q ss_pred HhcCC--hhHHHHHHHhcc---cCCchhHH-HHHHHHHhCCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhH
Q 005642 283 SKRGM--PSDACKLFSELK---VYDTILLN-TMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEA 353 (686)
Q Consensus 283 ~~~g~--~~~A~~~~~~~~---~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 353 (686)
...++ +++|...++++. +++...+. .....+...+..++|...++.+.+. +..+|+.+...+.+.|++++|
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHH
Confidence 66554 677777777665 22344433 3345566667777777777776653 335666677777777777665
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCC
Q 005642 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGV 433 (686)
Q Consensus 354 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~ 433 (686)
...++..... +..
T Consensus 198 ~~~~~~~~~~-------------------------------------------------------------~~~------ 210 (334)
T d1dcea1 198 GPQGRLPENV-------------------------------------------------------------LLK------ 210 (334)
T ss_dssp SSCCSSCHHH-------------------------------------------------------------HHH------
T ss_pred HHHHHHhHHh-------------------------------------------------------------HHH------
Confidence 4333222110 000
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005642 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSI 511 (686)
Q Consensus 434 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 511 (686)
+ ..+...+...+..+++...+..... ..+++...+..++..+...|++++|...+.+. ...| +...|..+
T Consensus 211 --~----~~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 282 (334)
T d1dcea1 211 --E----LELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 282 (334)
T ss_dssp --H----HHHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --H----HHHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHH
Confidence 0 0011112223344455555665552 22334555666777777888889998888876 3555 35668888
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhh
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 551 (686)
...+...|+.++|...++++++++|++...|..+...+.-
T Consensus 283 ~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 283 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 8889999999999999999999999888888888777754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=5.2e-08 Score=91.21 Aligned_cols=37 Identities=8% Similarity=-0.060 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 542 (686)
.+|..+...+...|++++|...++++++.+|++...|
T Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 210 ETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 4566778888889999999999999999888765433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=1.5e-08 Score=95.07 Aligned_cols=195 Identities=10% Similarity=-0.057 Sum_probs=121.7
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 414 (686)
.+|..+...|.+.|++++|+..|++..+. -+-+..++..+..++.+.|++++|...|+++++...
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------------- 102 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAI-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-------------- 102 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhcc-CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh--------------
Confidence 35666677777777777777777777764 233456667777777777777777777776665431
Q ss_pred HhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHH
Q 005642 415 CKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAV 493 (686)
Q Consensus 415 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 493 (686)
-+..++..+...+...|++++|.+.|+...+. .| +......+...+.+.+..+.+.
T Consensus 103 --------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~ 159 (259)
T d1xnfa_ 103 --------------------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKE 159 (259)
T ss_dssp --------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred --------------------hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHH
Confidence 14456777777788888888888888887732 34 4444444444555555544444
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 494 NLIEQMP-FEADVGMWSSILRGCV----AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 494 ~~~~~~~-~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.+..... ..++...+. ++..+. ..+..+.+...+.......|....+|..++.+|...|++++|.+.+++..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 160 VLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhccchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4433331 112211121 112211 1223444444444444456666678899999999999999999999988764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.80 E-value=2.6e-07 Score=88.83 Aligned_cols=186 Identities=13% Similarity=0.062 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHH
Q 005642 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEM 428 (686)
Q Consensus 351 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m 428 (686)
++|..+|++..+...+.+...+...+....+.|+++.|..+|+.+++........+|...+....+.+. .|.++|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 444455555444322223333444444444555555555555555443322223344555554444444 555555555
Q ss_pred HHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC
Q 005642 429 RNTGVKPTIITFTAILS-ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM----PFEA 503 (686)
Q Consensus 429 ~~~~~~p~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p 503 (686)
.+.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...+...++.+.+.|+++.|..+|++. +..|
T Consensus 161 l~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 161 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 544322 2333333332 234568899999999999853 3336888999999999999999999999986 2333
Q ss_pred C--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 005642 504 D--VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 504 ~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 539 (686)
+ ...|...+.--...|+.+.+..+++++.+..|+..
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 2 45788888888899999999999999999888654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=2.2e-09 Score=105.26 Aligned_cols=209 Identities=6% Similarity=-0.120 Sum_probs=133.2
Q ss_pred HHHHHHHHhhCCC---CCchhHHHHHHHHHhCC--ChhhHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCChHHHHHHH
Q 005642 319 IEDAKHIFRTMPN---KSLISWNSMIVGLSQNG--SPIEALDLFCNMNKLDLRMDKFSLA-SVISACANISSLELGEQVF 392 (686)
Q Consensus 319 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~ 392 (686)
+++|+..++...+ ++...|..+..++...+ ++++|+..+.++.+.. +++...+. .....+...+..+.|...+
T Consensus 89 ~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~ 167 (334)
T d1dcea1 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHH
Confidence 4445555554432 23445555555555444 3566666776666542 22233332 3334444556666666665
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC
Q 005642 393 ARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472 (686)
Q Consensus 393 ~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 472 (686)
+.+++.. + -+...|..+...+.+.|++++|...++...+ +.|+
T Consensus 168 ~~~i~~~---------------------------------p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~ 210 (334)
T d1dcea1 168 DSLITRN---------------------------------F-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN---VLLK 210 (334)
T ss_dssp HTTTTTT---------------------------------C-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH---HHHH
T ss_pred HHHHHcC---------------------------------C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH---hHHH
Confidence 5544332 1 2566777777778888887777655554431 1121
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQM-PFE-ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
.......+...+..+++...+... ... ++...+..++..+...|+.++|...+.+..+.+|.+..++..++.++.
T Consensus 211 ---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 287 (334)
T d1dcea1 211 ---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALD 287 (334)
T ss_dssp ---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 112333445566677777776665 222 344456667777888899999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhc
Q 005642 551 TSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 551 ~~g~~~~a~~~~~~~~~~ 568 (686)
..|++++|.++++++.+.
T Consensus 288 ~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 288 PLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp TGGGHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999988874
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=1.2e-07 Score=84.88 Aligned_cols=98 Identities=9% Similarity=-0.029 Sum_probs=71.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 005642 471 PEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548 (686)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 548 (686)
|+...+...+..|.+.|++++|+..|++. ...| +...|..+..+|.+.|++++|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 55666666677777777777777777665 3344 466677777777777777777777777777777777777777777
Q ss_pred HhhcCCcchHHHHHHHHHhc
Q 005642 549 FATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 549 ~~~~g~~~~a~~~~~~~~~~ 568 (686)
|...|++++|...+++..+.
T Consensus 82 ~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 77778888877777776653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=4e-07 Score=72.91 Aligned_cols=102 Identities=12% Similarity=0.042 Sum_probs=61.7
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005642 444 LSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGD 520 (686)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~ 520 (686)
...+...|++++|+..|++..+ ..| +...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh---cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 3445566666666666666662 234 4556666666666666666666666665 2233 45556666666666666
Q ss_pred hhHHHHHHHHHHccCCCCchhHHHHHHH
Q 005642 521 KGLGRKVAERMIELDPENACAYIQLSSI 548 (686)
Q Consensus 521 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 548 (686)
+++|+..++++++.+|+++.++..+..+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6666666666666666666555555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=2.5e-07 Score=74.08 Aligned_cols=92 Identities=10% Similarity=0.133 Sum_probs=83.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCC
Q 005642 477 SCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554 (686)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 554 (686)
..-+..+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..+.++++++|+++.+|..++.++...|+
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 34567788999999999999998 3445 678899999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhc
Q 005642 555 WEKSSLIRDIMREK 568 (686)
Q Consensus 555 ~~~a~~~~~~~~~~ 568 (686)
+++|...+++..+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=7.1e-07 Score=76.05 Aligned_cols=118 Identities=10% Similarity=0.102 Sum_probs=85.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005642 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVA 517 (686)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~ 517 (686)
......|.+.|++++|+..|++..+ +.| +...|..++.+|...|++++|+..|+++ ...| +...|..++.++..
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccc---cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 3345567788888888888888873 345 6778888888888888888888888877 3445 46778888888888
Q ss_pred cCChhHHHHHHHHHHccCCCCchhHHHHHHHH--hhcCCcchHHHH
Q 005642 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIF--ATSGEWEKSSLI 561 (686)
Q Consensus 518 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 561 (686)
.|++++|...+++++.+.|+++.++..+..+. ...+.++++...
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888888888888888877766665543 233445555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.44 E-value=2.5e-07 Score=82.61 Aligned_cols=116 Identities=8% Similarity=-0.062 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005642 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSI 511 (686)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 511 (686)
|+...+......+.+.|++++|+..|+++.+ +.| ++..|..++.+|.+.|++++|+..|++. .+.| +...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~---~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 6777778888899999999999999999883 346 7889999999999999999999999988 4677 47789999
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 553 (686)
..++...|++++|+..+++++++.|++...+...++.+...+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~ 120 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999988876555544444444433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.43 E-value=3.4e-07 Score=72.64 Aligned_cols=90 Identities=14% Similarity=0.040 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 553 (686)
...++..+.+.|++++|...|++. ...| +...|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 345677888999999999999987 3556 58889999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHH
Q 005642 554 EWEKSSLIRDIM 565 (686)
Q Consensus 554 ~~~~a~~~~~~~ 565 (686)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999998864
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=5e-06 Score=73.02 Aligned_cols=121 Identities=12% Similarity=0.038 Sum_probs=80.8
Q ss_pred HHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHH
Q 005642 147 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALL 223 (686)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 223 (686)
...+...|+++.|++.|+++.+++...|..+...|.+.|++++|++.|++..+ .++..|..+..+|.+.|++++|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence 34456678888888888887777777777777888888888888888876543 456677778888888888888888
Q ss_pred HHHHHHHCCC--------------CcC-HHHHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 005642 224 LFHKMRRNGV--------------LED-ASTLASVLSACSSLGFLEHGKQVHGHACKVG 267 (686)
Q Consensus 224 ~~~~m~~~g~--------------~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 267 (686)
.|++.+...- +++ ..++..+..++...|++++|.+.+....+..
T Consensus 92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8777764310 011 2334445555556666666666666555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=8.6e-07 Score=75.53 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 553 (686)
+...+..|.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|++..+|..++.++...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 344566788999999999999998 3455 67889999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcC
Q 005642 554 EWEKSSLIRDIMREKH 569 (686)
Q Consensus 554 ~~~~a~~~~~~~~~~~ 569 (686)
++++|...+++..+..
T Consensus 93 ~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK 108 (159)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999888753
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=1e-05 Score=76.42 Aligned_cols=206 Identities=9% Similarity=-0.016 Sum_probs=122.4
Q ss_pred HHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC--chhHHHHHHHHHhCCChhhHHH
Q 005642 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS--LISWNSMIVGLSQNGSPIEALD 355 (686)
Q Consensus 278 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~ 355 (686)
....|...|++++|...|.+. .++......+. ..+|..+..+|.+.|++++|+.
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA------------------------~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~ 98 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKA------------------------ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHH------------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHH------------------------HHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 456777888888888877633 23332322211 2466777777778888888887
Q ss_pred HHHHHHHCCC---C--CCHHHHHHHHHHHH-ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHH
Q 005642 356 LFCNMNKLDL---R--MDKFSLASVISACA-NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMR 429 (686)
Q Consensus 356 ~~~~m~~~g~---~--p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~ 429 (686)
.+++..+.-. . ....++..+...+. ..|++++|...+..+.+. +..
T Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l--------------------------~~~-- 150 (290)
T d1qqea_ 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--------------------------YAQ-- 150 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------------------------HHH--
T ss_pred HHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH--------------------------HHh--
Confidence 7776543211 1 11234445555554 458888888888765432 111
Q ss_pred HCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CC
Q 005642 430 NTGVKP-TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-----IEHYSCMVDLFARAGCLNEAVNLIEQMP-FE 502 (686)
Q Consensus 430 ~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 502 (686)
.+.++ ...++..+...+...|++++|.+.|+++.......+. ...+...+..+...|+++.|...+++.. ..
T Consensus 151 -~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 151 -DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred -cCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 11111 1245777888899999999999999998743222221 1234455566777899999999998873 33
Q ss_pred CC------HHHHHHHHHHHHh--cCChhHHHHHHHHHHccCC
Q 005642 503 AD------VGMWSSILRGCVA--HGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 503 p~------~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~p 536 (686)
|. ......++.++.. .+.+++|+..|+++.+++|
T Consensus 230 ~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 230 PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp --------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred CCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 32 2234555555544 2346777777766665554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=9.1e-06 Score=76.83 Aligned_cols=123 Identities=7% Similarity=-0.003 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCC-----CC----hhhHHHHHHHHHccCCHHHHHHHHhhcCC-----CC----hhh
Q 005642 143 GSSLVNLYGKCGDFNSANQVLNMMKE-----PD----DFCLSALISGYANCGKMNDARRVFDRTTD-----TS----SVM 204 (686)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~ 204 (686)
|......|...|++++|.+.|.+..+ .+ ..+|..+...|.+.|++++|.+.+++..+ .+ ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 44456778888889998888877653 12 13455555666666666666665554322 01 223
Q ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHH----CCCCcC-HHHHHHHHHHHHccCChhhHHHHHHHHHH
Q 005642 205 WNSMISGYIS-NNEDTEALLLFHKMRR----NGVLED-ASTLASVLSACSSLGFLEHGKQVHGHACK 265 (686)
Q Consensus 205 ~~~li~~~~~-~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 265 (686)
+..+...|.. .|++++|++.|++..+ .+.++. ..++..+...+...|++++|...++++.+
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 4444444432 3555555555555432 111111 12344444455555555555555555444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=6.9e-06 Score=72.07 Aligned_cols=124 Identities=11% Similarity=-0.037 Sum_probs=77.8
Q ss_pred HHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHH
Q 005642 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALD 355 (686)
Q Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 355 (686)
...+...|+++.|.+.|.++.++++.+|..+..+|...|++++|.+.|++..+ .++..|..+..++.+.|++++|+.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence 44455666666666666666666666666666666666777776666666654 244566777777777777777777
Q ss_pred HHHHHHHCCC--------------CCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc
Q 005642 356 LFCNMNKLDL--------------RMD-KFSLASVISACANISSLELGEQVFARVTIIGLDS 402 (686)
Q Consensus 356 ~~~~m~~~g~--------------~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 402 (686)
.|++...... .++ ..++..+..++.+.|++++|.+.+....+....+
T Consensus 92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 7776654210 001 1344455666777777777777777766655444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=4.9e-06 Score=71.43 Aligned_cols=114 Identities=12% Similarity=0.065 Sum_probs=62.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 005642 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-------------IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA- 503 (686)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 503 (686)
.+......+.+.|++++|+..|++........+. ..+|..+..+|.+.|++++|+..+++. ...|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~ 94 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 94 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence 4455566788889999999999988743222221 123334444555555555555555544 2333
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc
Q 005642 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552 (686)
Q Consensus 504 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 552 (686)
++..|..+..++...|++++|+..++++++++|+++.+...+..+....
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555544444444333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.3e-06 Score=70.06 Aligned_cols=106 Identities=14% Similarity=0.056 Sum_probs=84.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCCH---HHHHHHH
Q 005642 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGC---LNEAVNLIEQM-PFEADV---GMWSSIL 512 (686)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~li 512 (686)
..++..+...+++++|.+.|++..+ ..| ++.++..+..++.+.++ +++|+.+|+++ ...|+. .+|..+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 3567778888999999999999883 345 78899999999987554 45699999987 344433 3677889
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
.+|.+.|++++|+..++++++++|++..+......+.
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 9999999999999999999999999987666555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.24 E-value=0.00043 Score=63.82 Aligned_cols=223 Identities=9% Similarity=-0.055 Sum_probs=128.4
Q ss_pred chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCcchhHHHH
Q 005642 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----ISSLELGEQVFARVTIIGLDSDQIISTS 409 (686)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 409 (686)
+..+..+...+.+.+++++|++.|++..+.| +...+..|...+.. ..+...+...+....+.+. ......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhc
Confidence 3344445555555555555555555555543 23333333333332 3355555555555554441 112222
Q ss_pred HHHHHHhchh------HHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccCCHHHHHHHHHHHHHhcCCCCChhHHHHH
Q 005642 410 LVDFYCKCGY------DALALFNEMRNTGVKPTIITFTAILSAC----DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479 (686)
Q Consensus 410 li~~~~~~~~------~A~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 479 (686)
+...+..... .|...++...+.|.. .....+...+ ........+...+..... ..+...+..|
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L 148 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTIL 148 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhh
Confidence 2222222111 556666665555432 2222222222 234556667777766552 2356667777
Q ss_pred HHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCchhHHHHHHHHhh
Q 005642 480 VDLFAR----AGCLNEAVNLIEQMPFEADVGMWSSILRGCVA----HGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551 (686)
Q Consensus 480 ~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 551 (686)
...|.. ..+...+...++......+......+...+.. ..++++|+..|+++.+.. ++.++..|+.+|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~ 226 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYN 226 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHT
T ss_pred hhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHc
Confidence 777765 45666777777766433466666667666654 568999999999998864 56778899999876
Q ss_pred ----cCCcchHHHHHHHHHhcCCC
Q 005642 552 ----SGEWEKSSLIRDIMREKHVG 571 (686)
Q Consensus 552 ----~g~~~~a~~~~~~~~~~~~~ 571 (686)
..++++|.+++++..+.|.+
T Consensus 227 G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 227 GEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCCccCHHHHHHHHHHHHHCcCH
Confidence 44899999999999887753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=1.4e-05 Score=68.51 Aligned_cols=96 Identities=8% Similarity=0.063 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 474 EHYSCMVDLFARAGCLNEAVNLIEQM----PFEAD-------------VGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
..+...+..+.+.|++++|+..|++. +..+. ..+|..+..+|.+.|++++|+..++++++++|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 34556677889999999999999876 11111 24567788889999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 537 ENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
+++.++..++.+|...|++++|...+++..+..
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999888754
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.07 E-value=1.6e-05 Score=68.05 Aligned_cols=108 Identities=11% Similarity=-0.035 Sum_probs=53.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 005642 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA-DVGMWSSILRGCVAHG 519 (686)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~li~~~~~~g 519 (686)
......+...|++++|++.|+++.+.. + .........+ .....| ....|..+..++.+.|
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~---~----------~~~~~~~~~~------~~~~~~~~~~~~~nla~~~~~~~ 91 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYV---E----------GSRAAAEDAD------GAKLQPVALSCVLNIGACKLKMS 91 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH---H----------HHHHHSCHHH------HGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh---h----------hhhhhhhhHH------HHHhChhhHHHHHHHHHHHHhhc
Confidence 344555677888888888887765210 0 0000000000 000112 2333444555555555
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
++++|+..+.++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.05 E-value=3.7e-05 Score=65.60 Aligned_cols=130 Identities=8% Similarity=0.035 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-------------IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA 503 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 503 (686)
..+......+.+.|++++|...|++........+. ..+|..+..+|.+.|++++|+..+++. ...|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 34555667788889999999999887643222221 123444566666777777777777665 2333
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcch-HHHHHHHHHh
Q 005642 504 -DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK-SSLIRDIMRE 567 (686)
Q Consensus 504 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 567 (686)
+...|..+..++...|++++|+..++++++++|+++.+...+..+....+.+.+ ..+.++.|.+
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 456666666777777777777777777777777776666666666555444432 3334444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.97 E-value=3.2e-05 Score=64.76 Aligned_cols=109 Identities=9% Similarity=-0.069 Sum_probs=66.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005642 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE---IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515 (686)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~ 515 (686)
.+..-...+.+.|++++|+..|.++..-....++ ...... ... ....+|..+..++
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~-----------------~~~----~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK-----------------KKN----IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH-----------------HHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHh-----------------hhh----HHHHHHhhHHHHH
Confidence 3444555677888999999988887732221111 110000 000 0123455666667
Q ss_pred HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.+.|++++|+..++++++.+|++..+|..++.++...|++++|...+++..+.
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777766653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.94 E-value=3.9e-05 Score=64.25 Aligned_cols=27 Identities=7% Similarity=0.172 Sum_probs=14.7
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 541 AYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+|..++.+|.+.|++++|++.++++.+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~ 95 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLK 95 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccc
Confidence 344555555555555555555555544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=1.6e-05 Score=64.28 Aligned_cols=92 Identities=12% Similarity=0.160 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch-------hHHHHH
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC-------AYIQLS 546 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~ 546 (686)
+..++..+.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++++|++.. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445777888888888888888877 3444 5778888999999999999999999999998887655 455566
Q ss_pred HHHhhcCCcchHHHHHHHHHh
Q 005642 547 SIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.++...+++++|.+++++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 677888899999999887664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=1e-05 Score=64.55 Aligned_cols=92 Identities=10% Similarity=-0.045 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHHHccCCCC--chhHHHHHHHH
Q 005642 477 SCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHG---DKGLGRKVAERMIELDPEN--ACAYIQLSSIF 549 (686)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 549 (686)
..+++.+...+++++|.+.|++. ...| +..++..+..++.+.+ +.++|+.+++++++.+|.+ ..++..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45777888999999999999998 3444 6788888999987655 4567999999999988754 34789999999
Q ss_pred hhcCCcchHHHHHHHHHhc
Q 005642 550 ATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~ 568 (686)
.+.|++++|.++++++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 9999999999999988874
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.90 E-value=0.00045 Score=63.67 Aligned_cols=93 Identities=16% Similarity=0.054 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhccCC-CChhhHHHHHHHHHc----cCCHHHHHHHHhhcCCC-ChhhHHHHHHHHH
Q 005642 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALISGYAN----CGKMNDARRVFDRTTDT-SSVMWNSMISGYI 213 (686)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~ 213 (686)
+..+..|...+.+.+++++|++.|++..+ .+...+..|...|.. ..+...|...++...+. ++..+..+...+.
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~ 81 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYY 81 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccc
Confidence 34455555566666677777777766653 333344444444443 44555555555544332 3333444433333
Q ss_pred h----cCChhHHHHHHHHHHHCC
Q 005642 214 S----NNEDTEALLLFHKMRRNG 232 (686)
Q Consensus 214 ~----~g~~~~A~~~~~~m~~~g 232 (686)
. ..+.+.|...++...+.|
T Consensus 82 ~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 82 SGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHhhhhhhh
Confidence 2 234455555555555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.87 E-value=2.8e-05 Score=66.50 Aligned_cols=82 Identities=9% Similarity=0.013 Sum_probs=55.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
....+..+..++.+.|++++|+..++++ .+.| +...|..+..++...|++++|+..++++++++|++..+...+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445666677777777777777777766 4445 4566777777777777777777777777777777766666666555
Q ss_pred hhcC
Q 005642 550 ATSG 553 (686)
Q Consensus 550 ~~~g 553 (686)
....
T Consensus 156 ~~l~ 159 (169)
T d1ihga1 156 QKIK 159 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=3.4e-06 Score=86.59 Aligned_cols=95 Identities=9% Similarity=-0.066 Sum_probs=40.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
+...+..+...+.+.|+.++|...++... .++ ..++..+...+...|++++|+..|++++++.|++..+|..++.++.
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ------------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 34455555555566666666555444331 111 2345555556666666666666666666666666666666666666
Q ss_pred hcCCcchHHHHHHHHHh
Q 005642 551 TSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 551 ~~g~~~~a~~~~~~~~~ 567 (686)
..|++.+|...+.+...
T Consensus 198 ~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HTTCHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 66666666666655543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.0027 Score=59.66 Aligned_cols=139 Identities=11% Similarity=0.124 Sum_probs=90.0
Q ss_pred hHHHHHHHHHhcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHH
Q 005642 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE 122 (686)
Q Consensus 43 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~ 122 (686)
-...+.+.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+...|.+.. ...
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~--e~~ 86 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGK--EFR 86 (336)
T ss_dssp -------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTT--CHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCc--HHH
Confidence 345677778889999999999987655 7788888899999999999887653 4557777777777652 222
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccC---CCChhhHHHHHHHHHccCCHHHHHHHHhh
Q 005642 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK---EPDDFCLSALISGYANCGKMNDARRVFDR 196 (686)
Q Consensus 123 ~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 196 (686)
. ..+...+...++.....++..|-..|.+++...+++... ..+...++-++..|++.+. ++-.+.++.
T Consensus 87 l-----a~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl~e~l~~ 157 (336)
T d1b89a_ 87 L-----AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMREHLEL 157 (336)
T ss_dssp H-----HHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred H-----HHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHHHHHHHh
Confidence 2 122233445566667788999999999999999998754 3555677888888887653 444444444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.79 E-value=2.2e-05 Score=64.98 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=73.6
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhc----------CChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 447 CDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARA----------GCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
|.+.+.+++|+..|+...+ +.| +...+..++.++... +.+++|+..|++. .+.| +...|..+..
T Consensus 7 ~~r~~~fe~A~~~~e~al~---~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh---hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHH
Confidence 3445667888888888773 345 677777777777643 3345666666665 3445 4566776766
Q ss_pred HHHhcC-----------ChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 514 GCVAHG-----------DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 514 ~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
+|...| ++++|...|+++++++|++...+..|... ..|.+++.+..++|+
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 665543 35778888888888888877655555544 355566666555554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.75 E-value=0.00011 Score=62.47 Aligned_cols=95 Identities=9% Similarity=0.062 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC----C--CCCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 474 EHYSCMVDLFARAGCLNEAVNLIEQM----P--FEAD-----------VGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~--~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
..+.-.+..+.+.|++++|...|++. . ..++ ...|..+..++.+.|++++|+..++++++++|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 44566778889999999999999876 1 1111 23466677888999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 537 ENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
++..+|..++.++...|++++|...++++.+.
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.71 E-value=0.00012 Score=62.81 Aligned_cols=113 Identities=11% Similarity=-0.025 Sum_probs=80.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005642 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL-NEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520 (686)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~ 520 (686)
.........|++++|.+.|..... +.+....- + + ..+.+ .....-++. -....+..+...+...|+
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~---l~rG~~l~----~-~-~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALR---EWRGPVLD----D-L-RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT---TCCSSTTG----G-G-TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh---hCcccccc----c-C-cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 344567788999999999999873 22211100 0 0 00110 011111111 124567888999999999
Q ss_pred hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 521 KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 521 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+++|+..++++++.+|.+...|..++.+|...|++++|.+.|+++.+
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988753
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.70 E-value=0.00011 Score=57.56 Aligned_cols=92 Identities=14% Similarity=-0.025 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 005642 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284 (686)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 284 (686)
+..+...+.+.|++++|+..|++.++.. +-+..+|..+..++.+.|++++|...+++.++.. +.+..++..+...|..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHH
Confidence 3345667778888888888888887742 2356777778888888888888888888888864 3467777788888888
Q ss_pred cCChhHHHHHHHhc
Q 005642 285 RGMPSDACKLFSEL 298 (686)
Q Consensus 285 ~g~~~~A~~~~~~~ 298 (686)
.|++++|.+.+++.
T Consensus 97 ~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 97 EHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 88888888887753
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.63 E-value=0.026 Score=52.70 Aligned_cols=294 Identities=10% Similarity=0.078 Sum_probs=147.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCh
Q 005642 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218 (686)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 218 (686)
+..--..+.+.|.+.|.++.|..++..+. -|..++..+.+.++++.|.+.+.+.. +..+|..+...+.+....
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~ 85 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEF 85 (336)
T ss_dssp ----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHH
Confidence 33444455666667778888888876553 35566677777888888877776553 456777777777776655
Q ss_pred hHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhc
Q 005642 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 219 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 298 (686)
.-+ .+.......+......++..|...|.++....+++..... -..+...++.++..|++.+. +.-.+.+...
T Consensus 86 ~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~ 158 (336)
T d1b89a_ 86 RLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHLELF 158 (336)
T ss_dssp HHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHHHHH
T ss_pred HHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHHHhc
Confidence 433 2222334445556667777777788888877777776543 24456667777777777542 3333333321
Q ss_pred ccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005642 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378 (686)
Q Consensus 299 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 378 (686)
. +......++..|.+.+. |..++..|.+.|++++|..+. .+ ..++..-....+..
T Consensus 159 s--~~y~~~k~~~~c~~~~l------------------~~elv~Ly~~~~~~~~A~~~~---i~--~~~~~~~~~~f~e~ 213 (336)
T d1b89a_ 159 W--SRVNIPKVLRAAEQAHL------------------WAELVFLYDKYEEYDNAIITM---MN--HPTDAWKEGQFKDI 213 (336)
T ss_dssp S--TTSCHHHHHHHHHTTTC------------------HHHHHHHHHHTTCHHHHHHHH---HH--STTTTCCHHHHHHH
T ss_pred c--ccCCHHHHHHHHHHcCC------------------hHHHHHHHHhcCCHHHHHHHH---HH--cchhhhhHHHHHHH
Confidence 1 11111122222222222 334444445555555544332 11 12222223334444
Q ss_pred HHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 005642 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458 (686)
Q Consensus 379 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 458 (686)
+.+..+.+..-++.....+. .|+ ..+.|+..... ..|+ ..++..+.+.++......
T Consensus 214 ~~k~~N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~-----------------~~d~---~r~V~~~~k~~~l~li~p 269 (336)
T d1b89a_ 214 ITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSP-----------------RLDH---TRAVNYFSKVKQLPLVKP 269 (336)
T ss_dssp HHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGG-----------------GCCH---HHHHHHHHHTTCTTTTHH
T ss_pred HHccCChHHHHHHHHHHHHc--CHH--HHHHHHHHhcc-----------------CCCH---HHHHHHHHhcCCcHHHHH
Confidence 45555555554444444332 222 11222211110 1111 223334455566666666
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 459 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
+++... ..+ +..+.+++...|...++++.-.+..+.-
T Consensus 270 ~Le~v~-~~n---~~~vn~al~~lyie~~d~~~l~~~i~~~ 306 (336)
T d1b89a_ 270 YLRSVQ-NHN---NKSVNESLNNLFITEEDYQALRTSIDAY 306 (336)
T ss_dssp HHHHHH-TTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHH-HcC---hHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 776654 223 3467788888888888877666666554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00023 Score=57.16 Aligned_cols=95 Identities=11% Similarity=0.077 Sum_probs=78.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC---CC-----HHHHH
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FE---AD-----VGMWS 509 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~---p~-----~~~~~ 509 (686)
+..+...+.+.|++++|++.|++.++ +.| +...+..+..+|.+.|++++|+..++++. +. +. ..+|.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKE---LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45667788999999999999999984 345 68899999999999999999999999872 11 11 34677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCC
Q 005642 510 SILRGCVAHGDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 510 ~li~~~~~~g~~~~A~~~~~~~~~~~p~ 537 (686)
.+...+...+++++|+..+++.+...|+
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 7888889999999999999999988774
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=1.1e-05 Score=82.79 Aligned_cols=77 Identities=5% Similarity=0.002 Sum_probs=46.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 005642 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-P-FEADVGMWSSILRGC 515 (686)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~ 515 (686)
++..+...+...|++++|...|++.. .+.| +...|+.|+..+...|+..+|+..|.+. . ..|-..++.+|...+
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~---~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAA---QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH---HHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 45555666666666666666666665 2344 4566666666666666666666666655 2 234455566666555
Q ss_pred Hhc
Q 005642 516 VAH 518 (686)
Q Consensus 516 ~~~ 518 (686)
.+.
T Consensus 231 ~~~ 233 (497)
T d1ya0a1 231 SKA 233 (497)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.00021 Score=53.82 Aligned_cols=76 Identities=18% Similarity=0.139 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQMP--------FEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYI 543 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 543 (686)
.+....++..+.+.|++++|+..|++.- ..++ ..++..+..++.+.|++++|+..++++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 3444566777777777777777776651 1223 567888999999999999999999999999999988888
Q ss_pred HHHHH
Q 005642 544 QLSSI 548 (686)
Q Consensus 544 ~l~~~ 548 (686)
.+...
T Consensus 85 Nl~~~ 89 (95)
T d1tjca_ 85 NLKYF 89 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.51 E-value=1.6e-05 Score=65.94 Aligned_cols=86 Identities=9% Similarity=0.007 Sum_probs=70.2
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----------CChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 483 FARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAH----------GDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 483 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
|.+.+.+++|...|+.. ...| +...+..+..++... +.+++|+..++++++++|+++.+|..++.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 55677899999999998 3555 577788888887643 45688999999999999999999999999998
Q ss_pred hcCC-----------cchHHHHHHHHHhc
Q 005642 551 TSGE-----------WEKSSLIRDIMREK 568 (686)
Q Consensus 551 ~~g~-----------~~~a~~~~~~~~~~ 568 (686)
..|+ +++|.+.+++..+.
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 8764 67888888877763
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.46 E-value=0.00021 Score=59.83 Aligned_cols=63 Identities=6% Similarity=-0.114 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCC-----------CchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPE-----------NACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..|+.+..++...|++++|...+++++++.|. ...++..++.+|...|++++|...+++..+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777888888888888888888888764331 1235788899999999999999999988764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.17 E-value=0.0014 Score=54.42 Aligned_cols=101 Identities=13% Similarity=0.044 Sum_probs=76.6
Q ss_pred HHHHHH--HHHHhccCCHHHHHHHHHHHHHhcCCCCC----------hhHHHHHHHHHHhcCChHHHHHHHHhCC-----
Q 005642 438 ITFTAI--LSACDHCGLVKEGQKWFDAMKWQYHIDPE----------IEHYSCMVDLFARAGCLNEAVNLIEQMP----- 500 (686)
Q Consensus 438 ~~~~~l--l~~~~~~g~~~~A~~~~~~~~~~~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----- 500 (686)
.+|..+ ...+.+.|++++|++.|++..+-..-.|+ ...|+.+..+|...|++++|...+++..
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 345555 44566789999999999998753332232 3578889999999999999999888751
Q ss_pred ---CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 501 ---FEAD-----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 501 ---~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
..++ ...+..+..+|...|++++|+..|++++++.|+.
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 2232 2246778899999999999999999999976643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.03 E-value=0.00026 Score=64.80 Aligned_cols=121 Identities=12% Similarity=0.019 Sum_probs=84.5
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 005642 447 CDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGL 523 (686)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~ 523 (686)
..+.|++++|+..+++.++ ..| +...+..++..|+..|++++|...|+.. ...|+ ...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 3467999999999999883 455 7889999999999999999999999887 35664 4555555555555544444
Q ss_pred HHHHHHHHHc-cCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 524 GRKVAERMIE-LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 524 A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
+.....+... ..|+....+...+.++...|++++|.+.++++.+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 3332222111 2344444556667788889999999999988887543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.00 E-value=0.00086 Score=61.19 Aligned_cols=104 Identities=12% Similarity=-0.028 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC-HHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQMP--FEAD-VGMWSSI 511 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~-~~~~~~l 511 (686)
|...+..+...++..|++++|.+.++...+ +.|+ ...+..+..++...+..+++..-..... ..|+ ...+...
T Consensus 29 d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~ 105 (264)
T d1zbpa1 29 DASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVS 105 (264)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHH
Confidence 778899999999999999999999999883 4574 5666666666666665555444333221 2332 3334455
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPENACAY 542 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 542 (686)
...+...|+.++|...++++.+..|..+..+
T Consensus 106 a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 106 FNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 6668889999999999999999999876643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.0011 Score=49.68 Aligned_cols=65 Identities=14% Similarity=0.015 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-------chhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN-------ACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 505 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
...+-.+...+.+.|+++.|+..++++++..|.+ ..++..++.++.+.|++++|...++++.+..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3445568888999999999999999999865443 4578999999999999999999999988754
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.81 E-value=0.012 Score=49.81 Aligned_cols=121 Identities=6% Similarity=-0.011 Sum_probs=76.1
Q ss_pred HHHHHHHhcCChHHHHHHHhccCC--CChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHH
Q 005642 145 SLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 222 (686)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 222 (686)
.........|++++|.+.|.+... ++... ......+-+...-..+.......+..+...+...|++++|+
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l--------~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al 87 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVL--------DDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 87 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTT--------GGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCccccc--------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 344566677888888888777653 11100 00000000000001111112456778888888889999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHH-----cCCCchHHH
Q 005642 223 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-----VGVIDDVIV 274 (686)
Q Consensus 223 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 274 (686)
..++++++. -+-+...|..++.++.+.|+.++|.+.|+++.+ .|+.|...+
T Consensus 88 ~~~~~al~~-~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 88 AELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 988888875 244777888888888888999888888888744 578777654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.77 E-value=0.15 Score=38.45 Aligned_cols=119 Identities=9% Similarity=0.075 Sum_probs=79.7
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--------------------CCCCHHHH
Q 005642 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--------------------FEADVGMW 508 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------~~p~~~~~ 508 (686)
..|.++++.++..+..+. .+..-|+.++--....-+-+-..+.++..+ ...+....
T Consensus 14 ldG~ve~Gveii~k~~~s----s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~v 89 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHV 89 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHH
T ss_pred HhhhHHhHHHHHHHHccc----CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHH
Confidence 356666666666666532 233334444433333334444444443331 11234455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCC
Q 005642 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (686)
...++.+..+|+-+.-..+++.+++.+.-++.....++.+|.+.|...++-+++++..++|++
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 667788899999999999999988866558888999999999999999999999999998874
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.49 E-value=0.15 Score=40.14 Aligned_cols=111 Identities=5% Similarity=-0.135 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHH
Q 005642 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA----HGDKGLGRKV 527 (686)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~ 527 (686)
++++|.++|++..+ .+ +......|. .....+.++|++.+++....-++.....+...|.. ..|.++|.+.
T Consensus 8 d~~~A~~~~~kaa~-~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~ 81 (133)
T d1klxa_ 8 DLKKAIQYYVKACE-LN---EMFGCLSLV--SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 81 (133)
T ss_dssp HHHHHHHHHHHHHH-TT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHH-CC---Chhhhhhhc--cccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHH
Confidence 56677777777662 33 222222232 23345677777777776322345555555555543 4578889999
Q ss_pred HHHHHccCCCCchhHHHHHHHHhh----cCCcchHHHHHHHHHhcCC
Q 005642 528 AERMIELDPENACAYIQLSSIFAT----SGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 528 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 570 (686)
++++.+.. ++.+...|+.+|.. ..+.++|.+++++..+.|.
T Consensus 82 ~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 82 YSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 99988653 45677888888876 4688899999998887764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.12 E-value=0.15 Score=38.95 Aligned_cols=70 Identities=10% Similarity=0.128 Sum_probs=35.7
Q ss_pred CChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 471 PEIEHYSCMVDLFARAGC---LNEAVNLIEQM-PFEA-D-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 471 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
|+..+-.....++.+... .++++.+++++ ...| + ...+-.+.-+|.+.|++++|++.++++++++|++..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 344454555555554432 34455555554 1222 2 234444555556666666666666666666665544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.81 E-value=0.53 Score=35.78 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHccCCCCc-hhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 503 ADVGMWSSILRGCVAHG---DKGLGRKVAERMIELDPENA-CAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 503 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
|...+-.....++.++. +.++|+.+++++...+|.+. ..+..|+-+|.+.|++++|.++++.+.+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45555555666666553 45677788888777777553 56777788888888888888888877663
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.33 E-value=1.6 Score=32.75 Aligned_cols=140 Identities=9% Similarity=-0.001 Sum_probs=93.8
Q ss_pred HHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccC-CchhHHHHHHHHHhCCCHHHHHHH
Q 005642 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIEDAKHI 325 (686)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 325 (686)
+.-.|.++++.++..+..+.. +..-||.++--....-+-+-..++++.+-.- |.. ..+++......
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls----------~C~Nlk~vv~C 78 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD----------KCQNLKSVVEC 78 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG----------GCSCTHHHHHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCch----------hhhcHHHHHHH
Confidence 345688889999888888753 4455566665555556666666666655421 211 12222222222
Q ss_pred HhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC
Q 005642 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 401 (686)
Q Consensus 326 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 401 (686)
+-.+. .+....+..+..+.++|+-+.-.++++.+.+. -+|++.....+..+|.+.|+..++.+++.++.+.|+.
T Consensus 79 ~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 79 GVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 22222 23445566778888899999888998887774 5788888888999999999999999999999888864
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.31 E-value=0.97 Score=35.03 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=9.7
Q ss_pred CChhhHHHHHHHHHHCC
Q 005642 348 GSPIEALDLFCNMNKLD 364 (686)
Q Consensus 348 g~~~~A~~~~~~m~~~g 364 (686)
.+.++|..+|++..+.|
T Consensus 109 ~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 109 KNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 35556666666665544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.12 E-value=6.8 Score=37.48 Aligned_cols=348 Identities=9% Similarity=-0.004 Sum_probs=152.0
Q ss_pred HHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHccCChhhH
Q 005642 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHG 256 (686)
Q Consensus 178 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a 256 (686)
+..+.+.++++.....+...+ .+...-.....+....|+.++|...+...=..| ..|+ ..
T Consensus 79 l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~------------------~c 139 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN------------------AC 139 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT------------------HH
T ss_pred HHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch------------------HH
Confidence 444555566655554443221 123333344555555666666655555443332 1121 12
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchh
Q 005642 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336 (686)
Q Consensus 257 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 336 (686)
..++..+.+.|.. +...+-.-+......|++..|..+...+...........+....+.. .+........ .+...
T Consensus 140 ~~l~~~~~~~~~l-t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~---~~~~~~~~~~-~~~~~ 214 (450)
T d1qsaa1 140 DKLFSVWRASGKQ-DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPN---TVLTFARTTG-ATDFT 214 (450)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGG---GHHHHHHHSC-CCHHH
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChH---hHHHHHhcCC-CChhh
Confidence 2233333333322 22222234444555566777776666554333333444444433222 2222222222 22222
Q ss_pred HHHHHHHHHh--CCChhhHHHHHHHHHHCCCCCCHHHHHH----HHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHH
Q 005642 337 WNSMIVGLSQ--NGSPIEALDLFCNMNKLDLRMDKFSLAS----VISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410 (686)
Q Consensus 337 ~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 410 (686)
...+..++.+ ..+.+.|..++........ .+...... +.......+..+.+...+......+.......+ .
T Consensus 215 ~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w--~ 291 (450)
T d1qsaa1 215 RQMAAVAFASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIER--R 291 (450)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHH--H
T ss_pred hHHHHHHHHHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHH--H
Confidence 2222222222 2456666666666554321 12211111 111222334455555555554444332222222 2
Q ss_pred HHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 005642 411 VDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGC 488 (686)
Q Consensus 411 i~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 488 (686)
+....+.++ .+...+..|...... ...-.-=+..++...|+.+.|..+|..+.. .++ .|..|.. .+.|.
T Consensus 292 ~~~al~~~~~~~~~~~~~~l~~~~~~-~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa--~~Lg~ 362 (450)
T d1qsaa1 292 VRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAA--QRIGE 362 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHH--HHTTC
T ss_pred HHHHHHcCChHHHHHHHHhcCccccc-HHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHH--HHcCC
Confidence 222222222 444555544321111 122222234555666666666666666541 122 3333321 11221
Q ss_pred hHHHHHHHHhCCCCCC-HHH---HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHH
Q 005642 489 LNEAVNLIEQMPFEAD-VGM---WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564 (686)
Q Consensus 489 ~~~A~~~~~~~~~~p~-~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (686)
.-.. . .......+. ... -...+..+...|....|...+..+.+.. ++.-...++....+.|.++.|+....+
T Consensus 363 ~~~~-~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~ 438 (450)
T d1qsaa1 363 EYEL-K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (450)
T ss_dssp CCCC-C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCC-C-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 1000 0 000001111 111 1123455678899999988888777543 344577788888899999999887664
Q ss_pred H
Q 005642 565 M 565 (686)
Q Consensus 565 ~ 565 (686)
.
T Consensus 439 ~ 439 (450)
T d1qsaa1 439 G 439 (450)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=85.70 E-value=15 Score=34.79 Aligned_cols=262 Identities=12% Similarity=0.038 Sum_probs=144.8
Q ss_pred HHHHHHHhcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHHHHH
Q 005642 46 RLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGK 125 (686)
Q Consensus 46 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~ 125 (686)
.-+..+.+.++.......+...+ .+...-.....+....|+.++|...+..+-.. +....+...
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~---------------~~~~p~~c~ 140 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT---------------GKSQPNACD 140 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC---------------SSCCCTHHH
T ss_pred HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------------CCCCchHHH
Confidence 33455666666666665554322 23444445556666777777776665544220 011222333
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhH
Q 005642 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 205 (686)
Q Consensus 126 ~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 205 (686)
.++..+.+.|. ++...+-.-+......|+...|..+...+...........+....+...+ ........ .+....
T Consensus 141 ~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~---~~~~~~~~-~~~~~~ 215 (450)
T d1qsaa1 141 KLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTTG-ATDFTR 215 (450)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHSC-CCHHHH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhH---HHHHhcCC-CChhhh
Confidence 44444444443 34444444555566678899999888887765555555666555433333 22222222 222222
Q ss_pred HHHHHHHHh--cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHH----HHccCChhhHHHHHHHHHHcCCCchHHHHHHHH
Q 005642 206 NSMISGYIS--NNEDTEALLLFHKMRRNGVLEDASTLASVLSA----CSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279 (686)
Q Consensus 206 ~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 279 (686)
..+..++.+ ..+.+.+..++....... ..+......+-.. ....+..+.+..........+. +.......+
T Consensus 216 ~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~ 292 (450)
T d1qsaa1 216 QMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRV 292 (450)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHH
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHH
Confidence 222233222 357788888888776542 2222222222222 2344566777777776666543 333334455
Q ss_pred HHHHhcCChhHHHHHHHhcccC---CchhHHHHHHHHHhCCCHHHHHHHHhhCCC
Q 005642 280 DTYSKRGMPSDACKLFSELKVY---DTILLNTMITVYSSCGRIEDAKHIFRTMPN 331 (686)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 331 (686)
......+++..+...++.+... .....-=+.+++...|+.+.|...|.....
T Consensus 293 ~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 5566778888888888887632 222334566888889999999988888754
|