Citrus Sinensis ID: 005651

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-----
MTDYRLPSTMNLWTDDNGSVMEAFMSSDLTGIWPPSQSSASTADPMKTHISSSSQQQQQQQQFFNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSSMLGWGDGYYKGEGEKGKSSKIKTSSAAEQEHRKKVLRELNSLISGSTSSPTDDAVDEEVTDTEWFFLISMTQSFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELGSTEVIIQNSDLMNKVRFLFNFNGSMEIGTWPSAMQNPDQGENDPSSWINDPSPTPAPTAGFIEIKDSTAAATTTTTTTTTTTTPAIGSGSASNLSKGIHFELPSSVSLTESVDLQHQQIPQTQSFFTRELNFSEYAYDHNSVKNGSSRLFKPESGEILNFAESKRSSCTGNGNNSLLSNHSQFVAEDSNKKKRSPTSRGSTEEGMLSFTSGVILPSSGVVKSSGGAGDSDHSDLEASVVKDPDSSRVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKELAGGGKDSHSGPSTSDQDLKMSNHASKLIDLDIEVKIIGWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVGDTQ
ccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHccccccEEEEEEEEcccccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEccEEcccccccccccccccEEcccccEEEcccccccccccccccccccccccEEEEEEccccEEEEccccEEcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEccEEEEEEEccccccHHHHHHHHHHccccEEEEEEEEEcccEEEEEEEEEEccccccHHHHHHHHHHHHHHcc
cccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccHHccHHHHHHHHHHHHHHcccccEEEEEEEEcccccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHccccEEEHHEHEEEEccccccccccccccHHHccccEEEEcccccccccHHHHHHHHHHcccEEEEEEEccccEEEEcccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEEcccEEEEEEEEEcccccccHHHHHHHHHHHHHccc
mtdyrlpstmnlwtddngSVMEAFMssdltgiwppsqssastadpmkthissssQQQQQQQQFFNQETLQQRLQQLIEGSREGWTYAIFWQSscdysgssmlgwgdgyykgegekgksskiktsSAAEQEHRKKVLRELNSlisgstssptddavdeevtDTEWFFLISMTQSfyvtggggggglpgqayfgnspvwvSGAERLansgcdrarqgqvfglqtlvcipsangvvelgSTEVIIQNSDLMNKVRFLFNfngsmeigtwpsamqnpdqgendpsswindpsptpaptagfieikdstaaattttttttttttpaigsgsasnlskgihfelpssvsltesvdlqhqqipqtqsfftrelnfseyaydhnsvkngssrlfkpesgeilnfaeskrssctgngnnsllsnhsqfvaedsnkkkrsptsrgsteegmlsftsgvilpssgvvkssggagdsdhsdleasvvkdpdssrvepekkprkrgrkpangreeplnhVEAERQRREKLNQRFYALRAvvpnvskmdkasLLGDAISYINELRTKLQSAESDKEDLQKELASVKKElagggkdshsgpstsdqdlkmsnhasklidldieVKIIGWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVGDTQ
mtdyrlpstmnlwtddNGSVMEAFMSSDLTGIWPPSQSSASTADPMKTHISSSSQQQQQQQQFFNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSSMLGWGDGYYKgegekgksskiktssaaeqEHRKKVLRELnslisgstssptddavDEEVTDTEWFFLISMTQSFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELGSTEVIIQNSDLMNKVRFLFNFNGSMEIGTWPSAMQNPDQGENDPSSWINDPSPTPAPTAGFIEIKdstaaattttttttttttpaigsgsasnlSKGIHFELPSSVSLTESVDLQHQQIPQTQSFFTRELNFSEYAYDHNSVKNGSSRLFKPESGEILNFAESKRSSCTGNGNNSLLSNHSQfvaedsnkkkrsptsrgsteegmlsfTSGVILPSSGVVKSSGGAGDSDHSdleasvvkdpdssrvepekkprkrgrkpangreeplnhveaERQRREKLNQRFYALravvpnvskmdkaSLLGDAISYINELRTKLQSAESDKEDLQKELASVKKelagggkdshsgpstsdqdlKMSNHASKLIDLDIEVKIIGWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVGDTQ
MTDYRLPSTMNLWTDDNGSVMEAFMSSDLTGIWPPSQSSASTADPMKTHIssssqqqqqqqqFFNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSSMLGWGDgyykgegekgksskIKTSSAAEQEHRKKVLRELNSLISGSTSSPtddavdeevtdteWFFLISMTQSFYVTgggggggLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELGSTEVIIQNSDLMNKVRFLFNFNGSMEIGTWPSAMQNPDQGENDPSSWINDPSPTPAPTAGFIEIKDStaaattttttttttttPAIGSGSASNLSKGIHFELPSSVSLTESVDLQHQQIPQTQSFFTRELNFSEYAYDHNSVKNGSSRLFKPESGEILNFAESKRSSCTgngnnsllsnHSQFVAEDSNKKKRSPTSRGSTEEGMLSFTSGVILPssgvvkssggagdsdhsdLEASVVKDPDSSrvepekkprkrgrkpANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKELAGGGKDSHSGPSTSDQDLKMSNHASKLIDLDIEVKIIGWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVGDTQ
***************************************************************************LIEGSREGWTYAIFWQSSCDYSGSSMLGWGDGYY*************************************************VTDTEWFFLISMTQSFYV*************YFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELGSTEVIIQNSDLMNKVRFLFNFNGSMEIGTW*********************************************************************************************SFFTRELNFSEYAYD************************************************************************************************************************************************QRFYALRAVVPNVSKMDKASLLGDAISYINEL**************************************************KLIDLDIEVKIIGWDAMIRIQ**********LMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVL********
*******STMNLWTDDNGSVMEAFMSSDLTGIWPPSQ***********************************LQQLIEGSREGWTYAIFWQSSCDYSGSSMLGWGDGYYKGE***************************N************DAVDEEVTDTEWFFLISMTQSFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELGSTEVIIQNSDLMNKVRFLFNFNGSME****************************************************************************************************************************************************************************************************************************************************************QRFYALRAVVPNVSKMDKASLLGDAISYINELR******************************************************DIEVKIIGWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVG***
MTDYRLPSTMNLWTDDNGSVMEAFMSSDLTGIWPP*****************************NQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSSMLGWGDGYYKGE********************KKVLRELNSLIS************EEVTDTEWFFLISMTQSFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELGSTEVIIQNSDLMNKVRFLFNFNGSMEIGTWPSAMQ**********SWINDPSPTPAPTAGFIEIKDSTAAATTTTTTTTTTTTPAIGSGSASNLSKGIHFELPSSVSLTESVDLQHQQIPQTQSFFTRELNFSEYAYDHNSVKNGSSRLFKPESGEILNFAESKRSSCTGNGNNSLLSNHSQF********************GMLSFTSGVILPSSGV**************************************************HVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRTKL***********KELASVKKE******************LKMSNHASKLIDLDIEVKIIGWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVGDTQ
****RLPSTMNLWTDDNGSVMEAFMSSDLTGIWPPS************************QQFFNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSSMLGWGDGYYKGEG*******************K***RELNSLISGSTS**TDDAVDEEVTDTEWFFLISMTQSFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELGSTEVIIQNSDLMNKVRFLFNFNG***********************************************************************************************************************************************************************************************************************************************************RQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRTKLQSAESDKEDLQ*************************************IDLDIEVKIIGWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKV****
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTDYRLPSTMNLWTDDNGSVMEAFMSSDLTGIWPPSQSSASTADPMKTHISSSSQQQQQQQQFFNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSSMLGWGDGYYKGEGEKGKSSKIKTSSAAEQEHRKKVLRELNSLISGSTSSPTDDAVDEEVTDTEWFFLISMTQSFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELGSTEVIIQNSDLMNKVRFLFNFNGSMEIGTWPSAMQNPDQGENDPSSWINDPSPTPAPTAGFIEIKDSTAAATTTTTTTTTTTTPAIGSGSASNLSKGIHFELPSSVSLTESVDLQHQQIPQTQSFFTRELNFSEYAYDHNSVKNGSSRLFKPESGEILNFAESKRSSCTGNGNNSLLSNHSQFVAEDSNKKKRSPTSRGSTEEGMLSFTSGVILPSSGVVKSSGGAGDSDHSDLEASVVKDPDSSRVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAGGGKDSHSGPSTSDQDLKMSNHASKLIDLDIEVKIIGWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVGDTQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query685 2.2.26 [Sep-21-2011]
Q39204623 Transcription factor MYC2 yes no 0.884 0.972 0.552 0.0
O49687589 Transcription factor MYC4 no no 0.824 0.959 0.507 1e-167
Q9FIP9592 Transcription factor ATR2 no no 0.372 0.430 0.637 2e-87
Q9LUK7511 Transcription factor bHLH no no 0.256 0.344 0.561 2e-50
Q9ZPY8566 Transcription factor ABA- no no 0.259 0.314 0.424 7e-38
Q9LNJ5590 Transcription factor bHLH no no 0.233 0.271 0.460 3e-37
O23487467 Transcription factor bHLH no no 0.239 0.351 0.406 3e-33
O23090423 Transcription factor bHLH no no 0.227 0.368 0.447 4e-28
P13027612 Anthocyanin regulatory R- N/A no 0.290 0.325 0.300 2e-21
P13526610 Anthocyanin regulatory Lc N/A no 0.290 0.326 0.300 3e-21
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2 Back     alignment and function desciption
 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/699 (55%), Positives = 468/699 (66%), Gaps = 93/699 (13%)

Query: 1   MTDYRLPSTMNLWT-DDNGSVMEAFMSS-DLTGIWPPSQSSASTADPMKTHISSSSQQQQ 58
           MTDYRL  TMNLWT DDN S+MEAFMSS D++ +W     +++T     T  + +   + 
Sbjct: 1   MTDYRLQPTMNLWTTDDNASMMEAFMSSSDISTLW---PPASTTTTTATTETTPTPAMEI 57

Query: 59  QQQQFFNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSSMLGWGDGYYKGEGEKG-- 116
             Q  FNQETLQQRLQ LIEG+ EGWTYAIFWQ S D+SG+S+LGWGDGYYKGE +K   
Sbjct: 58  PAQAGFNQETLQQRLQALIEGTHEGWTYAIFWQPSYDFSGASVLGWGDGYYKGEEDKANP 117

Query: 117 --KSSKIKTSSAAEQEHRKKVLRELNSLISGSTSSPTDDAVDEEVTDTEWFFLISMTQSF 174
             +SS    S+ A+QE+RKKVLRELNSLISG  + P+DDAVDEEVTDTEWFFL+SMTQSF
Sbjct: 118 RRRSSSPPFSTPADQEYRKKVLRELNSLISGGVA-PSDDAVDEEVTDTEWFFLVSMTQSF 176

Query: 175 YVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVE 234
                  G GL G+A+   + VWVSG+++L+ SGC+RA+QG VFG+ T+ CIPSANGVVE
Sbjct: 177 AC-----GAGLAGKAFATGNAVWVSGSDQLSGSGCERAKQGGVFGMHTIACIPSANGVVE 231

Query: 235 LGSTEVIIQNSDLMNKVRFLFNFNGSMEIGTWPSAMQNPDQGENDPSSWINDPSPTPAPT 294
           +GSTE I Q+SDL+NKVR LFNF+G     +  +   +PDQGENDPS WINDP  TP   
Sbjct: 232 VGSTEPIRQSSDLINKVRILFNFDGGAGDLSGLNWNLDPDQGENDPSMWINDPIGTPG-- 289

Query: 295 AGFIEIKDSTAAATTTTTTTTTTTTPAIGS--GSASNLSKGIHFELPSSVSLTESVDLQ- 351
                                 +  P  G+   S+   SK I FE  SS ++TE+ +L  
Sbjct: 290 ----------------------SNEPGNGAPSSSSQLFSKSIQFENGSSSTITENPNLDP 327

Query: 352 -----HQQI--PQTQSFFTRELNFSEYAYDHNSVKNGSSRLFKPESGEILNFA-ESKRSS 403
                H Q   P+  + F+RELNFS            SS L KP SGEILNF  E KRSS
Sbjct: 328 TPSPVHSQTQNPKFNNTFSRELNFS----------TSSSTLVKPRSGEILNFGDEGKRSS 377

Query: 404 CTGNGNNSLLSNHSQFVAEDSNKKKRSPTSRGSTEEGMLSFTSGVILPSSGVVKSSGGAG 463
             GN + S  S  +QF     NK+KRS       E+ +LSF                 AG
Sbjct: 378 --GNPDPSSYSGQTQF----ENKRKRSMVL---NEDKVLSFGDKT-------------AG 415

Query: 464 DSDHSDLEASVVKDPDSSRVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYA 523
           +SDHSDLEASVVK+     V  EK+P+KRGRKPANGREEPLNHVEAERQRREKLNQRFYA
Sbjct: 416 ESDHSDLEASVVKE-----VAVEKRPKKRGRKPANGREEPLNHVEAERQRREKLNQRFYA 470

Query: 524 LRAVVPNVSKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKELAGGGKDSH 583
           LRAVVPNVSKMDKASLLGDAI+YINEL++K+   ES+K  ++ +L  VK ELAG    + 
Sbjct: 471 LRAVVPNVSKMDKASLLGDAIAYINELKSKVVKTESEKLQIKNQLEEVKLELAGRKASAS 530

Query: 584 SGPSTSDQDLKMSNHASKLIDLDIEVKIIGWDAMIRIQSSKKNHPAAKLMQALKELDLEV 643
            G      D+  S  + K + ++IEVKIIGWDAMIR++SSK+NHPAA+LM AL +L+LEV
Sbjct: 531 GG------DMSSSCSSIKPVGMEIEVKIIGWDAMIRVESSKRNHPAARLMSALMDLELEV 584

Query: 644 NHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVG 682
           NHASMSVVNDLMIQQATVKMG R YTQEQL+  L +K+G
Sbjct: 585 NHASMSVVNDLMIQQATVKMGFRIYTQEQLRASLISKIG 623
Transcriptional activator. Common transcription factor of light, abscisic acid (ABA), and jasmonic acid (JA) signaling pathways. In cooperation with MYB2 is involved in the regulation of ABA-inducible genes under drought stress conditions. Binds to the MYC recognition site (5'-CACATG-3'), and to the G-box (5'-CACNTG-3') and Z-box (5'-ATACGTGT-3') of light-responsive promoters. Negative regulator of blue light-mediated photomorphogenic growth and blue- and far-red-light regulated gene expression. Positive regulator of lateral root formation.
Arabidopsis thaliana (taxid: 3702)
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1 Back     alignment and function description
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LUK7|BH028_ARATH Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2 Back     alignment and function description
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1 Back     alignment and function description
>sp|O23487|BH003_ARATH Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1 Back     alignment and function description
>sp|O23090|BH014_ARATH Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1 Back     alignment and function description
>sp|P13027|ARRS_MAIZE Anthocyanin regulatory R-S protein OS=Zea mays GN=R-S PE=2 SV=1 Back     alignment and function description
>sp|P13526|ARLC_MAIZE Anthocyanin regulatory Lc protein OS=Zea mays GN=LC PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query685
225427201663 PREDICTED: transcription factor MYC2-lik 0.951 0.983 0.706 0.0
255557569663 Transcription factor AtMYC2, putative [R 0.948 0.980 0.690 0.0
226425257674 bHLH domain protein [Gossypium hirsutum] 0.948 0.964 0.650 0.0
449461491688 PREDICTED: transcription factor MYC2-lik 0.972 0.968 0.635 0.0
224126263630 predicted protein [Populus trichocarpa] 0.909 0.988 0.643 0.0
449519422686 PREDICTED: LOW QUALITY PROTEIN: transcri 0.970 0.969 0.635 0.0
449462019661 PREDICTED: transcription factor MYC2-lik 0.903 0.936 0.609 0.0
224138924638 predicted protein [Populus trichocarpa] 0.909 0.976 0.639 0.0
302398601691 BHLH domain class transcription factor [ 0.950 0.942 0.626 0.0
296278608679 MYC1b transcription factor [Nicotiana ta 0.941 0.949 0.600 0.0
>gi|225427201|ref|XP_002280253.1| PREDICTED: transcription factor MYC2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/696 (70%), Positives = 556/696 (79%), Gaps = 44/696 (6%)

Query: 1   MTDYRLPSTMNLWTDDNGSVMEAFMSSDLTGI-WPPSQSSASTADPMKTHISSSSQQQQQ 59
           MT+YR+P TMNLWTDDN S+MEAF+SSDL+   W PS S+AST+ P     S +  Q Q 
Sbjct: 1   MTEYRVP-TMNLWTDDNASMMEAFISSDLSSFSWGPS-SAASTSTPAPDP-SRNLAQSQP 57

Query: 60  QQQFFNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSSMLGWGDGYYKGEGEKGKSS 119
               FNQETLQQRLQ LIEG+RE WTYAIFWQSS D+SG+S+LGWGDGYYKGE +KGK  
Sbjct: 58  SMAVFNQETLQQRLQALIEGARESWTYAIFWQSSVDFSGASLLGWGDGYYKGEEDKGKR- 116

Query: 120 KIKTSSAAEQEHRKKVLRELNSLISGSTSSPTDDAVDEEVTDTEWFFLISMTQSFYVTGG 179
           K+  SS +EQEHRKKVLRELNSLISG+ SS +DDAVDEEVTDTEWFFL+SMTQSF     
Sbjct: 117 KMTPSSVSEQEHRKKVLRELNSLISGTASS-SDDAVDEEVTDTEWFFLVSMTQSFV---- 171

Query: 180 GGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELGSTE 239
             G GLPGQA F +SPVWV G ERL +S C+RARQ QVFGLQT+VCIPSANGVVELGSTE
Sbjct: 172 -NGAGLPGQALFNSSPVWVVGTERLMSSPCERARQAQVFGLQTMVCIPSANGVVELGSTE 230

Query: 240 VIIQNSDLMNKVRFLFNFNGSMEIGTWPSAMQNPDQGENDPSS-WINDPSPTPAPTAGFI 298
           +I Q+SDLMNKVR LFNFN ++E+G+WP     PDQGE+DPSS WI+DP+         +
Sbjct: 231 LIYQSSDLMNKVRVLFNFN-NLEVGSWPIGAAAPDQGESDPSSLWISDPTSN-------V 282

Query: 299 EIKDSTAAATTTTTTTTTTTTPAIGSGSASNLSKGIHFELPSSVSLTESVDLQHQQIP-- 356
           EIKDS  A      T T  + P    G+  N SK I FE PSS SLTE+  + H      
Sbjct: 283 EIKDSVNA------TATGASNPI---GNQQN-SKSIQFENPSSSSLTENPSIMHNPQQQQ 332

Query: 357 --QTQSFFTRELNFSEYAYDHNSVKNGSSRLFKPESGEILNFAESKRSSCTGNGNNSLLS 414
              TQ FFTRELNFSE+ +D N+ +NG+    KPESGEILNF +SKRSSC+ NGN  + S
Sbjct: 333 QIHTQGFFTRELNFSEFGFDGNNGRNGNLHSLKPESGEILNFGDSKRSSCSANGN--MFS 390

Query: 415 NHSQFVAEDSNKKKRSPTSRGSTEEGMLSFTSGVILPSSGVVKSSGGAGDSDHSDLEASV 474
            HSQ VAE+ NKK+RSPTSRGS EEGMLSFTSGVILPSS VVKSSGG GDSDHSDLEASV
Sbjct: 391 GHSQVVAEE-NKKRRSPTSRGSAEEGMLSFTSGVILPSSCVVKSSGGGGDSDHSDLEASV 449

Query: 475 VKDPDSSRV-EPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSK 533
           V++ DSSRV EPEK+PRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSK
Sbjct: 450 VREADSSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSK 509

Query: 534 MDKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKELAGGGKDS-HSGPST--SD 590
           MDKASLLGDAISYINELRTKLQSAESDKEDLQKE+ S+KKELA   KDS +SG S    D
Sbjct: 510 MDKASLLGDAISYINELRTKLQSAESDKEDLQKEVNSMKKELA--SKDSQYSGSSRPPPD 567

Query: 591 QDLKMSN-HASKLIDLDIEVKIIGWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMS 649
           QDLKMSN H SKL+++DI+VKIIGWDAMIRIQ SKKNHPAAKLM ALKELDL+VNHAS+S
Sbjct: 568 QDLKMSNHHGSKLVEMDIDVKIIGWDAMIRIQCSKKNHPAAKLMGALKELDLDVNHASVS 627

Query: 650 VVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVGDTQ 685
           VVNDLMIQQATVKMGSRFYTQ+QL+  L++K  D++
Sbjct: 628 VVNDLMIQQATVKMGSRFYTQDQLRLALSSKFADSR 663

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255557569|ref|XP_002519814.1| Transcription factor AtMYC2, putative [Ricinus communis] gi|223540860|gb|EEF42418.1| Transcription factor AtMYC2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|226425257|gb|ACO53628.1| bHLH domain protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|449461491|ref|XP_004148475.1| PREDICTED: transcription factor MYC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224126263|ref|XP_002329512.1| predicted protein [Populus trichocarpa] gi|222870221|gb|EEF07352.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449519422|ref|XP_004166734.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor MYC4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449462019|ref|XP_004148739.1| PREDICTED: transcription factor MYC2-like [Cucumis sativus] gi|449514569|ref|XP_004164415.1| PREDICTED: transcription factor MYC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224138924|ref|XP_002326724.1| predicted protein [Populus trichocarpa] gi|222834046|gb|EEE72523.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302398601|gb|ADL36595.1| BHLH domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|296278608|gb|ADH04268.1| MYC1b transcription factor [Nicotiana tabacum] gi|316930967|gb|ADU60100.1| MYC2a transcription factor [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query685
TAIR|locus:2035609623 MYC2 "AT1G32640" [Arabidopsis 0.503 0.553 0.465 1.2e-138
TAIR|locus:2141055589 MYC4 "AT4G17880" [Arabidopsis 0.302 0.351 0.652 5.7e-131
UNIPROTKB|Q336P5699 Os10g0575000 "Os10g0575000 pro 0.540 0.529 0.412 9.4e-122
TAIR|locus:2178555592 MYC3 "AT5G46760" [Arabidopsis 0.424 0.491 0.507 5.1e-121
TAIR|locus:2172932511 NIG1 "AT5G46830" [Arabidopsis 0.255 0.342 0.559 4.2e-89
TAIR|locus:2134583423 AT4G00870 "AT4G00870" [Arabido 0.243 0.394 0.429 1.5e-52
TAIR|locus:2039094566 AIB "AT2G46510" [Arabidopsis t 0.106 0.128 0.753 1.2e-38
TAIR|locus:2035237590 AT1G01260 "AT1G01260" [Arabido 0.099 0.115 0.794 1.4e-38
TAIR|locus:2130619467 AT4G16430 "AT4G16430" [Arabido 0.102 0.149 0.714 3.9e-36
TAIR|locus:2118524518 TT8 "AT4G09820" [Arabidopsis t 0.106 0.140 0.486 5.3e-25
TAIR|locus:2035609 MYC2 "AT1G32640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 750 (269.1 bits), Expect = 1.2e-138, Sum P(2) = 1.2e-138
 Identities = 175/376 (46%), Positives = 222/376 (59%)

Query:     1 MTDYRLPSTMNLWT-DDNGSVMEAFMSS-DLTGIWPPSQSSASTADPMKTHIXXXXXXXX 58
             MTDYRL  TMNLWT DDN S+MEAFMSS D++ +WPP+ ++ +TA    T          
Sbjct:     1 MTDYRLQPTMNLWTTDDNASMMEAFMSSSDISTLWPPASTTTTTAT---TETTPTPAMEI 57

Query:    59 XXXXFFNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSSMLGWGDXXXXXXXXXXXX 118
                  FNQETLQQRLQ LIEG+ EGWTYAIFWQ S D+SG+S+LGWGD            
Sbjct:    58 PAQAGFNQETLQQRLQALIEGTHEGWTYAIFWQPSYDFSGASVLGWGDGYYKGEEDKANP 117

Query:   119 XXIKTS----SAAEQEHRKKVLRELNSLISGSTSSPXXXXXXXXXXXXXWFFLISMTQSF 174
                 +S    + A+QE+RKKVLRELNSLISG  + P             WFFL+SMTQSF
Sbjct:   118 RRRSSSPPFSTPADQEYRKKVLRELNSLISGGVA-PSDDAVDEEVTDTEWFFLVSMTQSF 176

Query:   175 YVTXXXXXXXLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVE 234
                       L G+A+   + VWVSG+++L+ SGC+RA+QG VFG+ T+ CIPSANGVVE
Sbjct:   177 -----ACGAGLAGKAFATGNAVWVSGSDQLSGSGCERAKQGGVFGMHTIACIPSANGVVE 231

Query:   235 LGSTEVIIQNSDLMNKVRFLFNFNGSMEIGTWPSAMQNPDQGENDPSSWINDPSPTPAPT 294
             +GSTE I Q+SDL+NKVR LFNF+G     +  +   +PDQGENDPS WINDP  TP   
Sbjct:   232 VGSTEPIRQSSDLINKVRILFNFDGGAGDLSGLNWNLDPDQGENDPSMWINDPIGTP--- 288

Query:   295 AGFIEIKDSXXXXXXXXXXXXXXXXPAIGSGSASNLSKGIHFE-LPSSVSLTESVDLQHQ 353
              G  E  +                     +GS+S +++  + +  PS V           
Sbjct:   289 -GSNEPGNGAPSSSSQLFSKSIQFE----NGSSSTITENPNLDPTPSPVH-------SQT 336

Query:   354 QIPQTQSFFTRELNFS 369
             Q P+  + F+RELNFS
Sbjct:   337 QNPKFNNTFSRELNFS 352
GO:0003677 "DNA binding" evidence=ISS;IDA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=IEP;RCA
GO:0043619 "regulation of transcription from RNA polymerase II promoter in response to oxidative stress" evidence=IMP
GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IMP
GO:2000068 "regulation of defense response to insect" evidence=IMP
GO:0009611 "response to wounding" evidence=IEP;RCA;TAS
GO:0010200 "response to chitin" evidence=IEP
GO:0005515 "protein binding" evidence=IPI
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA;IMP
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009620 "response to fungus" evidence=RCA
GO:0009694 "jasmonic acid metabolic process" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0009269 "response to desiccation" evidence=IEP
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
TAIR|locus:2141055 MYC4 "AT4G17880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q336P5 Os10g0575000 "Os10g0575000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2178555 MYC3 "AT5G46760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172932 NIG1 "AT5G46830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134583 AT4G00870 "AT4G00870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039094 AIB "AT2G46510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035237 AT1G01260 "AT1G01260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130619 AT4G16430 "AT4G16430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118524 TT8 "AT4G09820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39204RAP1_ARATHNo assigned EC number0.55220.88460.9727yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_1180004
hypothetical protein (631 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_280165
hypothetical protein (275 aa)
    ••• 0.829
estExt_fgenesh4_pg.C_LG_III0246
hypothetical protein (268 aa)
    ••  0.817
eugene3.00010517
hypothetical protein (197 aa)
    ••  0.811
grail3.0010062402
hypothetical protein (295 aa)
    ••  0.810
grail3.0043012605
hypothetical protein (330 aa)
    ••  0.809
eugene3.01580025
hypothetical protein (270 aa)
    ••  0.809
estExt_Genewise1_v1.C_LG_III2193
hypothetical protein (200 aa)
    ••  0.809
grail3.0042000702
hypothetical protein (391 aa)
    ••  0.807
estExt_fgenesh4_pg.C_LG_X0979
SubName- Full=Putative uncharacterized protein; (338 aa)
    ••  0.807
estExt_fgenesh4_pg.C_LG_VI1436
hypothetical protein (237 aa)
    ••  0.804

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query685
pfam14215171 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB trans 2e-73
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 2e-15
smart0035353 smart00353, HLH, helix loop helix domain 1e-13
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 2e-11
>gnl|CDD|222598 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
 Score =  234 bits (599), Expect = 2e-73
 Identities = 94/187 (50%), Positives = 117/187 (62%), Gaps = 16/187 (8%)

Query: 69  LQQRLQQLIEGSREGWTYAIFWQSSCDYSGSSMLGWGDGYYKGEGEKGKSSKIKTSSAAE 128
           LQQRLQ L+E     W+YAIFWQ S D SG  +LGWGDGYY GE +  K     T +   
Sbjct: 1   LQQRLQALVESE--QWSYAIFWQLSPDQSG--VLGWGDGYYNGEIKTRK-----TVAEEL 51

Query: 129 QEHRKKVLRELNSLISGSTSSPTDDAVDEEVTDTEWFFLISMTQSFYVTGGGGGGGLPGQ 188
              RKKVLREL SL+SGS          E++TDTEWF+L+SMT SF       G GLPG+
Sbjct: 52  GLQRKKVLRELYSLLSGS--RDAAALSPEDLTDTEWFYLVSMTFSFPP-----GEGLPGK 104

Query: 189 AYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELGSTEVIIQNSDLM 248
           A+   S +W+SGA  L +S C R+   Q  G+QT+VCIP   GVVELGSTE I ++ +L+
Sbjct: 105 AFASGSHIWLSGANELDSSNCSRSWLAQSAGIQTIVCIPVPGGVVELGSTEKIPEDLNLV 164

Query: 249 NKVRFLF 255
             V+ LF
Sbjct: 165 QHVKSLF 171

This is the N-terminal region of a family of MYB and MYC transcription factors. The DNA-binding HLH domain is further downstream, pfam00010. Members of the MYB and MYC family regulate the biosynthesis of phenylpropanoids in several plant species (DOI:10.1007/s11295-009-0232-y). Length = 171
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 685
PF14215163 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription fa 100.0
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.25
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.23
smart0035353 HLH helix loop helix domain. 99.21
KOG1318411 consensus Helix loop helix transcription factor EB 99.01
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 98.69
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 98.68
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 98.16
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 98.05
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 98.02
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 98.01
KOG4304250 consensus Transcriptional repressors of the hairy/ 97.98
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 97.8
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 97.68
KOG0561 373 consensus bHLH transcription factor [Transcription 97.51
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 97.51
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 97.33
KOG3960284 consensus Myogenic helix-loop-helix transcription 97.24
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 97.17
PLN0321793 transcription factor ATBS1; Provisional 97.14
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 97.13
KOG4029228 consensus Transcription factor HAND2/Transcription 96.99
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 96.97
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 96.55
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 96.22
PRK05007884 PII uridylyl-transferase; Provisional 96.18
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 96.02
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 96.02
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 95.65
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 95.65
PRK0019490 hypothetical protein; Validated 95.43
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 95.25
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 95.24
PRK01759854 glnD PII uridylyl-transferase; Provisional 95.18
PRK03381774 PII uridylyl-transferase; Provisional 94.7
PRK00275895 glnD PII uridylyl-transferase; Provisional 94.63
PRK05092931 PII uridylyl-transferase; Provisional 94.62
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 94.3
PRK03059856 PII uridylyl-transferase; Provisional 94.19
PRK04374869 PII uridylyl-transferase; Provisional 94.18
PRK03381 774 PII uridylyl-transferase; Provisional 93.8
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 93.23
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 93.19
PRK05007 884 PII uridylyl-transferase; Provisional 93.17
KOG4447173 consensus Transcription factor TWIST [Transcriptio 93.08
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 93.06
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 92.74
PRK01759 854 glnD PII uridylyl-transferase; Provisional 92.63
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 92.26
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 92.22
KOG3910632 consensus Helix loop helix transcription factor [T 92.2
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 91.56
PRK03059 856 PII uridylyl-transferase; Provisional 91.42
cd0211660 ACT ACT domains are commonly involved in specifica 90.8
TIGR00655 280 PurU formyltetrahydrofolate deformylase. This mode 90.63
PRK04435147 hypothetical protein; Provisional 90.59
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 90.47
PRK00275 895 glnD PII uridylyl-transferase; Provisional 90.2
PRK05092 931 PII uridylyl-transferase; Provisional 89.15
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 89.13
PRK04374 869 PII uridylyl-transferase; Provisional 88.79
PRK06027 286 purU formyltetrahydrofolate deformylase; Reviewed 88.59
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 87.94
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 87.71
PRK08577136 hypothetical protein; Provisional 87.5
KOG3582856 consensus Mlx interactors and related transcriptio 87.47
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 87.21
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 87.07
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 86.66
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 86.38
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 86.26
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 86.14
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 86.06
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 85.99
KOG3559 598 consensus Transcriptional regulator SIM1 [Transcri 85.03
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 84.4
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 83.45
PRK13010 289 purU formyltetrahydrofolate deformylase; Reviewed 82.91
PRK13011 286 formyltetrahydrofolate deformylase; Reviewed 81.95
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 81.74
KOG3898254 consensus Transcription factor NeuroD and related 80.8
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 80.5
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 80.46
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
Probab=100.00  E-value=9.1e-53  Score=408.57  Aligned_cols=163  Identities=55%  Similarity=0.918  Sum_probs=150.7

Q ss_pred             HHHHHHHHHcCCCCCeEEEEeeecccCCCCCeeEEEcccccCCCCCCCcccccccCcHHHHHHHHHHHHHhhhhccCCCC
Q 005651           69 LQQRLQQLIEGSREGWTYAIFWQSSCDYSGSSMLGWGDGYYKGEGEKGKSSKIKTSSAAEQEHRKKVLRELNSLISGSTS  148 (685)
Q Consensus        69 Lqq~L~~l~~~~~~~WtYAIFWq~s~~~~g~~vL~WgDGy~~g~~~~~~~~~~~~~~~~~q~~Rk~~LreL~sl~~g~~~  148 (685)
                      |||+||.||+  +.+|+||||||+++++   .+|+||||||+|++++++..      ++++++|+++||+||++++    
T Consensus         1 Lq~~Lr~lv~--~~~W~YaVFWk~~~~~---~~L~W~DG~~~g~~~~~~~~------~~~~~~~~~~l~~l~~~~~----   65 (163)
T PF14215_consen    1 LQQRLRSLVE--NSQWTYAVFWKLSPDN---SVLVWGDGYCNGPKETRKNG------EEEQEQRSKVLRELHSSFS----   65 (163)
T ss_pred             ChHHHHHHhC--CCCCcEEEEeEEcCCC---CeeeEcceeecCCcccccch------hhccchhhhHHHHHhhhcc----
Confidence            7999999999  5599999999999984   49999999999998876543      2678899999999998886    


Q ss_pred             CCCCccccccccchHHHHhhhcceecccCCCCCCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeec
Q 005651          149 SPTDDAVDEEVTDTEWFFLISMTQSFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPS  228 (685)
Q Consensus       149 ~~~~~~~~e~vtd~EwFyl~sm~~sF~~~~~~~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~  228 (685)
                        ..++.+++|+|+||||++||+|+|       |+|+|||||++|+|+||++++.+..++|+|+++||++|||||||||+
T Consensus        66 --~~~~~~~~v~~~e~f~~~s~~~sf-------g~G~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv~IPv  136 (163)
T PF14215_consen   66 --SYALSPEEVTDTEWFYLVSMSYSF-------GEGIPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIVCIPV  136 (163)
T ss_pred             --ccccccchhHHHHHHhhceeeEEe-------cCCccEEEeecCccEEEeCCCccccccchhhhhhcccccceEEEEEe
Confidence              245678999999999999998888       59999999999999999999999999999999999999999999999


Q ss_pred             CCceEeeccccccccChHHHHHHHHhc
Q 005651          229 ANGVVELGSTEVIIQNSDLMNKVRFLF  255 (685)
Q Consensus       229 ~~GVvELGSt~~I~E~~~lv~~ik~~F  255 (685)
                      ++||||||||++|+||++||++||++|
T Consensus       137 ~~GVvELGSt~~I~Ed~~~v~~vk~~F  163 (163)
T PF14215_consen  137 PNGVVELGSTEKIPEDSNLVQRVKSLF  163 (163)
T ss_pred             cCCEEEeeeeeeeccCHHHHHHHHhhC
Confidence            999999999999999999999999998

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription] Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription] Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription] Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query685
1r05_A87 Solution Structure Of Max B-Hlh-Lz Length = 87 1e-04
1nkp_B83 Crystal Structure Of Myc-Max Recognizing Dna Length 4e-04
1nlw_B76 Crystal Structure Of Mad-Max Recognizing Dna Length 9e-04
>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz Length = 87 Back     alignment and structure 
Iteration: 1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 505 NHVEAERQRREKLNQRFYALRAVVPNVS--KMDKASLLGDAISYINELRTKLQSAESDKE 562
           +H   ER+RR+ +   F++LR  VP++   K  +A +L  A  YI  +R K+ + + D +
Sbjct: 7   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKVHTLQQDID 66
Query: 563 DLQKELASVKKEL 575
           DL+++ A +++++
Sbjct: 67  DLKRQNALLEQQV 79
>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna Length = 83 Back     alignment and structure
>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna Length = 76 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query685
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 4e-22
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 1e-18
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 4e-17
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 6e-17
1hlo_A80 Protein (transcription factor MAX); transcriptiona 3e-16
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 2e-10
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 1e-07
4f3l_A 361 Mclock, circadian locomoter output cycles protein 1e-07
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 4e-07
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 1e-06
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 2e-06
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
 Score = 90.1 bits (224), Expect = 4e-22
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 505 NHVEAERQRREKLNQRFYALRAVVP---NVSKMDKASLLGDAISYINELRTKLQSAESDK 561
            H   ERQRR +L + F+ALR  +P   N  K  K  +L  A +YI  ++ + Q   S++
Sbjct: 9   THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68

Query: 562 EDLQKELASVKKELA 576
           + L+K    +K +L 
Sbjct: 69  DLLRKRREQLKHKLE 83
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Length = 60 Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361 Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387 Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Length = 68 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query685
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.63
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.59
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.57
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.57
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.53
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.43
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.41
4ati_A118 MITF, microphthalmia-associated transcription fact 99.4
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.37
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.32
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.3
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 99.0
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 98.99
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.77
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.59
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.43
4ath_A83 MITF, microphthalmia-associated transcription fact 98.28
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 97.77
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 96.61
1u8s_A 192 Glycine cleavage system transcriptional repressor, 95.39
2nyi_A 195 Unknown protein; protein structure initiative, PSI 94.68
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 94.06
2nyi_A195 Unknown protein; protein structure initiative, PSI 94.02
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 93.85
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 93.52
1u8s_A192 Glycine cleavage system transcriptional repressor, 93.34
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 93.24
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 92.65
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 91.97
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 91.96
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 91.65
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 91.54
1vhm_A195 Protein YEBR; structural genomics, unknown functio 91.44
3p96_A 415 Phosphoserine phosphatase SERB; ssgcid, structural 90.78
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 90.65
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 90.21
3o1l_A 302 Formyltetrahydrofolate deformylase; structural gen 90.04
3obi_A 288 Formyltetrahydrofolate deformylase; structural gen 89.79
2qyb_A181 Membrane protein, putative; GAF domain, domain of 89.54
3n0v_A 286 Formyltetrahydrofolate deformylase; formyl transfe 89.18
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 87.9
3hcy_A151 Putative two-component sensor histidine kinase PR; 87.85
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 87.71
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 87.66
3lou_A 292 Formyltetrahydrofolate deformylase; structural gen 87.29
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 87.03
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.63  E-value=6.3e-16  Score=133.47  Aligned_cols=69  Identities=23%  Similarity=0.385  Sum_probs=64.8

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHhcCCCC-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651          503 PLNHVEAERQRREKLNQRFYALRAVVPNV-SKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASV  571 (685)
Q Consensus       503 ~~~H~~aER~RRekLn~~f~~LRsLVP~~-sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l  571 (685)
                      +.+|+.+||+||++||++|..|+++||+. .|+||++||.+||+||++|+.+++.|+.+.+.|+..+...
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~   76 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS   76 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46899999999999999999999999996 8999999999999999999999999999999998876643
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 685
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 7e-20
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 3e-19
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 9e-19
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 1e-15
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 2e-15
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 1e-14
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 9e-14
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 4e-13
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (203), Expect = 7e-20
 Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 505 NHVEAERQRREKLNQRFYALRAVVP--NVSKMDKASLLGDAISYINELRTKLQSAESDKE 562
           +H   ER+RR+ +   F++LR  VP     K  +A +L  A  YI  +R K  + + D +
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64

Query: 563 DLQKELASVKKELA 576
           DL+++ A +++++ 
Sbjct: 65  DLKRQNALLEQQVR 78
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query685
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.57
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.54
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.53
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.53
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.41
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.34
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.31
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.3
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 96.64
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 96.06
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 94.24
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 91.44
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 90.95
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 90.83
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 88.48
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 84.81
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.5e-15  Score=125.61  Aligned_cols=73  Identities=30%  Similarity=0.373  Sum_probs=67.5

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHhcCCC---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651          503 PLNHVEAERQRREKLNQRFYALRAVVPN---VSKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKEL  575 (685)
Q Consensus       503 ~~~H~~aER~RRekLn~~f~~LRsLVP~---~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~  575 (685)
                      |..|+.+||+||++||++|..|+++||.   ..|++|++||.+||+||+.|+.+++.|+.+++.|+.+...++..+
T Consensus         2 R~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l   77 (79)
T d1nlwa_           2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999997   368999999999999999999999999999999998888877654
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure